<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 08:40:40"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLm0034N13-mRrG8/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLm0034N13-mRrG8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0034N13-mRrG8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6507" ref_strand="+" ref_description="SGN-M6507 C2_At1g05060 [cosii_markers]">
      <seq>ataatatttctgccttgtcgtctttctttttcatcatttttttttatatatataaagttttatcttgtgtgtaagtaagggaaatagaggtaaaaaaaaaatgtcatggtattatatataaccttgagagattcaaattcaaccaaaccaaaatccaagaagaagaagaatgagttttctagcaggaagagtagcaggaaaagaaggagcttttttctttgaagaatccaaacatgccgttacccgtttagcccaaaagatcaacaaaaatccaacttcttctccttccaattccacttctctaaatcaagaatcatcttcccctgatgttcttcctgagattcttcgacattctttaccttccaagattttccattctccttcctctgcagattcctcactctctaatacttccaaatgggttctccctactgatcccaatacgacaaattccgtatctccagatgctcttaatcctctcagagcttatgtttctcttccacaagtaacctttggacctaaaaggtggcagttgccagatacagaaaactctgtacaagcctcaacggcaaatgacttgcgtcgcgataaatacacaccgattaatcctgaaaaacttaaagctgcagctgtggggatgtctcaaattgcaaaggcatttgctattgccactgctcttgtcttaggtggttccgccttgacgtttggcttggcagcatccaagctagagttgcacaatcctgatgatatccggacgaaagggaaggacatggttcagccaagattggaaacattcaaagaacagctgaatcctttaaggatttgggctgaagagaagtcgaaaaaatggcatttggagaaaaaagaacacattaaagagaagcctttgataaaagagctctctaaaatattaggtgccaagtcgtcaaactaatgtcgatgcagtttattgcagatagctatgcattcatcagaatattttgttttcttctctctcactgtgtaattttgaataatatgatctgtcagcagttagtattttctatgtatcctgcagtactacattttctctgtaaattgctgtgttttctatgacgaataaaaaaacatttgatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-mRrG8/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07SLm0034N13.2" temp_strand="+" temp_description="C07SLm0034N13.2  AC212651.2 htgs_phase:2 submitted_to_sgn_as:gi|167860213|gb|AC212651.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="52509" stop="55809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52809" g_stop="53333" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53334" i_stop="54061" i_length="728">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54062" g_stop="54183" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="647" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54184" i_stop="54574" i_length="391">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54575" g_stop="54666" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="739" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54667" i_stop="55055" i_length="389">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55056" g_stop="55142" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="826" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55143" i_stop="55215" i_length="73">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55216" g_stop="55516" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="827" r_stop="1127" r_length="301" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.2" gen_strand="+" ref_id="SGN-M6507" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1127</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52809" e_stop="53333"/>
          <exon e_start="54062" e_stop="54183"/>
          <exon e_start="54575" e_stop="54666"/>
          <exon e_start="55056" e_stop="55142"/>
          <exon e_start="55216" e_stop="55516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATATTTCTGCCTTGTCGTCTTTCTTTTTCATCATTTTTTTTTATATATATAAAGTTTTATCTTGTGTGTAAGTAAGGGAAATAGAGGTAAAAAAAAAATGTCATGGTATTATATATAACCTTGAGAGATTCAAATTCAACCAAACCAAAATCCAAGAAGAAGAAGAATGAGTTTTCTAGCAGGAAGAGTAGCAGGAAAAGAAGGAGCTTTTTTCTTTGAAGAATCCAAACATGCCGTTACCCGTTTAGCCCAAAAGATCAACAAAAATCCAACTTCTTCTCCTTCCAATTCCACTTCTCTAAATCAAGAATCATCTTCCCCTGATGTTCTTCCTGAGATTCTTCGACATTCTTTACCTTCCAAGATTTTCCATTCTCCTTCCTCTGCAGATTCCTCACTCTCTAATACTTCCAAATGGGTTCTCCCTACTGATCCCAATACGACAAATTCCGTATCTCCAGATGCTCTTAATCCTCTCAGAGCTTATGTTTCTCTTCCACAAGTAACCTTTGGACCTAAAAGGTAACTTTACTGCTCTCTTTGATTGAAAGGGTACTGATTTTTTCTCTTTTCTTTTTGTTGTTTAGCTGAAATATGATTGAATTTTGGATGTTGGGTTTTAGCTAGTTTATGTATTCTAACTGAAGAATGGGTACTGAGTTTTGTTCTTCTTTTAGCTAATTAGGTGATTGAAAAAGATTGAATTTTTGATGTTGGGTTTAGCAAAATTTTAATTTTTGAACATCTTCAAATGGTGTACTAGGTTGTCTTTTTCATTTCTTATCTAAACGTTTCATATTCTTTGGAGTGAAAGAATTGATGGGAGATTACTTAGTTTGGCGAATTTGTGATTACAGATTGAAATTTTGTATGTTGGGGTTAAGTTTTGATGCACTTACAGAAAATGAAAAAGGGATTTATTAACATGACCAGTTTTTAAAATGGTTTGATTATCTTCTGTAATTTTGGTGAGGTGTTACCCTGGATATGTGACTTAAGACTATTTGACAATCAAGTGTGAGTATGGACTATGGTACTGATTTAGCATGGTGTAAGTGAAGGTTTCATCTGTATTAGGCAATGTCAACTCTCTGTGTTGGATAACATTGTGGGATTGTAACTAATATGAAAATGTGCTTTTAATTGCTTCAGCATTCAATAGTTAGTTAGGGTGTATGAAGTAAACCTCTCTATCTTCTTTGATTATATACATCTTCTTTTGACGATCACATTGGTAATATCTTCTCCAGGTGGCAGTTGCCAGATACAGAAAACTCTGTACAAGCCTCAACGGCAAATGACTTGCGTCGCGATAAATACACACCGATTAATCCTGAAAAACTTAAAGCTGCAGCTGTGGGGATGTCTCAAAGTAAGCCAAAACCTTTACATGTTTGGTTCCATTTTGTTAGAATTCCTCTCCCCCAAAACCAAATGTAATTGCTTTTGGATTAGAAAACTCATGTAGAGTTTTCAGAAATCAAATGAAAATATTTTACAGAATTATAAAAATATATCGATAATTAATGTTCTCTCAAGAAATTCGACAAACATACTATAAGTTTTATGTTCTATAGGCTGAGGTATAGTCATTTTAAGCCATACCTACCGTATTATAAAATTCTTGATCTGGAAGTATTTCCAGAAAGTAGTAAATCTGAGAAATTTTACATTCAACACGATATACCTCGGAAACCACCCAAATATGATATTAAGTGATATTGCTTTTGGATCCTTATTGTTTATAGTTCTGTTCAATGTAGTTGCAAAGGCATTTGCTATTGCCACTGCTCTTGTCTTAGGTGGTTCCGCCTTGACGTTTGGCTTGGCAGCATCCAAGCTAGAGTTGCACAATGTAAGCATAATCTTTCTTTCTCTTTTGATTTACCTTATGGATGTTTGAATCTCTACTGCTAAACTTAATTTCCGCTAAACATTACAATGAGGTAAGATCACATATGGGAGTAACACTCAATCCTTTGCTTTTGAGATGGAAGAGTACCTGATATCAATGGAGGATGGTGATATTATGATTTTTTTTTTTGGTTAGTGGGTTGACACGCAAGAAGAGGAATTTTGACGTCTACATAACTACATTTCTGCTTTAGTCGTGTTCAGTTGAGGAATTTGTCTGTTTGATTTTAGTTTATAGACAGTTTTAGTTAGATAAAGAGTGTTGCTTAGTTATCCACTGTTCTATGCTTCTGATTTATGTAATATGTGGATGATGCTGATGTTGCGCAGCCTGATGATATCCGGACGAAAGGGAAGGACATGGTTCAGCCAAGATTGGAAACATTCAAAGAACAGCTGAATCCTTTAAGGATTTGGGTAAGCAAATGTTCAACTATTCTTCAATATTTGCTTCTATCGTTATCTAATGAATGGTAGCCTCTATTCTCAGGCTGAAGAGAAGTCGAAAAAATGGCATTTGGAGAAAAAAGAACACATTAAAGAGAAGCCTTTGATAAAAGAGCTCTCTAAAATATTAGGTGCCAAGTCGTCAAACTAATGTCGATGCAGTTTATTGCAGATAGCTATGCATTCATCAGAATATTTTGTTTTCTTCTCTCTCACTGTGTAATTTTGAATAATATGATCTGTCAGCAGTTAGTATTTTCTATGTATCCTGCAGTACTACATTTTCTCTGTAAATTGCTGTGTTTTCTATGACGAATAAAAAAACATTTGATGAACATGTAACT</genome_strand>
        <mrna_strand>ATAATATTTCTGCCTTGTCGTCTTTCTTTTTCATCATTTTTTTTTATATATATAAAGTTTTATCTTGTGTGTAAGTAAGGGAAATAGAGGTAAAAAAAAAATGTCATGGTATTATATATAACCTTGAGAGATTCAAATTCAACCAAACCAAAATCCAAGAAGAAGAAGAATGAGTTTTCTAGCAGGAAGAGTAGCAGGAAAAGAAGGAGCTTTTTTCTTTGAAGAATCCAAACATGCCGTTACCCGTTTAGCCCAAAAGATCAACAAAAATCCAACTTCTTCTCCTTCCAATTCCACTTCTCTAAATCAAGAATCATCTTCCCCTGATGTTCTTCCTGAGATTCTTCGACATTCTTTACCTTCCAAGATTTTCCATTCTCCTTCCTCTGCAGATTCCTCACTCTCTAATACTTCCAAATGGGTTCTCCCTACTGATCCCAATACGACAAATTCCGTATCTCCAGATGCTCTTAATCCTCTCAGAGCTTATGTTTCTCTTCCACAAGTAACCTTTGGACCTAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAGTTGCCAGATACAGAAAACTCTGTACAAGCCTCAACGGCAAATGACTTGCGTCGCGATAAATACACACCGATTAATCCTGAAAAACTTAAAGCTGCAGCTGTGGGGATGTCTCAAA.......................................................................................................................................................................................................................................................................................................................................................................................................TTGCAAAGGCATTTGCTATTGCCACTGCTCTTGTCTTAGGTGGTTCCGCCTTGACGTTTGGCTTGGCAGCATCCAAGCTAGAGTTGCACAAT.....................................................................................................................................................................................................................................................................................................................................................................................................CCTGATGATATCCGGACGAAAGGGAAGGACATGGTTCAGCCAAGATTGGAAACATTCAAAGAACAGCTGAATCCTTTAAGGATTTGG.........................................................................GCTGAAGAGAAGTCGAAAAAATGGCATTTGGAGAAAAAAGAACACATTAAAGAGAAGCCTTTGATAAAAGAGCTCTCTAAAATATTAGGTGCCAAGTCGTCAAACTAATGTCGATGCAGTTTATTGCAGATAGCTATGCATTCATCAGAATATTTTGTTTTCTTCTCTCTCACTGTGTAATTTTGAATAATATGATCTGTCAGCAGTTAGTATTTTCTATGTATCCTGCAGTACTACATTTTCTCTGTAAATTGCTGTGTTTTCTATGACGAATAAAAAAACATTTGATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0034N13-mRrG8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M430-F" ref_strand="+" ref_description="SGN-M430-F TG143-F [rflp_markers_forward]">
      <seq>gggagacagcttgcatgcctgcagattcctcactctctaatacttccaaatgggttctccctactgatcccaatacgacaaattccgtatctccagatgctcttaatcctctcagagcttatgtttctcttccacaagtaacctttggacctaaaaggtaactttactgctctctttgattgaaagggtactgattttttctcttttctttttgttgtttagctgaaatatgattgaattttggatgttgggttttagctagtttatgtattctaactgaagaatgggtactgagttttgttcttcttttagctaattaggtgattgaaaaagattgaatttttgatgttgggtttagcaaaattttaatttttgaacatcttcaaatggtgtactaggttgtctttttcatttcttatctaaacgtttcatattctttggagtgaaagaattgatgggagattacttagtttggcgaatttgtgattacagattgaaattttgtatgttggggttaagttttgatgcacttacagaaaatgaaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-mRrG8/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07SLm0034N13.2" temp_strand="+" temp_description="C07SLm0034N13.2  AC212651.2 htgs_phase:2 submitted_to_sgn_as:gi|167860213|gb|AC212651.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="52887" stop="54025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53201" g_stop="53725" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="549" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.2" gen_strand="+" ref_id="SGN-M430-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M430-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53201" e_stop="53725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTCACTCTCTAATACTTCCAAATGGGTTCTCCCTACTGATCCCAATACGACAAATTCCGTATCTCCAGATGCTCTTAATCCTCTCAGAGCTTATGTTTCTCTTCCACAAGTAACCTTTGGACCTAAAAGGTAACTTTACTGCTCTCTTTGATTGAAAGGGTACTGATTTTTTCTCTTTTCTTTTTGTTGTTTAGCTGAAATATGATTGAATTTTGGATGTTGGGTTTTAGCTAGTTTATGTATTCTAACTGAAGAATGGGTACTGAGTTTTGTTCTTCTTTTAGCTAATTAGGTGATTGAAAAAGATTGAATTTTTGATGTTGGGTTTAGCAAAATTTTAATTTTTGAACATCTTCAAATGGTGTACTAGGTTGTCTTTTTCATTTCTTATCTAAACGTTTCATATTCTTTGGAGTGAAAGAATTGATGGGAGATTACTTAGTTTGGCGAATTTGTGATTACAGATTGAAATTTTGTATGTTGGGGTTAAGTTTTGATGCACTTACAGAAAATGAAAAAGG</genome_strand>
        <mrna_strand>ATTCCTCACTCTCTAATACTTCCAAATGGGTTCTCCCTACTGATCCCAATACGACAAATTCCGTATCTCCAGATGCTCTTAATCCTCTCAGAGCTTATGTTTCTCTTCCACAAGTAACCTTTGGACCTAAAAGGTAACTTTACTGCTCTCTTTGATTGAAAGGGTACTGATTTTTTCTCTTTTCTTTTTGTTGTTTAGCTGAAATATGATTGAATTTTGGATGTTGGGTTTTAGCTAGTTTATGTATTCTAACTGAAGAATGGGTACTGAGTTTTGTTCTTCTTTTAGCTAATTAGGTGATTGAAAAAGATTGAATTTTTGATGTTGGGTTTAGCAAAATTTTAATTTTTGAACATCTTCAAATGGTGTACTAGGTTGTCTTTTTCATTTCTTATCTAAACGTTTCATATTCTTTGGAGTGAAAGAATTGATGGGAGATTACTTAGTTTGGCGAATTTGTGATTACAGATTGAAATTTTGTATGTTGGGGTTAAGTTTTGATGCACTTACAGAAAATGAAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0034N13-mRrG8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M430-R" ref_strand="+" ref_description="SGN-M430-R TG143-R [rflp_markers_reverse]">
      <seq>gggagacaagcttgcatgcctgcagattcctcactctctaatacttccaaatgggttctccctactgatcccaatacgacaaattccgtatctccagatgctcttaatcctctcagagcttatgtttctcttccacaagtaacctttggacctaaaaggtaactttactgctctctttgattgaaagggtactgattttttctcttttctttttgttgtttagctgaaatatgattgaattttggatgttgggttttagctagtttatgtattctaactgaagaatgggtactgagttttgttcttcttttagctaattaggtgattgaaaaagattgaatttttgatgttgggtttagcaaaattttaatttttgaacatcttcaaatggtgtactaggttgtctttttcatttcttatctaaacgtttcatattctttggagtgaaagaattgatgggagattacttagtttggcgaatttgtgattacagattgaaattttgtatgttggggttaagttttgatgcacttacagaaaatgaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-mRrG8/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07SLm0034N13.2" temp_strand="+" temp_description="C07SLm0034N13.2  AC212651.2 htgs_phase:2 submitted_to_sgn_as:gi|167860213|gb|AC212651.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="52882" stop="54024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53201" g_stop="53724" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="549" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.2" gen_strand="+" ref_id="SGN-M430-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M430-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53201" e_stop="53724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTCACTCTCTAATACTTCCAAATGGGTTCTCCCTACTGATCCCAATACGACAAATTCCGTATCTCCAGATGCTCTTAATCCTCTCAGAGCTTATGTTTCTCTTCCACAAGTAACCTTTGGACCTAAAAGGTAACTTTACTGCTCTCTTTGATTGAAAGGGTACTGATTTTTTCTCTTTTCTTTTTGTTGTTTAGCTGAAATATGATTGAATTTTGGATGTTGGGTTTTAGCTAGTTTATGTATTCTAACTGAAGAATGGGTACTGAGTTTTGTTCTTCTTTTAGCTAATTAGGTGATTGAAAAAGATTGAATTTTTGATGTTGGGTTTAGCAAAATTTTAATTTTTGAACATCTTCAAATGGTGTACTAGGTTGTCTTTTTCATTTCTTATCTAAACGTTTCATATTCTTTGGAGTGAAAGAATTGATGGGAGATTACTTAGTTTGGCGAATTTGTGATTACAGATTGAAATTTTGTATGTTGGGGTTAAGTTTTGATGCACTTACAGAAAATGAAAAAG</genome_strand>
        <mrna_strand>ATTCCTCACTCTCTAATACTTCCAAATGGGTTCTCCCTACTGATCCCAATACGACAAATTCCGTATCTCCAGATGCTCTTAATCCTCTCAGAGCTTATGTTTCTCTTCCACAAGTAACCTTTGGACCTAAAAGGTAACTTTACTGCTCTCTTTGATTGAAAGGGTACTGATTTTTTCTCTTTTCTTTTTGTTGTTTAGCTGAAATATGATTGAATTTTGGATGTTGGGTTTTAGCTAGTTTATGTATTCTAACTGAAGAATGGGTACTGAGTTTTGTTCTTCTTTTAGCTAATTAGGTGATTGAAAAAGATTGAATTTTTGATGTTGGGTTTAGCAAAATTTTAATTTTTGAACATCTTCAAATGGTGTACTAGGTTGTCTTTTTCATTTCTTATCTAAACGTTTCATATTCTTTGGAGTGAAAGAATTGATGGGAGATTACTTAGTTTGGCGAATTTGTGATTACAGATTGAAATTTTGTATGTTGGGGTTAAGTTTTGATGCACTTACAGAAAATGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0034N13-mRrG8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2221" ref_strand="+" ref_description="SGN-M2221 T1719 [cos_markers]">
      <seq>aaaaatatctctttcaaaagttgcaaaaataagtaataagtaatataaatggctaaatttggcgatttgggtaatcttctagtgttgtgtatactactaggaatagttggttctagctatggtcagttgcagctcaacttctatgcaaagagctgtccgcaagcagaaaagataattcaagattatgtgtataagcaaatcccaaaggctccgtctcttgcacctgcgttgctcagaatgcatttccacgattgctttgtcaggggttgtgatggttctgtactcctgaatttcacttcgagcactaaaaaccagactgaaaaagtggctgttcctaatcaaacgctgagaggcttctcatttatcgatggtgtgaagaaagcattggaagctgaatgccctggagttgtgtcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-mRrG8/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07SLm0034N13.2" temp_strand="+" temp_description="C07SLm0034N13.2  AC212651.2 htgs_phase:2 submitted_to_sgn_as:gi|167860213|gb|AC212651.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="79138" stop="80233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79438" g_stop="79701" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79702" i_stop="79780" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79781" g_stop="79933" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="417" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.2" gen_strand="+" ref_id="SGN-M2221" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M2221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79438" e_stop="79701"/>
          <exon e_start="79781" e_stop="79933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATCTCTTTCAAAAGTTGCAAAAATAAGTAATAAGTAATATAAATGGCTAAATTTGGCGATTTGGGTAATCTTCTAGTGTTGTGTATACTACTAGGAATAGTTGGTTCTAGCTATGGTCAGTTGCAGCTCAACTTCTATGCAAAGAGCTGTCCGCAAGCAGAAAAGATAATTCAAGATTATGTGTATAAGCAAATCCCAAAGGCTCCGTCTCTTGCACCTGCGTTGCTCAGAATGCATTTCCACGATTGCTTTGTCAGGGCAAGTATATACCTCATTTTATGAAGAGTGCAGTTCTTAAAGTGATAATTCTGATTTTATTTTATTGGGTTCTTAACAGGGTTGTGATGGTTCTGTACTCCTGAATTTCACTTCGAGCACTAAAAACCAGACTGAAAAAGTGGCTGTTCCTAATCAAACGCTGAGAGGCTTCTCATTTATCGATGGTGTGAAGAAAGCATTGGAAGCTGAATGCCCTGGAGTTGTGTCATGT</genome_strand>
        <mrna_strand>AAAAATATCTCTTTCAAAAGTTGCAAAAATAAGTAATAAGTAATATAAATGGCTAAATTTGGCGATTTGGGTAATCTTCTAGTGTTGTGTATACTACTAGGAATAGTTGGTTCTAGCTATGGTCAGTTGCAGCTCAACTTCTATGCAAAGAGCTGTCCGCAAGCAGAAAAGATAATTCAAGATTATGTGTATAAGCAAATCCCAAAGGCTCCGTCTCTTGCACCTGCGTTGCTCAGAATGCATTTCCACGATTGCTTTGTCAGG...............................................................................GGTTGTGATGGTTCTGTACTCCTGAATTTCACTTCGAGCACTAAAAACCAGACTGAAAAAGTGGCTGTTCCTAATCAAACGCTGAGAGGCTTCTCATTTATCGATGGTGTGAAGAAAGCATTGGAAGCTGAATGCCCTGGAGTTGTGTCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0034N13-mRrG8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M434-R" ref_strand="+" ref_description="SGN-M434-R TG149-R [rflp_markers_reverse]">
      <seq>gcatgcctgcagagtcatcaagaatggctgccttgtcaagacacctatttgataacgactactggttagcttctatttatatcaagtaattgtttgatttcttaattgtttactaaaactactacattcaggtcaatcctggccgtatatgttaaaatttcagcaacttacgactacattatgatgcaattgcctgtgaatatagtatcgtgatgtctattgcccattttgtgaactctctctggtatgactagatttgcctagcgatactgggcttccatcctatgttgggatggtctagtccatgatcgaccatgcttattgttgttttgcatcgatattagatagtaatagtcttattttggttactacagttggttagataagcttacctcaacatatgtgtatgtgggactttggcattgtgatattcattcaagaagccagtatcagaagggtaactaagctttctcttcctccaagctaaaagcagaaccctccatatgatagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-mRrG8/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07SLm0034N13.2" temp_strand="+" temp_description="C07SLm0034N13.2  AC212651.2 htgs_phase:2 submitted_to_sgn_as:gi|167860213|gb|AC212651.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="102633" stop="103743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102937" g_stop="103443" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="513" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.2" gen_strand="+" ref_id="SGN-M434-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M434-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102937" e_stop="103443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGAGTCATCAAGAATGGCTGCCTTGTCAAGACACCTATTTGATAACGACTACTGGTTAGCTTCTATTTATATCAAGTAATTGTTTGATTTCTTAATTGTTTACTAAAACTACTACATTCAGGTCAATCCTGGCCGTATATGTTAAAATTTCAGCAACTTACGACTACATTATGATGCAATTGCCTGTGAATATAGTATCGTGATGTCTATTGCCCATTTTGTGAACTCTCTCTGGTATGACTAGATTTGCCTAGCGATACTGGGCTTCCATCCTATGTTGGGATGGTCTAGTCCATGATCGACCATGCTTATTGTTGTTTTGCATCGATATTAGATAGTAATAGTCTTATTTTGGTTACTACAGTTGGTTAGATAAGCTTACCTCAACATATGTGTATGTGGGACTTTGGCATTGTGATATTCATTCAAGAAGCCAGTATCAGAAGGGTAACTAAGCTTTCTCTTCCTCCAAGCTAAAAGCAGAACCCTCCATATGATAGTCA</genome_strand>
        <mrna_strand>CTGCAGAGTCATCAAGAATGGCTGCCTTGTCAAGACACCTATTTGATAACGACTACTGGTTAGCTTCTATTTATATCAAGTAATTGTTTGATTTCTTAATTGTTTACTAAAACTACTACATTCAGGTCAATCCTGGCCGTATATGTTAAAATTTCAGCAACTTACGACTACATTATGATGCAATTGCCTGTGAATATAGTATCGTGATGTCTATTGCCCATTTTGTGAACTCTCTCTGGTATGACTAGATTTGCCTAGCGATACTGGGCTTCCATCCTATGTTGGGATGGTCTAGTCCATGATCGACCATGCTTATTGTTGTTTTGCATCGATATTAGATAGTAATAGTCTTATTTTGGTTACTACAGTTGGTTAGATAAGCTTACCTCAACATATGTGTATGTGGGACTTTGGCATTGTGATATTCATTCAAGAAGCCAGTATCAGAAGGGTAACTAAGCTTTCTCTTCCTCCAAGCTAAAAGCAGAACCCTCCATATGATAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0034N13-mRrG8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M434-F" ref_strand="+" ref_description="SGN-M434-F TG149-F [rflp_markers_forward]">
      <seq>aagaatggctgccttgtcaagacacctatttgataacgactactggttatcttctatttatatcaagtaattggctgatttcttaattgtttactaaaactactacattcatggcaatcctggacgtatatgataaaatttcagcaacttacaactacattatgatgcagttgcctgtgaatatagaatcgcgatgtctattgcccattttgcgaactctctctggtatgactagatttgcctaacgatactgggcttccatcctatgttgggatggtctagtccatgatcaaccatgcttattgttggtttgcatccatattagatagcaatagtcttattttggatactacagctggttaaataagcttacctcaacatatgtgtatgagggactttggaattgtgatattcattcaagaagccataatcagaagggcaactaagctttctcttcctccaagctaaaagcagaaccctccatatgatactcaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-mRrG8/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07SLm0034N13.2" temp_strand="+" temp_description="C07SLm0034N13.2  AC212651.2 htgs_phase:2 submitted_to_sgn_as:gi|167860213|gb|AC212651.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="102650" stop="103748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102950" g_stop="103448" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.2" gen_strand="+" ref_id="SGN-M434-F" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M434-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102950" e_stop="103448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGGCTGCCTTGTCAAGACACCTATTTGATAACGACTACTGGTTAGCTTCTATTTATATCAAGTAATTGTTTGATTTCTTAATTGTTTACTAAAACTACTACATTCAGGTCAATCCTGGCCGTATATGTTAAAATTTCAGCAACTTACGACTACATTATGATGCAATTGCCTGTGAATATAGTATCGTGATGTCTATTGCCCATTTTGTGAACTCTCTCTGGTATGACTAGATTTGCCTAGCGATACTGGGCTTCCATCCTATGTTGGGATGGTCTAGTCCATGATCGACCATGCTTATTGTTGTTTTGCATCGATATTAGATAGTAATAGTCTTATTTTGGTTACTACAGTTGGTTAGATAAGCTTACCTCAACATATGTGTATGTGGGACTTTGGCATTGTGATATTCATTCAAGAAGCCAGTATCAGAAGGGTAACTAAGCTTTCTCTTCCTCCAAGCTAAAAGCAGAACCCTCCATATGATAGTCAAAGGA</genome_strand>
        <mrna_strand>AAGAATGGCTGCCTTGTCAAGACACCTATTTGATAACGACTACTGGTTATCTTCTATTTATATCAAGTAATTGGCTGATTTCTTAATTGTTTACTAAAACTACTACATTCATGGCAATCCTGGACGTATATGATAAAATTTCAGCAACTTACAACTACATTATGATGCAGTTGCCTGTGAATATAGAATCGCGATGTCTATTGCCCATTTTGCGAACTCTCTCTGGTATGACTAGATTTGCCTAACGATACTGGGCTTCCATCCTATGTTGGGATGGTCTAGTCCATGATCAACCATGCTTATTGTTGGTTTGCATCCATATTAGATAGCAATAGTCTTATTTTGGATACTACAGCTGGTTAAATAAGCTTACCTCAACATATGTGTATGAGGGACTTTGGAATTGTGATATTCATTCAAGAAGCCATAATCAGAAGGGCAACTAAGCTTTCTCTTCCTCCAAGCTAAAAGCAGAACCCTCCATATGATACTCAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0034N13-mRrG8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M138-R" ref_strand="+" ref_description="SGN-M138-R TG174-R [rflp_markers_reverse]">
      <seq>agcacattacatgtacaaaccatctcaagcgatcttctctcattttatcctcaatgtgtgttagttgcacctgttgcggatgtgatcatttctaatcttgtatgtacacacaaccatctcaacatccacatcttttattatactcatcttgtggagtgttggattttaccggcccaactcacttgcatataaaattattgctcttacaattattctataaaatctttctttcactccggtaggaattcttctatgaggtaacaccctgacagctcttctttatttctaccatcctattttgatttaatatgtatcattcttttttacataaggtactgttgtattcctcagcattaaggaatgctggccacctccaaaaattgttacagaaacagaaaatagaaacttcatttacaaagctcctaagaactctacaacccccctcttctgatccagcagcttagtagattagctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-mRrG8/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07SLm0034N13.2" temp_strand="+" temp_description="C07SLm0034N13.2  AC212651.2 htgs_phase:2 submitted_to_sgn_as:gi|167860213|gb|AC212651.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="118609" stop="119685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118909" g_stop="119385" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.2" gen_strand="+" ref_id="SGN-M138-R" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M138-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118909" e_stop="119385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACATTACATGTACAAACCATCTCAAGCGATCTTCTCTCATTTTATCCTCAATGTGTGTTAGTTGCACCTGTTGCGGATGTGATCATTTCTAATCTTGTATGTACACACAACCATCTCAACATCCACATCTTTTATTATACTCATCTTGTGGAGTGTTGGATTTTACCGGCCCAACTCACTTGCATATAAAATTATTGCTCTTACAATTATTCTATAAAATCTTTCTTTCACTCCGGTAGGAATTCTTCTATGAGGTAACACCCTGACAGCTCTTCTTTATTTCTACCATCCTATTTTGATTTAATATGTATCATTCTTTTTTACATAAGGTACTGTTGTATTCCTCAGCATTAAGGAATGCTGGCCACCTCCAAAAATTGTTACAGAAACAGAAAATAGAAACTTCATTTACAAAGCTCCTAAGAACTCTACAACCCCCCTCTTCTGATCCAGCAGCTTAGTAGATTACCTGTG</genome_strand>
        <mrna_strand>AGCACATTACATGTACAAACCATCTCAAGCGATCTTCTCTCATTTTATCCTCAATGTGTGTTAGTTGCACCTGTTGCGGATGTGATCATTTCTAATCTTGTATGTACACACAACCATCTCAACATCCACATCTTTTATTATACTCATCTTGTGGAGTGTTGGATTTTACCGGCCCAACTCACTTGCATATAAAATTATTGCTCTTACAATTATTCTATAAAATCTTTCTTTCACTCCGGTAGGAATTCTTCTATGAGGTAACACCCTGACAGCTCTTCTTTATTTCTACCATCCTATTTTGATTTAATATGTATCATTCTTTTTTACATAAGGTACTGTTGTATTCCTCAGCATTAAGGAATGCTGGCCACCTCCAAAAATTGTTACAGAAACAGAAAATAGAAACTTCATTTACAAAGCTCCTAAGAACTCTACAACCCCCCTCTTCTGATCCAGCAGCTTAGTAGATTAGCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0034N13-mRrG8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M138-F" ref_strand="+" ref_description="SGN-M138-F TG174-F [rflp_markers_forward]">
      <seq>cagcgatcttccaagatcttttagcgtctctagtggaagatgtataaaagtacaattttcaccttaagaaatttttgttttttttttcttcttttcccccaaaaaaggctaattatggcacatatataagcaatctcatcctagattaacacaagcacacattttccaatctgcaaaggcaaaagtagcccaaaccacatattaagtagtttattctgattttccccttgttgcaacaatcagacttacctacccatgcaccccaccagaaatgaacagaaaagtcagatgttagcatcgacgccaaagcagaacttctattaaattccagaatgaggtcctagataaagagattataagttattagaggaattacctcagaaatataaattggaactagtactgtattaacaccaattccaaggccaacaaggaatcttcccaagatcatttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0034N13-mRrG8/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07SLm0034N13.2" temp_strand="-" temp_description="C07SLm0034N13.2  AC212651.2 htgs_phase:2 submitted_to_sgn_as:gi|167860213|gb|AC212651.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0034N13, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="120952" stop="119896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120652" g_stop="120196" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0034N13.2" gen_strand="-" ref_id="SGN-M138-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0034N13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M138-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120652" e_stop="120196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCGATCTTCCAAGATCTTTTAGCGTCTCTAGTGGAAGATGTATAAAAGTACAATTTTCACCTTAAGAAATTTTTGTTTTTTTTTTCTTCTTTTCCCCCAAAAAAGGCTAATTATGGCACATATATAAGCAATCTCATCCTAGATTAACACAAGCACACATTTTCCAATCTGCAAAGGCAAAAGTAGCCCAAACCACATATTAAGTAGTTTATTCTGATTTTCCCCTTGTTGCAACAATCAGACTTACCTACCCATGCACCCCACCAGAAATGAACAGAAAAGTCAGATGTTAGCATCGACGCCAAAGCAGAACTTCTATTAAATTCCAGAATGAGGTCCTAGATAAAGAGATTATAAGTTATTAGAGGAATTACCTCAGAAATATAAATTGGAACTAGTACTGTATTAACACCAATTCCAAGGCCAACAAGGAATCTTCCCAAGATCATTTCTTC</genome_strand>
        <mrna_strand>CAGCGATCTTCCAAGATCTTTTAGCGTCTCTAGTGGAAGATGTATAAAAGTACAATTTTCACCTTAAGAAATTTTTGTTTTTTTTTTCTTCTTTTCCCCCAAAAAAGGCTAATTATGGCACATATATAAGCAATCTCATCCTAGATTAACACAAGCACACATTTTCCAATCTGCAAAGGCAAAAGTAGCCCAAACCACATATTAAGTAGTTTATTCTGATTTTCCCCTTGTTGCAACAATCAGACTTACCTACCCATGCACCCCACCAGAAATGAACAGAAAAGTCAGATGTTAGCATCGACGCCAAAGCAGAACTTCTATTAAATTCCAGAATGAGGTCCTAGATAAAGAGATTATAAGTTATTAGAGGAATTACCTCAGAAATATAAATTGGAACTAGTACTGTATTAACACCAATTCCAAGGCCAACAAGGAATCTTCCCAAGATCATTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="52809" PGL_stop="55516"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53201" e_stop="53725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53201" e_stop="53725" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53201" stop="53725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M430-F" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53201" stop="53724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M430-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCCTCACTCTCTAATACTTCCAAATGGGTTCTCCCTACTGATCCCAATACGACAAATTCCGTATCTCCAGATGCTCTTAATCCTCTCAGAGCTTATGTTTCTCTTCCACAAGTAACCTTTGGACCTAAAAGGTAACTTTACTGCTCTCTTTGATTGAAAGGGTACTGATTTTTTCTCTTTTCTTTTTGTTGTTTAGCTGAAATATGATTGAATTTTGGATGTTGGGTTTTAGCTAGTTTATGTATTCTAACTGAAGAATGGGTACTGAGTTTTGTTCTTCTTTTAGCTAATTAGGTGATTGAAAAAGATTGAATTTTTGATGTTGGGTTTAGCAAAATTTTAATTTTTGAACATCTTCAAATGGTGTACTAGGTTGTCTTTTTCATTTCTTATCTAAACGTTTCATATTCTTTGGAGTGAAAGAATTGATGGGAGATTACTTAGTTTGGCGAATTTGTGATTACAGATTGAAATTTTGTATGTTGGGGTTAAGTTTTGATGCACTTACAGAAAATGAAAAAGG</gDNA_template>
            <first_frame> I  P  H  S  L  I  L  P  N  G  F  S  L  L  I  P  I  R  Q  I  P  Y  L  Q  M  L  L  I  L  S  E  L  M  F  L  F  H  K  *  P  L  D  L  K  G  N  F  T  A  L  F  D  *  K  G  T  D  F  F  S  F  L  F  V  V  *  L  K  Y  D  *  I  L  D  V  G  F  *  L  V  Y  V  F  *  L  K  N  G  Y  *  V  L  F  F  F  *  L  I  R  *  L  K  K  I  E  F  L  M  L  G  L  A  K  F  *  F  L  N  I  F  K  W  C  T  R  L  S  F  S  F  L  I  *  T  F  H  I  L  W  S  E  R  I  D  G  R  L  L  S  L  A  N  L  *  L  Q  I  E  I  L  Y  V  G  V  K  F  *  C  T  Y  R  K  *  K  R </first_frame>
            <second_frame>  F  L  T  L  *  Y  F  Q  M  G  S  P  Y  *  S  Q  Y  D  K  F  R  I  S  R  C  S  *  S  S  Q  S  L  C  F  S  S  T  S  N  L  W  T  *  K  V  T  L  L  L  S  L  I  E  R  V  L  I  F  S  L  F  F  L  L  F  S  *  N  M  I  E  F  W  M  L  G  F  S  *  F  M  Y  S  N  *  R  M  G  T  E  F  C  S  S  F  S  *  L  G  D  *  K  R  L  N  F  *  C  W  V  *  Q  N  F  N  F  *  T  S  S  N  G  V  L  G  C  L  F  H  F  L  S  K  R  F  I  F  F  G  V  K  E  L  M  G  D  Y  L  V  W  R  I  C  D  Y  R  L  K  F  C  M  L  G  L  S  F  D  A  L  T  E  N  E  K   </second_frame>
            <third_frame>   S  S  L  S  N  T  S  K  W  V  L  P  T  D  P  N  T  T  N  S  V  S  P  D  A  L  N  P  L  R  A  Y  V  S  L  P  Q  V  T  F  G  P  K  R  *  L  Y  C  S  L  *  L  K  G  Y  *  F  F  L  F  S  F  C  C  L  A  E  I  *  L  N  F  G  C  W  V  L  A  S  L  C  I  L  T  E  E  W  V  L  S  F  V  L  L  L  A  N  *  V  I  E  K  D  *  I  F  D  V  G  F  S  K  I  L  I  F  E  H  L  Q  M  V  Y  *  V  V  F  F  I  S  Y  L  N  V  S  Y  S  L  E  *  K  N  *  W  E  I  T  *  F  G  E  F  V  I  T  D  *  N  F  V  C  W  G  *  V  L  M  H  L  Q  K  M  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0034N13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52809" e_stop="53333"/>
            <exon e_start="54062" e_stop="54183"/>
            <exon e_start="54575" e_stop="54666"/>
            <exon e_start="55056" e_stop="55142"/>
            <exon e_start="55216" e_stop="55516"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52809" e_stop="53333" e_length="525"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="53334" i_stop="54061" i_length="728"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54062" e_stop="54183" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.894" acc_prob="0.978">
            <gDNA_intron_boundary i_start="54184" i_stop="54574" i_length="391"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54575" e_stop="54666" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54667" i_stop="55055" i_length="389"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55056" e_stop="55142" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="55143" i_stop="55215" i_length="73"/>
          </intron>
          <exon e_serial="5" e_score="0.980">
            <gDNA_exon_boundary e_start="55216" e_stop="55516" e_length="301"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52809" stop="53333"/>
              <exon start="54062" stop="54183"/>
              <exon start="54575" stop="54666"/>
              <exon start="55056" stop="55142"/>
              <exon start="55216" stop="55516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6507" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAATATTTCTGCCTTGTCGTCTTTCTTTTTCATCATTTTTTTTTATATATATAAAGTTTTATCTTGTGTGTAAGTAAGGGAAATAGAGGTAAAAAAAAAATGTCATGGTATTATATATAACCTTGAGAGATTCAAATTCAACCAAACCAAAATCCAAGAAGAAGAAGAATGAGTTTTCTAGCAGGAAGAGTAGCAGGAAAAGAAGGAGCTTTTTTCTTTGAAGAATCCAAACATGCCGTTACCCGTTTAGCCCAAAAGATCAACAAAAATCCAACTTCTTCTCCTTCCAATTCCACTTCTCTAAATCAAGAATCATCTTCCCCTGATGTTCTTCCTGAGATTCTTCGACATTCTTTACCTTCCAAGATTTTCCATTCTCCTTCCTCTGCAGATTCCTCACTCTCTAATACTTCCAAATGGGTTCTCCCTACTGATCCCAATACGACAAATTCCGTATCTCCAGATGCTCTTAATCCTCTCAGAGCTTATGTTTCTCTTCCACAAGTAACCTTTGGACCTAAAAG : GTGGCAGTTGCCAGATACAGAAAACTCTGTACAAGCCTCAACGGCAAATGACTTGCGTCGCGATAAATACACACCGATTAATCCTGAAAAACTTAAAGCTGCAGCTGTGGGGATGTCTCAAA : TTGCAAAGGCATTTGCTATTGCCACTGCTCTTGTCTTAGGTGGTTCCGCCTTGACGTTTGGCTTGGCAGCATCCAAGCTAGAGTTGCACAAT : CCTGATGATATCCGGACGAAAGGGAAGGACATGGTTCAGCCAAGATTGGAAACATTCAAAGAACAGCTGAATCCTTTAAGGATTTGG : GCTGAAGAGAAGTCGAAAAAATGGCATTTGGAGAAAAAAGAACACATTAAAGAGAAGCCTTTGATAAAAGAGCTCTCTAAAATATTAGGTGCCAAGTCGTCAAACTAATGTCGATGCAGTTTATTGCAGATAGCTATGCATTCATCAGAATATTTTGTTTTCTTCTCTCTCACTGTGTAATTTTGAATAATATGATCTGTCAGCAGTTAGTATTTTCTATGTATCCTGCAGTACTACATTTTCTCTGTAAATTGCTGTGTTTTCTATGACGAATAAAAAAACATTTGATGAACATGTAACT</gDNA_template>
            <first_frame> I  I  F  L  P  C  R  L  S  F  S  S  F  F  F  I  Y  I  K  F  Y  L  V  C  K  *  G  K  *  R  *  K  K  N  V  M  V  L  Y  I  T  L  R  D  S  N  S  T  K  P  K  S  K  K  K  K  N  E  F  S  S  R  K  S  S  R  K  R  R  S  F  F  L  *  R  I  Q  T  C  R  Y  P  F  S  P  K  D  Q  Q  K  S  N  F  F  S  F  Q  F  H  F  S  K  S  R  I  I  F  P  *  C  S  S  *  D  S  S  T  F  F  T  F  Q  D  F  P  F  S  F  L  C  R  F  L  T  L  *  Y  F  Q  M  G  S  P  Y  *  S  Q  Y  D  K  F  R  I  S  R  C  S  *  S  S  Q  S  L  C  F  S  S  T  S  N  L  W  T  *  K  :  V  A  V  A  R  Y  R  K  L  C  T  S  L  N  G  K  *  L  A  S  R  *  I  H  T  D  *  S  *  K  T  *  S  C  S  C  G  D  V  S  N :   C  K  G  I  C  Y  C  H  C  S  C  L  R  W  F  R  L  D  V  W  L  G  S  I  Q  A  R  V  A  Q   : S  *  *  Y  P  D  E  R  E  G  H  G  S  A  K  I  G  N  I  Q  R  T  A  E  S  F  K  D  L   : G  *  R  E  V  E  K  M  A  F  G  E  K  R  T  H  *  R  E  A  F  D  K  R  A  L  *  N  I  R  C  Q  V  V  K  L  M  S  M  Q  F  I  A  D  S  Y  A  F  I  R  I  F  C  F  L  L  S  H  C  V  I  L  N  N  M  I  C  Q  Q  L  V  F  S  M  Y  P  A  V  L  H  F  L  C  K  L  L  C  F  L  *  R  I  K  K  H  L  M  N  M  *   </first_frame>
            <second_frame>  *  Y  F  C  L  V  V  F  L  F  H  H  F  F  L  Y  I  *  S  F  I  L  C  V  S  K  G  N  R  G  K  K  K  M  S  W  Y  Y  I  *  P  *  E  I  Q  I  Q  P  N  Q  N  P  R  R  R  R  M  S  F  L  A  G  R  V  A  G  K  E  G  A  F  F  F  E  E  S  K  H  A  V  T  R  L  A  Q  K  I  N  K  N  P  T  S  S  P  S  N  S  T  S  L  N  Q  E  S  S  S  P  D  V  L  P  E  I  L  R  H  S  L  P  S  K  I  F  H  S  P  S  S  A  D  S  S  L  S  N  T  S  K  W  V  L  P  T  D  P  N  T  T  N  S  V  S  P  D  A  L  N  P  L  R  A  Y  V  S  L  P  Q  V  T  F  G  P  K  R :   W  Q  L  P  D  T  E  N  S  V  Q  A  S  T  A  N  D  L  R  R  D  K  Y  T  P  I  N  P  E  K  L  K  A  A  A  V  G  M  S  Q   : I  A  K  A  F  A  I  A  T  A  L  V  L  G  G  S  A  L  T  F  G  L  A  A  S  K  L  E  L  H  N  :  P  D  D  I  R  T  K  G  K  D  M  V  Q  P  R  L  E  T  F  K  E  Q  L  N  P  L  R  I  W  :  A  E  E  K  S  K  K  W  H  L  E  K  K  E  H  I  K  E  K  P  L  I  K  E  L  S  K  I  L  G  A  K  S  S  N  *  C  R  C  S  L  L  Q  I  A  M  H  S  S  E  Y  F  V  F  F  S  L  T  V  *  F  *  I  I  *  S  V  S  S  *  Y  F  L  C  I  L  Q  Y  Y  I  F  S  V  N  C  C  V  F  Y  D  E  *  K  N  I  *  *  T  C  N  </second_frame>
            <third_frame>   N  I  S  A  L  S  S  F  F  F  I  I  F  F  Y  I  Y  K  V  L  S  C  V  *  V  R  E  I  E  V  K  K  K  C  H  G  I  I  Y  N  L  E  R  F  K  F  N  Q  T  K  I  Q  E  E  E  E  *  V  F  *  Q  E  E  *  Q  E  K  K  E  L  F  S  L  K  N  P  N  M  P  L  P  V  *  P  K  R  S  T  K  I  Q  L  L  L  L  P  I  P  L  L  *  I  K  N  H  L  P  L  M  F  F  L  R  F  F  D  I  L  Y  L  P  R  F  S  I  L  L  P  L  Q  I  P  H  S  L  I  L  P  N  G  F  S  L  L  I  P  I  R  Q  I  P  Y  L  Q  M  L  L  I  L  S  E  L  M  F  L  F  H  K  *  P  L  D  L  K   : G  G  S  C  Q  I  Q  K  T  L  Y  K  P  Q  R  Q  M  T  C  V  A  I  N  T  H  R  L  I  L  K  N  L  K  L  Q  L  W  G  C  L  K  :  L  Q  R  H  L  L  L  P  L  L  L  S  *  V  V  P  P  *  R  L  A  W  Q  H  P  S  *  S  C  T  I :   L  M  I  S  G  R  K  G  R  T  W  F  S  Q  D  W  K  H  S  K  N  S  *  I  L  *  G  F  G :   L  K  R  S  R  K  N  G  I  W  R  K  K  N  T  L  K  R  S  L  *  *  K  S  S  L  K  Y  *  V  P  S  R  Q  T  N  V  D  A  V  Y  C  R  *  L  C  I  H  Q  N  I  L  F  S  S  L  S  L  C  N  F  E  *  Y  D  L  S  A  V  S  I  F  Y  V  S  C  S  T  T  F  S  L  *  I  A  V  F  S  M  T  N  K  K  T  F  D  E  H  V  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0034N13.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52936" stop="53333"/>
                    <exon start="54062" stop="54183"/>
                    <exon start="54575" stop="54666"/>
                    <exon start="55056" stop="55142"/>
                    <exon start="55216" stop="55323"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIQIQPNQNPRRRRMSFLAGRVAGKEGAFFFEESKHAVTRLAQKINKNPTSSPSNSTSLNQESSSPDVLPEILRHSLPSKIFHSPSSADSSLSNTSKWVLPTDPNTTNSVSPDALNPLRAYVSLPQVTFGPKRWQLPDTENSVQASTANDLRRDKYTPINPEKLKAAAVGMSQIAKAFAIATALVLGGSALTFGLAASKLELHNPDDIRTKGKDMVQPRLETFKEQLNPLRIWAEEKSKKWHLEKKEHIKEKPLIKELSKILGAKSSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="79438" PGL_stop="79933"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79438" e_stop="79701"/>
            <exon e_start="79781" e_stop="79933"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79438" e_stop="79701" e_length="264"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="79702" i_stop="79780" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79781" e_stop="79933" e_length="153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79438" stop="79701"/>
              <exon start="79781" stop="79933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2221" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATATCTCTTTCAAAAGTTGCAAAAATAAGTAATAAGTAATATAAATGGCTAAATTTGGCGATTTGGGTAATCTTCTAGTGTTGTGTATACTACTAGGAATAGTTGGTTCTAGCTATGGTCAGTTGCAGCTCAACTTCTATGCAAAGAGCTGTCCGCAAGCAGAAAAGATAATTCAAGATTATGTGTATAAGCAAATCCCAAAGGCTCCGTCTCTTGCACCTGCGTTGCTCAGAATGCATTTCCACGATTGCTTTGTCAGG : GGTTGTGATGGTTCTGTACTCCTGAATTTCACTTCGAGCACTAAAAACCAGACTGAAAAAGTGGCTGTTCCTAATCAAACGCTGAGAGGCTTCTCATTTATCGATGGTGTGAAGAAAGCATTGGAAGCTGAATGCCCTGGAGTTGTGTCATGT</gDNA_template>
            <first_frame> K  N  I  S  F  K  S  C  K  N  K  *  *  V  I  *  M  A  K  F  G  D  L  G  N  L  L  V  L  C  I  L  L  G  I  V  G  S  S  Y  G  Q  L  Q  L  N  F  Y  A  K  S  C  P  Q  A  E  K  I  I  Q  D  Y  V  Y  K  Q  I  P  K  A  P  S  L  A  P  A  L  L  R  M  H  F  H  D  C  F  V  R  :  G  C  D  G  S  V  L  L  N  F  T  S  S  T  K  N  Q  T  E  K  V  A  V  P  N  Q  T  L  R  G  F  S  F  I  D  G  V  K  K  A  L  E  A  E  C  P  G  V  V  S  C </first_frame>
            <second_frame>  K  I  S  L  S  K  V  A  K  I  S  N  K  *  Y  K  W  L  N  L  A  I  W  V  I  F  *  C  C  V  Y  Y  *  E  *  L  V  L  A  M  V  S  C  S  S  T  S  M  Q  R  A  V  R  K  Q  K  R  *  F  K  I  M  C  I  S  K  S  Q  R  L  R  L  L  H  L  R  C  S  E  C  I  S  T  I  A  L  S  G :   V  V  M  V  L  Y  S  *  I  S  L  R  A  L  K  T  R  L  K  K  W  L  F  L  I  K  R  *  E  A  S  H  L  S  M  V  *  R  K  H  W  K  L  N  A  L  E  L  C  H   </second_frame>
            <third_frame>   K  Y  L  F  Q  K  L  Q  K  *  V  I  S  N  I  N  G  *  I  W  R  F  G  *  S  S  S  V  V  Y  T  T  R  N  S  W  F  *  L  W  S  V  A  A  Q  L  L  C  K  E  L  S  A  S  R  K  D  N  S  R  L  C  V  *  A  N  P  K  G  S  V  S  C  T  C  V  A  Q  N  A  F  P  R  L  L  C  Q   : G  L  *  W  F  C  T  P  E  F  H  F  E  H  *  K  P  D  *  K  S  G  C  S  *  S  N  A  E  R  L  L  I  Y  R  W  C  E  E  S  I  G  S  *  M  P  W  S  C  V  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0034N13.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79486" stop="79701"/>
                    <exon start="79781" stop="79933"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAKFGDLGNLLVLCILLGIVGSSYGQLQLNFYAKSCPQAEKIIQDYVYKQIPKAPSLAPALLRMHFHDCFVRGCDGSVLLNFTSSTKNQTEKVAVPNQTLRGFSFIDGVKKALEAECPGVVSC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="102937" PGL_stop="103448"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102937" e_stop="103448"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102937" e_stop="103448" e_length="512"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102937" stop="103443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M434-R" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102950" stop="103448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M434-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGCAGAGTCATCAAGAATGGCTGCCTTGTCAAGACACCTATTTGATAACGACTACTGGTTAGCTTCTATTTATATCAAGTAATTGTTTGATTTCTTAATTGTTTACTAAAACTACTACATTCAGGTCAATCCTGGCCGTATATGTTAAAATTTCAGCAACTTACGACTACATTATGATGCAATTGCCTGTGAATATAGTATCGTGATGTCTATTGCCCATTTTGTGAACTCTCTCTGGTATGACTAGATTTGCCTAGCGATACTGGGCTTCCATCCTATGTTGGGATGGTCTAGTCCATGATCGACCATGCTTATTGTTGTTTTGCATCGATATTAGATAGTAATAGTCTTATTTTGGTTACTACAGTTGGTTAGATAAGCTTACCTCAACATATGTGTATGTGGGACTTTGGCATTGTGATATTCATTCAAGAAGCCAGTATCAGAAGGGTAACTAAGCTTTCTCTTCCTCCAAGCTAAAAGCAGAACCCTCCATATGATAGTCAAAGGA</gDNA_template>
            <first_frame> L  Q  S  H  Q  E  W  L  P  C  Q  D  T  Y  L  I  T  T  T  G  *  L  L  F  I  S  S  N  C  L  I  S  *  L  F  T  K  T  T  T  F  R  S  I  L  A  V  Y  V  K  I  S  A  T  Y  D  Y  I  M  M  Q  L  P  V  N  I  V  S  *  C  L  L  P  I  L  *  T  L  S  G  M  T  R  F  A  *  R  Y  W  A  S  I  L  C  W  D  G  L  V  H  D  R  P  C  L  L  L  F  C  I  D  I  R  *  *  *  S  Y  F  G  Y  Y  S  W  L  D  K  L  T  S  T  Y  V  Y  V  G  L  W  H  C  D  I  H  S  R  S  Q  Y  Q  K  G  N  *  A  F  S  S  S  K  L  K  A  E  P  S  I  *  *  S  K   </first_frame>
            <second_frame>  C  R  V  I  K  N  G  C  L  V  K  T  P  I  *  *  R  L  L  V  S  F  Y  L  Y  Q  V  I  V  *  F  L  N  C  L  L  K  L  L  H  S  G  Q  S  W  P  Y  M  L  K  F  Q  Q  L  T  T  T  L  *  C  N  C  L  *  I  *  Y  R  D  V  Y  C  P  F  C  E  L  S  L  V  *  L  D  L  P  S  D  T  G  L  P  S  Y  V  G  M  V  *  S  M  I  D  H  A  Y  C  C  F  A  S  I  L  D  S  N  S  L  I  L  V  T  T  V  G  *  I  S  L  P  Q  H  M  C  M  W  D  F  G  I  V  I  F  I  Q  E  A  S  I  R  R  V  T  K  L  S  L  P  P  S  *  K  Q  N  P  P  Y  D  S  Q  R  </second_frame>
            <third_frame>   A  E  S  S  R  M  A  A  L  S  R  H  L  F  D  N  D  Y  W  L  A  S  I  Y  I  K  *  L  F  D  F  L  I  V  Y  *  N  Y  Y  I  Q  V  N  P  G  R  I  C  *  N  F  S  N  L  R  L  H  Y  D  A  I  A  C  E  Y  S  I  V  M  S  I  A  H  F  V  N  S  L  W  Y  D  *  I  C  L  A  I  L  G  F  H  P  M  L  G  W  S  S  P  *  S  T  M  L  I  V  V  L  H  R  Y  *  I  V  I  V  L  F  W  L  L  Q  L  V  R  *  A  Y  L  N  I  C  V  C  G  T  L  A  L  *  Y  S  F  K  K  P  V  S  E  G  *  L  S  F  L  F  L  Q  A  K  S  R  T  L  H  M  I  V  K  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0034N13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="118909" PGL_stop="119385"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118909" e_stop="119385"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="118909" e_stop="119385" e_length="477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118909" stop="119385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M138-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCACATTACATGTACAAACCATCTCAAGCGATCTTCTCTCATTTTATCCTCAATGTGTGTTAGTTGCACCTGTTGCGGATGTGATCATTTCTAATCTTGTATGTACACACAACCATCTCAACATCCACATCTTTTATTATACTCATCTTGTGGAGTGTTGGATTTTACCGGCCCAACTCACTTGCATATAAAATTATTGCTCTTACAATTATTCTATAAAATCTTTCTTTCACTCCGGTAGGAATTCTTCTATGAGGTAACACCCTGACAGCTCTTCTTTATTTCTACCATCCTATTTTGATTTAATATGTATCATTCTTTTTTACATAAGGTACTGTTGTATTCCTCAGCATTAAGGAATGCTGGCCACCTCCAAAAATTGTTACAGAAACAGAAAATAGAAACTTCATTTACAAAGCTCCTAAGAACTCTACAACCCCCCTCTTCTGATCCAGCAGCTTAGTAGATTACCTGTG</gDNA_template>
            <first_frame> S  T  L  H  V  Q  T  I  S  S  D  L  L  S  F  Y  P  Q  C  V  L  V  A  P  V  A  D  V  I  I  S  N  L  V  C  T  H  N  H  L  N  I  H  I  F  Y  Y  T  H  L  V  E  C  W  I  L  P  A  Q  L  T  C  I  *  N  Y  C  S  Y  N  Y  S  I  K  S  F  F  H  S  G  R  N  S  S  M  R  *  H  P  D  S  S  S  L  F  L  P  S  Y  F  D  L  I  C  I  I  L  F  Y  I  R  Y  C  C  I  P  Q  H  *  G  M  L  A  T  S  K  N  C  Y  R  N  R  K  *  K  L  H  L  Q  S  S  *  E  L  Y  N  P  P  L  L  I  Q  Q  L  S  R  L  P  V </first_frame>
            <second_frame>  A  H  Y  M  Y  K  P  S  Q  A  I  F  S  H  F  I  L  N  V  C  *  L  H  L  L  R  M  *  S  F  L  I  L  Y  V  H  T  T  I  S  T  S  T  S  F  I  I  L  I  L  W  S  V  G  F  Y  R  P  N  S  L  A  Y  K  I  I  A  L  T  I  I  L  *  N  L  S  F  T  P  V  G  I  L  L  *  G  N  T  L  T  A  L  L  Y  F  Y  H  P  I  L  I  *  Y  V  S  F  F  F  T  *  G  T  V  V  F  L  S  I  K  E  C  W  P  P  P  K  I  V  T  E  T  E  N  R  N  F  I  Y  K  A  P  K  N  S  T  T  P  L  F  *  S  S  S  L  V  D  Y  L   </second_frame>
            <third_frame>   H  I  T  C  T  N  H  L  K  R  S  S  L  I  L  S  S  M  C  V  S  C  T  C  C  G  C  D  H  F  *  S  C  M  Y  T  Q  P  S  Q  H  P  H  L  L  L  Y  S  S  C  G  V  L  D  F  T  G  P  T  H  L  H  I  K  L  L  L  L  Q  L  F  Y  K  I  F  L  S  L  R  *  E  F  F  Y  E  V  T  P  *  Q  L  F  F  I  S  T  I  L  F  *  F  N  M  Y  H  S  F  L  H  K  V  L  L  Y  S  S  A  L  R  N  A  G  H  L  Q  K  L  L  Q  K  Q  K  I  E  T  S  F  T  K  L  L  R  T  L  Q  P  P  S  S  D  P  A  A  *  *  I  T  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0034N13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="120652" PGL_stop="120196"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120652" e_stop="120196"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120652" e_stop="120196" e_length="457"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120652" stop="120196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M138-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCGATCTTCCAAGATCTTTTAGCGTCTCTAGTGGAAGATGTATAAAAGTACAATTTTCACCTTAAGAAATTTTTGTTTTTTTTTTCTTCTTTTCCCCCAAAAAAGGCTAATTATGGCACATATATAAGCAATCTCATCCTAGATTAACACAAGCACACATTTTCCAATCTGCAAAGGCAAAAGTAGCCCAAACCACATATTAAGTAGTTTATTCTGATTTTCCCCTTGTTGCAACAATCAGACTTACCTACCCATGCACCCCACCAGAAATGAACAGAAAAGTCAGATGTTAGCATCGACGCCAAAGCAGAACTTCTATTAAATTCCAGAATGAGGTCCTAGATAAAGAGATTATAAGTTATTAGAGGAATTACCTCAGAAATATAAATTGGAACTAGTACTGTATTAACACCAATTCCAAGGCCAACAAGGAATCTTCCCAAGATCATTTCTTC</gDNA_template>
            <first_frame> Q  R  S  S  K  I  F  *  R  L  *  W  K  M  Y  K  S  T  I  F  T  L  R  N  F  C  F  F  F  L  L  F  P  Q  K  R  L  I  M  A  H  I  *  A  I  S  S  *  I  N  T  S  T  H  F  P  I  C  K  G  K  S  S  P  N  H  I  L  S  S  L  F  *  F  S  P  C  C  N  N  Q  T  Y  L  P  M  H  P  T  R  N  E  Q  K  S  Q  M  L  A  S  T  P  K  Q  N  F  Y  *  I  P  E  *  G  P  R  *  R  D  Y  K  L  L  E  E  L  P  Q  K  Y  K  L  E  L  V  L  Y  *  H  Q  F  Q  G  Q  Q  G  I  F  P  R  S  F  L  </first_frame>
            <second_frame>  S  D  L  P  R  S  F  S  V  S  S  G  R  C  I  K  V  Q  F  S  P  *  E  I  F  V  F  F  F  F  F  S  P  K  K  G  *  L  W  H  I  Y  K  Q  S  H  P  R  L  T  Q  A  H  I  F  Q  S  A  K  A  K  V  A  Q  T  T  Y  *  V  V  Y  S  D  F  P  L  V  A  T  I  R  L  T  Y  P  C  T  P  P  E  M  N  R  K  V  R  C  *  H  R  R  Q  S  R  T  S  I  K  F  Q  N  E  V  L  D  K  E  I  I  S  Y  *  R  N  Y  L  R  N  I  N  W  N  *  Y  C  I  N  T  N  S  K  A  N  K  E  S  S  Q  D  H  F  F </second_frame>
            <third_frame>   A  I  F  Q  D  L  L  A  S  L  V  E  D  V  *  K  Y  N  F  H  L  K  K  F  L  F  F  F  S  S  F  P  P  K  K  A  N  Y  G  T  Y  I  S  N  L  I  L  D  *  H  K  H  T  F  S  N  L  Q  R  Q  K  *  P  K  P  H  I  K  *  F  I  L  I  F  P  L  L  Q  Q  S  D  L  P  T  H  A  P  H  Q  K  *  T  E  K  S  D  V  S  I  D  A  K  A  E  L  L  L  N  S  R  M  R  S  *  I  K  R  L  *  V  I  R  G  I  T  S  E  I  *  I  G  T  S  T  V  L  T  P  I  P  R  P  T  R  N  L  P  K  I  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0034N13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 19 chains have been computed
$ 
$ memory statistics:
$ 15520 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 1940 bytes was the average size of a spliced alignment
$ 10480 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2096 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 19 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 08:40:44
-->
