<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 17:39:51"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="15914" stop="14508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15614" g_stop="14808" g_length="807"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15614" e_stop="14808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGATATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGAAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCTTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTAGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAG-TCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="16573" stop="15325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16273" g_stop="15625" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16273" e_stop="15625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCTAGTCATTCAGAACGAGAGAGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="16572" stop="15588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16272" g_stop="15888" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16272" e_stop="15888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCTAGTCATTCAGAACGAGAGAGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397321" ref_strand="+" ref_description="SGN-E397321 [TUS-45-B15](-)">
      <seq>aaatcaaagttcaagagttacttgggtcgaccaatgaaggaatactctaggacgattgtaatggaaacggacattactgacgtaattgatccagaaggatgggaggctacaaacggggactatgcattaagcactctgtatttcggggaatatagcaacagaggagctggatctggaacgggctccagagttaaatgggctggatatcaaggcacaataagtaaggatatcgcgttgaattacacagttgaatccttcttacaaggccaaacttggttgaaggatctcgatgttcaagttcgttttagcctttccagctaatcatcttcttcgtcatcgtcatcatcttcatcatgtcaaattaatctttcttccttttaattccatgtcaaattacgatcgtcttcatcttagttatctcaatttagtctgttcttaatcatgatcttgtacaagtagtgaacattttacgaaaaaattttttaagacgtatttacgtacgtatgtacgtatattataacaaagaatcgatatatactgaataattgtaatgaatactattcattatctaattttcacttgtgcgcggtagattcatataaggactacaaatgaaggcattagaggaagaaaattataaaaaaaaaaaaagtgtttagtgcatttgaaggaataatataaatagatcgtttaatttgtctcgaattttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="23431" stop="22113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23131" g_stop="22412" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E397321" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23131" e_stop="22412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAAAGTTCAAGAGTTACTTGGGTCGACCAATGAAGGAATACTCTAGGACGATTGTAATGGAAACGGACATTACTGACGTAATTGATCCAGAAGGATGGGAGGCTACAAACGGGGACTATGCATTAAGCACTCTGTATTTCGGGGAATATAGCAACAGAGGAGCTGGATCTGGAACGGGCTCCAGAGTTAAATGGGCTGGATATCAAGGCACAATAAGTAAGGATATCGCGTTGAATTACACAGTTGAATCCTTCTTACAAGGCCAAACTTGGTTGAAGGATCTCGATGTTCAAGTTCGTTTTAGCCTTTCCAGCTAATCATCTTCTTCGTCATCGTCATCATCTTCATCATGTCAAATTAATCTTTCTTCCTTTTAATTCCATGTCAAATTACGATCGTCTTCATCTTAGTTATCTCAATTTAGTCTGTTCTTAATCATGATCTTGTACAAGTAGTGAACATTCTACGAAAAAATTTTCTAAGACGTATTTACGTACGTATGTACGTATATTATAACAAAGAATCGATATATACTGAATAATTGTAATGAATACTATTCATTATCTAATTTTCACTTGTGCGCGGTAGATTCATATAAGGACTACAAATGAAGGCATTAGAGGAAGAAAATTATAAAAAAAAAAAAAGTGTTTAGTGCATTTGAAGGAATAATATAAATAGATCGTTTAATTTGTCTCGAATTTTCAATTATACAC</genome_strand>
        <mrna_strand>AAATCAAAGTTCAAGAGTTACTTGGGTCGACCAATGAAGGAATACTCTAGGACGATTGTAATGGAAACGGACATTACTGACGTAATTGATCCAGAAGGATGGGAGGCTACAAACGGGGACTATGCATTAAGCACTCTGTATTTCGGGGAATATAGCAACAGAGGAGCTGGATCTGGAACGGGCTCCAGAGTTAAATGGGCTGGATATCAAGGCACAATAAGTAAGGATATCGCGTTGAATTACACAGTTGAATCCTTCTTACAAGGCCAAACTTGGTTGAAGGATCTCGATGTTCAAGTTCGTTTTAGCCTTTCCAGCTAATCATCTTCTTCGTCATCGTCATCATCTTCATCATGTCAAATTAATCTTTCTTCCTTTTAATTCCATGTCAAATTACGATCGTCTTCATCTTAGTTATCTCAATTTAGTCTGTTCTTAATCATGATCTTGTACAAGTAGTGAACATTTTACGAAAAAATTTTTTAAGACGTATTTACGTACGTATGTACGTATATTATAACAAAGAATCGATATATACTGAATAATTGTAATGAATACTATTCATTATCTAATTTTCACTTGTGCGCGGTAGATTCATATAAGGACTACAAATGAAGGCATTAGAGGAAGAAAATTATAAAAAAAAAAAAAGTGTTTAGTGCATTTGAAGGAATAATATAAATAGATCGTTTAATTTGTCTCGAATTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398730" ref_strand="+" ref_description="SGN-E398730 [TUS-45-B16](-)">
      <seq>gatgggaggctacaaacggggactatgcattaagcactctgtatttcggggaatatagcaacagaggagctggatctggaacgggctccagagttaaatgggctggatatcaaggcacaataagtaaggatatcgcgttgaattacacagttgaatccttcttacaaggccaaacttggttgaaggatctcgatgttcaagttcgttttagcctttccagctaatcatcttcttcgtcatcgtcatcatcttcatcatgtcaaattaatctttcttccttttaattccatgtcaaattacgatcgtcttcatcttagttatctcaatttagtctgttcttaatcatgatcttgtacaagtagtgaacattctacgaaaaaattttttaagacgtatttacgtacgtatgtacgtatattataacaaagaatcgatatatactgaataattgtaatgaatactattcattatctaattttcacttgtgcgcggtagattcatataaggactacaaatgaaggcattagaggaagaaaattataaaaaaaaaaaaagtgtttagtgcatttgaaggaataatataaatagatcgtttaatttgtctcgaattttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="23334" stop="22113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23034" g_stop="22412" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E398730" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23034" e_stop="22412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGGAGGCTACAAACGGGGACTATGCATTAAGCACTCTGTATTTCGGGGAATATAGCAACAGAGGAGCTGGATCTGGAACGGGCTCCAGAGTTAAATGGGCTGGATATCAAGGCACAATAAGTAAGGATATCGCGTTGAATTACACAGTTGAATCCTTCTTACAAGGCCAAACTTGGTTGAAGGATCTCGATGTTCAAGTTCGTTTTAGCCTTTCCAGCTAATCATCTTCTTCGTCATCGTCATCATCTTCATCATGTCAAATTAATCTTTCTTCCTTTTAATTCCATGTCAAATTACGATCGTCTTCATCTTAGTTATCTCAATTTAGTCTGTTCTTAATCATGATCTTGTACAAGTAGTGAACATTCTACGAAAAAATTTTCTAAGACGTATTTACGTACGTATGTACGTATATTATAACAAAGAATCGATATATACTGAATAATTGTAATGAATACTATTCATTATCTAATTTTCACTTGTGCGCGGTAGATTCATATAAGGACTACAAATGAAGGCATTAGAGGAAGAAAATTATAAAAAAAAAAAAAGTGTTTAGTGCATTTGAAGGAATAATATAAATAGATCGTTTAATTTGTCTCGAATTTTCAATTATACAC</genome_strand>
        <mrna_strand>GATGGGAGGCTACAAACGGGGACTATGCATTAAGCACTCTGTATTTCGGGGAATATAGCAACAGAGGAGCTGGATCTGGAACGGGCTCCAGAGTTAAATGGGCTGGATATCAAGGCACAATAAGTAAGGATATCGCGTTGAATTACACAGTTGAATCCTTCTTACAAGGCCAAACTTGGTTGAAGGATCTCGATGTTCAAGTTCGTTTTAGCCTTTCCAGCTAATCATCTTCTTCGTCATCGTCATCATCTTCATCATGTCAAATTAATCTTTCTTCCTTTTAATTCCATGTCAAATTACGATCGTCTTCATCTTAGTTATCTCAATTTAGTCTGTTCTTAATCATGATCTTGTACAAGTAGTGAACATTCTACGAAAAAATTTTTTAAGACGTATTTACGTACGTATGTACGTATATTATAACAAAGAATCGATATATACTGAATAATTGTAATGAATACTATTCATTATCTAATTTTCACTTGTGCGCGGTAGATTCATATAAGGACTACAAATGAAGGCATTAGAGGAAGAAAATTATAAAAAAAAAAAAAGTGTTTAGTGCATTTGAAGGAATAATATAAATAGATCGTTTAATTTGTCTCGAATTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397218" ref_strand="+" ref_description="SGN-E397218 [TUS-45-A15](-)">
      <seq>tccagaaggatgggaggctacaaacggggactatgcattaagcactctgtatttcggggaatatagcaacagaggagctggatctggaacgggctccagagttaaatgggctggatatcaaggcacaataagtaaggatatcgcgttgaattacacagttgaatccttcttacaaggccaaacttggttgaaggatctcgatgttcaagttcgttttagcctttccagctaatcatcttcttcgtcatcgtcatcatcttcatcatgtcaaattaatctttcttccttttaattccatgtcaaattacgatcgtcttcatcttagttatctcaatttggtctgttcttaatcatgattttgtacaagtagtgaacattttacgaaaaaattttgtaagaggtatttacgtaagtatgtacgtatattataacaaagaatcgatatatagtgaataattgtaatgaataatattcattatgtaattttcacttgtgcgcggaagattcatataaggactacaaatgaaggcattagaggaagaaaattataaaaaaaaaaaaagtgtttaaaacatttgaaggaataatataaatagatcgtttaattaaaaaagaatatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="23342" stop="22136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23042" g_stop="22435" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="621" polyA_stop="630"/>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E397218" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23042" e_stop="22435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGAAGGATGGGAGGCTACAAACGGGGACTATGCATTAAGCACTCTGTATTTCGGGGAATATAGCAACAGAGGAGCTGGATCTGGAACGGGCTCCAGAGTTAAATGGGCTGGATATCAAGGCACAATAAGTAAGGATATCGCGTTGAATTACACAGTTGAATCCTTCTTACAAGGCCAAACTTGGTTGAAGGATCTCGATGTTCAAGTTCGTTTTAGCCTTTCCAGCTAATCATCTTCTTCGTCATCGTCATCATCTTCATCATGTCAAATTAATCTTTCTTCCTTTTAATTCCATGTCAAATTACGATCGTCTTCATCTTAGTTATCTCAATTTAGTCTGTTCTTAATCATGATCTTGTACAAGTAGTGAACATTCTACGAAAAAATTTTCTAAGACGTATTTACGTACGTATGTACGTATATTATAACAAAGAATCGATATATACTGAATAATTGTAATGAATACTATTCATTATCTAATTTTCACTTGTGCGCGGTAGATTCATATAAGGACTACAAATGAAGGCATTAGAGGAAGAAAATTATAAAAAAAAAAAAAGTGTTTAGTGCATTTGAAGGAATAATATAAATAGATCGTTTAATTT</genome_strand>
        <mrna_strand>TCCAGAAGGATGGGAGGCTACAAACGGGGACTATGCATTAAGCACTCTGTATTTCGGGGAATATAGCAACAGAGGAGCTGGATCTGGAACGGGCTCCAGAGTTAAATGGGCTGGATATCAAGGCACAATAAGTAAGGATATCGCGTTGAATTACACAGTTGAATCCTTCTTACAAGGCCAAACTTGGTTGAAGGATCTCGATGTTCAAGTTCGTTTTAGCCTTTCCAGCTAATCATCTTCTTCGTCATCGTCATCATCTTCATCATGTCAAATTAATCTTTCTTCCTTTTAATTCCATGTCAAATTACGATCGTCTTCATCTTAGTTATCTCAATTTGGTCTGTTCTTAATCATGATTTTGTACAAGTAGTGAACATTTTACGAAAAAATTTTGTAAGAGGTATTTACGTAAGTATGTACGTATATTATAACAAAGAATCGATATATAGTGAATAATTGTAATGAATAATATTCATTATGTAATTTTCACTTGTGCGCGGAAGATTCATATAAGGACTACAAATGAAGGCATTAGAGGAAGAAAATTATAAAAAAAAAAAAAGTGTTTAAAACATTTGAAGGAATAATATAAATAGATCGTTTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363531" ref_strand="-" ref_description="SGN-E363531 [cLPP-4-H12]">
      <seq>caaagttcaagagttacttgggtcgaccaatgaaggaatactctaggacgattgtaatggaaacggacattactgacgtaattgatccagaaggatgggaggctacaaacggggactatgcattaagcactctgtatttcggggaatatagcaacagaggagctggatctgaaacgggctccagagttaaatgggctggatatcaaggcacaataagtaaggatatcgcgttgaattacacagttgaatccttcttacaaggccaaacttggttgaaggatctcgatgttcaagttcgttttagcctttccagctaatcatcttcttcgtcatcgtcatcatcttcatcatgtcaaattaatctttcttcctcttaattccatgtcaaattacgatcgtcttcatcttagttatctcaatttagtctgttcttaatcatgatcttgtacaagtagtgaacattctacgaaaaatttttctaagacgtatttacgtacgtatgtacgtatattataacaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="23427" stop="22305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23127" g_stop="22606" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="523" polyA_stop="536"/>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E363531" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363531" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23127" e_stop="22606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTTCAAGAGTTACTTGGGTCGACCAATGAAGGAATACTCTAGGACGATTGTAATGGAAACGGACATTACTGACGTAATTGATCCAGAAGGATGGGAGGCTACAAACGGGGACTATGCATTAAGCACTCTGTATTTCGGGGAATATAGCAACAGAGGAGCTGGATCTGGAACGGGCTCCAGAGTTAAATGGGCTGGATATCAAGGCACAATAAGTAAGGATATCGCGTTGAATTACACAGTTGAATCCTTCTTACAAGGCCAAACTTGGTTGAAGGATCTCGATGTTCAAGTTCGTTTTAGCCTTTCCAGCTAATCATCTTCTTCGTCATCGTCATCATCTTCATCATGTCAAATTAATCTTTCTTCCTTTTAATTCCATGTCAAATTACGATCGTCTTCATCTTAGTTATCTCAATTTAGTCTGTTCTTAATCATGATCTTGTACAAGTAGTGAACATTCTACGAAAAAATTTTCTAAGACGTATTTACGTACGTATGTACGTATATTATAACAAAGA</genome_strand>
        <mrna_strand>CAAAGTTCAAGAGTTACTTGGGTCGACCAATGAAGGAATACTCTAGGACGATTGTAATGGAAACGGACATTACTGACGTAATTGATCCAGAAGGATGGGAGGCTACAAACGGGGACTATGCATTAAGCACTCTGTATTTCGGGGAATATAGCAACAGAGGAGCTGGATCTGAAACGGGCTCCAGAGTTAAATGGGCTGGATATCAAGGCACAATAAGTAAGGATATCGCGTTGAATTACACAGTTGAATCCTTCTTACAAGGCCAAACTTGGTTGAAGGATCTCGATGTTCAAGTTCGTTTTAGCCTTTCCAGCTAATCATCTTCTTCGTCATCGTCATCATCTTCATCATGTCAAATTAATCTTTCTTCCTCTTAATTCCATGTCAAATTACGATCGTCTTCATCTTAGTTATCTCAATTTAGTCTGTTCTTAATCATGATCTTGTACAAGTAGTGAACATTCTACGAAAAATTTTTCTAAGACGTATTTACGTACGTATGTACGTATATTATAACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364251" ref_strand="-" ref_description="SGN-E364251 [cLPP-20-G9]">
      <seq>cggggactatgcattaagcactctgtatttcggggaatatagcaacagaggagctggatctgaaacgggctccagagttaaatgggctggatatcaaggcacaataagtaaggatatcgcgttgaattacacagttgaatccttcttacaaggccaaacttggttgaaggatctcgatgttcaagttcgttttagcctttccagctaatcatcttcttcgtcatcgtcatcatcttcatcatgtcaaattaatctttcttcctcttaattccatgtcaaattacgatcgtcttcatcttagttatctcaatttagtctgttcttaatcatgatcttgtacaagtagtgaacattctacgaaaaatttttctaagacgtatttacgtacgtatgtacgtatattataacaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="23318" stop="22305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23018" g_stop="22606" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="414" polyA_stop="427"/>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E364251" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364251" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23018" e_stop="22606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGGACTATGCATTAAGCACTCTGTATTTCGGGGAATATAGCAACAGAGGAGCTGGATCTGGAACGGGCTCCAGAGTTAAATGGGCTGGATATCAAGGCACAATAAGTAAGGATATCGCGTTGAATTACACAGTTGAATCCTTCTTACAAGGCCAAACTTGGTTGAAGGATCTCGATGTTCAAGTTCGTTTTAGCCTTTCCAGCTAATCATCTTCTTCGTCATCGTCATCATCTTCATCATGTCAAATTAATCTTTCTTCCTTTTAATTCCATGTCAAATTACGATCGTCTTCATCTTAGTTATCTCAATTTAGTCTGTTCTTAATCATGATCTTGTACAAGTAGTGAACATTCTACGAAAAAATTTTCTAAGACGTATTTACGTACGTATGTACGTATATTATAACAAAGA</genome_strand>
        <mrna_strand>CGGGGACTATGCATTAAGCACTCTGTATTTCGGGGAATATAGCAACAGAGGAGCTGGATCTGAAACGGGCTCCAGAGTTAAATGGGCTGGATATCAAGGCACAATAAGTAAGGATATCGCGTTGAATTACACAGTTGAATCCTTCTTACAAGGCCAAACTTGGTTGAAGGATCTCGATGTTCAAGTTCGTTTTAGCCTTTCCAGCTAATCATCTTCTTCGTCATCGTCATCATCTTCATCATGTCAAATTAATCTTTCTTCCTCTTAATTCCATGTCAAATTACGATCGTCTTCATCTTAGTTATCTCAATTTAGTCTGTTCTTAATCATGATCTTGTACAAGTAGTGAACATTCTACGAAAAATTTTTCTAAGACGTATTTACGTACGTATGTACGTATATTATAACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219450" ref_strand="+" ref_description="SGN-E219450 [cLEL-11-D2](-)">
      <seq>gcattaagcactctgtatttcggggaatatagcaccagaggagctggatctggaacgggctccagagttaaatgggctggatatcaaggcacaataagtaaggatatcgcgttgaattacacagttgaatccttcttacaaggccaaacttggttgaaggatctcgatgttcaagttcgttttagcctttccagctaatcatcttcttcgtcatcgtcatcatcttcatcatgtcaaattaatctttcttccttttaattccatgtcaaattacgatcgtcttcatcttagttatctcaatttagtctgttcttaatcatgatcttgtacaagtagtaaccattctacgaaaaaattttctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="23308" stop="22344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23008" g_stop="22635" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E219450" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23008" e_stop="22635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTAAGCACTCTGTATTTCGGGGAATATAGCAACAGAGGAGCTGGATCTGGAACGGGCTCCAGAGTTAAATGGGCTGGATATCAAGGCACAATAAGTAAGGATATCGCGTTGAATTACACAGTTGAATCCTTCTTACAAGGCCAAACTTGGTTGAAGGATCTCGATGTTCAAGTTCGTTTTAGCCTTTCCAGCTAATCATCTTCTTCGTCATCGTCATCATCTTCATCATGTCAAATTAATCTTTCTTCCTTTTAATTCCATGTCAAATTACGATCGTCTTCATCTTAGTTATCTCAATTTAGTCTGTTCTTAATCATGATCTTGTACAAGTAGTGAACATTCTACGAAAAAATTTTCTAAGACGTATTTAC</genome_strand>
        <mrna_strand>GCATTAAGCACTCTGTATTTCGGGGAATATAGCACCAGAGGAGCTGGATCTGGAACGGGCTCCAGAGTTAAATGGGCTGGATATCAAGGCACAATAAGTAAGGATATCGCGTTGAATTACACAGTTGAATCCTTCTTACAAGGCCAAACTTGGTTGAAGGATCTCGATGTTCAAGTTCGTTTTAGCCTTTCCAGCTAATCATCTTCTTCGTCATCGTCATCATCTTCATCATGTCAAATTAATCTTTCTTCCTTTTAATTCCATGTCAAATTACGATCGTCTTCATCTTAGTTATCTCAATTTAGTCTGTTCTTAATCATGATCTTGTACAAGTAGTAACCATTCTACGAAAAAATTTTCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219021" ref_strand="+" ref_description="SGN-E219021 [cLEL-11-D1](-)">
      <seq>tgggaggctacaaacggggactatgcattaagcactctgtatttcggggaatatagcaacagaggagctggatctggaacgggctccagagttaaatgggctggatatcaaggcacaataagtaaggatatcgcgttgaattacacagttgaatccttcttacaaggccaaacttggttgaaggatctcgatgttcaagttcgttttagcctttccagctaatcatcttcttcgtcatcgtcatcatcttcatcatgtcaaattaatctttcttccttttaattccatgtcaaattacgatcgtcttcatcttagttatctcaatttagtctgttcttaatcatgatcttgtacaagtagtgaacattctaaaaaaaaattttctaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="23332" stop="22344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23032" g_stop="22640" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E219021" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23032" e_stop="22640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGGCTACAAACGGGGACTATGCATTAAGCACTCTGTATTTCGGGGAATATAGCAACAGAGGAGCTGGATCTGGAACGGGCTCCAGAGTTAAATGGGCTGGATATCAAGGCACAATAAGTAAGGATATCGCGTTGAATTACACAGTTGAATCCTTCTTACAAGGCCAAACTTGGTTGAAGGATCTCGATGTTCAAGTTCGTTTTAGCCTTTCCAGCTAATCATCTTCTTCGTCATCGTCATCATCTTCATCATGTCAAATTAATCTTTCTTCCTTTTAATTCCATGTCAAATTACGATCGTCTTCATCTTAGTTATCTCAATTTAGTCTGTTCTTAATCATGATCTTGTACAAGTAGTGAACATTCTACGAAAAAATTTTCTAAGACGTA</genome_strand>
        <mrna_strand>TGGGAGGCTACAAACGGGGACTATGCATTAAGCACTCTGTATTTCGGGGAATATAGCAACAGAGGAGCTGGATCTGGAACGGGCTCCAGAGTTAAATGGGCTGGATATCAAGGCACAATAAGTAAGGATATCGCGTTGAATTACACAGTTGAATCCTTCTTACAAGGCCAAACTTGGTTGAAGGATCTCGATGTTCAAGTTCGTTTTAGCCTTTCCAGCTAATCATCTTCTTCGTCATCGTCATCATCTTCATCATGTCAAATTAATCTTTCTTCCTTTTAATTCCATGTCAAATTACGATCGTCTTCATCTTAGTTATCTCAATTTAGTCTGTTCTTAATCATGATCTTGTACAAGTAGTGAACATTCTAAAAAAAAATTTTCTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332865" ref_strand="+" ref_description="SGN-E332865 [cTOD-19-G15]">
      <seq>aacacgattaggtgttcctgcatggattaaacaaggtgatagaagaatgttggatgaagaagaaggcaaagacatgaagtcttttataaacatgacagttgcaaaagatggtagtggtaattttagttccataaatgaagccttaaaggcagttccacaaagctttgaaggaaggttctttatttatattaaagaaggagtttatgaagaaaatgtagttgtgtcacaagtcaatcttacatttgttggagatggatcccaaaagagtattatctccggcagcaaaaacattgtggatgacctcacaacataccaaaccgcaacagttgctatttcaggagatggattttttgcatataagatgggattccgtaacacagcgggtcctaaaaaagtagaagcagtggctctacgagtccaagctgatcatgcaatatttatgaattgtcgtatggagggtcaccaaagtgtgatctatgctcaggcctatcgacaattttatcgtggatgttacatcacaggcacagttgacatcatatcaggaaacgcggctgctgtgttccaaaactgtcaaatttacctaaggaaaccaatgaatgaccaaaagaacgtcattaccgcacaaggaaggttgagcaagcgccaaactacagggactgtcttgcaaagttgtagcattttcgcagacgatacacttgaaccctgaaaatcaaagttcaagagttacttgggtcgaccaatgaaggaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="24500" stop="22786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24200" g_stop="24027" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24026" i_stop="23938" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.645" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23937" g_stop="23783" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="329" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23782" i_stop="23509" i_length="274">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23508" g_stop="23086" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="752" r_length="423" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E332865" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24200" e_stop="24027"/>
          <exon e_start="23937" e_stop="23783"/>
          <exon e_start="23508" e_stop="23086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACGATTAGGTGTTCCTGCATGGATTAAACAAGGTGATAGAAGAATGTTGGATGAAGAAGAAGGCAAAGACATGAAGTCTTTTATAAACATGACAGTTGCAAAAGATGGTAGTGGTAATTTTAGTTCCATAAATGAAGCCTTAAAGGCAGTTCCACAAAGCTTTGAAGGAAGGTACAAATATTTACTCCATTTTTTTTACAAATGCAATTAATTAATAGTTGGATCTTCCAATTTTCTTATATATAATGATAACAATGCAGGTTCTTTATTTATATTAAAGAAGGAGTTTATGAAGAAAATGTAGTTGTGTCACAAGTCAATCTTACATTTGTTGGAGATGGATCCCAAAAGAGTATTATCTCCGGCAGCAAAAACATTGTGGATGACCTCACAACATACCAAACCGCAACAGTTGGTAAGTAATAATGAATAAAAGATGCAGGATACAAGGTGGTATAAGTAAACTCTGCATAACTAATGTATTACTAATATCTGCAAAACTCTAATCAGCTACCATACGACCCTTCAACCATGACCAATGAAATAATCTCTTCGGATCTTTGTTGACGCGGACAATATCATTTGGGGTTATTATATAACGTTTAATTGACGATATAAGAAAATAACCAATGTTACATTATATTGTAAAGTTAATTATATTCTTCTTATTTCCCCTATGTCTTGTGCAGCTATTTCAGGAGATGGATTTTTTGCATATAAGATGGGATTCCGTAACACAGCGGGTCCTGAAAAATTAGAAGCAGTGGCTCTACGAGTCCAAGCTGATCATGCAATATTTATGAATTGTCGTATGGAGGGTCACCAAAGTGTGATCTATGCTCAGGCCTATCGACAATTTTATCGTGGATGTTACATCACAGGCACAGTTGACATCATATCAGGAAACGCGGCTGCTGTGTTCCAAAACTGTCAAATTTACCTAAGGAAACCAATGAATGACCAAAAGAACGTCATTACCGCACAAGGAAGGTTGAGCAAGCGCCAAACTACAGGGACTGTCTTGCAAAGTTGTAGCATTTTCGCAGACGATACACTTGAACCTGAAAAATCAAAGTTCAAGAGTTACTTGGGTCGACCAATGAAGGAATACT</genome_strand>
        <mrna_strand>AACACGATTAGGTGTTCCTGCATGGATTAAACAAGGTGATAGAAGAATGTTGGATGAAGAAGAAGGCAAAGACATGAAGTCTTTTATAAACATGACAGTTGCAAAAGATGGTAGTGGTAATTTTAGTTCCATAAATGAAGCCTTAAAGGCAGTTCCACAAAGCTTTGAAGGAAG.........................................................................................GTTCTTTATTTATATTAAAGAAGGAGTTTATGAAGAAAATGTAGTTGTGTCACAAGTCAATCTTACATTTGTTGGAGATGGATCCCAAAAGAGTATTATCTCCGGCAGCAAAAACATTGTGGATGACCTCACAACATACCAAACCGCAACAGTTG..................................................................................................................................................................................................................................................................................CTATTTCAGGAGATGGATTTTTTGCATATAAGATGGGATTCCGTAACACAGCGGGTCCTAAAAAAGTAGAAGCAGTGGCTCTACGAGTCCAAGCTGATCATGCAATATTTATGAATTGTCGTATGGAGGGTCACCAAAGTGTGATCTATGCTCAGGCCTATCGACAATTTTATCGTGGATGTTACATCACAGGCACAGTTGACATCATATCAGGAAACGCGGCTGCTGTGTTCCAAAACTGTCAAATTTACCTAAGGAAACCAATGAATGACCAAAAGAACGTCATTACCGCACAAGGAAGGTTGAGCAAGCGCCAAACTACAGGGACTGTCTTGCAAAGTTGTAGCATTTTCGCAGACGATACACTTGAACCCTGAAAATCAAAGTTCAAGAGTTACTTGGGTCGACCAATGAAGGAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689358" ref_strand="+" ref_description="SGN-E689358 [t3_tus_84_F09]">
      <seq>caacacgattaggtgttcctgcatggattaaacaaggtgatagaagaatgttggatgaagaagaaggcaaagacatgaagtcttttataaacatgacagttgcaaaagatggtagtggtaattttagttccataaatgaagccttaaaggcagttccacaaagctttgaaggaaggttctttatttatattaaagaaggagtttatgaagaaaatgtagttgtgtcacaagtcaatcttacatttgttggagatggatcccaaaagagtattatctccggcagcaaaaacattgtggatgacctcacaacataccaaaccgcaacagttgctatttcaggagatggattttttgcatataagatgggattccgtaacacagcgggtcctaaaaaagtagaagcagtggctctacgagtccaagctgatcatgcaatatttatgaattgtcgtatggagggtcaccaaagtgtgatctatgctcaggcctatcgacaattttatcgtggatgttacatcacaggcacagttgacatcatatcangaaacgcggctgctgtgttccaaaactgtcaaatttacctaaggaaaccaatgaatgaccaaaagaacgtcattaccgcacaaggaaggttgagcaagcgccaaactacggggactgtcttgcaagttgtagcattttcgcagacgatacacttgaacctgaaaatcaaagttcaagagttacttgggtcgaccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="24501" stop="22797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24201" g_stop="24027" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24026" i_stop="23938" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.645" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23937" g_stop="23783" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="330" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23782" i_stop="23509" i_length="274">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23508" g_stop="23097" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="740" r_length="410" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E689358" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24201" e_stop="24027"/>
          <exon e_start="23937" e_stop="23783"/>
          <exon e_start="23508" e_stop="23097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACGATTAGGTGTTCCTGCATGGATTAAACAAGGTGATAGAAGAATGTTGGATGAAGAAGAAGGCAAAGACATGAAGTCTTTTATAAACATGACAGTTGCAAAAGATGGTAGTGGTAATTTTAGTTCCATAAATGAAGCCTTAAAGGCAGTTCCACAAAGCTTTGAAGGAAGGTACAAATATTTACTCCATTTTTTTTACAAATGCAATTAATTAATAGTTGGATCTTCCAATTTTCTTATATATAATGATAACAATGCAGGTTCTTTATTTATATTAAAGAAGGAGTTTATGAAGAAAATGTAGTTGTGTCACAAGTCAATCTTACATTTGTTGGAGATGGATCCCAAAAGAGTATTATCTCCGGCAGCAAAAACATTGTGGATGACCTCACAACATACCAAACCGCAACAGTTGGTAAGTAATAATGAATAAAAGATGCAGGATACAAGGTGGTATAAGTAAACTCTGCATAACTAATGTATTACTAATATCTGCAAAACTCTAATCAGCTACCATACGACCCTTCAACCATGACCAATGAAATAATCTCTTCGGATCTTTGTTGACGCGGACAATATCATTTGGGGTTATTATATAACGTTTAATTGACGATATAAGAAAATAACCAATGTTACATTATATTGTAAAGTTAATTATATTCTTCTTATTTCCCCTATGTCTTGTGCAGCTATTTCAGGAGATGGATTTTTTGCATATAAGATGGGATTCCGTAACACAGCGGGTCCTGAAAAATTAGAAGCAGTGGCTCTACGAGTCCAAGCTGATCATGCAATATTTATGAATTGTCGTATGGAGGGTCACCAAAGTGTGATCTATGCTCAGGCCTATCGACAATTTTATCGTGGATGTTACATCACAGGCACAGTTGACATCATATCAGGAAACGCGGCTGCTGTGTTCCAAAACTGTCAAATTTACCTAAGGAAACCAATGAATGACCAAAAGAACGTCATTACCGCACAAGGAAGGTTGAGCAAGCGCCAAACTACAGGGACTGTCTTGCAAAGTTGTAGCATTTTCGCAGACGATACACTTGAACCTGAAAAATCAAAGTTCAAGAGTTACTTGGGTCGACCAAT</genome_strand>
        <mrna_strand>CAACACGATTAGGTGTTCCTGCATGGATTAAACAAGGTGATAGAAGAATGTTGGATGAAGAAGAAGGCAAAGACATGAAGTCTTTTATAAACATGACAGTTGCAAAAGATGGTAGTGGTAATTTTAGTTCCATAAATGAAGCCTTAAAGGCAGTTCCACAAAGCTTTGAAGGAAG.........................................................................................GTTCTTTATTTATATTAAAGAAGGAGTTTATGAAGAAAATGTAGTTGTGTCACAAGTCAATCTTACATTTGTTGGAGATGGATCCCAAAAGAGTATTATCTCCGGCAGCAAAAACATTGTGGATGACCTCACAACATACCAAACCGCAACAGTTG..................................................................................................................................................................................................................................................................................CTATTTCAGGAGATGGATTTTTTGCATATAAGATGGGATTCCGTAACACAGCGGGTCCTAAAAAAGTAGAAGCAGTGGCTCTACGAGTCCAAGCTGATCATGCAATATTTATGAATTGTCGTATGGAGGGTCACCAAAGTGTGATCTATGCTCAGGCCTATCGACAATTTTATCGTGGATGTTACATCACAGGCACAGTTGACATCATATCANGAAACGCGGCTGCTGTGTTCCAAAACTGTCAAATTTACCTAAGGAAACCAATGAATGACCAAAAGAACGTCATTACCGCACAAGGAAGGTTGAGCAAGCGCCAAACTACGGGGACTGTCTTGC-AAGTTGTAGCATTTTCGCAGACGATACACTTGAACCTG-AAAATCAAAGTTCAAGAGTTACTTGGGTCGACCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330652" ref_strand="+" ref_description="SGN-E330652 [cTOD-8-N18]">
      <seq>aagtcttttataaacatgacagttgcaaaagatggtagtggtaattttagttccataaatgaagccttaaaggcagttccacaaagctttgaaggaaggttctttatttatattaaagaaggagtttatgaagaaaatgtagttgtgtcacaagtcaatcttacatttgttggagatggatcccaaaagagtattatctccggcagcaaaaacattgtggatgacctcacaacataccaaaccgcaacagttgctatttcaggagatggattttttgcatataagatgggattccgtaacacagcgggtcctgaaaaattagaagcagtggctctacgagtccaagctgatcatgcaatatttatgaattgtcgtatggagggtcaccaaagtgtgatctatgctcaggcctatcgacaattttatcgtggatgttacatcacaggcacagttgacatcatatcaggaaacgcggctgctgtgttccaaaactgtcaaatttacctaaggaaaccaatgaatgaccaaaagaacgtcattaccgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="24424" stop="22915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24124" g_stop="24027" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24026" i_stop="23938" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.645" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23937" g_stop="23783" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="253" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23782" i_stop="23509" i_length="274">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23508" g_stop="23215" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="547" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E330652" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24124" e_stop="24027"/>
          <exon e_start="23937" e_stop="23783"/>
          <exon e_start="23508" e_stop="23215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCTTTTATAAACATGACAGTTGCAAAAGATGGTAGTGGTAATTTTAGTTCCATAAATGAAGCCTTAAAGGCAGTTCCACAAAGCTTTGAAGGAAGGTACAAATATTTACTCCATTTTTTTTACAAATGCAATTAATTAATAGTTGGATCTTCCAATTTTCTTATATATAATGATAACAATGCAGGTTCTTTATTTATATTAAAGAAGGAGTTTATGAAGAAAATGTAGTTGTGTCACAAGTCAATCTTACATTTGTTGGAGATGGATCCCAAAAGAGTATTATCTCCGGCAGCAAAAACATTGTGGATGACCTCACAACATACCAAACCGCAACAGTTGGTAAGTAATAATGAATAAAAGATGCAGGATACAAGGTGGTATAAGTAAACTCTGCATAACTAATGTATTACTAATATCTGCAAAACTCTAATCAGCTACCATACGACCCTTCAACCATGACCAATGAAATAATCTCTTCGGATCTTTGTTGACGCGGACAATATCATTTGGGGTTATTATATAACGTTTAATTGACGATATAAGAAAATAACCAATGTTACATTATATTGTAAAGTTAATTATATTCTTCTTATTTCCCCTATGTCTTGTGCAGCTATTTCAGGAGATGGATTTTTTGCATATAAGATGGGATTCCGTAACACAGCGGGTCCTGAAAAATTAGAAGCAGTGGCTCTACGAGTCCAAGCTGATCATGCAATATTTATGAATTGTCGTATGGAGGGTCACCAAAGTGTGATCTATGCTCAGGCCTATCGACAATTTTATCGTGGATGTTACATCACAGGCACAGTTGACATCATATCAGGAAACGCGGCTGCTGTGTTCCAAAACTGTCAAATTTACCTAAGGAAACCAATGAATGACCAAAAGAACGTCATTACCGCAC</genome_strand>
        <mrna_strand>AAGTCTTTTATAAACATGACAGTTGCAAAAGATGGTAGTGGTAATTTTAGTTCCATAAATGAAGCCTTAAAGGCAGTTCCACAAAGCTTTGAAGGAAG.........................................................................................GTTCTTTATTTATATTAAAGAAGGAGTTTATGAAGAAAATGTAGTTGTGTCACAAGTCAATCTTACATTTGTTGGAGATGGATCCCAAAAGAGTATTATCTCCGGCAGCAAAAACATTGTGGATGACCTCACAACATACCAAACCGCAACAGTTG..................................................................................................................................................................................................................................................................................CTATTTCAGGAGATGGATTTTTTGCATATAAGATGGGATTCCGTAACACAGCGGGTCCTGAAAAATTAGAAGCAGTGGCTCTACGAGTCCAAGCTGATCATGCAATATTTATGAATTGTCGTATGGAGGGTCACCAAAGTGTGATCTATGCTCAGGCCTATCGACAATTTTATCGTGGATGTTACATCACAGGCACAGTTGACATCATATCAGGAAACGCGGCTGCTGTGTTCCAAAACTGTCAAATTTACCTAAGGAAACCAATGAATGACCAAAAGAACGTCATTACCGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364418" ref_strand="+" ref_description="SGN-E364418 [cLPP-20-O8]">
      <seq>agccccttcaccacaaggtgaaggagctatgggagcaatatgcgcggcaacagatttcagtcaaagatgtggggacattctatcaaaagttgtacaagcaaatgcctctggtgctcaacctacagatcttctcaaggcaaccgtatctgcagctatcgatgagattgctgccggtattgtacaactagacaaaatcaacaaggatatcccagagaaggctgttgctcatgacgattgtatagccctccttggtgatgccaaaaaagacttgaacgcttccatttacttgcttgaaggtggcgttaatgatgtcgccacaacaaccgctgaacttaataacaagttaagtgcagctttgacattccaaatcatgtgtgtggatggataccctgaagcacaccaatccacagtgcaaagcgccttgtagaaaacagaggaacacaccaccaattctctcgttgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="25028" stop="23965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24728" g_stop="24265" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E364418" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24728" e_stop="24265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCCCCTCACCACAAGGTGAAGGAGCTATGGGAGCAATATGCGCGGGAACAGATTTCAGTCAAAGTTGTGGGGACATTCTATCAAAAGTTGTACAAGCAAATGCCTCTGGTGCTCAACCTACAGATCTTCTCAAGGCAACCGTATCTGCAGCTATCGATGAGATTGCTGCCGGTATTGTAGAACTAGACAAAATCAACAAGGATATCCCAGAGAAGGTCGTTGCTCATGACGATTGTATGGCCCTCCTTGGTTATGCCAAAAAAGACTTGAACGCTTCGATTTACTTGCTTGAAGGTGGCGTTAATGATGTCGCCACAACAACCGCTGAACTTAATAACAAGTTAAGTGCAGCTTTGACATTCCAAAGCATGTGTGTGGATGGATACCCTGAAGCAGACCAGTCCACGGTGCAAAGCGCCTTGAAGAAAACAGAGGAACACACCACCAATTCTCTTGTTGTTG</genome_strand>
        <mrna_strand>AGCCCCTTCACCACAAGGTGAAGGAGCTATGGGAGCAATATGCGCGGCAACAGATTTCAGTCAAAGATGTGGGGACATTCTATCAAAAGTTGTACAAGCAAATGCCTCTGGTGCTCAACCTACAGATCTTCTCAAGGCAACCGTATCTGCAGCTATCGATGAGATTGCTGCCGGTATTGTACAACTAGACAAAATCAACAAGGATATCCCAGAGAAGGCTGTTGCTCATGACGATTGTATAGCCCTCCTTGGTGATGCCAAAAAAGACTTGAACGCTTCCATTTACTTGCTTGAAGGTGGCGTTAATGATGTCGCCACAACAACCGCTGAACTTAATAACAAGTTAAGTGCAGCTTTGACATTCCAAATCATGTGTGTGGATGGATACCCTGAAGCACACCAATCCACAGTGCAAAGCGCCTTGTAGAAAACAGAGGAACACACCACCAATTCTCTCGTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334568" ref_strand="+" ref_description="SGN-E334568 [cTOD-23-C17]">
      <seq>aataaataaaacaaaaaaaaaagaacaaataaataaactaagcaccaaataaagcatcatcttggtgtaacatctctgccttggtttgggatccagggcagagatctttttaatctctgtctctattccggactcgaatccaaaatggcgtttcaagattttgatcaaatttcagagcggaggaagctcgagagacagcaaaagatgaagaagaggataatgattggtgttgtattgctactcctcattctcattgctgttgctgcttctgttgtctattttgttgtgtttaaaaacaagagcggtgattcctcctccgctagtaaatctaataagaacgcgtcaacgcctcctccaaaagaaactgaaacaccgactcctaaggctgatgcatcacctcctccacctgaggctgctgatacagcaccaccttctgatgaaggtggtgctgctgcccctccaccaaatgtggacggagctgcagcaccggctggggatgcagcacctgctgcaccatcacccgagggtggcaacgcagcagcagccccagccccctcaccacaaggtgaaggagctatgggagcaatatgcgcgggaacagatttcagtcaaagttgtggggacattctatcnaaaagtgtacaagcaaatgcctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="25576" stop="24319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25276" g_stop="24619" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E334568" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25276" e_stop="24619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAATAAAACAAAAAAAAAAGAACAAATAAATAAACTAAGCACCAAATAAAGCATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTTCTGTTGTCTATTTTGTTGTGTTTAAAAACAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTCCAAAAGAAACTGAAACACCGACTCCTAAGGCTGATGCATCACCTCCTCCACCTGAGGCTGCTGATACAGCACCACCTTCTGATGAAGGTGGTGCTGCTGCCCCTCCACCAAATGTGGACGGAGCTGCAGCACCGGCTGGGGATGCAGCACCTGCTGCACCATCACCCGAGGGTGGCAACGCAGCAGCAGCCCCAGCCCCCTCACCACAAGGTGAAGGAGCTATGGGAGCAATATGCGCGGGAACAGATTTCAGTCAAAGTTGTGGGGACATTCTATCAAAAGTTGTACAAGCAAATGCCTCTG</genome_strand>
        <mrna_strand>AATAAATAAAACAAAAAAAAAAGAACAAATAAATAAACTAAGCACCAAATAAAGCATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTTCTGTTGTCTATTTTGTTGTGTTTAAAAACAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTCCAAAAGAAACTGAAACACCGACTCCTAAGGCTGATGCATCACCTCCTCCACCTGAGGCTGCTGATACAGCACCACCTTCTGATGAAGGTGGTGCTGCTGCCCCTCCACCAAATGTGGACGGAGCTGCAGCACCGGCTGGGGATGCAGCACCTGCTGCACCATCACCCGAGGGTGGCAACGCAGCAGCAGCCCCAGCCCCCTCACCACAAGGTGAAGGAGCTATGGGAGCAATATGCGCGGGAACAGATTTCAGTCAAAGTTGTGGGGACATTCTATCNAAAAGTGTACAAGCAAATGCCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362393" ref_strand="+" ref_description="SGN-E362393 [cLPP-10-F2]">
      <seq>tcaagttccactaaataagagggaataaacagagaaataaacaaaaaaaaaagaacaaataaataagctaaacaccaaataaaacatcatcttggtgtaacatctctgacttggtttgggatccagggcagagatctttttaatctctgtctctattccggactcgaatccaaaatggcgtttcaagattttgatcaaatttcagagcggaggaagctcgagagacagcaaaagatgaagaagaggataatgattggtgttgtattgctactcctcattctcattgctgttgctgctgctgaagtctattttgttgtgtttaaaaacaagagcggtgattcctcctccgctagtaaatctaataagaacgcgtcaacgcctcctccaaaagaaactgaaacagcgactcctaaggttgatgcatcacctcctccacctgaggctgctgatacaacaccaccttctgataaaggtggtgctactgcccctccaccaaatgtggacggagctccagcaccggctggggatgcagcacctcctgcaccaccacctgatggtgctgcagcagcaccgactggggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="25584" stop="24431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25311" g_stop="24748" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E362393" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25311" e_stop="24748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTTCCACTAAATAAGAGGGAATAAACAGAGAAATAAATAAAACAAAAAAAAAAGAACAAATAAATAAACTAAGCACCAAATAAAGCATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTTCTGTTGTCTATTTTGTTGTGTTTAAAAACAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTCCAAAAGAAACTGAAACACCGACTCCTAAGGCTGATGCATCACCTCCTCCACCTGAGGCTGCTGATACAGCACCACCTTCTGATGAAGGTGGTGCTGCTGCCCCTCCACCAAATGTGGACGGAGCTGCAGCACCGGCTGGGGATGCAGCACCTGCTGCACCATCACCCGAGGGTG</genome_strand>
        <mrna_strand>TCAAGTTCCACTAAATAAGAGGGAATAAACAGAG----AAAT-AAACAAAAAAAAAAGAACAAATAAATAAGCTAAACACCAAATAAAACATCATCTTGGTGTAACATCTCTGACTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTGCTGAAGTCTATTTTGTTGTGTTTAAAAACAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTCCAAAAGAAACTGAAACAGCGACTCCTAAGGTTGATGCATCACCTCCTCCACCTGAGGCTGCTGATACAACACCACCTTCTGATAAAGGTGGTGCTACTGCCCCTCCACCAAATGTGGACGGAGCTCCAGCACCGGCTGGGGATGCAGCACCTCCTGCACCACCACCTGATGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360157" ref_strand="+" ref_description="SGN-E360157 [cLPP-14-L16]">
      <seq>aaataaacaaaaaaaaaagaacaaataaataagctaaacaccaaataaaacatcatcttggtgtaacatctctgccttggtttgggatccagggcagagatctttttaatctctgtctctattccggactcgaatccaaaatggcgtttcaagattttgatcaaatttcagagcggaggaagctcgagagacagcaaaagatgaagaagaggataatgattggtgttgtattgctactcctcattctcattgctgttgctgctgctgttgtctattttgttgtgtttaaaaacaagagcggtgattcctcctccgctagtaaatctaataagaacgcgtcaacgcctcctccaaaagaaactgaaacagcgactcctaaggttgatgcatcacctcctccacctgaggctgctgatacaacaccaccttctgataaaggtggtgctactgcccctccaccaaatgtggacggagctccagcaccggctggggatgcagaacctcctgcaccaccacctgatggtgctgcagcagcaccgactggggatgcagcaccttctgcaccatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="25573" stop="24431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25273" g_stop="24748" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E360157" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25273" e_stop="24748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAAACAAAAAAAAAAGAACAAATAAATAAACTAAGCACCAAATAAAGCATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTTCTGTTGTCTATTTTGTTGTGTTTAAAAACAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTCCAAAAGAAACTGAAACACCGACTCCTAAGGCTGATGCATCACCTCCTCCACCTGAGGCTGCTGATACAGCACCACCTTCTGATGAAGGTGGTGCTGCTGCCCCTCCACCAAATGTGGACGGAGCTGCAGCACCGGCTGGGGATGCAGCACCTGCTGCACCATCACCCGAGGGTG</genome_strand>
        <mrna_strand>AAATA-AACAAAAAAAAAAGAACAAATAAATAAGCTAAACACCAAATAAAACATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTGCTGTTGTCTATTTTGTTGTGTTTAAAAACAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTCCAAAAGAAACTGAAACAGCGACTCCTAAGGTTGATGCATCACCTCCTCCACCTGAGGCTGCTGATACAACACCACCTTCTGATAAAGGTGGTGCTACTGCCCCTCCACCAAATGTGGACGGAGCTCCAGCACCGGCTGGGGATGCAGAACCTCCTGCACCACCACCTGATGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330095" ref_strand="+" ref_description="SGN-E330095 [cTOD-5-I24]">
      <seq>ataaacagagaaattaattaaacaaaaaaaaaagaacaaataaataaactaagcaccaaataaagcatcatcttggtgtaacatctctgccttggtttgggatccagggcagagatctttttaatctctgtctctattccggactcgaatccaaaatggcgtttcaagattttgatcaaatttcagagcggaggaagctcgagagacagcaaaagatgaagaagaggataatgattggtgttgtattgctactcctcattctcattgctgttgctgcttctgttgtctattttgttgtgtttaaaaacaagagcggtgattcctcctccgctagtaaatctaataagaacgcgtcaacgcctcctccaaaagaaactgaaacaccgactcctaaggctgatgcatcacctcctccacctgaggctgctgatacagcaccaccttctgatgaaggtggtgctgctgcccctgcaccagatgtggacggagctgcatcaccggctggagatgcagcacctgctgcaccatcacccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="25587" stop="24454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25287" g_stop="24754" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E330095" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25287" e_stop="24754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAACAGAGAAATAAATAAAACAAAAAAAAAAGAACAAATAAATAAACTAAGCACCAAATAAAGCATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTTCTGTTGTCTATTTTGTTGTGTTTAAAAACAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTCCAAAAGAAACTGAAACACCGACTCCTAAGGCTGATGCATCACCTCCTCCACCTGAGGCTGCTGATACAGCACCACCTTCTGATGAAGGTGGTGCTGCTGCCCCTCCACCAAATGTGGACGGAGCTGCAGCACCGGCTGGGGATGCAGCACCTGCTGCACCATCACCCG</genome_strand>
        <mrna_strand>ATAAACAGAGAAATTAATTAAACAAAAAAAAAAGAACAAATAAATAAACTAAGCACCAAATAAAGCATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTTCTGTTGTCTATTTTGTTGTGTTTAAAAACAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTCCAAAAGAAACTGAAACACCGACTCCTAAGGCTGATGCATCACCTCCTCCACCTGAGGCTGCTGATACAGCACCACCTTCTGATGAAGGTGGTGCTGCTGCCCCTGCACCAGATGTGGACGGAGCTGCATCACCGGCTGGAGATGCAGCACCTGCTGCACCATCACCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334650" ref_strand="+" ref_description="SGN-E334650 [cTOD-23-D7]">
      <seq>aataaataaaacaaaaaaaaaagaacaaataaataaactaagcaccaaataaagcatcatcttggtgtaacatctctgccttggtttgggatccagggcagagatctttttaatctctgtctctattccggactcgaatccaaaatggcgtttcaagattttgatcaaatttcagagcggaggaagctcgagagacagcaaaagatgaagaagaggataatgattggtgttgtattgctactcctcattctcattgctgttgctgcttctgttgtctattttgttgtgtttaaaaacaagagcggtgattcctcctccgctagtaaatctaataagaacgcgtcaacgcctcctccaaaagaaactgaaacaccgactcctaaggctgatgcatcacctcctccacctgaggctgctgatacagcaccaccttctgatgaaggtggtgctgctgcccctccaccaaatgtggacggagctgcatcaccggctggggatgcagcacctgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="25576" stop="24465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25276" g_stop="24765" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E334650" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25276" e_stop="24765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAATAAAACAAAAAAAAAAGAACAAATAAATAAACTAAGCACCAAATAAAGCATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTTCTGTTGTCTATTTTGTTGTGTTTAAAAACAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTCCAAAAGAAACTGAAACACCGACTCCTAAGGCTGATGCATCACCTCCTCCACCTGAGGCTGCTGATACAGCACCACCTTCTGATGAAGGTGGTGCTGCTGCCCCTCCACCAAATGTGGACGGAGCTGCAGCACCGGCTGGGGATGCAGCACCTGCTGC</genome_strand>
        <mrna_strand>AATAAATAAAACAAAAAAAAAAGAACAAATAAATAAACTAAGCACCAAATAAAGCATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTTCTGTTGTCTATTTTGTTGTGTTTAAAAACAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTCCAAAAGAAACTGAAACACCGACTCCTAAGGCTGATGCATCACCTCCTCCACCTGAGGCTGCTGATACAGCACCACCTTCTGATGAAGGTGGTGCTGCTGCCCCTCCACCAAATGTGGACGGAGCTGCATCACCGGCTGGGGATGCAGCACCTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363813" ref_strand="+" ref_description="SGN-E363813 [cLPP-3-D4]">
      <seq>gggaataaacagagaaataaacaaaaaaaaaagaacaaataaataagctaaacaccaaataaaacatcatcttggtgtaacatctctgccttggtttgggatccagggcagagatctttttaatctctgtctctattccggactcgaatccaaaatggcgtttcaagattttgatcaaatttcagagcggaggaagctcgagagacagcaaaagatgaagaagaggataatgattggtgttgtattgctactcctcattctcattgctgttgctgctgctgttgtctattttgttgtgtttaaaaacaagagcggtgattcctcctccgctagtaaatctaataagaacgcgtcaacgcctcctccaaaagaaactgaaacagcgactcctaaggttgatgcatcacctcctccacctgaggctgctgatacaacaccaccttctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="25584" stop="24539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25291" g_stop="24839" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E363813" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25291" e_stop="24839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAATAAACAGAGAAATAAATAAAACAAAAAAAAAAGAACAAATAAATAAACTAAGCACCAAATAAAGCATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTTCTGTTGTCTATTTTGTTGTGTTTAAAAACAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTCCAAAAGAAACTGAAACACCGACTCCTAAGGCTGATGCATCACCTCCTCCACCTGAGGCTGCTGATACAGCACCACCTTCTGAT</genome_strand>
        <mrna_strand>GGGAATAAACAGAGAAA----TAAA-CAAAAAAAAAAGAACAAATAAATAAGCTAAACACCAAATAAAACATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTGCTGTTGTCTATTTTGTTGTGTTTAAAAACAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTCCAAAAGAAACTGAAACAGCGACTCCTAAGGTTGATGCATCACCTCCTCCACCTGAGGCTGCTGATACAACACCACCTTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363798" ref_strand="+" ref_description="SGN-E363798 [cLPP-3-J17]">
      <seq>cactaaataagagggaataaacagagaaataaacaaaaaaaaaagaacaaataaataagctaaacaccaaataaaacatcatcttggtgtaacatctctgccttggtttgggatccagggcagagatctttttaatctctgtctctattccggactcgaatccaaaatggcgtttcaagattttgatcaaatttcagagcggaggaagctcgagagacagcaaaagatgaagaagaggataatgattggtgttgtattgctactcctcattctcattgctgttgctgctgctgttgtctattttgttgtgtttaaaaacaagagcggtgattcctcctccgctagtaaatctaataagaacgcgtcaacgcctcctccaaaagaaactgaaacagcgactcctaaggttgatgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="25584" stop="24582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25303" g_stop="24882" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E363798" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25303" e_stop="24882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTAAATAAGAGGGAATAAACAGAGAAATAAATAAAACAAAAAAAAAAGAACAAATAAATAAACTAAGCACCAAATAAAGCATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTTCTGTTGTCTATTTTGTTGTGTTTAAAAACAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTCCAAAAGAAACTGAAACACCGACTCCTAAGGCTGATGCATC</genome_strand>
        <mrna_strand>CACTAAATAAGAGGGAATAAACAGAG----AAAT-AAACAAAAAAAAAAGAACAAATAAATAAGCTAAACACCAAATAAAACATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTGCTGTTGTCTATTTTGTTGTGTTTAAAAACAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTCCAAAAGAAACTGAAACAGCGACTCCTAAGGTTGATGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361902" ref_strand="+" ref_description="SGN-E361902 [cLPP-12-P20]">
      <seq>agagaaataaacaaaaaaaaaagaacaaataaataagctaaacaccaaataaaacatcatcttggtgtaacatctctgccttggtttgggatccagggcagagatctttttaatctctgtctctattccggactcgaatccaaaatggcgtttcaagattttgatcaaatttcagagcggaggaagctcgagagacagcaaaagatgaagaagaggataatgattggtgttgtattgctactcctcattctcattgctgttgctgctgctgttgtctattttgttgtgtttaaaaacaagagcggtgattcctcctccgctagtaaatctaataagaacgcgtcaacgcctcctccaaaagaaactgaaacagcgactcctaaggttgatgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="25577" stop="24583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25277" g_stop="24883" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E361902" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25277" e_stop="24883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAATAAAACAAAAAAAAAAGAACAAATAAATAAACTAAGCACCAAATAAAGCATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTTCTGTTGTCTATTTTGTTGTGTTTAAAAACAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTCCAAAAGAAACTGAAACACCGACTCCTAAGGCTGATGCAT</genome_strand>
        <mrna_strand>AGAGAAATAAA-CAAAAAAAAAAGAACAAATAAATAAGCTAAACACCAAATAAAACATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTGCTGTTGTCTATTTTGTTGTGTTTAAAAACAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTCCAAAAGAAACTGAAACAGCGACTCCTAAGGTTGATGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364550" ref_strand="+" ref_description="SGN-E364550 [cLPP-18-N23]">
      <seq>agggaataaacagagaaataaacaaaaaaaaaagaacaaataaataagctaaacaccaaataaaacatcatcttggtgtaacatctctgccttggtttgggatccagggcagagatctttttaatctctgtctctattccggactcgaatccaaaatggcgtttcaagattttgatcaaatttcagagcggaggaagctcgagagacagcaaaagatgaagaagaggataatgattggtgttgtattgctactcctcattctcattgctgttgctgctgctgttgtctattttgttgtgtttaaaaaccaagagcggtgattcctcctccgctagtaaatctaataagaacgcgtcaacgcctcctccaaaagaaaactgaaacagcgaatcctaaggttgatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="25584" stop="24584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25292" g_stop="24884" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E364550" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25292" e_stop="24884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAATAAACAGAGAAATAAATAAAACAAAAAAAAAAGAACAAATAAATAAACTAAGCACCAAATAAAGCATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTTCTGTTGTCTATTTTGTTGTGTTTAAAAA-CAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTCCAAAAG-AAACTGAAACACCGACTCCTAAGGCTGATGCA</genome_strand>
        <mrna_strand>AGGGAATAAACAGAGAA----ATAA-ACAAAAAAAAAAGAACAAATAAATAAGCTAAACACCAAATAAAACATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTGCTGTTGTCTATTTTGTTGTGTTTAAAAACCAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTCCAAAAGAAAACTGAAACAGCGAATCCTAAGGTTGATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361568" ref_strand="+" ref_description="SGN-E361568 [cLPP-6-L5]">
      <seq>tcaagttccactaaataagagggaataaacagagaaataaacaaaaaaaaaaagaacaaataaataagctaaacaccaaataaaacatcatcttggtgtaacatctctgccttggtttgggatccagggcagagatctttttaatctctgtctctattccggactcgaatccaaaatggcgtttcaagattttgatcaaatttcagagcggaggaagctcgagagacagcaaaagatgaagaagaggataatgattggtgttgtattgctactcctcattctcattgctgttgctgctgctgttgtctattttgttgtgtttaaaaacaagagcggtgattcctcctccgctagtaaatctaataagaacgcgtcaacgcctccttcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="25611" stop="24616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25311" g_stop="24916" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E361568" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25311" e_stop="24916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTTCCACTAAATAAGAGGGAATAAACAGAGAAATAAATAAAACAAAAAAAAAAGAACAAATAAATAAACTAAGCACCAAATAAAGCATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTTCTGTTGTCTATTTTGTTGTGTTTAAAAACAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTCCAAAAG</genome_strand>
        <mrna_strand>TCAAGTTCCACTAAATAAGAGGGAATAAACAGAGAAAT--A-AACA-AAAAAAAAAAGAACAAATAAATAAGCTAAACACCAAATAAAACATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTGCTGTTGTCTATTTTGTTGTGTTTAAAAACAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTTCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363118" ref_strand="+" ref_description="SGN-E363118 [cLPP-19-C12]">
      <seq>cagagaaataaacaaaaaaaaaaagaacaaataaataagctaaacaccaaataaaacatcatcttggtgtaacatctctgccttggtttgggatccagggcagagatctttttaatctctgtctctattccggactcgaatccaaaatggcgtttcaagattttgatcaaatttcaaagcggaggaagctcgagagacagcaaaagatgaagaagaggataatgattggtgttgtattgctactcctcattctcattgctgttgctgctgctgttgtctattttgttgtgtttaaaaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="25577" stop="24677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25278" g_stop="24977" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E363118" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25278" e_stop="24977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATAAATAAAACAAAAAAAAAAGAACAAATAAATAAACTAAGCACCAAATAAAGCATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTTCTGTTGTCTATTTTGTTGTGTTTAAAAACAAG</genome_strand>
        <mrna_strand>CAGAGAAATAAACAAAAAAAAAAAGAACAAATAAATAAGCTAAACACCAAATAAAACATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAAAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTGCTGTTGTCTATTTTGTTGTGTTTAAAAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397127" ref_strand="+" ref_description="SGN-E397127 [TUS-45-A15]">
      <seq>aattaacagacaaataaataaaacaaaaaaaaaagaacaaataaataaactaagcaccaaataaagcatcatcttggtgtaacatctctgccttggtttgggatccagggcagagatctttttaatctctgtctctattccggactctaatccaagaatggcgtttcaagattttgatcaaatttcagagcggaggatgctcgagagacagcaaaagatgaagaagaggataatgattggtgttgtattgctactcctcattctcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="25588" stop="24721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25288" g_stop="25021" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E397127" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25288" e_stop="25021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAACAGAGAAATAAATAAAACAAAAAAAAAAGAACAAATAAATAAACTAAGCACCAAATAAAGCATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAA-AATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTG</genome_strand>
        <mrna_strand>AATTAACAGACAAATAAATAAAACAAAAAAAAAAGAACAAATAAATAAACTAAGCACCAAATAAAGCATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCTAATCCAAGAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGATGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397446" ref_strand="+" ref_description="SGN-E397446 [TUS-45-B16]">
      <seq>aataaacagagaaataaataaaacaaaaaaaaaagaacaaataaataaactaagcaccaaataaagcatcatcttggtgtaacatctctgccttggtttgggatccagggcagagatctttttaatctctgtctctattccggactcgaatccaaaatggcgtttcaagattttgatcaaatttcagagcggaggaagctcgagagacagcaaaagatgaagaagaggataatgattggtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="25588" stop="24746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25288" g_stop="25046" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E397446" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>243</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25288" e_stop="25046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAACAGAGAAATAAATAAAACAAAAAAAAAAGAACAAATAAATAAACTAAGCACCAAATAAAGCATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTT</genome_strand>
        <mrna_strand>AATAAACAGAGAAATAAATAAAACAAAAAAAAAAGAACAAATAAATAAACTAAGCACCAAATAAAGCATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268499" ref_strand="+" ref_description="SGN-E268499 [cLEI-13-K15]">
      <seq>ttataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgaggtttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="53778" stop="52772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53478" g_stop="53072" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E268499" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53478" e_stop="53072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAATTGCAGACTTAAAGGAGTACAAAATCACAAAGATTTTTGTCTCCACAAGAAACACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTATGAAAATCAGAAATTACTGGTTGTAATAAATAATTCAGAAACACGAAGTAACTAAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGTAAAAAATAATTGAATCTGTAAAACTTACCAGAATCTGAAATACTCTTTTAGATAATTTAGGAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCAAGTATCCGAGGTTTGATTTGGAATATAACCTCTCAGGGTAAAATGATCTTAATTAGTAGAGTATAGATACC-AAAACTCTAATGTCAGCG</genome_strand>
        <mrna_strand>TTATAATTGCAGACTTAAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGT-AAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242172" ref_strand="+" ref_description="SGN-E242172 [cLED-37-C23]">
      <seq>gatagtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgtgattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcgcgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataattgtggcaaggctggtcatagatcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="53628" stop="54622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53928" g_stop="54322" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E242172" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53928" e_stop="54322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTAAAACTGTTGGATCACAAATGCAGGAACTTCAACTTCTTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATTAAGATTTTCAAGTGGCTGTAATGATCGAGAAGTTGCCTCCTTCGTGGAATAATATCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGAAAGATAACAGAAATGCCGAAAAGAAGTCTTGTAAGAGTTCAATAATCATTGGAGTTAATATTGTTGAAAAATCTCCTACCAAAGACAAAAAGAGAAAGAAGTCTAACGGGCAGAAGTTAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</genome_strand>
        <mrna_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGTGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242208" ref_strand="+" ref_description="SGN-E242208 [cLED-37-E10]">
      <seq>gtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgggattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcccgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="53632" stop="54594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53932" g_stop="54294" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E242208" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53932" e_stop="54294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAACTGTTGGATCACAAATGCAGGAACTTCAACTTCTTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATTAAGATTTTCAAGTGGCTGTAATGATCGAGAAGTTGCCTCCTTCGTGGAATAATATCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGAAAGATAACAGAAATGCCGAAAAGAAGTCTTGTAAGAGTTCAATAATCATTGGAGTTAATATTGTTGAAAAATCTCCTACCAAAGACAAAAAGAGAAAGAAGTCTAACGGGCAGAAGTTAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATT</genome_strand>
        <mrna_strand>GTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGGGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCCCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578039" ref_strand="+" ref_description="SGN-E578039 [LE08DB10]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="57427" stop="58734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57727" g_stop="58434" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E578039" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57727" e_stop="58434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGGTCTTCATTACGAAATACTTCAACTTTTGGAATTTGGGTACTGGGATCACTTCTCTGATCTTCGCGACGAACCTGCAGGACGGACCGTCATATCCATGACGGACCGT--C-A-----GTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGTTGCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTT-TTCGCTCAAAATCTCCGCATTCAGCTTTAGACAGATTTCCTGCAAAACAAAGAAAAACTTATATCAAAATTAGCACAAAAAGGGCTTTCGGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATTCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGACTAATCCCATCAAATCTATGCATGCTATCACTATTAGGCTTGACTTTTGTGGGATTCGAACATGACACAGATTCACCATGCACTAACGCCTATCCTCTTCAATTGCTCACCGAGGTGCTAACAATTCCGGTATTGCAACTAGTGTCCTCGCTTTAGAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAA-GGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350708" ref_strand="+" ref_description="SGN-E350708 [cTOS-7-K22]">
      <seq>ggggatttagtgcttctattcaattccagattgcgcttgtttccaggcaaactcaagtccaaatggactggtccttacacggttacccaactattccctcatggagcagttgagttggaaacgaaggagggtgtgcggttcaaggtgaatggacagcgcataaaaatctatctcggacatgctgaatcggcgaatgaagtgatcgaggcataccatcttgatgaagtctgagtaatcaagtggccccagtcgtgccgcgacattaaatcaggcgcttgttgggaggcaacccaatacttatcgtctttttaataatggtagcatttttttctataaatgggttttaaatttgcaggcacatcaccaagaaattctgcagaaaactactccgcagtagccactgacggatacaacaacggaccgtcgtatgcatccgtcacaccaggtatgtatttctgtcatttttgaaattagggcgcatacgacggaacctacgatggggcgtcgcaagtgcgatggaccgtcgtcggggaaccgttgcgcgattaatgaaatctnaccgacccacccggctggaccttttcaaatctgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="63949" stop="62735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63649" g_stop="63035" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E350708" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.035" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63649" e_stop="63035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGATTTAGTGCTTCTATTCAATTCCAGATTGCGCTTGTTTCCAGGCAAACTCAAGTCCAAATGGACTGGTCCTTACACGGTTACCCAACTATTCCCTCATGGAGCAGTCGAGTTGGAAACCAAGGAGGGTGTGCTGTTCAAGGTGAATGGACAGCGCATAAAAATCTATCTAGGGCATGCTGAATCGGCGAATGAAGTGATCGAGGCATACCATCTTGATGAAGTCTGAGTAATCAAGTGGCCCCAGTCGTGCCGCGACGTTAAATCTGGCGCTTGTTGGGAGGCAACCCAATACTTGTCGTCTTTTTAATAATGGTAGCA-T-TTTTCTATAAATGGGTTTTAAATTTGCAGGCACATCACCACGAAATTCTGCAGAAAACTACTCCGCAGTAGCCACTGACGGATACAACGACGGACCATCGCGTTTGAAACGGACCGTTGTATGCACCGTCACACCAGGTACGTATTTCTGTCATTTTTGAAACTAGGGCACACACGACGGACACCACTACGGGGCGTCGCATGTGCGACGGACCGTCGTCGGGGTACCGTCGCGCGATTAATGAAATTAACCCGACCCGACCCGGCTGGATCCCTTTTCCAAAATTTGACC</genome_strand>
        <mrna_strand>GGGGATTTAGTGCTTCTATTCAATTCCAGATTGCGCTTGTTTCCAGGCAAACTCAAGTCCAAATGGACTGGTCCTTACACGGTTACCCAACTATTCCCTCATGGAGCAGTTGAGTTGGAAACGAAGGAGGGTGTGCGGTTCAAGGTGAATGGACAGCGCATAAAAATCTATCTCGGACATGCTGAATCGGCGAATGAAGTGATCGAGGCATACCATCTTGATGAAGTCTGAGTAATCAAGTGGCCCCAGTCGTGCCGCGACATTAAATCAGGCGCTTGTTGGGAGGCAACCCAATACTTATCGTCTTTTTAATAATGGTAGCATTTTTTTCTATAAATGGGTTTTAAATTTGCAGGCACATCACCAAGAAATTCTGCAGAAAACTACTCCGCAGTAGCCACTGACGGATACAACAACGG---A-C-CG--T----CGTA----TGCAT---CCGTCACACCAGGTATGTATTTCTGTCATTTTTGAAATTAGGGCGCATACGACGGAACCTACGATGGGGCGTCGCAAGTGCGATGGACCGTCGTCGGGGAACCGTTGCGCGATTAATGAAATCTNACCGACCC-ACCCGGCTGGA--CCTTTT-C-AAATCTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577717" ref_strand="+" ref_description="SGN-E577717 [LE15CC06]">
      <seq>ctctatgactctagtacctagcaaataggagcaaaatatctcaaaagcaaagactactgcgaggagttcatgctcagtcactgtgtagttcttctgggcttcatttagggctttactagcatagtaaattgggtgaaggattttgtttcttctctgtcccaatactacaccaagagccaccccactagcatcgcacattacctcaaatggacttttccaatccggagaaataatgataggtgcagacactaacttctcttttagctcactgaatgctttaagacaggactcatcaaaacaaaatttacattctttcttcagtaatttgcacaatgggtgtgcaatctttgaaaagtctttgatgaatctccgataaaaacctgcatgcccaagaaagcttctcacacctttcatagagatcggtgggggaagtctctctattacctcaactttagctcgatcaacctctattcccttttctgaaatgcgatgacccaacacaatacctttttttaccatgaaatgacacttttcccagtttagtaccagattgcagtcttcacatctcttaagaacctcagattaattggtcaagcatcgctcaattgaatcaccaaccacagaaaaatcatccataaaaacctctatagtatcctccaccatgtcagaaaatattgacatcatatatctctgaaaggttgcgggtgcattgcacaacctaaatggcattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="64642" stop="65974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64942" g_stop="65674" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E577717" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64942" e_stop="65674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTATGACTCTAGTACCTAGCAAATAGGAGCGAAATTTCTCAAAAGCAAAGACTACTGCGAGGAGTTCTTGCTCAGTCACTGTGTAGTTCTTCTGGGCTTCATTTAGGGCTTTACTAGCATAGTAAATTGGGTGAAGGATTTTGTTTCTTCTCTGTCCCAATACTACACCAAGAGCCACCCCACTAGAATCGCACATTACCTCAAATGGACTGTTCCAATCCGGAGAAATAATGATAGGTGCAGACACTAACTTCTCTTTTAGCTCACTGAATGCTTTAAGACGGGACTCATCAAAACAAAATTTACATTCTTTC-TCAGTAATTTGCACAATGGGTGTGCAATCTTTGAGAAGTCTTTGATGAATCTCCGATAAAAACCTGCATGCCCAAGAAAGCTTCTCATACCTTTCACAGAGATCGGCGGGGGAAGTCTCTCTATTACCTCAACTTTAGCTCGATCAACCTCTATACCCTTTTCTGAAATGCGATGACCCAACACAATACCCTCTTTCACCATGAAATGACACTTTTCCCAGTTTAGTACTAGATTGCAGTCTTCACATCTCTTAAGAACCTCAGATAAATTGTTCAAGCATCGCTCAAATGAATCACCAACCACAGAAAAATCATCCATAAAAACCTCTATAGTATCCTCCACCATATCAGAAAATATTGACATCATACATCTCTGAAAGGTTGCGGGTGCATTGCACAACCCAAACGGCATTCTTC</genome_strand>
        <mrna_strand>CTCTATGACTCTAGTACCTAGCAAATAGGAGCAAAATATCTCAAAAGCAAAGACTACTGCGAGGAGTTCATGCTCAGTCACTGTGTAGTTCTTCTGGGCTTCATTTAGGGCTTTACTAGCATAGTAAATTGGGTGAAGGATTTTGTTTCTTCTCTGTCCCAATACTACACCAAGAGCCACCCCACTAGCATCGCACATTACCTCAAATGGACTTTTCCAATCCGGAGAAATAATGATAGGTGCAGACACTAACTTCTCTTTTAGCTCACTGAATGCTTTAAGACAGGACTCATCAAAACAAAATTTACATTCTTTCTTCAGTAATTTGCACAATGGGTGTGCAATCTTTGAAAAGTCTTTGATGAATCTCCGATAAAAACCTGCATGCCCAAGAAAGCTTCTCACACCTTTCATAGAGATCGGTGGGGGAAGTCTCTCTATTACCTCAACTTTAGCTCGATCAACCTCTATTCCCTTTTCTGAAATGCGATGACCCAACACAATACCTTTTTTTACCATGAAATGACACTTTTCCCAGTTTAGTACCAGATTGCAGTCTTCACATCTCTTAAGAACCTCAGATTAATTGGTCAAGCATCGCTCAATTGAATCACCAACCACAGAAAAATCATCCATAAAAACCTCTATAGTATCCTCCACCATGTCAGAAAATATTGACATCATATATCTCTGAAAGGTTGCGGGTGCATTGCACAACCTAAATGGCATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330288" ref_strand="+" ref_description="SGN-E330288 [cTOD-4-J5]">
      <seq>ttttgtatcatccggggaaggccaatgttgtggccgatgctttgagtaggaagactcatagcatggggagtcttgcatctcttagtgttgaggaaagaccattggctagagatgttcaattgttagctaacagtcttgtccgattacagatctcagaggagagtgatgggatgattgcttttattgaggctcgatcttctttagtcaagcagattcgtgcacaccagtttgatgacgaaaaattatgtctcattcgagacaaagtattgagaggggaagctaaggaggttgtccttgattctgatggtgtcttgaggatcggaggcaggatttgtgtgcccaagacaggcgatttgattagattgatccttgaggaggcccattgttctcgatattctatgcatccgggagaggcgaaaatgtatcatgatctgagtcagcattactggtggtgtgggatgaagagagatattacagactttgttttgaggtgtttgacttgccagttggtcaagtgtgagcaccagtggcctgggggtgtatctcaaaggatgcctattcttacttggacgtgggagtggattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="83596" stop="82409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83296" g_stop="82709" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E330288" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83296" e_stop="82709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTATCATCCGGGGAAGGCCAATGTTGTGGCCGATGCTTTGAGTAGGAAGACTCATAGCATGGGGAGTCTTGCATCTCTTAGTATTGAGGAGAGACCATTGGCTAGAGATGTTCAATTGTTAGCTAACAGTCTTGTCCGATTGCAGATCTCAGAGGAGAGTGATGGGATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCAAGCAGATCCATGCACACTAGTTTAATGATGAAAAGTTATGTCTCATTCGAGACAAAGTATTGAGAGGGGAAACTAAGGAGGTTGTCCTTGACTCTGATGGTGTTTTGAGGATCAGAGGCAGGATTTGTGTGCCCAAGACAGGTGATTTGATTAGATTAATCCTTGAGGAGGCCCATTGTTCTCGGTATTCCATCCATCCGGGAGCAACGAATATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGAATGAAGAGAGATATTACAGACTTTGTTTCTAGGTGTTTGACTTGCCAGCAGGTCAAGTATGAGCACCAGCGGCCCGGGGGTGTATCTCAGAGGATGCCTATTCCTACTTGGAAGTGGGAGCGGATTACTA</genome_strand>
        <mrna_strand>TTTTGTATCATCCGGGGAAGGCCAATGTTGTGGCCGATGCTTTGAGTAGGAAGACTCATAGCATGGGGAGTCTTGCATCTCTTAGTGTTGAGGAAAGACCATTGGCTAGAGATGTTCAATTGTTAGCTAACAGTCTTGTCCGATTACAGATCTCAGAGGAGAGTGATGGGATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCAAGCAGATTCGTGCACACCAGTTTGATGACGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGAGGGGAAGCTAAGGAGGTTGTCCTTGATTCTGATGGTGTCTTGAGGATCGGAGGCAGGATTTGTGTGCCCAAGACAGGCGATTTGATTAGATTGATCCTTGAGGAGGCCCATTGTTCTCGATATTCTATGCATCCGGGAGAGGCGAAAATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTACAGACTTTGTTTTGAGGTGTTTGACTTGCCAGTTGGTCAAGTGTGAGCACCAGTGGCCTGGGGGTGTATCTCAAAGGATGCCTATTCTTACTTGGACGTGGGAGTGGATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279140" ref_strand="+" ref_description="SGN-E279140 [cLEL-4-H21](-)">
      <seq>gtgaaccgtacgagccatgacccgggccataagaacccttagatgtctggccaccctcaaatgtcggcatagatgcatgaataggtccccgctgctgaaaagaaccactcactctctgtgatcccctacctccagatgaggcaccctgaaattgacctgatatacgagctcttttagggtccccaaactcctctctctccatcaattctgcctctttggcggcgctcacaatagactggaaagaagtcccccctagatgtccgaaacacagctgacctgatagagaaagtcaatcccctcacaaatctacggatcctctctgtttcatttggaataatggccaacgcatgcctagacaactggcaaaaacgcgccttacactctgtaaccgataaaccatcctgtctcagactctcaactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="85119" stop="86143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85419" g_stop="85845" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E279140" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85419" e_stop="85845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAACCGTACGAGCTTTGACCCGGGCTATTAGAACCCTTAGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTTAAAAGAACCACTCACTCTCTGTGATCTCGTACCTCCAGATGAGACACCATGAAACTGGCCTGATATACGGGCACTTTCAGGGTCCCCAAACTCCTCTCTCTCCATCAATTCTGCCTCTTTGGCGGCGCTCACAATGGACTTGAAAGAAGCCCCCTCCCTAGATGCCCGAAACACAGCTGACCTTATAGAGAAAGTTAATCCCTTCACAAATCTGCGGATCCTCTCTGTCTCATTTGGAATAATGGTCAACGCATGCCTAGACAACTGGCAAAAACGCGCCTCATACTCTGTAACCGATAAACCATCCTGTCTCAAACTCTCAAACCTTAA</genome_strand>
        <mrna_strand>GTGAACCGTACGAGCCATGACCCGGGCCATAAGAACCCTTAGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCCAGATGAGGCACCCTGAAATTGACCTGATATACGAGCTCTTTTAGGGTCCCCAAACTCCTCTCTCTCCATCAATTCTGCCTCTTTGGCGGCGCTCACAATAGACTGGAAAGAAG-TCCC-CCCTAGATGTCCGAAACACAGCTGACCTGATAGAGAAAGTCAATCCCCTCACAAATCTACGGATCCTCTCTGTTTCATTTGGAATAATGGCCAACGCATGCCTAGACAACTGGCAAAAACGCGCCTTACACTCTGTAACCGATAAACCATCCTGTCTCAGACTCTCAACTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577887" ref_strand="+" ref_description="SGN-E577887 [LE08AH11]">
      <seq>ttgggtcggagcaccctctctagtacgagagtcatgtggtgtggtagtcgcaccaccaccctgataaaagccctctagaacacttaacaccctaaaaagtgtatcctgaagcaaaggtgtgactacaggatctggaggaacctggtcacctctgccatcaatttgaggttttgtagagacctctctagcacgacctctcactggtgctgctccacgtccacgacctctagctactatcgtactactagaacgacatctagctcgagacctacccctacccataactggggcctcaacaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="85966" stop="86868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86266" g_stop="86568" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E577887" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86266" e_stop="86568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTCTGAGCCCCCTCTCTAGTACGAGAGTCAAGTGGTGTGGTAGTCGCACCACCACCCTGAGAAAATCCCTCTAGCACACTTAACACCCTCAACAGTGTATCTTGAATCAAAGGTGTGACTACAGGATCTGAAGGAACCTGGTCCTCCCTGCCATCAATCTGAGGTTCTGTAGAGACCTCTCTAGCACGACCTCTCACTGGTGCTGCTCCACGTCCACGACCTCTAGCTACTGTCGTACTACTAGCACGGCCTCTAGCTCGAGATCTACCCCTACCCCTAGCTGGGGCCTCAACAACTGC</genome_strand>
        <mrna_strand>TTGGGTCGGAGCACCCTCTCTAGTACGAGAGTCATGTGGTGTGGTAGTCGCACCACCACCCTGATAAAAGCCCTCTAGAACACTTAACACCCTAAAAAGTGTATCCTGAAGCAAAGGTGTGACTACAGGATCTGGAGGAACCTGGTCACCTCTGCCATCAATTTGAGGTTTTGTAGAGACCTCTCTAGCACGACCTCTCACTGGTGCTGCTCCACGTCCACGACCTCTAGCTACTATCGTACTACTAGAACGACATCTAGCTCGAGACCTACCCCTACCCATAACTGGGGCCTCAACAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351174" ref_strand="+" ref_description="SGN-E351174 [cTOS-6-K13]">
      <seq>ttatatcgatcgaggttttgtttgtctagcaagtattgtgtaaaacgttgcagagatgagatttcaaaggtaaccaaaggtcagtgcattacaaaaggctggggtcgttattgcttctgttggcgcacaggggcctgccctcctaagccttaaatcaatcaataacaaaattaatgttatgcatggtgtgtgtgtgtgttatcaagaataaaaaacactatcaattctatcattagaattgtagtgattgtgaggaaattgtacttttatcattatgatggttggattggattttcttctttgggcatggtccctagtttttttaaagtcaatttaaataaattgtttatggtcattgtcattgactagactactatatgtaatatataatttgggttgcacttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="90526" stop="91530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90826" g_stop="91230" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="422"/>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E351174" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90826" e_stop="91230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATCGATCGAGGTTTTGTTTGTCTAGCAAGTATTGTGTAAAACGTTGCAGAGATGAGATTTCAAAGGTAACCAAAGGTCAGTGCATTACAAAAGGCTGGGGTCGTTATTGCTTCTGTTGGCGCACAGGGGCCTGCCCTCCTAAGCCTTAAATCAATCAATAACAAAATTAATGTTATGCATGGTGTGTGTGTGTGTTATCAAGAATAAAAAACACTATCAATTCTATCATTAGAATTGTAGTGATTGTGAGGAAATTGTACTTTTATCATTATGATGTTTGTATTGTATTTTCTTCTTTGGTCATGTTCCCTAGTTTTTTTAAAGTCAATTTAAATAAATTGTTTATGGTCATTGTCATTGACTAGACTACTATATGTAATATATAATTTGGGTTGCACTTA</genome_strand>
        <mrna_strand>TTATATCGATCGAGGTTTTGTTTGTCTAGCAAGTATTGTGTAAAACGTTGCAGAGATGAGATTTCAAAGGTAACCAAAGGTCAGTGCATTACAAAAGGCTGGGGTCGTTATTGCTTCTGTTGGCGCACAGGGGCCTGCCCTCCTAAGCCTTAAATCAATCAATAACAAAATTAATGTTATGCATGGTGTGTGTGTGTGTTATCAAGAATAAAAAACACTATCAATTCTATCATTAGAATTGTAGTGATTGTGAGGAAATTGTACTTTTATCATTATGATGGTTGGATTGGATTTTCTTCTTTGGGCATGGTCCCTAGTTTTTTTAAAGTCAATTTAAATAAATTGTTTATGGTCATTGTCATTGACTAGACTACTATATGTAATATATAATTTGGGTTGCACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356145" ref_strand="+" ref_description="SGN-E356145 [cTOS-20-K5]">
      <seq>ttatatcgatcgaggttttgtttgtctagcaagtattgtgtaaaacgttgcagagatgagatttcaaaggtaaccaaaggtcagtgcattacaaaaggctggggtcgttattgcttctgttggcgcacaggggcctgccctcctaagccttaaatcaatcaataacaaaattaatgttatgcatggtgtgtgtgtgtgttatcaagaataaaaaacactatcaattctatcattagaattgtagtgattgtgaggaaattgtacttttatcattatgatgtttgtattgtattttcttctttggtcatgttccctagtttttttaaagtcaatttaaataaattgtttatggtcattgtcattgactagactactatatgtaatatataatttgggttgcacttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="90526" stop="91530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90826" g_stop="91230" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="422"/>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E356145" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90826" e_stop="91230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATCGATCGAGGTTTTGTTTGTCTAGCAAGTATTGTGTAAAACGTTGCAGAGATGAGATTTCAAAGGTAACCAAAGGTCAGTGCATTACAAAAGGCTGGGGTCGTTATTGCTTCTGTTGGCGCACAGGGGCCTGCCCTCCTAAGCCTTAAATCAATCAATAACAAAATTAATGTTATGCATGGTGTGTGTGTGTGTTATCAAGAATAAAAAACACTATCAATTCTATCATTAGAATTGTAGTGATTGTGAGGAAATTGTACTTTTATCATTATGATGTTTGTATTGTATTTTCTTCTTTGGTCATGTTCCCTAGTTTTTTTAAAGTCAATTTAAATAAATTGTTTATGGTCATTGTCATTGACTAGACTACTATATGTAATATATAATTTGGGTTGCACTTA</genome_strand>
        <mrna_strand>TTATATCGATCGAGGTTTTGTTTGTCTAGCAAGTATTGTGTAAAACGTTGCAGAGATGAGATTTCAAAGGTAACCAAAGGTCAGTGCATTACAAAAGGCTGGGGTCGTTATTGCTTCTGTTGGCGCACAGGGGCCTGCCCTCCTAAGCCTTAAATCAATCAATAACAAAATTAATGTTATGCATGGTGTGTGTGTGTGTTATCAAGAATAAAAAACACTATCAATTCTATCATTAGAATTGTAGTGATTGTGAGGAAATTGTACTTTTATCATTATGATGTTTGTATTGTATTTTCTTCTTTGGTCATGTTCCCTAGTTTTTTTAAAGTCAATTTAAATAAATTGTTTATGGTCATTGTCATTGACTAGACTACTATATGTAATATATAATTTGGGTTGCACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353324" ref_strand="+" ref_description="SGN-E353324 [cTOS-15-K5]">
      <seq>atatcgatcgaggttttgtttgtctagcaagtattgtgtaaaacgttgcagagatgagatttcaaaggtaaccaaaggtcagtgcattacaaaaggctggggtcgttattgcttctgttggcgcacaggggcctgccctcctaagccttaaatcaatcaataacaaaattaatgttatgcatggtgtgtgtgtgtgttatcaagaataaaaaacactatcaattctatcattagaattgtagtgattgtgaggaaattgtacttttatcattatgatgtttgtattgtattttcttctttgggcatgttccctagtttttttaaagtcaatttaaataaattgtttatggtcattgtcatttgactagactactatatgtaatatataatttggggtgcactttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="90528" stop="91529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90828" g_stop="91230" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="405" polyA_stop="414"/>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E353324" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90828" e_stop="91230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCGATCGAGGTTTTGTTTGTCTAGCAAGTATTGTGTAAAACGTTGCAGAGATGAGATTTCAAAGGTAACCAAAGGTCAGTGCATTACAAAAGGCTGGGGTCGTTATTGCTTCTGTTGGCGCACAGGGGCCTGCCCTCCTAAGCCTTAAATCAATCAATAACAAAATTAATGTTATGCATGGTGTGTGTGTGTGTTATCAAGAATAAAAAACACTATCAATTCTATCATTAGAATTGTAGTGATTGTGAGGAAATTGTACTTTTATCATTATGATGTTTGTATTGTATTTTCTTCTTTGGTCATGTTCCCTAGTTTTTTTAAAGTCAATTTAAATAAATTGTTTATGGTCATTGTCA-TTGACTAGACTACTATATGTAATATATAATTTGGGTTGCACTTA</genome_strand>
        <mrna_strand>ATATCGATCGAGGTTTTGTTTGTCTAGCAAGTATTGTGTAAAACGTTGCAGAGATGAGATTTCAAAGGTAACCAAAGGTCAGTGCATTACAAAAGGCTGGGGTCGTTATTGCTTCTGTTGGCGCACAGGGGCCTGCCCTCCTAAGCCTTAAATCAATCAATAACAAAATTAATGTTATGCATGGTGTGTGTGTGTGTTATCAAGAATAAAAAACACTATCAATTCTATCATTAGAATTGTAGTGATTGTGAGGAAATTGTACTTTTATCATTATGATGTTTGTATTGTATTTTCTTCTTTGGGCATGTTCCCTAGTTTTTTTAAAGTCAATTTAAATAAATTGTTTATGGTCATTGTCATTTGACTAGACTACTATATGTAATATATAATTTGGGGTGCACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367395" ref_strand="+" ref_description="SGN-E367395 [cLPT-7-O24]">
      <seq>acaataaattttccactcccccccttggtatatatttagtaattaattcattattatcaaccaaatattttttatccattagtctcactagccaaaattaaactacatgcatatgcatgctcattattaataattaattaagtgtgggacgttaattattatgggtaacttattttgtaaagtactgattttggtacttttatgtataactactacttggcctttgataagctatgctgttgatgacaatttttttcaatcagaatgtttgcaagtgccaacatctgagtttttgggttctgataagtctaccatcaacattggtcgtgaagtcacttctttagtgtcaaaatttactagcttttttggcgattttcgactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="104092" stop="105075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104392" g_stop="104775" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E367395" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104392" e_stop="104775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATAAATTTTCCACTTCCCCCCTTTCTATATATTTATTAATTAATTCATTATTATCAACCAAATAATTTTTATCCATAAGTCTCACTAGCCAAAATTAAACTACATGCATATGCATGCTCATTATTAAAAATTAATTAAGTGTAGGACTTTAATGATTATGGGTAATTTATTCTGTAAAGTACTGATTTTGGTACTTTTATGTCTAACTACTACTTGTCCTTTGATAAGCTATGCTGTTGATGACAATTTTTTTCAATCAGAATGTTTGCAAGTGCCAACATCTGAGTTTTTGGGTTCTGTTAAGTCTACCATCAACATTGTTCGTGAAGTCACTTCTTTAGTGTCAAAATTTGCTAGCTTTTTTGGCGATTTTCGACTTTC</genome_strand>
        <mrna_strand>ACAATAAATTTTCCACTCCCCCCCTTGGTATATATTTAGTAATTAATTCATTATTATCAACCAAATATTTTTTATCCATTAGTCTCACTAGCCAAAATTAAACTACATGCATATGCATGCTCATTATTAATAATTAATTAAGTGTGGGACGTTAATTATTATGGGTAACTTATTTTGTAAAGTACTGATTTTGGTACTTTTATGTATAACTACTACTTGGCCTTTGATAAGCTATGCTGTTGATGACAATTTTTTTCAATCAGAATGTTTGCAAGTGCCAACATCTGAGTTTTTGGGTTCTGATAAGTCTACCATCAACATTGGTCGTGAAGTCACTTCTTTAGTGTCAAAATTTACTAGCTTTTTTGGCGATTTTCGACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347010" ref_strand="+" ref_description="SGN-E347010 [cTOF-25-G12]">
      <seq>tttaatgattatgggtaatttattctgtaaagtactgattttggtacttttatgtctaactactacttgtcctttgataagctatgctgttgatgacaatttttttcaatcagaatgtttgcaagtgccaacatctgagtttttgggttctgttaagtctaccatcaacattgttcgtgaagtcacttctttagtgtcaaaatttgctagcttttttggcgattttcgactttcgaatgccatttctgattgtcttgatctcttggatctctcagcagatgaacttacttggactcttactgctactcagaatcccaaaggaaaaaacaacagtacaggtaatctaagtgcagatttgaagaattatttaagcggagcattaattaatcaagatacatgcatcgaaggattcgagggtacaaatggactagtcaagaatttggttgcgggtaatctcaaccaagtctcatcattagtccgcaacattcttcttatggtccgacccgtctctaggaaaaacgtcttcccctctgaggccaatgccaaacgtgggaagccgtggcaattctcccgagaaagaaattaacgtcaaatgaagaagatcacaacttattcccttcgtggattaaacgaaaagatagaaggttattgcaagcatcaaattcgactaaaagagtattacagacgttgtagtagctcttgacggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="104242" stop="107686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104542" g_stop="104861" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104862" i_stop="106994" i_length="2133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106995" g_stop="107386" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="710" r_length="390" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E347010" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104542" e_stop="104861"/>
          <exon e_start="106995" e_stop="107386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATGATTATGGGTAATTTATTCTGTAAAGTACTGATTTTGGTACTTTTATGTCTAACTACTACTTGTCCTTTGATAAGCTATGCTGTTGATGACAATTTTTTTCAATCAGAATGTTTGCAAGTGCCAACATCTGAGTTTTTGGGTTCTGTTAAGTCTACCATCAACATTGTTCGTGAAGTCACTTCTTTAGTGTCAAAATTTGCTAGCTTTTTTGGCGATTTTCGACTTTCGAATGCCATTTCTGATTGTCTTGATCTCTTGGATCTCTCAGCAGATGAACTTACTTGGACTCTTACTGCTACTCAGAATCCCAAAGGTATCTATTTATCTATCTATATTACTTGAGTATTAAGTATTTTTTCGTTCTTAATCAAAGATTTCATCCTTAATGTGAGACTTTTAATAGAAATATAAATTTAATAGACTTCAATATGAATATTAGATACGAGCATCTTTAATTTGTTCATTTTTTATGAGTGTTATGCACTTTAGGAAAAGGTTAATGCACTTAATTTTTTGTGCTCTTTTTGAGATGCTTGCTTTAAAACTTTAATTTGCAATTAGGTGTCTGTCTTTGTTACTTTTATCTTTTTGGCCTGTTTTACGCTTTATTGGAGTACTACAAGTTTACTACTCCTTCTATTCACGGTTACTTGTTAAATTTTGAATTGACATGTCTATTATAAAATAATAATATTATTTTATTTTTATTAATAAATAGAATTTCAGACTAATTTATTCATTGTGTTTTTTAAAAACATACTCAACGTTAATAAGTTGAGAATATAATAGAAAAAGATATTATTTTTCTCTTATTTGTAAAAATTACAACTGAAAAAGTGAAACTATAAAATATTTAACAAATAAATAAAAGACCGAGGGAGTACTACTTTTGACTGTTTTGAGTTGGGACTTGGAACCTCCCACGTATAAAAAGTTTTTAGCTCCAATCCTCATTTTTATGCTCTTTTGAATTAGTTCTGCTCATATTAGGGCATCTTTTTAAGTTCTATTATAAGTTATATTATCATCGCTTCTTTTTATGAACCTTATGTTTGAAAATCGCCTAATAAAAGATGTTTATATCGAGTATTTATGTAATTTAGGATGAGTAGGAAATTGTTTTAGTCAAACAAAATATAAATAGAAAAAGCTGAAATCAGAGGCATGTGGGCGGGGAGGAACTAGTAAGGGCCCGCTGGGGTTCATGAGTGACTAGAAATCAACAAAAACTAGGATATGATTAATAATATATCTATGAGTAAAAGTGCCCTTGTATACTGATACAAACTAGAGGAACTACCTTACCTGCCAGACTAAGTTTTGGATTCAATTAAAGCCAAGACTAAGGTTTGGATTCAATGAAAGCCATACTGTACTCAAAATATATACTTTTTAGCTGAATATCATCTTCCCAATGAGTAATCCAAACACAAAATTTGCAATCATGATAAATCAGTGGAACATATAATAAGTCATCTTGCATAGTAATCCACATATCATAAGTCATGGTGTAGTAACCAAAAATCATTTCACAATCGTCATATCATAATAATTAATAGGGGCAACTAAAGAAAATCAATATTCAGTTGAAATTCTTGTTTAAAGTCGTTTGTAAAATTAGGTCTTAGGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGTCCAAGCCTTATAAGGAGTCCACCCATCTGATTAATCATCGATGTGGGACTTTTGTCATTATTTAACACCCCACCTCACGCCCAGTGCTTAGCATCTGGTGCGTGAACAATTTTAATTTTGGCGACCCCAACATCGGGTAAGACGGGCCCTGCTTTGATACCATGTGAAACTAGGTCTTCGGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCCAAGCCTTATAAGGAGTCCACCCATCTCATTAATCACCGATGTGAGACTTTTGTCATTATTTAACATCGTTAAGTCATGTTTTAAATCATTGGCCAATTCATTGAGAAAAATTTATGTTAAAATCACCACTTTAAAATTAAGTCTAATAGTCCCAATTGAGGAAAACAAAAATAGTTGAATAATATTCTTGTCCTAAAAGAAATAAAAATGATATTTTTAGATAATTTCTTATGAAAATTTATCCAGTTTAATTATTGTATAGATCGTACCAAATGCTACCAATTTGCCCAAAAGAATATATATATATGTGTATATACACACATCATTTTCAAATTTGTTGGGTTCATCTTTAGAATAAAAAAAATGTCAAAGCATGATTAACTACCTAACCTATTGTAGTAGTAGATGTGTGTCATTTCATGGGATATCTCAATTTTTACTCGCAAAAGTAAAAATGTAAATTAAACCTTTTTTCCTACTAATTACTTATTTTCAAAACATAAAGATTAGTATATTTTTAACAACACTTGTGGTACGATGGGACAGGAAAAAACAACAGTACAGGTAATCTAAGTGCAGATTTGAAGAATTATTTAAGCGGAGCATTAATTAATCAAGATACATGCATCGAAGGATTCGAGGGTACAAATGGACTAGTCAAGAATTTGGTTGCGGGTAATCTCAACCAAGTCTCATCATTAGTCCGCAACATTCTTCTTATGGTCCGACCCGTCTCTAGGAAAAACGTCTTCCCCTCTGAGGCCAATGCCAAACGTGGGAAGCCGTGGCAATTCTCCCGAGAAAGAAAATTAACGTCAAATGAAGAAGATCACAACTTATTCCCTTCGTGGATTAAACGAAAAGATAGAAGGTTATTGCAAGCATCAAATTCGACTAAAGGAGTAATTACAGACGTTGTAGTAGCTCTTGACGGAACT</genome_strand>
        <mrna_strand>TTTAATGATTATGGGTAATTTATTCTGTAAAGTACTGATTTTGGTACTTTTATGTCTAACTACTACTTGTCCTTTGATAAGCTATGCTGTTGATGACAATTTTTTTCAATCAGAATGTTTGCAAGTGCCAACATCTGAGTTTTTGGGTTCTGTTAAGTCTACCATCAACATTGTTCGTGAAGTCACTTCTTTAGTGTCAAAATTTGCTAGCTTTTTTGGCGATTTTCGACTTTCGAATGCCATTTCTGATTGTCTTGATCTCTTGGATCTCTCAGCAGATGAACTTACTTGGACTCTTACTGCTACTCAGAATCCCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAACAACAGTACAGGTAATCTAAGTGCAGATTTGAAGAATTATTTAAGCGGAGCATTAATTAATCAAGATACATGCATCGAAGGATTCGAGGGTACAAATGGACTAGTCAAGAATTTGGTTGCGGGTAATCTCAACCAAGTCTCATCATTAGTCCGCAACATTCTTCTTATGGTCCGACCCGTCTCTAGGAAAAACGTCTTCCCCTCTGAGGCCAATGCCAAACGTGGGAAGCCGTGGCAATTCTCCCGAGAAAG-AAATTAACGTCAAATGAAGAAGATCACAACTTATTCCCTTCGTGGATTAAACGAAAAGATAGAAGGTTATTGCAAGCATCAAATTCGACTAAAAGAGT-ATTACAGACGTTGTAGTAGCTCTTGACGGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325435" ref_strand="+" ref_description="SGN-E325435 [cTOC-1-F15]">
      <seq>tgggtaatttattctgtaaagtactgattttggtacttttatgtctaactactacttgtcctttgataagctatgctgttgatgacaatttttttcaatcagaatgtttgcaagtgccaacatctgagtttttgggttctgttaagtctaccatcaacattgttcgtgaagtcacttctttagtgtcaaaatttgctagcttttttggcgattttcgactttcgaatgccatttctgattgtcttgatctcttggatctctcagcagatgaacttacttggactcttactgctactcagaatcccaaaggaaaaaacaacagtacaggtaatctaagtgcagatttgaagaattatttaagcggagcattaattaatcaagatacatgcatcgaaggattcgagggtacaaatggactagtcaagaatttggttgcgggtaatctcaaccaagtctcatcattagtccgcaacattcttcttatggtccgacccgtctctaggaaaaacgtcttcccctctgaggccaatgccaaacgtgggaagccgtggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="104253" stop="107538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104553" g_stop="104861" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104862" i_stop="106994" i_length="2133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106995" g_stop="107238" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="553" r_length="244" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E325435" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104553" e_stop="104861"/>
          <exon e_start="106995" e_stop="107238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTAATTTATTCTGTAAAGTACTGATTTTGGTACTTTTATGTCTAACTACTACTTGTCCTTTGATAAGCTATGCTGTTGATGACAATTTTTTTCAATCAGAATGTTTGCAAGTGCCAACATCTGAGTTTTTGGGTTCTGTTAAGTCTACCATCAACATTGTTCGTGAAGTCACTTCTTTAGTGTCAAAATTTGCTAGCTTTTTTGGCGATTTTCGACTTTCGAATGCCATTTCTGATTGTCTTGATCTCTTGGATCTCTCAGCAGATGAACTTACTTGGACTCTTACTGCTACTCAGAATCCCAAAGGTATCTATTTATCTATCTATATTACTTGAGTATTAAGTATTTTTTCGTTCTTAATCAAAGATTTCATCCTTAATGTGAGACTTTTAATAGAAATATAAATTTAATAGACTTCAATATGAATATTAGATACGAGCATCTTTAATTTGTTCATTTTTTATGAGTGTTATGCACTTTAGGAAAAGGTTAATGCACTTAATTTTTTGTGCTCTTTTTGAGATGCTTGCTTTAAAACTTTAATTTGCAATTAGGTGTCTGTCTTTGTTACTTTTATCTTTTTGGCCTGTTTTACGCTTTATTGGAGTACTACAAGTTTACTACTCCTTCTATTCACGGTTACTTGTTAAATTTTGAATTGACATGTCTATTATAAAATAATAATATTATTTTATTTTTATTAATAAATAGAATTTCAGACTAATTTATTCATTGTGTTTTTTAAAAACATACTCAACGTTAATAAGTTGAGAATATAATAGAAAAAGATATTATTTTTCTCTTATTTGTAAAAATTACAACTGAAAAAGTGAAACTATAAAATATTTAACAAATAAATAAAAGACCGAGGGAGTACTACTTTTGACTGTTTTGAGTTGGGACTTGGAACCTCCCACGTATAAAAAGTTTTTAGCTCCAATCCTCATTTTTATGCTCTTTTGAATTAGTTCTGCTCATATTAGGGCATCTTTTTAAGTTCTATTATAAGTTATATTATCATCGCTTCTTTTTATGAACCTTATGTTTGAAAATCGCCTAATAAAAGATGTTTATATCGAGTATTTATGTAATTTAGGATGAGTAGGAAATTGTTTTAGTCAAACAAAATATAAATAGAAAAAGCTGAAATCAGAGGCATGTGGGCGGGGAGGAACTAGTAAGGGCCCGCTGGGGTTCATGAGTGACTAGAAATCAACAAAAACTAGGATATGATTAATAATATATCTATGAGTAAAAGTGCCCTTGTATACTGATACAAACTAGAGGAACTACCTTACCTGCCAGACTAAGTTTTGGATTCAATTAAAGCCAAGACTAAGGTTTGGATTCAATGAAAGCCATACTGTACTCAAAATATATACTTTTTAGCTGAATATCATCTTCCCAATGAGTAATCCAAACACAAAATTTGCAATCATGATAAATCAGTGGAACATATAATAAGTCATCTTGCATAGTAATCCACATATCATAAGTCATGGTGTAGTAACCAAAAATCATTTCACAATCGTCATATCATAATAATTAATAGGGGCAACTAAAGAAAATCAATATTCAGTTGAAATTCTTGTTTAAAGTCGTTTGTAAAATTAGGTCTTAGGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGTCCAAGCCTTATAAGGAGTCCACCCATCTGATTAATCATCGATGTGGGACTTTTGTCATTATTTAACACCCCACCTCACGCCCAGTGCTTAGCATCTGGTGCGTGAACAATTTTAATTTTGGCGACCCCAACATCGGGTAAGACGGGCCCTGCTTTGATACCATGTGAAACTAGGTCTTCGGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCCAAGCCTTATAAGGAGTCCACCCATCTCATTAATCACCGATGTGAGACTTTTGTCATTATTTAACATCGTTAAGTCATGTTTTAAATCATTGGCCAATTCATTGAGAAAAATTTATGTTAAAATCACCACTTTAAAATTAAGTCTAATAGTCCCAATTGAGGAAAACAAAAATAGTTGAATAATATTCTTGTCCTAAAAGAAATAAAAATGATATTTTTAGATAATTTCTTATGAAAATTTATCCAGTTTAATTATTGTATAGATCGTACCAAATGCTACCAATTTGCCCAAAAGAATATATATATATGTGTATATACACACATCATTTTCAAATTTGTTGGGTTCATCTTTAGAATAAAAAAAATGTCAAAGCATGATTAACTACCTAACCTATTGTAGTAGTAGATGTGTGTCATTTCATGGGATATCTCAATTTTTACTCGCAAAAGTAAAAATGTAAATTAAACCTTTTTTCCTACTAATTACTTATTTTCAAAACATAAAGATTAGTATATTTTTAACAACACTTGTGGTACGATGGGACAGGAAAAAACAACAGTACAGGTAATCTAAGTGCAGATTTGAAGAATTATTTAAGCGGAGCATTAATTAATCAAGATACATGCATCGAAGGATTCGAGGGTACAAATGGACTAGTCAAGAATTTGGTTGCGGGTAATCTCAACCAAGTCTCATCATTAGTCCGCAACATTCTTCTTATGGTCCGACCCGTCTCTAGGAAAAACGTCTTCCCCTCTGAGGCCAATGCCAAACGTGGGAAGCCGTGGCA</genome_strand>
        <mrna_strand>TGGGTAATTTATTCTGTAAAGTACTGATTTTGGTACTTTTATGTCTAACTACTACTTGTCCTTTGATAAGCTATGCTGTTGATGACAATTTTTTTCAATCAGAATGTTTGCAAGTGCCAACATCTGAGTTTTTGGGTTCTGTTAAGTCTACCATCAACATTGTTCGTGAAGTCACTTCTTTAGTGTCAAAATTTGCTAGCTTTTTTGGCGATTTTCGACTTTCGAATGCCATTTCTGATTGTCTTGATCTCTTGGATCTCTCAGCAGATGAACTTACTTGGACTCTTACTGCTACTCAGAATCCCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAACAACAGTACAGGTAATCTAAGTGCAGATTTGAAGAATTATTTAAGCGGAGCATTAATTAATCAAGATACATGCATCGAAGGATTCGAGGGTACAAATGGACTAGTCAAGAATTTGGTTGCGGGTAATCTCAACCAAGTCTCATCATTAGTCCGCAACATTCTTCTTATGGTCCGACCCGTCTCTAGGAAAAACGTCTTCCCCTCTGAGGCCAATGCCAAACGTGGGAAGCCGTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357157" ref_strand="+" ref_description="SGN-E357157 [cLHT-17-J11]">
      <seq>aatttttttcaatcataatgtttgcaagtgccaacatctgagtttttgggttctgttaagtctaccatcaacattgttcgtgaagtcacttctttagtgtcaaaatttgctagcttttttggcgattttcgactttcgaatgccatttctgattgtcttgatctcttggatctctcagcagatgaacttacttggactcttactgctactcagaatcccaaagggaaaaacaacagtacaggtaatctaagtgcagatttgaagaattatttaagtggagcattaattaatcaagatacatgcatcgaaggattcgagggcacaaatggactagtcaagaatttggttgcgagtaatctcaaccaagtctcatcattagtccgcaacattcttcttatggtccgccccgtctctaggaaaaatgtctttccctcggaggccaatgccaaacgtgggaagccgtggcaattctcccgagaaagaaaattaacgtcaaatgaagaagacaacaactcatttccttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="104339" stop="107596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104639" g_stop="104861" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104862" i_stop="106994" i_length="2133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106995" g_stop="107296" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="525" r_length="302" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E357157" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104639" e_stop="104861"/>
          <exon e_start="106995" e_stop="107296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTTTCAATCAGAATGTTTGCAAGTGCCAACATCTGAGTTTTTGGGTTCTGTTAAGTCTACCATCAACATTGTTCGTGAAGTCACTTCTTTAGTGTCAAAATTTGCTAGCTTTTTTGGCGATTTTCGACTTTCGAATGCCATTTCTGATTGTCTTGATCTCTTGGATCTCTCAGCAGATGAACTTACTTGGACTCTTACTGCTACTCAGAATCCCAAAGGTATCTATTTATCTATCTATATTACTTGAGTATTAAGTATTTTTTCGTTCTTAATCAAAGATTTCATCCTTAATGTGAGACTTTTAATAGAAATATAAATTTAATAGACTTCAATATGAATATTAGATACGAGCATCTTTAATTTGTTCATTTTTTATGAGTGTTATGCACTTTAGGAAAAGGTTAATGCACTTAATTTTTTGTGCTCTTTTTGAGATGCTTGCTTTAAAACTTTAATTTGCAATTAGGTGTCTGTCTTTGTTACTTTTATCTTTTTGGCCTGTTTTACGCTTTATTGGAGTACTACAAGTTTACTACTCCTTCTATTCACGGTTACTTGTTAAATTTTGAATTGACATGTCTATTATAAAATAATAATATTATTTTATTTTTATTAATAAATAGAATTTCAGACTAATTTATTCATTGTGTTTTTTAAAAACATACTCAACGTTAATAAGTTGAGAATATAATAGAAAAAGATATTATTTTTCTCTTATTTGTAAAAATTACAACTGAAAAAGTGAAACTATAAAATATTTAACAAATAAATAAAAGACCGAGGGAGTACTACTTTTGACTGTTTTGAGTTGGGACTTGGAACCTCCCACGTATAAAAAGTTTTTAGCTCCAATCCTCATTTTTATGCTCTTTTGAATTAGTTCTGCTCATATTAGGGCATCTTTTTAAGTTCTATTATAAGTTATATTATCATCGCTTCTTTTTATGAACCTTATGTTTGAAAATCGCCTAATAAAAGATGTTTATATCGAGTATTTATGTAATTTAGGATGAGTAGGAAATTGTTTTAGTCAAACAAAATATAAATAGAAAAAGCTGAAATCAGAGGCATGTGGGCGGGGAGGAACTAGTAAGGGCCCGCTGGGGTTCATGAGTGACTAGAAATCAACAAAAACTAGGATATGATTAATAATATATCTATGAGTAAAAGTGCCCTTGTATACTGATACAAACTAGAGGAACTACCTTACCTGCCAGACTAAGTTTTGGATTCAATTAAAGCCAAGACTAAGGTTTGGATTCAATGAAAGCCATACTGTACTCAAAATATATACTTTTTAGCTGAATATCATCTTCCCAATGAGTAATCCAAACACAAAATTTGCAATCATGATAAATCAGTGGAACATATAATAAGTCATCTTGCATAGTAATCCACATATCATAAGTCATGGTGTAGTAACCAAAAATCATTTCACAATCGTCATATCATAATAATTAATAGGGGCAACTAAAGAAAATCAATATTCAGTTGAAATTCTTGTTTAAAGTCGTTTGTAAAATTAGGTCTTAGGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGTCCAAGCCTTATAAGGAGTCCACCCATCTGATTAATCATCGATGTGGGACTTTTGTCATTATTTAACACCCCACCTCACGCCCAGTGCTTAGCATCTGGTGCGTGAACAATTTTAATTTTGGCGACCCCAACATCGGGTAAGACGGGCCCTGCTTTGATACCATGTGAAACTAGGTCTTCGGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCCAAGCCTTATAAGGAGTCCACCCATCTCATTAATCACCGATGTGAGACTTTTGTCATTATTTAACATCGTTAAGTCATGTTTTAAATCATTGGCCAATTCATTGAGAAAAATTTATGTTAAAATCACCACTTTAAAATTAAGTCTAATAGTCCCAATTGAGGAAAACAAAAATAGTTGAATAATATTCTTGTCCTAAAAGAAATAAAAATGATATTTTTAGATAATTTCTTATGAAAATTTATCCAGTTTAATTATTGTATAGATCGTACCAAATGCTACCAATTTGCCCAAAAGAATATATATATATGTGTATATACACACATCATTTTCAAATTTGTTGGGTTCATCTTTAGAATAAAAAAAATGTCAAAGCATGATTAACTACCTAACCTATTGTAGTAGTAGATGTGTGTCATTTCATGGGATATCTCAATTTTTACTCGCAAAAGTAAAAATGTAAATTAAACCTTTTTTCCTACTAATTACTTATTTTCAAAACATAAAGATTAGTATATTTTTAACAACACTTGTGGTACGATGGGACAGGAAAAAACAACAGTACAGGTAATCTAAGTGCAGATTTGAAGAATTATTTAAGCGGAGCATTAATTAATCAAGATACATGCATCGAAGGATTCGAGGGTACAAATGGACTAGTCAAGAATTTGGTTGCGGGTAATCTCAACCAAGTCTCATCATTAGTCCGCAACATTCTTCTTATGGTCCGACCCGTCTCTAGGAAAAACGTCTTCCCCTCTGAGGCCAATGCCAAACGTGGGAAGCCGTGGCAATTCTCCCGAGAAAGAAAATTAACGTCAAATGAAGAAGATCACAACTTATTCCCTTCG</genome_strand>
        <mrna_strand>AATTTTTTTCAATCATAATGTTTGCAAGTGCCAACATCTGAGTTTTTGGGTTCTGTTAAGTCTACCATCAACATTGTTCGTGAAGTCACTTCTTTAGTGTCAAAATTTGCTAGCTTTTTTGGCGATTTTCGACTTTCGAATGCCATTTCTGATTGTCTTGATCTCTTGGATCTCTCAGCAGATGAACTTACTTGGACTCTTACTGCTACTCAGAATCCCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAACAACAGTACAGGTAATCTAAGTGCAGATTTGAAGAATTATTTAAGTGGAGCATTAATTAATCAAGATACATGCATCGAAGGATTCGAGGGCACAAATGGACTAGTCAAGAATTTGGTTGCGAGTAATCTCAACCAAGTCTCATCATTAGTCCGCAACATTCTTCTTATGGTCCGCCCCGTCTCTAGGAAAAATGTCTTTCCCTCGGAGGCCAATGCCAAACGTGGGAAGCCGTGGCAATTCTCCCGAGAAAGAAAATTAACGTCAAATGAAGAAGACAACAACTCATTTCCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357148" ref_strand="+" ref_description="SGN-E357148 [cLHT-17-B19]">
      <seq>aatttttttcaatcagaatgtttgcaagtgccaacatctgagtttttgggttctgttaagtctaccatcaacattgttcgtgaagtcacttctttagtgtcaaaatttgctagcttttttggcgattttcgactttcgaatgccatttctgattgtcttgatctcttggatctctcagcagatgaacttacttggactcttactgctactcagaatcccaaagggaaaaacaacagtacaggtaatctaagtgcagatttgaagaattatttaagtggagcattaattaatcaagatacatgcatcgaaggattcgagggcacaaatggactattcaagaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="104339" stop="107414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104639" g_stop="104861" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104862" i_stop="106994" i_length="2133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106995" g_stop="107114" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="343" r_length="120" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E357148" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104639" e_stop="104861"/>
          <exon e_start="106995" e_stop="107114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTTTCAATCAGAATGTTTGCAAGTGCCAACATCTGAGTTTTTGGGTTCTGTTAAGTCTACCATCAACATTGTTCGTGAAGTCACTTCTTTAGTGTCAAAATTTGCTAGCTTTTTTGGCGATTTTCGACTTTCGAATGCCATTTCTGATTGTCTTGATCTCTTGGATCTCTCAGCAGATGAACTTACTTGGACTCTTACTGCTACTCAGAATCCCAAAGGTATCTATTTATCTATCTATATTACTTGAGTATTAAGTATTTTTTCGTTCTTAATCAAAGATTTCATCCTTAATGTGAGACTTTTAATAGAAATATAAATTTAATAGACTTCAATATGAATATTAGATACGAGCATCTTTAATTTGTTCATTTTTTATGAGTGTTATGCACTTTAGGAAAAGGTTAATGCACTTAATTTTTTGTGCTCTTTTTGAGATGCTTGCTTTAAAACTTTAATTTGCAATTAGGTGTCTGTCTTTGTTACTTTTATCTTTTTGGCCTGTTTTACGCTTTATTGGAGTACTACAAGTTTACTACTCCTTCTATTCACGGTTACTTGTTAAATTTTGAATTGACATGTCTATTATAAAATAATAATATTATTTTATTTTTATTAATAAATAGAATTTCAGACTAATTTATTCATTGTGTTTTTTAAAAACATACTCAACGTTAATAAGTTGAGAATATAATAGAAAAAGATATTATTTTTCTCTTATTTGTAAAAATTACAACTGAAAAAGTGAAACTATAAAATATTTAACAAATAAATAAAAGACCGAGGGAGTACTACTTTTGACTGTTTTGAGTTGGGACTTGGAACCTCCCACGTATAAAAAGTTTTTAGCTCCAATCCTCATTTTTATGCTCTTTTGAATTAGTTCTGCTCATATTAGGGCATCTTTTTAAGTTCTATTATAAGTTATATTATCATCGCTTCTTTTTATGAACCTTATGTTTGAAAATCGCCTAATAAAAGATGTTTATATCGAGTATTTATGTAATTTAGGATGAGTAGGAAATTGTTTTAGTCAAACAAAATATAAATAGAAAAAGCTGAAATCAGAGGCATGTGGGCGGGGAGGAACTAGTAAGGGCCCGCTGGGGTTCATGAGTGACTAGAAATCAACAAAAACTAGGATATGATTAATAATATATCTATGAGTAAAAGTGCCCTTGTATACTGATACAAACTAGAGGAACTACCTTACCTGCCAGACTAAGTTTTGGATTCAATTAAAGCCAAGACTAAGGTTTGGATTCAATGAAAGCCATACTGTACTCAAAATATATACTTTTTAGCTGAATATCATCTTCCCAATGAGTAATCCAAACACAAAATTTGCAATCATGATAAATCAGTGGAACATATAATAAGTCATCTTGCATAGTAATCCACATATCATAAGTCATGGTGTAGTAACCAAAAATCATTTCACAATCGTCATATCATAATAATTAATAGGGGCAACTAAAGAAAATCAATATTCAGTTGAAATTCTTGTTTAAAGTCGTTTGTAAAATTAGGTCTTAGGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGTCCAAGCCTTATAAGGAGTCCACCCATCTGATTAATCATCGATGTGGGACTTTTGTCATTATTTAACACCCCACCTCACGCCCAGTGCTTAGCATCTGGTGCGTGAACAATTTTAATTTTGGCGACCCCAACATCGGGTAAGACGGGCCCTGCTTTGATACCATGTGAAACTAGGTCTTCGGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCCAAGCCTTATAAGGAGTCCACCCATCTCATTAATCACCGATGTGAGACTTTTGTCATTATTTAACATCGTTAAGTCATGTTTTAAATCATTGGCCAATTCATTGAGAAAAATTTATGTTAAAATCACCACTTTAAAATTAAGTCTAATAGTCCCAATTGAGGAAAACAAAAATAGTTGAATAATATTCTTGTCCTAAAAGAAATAAAAATGATATTTTTAGATAATTTCTTATGAAAATTTATCCAGTTTAATTATTGTATAGATCGTACCAAATGCTACCAATTTGCCCAAAAGAATATATATATATGTGTATATACACACATCATTTTCAAATTTGTTGGGTTCATCTTTAGAATAAAAAAAATGTCAAAGCATGATTAACTACCTAACCTATTGTAGTAGTAGATGTGTGTCATTTCATGGGATATCTCAATTTTTACTCGCAAAAGTAAAAATGTAAATTAAACCTTTTTTCCTACTAATTACTTATTTTCAAAACATAAAGATTAGTATATTTTTAACAACACTTGTGGTACGATGGGACAGGAAAAAACAACAGTACAGGTAATCTAAGTGCAGATTTGAAGAATTATTTAAGCGGAGCATTAATTAATCAAGATACATGCATCGAAGGATTCGAGGGTACAAATGGACTAGTCAAGAATT</genome_strand>
        <mrna_strand>AATTTTTTTCAATCAGAATGTTTGCAAGTGCCAACATCTGAGTTTTTGGGTTCTGTTAAGTCTACCATCAACATTGTTCGTGAAGTCACTTCTTTAGTGTCAAAATTTGCTAGCTTTTTTGGCGATTTTCGACTTTCGAATGCCATTTCTGATTGTCTTGATCTCTTGGATCTCTCAGCAGATGAACTTACTTGGACTCTTACTGCTACTCAGAATCCCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAACAACAGTACAGGTAATCTAAGTGCAGATTTGAAGAATTATTTAAGTGGAGCATTAATTAATCAAGATACATGCATCGAAGGATTCGAGGGCACAAATGGACTATTCAAGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374523" ref_strand="+" ref_description="SGN-E374523 [TUS-38-L4]">
      <seq>taatctcaaccaagtctcatcattagtccgcaacattcttcttatggtccgacccgtctctaggaaaaacgtcttcccctctgaggccaatgccaaacgtgggaagccgtggcaattctcccgagaaagaaaattaacgtcaaatgaagaagatcacaacttattcccttcgtggattaaacgaaaagatagaaggttattgcaagcatcaaattcgactaaaggagtaattacagacgttgtagtagctcttgacggaactggtaattttacccgaattaaagatgcaatagacgcagcaccacaattgagtacaaaaagatttgtgatatatattaagaagggaatttataaagagtatgtggagattagcaagaaaaaatggaatattatgatgattggtgatggaattgatgttactattatttctgggaatagaaattttattgatggatggaccacttatagatctgcaacctttgcggtaaaaggtcaaggatttatagcccgagacataacatttgagaacacatcaggacccgaaaagcaccaagcagtagcatttcgttccgactcagatttatcggtcttgttccgatgcgcggtgaggggttaccaagacactctctacgcccactcaatgcgtcaattctacagagactgtacaattactggcacagtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="106825" stop="109085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107125" g_stop="107606" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107607" i_stop="108584" i_length="978">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108585" g_stop="108785" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="683" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E374523" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107125" e_stop="107606"/>
          <exon e_start="108585" e_stop="108785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTCAACCAAGTCTCATCATTAGTCCGCAACATTCTTCTTATGGTCCGACCCGTCTCTAGGAAAAACGTCTTCCCCTCTGAGGCCAATGCCAAACGTGGGAAGCCGTGGCAATTCTCCCGAGAAAGAAAATTAACGTCAAATGAAGAAGATCACAACTTATTCCCTTCGTGGATTAAACGAAAAGATAGAAGGTTATTGCAAGCATCAAATTCGACTAAAGGAGTAATTACAGACGTTGTAGTAGCTCTTGACGGAACTGGTAATTTTACCCGAATTAAAGATGCAATAGACGCAGCACCACAATTGAGTACAAAAAGATTTGTGATATATATTAAGAAGGGAATTTATAAAGAGTATGTGGAGATTAGCAAGAAAAAATGGAATATTATGATGATTGGTGATGGAATTGATGTTACTATTATTTCTGGGAATAGAAATTTTATTGATGGATGGACCACTTATAGATCTGCAACCTTTGGTAAGTTTTCATTTTCATTTATTGTCATATTATTATTATTATCATAATTCACGTGGAGTTATGTACTCAATATTTCAAAAATCCCCCCACTTTTATTTAATATTTGATAGGACGCATGATAATAATAATATTTATAAAAATATCACTGTTTATTCTGCTTTTTTAAACATGGCCCATAAAGGTATGTCTGCAAATTTGTTACTTTTTCAATTTTAAAAAATAAATAATGTAATATATTATAATAAATTCTTTATTTAAACTTTTTAATATCATACATTTAATATCATAAAATTGATGACTATTTTGTTATATTTTAAATATTTTTAATAATTAAAATTAATTATTTTTACTATACATTTAGTCAAAATAAAAGCTTGAGTTGATGTTACAACTAAAAAAACGAAATTATTCATCTGAAATTTTTAAAGTTGGTCTTGTTCTTGTGTTTGATCATAACTTTTAAAAATAATATTTAGAATTTAAATTATTATTTAAAATATATAAATATTACTTAAACTTGAAATATAATTTAAATAAGGGTATATTATGATTTTTTTAGGATTTATTAAAAACAAAATAAATCTAAAAAAAAAAAAAAGTGAAGACAGGGGTTTTGGTTGTATCAGAATTTGGTGAAATAATTTTTAGTCAAAAAAAGAAAGAAAGATAAAAATAACATAAACTAATTCATAAATTTAATCTTTACATTGTTATTATATATCTAACTCTTACCCACTATTATTACTATAATAAGACAAATGCAAATTTCAAAAATGATTTTATTCATCCAAAGTTACGTACCTAATTAAAATGTCGGTGTTCCTTTTTATCATATGCATATATGTCCTTTTTTTAAGTCAACGAGTTTGAGTTTGGATTTTTTTAAGTAAAAATTATAATACAAAAATTGTTAAATAACAAAATATATTTACTATGTCTTTAGTCAAATTTTTGATTCCGTTACTGAACGCAATGCAGCGGTAAAAGGTCAAGGATTTATAGCCCGAGACATAACATTTGAGAACACATCAGGACCCGAAAAGCACCAAGCAGTAGCATTTCGTTCCGACTCAGATTTATCGGTCTTGTTCCGATGCGCGGTGAGGGGTTACCAAGACACTCTCTACGCCCACTCAATGCGTCAATTCTACAGAGACTGTACAATTACTGGCACAGTCG</genome_strand>
        <mrna_strand>TAATCTCAACCAAGTCTCATCATTAGTCCGCAACATTCTTCTTATGGTCCGACCCGTCTCTAGGAAAAACGTCTTCCCCTCTGAGGCCAATGCCAAACGTGGGAAGCCGTGGCAATTCTCCCGAGAAAGAAAATTAACGTCAAATGAAGAAGATCACAACTTATTCCCTTCGTGGATTAAACGAAAAGATAGAAGGTTATTGCAAGCATCAAATTCGACTAAAGGAGTAATTACAGACGTTGTAGTAGCTCTTGACGGAACTGGTAATTTTACCCGAATTAAAGATGCAATAGACGCAGCACCACAATTGAGTACAAAAAGATTTGTGATATATATTAAGAAGGGAATTTATAAAGAGTATGTGGAGATTAGCAAGAAAAAATGGAATATTATGATGATTGGTGATGGAATTGATGTTACTATTATTTCTGGGAATAGAAATTTTATTGATGGATGGACCACTTATAGATCTGCAACCTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTAAAAGGTCAAGGATTTATAGCCCGAGACATAACATTTGAGAACACATCAGGACCCGAAAAGCACCAAGCAGTAGCATTTCGTTCCGACTCAGATTTATCGGTCTTGTTCCGATGCGCGGTGAGGGGTTACCAAGACACTCTCTACGCCCACTCAATGCGTCAATTCTACAGAGACTGTACAATTACTGGCACAGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297478" ref_strand="+" ref_description="SGN-E297478 [cLET-28-G11]">
      <seq>ggaaaaacgtcttcccctctgaggccaatgccaaacgtggtaagccggggcaattctcccgagaaagaaaatttacgtcaaatgaagaagatcacaacttatttccttctaggattaaacgaaaagatagaaggttattgcaagcatcaaattcgactaaaggagtaattacagacgttgtattatctcttgacggaactggtaattgtacccgaattaaagatgcaatagacgcagcaccacaattgagtacaaaaagatttgtgatatatattaagaagggaatttataaagagtatgtggagattaacaggaaaaaatggaatattatgatgattggtgatggaattgatgttactattatttctgggaatagaaattttattgatggatggaccacttatagatctgcaacctttgccgtaaaaggtcaaggatttatagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="106887" stop="108910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107187" g_stop="107606" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107607" i_stop="108584" i_length="978">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108585" g_stop="108610" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="446" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E297478" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107187" e_stop="107606"/>
          <exon e_start="108585" e_stop="108610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAACGTCTTCCCCTCTGAGGCCAATGCCAAACGTGGGAAGCCGTGGCAATTCTCCCGAGAAAGAAAATTAACGTCAAATGAAGAAGATCACAACTTATTCCCTTCGTGGATTAAACGAAAAGATAGAAGGTTATTGCAAGCATCAAATTCGACTAAAGGAGTAATTACAGACGTTGTAGTAGCTCTTGACGGAACTGGTAATTTTACCCGAATTAAAGATGCAATAGACGCAGCACCACAATTGAGTACAAAAAGATTTGTGATATATATTAAGAAGGGAATTTATAAAGAGTATGTGGAGATTAGCAAGAAAAAATGGAATATTATGATGATTGGTGATGGAATTGATGTTACTATTATTTCTGGGAATAGAAATTTTATTGATGGATGGACCACTTATAGATCTGCAACCTTTGGTAAGTTTTCATTTTCATTTATTGTCATATTATTATTATTATCATAATTCACGTGGAGTTATGTACTCAATATTTCAAAAATCCCCCCACTTTTATTTAATATTTGATAGGACGCATGATAATAATAATATTTATAAAAATATCACTGTTTATTCTGCTTTTTTAAACATGGCCCATAAAGGTATGTCTGCAAATTTGTTACTTTTTCAATTTTAAAAAATAAATAATGTAATATATTATAATAAATTCTTTATTTAAACTTTTTAATATCATACATTTAATATCATAAAATTGATGACTATTTTGTTATATTTTAAATATTTTTAATAATTAAAATTAATTATTTTTACTATACATTTAGTCAAAATAAAAGCTTGAGTTGATGTTACAACTAAAAAAACGAAATTATTCATCTGAAATTTTTAAAGTTGGTCTTGTTCTTGTGTTTGATCATAACTTTTAAAAATAATATTTAGAATTTAAATTATTATTTAAAATATATAAATATTACTTAAACTTGAAATATAATTTAAATAAGGGTATATTATGATTTTTTTAGGATTTATTAAAAACAAAATAAATCTAAAAAAAAAAAAAAGTGAAGACAGGGGTTTTGGTTGTATCAGAATTTGGTGAAATAATTTTTAGTCAAAAAAAGAAAGAAAGATAAAAATAACATAAACTAATTCATAAATTTAATCTTTACATTGTTATTATATATCTAACTCTTACCCACTATTATTACTATAATAAGACAAATGCAAATTTCAAAAATGATTTTATTCATCCAAAGTTACGTACCTAATTAAAATGTCGGTGTTCCTTTTTATCATATGCATATATGTCCTTTTTTTAAGTCAACGAGTTTGAGTTTGGATTTTTTTAAGTAAAAATTATAATACAAAAATTGTTAAATAACAAAATATATTTACTATGTCTTTAGTCAAATTTTTGATTCCGTTACTGAACGCAATGCAGCGGTAAAAGGTCAAGGATTTATAGCC</genome_strand>
        <mrna_strand>GGAAAAACGTCTTCCCCTCTGAGGCCAATGCCAAACGTGGTAAGCCGGGGCAATTCTCCCGAGAAAGAAAATTTACGTCAAATGAAGAAGATCACAACTTATTTCCTTCTAGGATTAAACGAAAAGATAGAAGGTTATTGCAAGCATCAAATTCGACTAAAGGAGTAATTACAGACGTTGTATTATCTCTTGACGGAACTGGTAATTGTACCCGAATTAAAGATGCAATAGACGCAGCACCACAATTGAGTACAAAAAGATTTGTGATATATATTAAGAAGGGAATTTATAAAGAGTATGTGGAGATTAACAGGAAAAAATGGAATATTATGATGATTGGTGATGGAATTGATGTTACTATTATTTCTGGGAATAGAAATTTTATTGATGGATGGACCACTTATAGATCTGCAACCTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTAAAAGGTCAAGGATTTATAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290478" ref_strand="+" ref_description="SGN-E290478 [cLES-20-P2]">
      <seq>aatggaatattatgatgattggtgatggaattgatgttactattatttctgggaatagaaattttattgatggatggaccacttatagatctgcaacctttgcggtaaaaggtcaaggatttatagcccgagacataacatttgagaacacatcaggacccgaaaagcaccaagcagtagcatttcgttccgactcagatttatcggtcttgttccgatgcgcggtgaggggttaccaagacactctctacgcccactcaatgcgtcaattctacagagactgtacaattactggcacagtcgatttcatttttggagacggtacagctatttttcaaaactgtcaaatattagcacgaaaaggattgtcacaacagaaaaacacaatcacagcacaaggtcgaaaagaaattgctgaaacaacaggtttcacgattcaattttgtaacatatctggtgaaccggatctattaacttcactcaattctacgtatacgtatcttggaagaccatggaagacgtattcgcgaacagtgatcatgcaatcgtacatgagtaatgtaattagacctcaaggttggttagaatggaacggaaatacatcacttgacacattgtattacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="107205" stop="109407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107505" g_stop="107606" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107607" i_stop="108584" i_length="978">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108585" g_stop="109107" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="625" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E290478" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107505" e_stop="107606"/>
          <exon e_start="108585" e_stop="109107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAATATTATGATGATTGGTGATGGAATTGATGTTACTATTATTTCTGGGAATAGAAATTTTATTGATGGATGGACCACTTATAGATCTGCAACCTTTGGTAAGTTTTCATTTTCATTTATTGTCATATTATTATTATTATCATAATTCACGTGGAGTTATGTACTCAATATTTCAAAAATCCCCCCACTTTTATTTAATATTTGATAGGACGCATGATAATAATAATATTTATAAAAATATCACTGTTTATTCTGCTTTTTTAAACATGGCCCATAAAGGTATGTCTGCAAATTTGTTACTTTTTCAATTTTAAAAAATAAATAATGTAATATATTATAATAAATTCTTTATTTAAACTTTTTAATATCATACATTTAATATCATAAAATTGATGACTATTTTGTTATATTTTAAATATTTTTAATAATTAAAATTAATTATTTTTACTATACATTTAGTCAAAATAAAAGCTTGAGTTGATGTTACAACTAAAAAAACGAAATTATTCATCTGAAATTTTTAAAGTTGGTCTTGTTCTTGTGTTTGATCATAACTTTTAAAAATAATATTTAGAATTTAAATTATTATTTAAAATATATAAATATTACTTAAACTTGAAATATAATTTAAATAAGGGTATATTATGATTTTTTTAGGATTTATTAAAAACAAAATAAATCTAAAAAAAAAAAAAAGTGAAGACAGGGGTTTTGGTTGTATCAGAATTTGGTGAAATAATTTTTAGTCAAAAAAAGAAAGAAAGATAAAAATAACATAAACTAATTCATAAATTTAATCTTTACATTGTTATTATATATCTAACTCTTACCCACTATTATTACTATAATAAGACAAATGCAAATTTCAAAAATGATTTTATTCATCCAAAGTTACGTACCTAATTAAAATGTCGGTGTTCCTTTTTATCATATGCATATATGTCCTTTTTTTAAGTCAACGAGTTTGAGTTTGGATTTTTTTAAGTAAAAATTATAATACAAAAATTGTTAAATAACAAAATATATTTACTATGTCTTTAGTCAAATTTTTGATTCCGTTACTGAACGCAATGCAGCGGTAAAAGGTCAAGGATTTATAGCCCGAGACATAACATTTGAGAACACATCAGGACCCGAAAAGCACCAAGCAGTAGCATTTCGTTCCGACTCAGATTTATCGGTCTTGTTCCGATGCGCGGTGAGGGGTTACCAAGACACTCTCTACGCCCACTCAATGCGTCAATTCTACAGAGACTGTACAATTACTGGCACAGTCGATTTCATTTTTGGAGACGGTACAGCTATTTTTCAAAACTGTCAAATATTAGCACGAAAAGGATTGTCACAACAGAAAAACACAATCACAGCACAAGGTCGAAAAGAAATTGCTGAAACAACAGGTTTCACGATTCAATTTTGTAACATATCTGGTGAACCGGATCTATTAACTTCACTCAATTCTACGTATACGTATCTTGGAAGACCATGGAAGACGTATTCGCGAACAGTGATCATGCAATCGTACATGAGTAATGTAATTAGACCTCAAGGTTGGTTAGAATGGAACGGAAATACATCACTTGACACATTGTATTACGC</genome_strand>
        <mrna_strand>AATGGAATATTATGATGATTGGTGATGGAATTGATGTTACTATTATTTCTGGGAATAGAAATTTTATTGATGGATGGACCACTTATAGATCTGCAACCTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTAAAAGGTCAAGGATTTATAGCCCGAGACATAACATTTGAGAACACATCAGGACCCGAAAAGCACCAAGCAGTAGCATTTCGTTCCGACTCAGATTTATCGGTCTTGTTCCGATGCGCGGTGAGGGGTTACCAAGACACTCTCTACGCCCACTCAATGCGTCAATTCTACAGAGACTGTACAATTACTGGCACAGTCGATTTCATTTTTGGAGACGGTACAGCTATTTTTCAAAACTGTCAAATATTAGCACGAAAAGGATTGTCACAACAGAAAAACACAATCACAGCACAAGGTCGAAAAGAAATTGCTGAAACAACAGGTTTCACGATTCAATTTTGTAACATATCTGGTGAACCGGATCTATTAACTTCACTCAATTCTACGTATACGTATCTTGGAAGACCATGGAAGACGTATTCGCGAACAGTGATCATGCAATCGTACATGAGTAATGTAATTAGACCTCAAGGTTGGTTAGAATGGAACGGAAATACATCACTTGACACATTGTATTACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702633" ref_strand="+" ref_description="SGN-E702633 [FA19BA11]">
      <seq>gattggtgatggaattgatgttactattatttctgggaatagaaattttattgatggatggaccacttatagatctgcaacctttgcggtaaaaggtcaaggatttatagcccgagacataacatttgagaacacatcaggacccgaaaagcaccaagcagtagcatttcgttccgactcagatttatcggtcttgttccgatgcgcggtgaggggttaccaagacactctctacgcccactcaatgcgtcaattctacagagactgtacaattactggcacagtcgatttcatttttggagacggtacagctatttttcaaaactgtcaaatattagcacgaaaaggattgtcacaacagaaaaacacaatcacagcacaaggtcgaaaagaaattgctgaaacaacaggtttcacgattcaattttgtaacatatctggtgaaccggatctattaacttcactcaattctacgtatacgtatcttggaagaccatggaagacgtattcgcgaacagtgatcatgcaatcgtacatgagtaatgtaattagacctcaaggttggttagaatggaacggaaatacatcacttgacacattgtattacgcagagtaccaaaattatgggcctggcgccggtttgggcggtagagttaattggcctggttttcatctgctcaatgattcatcacaggctagtaattttaccgttgctcagttccttttggggaactcatggttacctcctacgggagttaagtataccgctggtctagcagtttaaagttactgatatctatggacatgtaacatcatttttttttcttggatgcattgggcgatttttctttctatttctatcgnttttactggtacgtctatatagatcaagtataaaatacccgtttaatgcgtgattaataaaatattcggacactctggatgaactatgtattatgagacttaataacttttggaatttgggcagagttttcatctgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="107221" stop="109809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107521" g_stop="107606" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107607" i_stop="108584" i_length="978">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108585" g_stop="109510" g_length="926"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="1011" r_length="925" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E702633" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>1012</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107521" e_stop="107606"/>
          <exon e_start="108585" e_stop="109510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGGTGATGGAATTGATGTTACTATTATTTCTGGGAATAGAAATTTTATTGATGGATGGACCACTTATAGATCTGCAACCTTTGGTAAGTTTTCATTTTCATTTATTGTCATATTATTATTATTATCATAATTCACGTGGAGTTATGTACTCAATATTTCAAAAATCCCCCCACTTTTATTTAATATTTGATAGGACGCATGATAATAATAATATTTATAAAAATATCACTGTTTATTCTGCTTTTTTAAACATGGCCCATAAAGGTATGTCTGCAAATTTGTTACTTTTTCAATTTTAAAAAATAAATAATGTAATATATTATAATAAATTCTTTATTTAAACTTTTTAATATCATACATTTAATATCATAAAATTGATGACTATTTTGTTATATTTTAAATATTTTTAATAATTAAAATTAATTATTTTTACTATACATTTAGTCAAAATAAAAGCTTGAGTTGATGTTACAACTAAAAAAACGAAATTATTCATCTGAAATTTTTAAAGTTGGTCTTGTTCTTGTGTTTGATCATAACTTTTAAAAATAATATTTAGAATTTAAATTATTATTTAAAATATATAAATATTACTTAAACTTGAAATATAATTTAAATAAGGGTATATTATGATTTTTTTAGGATTTATTAAAAACAAAATAAATCTAAAAAAAAAAAAAAGTGAAGACAGGGGTTTTGGTTGTATCAGAATTTGGTGAAATAATTTTTAGTCAAAAAAAGAAAGAAAGATAAAAATAACATAAACTAATTCATAAATTTAATCTTTACATTGTTATTATATATCTAACTCTTACCCACTATTATTACTATAATAAGACAAATGCAAATTTCAAAAATGATTTTATTCATCCAAAGTTACGTACCTAATTAAAATGTCGGTGTTCCTTTTTATCATATGCATATATGTCCTTTTTTTAAGTCAACGAGTTTGAGTTTGGATTTTTTTAAGTAAAAATTATAATACAAAAATTGTTAAATAACAAAATATATTTACTATGTCTTTAGTCAAATTTTTGATTCCGTTACTGAACGCAATGCAGCGGTAAAAGGTCAAGGATTTATAGCCCGAGACATAACATTTGAGAACACATCAGGACCCGAAAAGCACCAAGCAGTAGCATTTCGTTCCGACTCAGATTTATCGGTCTTGTTCCGATGCGCGGTGAGGGGTTACCAAGACACTCTCTACGCCCACTCAATGCGTCAATTCTACAGAGACTGTACAATTACTGGCACAGTCGATTTCATTTTTGGAGACGGTACAGCTATTTTTCAAAACTGTCAAATATTAGCACGAAAAGGATTGTCACAACAGAAAAACACAATCACAGCACAAGGTCGAAAAGAAATTGCTGAAACAACAGGTTTCACGATTCAATTTTGTAACATATCTGGTGAACCGGATCTATTAACTTCACTCAATTCTACGTATACGTATCTTGGAAGACCATGGAAGACGTATTCGCGAACAGTGATCATGCAATCGTACATGAGTAATGTAATTAGACCTCAAGGTTGGTTAGAATGGAACGGAAATACATCACTTGACACATTGTATTACGCAGAGTACCAAAATTATGGGCCTGGCGCCGGTTTGGGCGGTAGAGTTAATTGGCCTGGTTTTCATCTGCTCAATGATTCATCACAGGCTAGTAATTTTACCGTTGCTCAGTTCCTTTTGGGGAACTCATGGTTACCTCCTACGGGAGTTAAGTATACCGCTGGTCTAGCAGTTTAAAGTTACTGATATCTATGGACATGTAACATCATTTTTTTTTCTTGGATGCATTGGGCGATTTTTCTTTCTATTTCTATCGTTTTTACTGGTACGTCTATATAGATCAAGTATAAAATACACGTTTAATGCGTGATTAATTAAGATATTCGGACACTCTGGATGAACTATGTATTATGAGACTTAATAACTTTTGAATTTTGTGCAGAGTTTTCATCTGAAATGATTAAT</genome_strand>
        <mrna_strand>GATTGGTGATGGAATTGATGTTACTATTATTTCTGGGAATAGAAATTTTATTGATGGATGGACCACTTATAGATCTGCAACCTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTAAAAGGTCAAGGATTTATAGCCCGAGACATAACATTTGAGAACACATCAGGACCCGAAAAGCACCAAGCAGTAGCATTTCGTTCCGACTCAGATTTATCGGTCTTGTTCCGATGCGCGGTGAGGGGTTACCAAGACACTCTCTACGCCCACTCAATGCGTCAATTCTACAGAGACTGTACAATTACTGGCACAGTCGATTTCATTTTTGGAGACGGTACAGCTATTTTTCAAAACTGTCAAATATTAGCACGAAAAGGATTGTCACAACAGAAAAACACAATCACAGCACAAGGTCGAAAAGAAATTGCTGAAACAACAGGTTTCACGATTCAATTTTGTAACATATCTGGTGAACCGGATCTATTAACTTCACTCAATTCTACGTATACGTATCTTGGAAGACCATGGAAGACGTATTCGCGAACAGTGATCATGCAATCGTACATGAGTAATGTAATTAGACCTCAAGGTTGGTTAGAATGGAACGGAAATACATCACTTGACACATTGTATTACGCAGAGTACCAAAATTATGGGCCTGGCGCCGGTTTGGGCGGTAGAGTTAATTGGCCTGGTTTTCATCTGCTCAATGATTCATCACAGGCTAGTAATTTTACCGTTGCTCAGTTCCTTTTGGGGAACTCATGGTTACCTCCTACGGGAGTTAAGTATACCGCTGGTCTAGCAGTTTAAAGTTACTGATATCTATGGACATGTAACATCATTTTTTTTTCTTGGATGCATTGGGCGATTTTTCTTTCTATTTCTATCGNTTTTACTGGTACGTCTATATAGATCAAGTATAAAATACCCGTTTAATGCGTGATTAA-TAAAATATTCGGACACTCTGGATGAACTATGTATTATGAGACTTAATAACTTTTGGAATTTGGGCAGAGTTTTCATCTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372974" ref_strand="+" ref_description="SGN-E372974 [TUS-32-D5]">
      <seq>gatttatagcccgagacataacatttgagaacacatcaggacccgaaaagcaccaagcagtagcatttcgttccgactcagatttatcggtcttgttccgatgcgcggtgaggggttaccaagacactctctacgcccactcaatgcgtcaattctacagagactgtacaattactggcacagtcgatttcatttttggagacggtacagctatttttcaaaactgtcaaatattagcacgaaaaggattgtcacaacagaaaaacacaatcacagcacaaggtcgaaaagaaattgctgaaacaacaggtttcacgattcaattttgtaacatatctggtgaaccggatctattaacttcactcaattctacgtatacgtatcttggaagaccatggaagacgtattcgcgaacagtgatcatgcaatcgtacatgagtaatgtaattagacctcaaggttggttagaatggaacggaaatacatcacttgacacattgtattacgcagagtaccaaaattatgggcctggcgccggtttgggcggtagagttaattggcctggttttcatctgctcaatgattcatcacaggctagtaattttaccgttgctcagttccttttggggaactcatggttacctcctacgggagttaagtataccgctggtctagcagtttaaagttactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="108300" stop="109591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108600" g_stop="109291" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E372974" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108600" e_stop="109291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTATAGCCCGAGACATAACATTTGAGAACACATCAGGACCCGAAAAGCACCAAGCAGTAGCATTTCGTTCCGACTCAGATTTATCGGTCTTGTTCCGATGCGCGGTGAGGGGTTACCAAGACACTCTCTACGCCCACTCAATGCGTCAATTCTACAGAGACTGTACAATTACTGGCACAGTCGATTTCATTTTTGGAGACGGTACAGCTATTTTTCAAAACTGTCAAATATTAGCACGAAAAGGATTGTCACAACAGAAAAACACAATCACAGCACAAGGTCGAAAAGAAATTGCTGAAACAACAGGTTTCACGATTCAATTTTGTAACATATCTGGTGAACCGGATCTATTAACTTCACTCAATTCTACGTATACGTATCTTGGAAGACCATGGAAGACGTATTCGCGAACAGTGATCATGCAATCGTACATGAGTAATGTAATTAGACCTCAAGGTTGGTTAGAATGGAACGGAAATACATCACTTGACACATTGTATTACGCAGAGTACCAAAATTATGGGCCTGGCGCCGGTTTGGGCGGTAGAGTTAATTGGCCTGGTTTTCATCTGCTCAATGATTCATCACAGGCTAGTAATTTTACCGTTGCTCAGTTCCTTTTGGGGAACTCATGGTTACCTCCTACGGGAGTTAAGTATACCGCTGGTCTAGCAGTTTAAAGTTACTGA</genome_strand>
        <mrna_strand>GATTTATAGCCCGAGACATAACATTTGAGAACACATCAGGACCCGAAAAGCACCAAGCAGTAGCATTTCGTTCCGACTCAGATTTATCGGTCTTGTTCCGATGCGCGGTGAGGGGTTACCAAGACACTCTCTACGCCCACTCAATGCGTCAATTCTACAGAGACTGTACAATTACTGGCACAGTCGATTTCATTTTTGGAGACGGTACAGCTATTTTTCAAAACTGTCAAATATTAGCACGAAAAGGATTGTCACAACAGAAAAACACAATCACAGCACAAGGTCGAAAAGAAATTGCTGAAACAACAGGTTTCACGATTCAATTTTGTAACATATCTGGTGAACCGGATCTATTAACTTCACTCAATTCTACGTATACGTATCTTGGAAGACCATGGAAGACGTATTCGCGAACAGTGATCATGCAATCGTACATGAGTAATGTAATTAGACCTCAAGGTTGGTTAGAATGGAACGGAAATACATCACTTGACACATTGTATTACGCAGAGTACCAAAATTATGGGCCTGGCGCCGGTTTGGGCGGTAGAGTTAATTGGCCTGGTTTTCATCTGCTCAATGATTCATCACAGGCTAGTAATTTTACCGTTGCTCAGTTCCTTTTGGGGAACTCATGGTTACCTCCTACGGGAGTTAAGTATACCGCTGGTCTAGCAGTTTAAAGTTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292697" ref_strand="+" ref_description="SGN-E292697 [cLET-11-B1]">
      <seq>gatttatagcccgagacataacatttgagaacacatcaggacccgaaaagcaccaagcagtagcatttcgttccgactcagatttatcggtcttgttccgatgcgcggtgaggggttaccaagacactctctacgcccactcaatgcgtcaattctacagagactgtacaattactggcacagtcgatttcatttttggagacggtacagctatttttcaaaactgtcaaatattagcacgaaaaggattgtcacaacagaaaaacacaatcacagcacaaggtcgaaaagaaattgctgaaacaacaggtttcacgattcaattttgtaacatatctggtgaaccggatctattaacttcactcaattctacgtatacgtatcttggaagaccatggaagacgtattcgcgaacagtgatcatgcaatcgtacatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="108300" stop="109339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108600" g_stop="109039" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E292697" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108600" e_stop="109039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTATAGCCCGAGACATAACATTTGAGAACACATCAGGACCCGAAAAGCACCAAGCAGTAGCATTTCGTTCCGACTCAGATTTATCGGTCTTGTTCCGATGCGCGGTGAGGGGTTACCAAGACACTCTCTACGCCCACTCAATGCGTCAATTCTACAGAGACTGTACAATTACTGGCACAGTCGATTTCATTTTTGGAGACGGTACAGCTATTTTTCAAAACTGTCAAATATTAGCACGAAAAGGATTGTCACAACAGAAAAACACAATCACAGCACAAGGTCGAAAAGAAATTGCTGAAACAACAGGTTTCACGATTCAATTTTGTAACATATCTGGTGAACCGGATCTATTAACTTCACTCAATTCTACGTATACGTATCTTGGAAGACCATGGAAGACGTATTCGCGAACAGTGATCATGCAATCGTACATGAGT</genome_strand>
        <mrna_strand>GATTTATAGCCCGAGACATAACATTTGAGAACACATCAGGACCCGAAAAGCACCAAGCAGTAGCATTTCGTTCCGACTCAGATTTATCGGTCTTGTTCCGATGCGCGGTGAGGGGTTACCAAGACACTCTCTACGCCCACTCAATGCGTCAATTCTACAGAGACTGTACAATTACTGGCACAGTCGATTTCATTTTTGGAGACGGTACAGCTATTTTTCAAAACTGTCAAATATTAGCACGAAAAGGATTGTCACAACAGAAAAACACAATCACAGCACAAGGTCGAAAAGAAATTGCTGAAACAACAGGTTTCACGATTCAATTTTGTAACATATCTGGTGAACCGGATCTATTAACTTCACTCAATTCTACGTATACGTATCTTGGAAGACCATGGAAGACGTATTCGCGAACAGTGATCATGCAATCGTACATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266894" ref_strand="+" ref_description="SGN-E266894 [cLEI-7-I3]">
      <seq>tcgttccgactcagatttatcggtcttgttccgatgcgcggtgaggggttaccaagacactctctacgcccactcaatgcgtcaattctacagagactgtacaattactggcacagtcgatttcatttttggagacggtacagctatttttcaaaactgtcaaatattagcacgaaaaggattgtcacaacagaaaaacacaatcacagcacaaggtcgaaaagaaattgctgaaacaacaggtttcacgattcaattttgtaacatatctggtgaaccggatctattaacttcactcaattctacgtatacgtatcttggaagaccatggaagacgtattcgcgaacagtgatcatgcaatcgtacatgagtaatgtaattagacctcaaggttggttagaatggaacggaaatacatcacttgacacattgtattacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="108367" stop="109407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108667" g_stop="109107" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E266894" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108667" e_stop="109107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTCCGACTCAGATTTATCGGTCTTGTTCCGATGCGCGGTGAGGGGTTACCAAGACACTCTCTACGCCCACTCAATGCGTCAATTCTACAGAGACTGTACAATTACTGGCACAGTCGATTTCATTTTTGGAGACGGTACAGCTATTTTTCAAAACTGTCAAATATTAGCACGAAAAGGATTGTCACAACAGAAAAACACAATCACAGCACAAGGTCGAAAAGAAATTGCTGAAACAACAGGTTTCACGATTCAATTTTGTAACATATCTGGTGAACCGGATCTATTAACTTCACTCAATTCTACGTATACGTATCTTGGAAGACCATGGAAGACGTATTCGCGAACAGTGATCATGCAATCGTACATGAGTAATGTAATTAGACCTCAAGGTTGGTTAGAATGGAACGGAAATACATCACTTGACACATTGTATTACGC</genome_strand>
        <mrna_strand>TCGTTCCGACTCAGATTTATCGGTCTTGTTCCGATGCGCGGTGAGGGGTTACCAAGACACTCTCTACGCCCACTCAATGCGTCAATTCTACAGAGACTGTACAATTACTGGCACAGTCGATTTCATTTTTGGAGACGGTACAGCTATTTTTCAAAACTGTCAAATATTAGCACGAAAAGGATTGTCACAACAGAAAAACACAATCACAGCACAAGGTCGAAAAGAAATTGCTGAAACAACAGGTTTCACGATTCAATTTTGTAACATATCTGGTGAACCGGATCTATTAACTTCACTCAATTCTACGTATACGTATCTTGGAAGACCATGGAAGACGTATTCGCGAACAGTGATCATGCAATCGTACATGAGTAATGTAATTAGACCTCAAGGTTGGTTAGAATGGAACGGAAATACATCACTTGACACATTGTATTACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266879" ref_strand="+" ref_description="SGN-E266879 [cLEI-7-C5]">
      <seq>tcgttccgactcagatttatcggtcttgttccgatgcgcggtgaggggttaccaagacactctctacgcccactcaatgcgtcaattctacagagactgtacaattactggcacagtcgatttcatttttggagacggtacagctatttttcaaaactgtcaaatattagcacgaaaaggattgtcacaacagaaaaacacaatcacagcacaaggtcgaaaagaaattgctgaaacaacaggtttcacgattcaattttgtaacatatctggtgaaccggatctattaacttcactcaattctacgtatacgtatcttggaagaccatggaagacgtattcgcgaacagtgatcatgcaatcgtacatgagtaatgtaattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="108367" stop="109350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108667" g_stop="109050" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E266879" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108667" e_stop="109050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTCCGACTCAGATTTATCGGTCTTGTTCCGATGCGCGGTGAGGGGTTACCAAGACACTCTCTACGCCCACTCAATGCGTCAATTCTACAGAGACTGTACAATTACTGGCACAGTCGATTTCATTTTTGGAGACGGTACAGCTATTTTTCAAAACTGTCAAATATTAGCACGAAAAGGATTGTCACAACAGAAAAACACAATCACAGCACAAGGTCGAAAAGAAATTGCTGAAACAACAGGTTTCACGATTCAATTTTGTAACATATCTGGTGAACCGGATCTATTAACTTCACTCAATTCTACGTATACGTATCTTGGAAGACCATGGAAGACGTATTCGCGAACAGTGATCATGCAATCGTACATGAGTAATGTAATTAG</genome_strand>
        <mrna_strand>TCGTTCCGACTCAGATTTATCGGTCTTGTTCCGATGCGCGGTGAGGGGTTACCAAGACACTCTCTACGCCCACTCAATGCGTCAATTCTACAGAGACTGTACAATTACTGGCACAGTCGATTTCATTTTTGGAGACGGTACAGCTATTTTTCAAAACTGTCAAATATTAGCACGAAAAGGATTGTCACAACAGAAAAACACAATCACAGCACAAGGTCGAAAAGAAATTGCTGAAACAACAGGTTTCACGATTCAATTTTGTAACATATCTGGTGAACCGGATCTATTAACTTCACTCAATTCTACGTATACGTATCTTGGAAGACCATGGAAGACGTATTCGCGAACAGTGATCATGCAATCGTACATGAGTAATGTAATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372973" ref_strand="+" ref_description="SGN-E372973 [TUS-32-D5](-)">
      <seq>ttactggcacagtcgatttcatttttggagacggtacagctatttttcaaaactgtcaaatattagcacgaaaaggattgtcacaacagaaaaacacaatcacagcacaaggtcgaaaagaaattgctgaaacaacaggtttcacgattcaattttgtaacatatctggtgaaccggatctattaacttcactcaattctacgtatacgtatcttggaagaccatggaagacgtattcgcgaacagtgatcatgcaatcgtacatgagtaatgtaattagacctcaaggttggttagaatggaacggaaatacatcacttgacacattgtattacgcagagtaccaaaattatgggcctggcgccggtttgggcggtagagttaattggcctggttttcatctgctcaatgattcatcacaggctagtaattttaccgttgctcagttccttttggggaactcatggttacctcctacgggagttaagtataccgctggtctagcagtttaaagttactgatatctatggacatgtaacatcatttttttttcttggatgcattgggcgatttttctttctatttctatcgtttttactggtacgtctatatagatcaagtataaaatacacgtttaatgcgtgattaattaagatattcggacactctggatgaactatgtattatgagacttaataacttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="108471" stop="109777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108771" g_stop="109476" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E372973" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108771" e_stop="109476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTGGCACAGTCGATTTCATTTTTGGAGACGGTACAGCTATTTTTCAAAACTGTCAAATATTAGCACGAAAAGGATTGTCACAACAGAAAAACACAATCACAGCACAAGGTCGAAAAGAAATTGCTGAAACAACAGGTTTCACGATTCAATTTTGTAACATATCTGGTGAACCGGATCTATTAACTTCACTCAATTCTACGTATACGTATCTTGGAAGACCATGGAAGACGTATTCGCGAACAGTGATCATGCAATCGTACATGAGTAATGTAATTAGACCTCAAGGTTGGTTAGAATGGAACGGAAATACATCACTTGACACATTGTATTACGCAGAGTACCAAAATTATGGGCCTGGCGCCGGTTTGGGCGGTAGAGTTAATTGGCCTGGTTTTCATCTGCTCAATGATTCATCACAGGCTAGTAATTTTACCGTTGCTCAGTTCCTTTTGGGGAACTCATGGTTACCTCCTACGGGAGTTAAGTATACCGCTGGTCTAGCAGTTTAAAGTTACTGATATCTATGGACATGTAACATCATTTTTTTTTCTTGGATGCATTGGGCGATTTTTCTTTCTATTTCTATCGTTTTTACTGGTACGTCTATATAGATCAAGTATAAAATACACGTTTAATGCGTGATTAATTAAGATATTCGGACACTCTGGATGAACTATGTATTATGAGACTTAATAACTTTTGA</genome_strand>
        <mrna_strand>TTACTGGCACAGTCGATTTCATTTTTGGAGACGGTACAGCTATTTTTCAAAACTGTCAAATATTAGCACGAAAAGGATTGTCACAACAGAAAAACACAATCACAGCACAAGGTCGAAAAGAAATTGCTGAAACAACAGGTTTCACGATTCAATTTTGTAACATATCTGGTGAACCGGATCTATTAACTTCACTCAATTCTACGTATACGTATCTTGGAAGACCATGGAAGACGTATTCGCGAACAGTGATCATGCAATCGTACATGAGTAATGTAATTAGACCTCAAGGTTGGTTAGAATGGAACGGAAATACATCACTTGACACATTGTATTACGCAGAGTACCAAAATTATGGGCCTGGCGCCGGTTTGGGCGGTAGAGTTAATTGGCCTGGTTTTCATCTGCTCAATGATTCATCACAGGCTAGTAATTTTACCGTTGCTCAGTTCCTTTTGGGGAACTCATGGTTACCTCCTACGGGAGTTAAGTATACCGCTGGTCTAGCAGTTTAAAGTTACTGATATCTATGGACATGTAACATCATTTTTTTTTCTTGGATGCATTGGGCGATTTTTCTTTCTATTTCTATCGTTTTTACTGGTACGTCTATATAGATCAAGTATAAAATACACGTTTAATGCGTGATTAATTAAGATATTCGGACACTCTGGATGAACTATGTATTATGAGACTTAATAACTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374522" ref_strand="+" ref_description="SGN-E374522 [TUS-38-L4](-)">
      <seq>aaatattagcccgaaaaggattgtcccaacagaaaaacacaatcacagcacaaggtcgaaaagaaattgctgaaacaacaggtttcacgattcaattttgtaacatatctggtgaaccggatctattaacttcactcaattctacgtatacgtatcttggaagaccatggaagacgtattcgcgaacagtgatcatgcaatcgtacatgagtaatgtaattagacctcaaggttggttagaatggaacggaaatacatcccttgacccattgtattacgcagagtaccaaaattatgggcctggcgccggtttgggcggtaaagttaattggcctggttttcatctgctcaatgattcatcacaggctagtaattttaccgttgctcagttccttttggggaactcatggttacctcctacgggagttaagtatacccctggtctagcagtttaaagttactgatatctatggacatgtaacatcattttttttttttggatgcattgggcgatttttctttctatttctatcgtttttactggtacgtctatatagatcaagtataaaatacacgtttaatgcgtgattaattaagatattcggaccctctggatgaactatgtattatgagacttaataacttttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="+" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="108528" stop="109777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108828" g_stop="109476" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="650" polyA_stop="666"/>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="+" ref_id="SGN-E374522" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108828" e_stop="109476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATTAGCACGAAAAGGATTGTCACAACAGAAAAACACAATCACAGCACAAGGTCGAAAAGAAATTGCTGAAACAACAGGTTTCACGATTCAATTTTGTAACATATCTGGTGAACCGGATCTATTAACTTCACTCAATTCTACGTATACGTATCTTGGAAGACCATGGAAGACGTATTCGCGAACAGTGATCATGCAATCGTACATGAGTAATGTAATTAGACCTCAAGGTTGGTTAGAATGGAACGGAAATACATCACTTGACACATTGTATTACGCAGAGTACCAAAATTATGGGCCTGGCGCCGGTTTGGGCGGTAGAGTTAATTGGCCTGGTTTTCATCTGCTCAATGATTCATCACAGGCTAGTAATTTTACCGTTGCTCAGTTCCTTTTGGGGAACTCATGGTTACCTCCTACGGGAGTTAAGTATACCGCTGGTCTAGCAGTTTAAAGTTACTGATATCTATGGACATGTAACATCATTTTTTTTTCTTGGATGCATTGGGCGATTTTTCTTTCTATTTCTATCGTTTTTACTGGTACGTCTATATAGATCAAGTATAAAATACACGTTTAATGCGTGATTAATTAAGATATTCGGACACTCTGGATGAACTATGTATTATGAGACTTAATAACTTTTGA</genome_strand>
        <mrna_strand>AAATATTAGCCCGAAAAGGATTGTCCCAACAGAAAAACACAATCACAGCACAAGGTCGAAAAGAAATTGCTGAAACAACAGGTTTCACGATTCAATTTTGTAACATATCTGGTGAACCGGATCTATTAACTTCACTCAATTCTACGTATACGTATCTTGGAAGACCATGGAAGACGTATTCGCGAACAGTGATCATGCAATCGTACATGAGTAATGTAATTAGACCTCAAGGTTGGTTAGAATGGAACGGAAATACATCCCTTGACCCATTGTATTACGCAGAGTACCAAAATTATGGGCCTGGCGCCGGTTTGGGCGGTAAAGTTAATTGGCCTGGTTTTCATCTGCTCAATGATTCATCACAGGCTAGTAATTTTACCGTTGCTCAGTTCCTTTTGGGGAACTCATGGTTACCTCCTACGGGAGTTAAGTATACCCCTGGTCTAGCAGTTTAAAGTTACTGATATCTATGGACATGTAACATCATTTTTTTTTTTTGGATGCATTGGGCGATTTTTCTTTCTATTTCTATCGTTTTTACTGGTACGTCTATATAGATCAAGTATAAAATACACGTTTAATGCGTGATTAATTAAGATATTCGGACCCTCTGGATGAACTATGTATTATGAGACTTAATAACTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368545" ref_strand="+" ref_description="SGN-E368545 [TUS-23-P14](-)">
      <seq>cttgttgttattcttttcattgttggaaaacatatcgtgtgagtttattgggaaatagtggaggaaatattaacctatgtgttatgtttatttactctatcctaacaaacctatcgcttgtgttttcaagattccgatgctttggtttggatgtgattcccttttccgtttggtttatttgtttgattgagtaaatgttatagtccataaagtatgtttttttctttggtcactgcaattgaaatttgctaatgtacttttttattttgtgaactccactcgagtccatttggaccccatctctctccttgcatcctatgtttgagccacaaaggctcaaacctttacccctgagtcagcctcactagcaataaagaaaatgaatagatcctgaagtttggacgaattcgaaataggccaaagcaaatttaaaagttgaagaagttgggccaaaaagcctccttcatcttattttattttatttattttgtattttgttattttggggcctaagcccttgtggctttgttttttttcattattattatctcgtttaatttaggacagatacacatcaaatgggcctaaatcccagaaacgaaagggttcaaataccgatttaagtagacagaaattgaatttggactcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="115065" stop="113816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114765" g_stop="114116" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="650" r_length="650" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="670"/>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E368545" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114765" e_stop="114116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTGTTATTCTTTTCATTGTTGGAAAACATATCGTGTGAGTTTATTGGGAAATAGTGGAGGAAATATTAACCTATGTGTTATGTTTATTTACTCTATCCTAACAAACCTATCGCTTGTGTTTTCAAGATTCCGATGCTTTGGTTTGGATGTGATTCCCTTTTCCGTTTGGTTTATTTGTTTGATTGAGTAAATGTTATAGTCCATAAAGTATGTTTTTTTCTTTGGTCACTGCAATTGAAATTTGCTAATGTACTTTTTTATTTTGTGAACTCCACTCGAGTCCATTTGGACCCCATCTCTCTCCTTGCATCCTATGTTTGAGCCACAAAGGCTCAAACCTTTACCCCTGAGTCAGCCTCACTAGCAATAGAGAAGATGAATAGATCCTGAAGTTTGGACGAATTCGAAATAGGCCAAAGCAAATTTAAGAGTTGAAGAAGTTGGGCCAAGAAGCCTCCTTCATCTTATTTTATTTTATTTATTTTGTATTTTGTTATTTTGGGGCCTAAGCCCTTGTGGCTTTGTTTTTTTTCATTATTATTATCTCGTTTAATTTAGGACAGATACACATCAAATGGGCCTAAATCCCAGAAACGAAAGGGTTCAAATACCGATCTAAGTAGACAGAAATTGAATTTGGACTCAA</genome_strand>
        <mrna_strand>CTTGTTGTTATTCTTTTCATTGTTGGAAAACATATCGTGTGAGTTTATTGGGAAATAGTGGAGGAAATATTAACCTATGTGTTATGTTTATTTACTCTATCCTAACAAACCTATCGCTTGTGTTTTCAAGATTCCGATGCTTTGGTTTGGATGTGATTCCCTTTTCCGTTTGGTTTATTTGTTTGATTGAGTAAATGTTATAGTCCATAAAGTATGTTTTTTTCTTTGGTCACTGCAATTGAAATTTGCTAATGTACTTTTTTATTTTGTGAACTCCACTCGAGTCCATTTGGACCCCATCTCTCTCCTTGCATCCTATGTTTGAGCCACAAAGGCTCAAACCTTTACCCCTGAGTCAGCCTCACTAGCAATAAAGAAAATGAATAGATCCTGAAGTTTGGACGAATTCGAAATAGGCCAAAGCAAATTTAAAAGTTGAAGAAGTTGGGCCAAAAAGCCTCCTTCATCTTATTTTATTTTATTTATTTTGTATTTTGTTATTTTGGGGCCTAAGCCCTTGTGGCTTTGTTTTTTTTCATTATTATTATCTCGTTTAATTTAGGACAGATACACATCAAATGGGCCTAAATCCCAGAAACGAAAGGGTTCAAATACCGATTTAAGTAGACAGAAATTGAATTTGGACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549808" ref_strand="+" ref_description="SGN-E549808 [TUS-6-F4]">
      <seq>agttagtaaaggctggaaagaacagtgcaaaaggttaggagatatatcttttaactttgaaaagagtagcttagctgagagatagaggataaaaattagagttaatagtgaacgattgaggtgatattgcttcggttctgttttgtggcaatctcaccggagttgtcagaattcacattgtggtggaggaatcgcctcagttctctgctcgttttgtcccagtcaccgcctcttaaaaggtaaaaatctcaaattttgtagcttctgtttgggttgacgtagatgtataatttggcgggatcttccagtccgttcttgttatttccgctgcttggctttcctttttgtgatattaaaattgctaacaatgatatctcttctttcatttatcttgctatttctgaatgatgttgttcctttgtgttgtttctgaattcgagtgtttaaactagccctgaaaaaatgtttatttattttagtttaactctatccgtggcgaatcagtgtatcaatactgtgtggctttctctttcatancgagctagtatacatagtcactcgagctcactttttttatgtactagtcaacaggtttctgcaactaccatgctactatttagaattttaaggttttgacaaatcttggctatttcttttatattcttatttcttagggaattgatgtgtgtttatagttatttatgaggaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="116044" stop="114733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115744" g_stop="115033" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E549808" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115744" e_stop="115033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTAGTAAAGGCTGGAAAGAACAGTGCAAAAGGTTAGGAGATATATCTTTTAACTTTGAAAAGAGTAGCTTAGCTGAGAGATAGAGGATAAAAATTAGAGTTAATAGTGAACGATTGAGGTGATATTGCTTCGGTTCTGTTTTGTGGCAATCTCACCGGAGTTGTCAGAATTCACATTGTGGTGGAGGAATCGCCTCAGTTCTCTGCTCGTTTTGTCCCAGTCACCGCCTCTTAAAAGGTAAAAATCTCAAATTTTGTAGCTTCTGTTTGGGTTGACGTAGATGTATAATTTGGCGGGATCTTCCAGTCCGTTCTTGTTATTTCCGCTGCTTGGCTTTCCTTTTTGTGATATTAAAATTGCTAACAATGATATCTCTTCTTTCATTTATCTTGCTATTTCTGAATGATGTTGTTCCTTTGTGTTGTTTCTGAATTCGAGTGTTTAAACTAGCCCTGAAAAAATGTTTATTTATTTTAGTTTAACTCTATCCGTGGCGAATCAGTGTATCAATACTGTGTGGCTTTCTCTTTCATA-CGAGCTAAGTATACATAGTCACTCGAGCTCACTTTTTTTATGTACTAGTCAACAGGTTTCTGCAACTACCATGCTACTATTTAGAATTTAAAGGTTT-GACAAATCTTGTCTATTTCTTTTATATTCTTATTTCTTAGTGTATTGATGTGTTTTATAAGTTATTTATGAGGAAAATT</genome_strand>
        <mrna_strand>AGTTAGTAAAGGCTGGAAAGAACAGTGCAAAAGGTTAGGAGATATATCTTTTAACTTTGAAAAGAGTAGCTTAGCTGAGAGATAGAGGATAAAAATTAGAGTTAATAGTGAACGATTGAGGTGATATTGCTTCGGTTCTGTTTTGTGGCAATCTCACCGGAGTTGTCAGAATTCACATTGTGGTGGAGGAATCGCCTCAGTTCTCTGCTCGTTTTGTCCCAGTCACCGCCTCTTAAAAGGTAAAAATCTCAAATTTTGTAGCTTCTGTTTGGGTTGACGTAGATGTATAATTTGGCGGGATCTTCCAGTCCGTTCTTGTTATTTCCGCTGCTTGGCTTTCCTTTTTGTGATATTAAAATTGCTAACAATGATATCTCTTCTTTCATTTATCTTGCTATTTCTGAATGATGTTGTTCCTTTGTGTTGTTTCTGAATTCGAGTGTTTAAACTAGCCCTGAAAAAATGTTTATTTATTTTAGTTTAACTCTATCCGTGGCGAATCAGTGTATCAATACTGTGTGGCTTTCTCTTTCATANCGAGCT-AGTATACATAGTCACTCGAGCTCACTTTTTTTATGTACTAGTCAACAGGTTTCTGCAACTACCATGCTACTATTTAGAATTTTAAGGTTTTGACAAATCTTGGCTATTTCTTTTATATTCTTATTTCTTAGGGAATTGATGTGTGTTTATAGTTATTTATGAGGAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368546" ref_strand="+" ref_description="SGN-E368546 [TUS-23-P14]">
      <seq>gttagtaaaggctggaaagaacagtgcaaaaggttaggagatatatcttttaactttgaaaagagtagcttagctgagagatagaggataaaaattagagttaatagtgaacgattgaggtgatattgcttcggttctgttttgtggcaatctcaccggagttgtcagaattcacattgtggtggaggaatcgcctcagttctctgctcgttttgtcccagtcaccgcctcttaaaaggtaaaaatctcaaattttgtagcttctgtttgggttgacgtagatgtataatttggcgggatcttccagtccgttcttgttatttccgctgcttggctttcctttttgtgatattaaaattgctaacaatgatatctcttctttcatttatcttgctatttctgaatgatgttgttcctttgtgttgtttctgaattcgagtgtttaaactagccctgaaaaaatgtttatttattttagtttaactctatccgtggcgaatcagtgtatcaatactgtgtggctttctctttcatacgagctaagtatacatagtcactcgagctcactttttttatgtactagtcaacaggtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="116043" stop="114849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115743" g_stop="115149" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E368546" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115743" e_stop="115149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTAAAGGCTGGAAAGAACAGTGCAAAAGGTTAGGAGATATATCTTTTAACTTTGAAAAGAGTAGCTTAGCTGAGAGATAGAGGATAAAAATTAGAGTTAATAGTGAACGATTGAGGTGATATTGCTTCGGTTCTGTTTTGTGGCAATCTCACCGGAGTTGTCAGAATTCACATTGTGGTGGAGGAATCGCCTCAGTTCTCTGCTCGTTTTGTCCCAGTCACCGCCTCTTAAAAGGTAAAAATCTCAAATTTTGTAGCTTCTGTTTGGGTTGACGTAGATGTATAATTTGGCGGGATCTTCCAGTCCGTTCTTGTTATTTCCGCTGCTTGGCTTTCCTTTTTGTGATATTAAAATTGCTAACAATGATATCTCTTCTTTCATTTATCTTGCTATTTCTGAATGATGTTGTTCCTTTGTGTTGTTTCTGAATTCGAGTGTTTAAACTAGCCCTGAAAAAATGTTTATTTATTTTAGTTTAACTCTATCCGTGGCGAATCAGTGTATCAATACTGTGTGGCTTTCTCTTTCATACGAGCTAAGTATACATAGTCACTCGAGCTCACTTTTTTTATGTACTAGTCAACAGGTTTC</genome_strand>
        <mrna_strand>GTTAGTAAAGGCTGGAAAGAACAGTGCAAAAGGTTAGGAGATATATCTTTTAACTTTGAAAAGAGTAGCTTAGCTGAGAGATAGAGGATAAAAATTAGAGTTAATAGTGAACGATTGAGGTGATATTGCTTCGGTTCTGTTTTGTGGCAATCTCACCGGAGTTGTCAGAATTCACATTGTGGTGGAGGAATCGCCTCAGTTCTCTGCTCGTTTTGTCCCAGTCACCGCCTCTTAAAAGGTAAAAATCTCAAATTTTGTAGCTTCTGTTTGGGTTGACGTAGATGTATAATTTGGCGGGATCTTCCAGTCCGTTCTTGTTATTTCCGCTGCTTGGCTTTCCTTTTTGTGATATTAAAATTGCTAACAATGATATCTCTTCTTTCATTTATCTTGCTATTTCTGAATGATGTTGTTCCTTTGTGTTGTTTCTGAATTCGAGTGTTTAAACTAGCCCTGAAAAAATGTTTATTTATTTTAGTTTAACTCTATCCGTGGCGAATCAGTGTATCAATACTGTGTGGCTTTCTCTTTCATACGAGCTAAGTATACATAGTCACTCGAGCTCACTTTTTTTATGTACTAGTCAACAGGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247007" ref_strand="+" ref_description="SGN-E247007 [cLEF-41-I2]">
      <seq>gttagtaaaggctggaaagaacagtgcaaaaggttaggagatatatcttttaactttgaaaagagtagcttagctgagagatagaggataaaaattagagttaatagtgaacgattgaggtgatattgcttcggttctgttttgtggcaatctcaccggagttgtcagaattcacattgtggtggaggaatcgcctcagttctctgctcgttttgtcccagtcaccgcctcttaaaaggtaaaaatctcaaattttgtagcttctgtttgggttgacgtagatgtataatttggcgggatcttccagtccgttcttgttatttccgctgcttggctttcctttttgtgatattaaaattgctaacaatgatatctcttctttcatttatcttgctatttctgaatgatgttgttcctttgtgttggttctgaattcgagtgtttaaactagccctgaaaaaatgtttatttattttagtttaactctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="116043" stop="114955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115743" g_stop="115255" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E247007" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115743" e_stop="115255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTAAAGGCTGGAAAGAACAGTGCAAAAGGTTAGGAGATATATCTTTTAACTTTGAAAAGAGTAGCTTAGCTGAGAGATAGAGGATAAAAATTAGAGTTAATAGTGAACGATTGAGGTGATATTGCTTCGGTTCTGTTTTGTGGCAATCTCACCGGAGTTGTCAGAATTCACATTGTGGTGGAGGAATCGCCTCAGTTCTCTGCTCGTTTTGTCCCAGTCACCGCCTCTTAAAAGGTAAAAATCTCAAATTTTGTAGCTTCTGTTTGGGTTGACGTAGATGTATAATTTGGCGGGATCTTCCAGTCCGTTCTTGTTATTTCCGCTGCTTGGCTTTCCTTTTTGTGATATTAAAATTGCTAACAATGATATCTCTTCTTTCATTTATCTTGCTATTTCTGAATGATGTTGTTCCTTTGTGTTGTTTCTGAATTCGAGTGTTTAAACTAGCCCTGAAAAAATGTTTATTTATTTTAGTTTAACTCTAT</genome_strand>
        <mrna_strand>GTTAGTAAAGGCTGGAAAGAACAGTGCAAAAGGTTAGGAGATATATCTTTTAACTTTGAAAAGAGTAGCTTAGCTGAGAGATAGAGGATAAAAATTAGAGTTAATAGTGAACGATTGAGGTGATATTGCTTCGGTTCTGTTTTGTGGCAATCTCACCGGAGTTGTCAGAATTCACATTGTGGTGGAGGAATCGCCTCAGTTCTCTGCTCGTTTTGTCCCAGTCACCGCCTCTTAAAAGGTAAAAATCTCAAATTTTGTAGCTTCTGTTTGGGTTGACGTAGATGTATAATTTGGCGGGATCTTCCAGTCCGTTCTTGTTATTTCCGCTGCTTGGCTTTCCTTTTTGTGATATTAAAATTGCTAACAATGATATCTCTTCTTTCATTTATCTTGCTATTTCTGAATGATGTTGTTCCTTTGTGTTGGTTCTGAATTCGAGTGTTTAAACTAGCCCTGAAAAAATGTTTATTTATTTTAGTTTAACTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329254" ref_strand="+" ref_description="SGN-E329254 [cTOD-2-N17]">
      <seq>cgatttcttcacgcatgtaaaacagtgaacaaacccagaagctcaatcgcgcgtgatagtcgtccctgtcctcgtacggttgcaacagcaaaaagcaccggtaaggcacgcgttttgcgtctttgtgacctccggataagtccacgttgcgctcgaagcaatagtcgtcgattcgcccttacctctttcggaatgggtcaaaatcttagcaaaatgtgtgtttcccatttatgcaaaaagttgtttgagttatgaacaagaattcgaaatgggtctttggttttacttgaaatcagcccgcctctccctaagttttaccctaattttcaagctatacatgcttcttattattcactataggaaagaggcggaaaaaaaagaaaaaatttttgagttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0017H09-OVifp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0017H09.1" temp_strand="-" temp_description="C07SLm0017H09.1  AC232650.1 htgs_phase:1 submitted_to_sgn_as:gi|205831307|gb|AC232650.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0017H09, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="116436" stop="115438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116136" g_stop="115738" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0017H09.1" gen_strand="-" ref_id="SGN-E329254" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0017H09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116136" e_stop="115738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTCTTCACGCATGTAAAACAGTGAACAAACCCAGAAGCTCAATCGCGCGTGATAGTCGTCCCTGTCCTCGTACGGTTGCAACAGCAAAAAGCACCGGTAAGGCACGCGTTTTGCGTCTTTGTGACCTCCGGATAAGTCCACGTTGCGCTCGAAGCAATAGTCGTCGATTCGCCCTTACCTCTTTCGGAATGGGTCAAAATCTTAGCAAAATGTGTGTTTCCCATTTATGCAAAAAGTTGTTTGAGTTATGAACAAGAATTCGAAATGGGTCTTTGGTTTTACTTGAAATCAGCCCGCCTCTCCCTAAGTTTTACCCTAATTTTCAAGCTATACATGCTTCTTATTATTCACTATAGGAAAGAGGCGGAAAAAAAAGAAAAAATTTTTGAGTTAGT</genome_strand>
        <mrna_strand>CGATTTCTTCACGCATGTAAAACAGTGAACAAACCCAGAAGCTCAATCGCGCGTGATAGTCGTCCCTGTCCTCGTACGGTTGCAACAGCAAAAAGCACCGGTAAGGCACGCGTTTTGCGTCTTTGTGACCTCCGGATAAGTCCACGTTGCGCTCGAAGCAATAGTCGTCGATTCGCCCTTACCTCTTTCGGAATGGGTCAAAATCTTAGCAAAATGTGTGTTTCCCATTTATGCAAAAAGTTGTTTGAGTTATGAACAAGAATTCGAAATGGGTCTTTGGTTTTACTTGAAATCAGCCCGCCTCTCCCTAAGTTTTACCCTAATTTTCAAGCTATACATGCTTCTTATTATTCACTATAGGAAAGAGGCGGAAAAAAAAGAAAAAATTTTTGAGTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>59</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="15614" PGL_stop="14808"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15614" e_stop="14808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="15614" e_stop="14808" e_length="807"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15614" stop="14808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGATATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGAAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCTTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTAGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGTCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  D  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  E  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  *  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  V  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  I  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  K  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  L  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  S  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  L  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  S  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0017H09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15612" stop="14860"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASALGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="16273" PGL_stop="15625"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16273" e_stop="15625"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="16273" e_stop="15625" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16273" stop="15625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16272" stop="15888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCTAGTCATTCAGAACGAGAGAGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  L  V  I  Q  N  E  R  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  *  S  F  R  T  R  E  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0017H09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16272" stop="15625"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFLVIQNERDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="24201" PGL_stop="22412"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24201" e_stop="24027"/>
            <exon e_start="23937" e_stop="23783"/>
            <exon e_start="23508" e_stop="22412"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.645" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24201" e_stop="24027" e_length="175"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.645">
            <gDNA_intron_boundary i_start="24026" i_stop="23938" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23937" e_stop="23783" e_length="155"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23782" i_stop="23509" i_length="274"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="23508" e_stop="22412" e_length="1097"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24201" stop="24027"/>
              <exon start="23937" stop="23783"/>
              <exon start="23508" stop="23097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24200" stop="24027"/>
              <exon start="23937" stop="23783"/>
              <exon start="23508" stop="23086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24124" stop="24027"/>
              <exon start="23937" stop="23783"/>
              <exon start="23508" stop="23215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23131" stop="22412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23127" stop="22606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363531" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23042" stop="22435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23034" stop="22412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23032" stop="22640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23018" stop="22606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364251" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23008" stop="22635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219450" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACACGATTAGGTGTTCCTGCATGGATTAAACAAGGTGATAGAAGAATGTTGGATGAAGAAGAAGGCAAAGACATGAAGTCTTTTATAAACATGACAGTTGCAAAAGATGGTAGTGGTAATTTTAGTTCCATAAATGAAGCCTTAAAGGCAGTTCCACAAAGCTTTGAAGGAAG : GTTCTTTATTTATATTAAAGAAGGAGTTTATGAAGAAAATGTAGTTGTGTCACAAGTCAATCTTACATTTGTTGGAGATGGATCCCAAAAGAGTATTATCTCCGGCAGCAAAAACATTGTGGATGACCTCACAACATACCAAACCGCAACAGTTG : CTATTTCAGGAGATGGATTTTTTGCATATAAGATGGGATTCCGTAACACAGCGGGTCCTGAAAAATTAGAAGCAGTGGCTCTACGAGTCCAAGCTGATCATGCAATATTTATGAATTGTCGTATGGAGGGTCACCAAAGTGTGATCTATGCTCAGGCCTATCGACAATTTTATCGTGGATGTTACATCACAGGCACAGTTGACATCATATCAGGAAACGCGGCTGCTGTGTTCCAAAACTGTCAAATTTACCTAAGGAAACCAATGAATGACCAAAAGAACGTCATTACCGCACAAGGAAGGTTGAGCAAGCGCCAAACTACAGGGACTGTCTTGCAAAGTTGTAGCATTTTCGCAGACGATACACTTGAACCTGAAAAATCAAAGTTCAAGAGTTACTTGGGTCGACCAATGAAGGAATACTCTAGGACGATTGTAATGGAAACGGACATTACTGACGTAATTGATCCAGAAGGATGGGAGGCTACAAACGGGGACTATGCATTAAGCACTCTGTATTTCGGGGAATATAGCAACAGAGGAGCTGGATCTGGAACGGGCTCCAGAGTTAAATGGGCTGGATATCAAGGCACAATAAGTAAGGATATCGCGTTGAATTACACAGTTGAATCCTTCTTACAAGGCCAAACTTGGTTGAAGGATCTCGATGTTCAAGTTCGTTTTAGCCTTTCCAGCTAATCATCTTCTTCGTCATCGTCATCATCTTCATCATGTCAAATTAATCTTTCTTCCTTTTAATTCCATGTCAAATTACGATCGTCTTCATCTTAGTTATCTCAATTTAGTCTGTTCTTAATCATGATCTTGTACAAGTAGTGAACATTCTACGAAAAAATTTTCTAAGACGTATTTACGTACGTATGTACGTATATTATAACAAAGAATCGATATATACTGAATAATTGTAATGAATACTATTCATTATCTAATTTTCACTTGTGCGCGGTAGATTCATATAAGGACTACAAATGAAGGCATTAGAGGAAGAAAATTATAAAAAAAAAAAAAGTGTTTAGTGCATTTGAAGGAATAATATAAATAGATCGTTTAATTTGTCTCGAATTTTCAATTATACAC</gDNA_template>
            <first_frame> Q  H  D  *  V  F  L  H  G  L  N  K  V  I  E  E  C  W  M  K  K  K  A  K  T  *  S  L  L  *  T  *  Q  L  Q  K  M  V  V  V  I  L  V  P  *  M  K  P  *  R  Q  F  H  K  A  L  K  E   : G  S  L  F  I  L  K  K  E  F  M  K  K  M  *  L  C  H  K  S  I  L  H  L  L  E  M  D  P  K  R  V  L  S  P  A  A  K  T  L  W  M  T  S  Q  H  T  K  P  Q  Q  L  :  L  F  Q  E  M  D  F  L  H  I  R  W  D  S  V  T  Q  R  V  L  K  N  *  K  Q  W  L  Y  E  S  K  L  I  M  Q  Y  L  *  I  V  V  W  R  V  T  K  V  *  S  M  L  R  P  I  D  N  F  I  V  D  V  T  S  Q  A  Q  L  T  S  Y  Q  E  T  R  L  L  C  S  K  T  V  K  F  T  *  G  N  Q  *  M  T  K  R  T  S  L  P  H  K  E  G  *  A  S  A  K  L  Q  G  L  S  C  K  V  V  A  F  S  Q  T  I  H  L  N  L  K  N  Q  S  S  R  V  T  W  V  D  Q  *  R  N  T  L  G  R  L  *  W  K  R  T  L  L  T  *  L  I  Q  K  D  G  R  L  Q  T  G  T  M  H  *  A  L  C  I  S  G  N  I  A  T  E  E  L  D  L  E  R  A  P  E  L  N  G  L  D  I  K  A  Q  *  V  R  I  S  R  *  I  T  Q  L  N  P  S  Y  K  A  K  L  G  *  R  I  S  M  F  K  F  V  L  A  F  P  A  N  H  L  L  R  H  R  H  H  L  H  H  V  K  L  I  F  L  P  F  N  S  M  S  N  Y  D  R  L  H  L  S  Y  L  N  L  V  C  S  *  S  *  S  C  T  S  S  E  H  S  T  K  K  F  S  K  T  Y  L  R  T  Y  V  R  I  L  *  Q  R  I  D  I  Y  *  I  I  V  M  N  T  I  H  Y  L  I  F  T  C  A  R  *  I  H  I  R  T  T  N  E  G  I  R  G  R  K  L  *  K  K  K  K  C  L  V  H  L  K  E  *  Y  K  *  I  V  *  F  V  S  N  F  Q  L  Y   </first_frame>
            <second_frame>  N  T  I  R  C  S  C  M  D  *  T  R  *  *  K  N  V  G  *  R  R  R  Q  R  H  E  V  F  Y  K  H  D  S  C  K  R  W  *  W  *  F  *  F  H  K  *  S  L  K  G  S  S  T  K  L  *  R  K  :  V  L  Y  L  Y  *  R  R  S  L  *  R  K  C  S  C  V  T  S  Q  S  Y  I  C  W  R  W  I  P  K  E  Y  Y  L  R  Q  Q  K  H  C  G  *  P  H  N  I  P  N  R  N  S  C :   Y  F  R  R  W  I  F  C  I  *  D  G  I  P  *  H  S  G  S  *  K  I  R  S  S  G  S  T  S  P  S  *  S  C  N  I  Y  E  L  S  Y  G  G  S  P  K  C  D  L  C  S  G  L  S  T  I  L  S  W  M  L  H  H  R  H  S  *  H  H  I  R  K  R  G  C  C  V  P  K  L  S  N  L  P  K  E  T  N  E  *  P  K  E  R  H  Y  R  T  R  K  V  E  Q  A  P  N  Y  R  D  C  L  A  K  L  *  H  F  R  R  R  Y  T  *  T  *  K  I  K  V  Q  E  L  L  G  S  T  N  E  G  I  L  *  D  D  C  N  G  N  G  H  Y  *  R  N  *  S  R  R  M  G  G  Y  K  R  G  L  C  I  K  H  S  V  F  R  G  I  *  Q  Q  R  S  W  I  W  N  G  L  Q  S  *  M  G  W  I  S  R  H  N  K  *  G  Y  R  V  E  L  H  S  *  I  L  L  T  R  P  N  L  V  E  G  S  R  C  S  S  S  F  *  P  F  Q  L  I  I  F  F  V  I  V  I  I  F  I  M  S  N  *  S  F  F  L  L  I  P  C  Q  I  T  I  V  F  I  L  V  I  S  I  *  S  V  L  N  H  D  L  V  Q  V  V  N  I  L  R  K  N  F  L  R  R  I  Y  V  R  M  Y  V  Y  Y  N  K  E  S  I  Y  T  E  *  L  *  *  I  L  F  I  I  *  F  S  L  V  R  G  R  F  I  *  G  L  Q  M  K  A  L  E  E  E  N  Y  K  K  K  K  S  V  *  C  I  *  R  N  N  I  N  R  S  F  N  L  S  R  I  F  N  Y  T  </second_frame>
            <third_frame>   T  R  L  G  V  P  A  W  I  K  Q  G  D  R  R  M  L  D  E  E  E  G  K  D  M  K  S  F  I  N  M  T  V  A  K  D  G  S  G  N  F  S  S  I  N  E  A  L  K  A  V  P  Q  S  F  E  G  R :   F  F  I  Y  I  K  E  G  V  Y  E  E  N  V  V  V  S  Q  V  N  L  T  F  V  G  D  G  S  Q  K  S  I  I  S  G  S  K  N  I  V  D  D  L  T  T  Y  Q  T  A  T  V   : A  I  S  G  D  G  F  F  A  Y  K  M  G  F  R  N  T  A  G  P  E  K  L  E  A  V  A  L  R  V  Q  A  D  H  A  I  F  M  N  C  R  M  E  G  H  Q  S  V  I  Y  A  Q  A  Y  R  Q  F  Y  R  G  C  Y  I  T  G  T  V  D  I  I  S  G  N  A  A  A  V  F  Q  N  C  Q  I  Y  L  R  K  P  M  N  D  Q  K  N  V  I  T  A  Q  G  R  L  S  K  R  Q  T  T  G  T  V  L  Q  S  C  S  I  F  A  D  D  T  L  E  P  E  K  S  K  F  K  S  Y  L  G  R  P  M  K  E  Y  S  R  T  I  V  M  E  T  D  I  T  D  V  I  D  P  E  G  W  E  A  T  N  G  D  Y  A  L  S  T  L  Y  F  G  E  Y  S  N  R  G  A  G  S  G  T  G  S  R  V  K  W  A  G  Y  Q  G  T  I  S  K  D  I  A  L  N  Y  T  V  E  S  F  L  Q  G  Q  T  W  L  K  D  L  D  V  Q  V  R  F  S  L  S  S  *  S  S  S  S  S  S  S  S  S  S  S  C  Q  I  N  L  S  S  F  *  F  H  V  K  L  R  S  S  S  S  *  L  S  Q  F  S  L  F  L  I  M  I  L  Y  K  *  *  T  F  Y  E  K  I  F  *  D  V  F  T  Y  V  C  T  Y  I  I  T  K  N  R  Y  I  L  N  N  C  N  E  Y  Y  S  L  S  N  F  H  L  C  A  V  D  S  Y  K  D  Y  K  *  R  H  *  R  K  K  I  I  K  K  K  K  V  F  S  A  F  E  G  I  I  *  I  D  R  L  I  C  L  E  F  S  I  I  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0017H09.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24199" stop="24027"/>
                    <exon start="23937" stop="23783"/>
                    <exon start="23508" stop="22811"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1023</number_coding_nucleotides>
                  <number_encoded_amino_acids>341</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRLGVPAWIKQGDRRMLDEEEGKDMKSFINMTVAKDGSGNFSSINEALKAVPQSFEGRFFIYIKEGVYEENVVVSQVNLTFVGDGSQKSIISGSKNIVDDLTTYQTATVAISGDGFFAYKMGFRNTAGPEKLEAVALRVQADHAIFMNCRMEGHQSVIYAQAYRQFYRGCYITGTVDIISGNAAAVFQNCQIYLRKPMNDQKNVITAQGRLSKRQTTGTVLQSCSIFADDTLEPEKSKFKSYLGRPMKEYSRTIVMETDITDVIDPEGWEATNGDYALSTLYFGEYSNRGAGSGTGSRVKWAGYQGTISKDIALNYTVESFLQGQTWLKDLDVQVRFSLSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="25311" PGL_stop="24265"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25311" e_stop="24265"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="25311" e_stop="24265" e_length="1047"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25311" stop="24748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25311" stop="24916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25303" stop="24882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25292" stop="24884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25291" stop="24839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25288" stop="25021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25288" stop="25046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25287" stop="24754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25278" stop="24977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25277" stop="24883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25276" stop="24619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25276" stop="24765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25273" stop="24748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24728" stop="24265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364418" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAGTTCCACTAAATAAGAGGGAATAAACAGAGAAATAAATAAAACAAAAAAAAAAGAACAAATAAATAAACTAAGCACCAAATAAAGCATCATCTTGGTGTAACATCTCTGCCTTGGTTTGGGATCCAGGGCAGAGATCTTTTTAATCTCTGTCTCTATTCCGGACTCGAATCCAAAATGGCGTTTCAAGATTTTGATCAAATTTCAGAGCGGAGGAAGCTCGAGAGACAGCAAAAGATGAAGAAGAGGATAATGATTGGTGTTGTATTGCTACTCCTCATTCTCATTGCTGTTGCTGCTTCTGTTGTCTATTTTGTTGTGTTTAAAAACAAGAGCGGTGATTCCTCCTCCGCTAGTAAATCTAATAAGAACGCGTCAACGCCTCCTCCAAAAGAAACTGAAACACCGACTCCTAAGGCTGATGCATCACCTCCTCCACCTGAGGCTGCTGATACAGCACCACCTTCTGATGAAGGTGGTGCTGCTGCCCCTCCACCAAATGTGGACGGAGCTGCAGCACCGGCTGGGGATGCAGCACCTGCTGCACCATCACCCGAGGGTGGCAACGCAGCAGCAGCCCCAGCCCCCTCACCACAAGGTGAAGGAGCTATGGGAGCAATATGCGCGGGAACAGATTTCAGTCAAAGTTGTGGGGACATTCTATCAAAAGTTGTACAAGCAAATGCCTCTGGTGCTCAACCTACAGATCTTCTCAAGGCAACCGTATCTGCAGCTATCGATGAGATTGCTGCCGGTATTGTAGAACTAGACAAAATCAACAAGGATATCCCAGAGAAGGTCGTTGCTCATGACGATTGTATGGCCCTCCTTGGTTATGCCAAAAAAGACTTGAACGCTTCGATTTACTTGCTTGAAGGTGGCGTTAATGATGTCGCCACAACAACCGCTGAACTTAATAACAAGTTAAGTGCAGCTTTGACATTCCAAAGCATGTGTGTGGATGGATACCCTGAAGCAGACCAGTCCACGGTGCAAAGCGCCTTGAAGAAAACAGAGGAACACACCACCAATTCTCTTGTTGTTG</gDNA_template>
            <first_frame> S  S  S  T  K  *  E  G  I  N  R  E  I  N  K  T  K  K  K  E  Q  I  N  K  L  S  T  K  *  S  I  I  L  V  *  H  L  C  L  G  L  G  S  R  A  E  I  F  L  I  S  V  S  I  P  D  S  N  P  K  W  R  F  K  I  L  I  K  F  Q  S  G  G  S  S  R  D  S  K  R  *  R  R  G  *  *  L  V  L  Y  C  Y  S  S  F  S  L  L  L  L  L  L  L  S  I  L  L  C  L  K  T  R  A  V  I  P  P  P  L  V  N  L  I  R  T  R  Q  R  L  L  Q  K  K  L  K  H  R  L  L  R  L  M  H  H  L  L  H  L  R  L  L  I  Q  H  H  L  L  M  K  V  V  L  L  P  L  H  Q  M  W  T  E  L  Q  H  R  L  G  M  Q  H  L  L  H  H  H  P  R  V  A  T  Q  Q  Q  P  Q  P  P  H  H  K  V  K  E  L  W  E  Q  Y  A  R  E  Q  I  S  V  K  V  V  G  T  F  Y  Q  K  L  Y  K  Q  M  P  L  V  L  N  L  Q  I  F  S  R  Q  P  Y  L  Q  L  S  M  R  L  L  P  V  L  *  N  *  T  K  S  T  R  I  S  Q  R  R  S  L  L  M  T  I  V  W  P  S  L  V  M  P  K  K  T  *  T  L  R  F  T  C  L  K  V  A  L  M  M  S  P  Q  Q  P  L  N  L  I  T  S  *  V  Q  L  *  H  S  K  A  C  V  W  M  D  T  L  K  Q  T  S  P  R  C  K  A  P  *  R  K  Q  R  N  T  P  P  I  L  L  L  L </first_frame>
            <second_frame>  Q  V  P  L  N  K  R  E  *  T  E  K  *  I  K  Q  K  K  K  N  K  *  I  N  *  A  P  N  K  A  S  S  W  C  N  I  S  A  L  V  W  D  P  G  Q  R  S  F  *  S  L  S  L  F  R  T  R  I  Q  N  G  V  S  R  F  *  S  N  F  R  A  E  E  A  R  E  T  A  K  D  E  E  E  D  N  D  W  C  C  I  A  T  P  H  S  H  C  C  C  C  F  C  C  L  F  C  C  V  *  K  Q  E  R  *  F  L  L  R  *  *  I  *  *  E  R  V  N  A  S  S  K  R  N  *  N  T  D  S  *  G  *  C  I  T  S  S  T  *  G  C  *  Y  S  T  T  F  *  *  R  W  C  C  C  P  S  T  K  C  G  R  S  C  S  T  G  W  G  C  S  T  C  C  T  I  T  R  G  W  Q  R  S  S  S  P  S  P  L  T  T  R  *  R  S  Y  G  S  N  M  R  G  N  R  F  Q  S  K  L  W  G  H  S  I  K  S  C  T  S  K  C  L  W  C  S  T  Y  R  S  S  Q  G  N  R  I  C  S  Y  R  *  D  C  C  R  Y  C  R  T  R  Q  N  Q  Q  G  Y  P  R  E  G  R  C  S  *  R  L  Y  G  P  P  W  L  C  Q  K  R  L  E  R  F  D  L  L  A  *  R  W  R  *  *  C  R  H  N  N  R  *  T  *  *  Q  V  K  C  S  F  D  I  P  K  H  V  C  G  W  I  P  *  S  R  P  V  H  G  A  K  R  L  E  E  N  R  G  T  H  H  Q  F  S  C  C   </second_frame>
            <third_frame>   K  F  H  *  I  R  G  N  K  Q  R  N  K  *  N  K  K  K  R  T  N  K  *  T  K  H  Q  I  K  H  H  L  G  V  T  S  L  P  W  F  G  I  Q  G  R  D  L  F  N  L  C  L  Y  S  G  L  E  S  K  M  A  F  Q  D  F  D  Q  I  S  E  R  R  K  L  E  R  Q  Q  K  M  K  K  R  I  M  I  G  V  V  L  L  L  L  I  L  I  A  V  A  A  S  V  V  Y  F  V  V  F  K  N  K  S  G  D  S  S  S  A  S  K  S  N  K  N  A  S  T  P  P  P  K  E  T  E  T  P  T  P  K  A  D  A  S  P  P  P  P  E  A  A  D  T  A  P  P  S  D  E  G  G  A  A  A  P  P  P  N  V  D  G  A  A  A  P  A  G  D  A  A  P  A  A  P  S  P  E  G  G  N  A  A  A  A  P  A  P  S  P  Q  G  E  G  A  M  G  A  I  C  A  G  T  D  F  S  Q  S  C  G  D  I  L  S  K  V  V  Q  A  N  A  S  G  A  Q  P  T  D  L  L  K  A  T  V  S  A  A  I  D  E  I  A  A  G  I  V  E  L  D  K  I  N  K  D  I  P  E  K  V  V  A  H  D  D  C  M  A  L  L  G  Y  A  K  K  D  L  N  A  S  I  Y  L  L  E  G  G  V  N  D  V  A  T  T  T  A  E  L  N  N  K  L  S  A  A  L  T  F  Q  S  M  C  V  D  G  Y  P  E  A  D  Q  S  T  V  Q  S  A  L  K  K  T  E  E  H  T  T  N  S  L  V  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0017H09.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25240" stop="24266"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>975</number_coding_nucleotides>
                  <number_encoded_amino_acids>325</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKHQIKHHLGVTSLPWFGIQGRDLFNLCLYSGLESKMAFQDFDQISERRKLERQQKMKKRIMIGVVLLLLILIAVAASVVYFVVFKNKSGDSSSASKSNKNASTPPPKETETPTPKADASPPPPEAADTAPPSDEGGAAAPPPNVDGAAAPAGDAAPAAPSPEGGNAAAAPAPSPQGEGAMGAICAGTDFSQSCGDILSKVVQANASGAQPTDLLKATVSAAIDEIAAGIVELDKINKDIPEKVVAHDDCMALLGYAKKDLNASIYLLEGGVNDVATTTAELNNKLSAALTFQSMCVDGYPEADQSTVQSALKKTEEHTTNSLVV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="53478" PGL_stop="53072"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53478" e_stop="53072"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="53478" e_stop="53072" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53478" stop="53072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATAATTGCAGACTTAAAGGAGTACAAAATCACAAAGATTTTTGTCTCCACAAGAAACACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTATGAAAATCAGAAATTACTGGTTGTAATAAATAATTCAGAAACACGAAGTAACTAAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGTAAAAAATAATTGAATCTGTAAAACTTACCAGAATCTGAAATACTCTTTTAGATAATTTAGGAAGAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCAAGTATCCGAGGTTTGATTTGGAATATAACCTCTCAGGGTAAAATGATCTTAATTAGTAGAGTATAGATACCAAAACTCTAATGTCAGCG</gDNA_template>
            <first_frame> L  *  L  Q  T  *  R  S  T  K  S  Q  R  F  L  S  P  Q  E  T  Q  I  *  I  I  S  L  R  L  L  P  I  C  V  M  K  I  R  N  Y  W  L  *  *  I  I  Q  K  H  E  V  T  K  I  F  R  T  S  K  *  D  E  Q  K  F  I  C  K  K  *  L  N  L  *  N  L  P  E  S  E  I  L  F  *  I  I  *  E  E  N  Q  V  H  *  I  H  S  V  P  L  R  K  L  F  P  S  S  I  R  G  L  I  W  N  I  T  S  Q  G  K  M  I  L  I  S  R  V  *  I  P  K  L  *  C  Q   </first_frame>
            <second_frame>  Y  N  C  R  L  K  G  V  Q  N  H  K  D  F  C  L  H  K  K  H  R  F  K  *  F  P  *  D  C  C  Q  S  V  L  *  K  S  E  I  T  G  C  N  K  *  F  R  N  T  K  *  L  R  F  L  E  P  V  N  K  M  N  R  N  L  F  V  K  N  N  *  I  C  K  T  Y  Q  N  L  K  Y  S  F  R  *  F  R  K  K  I  K  S  T  E  F  T  V  S  P  *  G  N  Y  S  P  Q  V  S  E  V  *  F  G  I  *  P  L  R  V  K  *  S  *  L  V  E  Y  R  Y  Q  N  S  N  V  S  </second_frame>
            <third_frame>   I  I  A  D  L  K  E  Y  K  I  T  K  I  F  V  S  T  R  N  T  D  L  N  N  F  L  K  I  V  A  N  L  C  Y  E  N  Q  K  L  L  V  V  I  N  N  S  E  T  R  S  N  *  D  F  *  N  Q  *  I  R  *  T  E  I  Y  L  *  K  I  I  E  S  V  K  L  T  R  I  *  N  T  L  L  D  N  L  G  R  K  S  S  P  L  N  S  Q  C  P  L  K  E  I  I  P  L  K  Y  P  R  F  D  L  E  Y  N  L  S  G  *  N  D  L  N  *  *  S  I  D  T  K  T  L  M  S  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0017H09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="53928" PGL_stop="54322"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53928" e_stop="54322"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="53928" e_stop="54322" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53928" stop="54322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53932" stop="54294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAGTAAAACTGTTGGATCACAAATGCAGGAACTTCAACTTCTTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATTAAGATTTTCAAGTGGCTGTAATGATCGAGAAGTTGCCTCCTTCGTGGAATAATATCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGAAAGATAACAGAAATGCCGAAAAGAAGTCTTGTAAGAGTTCAATAATCATTGGAGTTAATATTGTTGAAAAATCTCCTACCAAAGACAAAAAGAGAAAGAAGTCTAACGGGCAGAAGTTAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</gDNA_template>
            <first_frame> D  S  K  T  V  G  S  Q  M  Q  E  L  Q  L  L  L  H  D  L  I  A  E  D  M  V  V  N  *  D  F  Q  V  A  V  M  I  E  K  L  P  P  S  W  N  N  I  K  N  Y  L  K  H  K  R  K  E  M  K  L  E  D  L  V  I  R  L  K  I  E  K  D  N  R  N  A  E  K  K  S  C  K  S  S  I  I  I  G  V  N  I  V  E  K  S  P  T  K  D  K  K  R  K  K  S  N  G  Q  K  L  E  Q  A  K  K  K  F  K  G  N  C  Y  N  C  G  K  A  G  H  R  S  S   </first_frame>
            <second_frame>  I  V  K  L  L  D  H  K  C  R  N  F  N  F  F  S  M  I  *  L  L  K  I  W  *  *  I  K  I  F  K  W  L  *  *  S  R  S  C  L  L  R  G  I  I  S  R  I  I  *  S  T  S  V  K  K  *  S  L  K  I  L  *  F  V  S  R  L  R  K  I  T  E  M  P  K  R  S  L  V  R  V  Q  *  S  L  E  L  I  L  L  K  N  L  L  P  K  T  K  R  E  R  S  L  T  G  R  S  *  N  R  P  R  R  N  S  K  A  T  V  I  I  V  A  R  L  V  I  D  L  L  </second_frame>
            <third_frame>   *  *  N  C  W  I  T  N  A  G  T  S  T  S  S  P  *  S  D  C  *  R  Y  G  S  K  L  R  F  S  S  G  C  N  D  R  E  V  A  S  F  V  E  *  Y  Q  E  L  S  K  A  Q  A  *  R  N  E  A  *  R  S  C  D  S  S  Q  D  *  E  R  *  Q  K  C  R  K  E  V  L  *  E  F  N  N  H  W  S  *  Y  C  *  K  I  S  Y  Q  R  Q  K  E  K  E  V  *  R  A  E  V  R  T  G  Q  E  E  I  Q  R  Q  L  L  *  L  W  Q  G  W  S  *  I  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0017H09.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54012" stop="54320"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFQVAVMIEKLPPSWNNIKNYLKHKRKEMKLEDLVIRLKIEKDNRNAEKKSCKSSIIIGVNIVEKSPTKDKKRKKSNGQKLEQAKKKFKGNCYNCGKAGHRSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="57727" PGL_stop="58434"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57727" e_stop="58434"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="57727" e_stop="58434" e_length="708"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57727" stop="58434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGGGTCTTCATTACGAAATACTTCAACTTTTGGAATTTGGGTACTGGGATCACTTCTCTGATCTTCGCGACGAACCTGCAGGACGGACCGTCATATCCATGACGGACCGTCAGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGTTGCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTCGCTCAAAATCTCCGCATTCAGCTTTAGACAGATTTCCTGCAAAACAAAGAAAAACTTATATCAAAATTAGCACAAAAAGGGCTTTCGGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATTCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGACTAATCCCATCAAATCTATGCATGCTATCACTATTAGGCTTGACTTTTGTGGGATTCGAACATGACACAGATTCACCATGCACTAACGCCTATCCTCTTCAATTGCTCACCGAGGTGCTAACAATTCCGGTATTGCAACTAGTGTCCTCGCTTTAGAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</gDNA_template>
            <first_frame> R  G  S  S  L  R  N  T  S  T  F  G  I  W  V  L  G  S  L  L  *  S  S  R  R  T  C  R  T  D  R  H  I  H  D  G  P  S  V  I  P  H  L  V  R  L  P  H  L  P  S  A  A  S  L  R  C  H  L  R  T  V  T  S  T  T  D  R  H  K  L  R  R  W  S  L  L  H  F  S  L  K  I  S  A  F  S  F  R  Q  I  S  C  K  T  K  K  N  L  Y  Q  N  *  H  K  K  G  F  R  T  H  *  T  *  G  K  S  I  N  Y  T  V  K  P  R  Y  I  N  T  L  N  L  N  S  L  F  V  L  K  R  R  T  M  T  H  Y  T  I  F  V  Q  *  Y  S  C  F  I  L  C  N  H  L  A  I  N  P  D  *  S  H  Q  I  Y  A  C  Y  H  Y  *  A  *  L  L  W  D  S  N  M  T  Q  I  H  H  A  L  T  P  I  L  F  N  C  S  P  R  C  *  Q  F  R  Y  C  N  *  C  P  R  F  R  T  K  S  S  F  F  T  Q  *  F  Q  F  E  Y  K  D  Y </first_frame>
            <second_frame>  E  G  L  H  Y  E  I  L  Q  L  L  E  F  G  Y  W  D  H  F  S  D  L  R  D  E  P  A  G  R  T  V  I  S  M  T  D  R  Q  *  S  H  T  W  S  D  F  P  I  F  L  Q  Q  L  L  Y  V  A  T  Y  G  P  S  Q  A  R  R  T  V  I  S  S  V  G  G  L  F  C  I  F  R  S  K  S  P  H  S  A  L  D  R  F  P  A  K  Q  R  K  T  Y  I  K  I  S  T  K  R  A  F  G  H  T  K  L  K  E  K  V  L  I  I  P  *  N  H  G  I  S  T  P  S  T  *  I  R  C  L  S  S  S  D  A  L  *  L  T  T  Q  S  L  Y  N  S  I  H  V  L  S  F  A  I  I  W  L  S  I  P  T  N  P  I  K  S  M  H  A  I  T  I  R  L  D  F  C  G  I  R  T  *  H  R  F  T  M  H  *  R  L  S  S  S  I  A  H  R  G  A  N  N  S  G  I  A  T  S  V  L  A  L  E  Q  N  P  H  F  S  H  N  D  F  S  L  S  I  R  I   </second_frame>
            <third_frame>   R  V  F  I  T  K  Y  F  N  F  W  N  L  G  T  G  I  T  S  L  I  F  A  T  N  L  Q  D  G  P  S  Y  P  *  R  T  V  S  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  F  S  T  L  P  P  T  D  R  H  K  H  D  G  P  S  *  A  P  *  V  V  S  S  A  F  F  A  Q  N  L  R  I  Q  L  *  T  D  F  L  Q  N  K  E  K  L  I  S  K  L  A  Q  K  G  L  S  D  T  L  N  L  R  K  K  Y  *  L  Y  R  E  T  T  V  Y  Q  H  P  Q  L  K  F  V  V  C  P  Q  A  T  H  Y  D  S  L  H  N  L  C  T  I  V  F  M  F  Y  P  L  Q  S  F  G  Y  Q  S  R  L  I  P  S  N  L  C  M  L  S  L  L  G  L  T  F  V  G  F  E  H  D  T  D  S  P  C  T  N  A  Y  P  L  Q  L  L  T  E  V  L  T  I  P  V  L  Q  L  V  S  S  L  *  N  K  I  L  I  F  H  T  M  I  S  V  *  V  *  G  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0017H09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58083" stop="58382"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYRETTVYQHPQLKFVVCPQATHYDSLHNLCTIVFMFYPLQSFGYQSRLIPSNLCMLSLLGLTFVGFEHDTDSPCTNAYPLQLLTEVLTIPVLQLVSSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0017H09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57845" stop="58093"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHTWSDFPIFLQQLLYVATYGPSQARRTVISSVGGLFCIFRSKSPHSALDRFPAKQRKTYIKISTKRAFGHTKLKEKVLIIP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0017H09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57790" stop="58035"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSRRTCRTDRHIHDGPSVIPHLVRLPHLPSAASLRCHLRTVTSTTDRHKLRRWSLLHFSLKISAFSFRQISCKTKKNLYQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="63649" PGL_stop="63035"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63649" e_stop="63035"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="63649" e_stop="63035" e_length="615"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63649" stop="63035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGGATTTAGTGCTTCTATTCAATTCCAGATTGCGCTTGTTTCCAGGCAAACTCAAGTCCAAATGGACTGGTCCTTACACGGTTACCCAACTATTCCCTCATGGAGCAGTCGAGTTGGAAACCAAGGAGGGTGTGCTGTTCAAGGTGAATGGACAGCGCATAAAAATCTATCTAGGGCATGCTGAATCGGCGAATGAAGTGATCGAGGCATACCATCTTGATGAAGTCTGAGTAATCAAGTGGCCCCAGTCGTGCCGCGACGTTAAATCTGGCGCTTGTTGGGAGGCAACCCAATACTTGTCGTCTTTTTAATAATGGTAGCATTTTTCTATAAATGGGTTTTAAATTTGCAGGCACATCACCACGAAATTCTGCAGAAAACTACTCCGCAGTAGCCACTGACGGATACAACGACGGACCATCGCGTTTGAAACGGACCGTTGTATGCACCGTCACACCAGGTACGTATTTCTGTCATTTTTGAAACTAGGGCACACACGACGGACACCACTACGGGGCGTCGCATGTGCGACGGACCGTCGTCGGGGTACCGTCGCGCGATTAATGAAATTAACCCGACCCGACCCGGCTGGATCCCTTTTCCAAAATTTGACC</gDNA_template>
            <first_frame> G  D  L  V  L  L  F  N  S  R  L  R  L  F  P  G  K  L  K  S  K  W  T  G  P  Y  T  V  T  Q  L  F  P  H  G  A  V  E  L  E  T  K  E  G  V  L  F  K  V  N  G  Q  R  I  K  I  Y  L  G  H  A  E  S  A  N  E  V  I  E  A  Y  H  L  D  E  V  *  V  I  K  W  P  Q  S  C  R  D  V  K  S  G  A  C  W  E  A  T  Q  Y  L  S  S  F  *  *  W  *  H  F  S  I  N  G  F  *  I  C  R  H  I  T  T  K  F  C  R  K  L  L  R  S  S  H  *  R  I  Q  R  R  T  I  A  F  E  T  D  R  C  M  H  R  H  T  R  Y  V  F  L  S  F  L  K  L  G  H  T  R  R  T  P  L  R  G  V  A  C  A  T  D  R  R  R  G  T  V  A  R  L  M  K  L  T  R  P  D  P  A  G  S  L  F  Q  N  L  T </first_frame>
            <second_frame>  G  I  *  C  F  Y  S  I  P  D  C  A  C  F  Q  A  N  S  S  P  N  G  L  V  L  T  R  L  P  N  Y  S  L  M  E  Q  S  S  W  K  P  R  R  V  C  C  S  R  *  M  D  S  A  *  K  S  I  *  G  M  L  N  R  R  M  K  *  S  R  H  T  I  L  M  K  S  E  *  S  S  G  P  S  R  A  A  T  L  N  L  A  L  V  G  R  Q  P  N  T  C  R  L  F  N  N  G  S  I  F  L  *  M  G  F  K  F  A  G  T  S  P  R  N  S  A  E  N  Y  S  A  V  A  T  D  G  Y  N  D  G  P  S  R  L  K  R  T  V  V  C  T  V  T  P  G  T  Y  F  C  H  F  *  N  *  G  T  H  D  G  H  H  Y  G  A  S  H  V  R  R  T  V  V  G  V  P  S  R  D  *  *  N  *  P  D  P  T  R  L  D  P  F  S  K  I  *   </second_frame>
            <third_frame>   G  F  S  A  S  I  Q  F  Q  I  A  L  V  S  R  Q  T  Q  V  Q  M  D  W  S  L  H  G  Y  P  T  I  P  S  W  S  S  R  V  G  N  Q  G  G  C  A  V  Q  G  E  W  T  A  H  K  N  L  S  R  A  C  *  I  G  E  *  S  D  R  G  I  P  S  *  *  S  L  S  N  Q  V  A  P  V  V  P  R  R  *  I  W  R  L  L  G  G  N  P  I  L  V  V  F  L  I  M  V  A  F  F  Y  K  W  V  L  N  L  Q  A  H  H  H  E  I  L  Q  K  T  T  P  Q  *  P  L  T  D  T  T  T  D  H  R  V  *  N  G  P  L  Y  A  P  S  H  Q  V  R  I  S  V  I  F  E  T  R  A  H  T  T  D  T  T  T  G  R  R  M  C  D  G  P  S  S  G  Y  R  R  A  I  N  E  I  N  P  T  R  P  G  W  I  P  F  P  K  F  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0017H09.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63649" stop="63419"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDLVLLFNSRLRLFPGKLKSKWTGPYTVTQLFPHGAVELETKEGVLFKVNGQRIKIYLGHAESANEVIEAYHLDEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0017H09.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63247" stop="63035"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIQRRTIAFETDRCMHRHTRYVFLSFLKLGHTRRTPLRGVACATDRRRGTVARLMKLTRPDPAGSLFQNLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="64942" PGL_stop="65674"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64942" e_stop="65674"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="64942" e_stop="65674" e_length="733"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64942" stop="65674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577717" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTATGACTCTAGTACCTAGCAAATAGGAGCGAAATTTCTCAAAAGCAAAGACTACTGCGAGGAGTTCTTGCTCAGTCACTGTGTAGTTCTTCTGGGCTTCATTTAGGGCTTTACTAGCATAGTAAATTGGGTGAAGGATTTTGTTTCTTCTCTGTCCCAATACTACACCAAGAGCCACCCCACTAGAATCGCACATTACCTCAAATGGACTGTTCCAATCCGGAGAAATAATGATAGGTGCAGACACTAACTTCTCTTTTAGCTCACTGAATGCTTTAAGACGGGACTCATCAAAACAAAATTTACATTCTTTCTCAGTAATTTGCACAATGGGTGTGCAATCTTTGAGAAGTCTTTGATGAATCTCCGATAAAAACCTGCATGCCCAAGAAAGCTTCTCATACCTTTCACAGAGATCGGCGGGGGAAGTCTCTCTATTACCTCAACTTTAGCTCGATCAACCTCTATACCCTTTTCTGAAATGCGATGACCCAACACAATACCCTCTTTCACCATGAAATGACACTTTTCCCAGTTTAGTACTAGATTGCAGTCTTCACATCTCTTAAGAACCTCAGATAAATTGTTCAAGCATCGCTCAAATGAATCACCAACCACAGAAAAATCATCCATAAAAACCTCTATAGTATCCTCCACCATATCAGAAAATATTGACATCATACATCTCTGAAAGGTTGCGGGTGCATTGCACAACCCAAACGGCATTCTTC</gDNA_template>
            <first_frame> H  Y  D  S  S  T  *  Q  I  G  A  K  F  L  K  S  K  D  Y  C  E  E  F  L  L  S  H  C  V  V  L  L  G  F  I  *  G  F  T  S  I  V  N  W  V  K  D  F  V  S  S  L  S  Q  Y  Y  T  K  S  H  P  T  R  I  A  H  Y  L  K  W  T  V  P  I  R  R  N  N  D  R  C  R  H  *  L  L  F  *  L  T  E  C  F  K  T  G  L  I  K  T  K  F  T  F  F  L  S  N  L  H  N  G  C  A  I  F  E  K  S  L  M  N  L  R  *  K  P  A  C  P  R  K  L  L  I  P  F  T  E  I  G  G  G  S  L  S  I  T  S  T  L  A  R  S  T  S  I  P  F  S  E  M  R  *  P  N  T  I  P  S  F  T  M  K  *  H  F  S  Q  F  S  T  R  L  Q  S  S  H  L  L  R  T  S  D  K  L  F  K  H  R  S  N  E  S  P  T  T  E  K  S  S  I  K  T  S  I  V  S  S  T  I  S  E  N  I  D  I  I  H  L  *  K  V  A  G  A  L  H  N  P  N  G  I  L  </first_frame>
            <second_frame>  T  M  T  L  V  P  S  K  *  E  R  N  F  S  K  A  K  T  T  A  R  S  S  C  S  V  T  V  *  F  F  W  A  S  F  R  A  L  L  A  *  *  I  G  *  R  I  L  F  L  L  C  P  N  T  T  P  R  A  T  P  L  E  S  H  I  T  S  N  G  L  F  Q  S  G  E  I  M  I  G  A  D  T  N  F  S  F  S  S  L  N  A  L  R  R  D  S  S  K  Q  N  L  H  S  F  S  V  I  C  T  M  G  V  Q  S  L  R  S  L  *  *  I  S  D  K  N  L  H  A  Q  E  S  F  S  Y  L  S  Q  R  S  A  G  E  V  S  L  L  P  Q  L  *  L  D  Q  P  L  Y  P  F  L  K  C  D  D  P  T  Q  Y  P  L  S  P  *  N  D  T  F  P  S  L  V  L  D  C  S  L  H  I  S  *  E  P  Q  I  N  C  S  S  I  A  Q  M  N  H  Q  P  Q  K  N  H  P  *  K  P  L  *  Y  P  P  P  Y  Q  K  I  L  T  S  Y  I  S  E  R  L  R  V  H  C  T  T  Q  T  A  F  F </second_frame>
            <third_frame>   L  *  L  *  Y  L  A  N  R  S  E  I  S  Q  K  Q  R  L  L  R  G  V  L  A  Q  S  L  C  S  S  S  G  L  H  L  G  L  Y  *  H  S  K  L  G  E  G  F  C  F  F  S  V  P  I  L  H  Q  E  P  P  H  *  N  R  T  L  P  Q  M  D  C  S  N  P  E  K  *  *  *  V  Q  T  L  T  S  L  L  A  H  *  M  L  *  D  G  T  H  Q  N  K  I  Y  I  L  S  Q  *  F  A  Q  W  V  C  N  L  *  E  V  F  D  E  S  P  I  K  T  C  M  P  K  K  A  S  H  T  F  H  R  D  R  R  G  K  S  L  Y  Y  L  N  F  S  S  I  N  L  Y  T  L  F  *  N  A  M  T  Q  H  N  T  L  F  H  H  E  M  T  L  F  P  V  *  Y  *  I  A  V  F  T  S  L  K  N  L  R  *  I  V  Q  A  S  L  K  *  I  T  N  H  R  K  I  I  H  K  N  L  Y  S  I  L  H  H  I  R  K  Y  *  H  H  T  S  L  K  G  C  G  C  I  A  Q  P  K  R  H  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0017H09.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65078" stop="65302"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RILFLLCPNTTPRATPLESHITSNGLFQSGEIMIGADTNFSFSSLNALRRDSSKQNLHSFSVICTMGVQSLRSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="83296" PGL_stop="82709"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83296" e_stop="82709"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="83296" e_stop="82709" e_length="588"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83296" stop="82709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTGTATCATCCGGGGAAGGCCAATGTTGTGGCCGATGCTTTGAGTAGGAAGACTCATAGCATGGGGAGTCTTGCATCTCTTAGTATTGAGGAGAGACCATTGGCTAGAGATGTTCAATTGTTAGCTAACAGTCTTGTCCGATTGCAGATCTCAGAGGAGAGTGATGGGATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCAAGCAGATCCATGCACACTAGTTTAATGATGAAAAGTTATGTCTCATTCGAGACAAAGTATTGAGAGGGGAAACTAAGGAGGTTGTCCTTGACTCTGATGGTGTTTTGAGGATCAGAGGCAGGATTTGTGTGCCCAAGACAGGTGATTTGATTAGATTAATCCTTGAGGAGGCCCATTGTTCTCGGTATTCCATCCATCCGGGAGCAACGAATATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGAATGAAGAGAGATATTACAGACTTTGTTTCTAGGTGTTTGACTTGCCAGCAGGTCAAGTATGAGCACCAGCGGCCCGGGGGTGTATCTCAGAGGATGCCTATTCCTACTTGGAAGTGGGAGCGGATTACTA</gDNA_template>
            <first_frame> F  C  I  I  R  G  R  P  M  L  W  P  M  L  *  V  G  R  L  I  A  W  G  V  L  H  L  L  V  L  R  R  D  H  W  L  E  M  F  N  C  *  L  T  V  L  S  D  C  R  S  Q  R  R  V  M  G  *  L  L  L  L  R  L  D  L  L  *  S  S  R  S  M  H  T  S  L  M  M  K  S  Y  V  S  F  E  T  K  Y  *  E  G  K  L  R  R  L  S  L  T  L  M  V  F  *  G  S  E  A  G  F  V  C  P  R  Q  V  I  *  L  D  *  S  L  R  R  P  I  V  L  G  I  P  S  I  R  E  Q  R  I  C  I  M  I  *  V  S  I  T  G  G  V  E  *  R  E  I  L  Q  T  L  F  L  G  V  *  L  A  S  R  S  S  M  S  T  S  G  P  G  V  Y  L  R  G  C  L  F  L  L  G  S  G  S  G  L  L </first_frame>
            <second_frame>  S  V  S  S  G  E  G  Q  C  C  G  R  C  F  E  *  E  D  S  *  H  G  E  S  C  I  S  *  Y  *  G  E  T  I  G  *  R  C  S  I  V  S  *  Q  S  C  P  I  A  D  L  R  G  E  *  W  D  D  C  F  Y  *  G  S  I  F  F  S  Q  A  D  P  C  T  L  V  *  *  *  K  V  M  S  H  S  R  Q  S  I  E  R  G  N  *  G  G  C  P  *  L  *  W  C  F  E  D  Q  R  Q  D  L  C  A  Q  D  R  *  F  D  *  I  N  P  *  G  G  P  L  F  S  V  F  H  P  S  G  S  N  E  Y  V  S  *  S  E  S  A  L  L  V  V  W  N  E  E  R  Y  Y  R  L  C  F  *  V  F  D  L  P  A  G  Q  V  *  A  P  A  A  R  G  C  I  S  E  D  A  Y  S  Y  L  E  V  G  A  D  Y   </second_frame>
            <third_frame>   L  Y  H  P  G  K  A  N  V  V  A  D  A  L  S  R  K  T  H  S  M  G  S  L  A  S  L  S  I  E  E  R  P  L  A  R  D  V  Q  L  L  A  N  S  L  V  R  L  Q  I  S  E  E  S  D  G  M  I  A  F  I  E  A  R  S  S  L  V  K  Q  I  H  A  H  *  F  N  D  E  K  L  C  L  I  R  D  K  V  L  R  G  E  T  K  E  V  V  L  D  S  D  G  V  L  R  I  R  G  R  I  C  V  P  K  T  G  D  L  I  R  L  I  L  E  E  A  H  C  S  R  Y  S  I  H  P  G  A  T  N  M  Y  H  D  L  S  Q  H  Y  W  W  C  G  M  K  R  D  I  T  D  F  V  S  R  C  L  T  C  Q  Q  V  K  Y  E  H  Q  R  P  G  G  V  S  Q  R  M  P  I  P  T  W  K  W  E  R  I  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0017H09.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83069" stop="82710"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNDEKLCLIRDKVLRGETKEVVLDSDGVLRIRGRICVPKTGDLIRLILEEAHCSRYSIHPGATNMYHDLSQHYWWCGMKRDITDFVSRCLTCQQVKYEHQRPGGVSQRMPIPTWKWERIT</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0017H09.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83294" stop="83070"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYHPGKANVVADALSRKTHSMGSLASLSIEERPLARDVQLLANSLVRLQISEESDGMIAFIEARSSLVKQIHAH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="85419" PGL_stop="85845"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85419" e_stop="85845"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="85419" e_stop="85845" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85419" stop="85845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279140" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGAACCGTACGAGCTTTGACCCGGGCTATTAGAACCCTTAGATGTCTGGCCACCCTCAAATGTCGGCATAGATGCATGAATAGGTCCCCGCTGCTTAAAAGAACCACTCACTCTCTGTGATCTCGTACCTCCAGATGAGACACCATGAAACTGGCCTGATATACGGGCACTTTCAGGGTCCCCAAACTCCTCTCTCTCCATCAATTCTGCCTCTTTGGCGGCGCTCACAATGGACTTGAAAGAAGCCCCCTCCCTAGATGCCCGAAACACAGCTGACCTTATAGAGAAAGTTAATCCCTTCACAAATCTGCGGATCCTCTCTGTCTCATTTGGAATAATGGTCAACGCATGCCTAGACAACTGGCAAAAACGCGCCTCATACTCTGTAACCGATAAACCATCCTGTCTCAAACTCTCAAACCTTAA</gDNA_template>
            <first_frame> V  N  R  T  S  F  D  P  G  Y  *  N  P  *  M  S  G  H  P  Q  M  S  A  *  M  H  E  *  V  P  A  A  *  K  N  H  S  L  S  V  I  S  Y  L  Q  M  R  H  H  E  T  G  L  I  Y  G  H  F  Q  G  P  Q  T  P  L  S  P  S  I  L  P  L  W  R  R  S  Q  W  T  *  K  K  P  P  P  *  M  P  E  T  Q  L  T  L  *  R  K  L  I  P  S  Q  I  C  G  S  S  L  S  H  L  E  *  W  S  T  H  A  *  T  T  G  K  N  A  P  H  T  L  *  P  I  N  H  P  V  S  N  S  Q  T  L  </first_frame>
            <second_frame>  *  T  V  R  A  L  T  R  A  I  R  T  L  R  C  L  A  T  L  K  C  R  H  R  C  M  N  R  S  P  L  L  K  R  T  T  H  S  L  *  S  R  T  S  R  *  D  T  M  K  L  A  *  Y  T  G  T  F  R  V  P  K  L  L  S  L  H  Q  F  C  L  F  G  G  A  H  N  G  L  E  R  S  P  L  P  R  C  P  K  H  S  *  P  Y  R  E  S  *  S  L  H  K  S  A  D  P  L  C  L  I  W  N  N  G  Q  R  M  P  R  Q  L  A  K  T  R  L  I  L  C  N  R  *  T  I  L  S  Q  T  L  K  P  * </second_frame>
            <third_frame>   E  P  Y  E  L  *  P  G  L  L  E  P  L  D  V  W  P  P  S  N  V  G  I  D  A  *  I  G  P  R  C  L  K  E  P  L  T  L  C  D  L  V  P  P  D  E  T  P  *  N  W  P  D  I  R  A  L  S  G  S  P  N  S  S  L  S  I  N  S  A  S  L  A  A  L  T  M  D  L  K  E  A  P  S  L  D  A  R  N  T  A  D  L  I  E  K  V  N  P  F  T  N  L  R  I  L  S  V  S  F  G  I  M  V  N  A  C  L  D  N  W  Q  K  R  A  S  Y  S  V  T  D  K  P  S  C  L  K  L  S  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0017H09.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85568" stop="85843"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWPDIRALSGSPNSSLSINSASLAALTMDLKEAPSLDARNTADLIEKVNPFTNLRILSVSFGIMVNACLDNWQKRASYSVTDKPSCLKLSNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="86266" PGL_stop="86568"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86266" e_stop="86568"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="86266" e_stop="86568" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86266" stop="86568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577887" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGGTCTGAGCCCCCTCTCTAGTACGAGAGTCAAGTGGTGTGGTAGTCGCACCACCACCCTGAGAAAATCCCTCTAGCACACTTAACACCCTCAACAGTGTATCTTGAATCAAAGGTGTGACTACAGGATCTGAAGGAACCTGGTCCTCCCTGCCATCAATCTGAGGTTCTGTAGAGACCTCTCTAGCACGACCTCTCACTGGTGCTGCTCCACGTCCACGACCTCTAGCTACTGTCGTACTACTAGCACGGCCTCTAGCTCGAGATCTACCCCTACCCCTAGCTGGGGCCTCAACAACTGC</gDNA_template>
            <first_frame> L  G  L  S  P  L  S  S  T  R  V  K  W  C  G  S  R  T  T  T  L  R  K  S  L  *  H  T  *  H  P  Q  Q  C  I  L  N  Q  R  C  D  Y  R  I  *  R  N  L  V  L  P  A  I  N  L  R  F  C  R  D  L  S  S  T  T  S  H  W  C  C  S  T  S  T  T  S  S  Y  C  R  T  T  S  T  A  S  S  S  R  S  T  P  T  P  S  W  G  L  N  N  C </first_frame>
            <second_frame>  W  V  *  A  P  S  L  V  R  E  S  S  G  V  V  V  A  P  P  P  *  E  N  P  S  S  T  L  N  T  L  N  S  V  S  *  I  K  G  V  T  T  G  S  E  G  T  W  S  S  L  P  S  I  *  G  S  V  E  T  S  L  A  R  P  L  T  G  A  A  P  R  P  R  P  L  A  T  V  V  L  L  A  R  P  L  A  R  D  L  P  L  P  L  A  G  A  S  T  T   </second_frame>
            <third_frame>   G  S  E  P  P  L  *  Y  E  S  Q  V  V  W  *  S  H  H  H  P  E  K  I  P  L  A  H  L  T  P  S  T  V  Y  L  E  S  K  V  *  L  Q  D  L  K  E  P  G  P  P  C  H  Q  S  E  V  L  *  R  P  L  *  H  D  L  S  L  V  L  L  H  V  H  D  L  *  L  L  S  Y  Y  *  H  G  L  *  L  E  I  Y  P  Y  P  *  L  G  P  Q  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0017H09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="90826" PGL_stop="91230"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90826" e_stop="91230"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="90826" e_stop="91230" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90826" stop="91230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90826" stop="91230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90828" stop="91230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353324" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATATCGATCGAGGTTTTGTTTGTCTAGCAAGTATTGTGTAAAACGTTGCAGAGATGAGATTTCAAAGGTAACCAAAGGTCAGTGCATTACAAAAGGCTGGGGTCGTTATTGCTTCTGTTGGCGCACAGGGGCCTGCCCTCCTAAGCCTTAAATCAATCAATAACAAAATTAATGTTATGCATGGTGTGTGTGTGTGTTATCAAGAATAAAAAACACTATCAATTCTATCATTAGAATTGTAGTGATTGTGAGGAAATTGTACTTTTATCATTATGATGTTTGTATTGTATTTTCTTCTTTGGTCATGTTCCCTAGTTTTTTTAAAGTCAATTTAAATAAATTGTTTATGGTCATTGTCATTGACTAGACTACTATATGTAATATATAATTTGGGTTGCACTTA</gDNA_template>
            <first_frame> L  Y  R  S  R  F  C  L  S  S  K  Y  C  V  K  R  C  R  D  E  I  S  K  V  T  K  G  Q  C  I  T  K  G  W  G  R  Y  C  F  C  W  R  T  G  A  C  P  P  K  P  *  I  N  Q  *  Q  N  *  C  Y  A  W  C  V  C  V  L  S  R  I  K  N  T  I  N  S  I  I  R  I  V  V  I  V  R  K  L  Y  F  Y  H  Y  D  V  C  I  V  F  S  S  L  V  M  F  P  S  F  F  K  V  N  L  N  K  L  F  M  V  I  V  I  D  *  T  T  I  C  N  I  *  F  G  L  H  L </first_frame>
            <second_frame>  Y  I  D  R  G  F  V  C  L  A  S  I  V  *  N  V  A  E  M  R  F  Q  R  *  P  K  V  S  A  L  Q  K  A  G  V  V  I  A  S  V  G  A  Q  G  P  A  L  L  S  L  K  S  I  N  N  K  I  N  V  M  H  G  V  C  V  C  Y  Q  E  *  K  T  L  S  I  L  S  L  E  L  *  *  L  *  G  N  C  T  F  I  I  M  M  F  V  L  Y  F  L  L  W  S  C  S  L  V  F  L  K  S  I  *  I  N  C  L  W  S  L  S  L  T  R  L  L  Y  V  I  Y  N  L  G  C  T   </second_frame>
            <third_frame>   I  S  I  E  V  L  F  V  *  Q  V  L  C  K  T  L  Q  R  *  D  F  K  G  N  Q  R  S  V  H  Y  K  R  L  G  S  L  L  L  L  L  A  H  R  G  L  P  S  *  A  L  N  Q  S  I  T  K  L  M  L  C  M  V  C  V  C  V  I  K  N  K  K  H  Y  Q  F  Y  H  *  N  C  S  D  C  E  E  I  V  L  L  S  L  *  C  L  Y  C  I  F  F  F  G  H  V  P  *  F  F  *  S  Q  F  K  *  I  V  Y  G  H  C  H  *  L  D  Y  Y  M  *  Y  I  I  W  V  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0017H09.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91000" stop="91194"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CYAWCVCVLSRIKNTINSIIRIVVIVRKLYFYHYDVCIVFSSLVMFPSFFKVNLNKLFMVIVID*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="104392" PGL_stop="109510"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104392" e_stop="104861"/>
            <exon e_start="106995" e_stop="107606"/>
            <exon e_start="108585" e_stop="109510"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.977" e_score="0.956"/>
          <exon-intron don_prob="0.998" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="104392" e_stop="104861" e_length="470"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="104862" i_stop="106994" i_length="2133"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106995" e_stop="107606" e_length="612"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.963">
            <gDNA_intron_boundary i_start="107607" i_stop="108584" i_length="978"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="108585" e_stop="109510" e_length="926"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104392" stop="104775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104542" stop="104861"/>
              <exon start="106995" stop="107386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104553" stop="104861"/>
              <exon start="106995" stop="107238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104639" stop="104861"/>
              <exon start="106995" stop="107296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104639" stop="104861"/>
              <exon start="106995" stop="107114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107125" stop="107606"/>
              <exon start="108585" stop="108785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107187" stop="107606"/>
              <exon start="108585" stop="108610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107505" stop="107606"/>
              <exon start="108585" stop="109107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107521" stop="107606"/>
              <exon start="108585" stop="109510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108600" stop="109291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108600" stop="109039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108667" stop="109107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108667" stop="109050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108771" stop="109476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108828" stop="109476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374522" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAATAAATTTTCCACTTCCCCCCTTTCTATATATTTATTAATTAATTCATTATTATCAACCAAATAATTTTTATCCATAAGTCTCACTAGCCAAAATTAAACTACATGCATATGCATGCTCATTATTAAAAATTAATTAAGTGTAGGACTTTAATGATTATGGGTAATTTATTCTGTAAAGTACTGATTTTGGTACTTTTATGTCTAACTACTACTTGTCCTTTGATAAGCTATGCTGTTGATGACAATTTTTTTCAATCAGAATGTTTGCAAGTGCCAACATCTGAGTTTTTGGGTTCTGTTAAGTCTACCATCAACATTGTTCGTGAAGTCACTTCTTTAGTGTCAAAATTTGCTAGCTTTTTTGGCGATTTTCGACTTTCGAATGCCATTTCTGATTGTCTTGATCTCTTGGATCTCTCAGCAGATGAACTTACTTGGACTCTTACTGCTACTCAGAATCCCAAAG : GAAAAAACAACAGTACAGGTAATCTAAGTGCAGATTTGAAGAATTATTTAAGCGGAGCATTAATTAATCAAGATACATGCATCGAAGGATTCGAGGGTACAAATGGACTAGTCAAGAATTTGGTTGCGGGTAATCTCAACCAAGTCTCATCATTAGTCCGCAACATTCTTCTTATGGTCCGACCCGTCTCTAGGAAAAACGTCTTCCCCTCTGAGGCCAATGCCAAACGTGGGAAGCCGTGGCAATTCTCCCGAGAAAGAAAATTAACGTCAAATGAAGAAGATCACAACTTATTCCCTTCGTGGATTAAACGAAAAGATAGAAGGTTATTGCAAGCATCAAATTCGACTAAAGGAGTAATTACAGACGTTGTAGTAGCTCTTGACGGAACTGGTAATTTTACCCGAATTAAAGATGCAATAGACGCAGCACCACAATTGAGTACAAAAAGATTTGTGATATATATTAAGAAGGGAATTTATAAAGAGTATGTGGAGATTAGCAAGAAAAAATGGAATATTATGATGATTGGTGATGGAATTGATGTTACTATTATTTCTGGGAATAGAAATTTTATTGATGGATGGACCACTTATAGATCTGCAACCTTTG : CGGTAAAAGGTCAAGGATTTATAGCCCGAGACATAACATTTGAGAACACATCAGGACCCGAAAAGCACCAAGCAGTAGCATTTCGTTCCGACTCAGATTTATCGGTCTTGTTCCGATGCGCGGTGAGGGGTTACCAAGACACTCTCTACGCCCACTCAATGCGTCAATTCTACAGAGACTGTACAATTACTGGCACAGTCGATTTCATTTTTGGAGACGGTACAGCTATTTTTCAAAACTGTCAAATATTAGCACGAAAAGGATTGTCACAACAGAAAAACACAATCACAGCACAAGGTCGAAAAGAAATTGCTGAAACAACAGGTTTCACGATTCAATTTTGTAACATATCTGGTGAACCGGATCTATTAACTTCACTCAATTCTACGTATACGTATCTTGGAAGACCATGGAAGACGTATTCGCGAACAGTGATCATGCAATCGTACATGAGTAATGTAATTAGACCTCAAGGTTGGTTAGAATGGAACGGAAATACATCACTTGACACATTGTATTACGCAGAGTACCAAAATTATGGGCCTGGCGCCGGTTTGGGCGGTAGAGTTAATTGGCCTGGTTTTCATCTGCTCAATGATTCATCACAGGCTAGTAATTTTACCGTTGCTCAGTTCCTTTTGGGGAACTCATGGTTACCTCCTACGGGAGTTAAGTATACCGCTGGTCTAGCAGTTTAAAGTTACTGATATCTATGGACATGTAACATCATTTTTTTTTCTTGGATGCATTGGGCGATTTTTCTTTCTATTTCTATCGTTTTTACTGGTACGTCTATATAGATCAAGTATAAAATACACGTTTAATGCGTGATTAATTAAGATATTCGGACACTCTGGATGAACTATGTATTATGAGACTTAATAACTTTTGAATTTTGTGCAGAGTTTTCATCTGAAATGATTAAT</gDNA_template>
            <first_frame> T  I  N  F  P  L  P  P  F  L  Y  I  Y  *  L  I  H  Y  Y  Q  P  N  N  F  Y  P  *  V  S  L  A  K  I  K  L  H  A  Y  A  C  S  L  L  K  I  N  *  V  *  D  F  N  D  Y  G  *  F  I  L  *  S  T  D  F  G  T  F  M  S  N  Y  Y  L  S  F  D  K  L  C  C  *  *  Q  F  F  S  I  R  M  F  A  S  A  N  I  *  V  F  G  F  C  *  V  Y  H  Q  H  C  S  *  S  H  F  F  S  V  K  I  C  *  L  F  W  R  F  S  T  F  E  C  H  F  *  L  S  *  S  L  G  S  L  S  R  *  T  Y  L  D  S  Y  C  Y  S  E  S  Q  R :   K  K  Q  Q  Y  R  *  S  K  C  R  F  E  E  L  F  K  R  S  I  N  *  S  R  Y  M  H  R  R  I  R  G  Y  K  W  T  S  Q  E  F  G  C  G  *  S  Q  P  S  L  I  I  S  P  Q  H  S  S  Y  G  P  T  R  L  *  E  K  R  L  P  L  *  G  Q  C  Q  T  W  E  A  V  A  I  L  P  R  K  K  I  N  V  K  *  R  R  S  Q  L  I  P  F  V  D  *  T  K  R  *  K  V  I  A  S  I  K  F  D  *  R  S  N  Y  R  R  C  S  S  S  *  R  N  W  *  F  Y  P  N  *  R  C  N  R  R  S  T  T  I  E  Y  K  K  I  C  D  I  Y  *  E  G  N  L  *  R  V  C  G  D  *  Q  E  K  M  E  Y  Y  D  D  W  *  W  N  *  C  Y  Y  Y  F  W  E  *  K  F  Y  *  W  M  D  H  L  *  I  C  N  L  C :   G  K  R  S  R  I  Y  S  P  R  H  N  I  *  E  H  I  R  T  R  K  A  P  S  S  S  I  S  F  R  L  R  F  I  G  L  V  P  M  R  G  E  G  L  P  R  H  S  L  R  P  L  N  A  S  I  L  Q  R  L  Y  N  Y  W  H  S  R  F  H  F  W  R  R  Y  S  Y  F  S  K  L  S  N  I  S  T  K  R  I  V  T  T  E  K  H  N  H  S  T  R  S  K  R  N  C  *  N  N  R  F  H  D  S  I  L  *  H  I  W  *  T  G  S  I  N  F  T  Q  F  Y  V  Y  V  S  W  K  T  M  E  D  V  F  A  N  S  D  H  A  I  V  H  E  *  C  N  *  T  S  R  L  V  R  M  E  R  K  Y  I  T  *  H  I  V  L  R  R  V  P  K  L  W  A  W  R  R  F  G  R  *  S  *  L  A  W  F  S  S  A  Q  *  F  I  T  G  *  *  F  Y  R  C  S  V  P  F  G  E  L  M  V  T  S  Y  G  S  *  V  Y  R  W  S  S  S  L  K  L  L  I  S  M  D  M  *  H  H  F  F  F  L  D  A  L  G  D  F  S  F  Y  F  Y  R  F  Y  W  Y  V  Y  I  D  Q  V  *  N  T  R  L  M  R  D  *  L  R  Y  S  D  T  L  D  E  L  C  I  M  R  L  N  N  F  *  I  L  C  R  V  F  I  *  N  D  *  </first_frame>
            <second_frame>  Q  *  I  F  H  F  P  P  F  Y  I  F  I  N  *  F  I  I  I  N  Q  I  I  F  I  H  K  S  H  *  P  K  L  N  Y  M  H  M  H  A  H  Y  *  K  L  I  K  C  R  T  L  M  I  M  G  N  L  F  C  K  V  L  I  L  V  L  L  C  L  T  T  T  C  P  L  I  S  Y  A  V  D  D  N  F  F  Q  S  E  C  L  Q  V  P  T  S  E  F  L  G  S  V  K  S  T  I  N  I  V  R  E  V  T  S  L  V  S  K  F  A  S  F  F  G  D  F  R  L  S  N  A  I  S  D  C  L  D  L  L  D  L  S  A  D  E  L  T  W  T  L  T  A  T  Q  N  P  K   : G  K  N  N  S  T  G  N  L  S  A  D  L  K  N  Y  L  S  G  A  L  I  N  Q  D  T  C  I  E  G  F  E  G  T  N  G  L  V  K  N  L  V  A  G  N  L  N  Q  V  S  S  L  V  R  N  I  L  L  M  V  R  P  V  S  R  K  N  V  F  P  S  E  A  N  A  K  R  G  K  P  W  Q  F  S  R  E  R  K  L  T  S  N  E  E  D  H  N  L  F  P  S  W  I  K  R  K  D  R  R  L  L  Q  A  S  N  S  T  K  G  V  I  T  D  V  V  V  A  L  D  G  T  G  N  F  T  R  I  K  D  A  I  D  A  A  P  Q  L  S  T  K  R  F  V  I  Y  I  K  K  G  I  Y  K  E  Y  V  E  I  S  K  K  K  W  N  I  M  M  I  G  D  G  I  D  V  T  I  I  S  G  N  R  N  F  I  D  G  W  T  T  Y  R  S  A  T  F   : A  V  K  G  Q  G  F  I  A  R  D  I  T  F  E  N  T  S  G  P  E  K  H  Q  A  V  A  F  R  S  D  S  D  L  S  V  L  F  R  C  A  V  R  G  Y  Q  D  T  L  Y  A  H  S  M  R  Q  F  Y  R  D  C  T  I  T  G  T  V  D  F  I  F  G  D  G  T  A  I  F  Q  N  C  Q  I  L  A  R  K  G  L  S  Q  Q  K  N  T  I  T  A  Q  G  R  K  E  I  A  E  T  T  G  F  T  I  Q  F  C  N  I  S  G  E  P  D  L  L  T  S  L  N  S  T  Y  T  Y  L  G  R  P  W  K  T  Y  S  R  T  V  I  M  Q  S  Y  M  S  N  V  I  R  P  Q  G  W  L  E  W  N  G  N  T  S  L  D  T  L  Y  Y  A  E  Y  Q  N  Y  G  P  G  A  G  L  G  G  R  V  N  W  P  G  F  H  L  L  N  D  S  S  Q  A  S  N  F  T  V  A  Q  F  L  L  G  N  S  W  L  P  P  T  G  V  K  Y  T  A  G  L  A  V  *  S  Y  *  Y  L  W  T  C  N  I  I  F  F  S  W  M  H  W  A  I  F  L  S  I  S  I  V  F  T  G  T  S  I  *  I  K  Y  K  I  H  V  *  C  V  I  N  *  D  I  R  T  L  W  M  N  Y  V  L  *  D  L  I  T  F  E  F  C  A  E  F  S  S  E  M  I  N </second_frame>
            <third_frame>   N  K  F  S  T  S  P  L  S  I  Y  L  L  I  N  S  L  L  S  T  K  *  F  L  S  I  S  L  T  S  Q  N  *  T  T  C  I  C  M  L  I  I  K  N  *  L  S  V  G  L  *  *  L  W  V  I  Y  S  V  K  Y  *  F  W  Y  F  Y  V  *  L  L  L  V  L  *  *  A  M  L  L  M  T  I  F  F  N  Q  N  V  C  K  C  Q  H  L  S  F  W  V  L  L  S  L  P  S  T  L  F  V  K  S  L  L  *  C  Q  N  L  L  A  F  L  A  I  F  D  F  R  M  P  F  L  I  V  L  I  S  W  I  S  Q  Q  M  N  L  L  G  L  L  L  L  L  R  I  P  K  :  E  K  T  T  V  Q  V  I  *  V  Q  I  *  R  I  I  *  A  E  H  *  L  I  K  I  H  A  S  K  D  S  R  V  Q  M  D  *  S  R  I  W  L  R  V  I  S  T  K  S  H  H  *  S  A  T  F  F  L  W  S  D  P  S  L  G  K  T  S  S  P  L  R  P  M  P  N  V  G  S  R  G  N  S  P  E  K  E  N  *  R  Q  M  K  K  I  T  T  Y  S  L  R  G  L  N  E  K  I  E  G  Y  C  K  H  Q  I  R  L  K  E  *  L  Q  T  L  *  *  L  L  T  E  L  V  I  L  P  E  L  K  M  Q  *  T  Q  H  H  N  *  V  Q  K  D  L  *  Y  I  L  R  R  E  F  I  K  S  M  W  R  L  A  R  K  N  G  I  L  *  *  L  V  M  E  L  M  L  L  L  F  L  G  I  E  I  L  L  M  D  G  P  L  I  D  L  Q  P  L  :  R  *  K  V  K  D  L  *  P  E  T  *  H  L  R  T  H  Q  D  P  K  S  T  K  Q  *  H  F  V  P  T  Q  I  Y  R  S  C  S  D  A  R  *  G  V  T  K  T  L  S  T  P  T  Q  C  V  N  S  T  E  T  V  Q  L  L  A  Q  S  I  S  F  L  E  T  V  Q  L  F  F  K  T  V  K  Y  *  H  E  K  D  C  H  N  R  K  T  Q  S  Q  H  K  V  E  K  K  L  L  K  Q  Q  V  S  R  F  N  F  V  T  Y  L  V  N  R  I  Y  *  L  H  S  I  L  R  I  R  I  L  E  D  H  G  R  R  I  R  E  Q  *  S  C  N  R  T  *  V  M  *  L  D  L  K  V  G  *  N  G  T  E  I  H  H  L  T  H  C  I  T  Q  S  T  K  I  M  G  L  A  P  V  W  A  V  E  L  I  G  L  V  F  I  C  S  M  I  H  H  R  L  V  I  L  P  L  L  S  S  F  W  G  T  H  G  Y  L  L  R  E  L  S  I  P  L  V  *  Q  F  K  V  T  D  I  Y  G  H  V  T  S  F  F  F  L  G  C  I  G  R  F  F  F  L  F  L  S  F  L  L  V  R  L  Y  R  S  S  I  K  Y  T  F  N  A  *  L  I  K  I  F  G  H  S  G  *  T  M  Y  Y  E  T  *  *  L  L  N  F  V  Q  S  F  H  L  K  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0017H09.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104522" stop="104861"/>
                    <exon start="106995" stop="107606"/>
                    <exon start="108585" stop="109282"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1647</number_coding_nucleotides>
                  <number_encoded_amino_acids>549</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLIKCRTLMIMGNLFCKVLILVLLCLTTTCPLISYAVDDNFFQSECLQVPTSEFLGSVKSTINIVREVTSLVSKFASFFGDFRLSNAISDCLDLLDLSADELTWTLTATQNPKGKNNSTGNLSADLKNYLSGALINQDTCIEGFEGTNGLVKNLVAGNLNQVSSLVRNILLMVRPVSRKNVFPSEANAKRGKPWQFSRERKLTSNEEDHNLFPSWIKRKDRRLLQASNSTKGVITDVVVALDGTGNFTRIKDAIDAAPQLSTKRFVIYIKKGIYKEYVEISKKKWNIMMIGDGIDVTIISGNRNFIDGWTTYRSATFAVKGQGFIARDITFENTSGPEKHQAVAFRSDSDLSVLFRCAVRGYQDTLYAHSMRQFYRDCTITGTVDFIFGDGTAIFQNCQILARKGLSQQKNTITAQGRKEIAETTGFTIQFCNISGEPDLLTSLNSTYTYLGRPWKTYSRTVIMQSYMSNVIRPQGWLEWNGNTSLDTLYYAEYQNYGPGAGLGGRVNWPGFHLLNDSSQASNFTVAQFLLGNSWLPPTGVKYTAGLAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="114765" PGL_stop="114116"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114765" e_stop="114116"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="114765" e_stop="114116" e_length="650"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114765" stop="114116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGTTGTTATTCTTTTCATTGTTGGAAAACATATCGTGTGAGTTTATTGGGAAATAGTGGAGGAAATATTAACCTATGTGTTATGTTTATTTACTCTATCCTAACAAACCTATCGCTTGTGTTTTCAAGATTCCGATGCTTTGGTTTGGATGTGATTCCCTTTTCCGTTTGGTTTATTTGTTTGATTGAGTAAATGTTATAGTCCATAAAGTATGTTTTTTTCTTTGGTCACTGCAATTGAAATTTGCTAATGTACTTTTTTATTTTGTGAACTCCACTCGAGTCCATTTGGACCCCATCTCTCTCCTTGCATCCTATGTTTGAGCCACAAAGGCTCAAACCTTTACCCCTGAGTCAGCCTCACTAGCAATAGAGAAGATGAATAGATCCTGAAGTTTGGACGAATTCGAAATAGGCCAAAGCAAATTTAAGAGTTGAAGAAGTTGGGCCAAGAAGCCTCCTTCATCTTATTTTATTTTATTTATTTTGTATTTTGTTATTTTGGGGCCTAAGCCCTTGTGGCTTTGTTTTTTTTCATTATTATTATCTCGTTTAATTTAGGACAGATACACATCAAATGGGCCTAAATCCCAGAAACGAAAGGGTTCAAATACCGATCTAAGTAGACAGAAATTGAATTTGGACTCAA</gDNA_template>
            <first_frame> L  V  V  I  L  F  I  V  G  K  H  I  V  *  V  Y  W  E  I  V  E  E  I  L  T  Y  V  L  C  L  F  T  L  S  *  Q  T  Y  R  L  C  F  Q  D  S  D  A  L  V  W  M  *  F  P  F  P  F  G  L  F  V  *  L  S  K  C  Y  S  P  *  S  M  F  F  S  L  V  T  A  I  E  I  C  *  C  T  F  L  F  C  E  L  H  S  S  P  F  G  P  H  L  S  P  C  I  L  C  L  S  H  K  G  S  N  L  Y  P  *  V  S  L  T  S  N  R  E  D  E  *  I  L  K  F  G  R  I  R  N  R  P  K  Q  I  *  E  L  K  K  L  G  Q  E  A  S  F  I  L  F  Y  F  I  Y  F  V  F  C  Y  F  G  A  *  A  L  V  A  L  F  F  F  I  I  I  I  S  F  N  L  G  Q  I  H  I  K  W  A  *  I  P  E  T  K  G  F  K  Y  R  S  K  *  T  E  I  E  F  G  L   </first_frame>
            <second_frame>  L  L  L  F  F  S  L  L  E  N  I  S  C  E  F  I  G  K  *  W  R  K  Y  *  P  M  C  Y  V  Y  L  L  Y  P  N  K  P  I  A  C  V  F  K  I  P  M  L  W  F  G  C  D  S  L  F  R  L  V  Y  L  F  D  *  V  N  V  I  V  H  K  V  C  F  F  L  W  S  L  Q  L  K  F  A  N  V  L  F  Y  F  V  N  S  T  R  V  H  L  D  P  I  S  L  L  A  S  Y  V  *  A  T  K  A  Q  T  F  T  P  E  S  A  S  L  A  I  E  K  M  N  R  S  *  S  L  D  E  F  E  I  G  Q  S  K  F  K  S  *  R  S  W  A  K  K  P  P  S  S  Y  F  I  L  F  I  L  Y  F  V  I  L  G  P  K  P  L  W  L  C  F  F  S  L  L  L  S  R  L  I  *  D  R  Y  T  S  N  G  P  K  S  Q  K  R  K  G  S  N  T  D  L  S  R  Q  K  L  N  L  D  S  </second_frame>
            <third_frame>   C  C  Y  S  F  H  C  W  K  T  Y  R  V  S  L  L  G  N  S  G  G  N  I  N  L  C  V  M  F  I  Y  S  I  L  T  N  L  S  L  V  F  S  R  F  R  C  F  G  L  D  V  I  P  F  S  V  W  F  I  C  L  I  E  *  M  L  *  S  I  K  Y  V  F  F  F  G  H  C  N  *  N  L  L  M  Y  F  F  I  L  *  T  P  L  E  S  I  W  T  P  S  L  S  L  H  P  M  F  E  P  Q  R  L  K  P  L  P  L  S  Q  P  H  *  Q  *  R  R  *  I  D  P  E  V  W  T  N  S  K  *  A  K  A  N  L  R  V  E  E  V  G  P  R  S  L  L  H  L  I  L  F  Y  L  F  C  I  L  L  F  W  G  L  S  P  C  G  F  V  F  F  H  Y  Y  Y  L  V  *  F  R  T  D  T  H  Q  M  G  L  N  P  R  N  E  R  V  Q  I  P  I  *  V  D  R  N  *  I  W  T  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0017H09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="116136" PGL_stop="115033"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116136" e_stop="115033"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="116136" e_stop="115033" e_length="1104"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116136" stop="115738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115744" stop="115033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115743" stop="115149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115743" stop="115255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247007" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGATTTCTTCACGCATGTAAAACAGTGAACAAACCCAGAAGCTCAATCGCGCGTGATAGTCGTCCCTGTCCTCGTACGGTTGCAACAGCAAAAAGCACCGGTAAGGCACGCGTTTTGCGTCTTTGTGACCTCCGGATAAGTCCACGTTGCGCTCGAAGCAATAGTCGTCGATTCGCCCTTACCTCTTTCGGAATGGGTCAAAATCTTAGCAAAATGTGTGTTTCCCATTTATGCAAAAAGTTGTTTGAGTTATGAACAAGAATTCGAAATGGGTCTTTGGTTTTACTTGAAATCAGCCCGCCTCTCCCTAAGTTTTACCCTAATTTTCAAGCTATACATGCTTCTTATTATTCACTATAGGAAAGAGGCGGAAAAAAAAGAAAAAATTTTTGAGTTAGTAAAGGCTGGAAAGAACAGTGCAAAAGGTTAGGAGATATATCTTTTAACTTTGAAAAGAGTAGCTTAGCTGAGAGATAGAGGATAAAAATTAGAGTTAATAGTGAACGATTGAGGTGATATTGCTTCGGTTCTGTTTTGTGGCAATCTCACCGGAGTTGTCAGAATTCACATTGTGGTGGAGGAATCGCCTCAGTTCTCTGCTCGTTTTGTCCCAGTCACCGCCTCTTAAAAGGTAAAAATCTCAAATTTTGTAGCTTCTGTTTGGGTTGACGTAGATGTATAATTTGGCGGGATCTTCCAGTCCGTTCTTGTTATTTCCGCTGCTTGGCTTTCCTTTTTGTGATATTAAAATTGCTAACAATGATATCTCTTCTTTCATTTATCTTGCTATTTCTGAATGATGTTGTTCCTTTGTGTTGTTTCTGAATTCGAGTGTTTAAACTAGCCCTGAAAAAATGTTTATTTATTTTAGTTTAACTCTATCCGTGGCGAATCAGTGTATCAATACTGTGTGGCTTTCTCTTTCATACGAGCTAAGTATACATAGTCACTCGAGCTCACTTTTTTTATGTACTAGTCAACAGGTTTCTGCAACTACCATGCTACTATTTAGAATTTAAAGGTTTGACAAATCTTGTCTATTTCTTTTATATTCTTATTTCTTAGTGTATTGATGTGTTTTATAAGTTATTTATGAGGAAAATT</gDNA_template>
            <first_frame> R  F  L  H  A  C  K  T  V  N  K  P  R  S  S  I  A  R  D  S  R  P  C  P  R  T  V  A  T  A  K  S  T  G  K  A  R  V  L  R  L  C  D  L  R  I  S  P  R  C  A  R  S  N  S  R  R  F  A  L  T  S  F  G  M  G  Q  N  L  S  K  M  C  V  S  H  L  C  K  K  L  F  E  L  *  T  R  I  R  N  G  S  L  V  L  L  E  I  S  P  P  L  P  K  F  Y  P  N  F  Q  A  I  H  A  S  Y  Y  S  L  *  E  R  G  G  K  K  R  K  N  F  *  V  S  K  G  W  K  E  Q  C  K  R  L  G  D  I  S  F  N  F  E  K  S  S  L  A  E  R  *  R  I  K  I  R  V  N  S  E  R  L  R  *  Y  C  F  G  S  V  L  W  Q  S  H  R  S  C  Q  N  S  H  C  G  G  G  I  A  S  V  L  C  S  F  C  P  S  H  R  L  L  K  G  K  N  L  K  F  C  S  F  C  L  G  *  R  R  C  I  I  W  R  D  L  P  V  R  S  C  Y  F  R  C  L  A  F  L  F  V  I  L  K  L  L  T  M  I  S  L  L  S  F  I  L  L  F  L  N  D  V  V  P  L  C  C  F  *  I  R  V  F  K  L  A  L  K  K  C  L  F  I  L  V  *  L  Y  P  W  R  I  S  V  S  I  L  C  G  F  L  F  H  T  S  *  V  Y  I  V  T  R  A  H  F  F  Y  V  L  V  N  R  F  L  Q  L  P  C  Y  Y  L  E  F  K  G  L  T  N  L  V  Y  F  F  Y  I  L  I  S  *  C  I  D  V  F  Y  K  L  F  M  R  K  I </first_frame>
            <second_frame>  D  F  F  T  H  V  K  Q  *  T  N  P  E  A  Q  S  R  V  I  V  V  P  V  L  V  R  L  Q  Q  Q  K  A  P  V  R  H  A  F  C  V  F  V  T  S  G  *  V  H  V  A  L  E  A  I  V  V  D  S  P  L  P  L  S  E  W  V  K  I  L  A  K  C  V  F  P  I  Y  A  K  S  C  L  S  Y  E  Q  E  F  E  M  G  L  W  F  Y  L  K  S  A  R  L  S  L  S  F  T  L  I  F  K  L  Y  M  L  L  I  I  H  Y  R  K  E  A  E  K  K  E  K  I  F  E  L  V  K  A  G  K  N  S  A  K  G  *  E  I  Y  L  L  T  L  K  R  V  A  *  L  R  D  R  G  *  K  L  E  L  I  V  N  D  *  G  D  I  A  S  V  L  F  C  G  N  L  T  G  V  V  R  I  H  I  V  V  E  E  S  P  Q  F  S  A  R  F  V  P  V  T  A  S  *  K  V  K  I  S  N  F  V  A  S  V  W  V  D  V  D  V  *  F  G  G  I  F  Q  S  V  L  V  I  S  A  A  W  L  S  F  L  *  Y  *  N  C  *  Q  *  Y  L  F  F  H  L  S  C  Y  F  *  M  M  L  F  L  C  V  V  S  E  F  E  C  L  N  *  P  *  K  N  V  Y  L  F  *  F  N  S  I  R  G  E  S  V  Y  Q  Y  C  V  A  F  S  F  I  R  A  K  Y  T  *  S  L  E  L  T  F  F  M  Y  *  S  T  G  F  C  N  Y  H  A  T  I  *  N  L  K  V  *  Q  I  L  S  I  S  F  I  F  L  F  L  S  V  L  M  C  F  I  S  Y  L  *  G  K   </second_frame>
            <third_frame>   I  S  S  R  M  *  N  S  E  Q  T  Q  K  L  N  R  A  *  *  S  S  L  S  S  Y  G  C  N  S  K  K  H  R  *  G  T  R  F  A  S  L  *  P  P  D  K  S  T  L  R  S  K  Q  *  S  S  I  R  P  Y  L  F  R  N  G  S  K  S  *  Q  N  V  C  F  P  F  M  Q  K  V  V  *  V  M  N  K  N  S  K  W  V  F  G  F  T  *  N  Q  P  A  S  P  *  V  L  P  *  F  S  S  Y  T  C  F  L  L  F  T  I  G  K  R  R  K  K  K  K  K  F  L  S  *  *  R  L  E  R  T  V  Q  K  V  R  R  Y  I  F  *  L  *  K  E  *  L  S  *  E  I  E  D  K  N  *  S  *  *  *  T  I  E  V  I  L  L  R  F  C  F  V  A  I  S  P  E  L  S  E  F  T  L  W  W  R  N  R  L  S  S  L  L  V  L  S  Q  S  P  P  L  K  R  *  K  S  Q  I  L  *  L  L  F  G  L  T  *  M  Y  N  L  A  G  S  S  S  P  F  L  L  F  P  L  L  G  F  P  F  C  D  I  K  I  A  N  N  D  I  S  S  F  I  Y  L  A  I  S  E  *  C  C  S  F  V  L  F  L  N  S  S  V  *  T  S  P  E  K  M  F  I  Y  F  S  L  T  L  S  V  A  N  Q  C  I  N  T  V  W  L  S  L  S  Y  E  L  S  I  H  S  H  S  S  S  L  F  L  C  T  S  Q  Q  V  S  A  T  T  M  L  L  F  R  I  *  R  F  D  K  S  C  L  F  L  L  Y  S  Y  F  L  V  Y  *  C  V  L  *  V  I  Y  E  E  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0017H09.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115997" stop="115707"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VHVALEAIVVDSPLPLSEWVKILAKCVFPIYAKSCLSYEQEFEMGLWFYLKSARLSLSFTLIFKLYMLLIIHYRKEAEKKEKIFELVKAGKNSAKG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0017H09.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116136" stop="115882"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFLHACKTVNKPRSSIARDSRPCPRTVATAKSTGKARVLRLCDLRISPRCARSNSRRFALTSFGMGQNLSKMCVSHLCKKLFEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 195 chains have been computed
$ 
$ memory statistics:
$ 119672 bytes spliced alignments in total
$ 59 spliced alignments have been stored
$ 2028 bytes was the average size of a spliced alignment
$ 23488 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1468 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 239 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 17:41:47
-->
