<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:49:33"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722468" ref_strand="+" ref_description="SGN-E722468 [FC17BE03]">
      <seq>aatcggccgaaatgaccaaaacttttattatattattatagttataactctttttggataatattaaatgtttaaattgctagaaaaaaatatgtgggctagaattttattacttctttttgtgttttcacttggagcttttcttgtttgtggtagaaatttaccaagtgaaaatgagtctcttgttgaaaaaaaatatggagttactgattatcaaggtggattaaatgataatattggagctggtggatttgctgctggtgagccaactgggccatctggaccaactgggccgggtctaggaggatccattagtggtggcgttagcgccggagtcggaggaaggttgggtatcggagctgggcccgtaagtggaggagctgaaggtagagttggcgttgggatcggtgccggagccggtgcaggtgtcggcgctggtcctggcggcatgggcggtggcgctgccggcagtccacctggcattggcataggtggcagtggcggatttagtggtggagtaagcggcagcggaaaaattggagctggtgtaggcggcagtggcggtgttggcaataatgttggcggtggagcaggcgatcatggcagtggaactggcggagggtttggcggccctggtagtgtaagcggcggagggtttggcggccctggtagtggaagcggcggagggtacggcagtggatatggcggcggatggccgtgaaattaatgtaaacgtaagtagctgtggcgttagccattgcattaatattttagtagttgcatttttaatttcatgttatgtgctttgtgaaatgttgtgagtaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="944" stop="3093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1250" g_stop="1492" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="260" r_length="243" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1493" i_stop="2226" i_length="734">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2227" g_stop="2793" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="828" r_length="568" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E722468" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1250" e_stop="1492"/>
          <exon e_start="2227" e_stop="2793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTTTTATTATATTATTATAGTTATAACTCTTTTTGGATAATATTAAATGTTTAAATTGCTAGAAAAAAATATGTGGGCTAGAATTTTATTACTTCTTTTTGTGTTTTCACTTGGAGCTTTTCTTGTTTGTGGTAGAAATTTACCAAGTGAAAATGAGTCTCTTGTTGAAAAAAAATATGGAGTTACTGATTATCAAGGTGGATTAGATGATAATATTGGAGCTGGTGGATTTGCTGCTGGTAATGGAATTTAGAAAACTTCATGTATAAAAGTACTTTGAAATTTTTAATATTTTACTAAAATCGAAGATAAATTTAAATTTTTTATAAATTAAGAGATATGATGGTTACAATCTCCAAAGAACCTTCTTTTAACTCGATATATTATTCGTGAGAGTTAGTGCAACACGTAATATTTAATAAGAAAGGTTAAAAATTTATTTTTTTGTCCATAAAAAAGATTAGAGATCGATTTTTTTTTATCTAACACTTGTTTAGTTGAGTTTGTTGCATCTAACTAGCCTGTAAATTACATTTTGTTAAGTTAGTGCTAATGATAGTATCTATAATTTGAAAGGTTAGAGATAGATTCTCCTTATTAACACTTTTTTTATTTGAGTTTGTTGCTTCGTATTAATATCGTTTCCGTTTCATTTTATATGTCACATTTCGGATTTCAAGAATTAAATAAGTCTATTTTTTATCGTATATTTTTCATAAATCTTTTCAATATTTTAAATTATCAATTATTATAATTTTTAATATTTTTTTACTTAATTTACAAATACATAAGTTTCATTTCAAGAAAATTAAAAATTTCATGCGCAAATTTTTGACTGACAAAATATAAAATATGTTATATAAATTGAGACAAAAAAAATATAATTTAGTTGCTACATTATTTTGTTAGCAATTAGACGATTTAACGATAAAATTCATAGCTAATTTCATAATTCGTTGTGTTTATGAAACAGGTGAGCCAACTGGGCCATCTGGACCAACTGGGCCGGGTCTAGGAGGATCCATTAGTGGTGGCGTTAGCGCCGGAGTCGGAGGAAGGTTGGGTATCGGAGCTGGGCCCGTAAGTGGAGGAGCTGAAGGTAGAGTTGGCGTTGGGATCGGTGCCGGAGCCGGTGCAGGTGTCGGCGCTGGTCCTGGCGGCATGGGCGGTGGCGCTGCCGGCAGTCCACCTGGCATTGGCATAGGTGGCAGTGGCGGAGTTAGTGGTGGAGTAAGCGGCAGCGGAAGAATTGGAGCTGGTGTAGGCGGCAGTGGCGGTGTTGGCGATAATGTTGGCGGTGGAGCAGGCGATCATGGCAGTGGAACTGGCGGAGGGTTTGGCGGCCCTGGTAGTGTAAGCGGCGGAGGGTTTGGCGGCCCTGGTAGTGGAAGCGGCGGAGGGTACGGCAGTGGATATGGCGGCGGATGGCCGTGAAATTAATGTAAACGTAAGTAGCTGTGGCGTTAGCCATTGCATTAATATTTTAGTAGTTGCA-TTTTAATTTCATGTTATGTGCTTTGTGAAATGTTGTGAGTAGGAT</genome_strand>
        <mrna_strand>AAAACTTTTATTATATTATTATAGTTATAACTCTTTTTGGATAATATTAAATGTTTAAATTGCTAGAAAAAAATATGTGGGCTAGAATTTTATTACTTCTTTTTGTGTTTTCACTTGGAGCTTTTCTTGTTTGTGGTAGAAATTTACCAAGTGAAAATGAGTCTCTTGTTGAAAAAAAATATGGAGTTACTGATTATCAAGGTGGATTAAATGATAATATTGGAGCTGGTGGATTTGCTGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCCAACTGGGCCATCTGGACCAACTGGGCCGGGTCTAGGAGGATCCATTAGTGGTGGCGTTAGCGCCGGAGTCGGAGGAAGGTTGGGTATCGGAGCTGGGCCCGTAAGTGGAGGAGCTGAAGGTAGAGTTGGCGTTGGGATCGGTGCCGGAGCCGGTGCAGGTGTCGGCGCTGGTCCTGGCGGCATGGGCGGTGGCGCTGCCGGCAGTCCACCTGGCATTGGCATAGGTGGCAGTGGCGGATTTAGTGGTGGAGTAAGCGGCAGCGGAAAAATTGGAGCTGGTGTAGGCGGCAGTGGCGGTGTTGGCAATAATGTTGGCGGTGGAGCAGGCGATCATGGCAGTGGAACTGGCGGAGGGTTTGGCGGCCCTGGTAGTGTAAGCGGCGGAGGGTTTGGCGGCCCTGGTAGTGGAAGCGGCGGAGGGTACGGCAGTGGATATGGCGGCGGATGGCCGTGAAATTAATGTAAACGTAAGTAGCTGTGGCGTTAGCCATTGCATTAATATTTTAGTAGTTGCATTTTTAATTTCATGTTATGTGCTTTGTGAAATGTTGTGAGTAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555563" ref_strand="-" ref_description="SGN-E555563 [cTSC-5-H1]">
      <seq>aagttatnttttttttttttttttttttttttttttttttttttgataccaaacactaaattaaattacactaatttattaaccaacattacattatatcattacatcctactcacaacatttcacaaagcacataacatgaaattaaaatgcaactactaaaatattaatgcaatggctaacgccacagctacttacgtttacattaatttcacggccatccgccgccatatccactgccgtaccctccgccgcttccactaccagggccgccaaaccctccgccgcttacactaccagggccgccaaaccctccgccagttccactgccatgatcgcctgctccaccgccaacattatcgccaacaccgccactgccgcctacaccagctccaattcttccgctgccgcttactccaccactaactccgccactgccacctatgccaatgccaggtggactgccggcagcgccaccgcccatgccgccaggaccagcgccgacacctgcaccggctccggcaccgatcccaacgccaactctaccttcagctcctccacttacgggcccagctccgatacccaaccttcctccgactccggcgctaacgccaccactaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="89951" stop="1975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4417" g_stop="4378" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4377" i_stop="2859" i_length="1519">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2858" g_stop="2275" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="624" r_length="584" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E555563" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555563" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4417" e_stop="4378"/>
          <exon e_start="2858" e_stop="2275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATATATATATATATATATATACTAAATTTATCATATAATAAAATTATATTTATTTACGACAATTTATAAAATATACAAATTAAAGATTAGAATAATTGTCATCCTATTATAATTTTTTAATCGTGGCTCCTCATTTCATAAAAGTCACGCATATGACCTTCACCTTATGTTTAATAACCTTTTTTAATGTTCGATCAAATTATTTACATATATTTTAAAACAAAGGTGGAAGTATAAAATATAAAATAATGTCTCAATCATTAAGTTGGGTCCATAATAGGAATTATTGTAAATCATAAGTTTATTTCATCAATTTCATCGTATTTTATACTATACAATTATGATACTATTTTCATTTTAATTTATTTGTTCAATTTTATAACTTAATATGAAATTTAATAAAGTAATAAAATTTCTAAATTTTACCATCTTAAACATATCATATGGTAAGTTAAATTTAAAAAATTGACAATAAAAAAAAAGAAAATAATAACTTATTATTTTTTTTCAAGCTAAATTAACAATAACAATACAAATATACAACATCACAAGAAAATATTATGTATAATGTTAATTTTATTGCAAAAAAACATTATTAATTAATAAATTTTATGTTTGTTGTCAATTTTTTCGCGATCTTCTTTATTTATGTAAATATGAAATCAATAATGTAAGTAAGGTCATACTAATCATATTCTTTAATTACAATTTCGTTAATTACATCTTTGCTTTTAATGTGATTACTTGTTCACCACTAATTATCGGTCCTAATTATTCTACAATCATATAATATAATACATTGATAATGTGGTTGTAAAGAGAGAGACCTTTTCTCAAAGGAAATAGAATTAAAGAATGAAAATATAATAAACATTAAACTATTTGACTTATGAAATTTAAACTGAATATAAAATTAAAATAAATAAAATATCTTAAACAATTTTCAATACAACGTTTTAAGTTGAGTTTTTTTTTTTTTTAATGCTTGTATAATCTTCTCATCTTCGAGATTTATTGGCTCAAACCTTTTCAAACTTCATGGTCCATAAAATTCATTAAATGAGGAAAAACATCCTACTAAGAATATTTGTTTTTACATCCTTAAAAGCTCAATAAACTTACAATTCCCTAGAAATTTTTTTTTTTTGAGTTAAATTATAGAGTATACATTTTAATTGATATTTTATATGTGTTTTTTGTTATATTAATATAAAAATTCAATTTATAATATTTTTTGTATTTTCAATATCTATATTATTATTTTAATATATCAATTATTTACTTCATTTAATTTACTCTCAAAATTATGATCTATTTATTTTAAATTAAGTTTTTATCTTTAAAAAAATACTATCTTGATATAATAAGGAGATAAACTCTGAAATTAATCGTTGTGATGGAATAACATCCTTCATCAAGAGATTTCAGGTTTGAGCCGTCTTTATTAAGAATCACTTTTCTTCTAATATGAAATTTTTCGATACAAATTCTAATTTAATCAAGCTCTGATACCAAACACTAAATTAAATTACACTAATTTATTAACCAACATTACATTATATCATTACATCCTACTCACAACATTTCACAAAGCACATAACATGAAATTAAAATGCAACTACTAAAATATTAATGCAATGGCTAACGCCACAGCTACTTACGTTTACATTAATTTCACGGCCATCCGCCGCCATATCCACTGCCGTACCCTCCGCCGCTTCCACTACCAGGGCCGCCAAACCCTCCGCCGCTTACACTACCAGGGCCGCCAAACCCTCCGCCAGTTCCACTGCCATGATCGCCTGCTCCACCGCCAACATTATCGCCAACACCGCCACTGCCGCCTACACCAGCTCCAATTCTTCCGCTGCCGCTTACTCCACCACTAACTCCGCCACTGCCACCTATGCCAATGCCAGGTGGACTGCCGGCAGCGCCACCGCCCATGCCGCCAGGACCAGCGCCGACACCTGCACCGGCTCCGGCACCGATCCCAACGCCAACTCTACCTTCAGCTCCTCCACTTACGGGCCCAGCTCCGATACCCAACCTTCCTCCGACTCCGGCGCTAACGCCACCACTAATGG</genome_strand>
        <mrna_strand>AAGTTATNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGATACCAAACACTAAATTAAATTACACTAATTTATTAACCAACATTACATTATATCATTACATCCTACTCACAACATTTCACAAAGCACATAACATGAAATTAAAATGCAACTACTAAAATATTAATGCAATGGCTAACGCCACAGCTACTTACGTTTACATTAATTTCACGGCCATCCGCCGCCATATCCACTGCCGTACCCTCCGCCGCTTCCACTACCAGGGCCGCCAAACCCTCCGCCGCTTACACTACCAGGGCCGCCAAACCCTCCGCCAGTTCCACTGCCATGATCGCCTGCTCCACCGCCAACATTATCGCCAACACCGCCACTGCCGCCTACACCAGCTCCAATTCTTCCGCTGCCGCTTACTCCACCACTAACTCCGCCACTGCCACCTATGCCAATGCCAGGTGGACTGCCGGCAGCGCCACCGCCCATGCCGCCAGGACCAGCGCCGACACCTGCACCGGCTCCGGCACCGATCCCAACGCCAACTCTACCTTCAGCTCCTCCACTTACGGGCCCAGCTCCGATACCCAACCTTCCTCCGACTCCGGCGCTAACGCCACCACTAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554882" ref_strand="+" ref_description="SGN-E554882 [cTSC-5-L19]">
      <seq>ccattagtggtggcgttagcgccggagtcggaggaaggttgggtatcggagctgggcccgtaagtggaggagctgaaggtagagttggcgttgggatcggtgccggagccggtgcaggtgtcggcgctggtcctggcggcatgggcggtggcgctgccggcagtccacctggcattggcataggtggcagtggcggagttagtggtggagtaagcggcagcggaagaattggagctggtgtaggcggcagtggcggtgttggcgataatgttggcggtggagcaggcgatcatggcagtggaactggcggagggtttggcggccctggtagtgtaagcggcggagggtttggcggccctggtagtggaagcggcggagggtacggcagtggatatggcggcggatggccgtgaaattaatgtaaacgtaagtagctgtggcgttagccattgcattaatattttagtagttgcattttaatttcatgttatgtgctttgtgaaatgttgtgagtaggatgtaatgatataatgtaatgttggttaataaattagtgtaatttaatttagtgtttggtatctaatataataaaaaacttatgcaagatgatctaatttttaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="1975" stop="3154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2275" g_stop="2857" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E554882" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2275" e_stop="2857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTAGTGGTGGCGTTAGCGCCGGAGTCGGAGGAAGGTTGGGTATCGGAGCTGGGCCCGTAAGTGGAGGAGCTGAAGGTAGAGTTGGCGTTGGGATCGGTGCCGGAGCCGGTGCAGGTGTCGGCGCTGGTCCTGGCGGCATGGGCGGTGGCGCTGCCGGCAGTCCACCTGGCATTGGCATAGGTGGCAGTGGCGGAGTTAGTGGTGGAGTAAGCGGCAGCGGAAGAATTGGAGCTGGTGTAGGCGGCAGTGGCGGTGTTGGCGATAATGTTGGCGGTGGAGCAGGCGATCATGGCAGTGGAACTGGCGGAGGGTTTGGCGGCCCTGGTAGTGTAAGCGGCGGAGGGTTTGGCGGCCCTGGTAGTGGAAGCGGCGGAGGGTACGGCAGTGGATATGGCGGCGGATGGCCGTGAAATTAATGTAAACGTAAGTAGCTGTGGCGTTAGCCATTGCATTAATATTTTAGTAGTTGCATTTTAATTTCATGTTATGTGCTTTGTGAAATGTTGTGAGTAGGATGTAATGATATAATGTAATGTTGGTTAATAAATTAGTGTAATTTAATTTAGTGTTTGGTATCAGA</genome_strand>
        <mrna_strand>CCATTAGTGGTGGCGTTAGCGCCGGAGTCGGAGGAAGGTTGGGTATCGGAGCTGGGCCCGTAAGTGGAGGAGCTGAAGGTAGAGTTGGCGTTGGGATCGGTGCCGGAGCCGGTGCAGGTGTCGGCGCTGGTCCTGGCGGCATGGGCGGTGGCGCTGCCGGCAGTCCACCTGGCATTGGCATAGGTGGCAGTGGCGGAGTTAGTGGTGGAGTAAGCGGCAGCGGAAGAATTGGAGCTGGTGTAGGCGGCAGTGGCGGTGTTGGCGATAATGTTGGCGGTGGAGCAGGCGATCATGGCAGTGGAACTGGCGGAGGGTTTGGCGGCCCTGGTAGTGTAAGCGGCGGAGGGTTTGGCGGCCCTGGTAGTGGAAGCGGCGGAGGGTACGGCAGTGGATATGGCGGCGGATGGCCGTGAAATTAATGTAAACGTAAGTAGCTGTGGCGTTAGCCATTGCATTAATATTTTAGTAGTTGCATTTTAATTTCATGTTATGTGCTTTGTGAAATGTTGTGAGTAGGATGTAATGATATAATGTAATGTTGGTTAATAAATTAGTGTAATTTAATTTAGTGTTTGGTATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714625" ref_strand="+" ref_description="SGN-E714625 [FB11DH10]">
      <seq>cggtgcctgagccggtgcaggtgtcggcgctggtcctggcggcatgggcggtggcgctgccggcagtccacctggcattggcataggtggcagtggcggagttagtggtggagtaagcggcagcggaagaattggagctggtgtaggcggcagtggcggtgttggcgataatgttggcggtggagcaggcgatcatggcagtggaactggcggagggtttggcggccctggtagtgtaagcggcggagggtttggcggccctggtagtggaagcggcggagggtacggcagtggatatggcggcggatggccgtgaaattaatgtaaacgtaagtagctgtggcgttagccattgcattaatattttagtagttgcattttaatttcatgttatgtgctttgtgaaatgttgtgagtaggatgtaatgatataatgtaatgttggttaataaattagtgtaatttaatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="2072" stop="89929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2372" g_stop="2842" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2843" i_stop="3210" i_length="368">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3211" g_stop="3226" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="487" r_length="16" r_score="0.812"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E714625" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2372" e_stop="2842"/>
          <exon e_start="3211" e_stop="3226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGCCGGAGCCGGTGCAGGTGTCGGCGCTGGTCCTGGCGGCATGGGCGGTGGCGCTGCCGGCAGTCCACCTGGCATTGGCATAGGTGGCAGTGGCGGAGTTAGTGGTGGAGTAAGCGGCAGCGGAAGAATTGGAGCTGGTGTAGGCGGCAGTGGCGGTGTTGGCGATAATGTTGGCGGTGGAGCAGGCGATCATGGCAGTGGAACTGGCGGAGGGTTTGGCGGCCCTGGTAGTGTAAGCGGCGGAGGGTTTGGCGGCCCTGGTAGTGGAAGCGGCGGAGGGTACGGCAGTGGATATGGCGGCGGATGGCCGTGAAATTAATGTAAACGTAAGTAGCTGTGGCGTTAGCCATTGCATTAATATTTTAGTAGTTGCATTTTAATTTCATGTTATGTGCTTTGTGAAATGTTGTGAGTAGGATGTAATGATATAATGTAATGTTGGTTAATAAATTAGTGTAATTTAATTTAGTGTTTGGTATCAGAGCTTGATTAAATTAGAATTTGTATCGAAAAATTTCATATTAGAAGAAAAGTGATTCTTAATAAAGACGGCTCAAACCTGAAATCTCTTGATGAAGGATGTTATTCCATCACAACGATTAATTTCAGAGTTTATCTCCTTATTATATCAAGATAGTATTTTTTTAAAGATAAAAACTTAATTTAAAATAAATAGATCATAATTTTGAGAGTAAATTAAATGAAGTAAATAATTGATATATTAAAATAATAATATAGATATTGAAAATACAAAAAATATTATAAATTGAATTTTTATATTAATATAACAAAAAACACATATAAAATATCAATTAAAATGTATACTCTATAATTTAACTCAAAAAAAAAAAA</genome_strand>
        <mrna_strand>CGGTGCCTGAGCCGGTGCAGGTGTCGGCGCTGGTCCTGGCGGCATGGGCGGTGGCGCTGCCGGCAGTCCACCTGGCATTGGCATAGGTGGCAGTGGCGGAGTTAGTGGTGGAGTAAGCGGCAGCGGAAGAATTGGAGCTGGTGTAGGCGGCAGTGGCGGTGTTGGCGATAATGTTGGCGGTGGAGCAGGCGATCATGGCAGTGGAACTGGCGGAGGGTTTGGCGGCCCTGGTAGTGTAAGCGGCGGAGGGTTTGGCGGCCCTGGTAGTGGAAGCGGCGGAGGGTACGGCAGTGGATATGGCGGCGGATGGCCGTGAAATTAATGTAAACGTAAGTAGCTGTGGCGTTAGCCATTGCATTAATATTTTAGTAGTTGCATTTTAATTTCATGTTATGTGCTTTGTGAAATGTTGTGAGTAGGATGTAATGATATAATGTAATGTTGGTTAATAAATTAGTGTAATTTAATTTA................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338535" ref_strand="+" ref_description="SGN-E338535 [cTOE-15-A11]">
      <seq>aaatatccagtaaaaaaaagcaaataaaaggtctgaataaagaaagcttaagcagctgttcttcgtgggcgaaaattcaatcggcgccttcttctccaaccctacaatctcatcaaatttcactcttcttccattaatatcagttttaagagatcgagagctgcgatgttaggtgttttaaggcgcaaagctatttctagcgcctcttttacttcgtgtgtaaggaaatctctgcatacggttcgacctgcagtatgtaaatctagaattccatctgctgctgcagaagagatatcattgcttactagacaatgtggtcatgtgcgaaatttcaatcagcttgtgctgcctgggtgctcatcaaatttgcgcccagaaagggctgtgaccaatcttttctcaagtccaacactatcaaattggagcaggcctttctgcgcaaatagtggtgataccgttgacgctgttgttccatatatgggtgaatccattagtgatgggacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5146" stop="9657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5446" g_stop="5588" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5589" i_stop="5693" i_length="105">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5694" g_stop="5766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="216" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5767" i_stop="5865" i_length="99">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5866" g_stop="5940" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="291" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5941" i_stop="6904" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6905" g_stop="6965" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="352" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6966" i_stop="7043" i_length="78">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7044" g_stop="7071" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="380" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7072" i_stop="8247" i_length="1176">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8248" g_stop="8315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="448" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9300" g_stop="9357" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="506" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E338535" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5446" e_stop="5588"/>
          <exon e_start="5694" e_stop="5766"/>
          <exon e_start="5866" e_stop="5940"/>
          <exon e_start="6905" e_stop="6965"/>
          <exon e_start="7044" e_stop="7071"/>
          <exon e_start="8248" e_stop="8315"/>
          <exon e_start="9300" e_stop="9357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATACAGTAAAAAAAAGCAAATAAAAGGTCTGAATAAAGAAAGCTTAAGCAGCTGTTCTTCGTGGGCGAAAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAGGTCTAAAATCTTCATTATCACTGTTCATTTTCTCATATTACACAAGATCTGTTTACAGTGATTCGTACATTATTTTTTTTTTTTTTTGTTATATTGATTGAACAGTTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCGGTATGAATCGTGATTTAGTTTTATTGCGTTTGTTTTGATATATTAATTGCTGATATTTGTATAATGAGTTGCTGAAATTATTTGATTTTGCTGAACCAGTGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAGGTAATGTCTATTTATGAGCTATCCTCTTTTTTTTCATTTAAGTGATTGGAGTTCTTAATAGGATAGATAAATTGCTATTTTATGGAGGTAAAAAATTCGTTAAATTGATTTTGGAATACCTTTTGGCAAAAATATATAAATGATAAAGAAGAAAAAAGAACATTTCTCCTTTTAGCTCAAGTCAAGTTCACGGTATGTTAGATTTCAGCCATTTTTTGGATAAGCACATTTTTTTTTTGGATAACTGTGGCGTCTGGGTTAGCCTGCACCTCGACTAATTCCACGTGATATCTGTCATCTCCTACAAGCAACTAGTACCAAATAACTCTTATCCACCAAAGATATAATAGCTGCGAAGAATTCACTAGTCTTTTTGTCTATCGAGATTTGAACGTGAGACCTCATGATACTCAATCCACTTCATTGACCACGAAACCATGCCATTGGGTGCAGATGAGCACATTATTTATAGCCACATATTTGAGATACTTGATCATCATCATTTTGTCATTCATACTATTGATGATTGAATTTGACAGAACCGTTTTGATATTGGTACGTGTTACCTGGATAAGGATTATTGTTTTCTCTAGACTCTAGTACGGTAAATTTTTAAATTTATTAAGATTTTGATACAACAGTTTCGAATTTTGCAGTGTTGTACTCTTATTATAAGTATTGTTATGATTGCATGTGGCTATCCTTACTTTCTCATTATGCAATGTATTGGTACTAGCCTTTTTTTTGTGATCGATTCTATCACATTATGCTCTGACTTAGTACTATTCAGATTCCATGACATACTGTCTTATGGCAACCCTTCTAATACTTAACCATTCAGACTCTTATTTTTGTCCTTTGCCTCGTTATATTGAACATGAGCCTTCATGCTATTTGACTTGCTGCTGTTTTTTATTAACCCCATTTAAAAGGTCGTCGTGACATATTTTGAAAATGATAACAGATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTGGTATGTGTAACTAATCCATGATGACTCAGTGTATTTATACTGGTGTGCGATATAATTAGCTCCTACTTCTTAATCCAGGGTGCTCATCAAATTTGCGCCCAGAAAGGTTAGTATATATTATTGCTTAACACCTTTCATATATTATTTGAATCTTAGAGCATGAATAAATGCACAATGTATTTATAGAAGTAGCCATTCTATTTTTCTCTGTCTAGGTCAAACTCGGTAGAATTTTCCATTGCTTTATAGTTATATTATCTGCATTCATAGGGACCTAATCGGTGTTGTTGGATTTGCTTTGTATTTTCATTTGGTTGAATGAGTAACTAAAAGTTGAGACACTCCAATTAAATATTAATTACTTTGTGGATTGCCGGTGTGTGCATGTCCTTAGAGGAGACGGAGATAGTGGACCTCTGTCAGTGAATGTACATGTATCATAATGATAGTGTGTGCATGTCACATAACTTGATTTCAAAAGAGAAGTTTGTTCGATTAGTTAGTTTGTTGTGCACAACATCATATATTTTGAAATTGTCTTGAAGCATTTGGGATGTCCTAAAGTGATACCAATAGTGCCACTTTTTTTCATGTGTATATAACATCTTGTATAAAATATTTGCACTAAGCTAGTACAGTTAGCTTAGTCACAAGTTGTGCAAATCAGCTTTGTGTCTAAAATATCATTTACAACTTGTTCAAAAGCTAGTTTGCACCAAAACGCATCTAAGTTAAGGCACTGTATGCTTCTTCTTTTTGCCTTAAAAATTCTGCTATTTTTTTCTCTGAATGTCACATTTTCCCTTGTAGCCAATTAAAAGGACTCCTAGCAAATAACCGGGTAATGCAATTTGATCGGCTAACGTATAAAACACTTGAAGAAGTCTTGACATGAAGAAGATTATATTGAATTTCCATGCAAATTTAAAAAGGGATAGCAGTCAAAGATTGTTATATATGTTAACAATTTCAGTTGTTCTCTGCTAATCAAGCCTAGAAACTTCATTTTTGGTCCCACCGAAAATCATATATTGTCATAATTTATAATATGAATTTTACCCAATATGAAGTGTGTAGGTGTTGGGAATGTTCAGATACATCAATCTTTTACCTTGTTGTGATGCTTGGATTCATATATCTGACCTAACTTGTTTGGGATCGAGGCATATTTGTTGTTGTATGTTAATTAAAAAAAATACGATACTTGGTGATATGTTCATTCTCTCTCTCTCTCTCTCACACACACACCAGTTGGTTATATTAATTAGTGCATTGCTTGCAGGGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTGGTATATTTTTCTAATAATTTATCAAGCTTGCCTGGAACGCTGATGCAAATGAAATTAGTCACGACATGCTTACACTGTATATAGTATTGTTCAAAAATGTAATCTGGTCTCTTGGTATTGTTCCTGCAGTTCATCATGGTCCCAACTACCATCACATGTATTCTTTAGTACCTTTGAACTTATAAATTATCAGTTAGATACTCCTATGTCAGTTGTACCTTCTCTTCTAAATAATTATTATCTTCACATACTTTATTGAAGTTACCCTTTCTTTTCATCTTTTTTGGGATTGCGGTCTTATATGGAATTATATTATAGATACTTAAAAATGTGACATGTATCTTTTGATTGCCTATTATTGTACCAAATGATTGGCTGTTAGTTCTGGTCATTTGCAAATTTCTGTTTGGACGTGGAAGAAGTATTTGCGTTATCTACCTGGAGGATATAACTAGTTAACTCAATTTTAAAAAAATATAGCTAGTTAGCAGTTTCAACTCCGTATAAAGTTCTGTATCATCTATTGGATCGGGACTGCCATTATCATCAACATCGATGCCATCAAGAAGGGCCTGTCTATCATCTTCACCGCATAGGAACTACTTGATCACTCCAATGTTGCCTTCGCATCCTAGGGTTACATATGTCAATATGACTCTTTTCAATAAGTGGAAATCATTATCTTTAAAAGAATTTATGATAAGATGCTAGTTCAATTAGTTTAATGACCCTATCTTAAAGCTTCGCATCTGGTGGAGTAGAAGAAATTTAGAATTAGTTGGAAATTAGCACTCTTGTTTACAGTTAAAGAATGTTGGAATTCTAAATGTATCATGCAATAATGTATTGACAGCTTCCATATATATTTTAATTGTTATTTCATTTGCTTTCTCCTTTTCTCTGTCATCCCTTTTCCCTTATTCTGTATTGCTACAGTTCCTCACTTTTTTTTCTTTTATTTGCGTGTCTATAATTGTAATGTAGGTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACT</genome_strand>
        <mrna_strand>AAATATCCAGTAAAAAAAAGCAAATAAAAGGTCTGAATAAAGAAAGCTTAAGCAGCTGTTCTTCGTGGGCGAAAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAG.........................................................................................................TTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCG...................................................................................................TGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTG..............................................................................GGTGCTCATCAAATTTGCGCCCAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746333" ref_strand="+" ref_description="SGN-E746333 [GI|47104721]">
      <seq>tttaagcagctgttcttcgtgggcgaaaattcaatcggcgccttcttctccaaccctacaatctcatcaaatttcactcttcttccattaatatcagttttaagagatcgagagctgcgatgttaggtgttttaaggcgcaaagctatttctagcgcctcttttacttcgtgtgtaaggaaatctctgcatacggttcgacctgcagtatgtaaatctagaattccatctgctgctgcagaagagatatcattgcttactagacaatgtggtcatgtgcgaaatttcaatcagcttgtgctgcctgggtgctcatcaaatttgcgcccagaaagggctgtgaccaatctttgctcaagtccaacactatcaaattggagcaggcctttctgcgcaaatagtggtgatactgttgacgctgttgttccatatatgggtgaatccataagtgatgggacactggccaagttcctgaagaatgttggtgacagagtagaagttgatgagccaattgctcagattgaaacagataaggtaaccattgatgttaccagtcctgaagctggtgtaatccaaaagtttatagccaaggaaggggacactgtcgaaccaggcaataaagttgctatcatttcaaaatctggtgagggtgtggaacatgttgctccatctgagaagtcctctgagaaagtagctcctgcagctgaggataagaaagaggaaaaggcaaaacctcaagttgagacaactcccgtcaaggagaagcctaagggaagttcacctccaccccctaaacgctctcctacagagctccagcttcctcccaaagaacgggaaagacgagttcccatgaccaggctcagaaaaagagttgccacacgtttgaaagattctcagaacacatttgctttgctgacaacattcaatgaagttgatatgacaaatttgatgaagctccgttctgattacaaagatgcctttttttgaaaagcatggagtcaagttaggattcatgtctggatttgtgaaagcagcagttagcgcactccagaatcagccaattgttaatgctgttatcgatggtgatgacatcatatatagggattatatagacatcagtatcgctgttggtacaccaaagggtcttgttgttccggttatccgcaacgctgagcagatgaattttgctgagatagaaaagacaattaactcacttgctaagaaggcaaatgatggaagcatatctattgatgaaatggctggagggtcattcaccatttcaaacggtggagtgtatggaagtcttatcagtacccctatcataaatcctccccagtctgctatcttgggaatgcattcaatagtcagtcgtcctatggtcgttggaggcaatattgttccaagaccaatgatgtacattgctctgacatacgatcataggctgatcgatggaagagaggcagtcttcttcttgagaagaatcaaggatgtggttgaagatccccgtcgcttgctccttgatgtttgaagatgaaccacaccgtctggcttttgattttgatccgtccgtgggtatacctgagtgtacaactcaatcatagaaccagaataaatggcaatatcagagttttgttggcctgaggtgttgctttggtcctctgattattgcagccacagctatatttgacatttgcagatagaaccataaagaatttacagtccttcccatttacccttttgcacaactatattttactttgcatgaatatttatttctcgtttcaaaatattcaaaccaacctgaactttctttgaattgggacacacttgcattagcctattggctatagtattttcttctgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5193" stop="12125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5492" g_stop="5588" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5589" i_stop="5693" i_length="105">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5694" g_stop="5766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="170" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5767" i_stop="5865" i_length="99">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5866" g_stop="5940" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="245" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5941" i_stop="6904" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6905" g_stop="6965" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="306" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6966" i_stop="7043" i_length="78">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7044" g_stop="7071" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="334" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7072" i_stop="8247" i_length="1176">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8248" g_stop="8315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="402" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9300" g_stop="9374" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="477" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9375" i_stop="9475" i_length="101">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9476" g_stop="9531" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="533" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9532" i_stop="9627" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9628" g_stop="9672" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="578" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="9673" i_stop="9783" i_length="111">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="9784" g_stop="10047" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="842" r_length="264" r_score="0.996"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="10048" i_stop="10153" i_length="106">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="10154" g_stop="10248" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="843" r_stop="937" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="10249" i_stop="10522" i_length="274">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="10523" g_stop="10613" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="938" r_stop="1029" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="10614" i_stop="10692" i_length="79">
            <donor d_prob="0.819" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="10693" g_stop="10803" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1030" r_stop="1140" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="10804" i_stop="11019" i_length="216">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="11020" g_stop="11214" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1141" r_stop="1335" r_length="195" r_score="0.990"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="11215" i_stop="11297" i_length="83">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="11298" g_stop="11824" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1336" r_stop="1862" r_length="527" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1863" polyA_stop="1878"/>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E746333" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1861</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5492" e_stop="5588"/>
          <exon e_start="5694" e_stop="5766"/>
          <exon e_start="5866" e_stop="5940"/>
          <exon e_start="6905" e_stop="6965"/>
          <exon e_start="7044" e_stop="7071"/>
          <exon e_start="8248" e_stop="8315"/>
          <exon e_start="9300" e_stop="9374"/>
          <exon e_start="9476" e_stop="9531"/>
          <exon e_start="9628" e_stop="9672"/>
          <exon e_start="9784" e_stop="10047"/>
          <exon e_start="10154" e_stop="10248"/>
          <exon e_start="10523" e_stop="10613"/>
          <exon e_start="10693" e_stop="10803"/>
          <exon e_start="11020" e_stop="11214"/>
          <exon e_start="11298" e_stop="11824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAGCAGCTGTTCTTCGTGGGCGAAAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAGGTCTAAAATCTTCATTATCACTGTTCATTTTCTCATATTACACAAGATCTGTTTACAGTGATTCGTACATTATTTTTTTTTTTTTTTGTTATATTGATTGAACAGTTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCGGTATGAATCGTGATTTAGTTTTATTGCGTTTGTTTTGATATATTAATTGCTGATATTTGTATAATGAGTTGCTGAAATTATTTGATTTTGCTGAACCAGTGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAGGTAATGTCTATTTATGAGCTATCCTCTTTTTTTTCATTTAAGTGATTGGAGTTCTTAATAGGATAGATAAATTGCTATTTTATGGAGGTAAAAAATTCGTTAAATTGATTTTGGAATACCTTTTGGCAAAAATATATAAATGATAAAGAAGAAAAAAGAACATTTCTCCTTTTAGCTCAAGTCAAGTTCACGGTATGTTAGATTTCAGCCATTTTTTGGATAAGCACATTTTTTTTTTGGATAACTGTGGCGTCTGGGTTAGCCTGCACCTCGACTAATTCCACGTGATATCTGTCATCTCCTACAAGCAACTAGTACCAAATAACTCTTATCCACCAAAGATATAATAGCTGCGAAGAATTCACTAGTCTTTTTGTCTATCGAGATTTGAACGTGAGACCTCATGATACTCAATCCACTTCATTGACCACGAAACCATGCCATTGGGTGCAGATGAGCACATTATTTATAGCCACATATTTGAGATACTTGATCATCATCATTTTGTCATTCATACTATTGATGATTGAATTTGACAGAACCGTTTTGATATTGGTACGTGTTACCTGGATAAGGATTATTGTTTTCTCTAGACTCTAGTACGGTAAATTTTTAAATTTATTAAGATTTTGATACAACAGTTTCGAATTTTGCAGTGTTGTACTCTTATTATAAGTATTGTTATGATTGCATGTGGCTATCCTTACTTTCTCATTATGCAATGTATTGGTACTAGCCTTTTTTTTGTGATCGATTCTATCACATTATGCTCTGACTTAGTACTATTCAGATTCCATGACATACTGTCTTATGGCAACCCTTCTAATACTTAACCATTCAGACTCTTATTTTTGTCCTTTGCCTCGTTATATTGAACATGAGCCTTCATGCTATTTGACTTGCTGCTGTTTTTTATTAACCCCATTTAAAAGGTCGTCGTGACATATTTTGAAAATGATAACAGATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTGGTATGTGTAACTAATCCATGATGACTCAGTGTATTTATACTGGTGTGCGATATAATTAGCTCCTACTTCTTAATCCAGGGTGCTCATCAAATTTGCGCCCAGAAAGGTTAGTATATATTATTGCTTAACACCTTTCATATATTATTTGAATCTTAGAGCATGAATAAATGCACAATGTATTTATAGAAGTAGCCATTCTATTTTTCTCTGTCTAGGTCAAACTCGGTAGAATTTTCCATTGCTTTATAGTTATATTATCTGCATTCATAGGGACCTAATCGGTGTTGTTGGATTTGCTTTGTATTTTCATTTGGTTGAATGAGTAACTAAAAGTTGAGACACTCCAATTAAATATTAATTACTTTGTGGATTGCCGGTGTGTGCATGTCCTTAGAGGAGACGGAGATAGTGGACCTCTGTCAGTGAATGTACATGTATCATAATGATAGTGTGTGCATGTCACATAACTTGATTTCAAAAGAGAAGTTTGTTCGATTAGTTAGTTTGTTGTGCACAACATCATATATTTTGAAATTGTCTTGAAGCATTTGGGATGTCCTAAAGTGATACCAATAGTGCCACTTTTTTTCATGTGTATATAACATCTTGTATAAAATATTTGCACTAAGCTAGTACAGTTAGCTTAGTCACAAGTTGTGCAAATCAGCTTTGTGTCTAAAATATCATTTACAACTTGTTCAAAAGCTAGTTTGCACCAAAACGCATCTAAGTTAAGGCACTGTATGCTTCTTCTTTTTGCCTTAAAAATTCTGCTATTTTTTTCTCTGAATGTCACATTTTCCCTTGTAGCCAATTAAAAGGACTCCTAGCAAATAACCGGGTAATGCAATTTGATCGGCTAACGTATAAAACACTTGAAGAAGTCTTGACATGAAGAAGATTATATTGAATTTCCATGCAAATTTAAAAAGGGATAGCAGTCAAAGATTGTTATATATGTTAACAATTTCAGTTGTTCTCTGCTAATCAAGCCTAGAAACTTCATTTTTGGTCCCACCGAAAATCATATATTGTCATAATTTATAATATGAATTTTACCCAATATGAAGTGTGTAGGTGTTGGGAATGTTCAGATACATCAATCTTTTACCTTGTTGTGATGCTTGGATTCATATATCTGACCTAACTTGTTTGGGATCGAGGCATATTTGTTGTTGTATGTTAATTAAAAAAAATACGATACTTGGTGATATGTTCATTCTCTCTCTCTCTCTCTCACACACACACCAGTTGGTTATATTAATTAGTGCATTGCTTGCAGGGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTGGTATATTTTTCTAATAATTTATCAAGCTTGCCTGGAACGCTGATGCAAATGAAATTAGTCACGACATGCTTACACTGTATATAGTATTGTTCAAAAATGTAATCTGGTCTCTTGGTATTGTTCCTGCAGTTCATCATGGTCCCAACTACCATCACATGTATTCTTTAGTACCTTTGAACTTATAAATTATCAGTTAGATACTCCTATGTCAGTTGTACCTTCTCTTCTAAATAATTATTATCTTCACATACTTTATTGAAGTTACCCTTTCTTTTCATCTTTTTTGGGATTGCGGTCTTATATGGAATTATATTATAGATACTTAAAAATGTGACATGTATCTTTTGATTGCCTATTATTGTACCAAATGATTGGCTGTTAGTTCTGGTCATTTGCAAATTTCTGTTTGGACGTGGAAGAAGTATTTGCGTTATCTACCTGGAGGATATAACTAGTTAACTCAATTTTAAAAAAATATAGCTAGTTAGCAGTTTCAACTCCGTATAAAGTTCTGTATCATCTATTGGATCGGGACTGCCATTATCATCAACATCGATGCCATCAAGAAGGGCCTGTCTATCATCTTCACCGCATAGGAACTACTTGATCACTCCAATGTTGCCTTCGCATCCTAGGGTTACATATGTCAATATGACTCTTTTCAATAAGTGGAAATCATTATCTTTAAAAGAATTTATGATAAGATGCTAGTTCAATTAGTTTAATGACCCTATCTTAAAGCTTCGCATCTGGTGGAGTAGAAGAAATTTAGAATTAGTTGGAAATTAGCACTCTTGTTTACAGTTAAAGAATGTTGGAATTCTAAATGTATCATGCAATAATGTATTGACAGCTTCCATATATATTTTAATTGTTATTTCATTTGCTTTCTCCTTTTCTCTGTCATCCCTTTTCCCTTATTCTGTATTGCTACAGTTCCTCACTTTTTTTTCTTTTATTTGCGTGTCTATAATTGTAATGTAGGTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGAGTATGTCTTTATTGATGTGGTCTCTGATCCATCTTATATGCAGTAGTATTCATAGTCACTCTGTACTTACTGTTTTTTCATGTTTCCTTCTATATGAGCAGATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAGGTACCCTGTTTCTAATATTAGTTAATTTTAATCACATTATCTCAGGTCTGTCTGGAGATTAATGACACTTATATATGAATGGTTTTTATTGGACAGGTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAGGTAGAACATCTTTGGCACTGGAGCTCTGCGTTGCTCAACCTCCCACCACCTAGTTTATTACATTTTATTTTTTGATCAACAACTTCTGAATCTGGTTTTGAATATCTATAGTTTATAGCCAAGGAAGGGGACACTGTCGAACCAGGCAATAAAGTTGCTATCATTTCAAAATCTGGTGAGGGTGTGGAACATGTTGCTCCATCTGAGAAGTCCTCTGAGAAAGTAGCTCCTGCAGCTGAGGATAAGAAAGAGGAAAAGGCAAAACCTCAAGTTGAGACAACTCCCGTCAAGGAGAAGCCTAAGGGAAGTTCACCTCCACCCCCTAAACGCTCTCCTACAGAGCTCCAACTTCCTCCCAAAGAACGGGAAAGACGAGTGAGTCAATAGCTAATGTTGTTGTAATCTCATTGTCATGGCACTACTCATTTATGTAACTTGGCACTTACTGTGTGTTATCTTCTATAATCTGTTTTGATGACAGGTTCCCATGACCAGGCTCAGAAAAAGAGTTGCCACACGTTTGAAAGATTCTCAGAACACATTTGCTTTGCTGACAACATTCAATGAAGTTGATATGTAAGTTTGGACTTTGATTTTGAATAAGACACTATTTTTTTGTGCTAATATTTCTGCACCTTATCCTAAGTATAGAGAAACAGAAAATTTTGATCTAGGAATTGAAGGTTATAAACTTCAGTTACCTTTTCCAATTTATTTTCCTAGATGCAGATTGGTCTCTGTTGTGACCTAGGAGGGGTGTGGGCATTGATCAGATGTGATGTAGTAGTATTTGTTTTGCATCTTTGTTGACCTTATGTTGTATCTCTTTCTTCATTGTTGTTCTATTCAGGACAAATTTGATGAAGCTCCGTTCTGATTACAAAGATGCC-TTTTTTGAAAAGCATGGAGTCAAGTTAGGATTCATGTCTGGATTTGTGAAAGTATGATGAGGACTAATTTCTGTTTGTTTTTGTATCTTCATTGTAAAATTCTGGCCTAAAATGCTTATATAAATTTCAGGCAGCAGTTAGCGCACTCCAGAATCAGCCAATTGTTAATGCTGTTATCGATGGTGATGACATCATATATAGGGATTATATAGACATCAGTATCGCTGTTGGTACACCAAAGGCAAGCTAGCTCTTTCTTTGCTTCAAAGTTTCATATTACATGGGCTTGTCTTGCATAATTCCTAATCTGTCTCAATTTGTCCTTCAAACTCTCTTTTATATGGACTCTACTTGTTGAGTTTTTGGCAGTGTTTTTATAGACGTTTAGAGTGAAATGAGAACTGCAAGAGAGAGACTTTAGGGATGATATTAAGTATCCTTTTTTCTCCTTGCTCAGGGTCTTGTTGTTCCAGTTATCCGCAACGCTGAGCAGATGAATTTTGCTGAGATAGAAAAGACAATTAACTCACTTGCTAAGAAGGCAAATGATGGAAGCATATCTATTGATGAAATGGCTGGAGGGTCATTCACCATTTCAAACGGTGGAGTGTATGGAAGTCTTATCAGTACCCCTATCATTAATCCTCCCCAGGTATGTATCGTAGGAAGAGATTGCAATTACCTTGTAGTTGTAGAGCTATCTCACCGTCAAAAATTTGCTGCTTGATTTTGTAGTCTGCTATCTTGGGAATGCATTCAATAGTCAGTCGTCCTATGGTCGTTGGAGGCAATATTGTTCCAAGACCAATGATGTACATTGCTCTGACATACGATCACAGGCTGATCGATGGAAGAGAGGCAGTCTTCTTCTTGAGAAGAATCAAGGATGTGGTTGAAGATCCCCGTCGCTTGCTCCTTGATGTTTGAAGATGAACCACATCATCTGGCTTTTGATTTTGATCCGTCCGTGGGTATACCTGAGTGTACAACTCAATCATAGAACCAGAATAAATGGCAATATCAGAGTTTTGTTGGCCTGAGGTGTTGCTTTGGTCCTCTGATTATTGCAGCCACAGCTATATTTGAGATTCGCAGATAGAACCCTAAAGAATTTACGGTCCTTCCCATTTACCCTTTTGCACAACTATATTTTACTTTGCATGAATATTTATTTCTCGTTTCAAAATATTAAAACCAACCTGAACTTTCTTTGAATTGGGACACACTTGCATTAGCCTATTGGCTATAGTATTTTCTTCTGT</genome_strand>
        <mrna_strand>TTTAAGCAGCTGTTCTTCGTGGGCGAAAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAG.........................................................................................................TTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCG...................................................................................................TGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTG..............................................................................GGTGCTCATCAAATTTGCGCCCAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGACCAATCTTTGCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACTGTTGACGCTGTTGTTCCATATATGGGTGAATCCATAAGTGATGGGACACTGGCCAAGTTCCTGAAGA.....................................................................................................ATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAG................................................................................................GTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAG...............................................................................................................TTTATAGCCAAGGAAGGGGACACTGTCGAACCAGGCAATAAAGTTGCTATCATTTCAAAATCTGGTGAGGGTGTGGAACATGTTGCTCCATCTGAGAAGTCCTCTGAGAAAGTAGCTCCTGCAGCTGAGGATAAGAAAGAGGAAAAGGCAAAACCTCAAGTTGAGACAACTCCCGTCAAGGAGAAGCCTAAGGGAAGTTCACCTCCACCCCCTAAACGCTCTCCTACAGAGCTCCAGCTTCCTCCCAAAGAACGGGAAAGACGA..........................................................................................................GTTCCCATGACCAGGCTCAGAAAAAGAGTTGCCACACGTTTGAAAGATTCTCAGAACACATTTGCTTTGCTGACAACATTCAATGAAGTTGATAT..................................................................................................................................................................................................................................................................................GACAAATTTGATGAAGCTCCGTTCTGATTACAAAGATGCCTTTTTTTGAAAAGCATGGAGTCAAGTTAGGATTCATGTCTGGATTTGTGAAA...............................................................................GCAGCAGTTAGCGCACTCCAGAATCAGCCAATTGTTAATGCTGTTATCGATGGTGATGACATCATATATAGGGATTATATAGACATCAGTATCGCTGTTGGTACACCAAAG........................................................................................................................................................................................................................GGTCTTGTTGTTCCGGTTATCCGCAACGCTGAGCAGATGAATTTTGCTGAGATAGAAAAGACAATTAACTCACTTGCTAAGAAGGCAAATGATGGAAGCATATCTATTGATGAAATGGCTGGAGGGTCATTCACCATTTCAAACGGTGGAGTGTATGGAAGTCTTATCAGTACCCCTATCATAAATCCTCCCCAG...................................................................................TCTGCTATCTTGGGAATGCATTCAATAGTCAGTCGTCCTATGGTCGTTGGAGGCAATATTGTTCCAAGACCAATGATGTACATTGCTCTGACATACGATCATAGGCTGATCGATGGAAGAGAGGCAGTCTTCTTCTTGAGAAGAATCAAGGATGTGGTTGAAGATCCCCGTCGCTTGCTCCTTGATGTTTGAAGATGAACCACACCGTCTGGCTTTTGATTTTGATCCGTCCGTGGGTATACCTGAGTGTACAACTCAATCATAGAACCAGAATAAATGGCAATATCAGAGTTTTGTTGGCCTGAGGTGTTGCTTTGGTCCTCTGATTATTGCAGCCACAGCTATATTTGACATTTGCAGATAGAACCATAAAGAATTTACAGTCCTTCCCATTTACCCTTTTGCACAACTATATTTTACTTTGCATGAATATTTATTTCTCGTTTCAAAATATTCAAACCAACCTGAACTTTCTTTGAATTGGGACACACTTGCATTAGCCTATTGGCTATAGTATTTTCTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357264" ref_strand="+" ref_description="SGN-E357264 [cLHT-17-P12]">
      <seq>tttaagcagctgttcttcgtgggcgaaaattcaatcggcgccttcttctccaaccctacaatctcatcaaatttcactcttcttccattaatatcagttttaagagatcgagagctgcgatgttaggtgttttaaggcgcaaagctatttctagcgcctcttttacttcgtgtgtaaggaaatctctgcatacggttcgacctgcagtatgtaaatctagaattccatctgctgctgcagaagagatatcattgcttactagacaatgtggtcatgtgcgaaatttcaatcagcttgtgctgcctgggtgctcatcaaatttgcgcccagaaagggctgtgaccaatctttgctcaagtccaacactatcaaattggagcaggcctttctgcgcaaatagtggtgatactgttgacgctgttgttccatatatgggtgaatccataagtgatgggacactggccaagttcctgaagaatgttggtgacagagtagaagttgatgagccaattgctcagattgaaacagataaggtaaccattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5193" stop="9841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5492" g_stop="5588" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5589" i_stop="5693" i_length="105">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5694" g_stop="5766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="170" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5767" i_stop="5865" i_length="99">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5866" g_stop="5940" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="245" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5941" i_stop="6904" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6905" g_stop="6965" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="306" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6966" i_stop="7043" i_length="78">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7044" g_stop="7071" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="334" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7072" i_stop="8247" i_length="1176">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8248" g_stop="8315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="402" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9300" g_stop="9374" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="477" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9375" i_stop="9475" i_length="101">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9476" g_stop="9531" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="533" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9532" i_stop="9627" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9628" g_stop="9639" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="545" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E357264" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5492" e_stop="5588"/>
          <exon e_start="5694" e_stop="5766"/>
          <exon e_start="5866" e_stop="5940"/>
          <exon e_start="6905" e_stop="6965"/>
          <exon e_start="7044" e_stop="7071"/>
          <exon e_start="8248" e_stop="8315"/>
          <exon e_start="9300" e_stop="9374"/>
          <exon e_start="9476" e_stop="9531"/>
          <exon e_start="9628" e_stop="9639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAGCAGCTGTTCTTCGTGGGCGAAAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAGGTCTAAAATCTTCATTATCACTGTTCATTTTCTCATATTACACAAGATCTGTTTACAGTGATTCGTACATTATTTTTTTTTTTTTTTGTTATATTGATTGAACAGTTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCGGTATGAATCGTGATTTAGTTTTATTGCGTTTGTTTTGATATATTAATTGCTGATATTTGTATAATGAGTTGCTGAAATTATTTGATTTTGCTGAACCAGTGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAGGTAATGTCTATTTATGAGCTATCCTCTTTTTTTTCATTTAAGTGATTGGAGTTCTTAATAGGATAGATAAATTGCTATTTTATGGAGGTAAAAAATTCGTTAAATTGATTTTGGAATACCTTTTGGCAAAAATATATAAATGATAAAGAAGAAAAAAGAACATTTCTCCTTTTAGCTCAAGTCAAGTTCACGGTATGTTAGATTTCAGCCATTTTTTGGATAAGCACATTTTTTTTTTGGATAACTGTGGCGTCTGGGTTAGCCTGCACCTCGACTAATTCCACGTGATATCTGTCATCTCCTACAAGCAACTAGTACCAAATAACTCTTATCCACCAAAGATATAATAGCTGCGAAGAATTCACTAGTCTTTTTGTCTATCGAGATTTGAACGTGAGACCTCATGATACTCAATCCACTTCATTGACCACGAAACCATGCCATTGGGTGCAGATGAGCACATTATTTATAGCCACATATTTGAGATACTTGATCATCATCATTTTGTCATTCATACTATTGATGATTGAATTTGACAGAACCGTTTTGATATTGGTACGTGTTACCTGGATAAGGATTATTGTTTTCTCTAGACTCTAGTACGGTAAATTTTTAAATTTATTAAGATTTTGATACAACAGTTTCGAATTTTGCAGTGTTGTACTCTTATTATAAGTATTGTTATGATTGCATGTGGCTATCCTTACTTTCTCATTATGCAATGTATTGGTACTAGCCTTTTTTTTGTGATCGATTCTATCACATTATGCTCTGACTTAGTACTATTCAGATTCCATGACATACTGTCTTATGGCAACCCTTCTAATACTTAACCATTCAGACTCTTATTTTTGTCCTTTGCCTCGTTATATTGAACATGAGCCTTCATGCTATTTGACTTGCTGCTGTTTTTTATTAACCCCATTTAAAAGGTCGTCGTGACATATTTTGAAAATGATAACAGATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTGGTATGTGTAACTAATCCATGATGACTCAGTGTATTTATACTGGTGTGCGATATAATTAGCTCCTACTTCTTAATCCAGGGTGCTCATCAAATTTGCGCCCAGAAAGGTTAGTATATATTATTGCTTAACACCTTTCATATATTATTTGAATCTTAGAGCATGAATAAATGCACAATGTATTTATAGAAGTAGCCATTCTATTTTTCTCTGTCTAGGTCAAACTCGGTAGAATTTTCCATTGCTTTATAGTTATATTATCTGCATTCATAGGGACCTAATCGGTGTTGTTGGATTTGCTTTGTATTTTCATTTGGTTGAATGAGTAACTAAAAGTTGAGACACTCCAATTAAATATTAATTACTTTGTGGATTGCCGGTGTGTGCATGTCCTTAGAGGAGACGGAGATAGTGGACCTCTGTCAGTGAATGTACATGTATCATAATGATAGTGTGTGCATGTCACATAACTTGATTTCAAAAGAGAAGTTTGTTCGATTAGTTAGTTTGTTGTGCACAACATCATATATTTTGAAATTGTCTTGAAGCATTTGGGATGTCCTAAAGTGATACCAATAGTGCCACTTTTTTTCATGTGTATATAACATCTTGTATAAAATATTTGCACTAAGCTAGTACAGTTAGCTTAGTCACAAGTTGTGCAAATCAGCTTTGTGTCTAAAATATCATTTACAACTTGTTCAAAAGCTAGTTTGCACCAAAACGCATCTAAGTTAAGGCACTGTATGCTTCTTCTTTTTGCCTTAAAAATTCTGCTATTTTTTTCTCTGAATGTCACATTTTCCCTTGTAGCCAATTAAAAGGACTCCTAGCAAATAACCGGGTAATGCAATTTGATCGGCTAACGTATAAAACACTTGAAGAAGTCTTGACATGAAGAAGATTATATTGAATTTCCATGCAAATTTAAAAAGGGATAGCAGTCAAAGATTGTTATATATGTTAACAATTTCAGTTGTTCTCTGCTAATCAAGCCTAGAAACTTCATTTTTGGTCCCACCGAAAATCATATATTGTCATAATTTATAATATGAATTTTACCCAATATGAAGTGTGTAGGTGTTGGGAATGTTCAGATACATCAATCTTTTACCTTGTTGTGATGCTTGGATTCATATATCTGACCTAACTTGTTTGGGATCGAGGCATATTTGTTGTTGTATGTTAATTAAAAAAAATACGATACTTGGTGATATGTTCATTCTCTCTCTCTCTCTCTCACACACACACCAGTTGGTTATATTAATTAGTGCATTGCTTGCAGGGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTGGTATATTTTTCTAATAATTTATCAAGCTTGCCTGGAACGCTGATGCAAATGAAATTAGTCACGACATGCTTACACTGTATATAGTATTGTTCAAAAATGTAATCTGGTCTCTTGGTATTGTTCCTGCAGTTCATCATGGTCCCAACTACCATCACATGTATTCTTTAGTACCTTTGAACTTATAAATTATCAGTTAGATACTCCTATGTCAGTTGTACCTTCTCTTCTAAATAATTATTATCTTCACATACTTTATTGAAGTTACCCTTTCTTTTCATCTTTTTTGGGATTGCGGTCTTATATGGAATTATATTATAGATACTTAAAAATGTGACATGTATCTTTTGATTGCCTATTATTGTACCAAATGATTGGCTGTTAGTTCTGGTCATTTGCAAATTTCTGTTTGGACGTGGAAGAAGTATTTGCGTTATCTACCTGGAGGATATAACTAGTTAACTCAATTTTAAAAAAATATAGCTAGTTAGCAGTTTCAACTCCGTATAAAGTTCTGTATCATCTATTGGATCGGGACTGCCATTATCATCAACATCGATGCCATCAAGAAGGGCCTGTCTATCATCTTCACCGCATAGGAACTACTTGATCACTCCAATGTTGCCTTCGCATCCTAGGGTTACATATGTCAATATGACTCTTTTCAATAAGTGGAAATCATTATCTTTAAAAGAATTTATGATAAGATGCTAGTTCAATTAGTTTAATGACCCTATCTTAAAGCTTCGCATCTGGTGGAGTAGAAGAAATTTAGAATTAGTTGGAAATTAGCACTCTTGTTTACAGTTAAAGAATGTTGGAATTCTAAATGTATCATGCAATAATGTATTGACAGCTTCCATATATATTTTAATTGTTATTTCATTTGCTTTCTCCTTTTCTCTGTCATCCCTTTTCCCTTATTCTGTATTGCTACAGTTCCTCACTTTTTTTTCTTTTATTTGCGTGTCTATAATTGTAATGTAGGTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGAGTATGTCTTTATTGATGTGGTCTCTGATCCATCTTATATGCAGTAGTATTCATAGTCACTCTGTACTTACTGTTTTTTCATGTTTCCTTCTATATGAGCAGATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAGGTACCCTGTTTCTAATATTAGTTAATTTTAATCACATTATCTCAGGTCTGTCTGGAGATTAATGACACTTATATATGAATGGTTTTTATTGGACAGGTAACCATTGAT</genome_strand>
        <mrna_strand>TTTAAGCAGCTGTTCTTCGTGGGCGAAAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAG.........................................................................................................TTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCG...................................................................................................TGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTG..............................................................................GGTGCTCATCAAATTTGCGCCCAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGACCAATCTTTGCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACTGTTGACGCTGTTGTTCCATATATGGGTGAATCCATAAGTGATGGGACACTGGCCAAGTTCCTGAAGA.....................................................................................................ATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAG................................................................................................GTAACCATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211846" ref_strand="+" ref_description="SGN-E211846 [cLEC-66-H2]">
      <seq>ttaagcagctgttcttcgtgggcgaaaattcaatcggcgccttcttctccaaccctacaatctcatcaaatttcactcttcttccattaatatcagttttaagagatcgagagctgcgatgttaggtgttttaaggcgcaaagctatttctagcgcctcttttacttcgtgtgtaaggaaatctctgcatacggttcgacctgcagtatgtaaatctagaattccatctgctgctgcagaagagatatcattgcttactagacaatgtggtcatgtgcgaaatttcaatcagcttgtgctgcctgggtgctcatcaaatttgcgcccagaaagggctgtgaccaatcttttctcaagtccaacactatcaaattggagcaggcctttctgcgcaaatagtggtgataccgttgacgctgttgttccatatatgggtgaatccattagtgatgggacactggccaagttcctgaagaatgttggtgacagagtagaagttgatgagccaattgctcagattgaaacagataaggtaaccattgatgttaccagtcctgaagctggtgtaatccaaaagtttatagccaaggaaagggacactgtcgaaccangcaataaagttgctatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5193" stop="10137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5493" g_stop="5588" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5589" i_stop="5693" i_length="105">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5694" g_stop="5766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="169" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5767" i_stop="5865" i_length="99">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5866" g_stop="5940" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="244" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5941" i_stop="6904" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6905" g_stop="6965" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="305" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6966" i_stop="7043" i_length="78">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7044" g_stop="7071" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="333" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7072" i_stop="8247" i_length="1176">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8248" g_stop="8315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="401" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9300" g_stop="9374" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="476" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9375" i_stop="9475" i_length="101">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9476" g_stop="9531" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="532" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9532" i_stop="9627" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9628" g_stop="9672" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="577" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="9673" i_stop="9783" i_length="111">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="9784" g_stop="9837" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="631" r_length="54" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E211846" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5493" e_stop="5588"/>
          <exon e_start="5694" e_stop="5766"/>
          <exon e_start="5866" e_stop="5940"/>
          <exon e_start="6905" e_stop="6965"/>
          <exon e_start="7044" e_stop="7071"/>
          <exon e_start="8248" e_stop="8315"/>
          <exon e_start="9300" e_stop="9374"/>
          <exon e_start="9476" e_stop="9531"/>
          <exon e_start="9628" e_stop="9672"/>
          <exon e_start="9784" e_stop="9837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGCAGCTGTTCTTCGTGGGCGAAAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAGGTCTAAAATCTTCATTATCACTGTTCATTTTCTCATATTACACAAGATCTGTTTACAGTGATTCGTACATTATTTTTTTTTTTTTTTGTTATATTGATTGAACAGTTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCGGTATGAATCGTGATTTAGTTTTATTGCGTTTGTTTTGATATATTAATTGCTGATATTTGTATAATGAGTTGCTGAAATTATTTGATTTTGCTGAACCAGTGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAGGTAATGTCTATTTATGAGCTATCCTCTTTTTTTTCATTTAAGTGATTGGAGTTCTTAATAGGATAGATAAATTGCTATTTTATGGAGGTAAAAAATTCGTTAAATTGATTTTGGAATACCTTTTGGCAAAAATATATAAATGATAAAGAAGAAAAAAGAACATTTCTCCTTTTAGCTCAAGTCAAGTTCACGGTATGTTAGATTTCAGCCATTTTTTGGATAAGCACATTTTTTTTTTGGATAACTGTGGCGTCTGGGTTAGCCTGCACCTCGACTAATTCCACGTGATATCTGTCATCTCCTACAAGCAACTAGTACCAAATAACTCTTATCCACCAAAGATATAATAGCTGCGAAGAATTCACTAGTCTTTTTGTCTATCGAGATTTGAACGTGAGACCTCATGATACTCAATCCACTTCATTGACCACGAAACCATGCCATTGGGTGCAGATGAGCACATTATTTATAGCCACATATTTGAGATACTTGATCATCATCATTTTGTCATTCATACTATTGATGATTGAATTTGACAGAACCGTTTTGATATTGGTACGTGTTACCTGGATAAGGATTATTGTTTTCTCTAGACTCTAGTACGGTAAATTTTTAAATTTATTAAGATTTTGATACAACAGTTTCGAATTTTGCAGTGTTGTACTCTTATTATAAGTATTGTTATGATTGCATGTGGCTATCCTTACTTTCTCATTATGCAATGTATTGGTACTAGCCTTTTTTTTGTGATCGATTCTATCACATTATGCTCTGACTTAGTACTATTCAGATTCCATGACATACTGTCTTATGGCAACCCTTCTAATACTTAACCATTCAGACTCTTATTTTTGTCCTTTGCCTCGTTATATTGAACATGAGCCTTCATGCTATTTGACTTGCTGCTGTTTTTTATTAACCCCATTTAAAAGGTCGTCGTGACATATTTTGAAAATGATAACAGATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTGGTATGTGTAACTAATCCATGATGACTCAGTGTATTTATACTGGTGTGCGATATAATTAGCTCCTACTTCTTAATCCAGGGTGCTCATCAAATTTGCGCCCAGAAAGGTTAGTATATATTATTGCTTAACACCTTTCATATATTATTTGAATCTTAGAGCATGAATAAATGCACAATGTATTTATAGAAGTAGCCATTCTATTTTTCTCTGTCTAGGTCAAACTCGGTAGAATTTTCCATTGCTTTATAGTTATATTATCTGCATTCATAGGGACCTAATCGGTGTTGTTGGATTTGCTTTGTATTTTCATTTGGTTGAATGAGTAACTAAAAGTTGAGACACTCCAATTAAATATTAATTACTTTGTGGATTGCCGGTGTGTGCATGTCCTTAGAGGAGACGGAGATAGTGGACCTCTGTCAGTGAATGTACATGTATCATAATGATAGTGTGTGCATGTCACATAACTTGATTTCAAAAGAGAAGTTTGTTCGATTAGTTAGTTTGTTGTGCACAACATCATATATTTTGAAATTGTCTTGAAGCATTTGGGATGTCCTAAAGTGATACCAATAGTGCCACTTTTTTTCATGTGTATATAACATCTTGTATAAAATATTTGCACTAAGCTAGTACAGTTAGCTTAGTCACAAGTTGTGCAAATCAGCTTTGTGTCTAAAATATCATTTACAACTTGTTCAAAAGCTAGTTTGCACCAAAACGCATCTAAGTTAAGGCACTGTATGCTTCTTCTTTTTGCCTTAAAAATTCTGCTATTTTTTTCTCTGAATGTCACATTTTCCCTTGTAGCCAATTAAAAGGACTCCTAGCAAATAACCGGGTAATGCAATTTGATCGGCTAACGTATAAAACACTTGAAGAAGTCTTGACATGAAGAAGATTATATTGAATTTCCATGCAAATTTAAAAAGGGATAGCAGTCAAAGATTGTTATATATGTTAACAATTTCAGTTGTTCTCTGCTAATCAAGCCTAGAAACTTCATTTTTGGTCCCACCGAAAATCATATATTGTCATAATTTATAATATGAATTTTACCCAATATGAAGTGTGTAGGTGTTGGGAATGTTCAGATACATCAATCTTTTACCTTGTTGTGATGCTTGGATTCATATATCTGACCTAACTTGTTTGGGATCGAGGCATATTTGTTGTTGTATGTTAATTAAAAAAAATACGATACTTGGTGATATGTTCATTCTCTCTCTCTCTCTCTCACACACACACCAGTTGGTTATATTAATTAGTGCATTGCTTGCAGGGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTGGTATATTTTTCTAATAATTTATCAAGCTTGCCTGGAACGCTGATGCAAATGAAATTAGTCACGACATGCTTACACTGTATATAGTATTGTTCAAAAATGTAATCTGGTCTCTTGGTATTGTTCCTGCAGTTCATCATGGTCCCAACTACCATCACATGTATTCTTTAGTACCTTTGAACTTATAAATTATCAGTTAGATACTCCTATGTCAGTTGTACCTTCTCTTCTAAATAATTATTATCTTCACATACTTTATTGAAGTTACCCTTTCTTTTCATCTTTTTTGGGATTGCGGTCTTATATGGAATTATATTATAGATACTTAAAAATGTGACATGTATCTTTTGATTGCCTATTATTGTACCAAATGATTGGCTGTTAGTTCTGGTCATTTGCAAATTTCTGTTTGGACGTGGAAGAAGTATTTGCGTTATCTACCTGGAGGATATAACTAGTTAACTCAATTTTAAAAAAATATAGCTAGTTAGCAGTTTCAACTCCGTATAAAGTTCTGTATCATCTATTGGATCGGGACTGCCATTATCATCAACATCGATGCCATCAAGAAGGGCCTGTCTATCATCTTCACCGCATAGGAACTACTTGATCACTCCAATGTTGCCTTCGCATCCTAGGGTTACATATGTCAATATGACTCTTTTCAATAAGTGGAAATCATTATCTTTAAAAGAATTTATGATAAGATGCTAGTTCAATTAGTTTAATGACCCTATCTTAAAGCTTCGCATCTGGTGGAGTAGAAGAAATTTAGAATTAGTTGGAAATTAGCACTCTTGTTTACAGTTAAAGAATGTTGGAATTCTAAATGTATCATGCAATAATGTATTGACAGCTTCCATATATATTTTAATTGTTATTTCATTTGCTTTCTCCTTTTCTCTGTCATCCCTTTTCCCTTATTCTGTATTGCTACAGTTCCTCACTTTTTTTTCTTTTATTTGCGTGTCTATAATTGTAATGTAGGTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGAGTATGTCTTTATTGATGTGGTCTCTGATCCATCTTATATGCAGTAGTATTCATAGTCACTCTGTACTTACTGTTTTTTCATGTTTCCTTCTATATGAGCAGATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAGGTACCCTGTTTCTAATATTAGTTAATTTTAATCACATTATCTCAGGTCTGTCTGGAGATTAATGACACTTATATATGAATGGTTTTTATTGGACAGGTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAGGTAGAACATCTTTGGCACTGGAGCTCTGCGTTGCTCAACCTCCCACCACCTAGTTTATTACATTTTATTTTTTGATCAACAACTTCTGAATCTGGTTTTGAATATCTATAGTTTATAGCCAAGGAAGGGGACACTGTCGAACCAGGCAATAAAGTTGCTATCATT</genome_strand>
        <mrna_strand>TTAAGCAGCTGTTCTTCGTGGGCGAAAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAG.........................................................................................................TTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCG...................................................................................................TGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTG..............................................................................GGTGCTCATCAAATTTGCGCCCAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGA.....................................................................................................ATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAG................................................................................................GTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAG...............................................................................................................TTTATAGCCAAGGAAAGGGACACTGTCGAACCANGCAATAAAGTTGCTATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720464" ref_strand="+" ref_description="SGN-E720464 [FC10DE12]">
      <seq>gagctgttcttcgtgggcgaaaattcaatcggcgccttcttctccaaccctacaatctcatcaaatttcactcttcttccattaatatcagttttaagagatcgagagctgcgatgttaggtgttttaaggcgcaaagctatttctagcgcctcttttacttcgtgtgtaaggaaatctctgcatacggttcgacctgcagtatgtaaatctagaattccatctgctgctgcagaagagatatcattgcttactagacaatgtggtcatgtgcgaaatttcaatcagcttgtgctgcctgggtgctcatcaaatttgcgcccagaaagggctgtgaccaatcttttctcaagtccaacactatcaaattggagcaggcctttctgcgcaaatagtggtgataccgttgacgctgttgttccatatatgggtgaatccattagtgatgggacactggccaagttcctgaagaatgttggtgacagagtagaagttgatgagccaattgctcagattgaaacagataaggtaaccattgatgttaccagtcctgaagctggtgtaatccaaaagtttatagccaaggaaggggacactgtcgaaccaggcaataaagttgctatcatttcaaaatctggtgagggtgtggaacatgttgctccatctgagaagtcctctgagaaagtagctcctgcagctgaggataagaaagaggaaaaggcaaaacctcaagttgagacaactcccgtcaaggagaagcctaagggaagttcacctccaccccctaaacgctctcctacagagctccaacttcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5199" stop="10327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5498" g_stop="5588" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5589" i_stop="5693" i_length="105">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5694" g_stop="5766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="164" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5767" i_stop="5865" i_length="99">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5866" g_stop="5940" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="239" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5941" i_stop="6904" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6905" g_stop="6965" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="300" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6966" i_stop="7043" i_length="78">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7044" g_stop="7071" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="328" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7072" i_stop="8247" i_length="1176">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8248" g_stop="8315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="396" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9300" g_stop="9374" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="471" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9375" i_stop="9475" i_length="101">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9476" g_stop="9531" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="527" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9532" i_stop="9627" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9628" g_stop="9672" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="572" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="9673" i_stop="9783" i_length="111">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="9784" g_stop="10027" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="816" r_length="244" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E720464" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5498" e_stop="5588"/>
          <exon e_start="5694" e_stop="5766"/>
          <exon e_start="5866" e_stop="5940"/>
          <exon e_start="6905" e_stop="6965"/>
          <exon e_start="7044" e_stop="7071"/>
          <exon e_start="8248" e_stop="8315"/>
          <exon e_start="9300" e_stop="9374"/>
          <exon e_start="9476" e_stop="9531"/>
          <exon e_start="9628" e_stop="9672"/>
          <exon e_start="9784" e_stop="10027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTGTTCTTCGTGGGCGAAAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAGGTCTAAAATCTTCATTATCACTGTTCATTTTCTCATATTACACAAGATCTGTTTACAGTGATTCGTACATTATTTTTTTTTTTTTTTGTTATATTGATTGAACAGTTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCGGTATGAATCGTGATTTAGTTTTATTGCGTTTGTTTTGATATATTAATTGCTGATATTTGTATAATGAGTTGCTGAAATTATTTGATTTTGCTGAACCAGTGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAGGTAATGTCTATTTATGAGCTATCCTCTTTTTTTTCATTTAAGTGATTGGAGTTCTTAATAGGATAGATAAATTGCTATTTTATGGAGGTAAAAAATTCGTTAAATTGATTTTGGAATACCTTTTGGCAAAAATATATAAATGATAAAGAAGAAAAAAGAACATTTCTCCTTTTAGCTCAAGTCAAGTTCACGGTATGTTAGATTTCAGCCATTTTTTGGATAAGCACATTTTTTTTTTGGATAACTGTGGCGTCTGGGTTAGCCTGCACCTCGACTAATTCCACGTGATATCTGTCATCTCCTACAAGCAACTAGTACCAAATAACTCTTATCCACCAAAGATATAATAGCTGCGAAGAATTCACTAGTCTTTTTGTCTATCGAGATTTGAACGTGAGACCTCATGATACTCAATCCACTTCATTGACCACGAAACCATGCCATTGGGTGCAGATGAGCACATTATTTATAGCCACATATTTGAGATACTTGATCATCATCATTTTGTCATTCATACTATTGATGATTGAATTTGACAGAACCGTTTTGATATTGGTACGTGTTACCTGGATAAGGATTATTGTTTTCTCTAGACTCTAGTACGGTAAATTTTTAAATTTATTAAGATTTTGATACAACAGTTTCGAATTTTGCAGTGTTGTACTCTTATTATAAGTATTGTTATGATTGCATGTGGCTATCCTTACTTTCTCATTATGCAATGTATTGGTACTAGCCTTTTTTTTGTGATCGATTCTATCACATTATGCTCTGACTTAGTACTATTCAGATTCCATGACATACTGTCTTATGGCAACCCTTCTAATACTTAACCATTCAGACTCTTATTTTTGTCCTTTGCCTCGTTATATTGAACATGAGCCTTCATGCTATTTGACTTGCTGCTGTTTTTTATTAACCCCATTTAAAAGGTCGTCGTGACATATTTTGAAAATGATAACAGATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTGGTATGTGTAACTAATCCATGATGACTCAGTGTATTTATACTGGTGTGCGATATAATTAGCTCCTACTTCTTAATCCAGGGTGCTCATCAAATTTGCGCCCAGAAAGGTTAGTATATATTATTGCTTAACACCTTTCATATATTATTTGAATCTTAGAGCATGAATAAATGCACAATGTATTTATAGAAGTAGCCATTCTATTTTTCTCTGTCTAGGTCAAACTCGGTAGAATTTTCCATTGCTTTATAGTTATATTATCTGCATTCATAGGGACCTAATCGGTGTTGTTGGATTTGCTTTGTATTTTCATTTGGTTGAATGAGTAACTAAAAGTTGAGACACTCCAATTAAATATTAATTACTTTGTGGATTGCCGGTGTGTGCATGTCCTTAGAGGAGACGGAGATAGTGGACCTCTGTCAGTGAATGTACATGTATCATAATGATAGTGTGTGCATGTCACATAACTTGATTTCAAAAGAGAAGTTTGTTCGATTAGTTAGTTTGTTGTGCACAACATCATATATTTTGAAATTGTCTTGAAGCATTTGGGATGTCCTAAAGTGATACCAATAGTGCCACTTTTTTTCATGTGTATATAACATCTTGTATAAAATATTTGCACTAAGCTAGTACAGTTAGCTTAGTCACAAGTTGTGCAAATCAGCTTTGTGTCTAAAATATCATTTACAACTTGTTCAAAAGCTAGTTTGCACCAAAACGCATCTAAGTTAAGGCACTGTATGCTTCTTCTTTTTGCCTTAAAAATTCTGCTATTTTTTTCTCTGAATGTCACATTTTCCCTTGTAGCCAATTAAAAGGACTCCTAGCAAATAACCGGGTAATGCAATTTGATCGGCTAACGTATAAAACACTTGAAGAAGTCTTGACATGAAGAAGATTATATTGAATTTCCATGCAAATTTAAAAAGGGATAGCAGTCAAAGATTGTTATATATGTTAACAATTTCAGTTGTTCTCTGCTAATCAAGCCTAGAAACTTCATTTTTGGTCCCACCGAAAATCATATATTGTCATAATTTATAATATGAATTTTACCCAATATGAAGTGTGTAGGTGTTGGGAATGTTCAGATACATCAATCTTTTACCTTGTTGTGATGCTTGGATTCATATATCTGACCTAACTTGTTTGGGATCGAGGCATATTTGTTGTTGTATGTTAATTAAAAAAAATACGATACTTGGTGATATGTTCATTCTCTCTCTCTCTCTCTCACACACACACCAGTTGGTTATATTAATTAGTGCATTGCTTGCAGGGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTGGTATATTTTTCTAATAATTTATCAAGCTTGCCTGGAACGCTGATGCAAATGAAATTAGTCACGACATGCTTACACTGTATATAGTATTGTTCAAAAATGTAATCTGGTCTCTTGGTATTGTTCCTGCAGTTCATCATGGTCCCAACTACCATCACATGTATTCTTTAGTACCTTTGAACTTATAAATTATCAGTTAGATACTCCTATGTCAGTTGTACCTTCTCTTCTAAATAATTATTATCTTCACATACTTTATTGAAGTTACCCTTTCTTTTCATCTTTTTTGGGATTGCGGTCTTATATGGAATTATATTATAGATACTTAAAAATGTGACATGTATCTTTTGATTGCCTATTATTGTACCAAATGATTGGCTGTTAGTTCTGGTCATTTGCAAATTTCTGTTTGGACGTGGAAGAAGTATTTGCGTTATCTACCTGGAGGATATAACTAGTTAACTCAATTTTAAAAAAATATAGCTAGTTAGCAGTTTCAACTCCGTATAAAGTTCTGTATCATCTATTGGATCGGGACTGCCATTATCATCAACATCGATGCCATCAAGAAGGGCCTGTCTATCATCTTCACCGCATAGGAACTACTTGATCACTCCAATGTTGCCTTCGCATCCTAGGGTTACATATGTCAATATGACTCTTTTCAATAAGTGGAAATCATTATCTTTAAAAGAATTTATGATAAGATGCTAGTTCAATTAGTTTAATGACCCTATCTTAAAGCTTCGCATCTGGTGGAGTAGAAGAAATTTAGAATTAGTTGGAAATTAGCACTCTTGTTTACAGTTAAAGAATGTTGGAATTCTAAATGTATCATGCAATAATGTATTGACAGCTTCCATATATATTTTAATTGTTATTTCATTTGCTTTCTCCTTTTCTCTGTCATCCCTTTTCCCTTATTCTGTATTGCTACAGTTCCTCACTTTTTTTTCTTTTATTTGCGTGTCTATAATTGTAATGTAGGTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGAGTATGTCTTTATTGATGTGGTCTCTGATCCATCTTATATGCAGTAGTATTCATAGTCACTCTGTACTTACTGTTTTTTCATGTTTCCTTCTATATGAGCAGATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAGGTACCCTGTTTCTAATATTAGTTAATTTTAATCACATTATCTCAGGTCTGTCTGGAGATTAATGACACTTATATATGAATGGTTTTTATTGGACAGGTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAGGTAGAACATCTTTGGCACTGGAGCTCTGCGTTGCTCAACCTCCCACCACCTAGTTTATTACATTTTATTTTTTGATCAACAACTTCTGAATCTGGTTTTGAATATCTATAGTTTATAGCCAAGGAAGGGGACACTGTCGAACCAGGCAATAAAGTTGCTATCATTTCAAAATCTGGTGAGGGTGTGGAACATGTTGCTCCATCTGAGAAGTCCTCTGAGAAAGTAGCTCCTGCAGCTGAGGATAAGAAAGAGGAAAAGGCAAAACCTCAAGTTGAGACAACTCCCGTCAAGGAGAAGCCTAAGGGAAGTTCACCTCCACCCCCTAAACGCTCTCCTACAGAGCTCCAACTTCCTC</genome_strand>
        <mrna_strand>GAGCTGTTCTTCGTGGGCGAAAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAG.........................................................................................................TTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCG...................................................................................................TGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTG..............................................................................GGTGCTCATCAAATTTGCGCCCAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGA.....................................................................................................ATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAG................................................................................................GTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAG...............................................................................................................TTTATAGCCAAGGAAGGGGACACTGTCGAACCAGGCAATAAAGTTGCTATCATTTCAAAATCTGGTGAGGGTGTGGAACATGTTGCTCCATCTGAGAAGTCCTCTGAGAAAGTAGCTCCTGCAGCTGAGGATAAGAAAGAGGAAAAGGCAAAACCTCAAGTTGAGACAACTCCCGTCAAGGAGAAGCCTAAGGGAAGTTCACCTCCACCCCCTAAACGCTCTCCTACAGAGCTCCAACTTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297054" ref_strand="+" ref_description="SGN-E297054 [cLEW-7-H19]">
      <seq>gttcttcgtgggcgaaaattcaatttgcgccttcttctccaaccctacaatctcatcaaatttcactcttcttccattaatatcagttttaagagatcgagagctgcgatgttaggtgttttaaggcgcaaagctatttctagcgcctcttttacttcgagtgtaaggaaatctctgcatacggttcgacctgcagtatgtaaatctagaattccatctgctgctgcagaagagatatcattgcttactagacaatgtggtcatgtgcgaaatttcaatcagcttgtgctgcctgggtgctcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5203" stop="7266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5503" g_stop="5588" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5589" i_stop="5693" i_length="105">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5694" g_stop="5766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="159" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5767" i_stop="5865" i_length="99">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5866" g_stop="5940" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="234" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5941" i_stop="6904" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6905" g_stop="6965" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="295" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6966" i_stop="7043" i_length="78">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7044" g_stop="7054" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="306" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E297054" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5503" e_stop="5588"/>
          <exon e_start="5694" e_stop="5766"/>
          <exon e_start="5866" e_stop="5940"/>
          <exon e_start="6905" e_stop="6965"/>
          <exon e_start="7044" e_stop="7054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTCGTGGGCGAAAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAGGTCTAAAATCTTCATTATCACTGTTCATTTTCTCATATTACACAAGATCTGTTTACAGTGATTCGTACATTATTTTTTTTTTTTTTTGTTATATTGATTGAACAGTTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCGGTATGAATCGTGATTTAGTTTTATTGCGTTTGTTTTGATATATTAATTGCTGATATTTGTATAATGAGTTGCTGAAATTATTTGATTTTGCTGAACCAGTGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAGGTAATGTCTATTTATGAGCTATCCTCTTTTTTTTCATTTAAGTGATTGGAGTTCTTAATAGGATAGATAAATTGCTATTTTATGGAGGTAAAAAATTCGTTAAATTGATTTTGGAATACCTTTTGGCAAAAATATATAAATGATAAAGAAGAAAAAAGAACATTTCTCCTTTTAGCTCAAGTCAAGTTCACGGTATGTTAGATTTCAGCCATTTTTTGGATAAGCACATTTTTTTTTTGGATAACTGTGGCGTCTGGGTTAGCCTGCACCTCGACTAATTCCACGTGATATCTGTCATCTCCTACAAGCAACTAGTACCAAATAACTCTTATCCACCAAAGATATAATAGCTGCGAAGAATTCACTAGTCTTTTTGTCTATCGAGATTTGAACGTGAGACCTCATGATACTCAATCCACTTCATTGACCACGAAACCATGCCATTGGGTGCAGATGAGCACATTATTTATAGCCACATATTTGAGATACTTGATCATCATCATTTTGTCATTCATACTATTGATGATTGAATTTGACAGAACCGTTTTGATATTGGTACGTGTTACCTGGATAAGGATTATTGTTTTCTCTAGACTCTAGTACGGTAAATTTTTAAATTTATTAAGATTTTGATACAACAGTTTCGAATTTTGCAGTGTTGTACTCTTATTATAAGTATTGTTATGATTGCATGTGGCTATCCTTACTTTCTCATTATGCAATGTATTGGTACTAGCCTTTTTTTTGTGATCGATTCTATCACATTATGCTCTGACTTAGTACTATTCAGATTCCATGACATACTGTCTTATGGCAACCCTTCTAATACTTAACCATTCAGACTCTTATTTTTGTCCTTTGCCTCGTTATATTGAACATGAGCCTTCATGCTATTTGACTTGCTGCTGTTTTTTATTAACCCCATTTAAAAGGTCGTCGTGACATATTTTGAAAATGATAACAGATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTGGTATGTGTAACTAATCCATGATGACTCAGTGTATTTATACTGGTGTGCGATATAATTAGCTCCTACTTCTTAATCCAGGGTGCTCATCA</genome_strand>
        <mrna_strand>GTTCTTCGTGGGCGAAAATTCAATTTGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAG.........................................................................................................TTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCG...................................................................................................AGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTG..............................................................................GGTGCTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271312" ref_strand="+" ref_description="SGN-E271312 [cLEM-5-D12]">
      <seq>gtgggcgaaaattcaatcggcgccttcttctccaaccctacaatctcatcaaatttcactcttcttccattaatatcagttttaagagatcgagagctgcgatgttaggtgttttaaggcgcaaagctatttctagcgcctcttttacttcgtgtgtaaggaaatctctgcatacggttcgacctgcagtatgtaaatctagaattccatctgctgctgcagaagagatatcattgcttactagacaatgtggtcatgtgcgaaatttcaatcagcttgtgctgcctgggtgctcatcaaatttgcgcccagaaagggctgtgaccaatcttttctcaagtccaacactatcaaattggagcaggcctttctgcgcaaatagtggtgataccgttgacgctgttgttccatatatgggtgaatccattagtgatgggacactggccaagttcctgaagaatgttggtgacagagtagaagttgatgagccaattgctcagattgaaacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5210" stop="9827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5510" g_stop="5588" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5589" i_stop="5693" i_length="105">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5694" g_stop="5766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="152" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5767" i_stop="5865" i_length="99">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5866" g_stop="5940" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="227" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5941" i_stop="6904" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6905" g_stop="6965" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="288" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6966" i_stop="7043" i_length="78">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7044" g_stop="7071" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="316" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7072" i_stop="8247" i_length="1176">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8248" g_stop="8315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="384" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9300" g_stop="9374" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="459" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9375" i_stop="9475" i_length="101">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9476" g_stop="9527" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="511" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E271312" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5510" e_stop="5588"/>
          <exon e_start="5694" e_stop="5766"/>
          <exon e_start="5866" e_stop="5940"/>
          <exon e_start="6905" e_stop="6965"/>
          <exon e_start="7044" e_stop="7071"/>
          <exon e_start="8248" e_stop="8315"/>
          <exon e_start="9300" e_stop="9374"/>
          <exon e_start="9476" e_stop="9527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGCGAAAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAGGTCTAAAATCTTCATTATCACTGTTCATTTTCTCATATTACACAAGATCTGTTTACAGTGATTCGTACATTATTTTTTTTTTTTTTTGTTATATTGATTGAACAGTTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCGGTATGAATCGTGATTTAGTTTTATTGCGTTTGTTTTGATATATTAATTGCTGATATTTGTATAATGAGTTGCTGAAATTATTTGATTTTGCTGAACCAGTGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAGGTAATGTCTATTTATGAGCTATCCTCTTTTTTTTCATTTAAGTGATTGGAGTTCTTAATAGGATAGATAAATTGCTATTTTATGGAGGTAAAAAATTCGTTAAATTGATTTTGGAATACCTTTTGGCAAAAATATATAAATGATAAAGAAGAAAAAAGAACATTTCTCCTTTTAGCTCAAGTCAAGTTCACGGTATGTTAGATTTCAGCCATTTTTTGGATAAGCACATTTTTTTTTTGGATAACTGTGGCGTCTGGGTTAGCCTGCACCTCGACTAATTCCACGTGATATCTGTCATCTCCTACAAGCAACTAGTACCAAATAACTCTTATCCACCAAAGATATAATAGCTGCGAAGAATTCACTAGTCTTTTTGTCTATCGAGATTTGAACGTGAGACCTCATGATACTCAATCCACTTCATTGACCACGAAACCATGCCATTGGGTGCAGATGAGCACATTATTTATAGCCACATATTTGAGATACTTGATCATCATCATTTTGTCATTCATACTATTGATGATTGAATTTGACAGAACCGTTTTGATATTGGTACGTGTTACCTGGATAAGGATTATTGTTTTCTCTAGACTCTAGTACGGTAAATTTTTAAATTTATTAAGATTTTGATACAACAGTTTCGAATTTTGCAGTGTTGTACTCTTATTATAAGTATTGTTATGATTGCATGTGGCTATCCTTACTTTCTCATTATGCAATGTATTGGTACTAGCCTTTTTTTTGTGATCGATTCTATCACATTATGCTCTGACTTAGTACTATTCAGATTCCATGACATACTGTCTTATGGCAACCCTTCTAATACTTAACCATTCAGACTCTTATTTTTGTCCTTTGCCTCGTTATATTGAACATGAGCCTTCATGCTATTTGACTTGCTGCTGTTTTTTATTAACCCCATTTAAAAGGTCGTCGTGACATATTTTGAAAATGATAACAGATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTGGTATGTGTAACTAATCCATGATGACTCAGTGTATTTATACTGGTGTGCGATATAATTAGCTCCTACTTCTTAATCCAGGGTGCTCATCAAATTTGCGCCCAGAAAGGTTAGTATATATTATTGCTTAACACCTTTCATATATTATTTGAATCTTAGAGCATGAATAAATGCACAATGTATTTATAGAAGTAGCCATTCTATTTTTCTCTGTCTAGGTCAAACTCGGTAGAATTTTCCATTGCTTTATAGTTATATTATCTGCATTCATAGGGACCTAATCGGTGTTGTTGGATTTGCTTTGTATTTTCATTTGGTTGAATGAGTAACTAAAAGTTGAGACACTCCAATTAAATATTAATTACTTTGTGGATTGCCGGTGTGTGCATGTCCTTAGAGGAGACGGAGATAGTGGACCTCTGTCAGTGAATGTACATGTATCATAATGATAGTGTGTGCATGTCACATAACTTGATTTCAAAAGAGAAGTTTGTTCGATTAGTTAGTTTGTTGTGCACAACATCATATATTTTGAAATTGTCTTGAAGCATTTGGGATGTCCTAAAGTGATACCAATAGTGCCACTTTTTTTCATGTGTATATAACATCTTGTATAAAATATTTGCACTAAGCTAGTACAGTTAGCTTAGTCACAAGTTGTGCAAATCAGCTTTGTGTCTAAAATATCATTTACAACTTGTTCAAAAGCTAGTTTGCACCAAAACGCATCTAAGTTAAGGCACTGTATGCTTCTTCTTTTTGCCTTAAAAATTCTGCTATTTTTTTCTCTGAATGTCACATTTTCCCTTGTAGCCAATTAAAAGGACTCCTAGCAAATAACCGGGTAATGCAATTTGATCGGCTAACGTATAAAACACTTGAAGAAGTCTTGACATGAAGAAGATTATATTGAATTTCCATGCAAATTTAAAAAGGGATAGCAGTCAAAGATTGTTATATATGTTAACAATTTCAGTTGTTCTCTGCTAATCAAGCCTAGAAACTTCATTTTTGGTCCCACCGAAAATCATATATTGTCATAATTTATAATATGAATTTTACCCAATATGAAGTGTGTAGGTGTTGGGAATGTTCAGATACATCAATCTTTTACCTTGTTGTGATGCTTGGATTCATATATCTGACCTAACTTGTTTGGGATCGAGGCATATTTGTTGTTGTATGTTAATTAAAAAAAATACGATACTTGGTGATATGTTCATTCTCTCTCTCTCTCTCTCACACACACACCAGTTGGTTATATTAATTAGTGCATTGCTTGCAGGGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTGGTATATTTTTCTAATAATTTATCAAGCTTGCCTGGAACGCTGATGCAAATGAAATTAGTCACGACATGCTTACACTGTATATAGTATTGTTCAAAAATGTAATCTGGTCTCTTGGTATTGTTCCTGCAGTTCATCATGGTCCCAACTACCATCACATGTATTCTTTAGTACCTTTGAACTTATAAATTATCAGTTAGATACTCCTATGTCAGTTGTACCTTCTCTTCTAAATAATTATTATCTTCACATACTTTATTGAAGTTACCCTTTCTTTTCATCTTTTTTGGGATTGCGGTCTTATATGGAATTATATTATAGATACTTAAAAATGTGACATGTATCTTTTGATTGCCTATTATTGTACCAAATGATTGGCTGTTAGTTCTGGTCATTTGCAAATTTCTGTTTGGACGTGGAAGAAGTATTTGCGTTATCTACCTGGAGGATATAACTAGTTAACTCAATTTTAAAAAAATATAGCTAGTTAGCAGTTTCAACTCCGTATAAAGTTCTGTATCATCTATTGGATCGGGACTGCCATTATCATCAACATCGATGCCATCAAGAAGGGCCTGTCTATCATCTTCACCGCATAGGAACTACTTGATCACTCCAATGTTGCCTTCGCATCCTAGGGTTACATATGTCAATATGACTCTTTTCAATAAGTGGAAATCATTATCTTTAAAAGAATTTATGATAAGATGCTAGTTCAATTAGTTTAATGACCCTATCTTAAAGCTTCGCATCTGGTGGAGTAGAAGAAATTTAGAATTAGTTGGAAATTAGCACTCTTGTTTACAGTTAAAGAATGTTGGAATTCTAAATGTATCATGCAATAATGTATTGACAGCTTCCATATATATTTTAATTGTTATTTCATTTGCTTTCTCCTTTTCTCTGTCATCCCTTTTCCCTTATTCTGTATTGCTACAGTTCCTCACTTTTTTTTCTTTTATTTGCGTGTCTATAATTGTAATGTAGGTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGAGTATGTCTTTATTGATGTGGTCTCTGATCCATCTTATATGCAGTAGTATTCATAGTCACTCTGTACTTACTGTTTTTTCATGTTTCCTTCTATATGAGCAGATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGA</genome_strand>
        <mrna_strand>GTGGGCGAAAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAG.........................................................................................................TTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCG...................................................................................................TGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTG..............................................................................GGTGCTCATCAAATTTGCGCCCAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGA.....................................................................................................ATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331626" ref_strand="+" ref_description="SGN-E331626 [cTOD-7-I5]">
      <seq>gtgggcgaaaattcaatcggcgccttcttctccaaccctacaatctcatcaaatttcactcttcttccattaatatcagttttaagagatcgagagctgcgatgttaggtgttttaaggcgcaaagctatttctagcgcctcttttacttcgtgtgtaaggaaatctctgcatacggttcgacctgcagtatgtaaatctagaattccatctgctgctgcagaagagatatcattgcttactagacaatgtggtcatgtgcgaaatttcaatcagcttgtgctgcctgggtgctcatcaaatttgcgcccagaaagggctgtgaccaatcttttctcaagtccaacactatcaaattggagcaggcctttctgcgcaaatagtggtgataccgttgacgctgttgttccatatatgggtgaatccattagtgatgggacactggccaagttcctgaagaatgttggtgacagagtagaagttgatgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5210" stop="9805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5510" g_stop="5588" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5589" i_stop="5693" i_length="105">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5694" g_stop="5766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="152" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5767" i_stop="5865" i_length="99">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5866" g_stop="5940" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="227" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5941" i_stop="6904" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6905" g_stop="6965" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="288" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6966" i_stop="7043" i_length="78">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7044" g_stop="7071" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="316" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7072" i_stop="8247" i_length="1176">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8248" g_stop="8315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="384" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9300" g_stop="9374" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="459" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9375" i_stop="9475" i_length="101">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9476" g_stop="9505" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="489" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E331626" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5510" e_stop="5588"/>
          <exon e_start="5694" e_stop="5766"/>
          <exon e_start="5866" e_stop="5940"/>
          <exon e_start="6905" e_stop="6965"/>
          <exon e_start="7044" e_stop="7071"/>
          <exon e_start="8248" e_stop="8315"/>
          <exon e_start="9300" e_stop="9374"/>
          <exon e_start="9476" e_stop="9505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGCGAAAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAGGTCTAAAATCTTCATTATCACTGTTCATTTTCTCATATTACACAAGATCTGTTTACAGTGATTCGTACATTATTTTTTTTTTTTTTTGTTATATTGATTGAACAGTTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCGGTATGAATCGTGATTTAGTTTTATTGCGTTTGTTTTGATATATTAATTGCTGATATTTGTATAATGAGTTGCTGAAATTATTTGATTTTGCTGAACCAGTGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAGGTAATGTCTATTTATGAGCTATCCTCTTTTTTTTCATTTAAGTGATTGGAGTTCTTAATAGGATAGATAAATTGCTATTTTATGGAGGTAAAAAATTCGTTAAATTGATTTTGGAATACCTTTTGGCAAAAATATATAAATGATAAAGAAGAAAAAAGAACATTTCTCCTTTTAGCTCAAGTCAAGTTCACGGTATGTTAGATTTCAGCCATTTTTTGGATAAGCACATTTTTTTTTTGGATAACTGTGGCGTCTGGGTTAGCCTGCACCTCGACTAATTCCACGTGATATCTGTCATCTCCTACAAGCAACTAGTACCAAATAACTCTTATCCACCAAAGATATAATAGCTGCGAAGAATTCACTAGTCTTTTTGTCTATCGAGATTTGAACGTGAGACCTCATGATACTCAATCCACTTCATTGACCACGAAACCATGCCATTGGGTGCAGATGAGCACATTATTTATAGCCACATATTTGAGATACTTGATCATCATCATTTTGTCATTCATACTATTGATGATTGAATTTGACAGAACCGTTTTGATATTGGTACGTGTTACCTGGATAAGGATTATTGTTTTCTCTAGACTCTAGTACGGTAAATTTTTAAATTTATTAAGATTTTGATACAACAGTTTCGAATTTTGCAGTGTTGTACTCTTATTATAAGTATTGTTATGATTGCATGTGGCTATCCTTACTTTCTCATTATGCAATGTATTGGTACTAGCCTTTTTTTTGTGATCGATTCTATCACATTATGCTCTGACTTAGTACTATTCAGATTCCATGACATACTGTCTTATGGCAACCCTTCTAATACTTAACCATTCAGACTCTTATTTTTGTCCTTTGCCTCGTTATATTGAACATGAGCCTTCATGCTATTTGACTTGCTGCTGTTTTTTATTAACCCCATTTAAAAGGTCGTCGTGACATATTTTGAAAATGATAACAGATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTGGTATGTGTAACTAATCCATGATGACTCAGTGTATTTATACTGGTGTGCGATATAATTAGCTCCTACTTCTTAATCCAGGGTGCTCATCAAATTTGCGCCCAGAAAGGTTAGTATATATTATTGCTTAACACCTTTCATATATTATTTGAATCTTAGAGCATGAATAAATGCACAATGTATTTATAGAAGTAGCCATTCTATTTTTCTCTGTCTAGGTCAAACTCGGTAGAATTTTCCATTGCTTTATAGTTATATTATCTGCATTCATAGGGACCTAATCGGTGTTGTTGGATTTGCTTTGTATTTTCATTTGGTTGAATGAGTAACTAAAAGTTGAGACACTCCAATTAAATATTAATTACTTTGTGGATTGCCGGTGTGTGCATGTCCTTAGAGGAGACGGAGATAGTGGACCTCTGTCAGTGAATGTACATGTATCATAATGATAGTGTGTGCATGTCACATAACTTGATTTCAAAAGAGAAGTTTGTTCGATTAGTTAGTTTGTTGTGCACAACATCATATATTTTGAAATTGTCTTGAAGCATTTGGGATGTCCTAAAGTGATACCAATAGTGCCACTTTTTTTCATGTGTATATAACATCTTGTATAAAATATTTGCACTAAGCTAGTACAGTTAGCTTAGTCACAAGTTGTGCAAATCAGCTTTGTGTCTAAAATATCATTTACAACTTGTTCAAAAGCTAGTTTGCACCAAAACGCATCTAAGTTAAGGCACTGTATGCTTCTTCTTTTTGCCTTAAAAATTCTGCTATTTTTTTCTCTGAATGTCACATTTTCCCTTGTAGCCAATTAAAAGGACTCCTAGCAAATAACCGGGTAATGCAATTTGATCGGCTAACGTATAAAACACTTGAAGAAGTCTTGACATGAAGAAGATTATATTGAATTTCCATGCAAATTTAAAAAGGGATAGCAGTCAAAGATTGTTATATATGTTAACAATTTCAGTTGTTCTCTGCTAATCAAGCCTAGAAACTTCATTTTTGGTCCCACCGAAAATCATATATTGTCATAATTTATAATATGAATTTTACCCAATATGAAGTGTGTAGGTGTTGGGAATGTTCAGATACATCAATCTTTTACCTTGTTGTGATGCTTGGATTCATATATCTGACCTAACTTGTTTGGGATCGAGGCATATTTGTTGTTGTATGTTAATTAAAAAAAATACGATACTTGGTGATATGTTCATTCTCTCTCTCTCTCTCTCACACACACACCAGTTGGTTATATTAATTAGTGCATTGCTTGCAGGGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTGGTATATTTTTCTAATAATTTATCAAGCTTGCCTGGAACGCTGATGCAAATGAAATTAGTCACGACATGCTTACACTGTATATAGTATTGTTCAAAAATGTAATCTGGTCTCTTGGTATTGTTCCTGCAGTTCATCATGGTCCCAACTACCATCACATGTATTCTTTAGTACCTTTGAACTTATAAATTATCAGTTAGATACTCCTATGTCAGTTGTACCTTCTCTTCTAAATAATTATTATCTTCACATACTTTATTGAAGTTACCCTTTCTTTTCATCTTTTTTGGGATTGCGGTCTTATATGGAATTATATTATAGATACTTAAAAATGTGACATGTATCTTTTGATTGCCTATTATTGTACCAAATGATTGGCTGTTAGTTCTGGTCATTTGCAAATTTCTGTTTGGACGTGGAAGAAGTATTTGCGTTATCTACCTGGAGGATATAACTAGTTAACTCAATTTTAAAAAAATATAGCTAGTTAGCAGTTTCAACTCCGTATAAAGTTCTGTATCATCTATTGGATCGGGACTGCCATTATCATCAACATCGATGCCATCAAGAAGGGCCTGTCTATCATCTTCACCGCATAGGAACTACTTGATCACTCCAATGTTGCCTTCGCATCCTAGGGTTACATATGTCAATATGACTCTTTTCAATAAGTGGAAATCATTATCTTTAAAAGAATTTATGATAAGATGCTAGTTCAATTAGTTTAATGACCCTATCTTAAAGCTTCGCATCTGGTGGAGTAGAAGAAATTTAGAATTAGTTGGAAATTAGCACTCTTGTTTACAGTTAAAGAATGTTGGAATTCTAAATGTATCATGCAATAATGTATTGACAGCTTCCATATATATTTTAATTGTTATTTCATTTGCTTTCTCCTTTTCTCTGTCATCCCTTTTCCCTTATTCTGTATTGCTACAGTTCCTCACTTTTTTTTCTTTTATTTGCGTGTCTATAATTGTAATGTAGGTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGAGTATGTCTTTATTGATGTGGTCTCTGATCCATCTTATATGCAGTAGTATTCATAGTCACTCTGTACTTACTGTTTTTTCATGTTTCCTTCTATATGAGCAGATGTTGGTGACAGAGTAGAAGTTGATGAGC</genome_strand>
        <mrna_strand>GTGGGCGAAAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAG.........................................................................................................TTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCG...................................................................................................TGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTG..............................................................................GGTGCTCATCAAATTTGCGCCCAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGA.....................................................................................................ATGTTGGTGACAGAGTAGAAGTTGATGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366208" ref_strand="+" ref_description="SGN-E366208 [cLPT-1-M11]">
      <seq>tgggcgaaaattcaatcggcgccttcttctccaaccctacaatctcatcaaatttcactcttcttccattaatatcagttttaagagatcgagagctgcgatgttaggtgttttaaggcgcaaagctatttctagcgcctcttttacttcgtgtgtaaggaaatctctgcatacggttcgacctgcagtatgtaaatctagaattccatctgctgctgcagaagagatatcattgcttactagacaatgtggtcatgtgcgaaatttcaatcagcttgtgctgcctgggtgctcgtcaaatttgcgcccagaaagggctgtgaccaatctttgctcaagtccaacactatcaaattggagcaggcctttctgcgcaaataggggtgacaccgttgacgctgttgttccatatatgggtgaatccataagtgatgggacactggccaagttcctgaagaatgttggtgacagagtagaagttgatgagccaattgctcagattgaaacagataaggtaaccattgatgttaccagtcctgaagctggtgtaatccaaaagtttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5211" stop="9977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5511" g_stop="5588" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5589" i_stop="5693" i_length="105">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5694" g_stop="5766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="151" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5767" i_stop="5865" i_length="99">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5866" g_stop="5940" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="226" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5941" i_stop="6904" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6905" g_stop="6965" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="287" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6966" i_stop="7043" i_length="78">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7044" g_stop="7071" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="315" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7072" i_stop="8247" i_length="1176">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8248" g_stop="8315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="383" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984">
            <donor d_prob="0.918" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9300" g_stop="9374" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="458" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9375" i_stop="9475" i_length="101">
            <donor d_prob="0.853" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9476" g_stop="9531" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="514" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9532" i_stop="9627" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9628" g_stop="9672" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="559" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="9673" i_stop="9783" i_length="111">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="9784" g_stop="9789" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="565" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E366208" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5511" e_stop="5588"/>
          <exon e_start="5694" e_stop="5766"/>
          <exon e_start="5866" e_stop="5940"/>
          <exon e_start="6905" e_stop="6965"/>
          <exon e_start="7044" e_stop="7071"/>
          <exon e_start="8248" e_stop="8315"/>
          <exon e_start="9300" e_stop="9374"/>
          <exon e_start="9476" e_stop="9531"/>
          <exon e_start="9628" e_stop="9672"/>
          <exon e_start="9784" e_stop="9789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGCGAAAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAGGTCTAAAATCTTCATTATCACTGTTCATTTTCTCATATTACACAAGATCTGTTTACAGTGATTCGTACATTATTTTTTTTTTTTTTTGTTATATTGATTGAACAGTTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCGGTATGAATCGTGATTTAGTTTTATTGCGTTTGTTTTGATATATTAATTGCTGATATTTGTATAATGAGTTGCTGAAATTATTTGATTTTGCTGAACCAGTGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAGGTAATGTCTATTTATGAGCTATCCTCTTTTTTTTCATTTAAGTGATTGGAGTTCTTAATAGGATAGATAAATTGCTATTTTATGGAGGTAAAAAATTCGTTAAATTGATTTTGGAATACCTTTTGGCAAAAATATATAAATGATAAAGAAGAAAAAAGAACATTTCTCCTTTTAGCTCAAGTCAAGTTCACGGTATGTTAGATTTCAGCCATTTTTTGGATAAGCACATTTTTTTTTTGGATAACTGTGGCGTCTGGGTTAGCCTGCACCTCGACTAATTCCACGTGATATCTGTCATCTCCTACAAGCAACTAGTACCAAATAACTCTTATCCACCAAAGATATAATAGCTGCGAAGAATTCACTAGTCTTTTTGTCTATCGAGATTTGAACGTGAGACCTCATGATACTCAATCCACTTCATTGACCACGAAACCATGCCATTGGGTGCAGATGAGCACATTATTTATAGCCACATATTTGAGATACTTGATCATCATCATTTTGTCATTCATACTATTGATGATTGAATTTGACAGAACCGTTTTGATATTGGTACGTGTTACCTGGATAAGGATTATTGTTTTCTCTAGACTCTAGTACGGTAAATTTTTAAATTTATTAAGATTTTGATACAACAGTTTCGAATTTTGCAGTGTTGTACTCTTATTATAAGTATTGTTATGATTGCATGTGGCTATCCTTACTTTCTCATTATGCAATGTATTGGTACTAGCCTTTTTTTTGTGATCGATTCTATCACATTATGCTCTGACTTAGTACTATTCAGATTCCATGACATACTGTCTTATGGCAACCCTTCTAATACTTAACCATTCAGACTCTTATTTTTGTCCTTTGCCTCGTTATATTGAACATGAGCCTTCATGCTATTTGACTTGCTGCTGTTTTTTATTAACCCCATTTAAAAGGTCGTCGTGACATATTTTGAAAATGATAACAGATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTGGTATGTGTAACTAATCCATGATGACTCAGTGTATTTATACTGGTGTGCGATATAATTAGCTCCTACTTCTTAATCCAGGGTGCTCATCAAATTTGCGCCCAGAAAGGTTAGTATATATTATTGCTTAACACCTTTCATATATTATTTGAATCTTAGAGCATGAATAAATGCACAATGTATTTATAGAAGTAGCCATTCTATTTTTCTCTGTCTAGGTCAAACTCGGTAGAATTTTCCATTGCTTTATAGTTATATTATCTGCATTCATAGGGACCTAATCGGTGTTGTTGGATTTGCTTTGTATTTTCATTTGGTTGAATGAGTAACTAAAAGTTGAGACACTCCAATTAAATATTAATTACTTTGTGGATTGCCGGTGTGTGCATGTCCTTAGAGGAGACGGAGATAGTGGACCTCTGTCAGTGAATGTACATGTATCATAATGATAGTGTGTGCATGTCACATAACTTGATTTCAAAAGAGAAGTTTGTTCGATTAGTTAGTTTGTTGTGCACAACATCATATATTTTGAAATTGTCTTGAAGCATTTGGGATGTCCTAAAGTGATACCAATAGTGCCACTTTTTTTCATGTGTATATAACATCTTGTATAAAATATTTGCACTAAGCTAGTACAGTTAGCTTAGTCACAAGTTGTGCAAATCAGCTTTGTGTCTAAAATATCATTTACAACTTGTTCAAAAGCTAGTTTGCACCAAAACGCATCTAAGTTAAGGCACTGTATGCTTCTTCTTTTTGCCTTAAAAATTCTGCTATTTTTTTCTCTGAATGTCACATTTTCCCTTGTAGCCAATTAAAAGGACTCCTAGCAAATAACCGGGTAATGCAATTTGATCGGCTAACGTATAAAACACTTGAAGAAGTCTTGACATGAAGAAGATTATATTGAATTTCCATGCAAATTTAAAAAGGGATAGCAGTCAAAGATTGTTATATATGTTAACAATTTCAGTTGTTCTCTGCTAATCAAGCCTAGAAACTTCATTTTTGGTCCCACCGAAAATCATATATTGTCATAATTTATAATATGAATTTTACCCAATATGAAGTGTGTAGGTGTTGGGAATGTTCAGATACATCAATCTTTTACCTTGTTGTGATGCTTGGATTCATATATCTGACCTAACTTGTTTGGGATCGAGGCATATTTGTTGTTGTATGTTAATTAAAAAAAATACGATACTTGGTGATATGTTCATTCTCTCTCTCTCTCTCTCACACACACACCAGTTGGTTATATTAATTAGTGCATTGCTTGCAGGGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTGGTATATTTTTCTAATAATTTATCAAGCTTGCCTGGAACGCTGATGCAAATGAAATTAGTCACGACATGCTTACACTGTATATAGTATTGTTCAAAAATGTAATCTGGTCTCTTGGTATTGTTCCTGCAGTTCATCATGGTCCCAACTACCATCACATGTATTCTTTAGTACCTTTGAACTTATAAATTATCAGTTAGATACTCCTATGTCAGTTGTACCTTCTCTTCTAAATAATTATTATCTTCACATACTTTATTGAAGTTACCCTTTCTTTTCATCTTTTTTGGGATTGCGGTCTTATATGGAATTATATTATAGATACTTAAAAATGTGACATGTATCTTTTGATTGCCTATTATTGTACCAAATGATTGGCTGTTAGTTCTGGTCATTTGCAAATTTCTGTTTGGACGTGGAAGAAGTATTTGCGTTATCTACCTGGAGGATATAACTAGTTAACTCAATTTTAAAAAAATATAGCTAGTTAGCAGTTTCAACTCCGTATAAAGTTCTGTATCATCTATTGGATCGGGACTGCCATTATCATCAACATCGATGCCATCAAGAAGGGCCTGTCTATCATCTTCACCGCATAGGAACTACTTGATCACTCCAATGTTGCCTTCGCATCCTAGGGTTACATATGTCAATATGACTCTTTTCAATAAGTGGAAATCATTATCTTTAAAAGAATTTATGATAAGATGCTAGTTCAATTAGTTTAATGACCCTATCTTAAAGCTTCGCATCTGGTGGAGTAGAAGAAATTTAGAATTAGTTGGAAATTAGCACTCTTGTTTACAGTTAAAGAATGTTGGAATTCTAAATGTATCATGCAATAATGTATTGACAGCTTCCATATATATTTTAATTGTTATTTCATTTGCTTTCTCCTTTTCTCTGTCATCCCTTTTCCCTTATTCTGTATTGCTACAGTTCCTCACTTTTTTTTCTTTTATTTGCGTGTCTATAATTGTAATGTAGGTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGAGTATGTCTTTATTGATGTGGTCTCTGATCCATCTTATATGCAGTAGTATTCATAGTCACTCTGTACTTACTGTTTTTTCATGTTTCCTTCTATATGAGCAGATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAGGTACCCTGTTTCTAATATTAGTTAATTTTAATCACATTATCTCAGGTCTGTCTGGAGATTAATGACACTTATATATGAATGGTTTTTATTGGACAGGTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAGGTAGAACATCTTTGGCACTGGAGCTCTGCGTTGCTCAACCTCCCACCACCTAGTTTATTACATTTTATTTTTTGATCAACAACTTCTGAATCTGGTTTTGAATATCTATAGTTTATA</genome_strand>
        <mrna_strand>TGGGCGAAAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAG.........................................................................................................TTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCG...................................................................................................TGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTG..............................................................................GGTGCTCGTCAAATTTGCGCCCAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGACCAATCTTTGCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATAAGTGATGGGACACTGGCCAAGTTCCTGAAGA.....................................................................................................ATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAG................................................................................................GTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAG...............................................................................................................TTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297366" ref_strand="+" ref_description="SGN-E297366 [cLEW-10-G5]">
      <seq>ggcgaaaattcaattttcgccttcttctccaaccctacaatctcatcaaatttcactcttcttccattaatatcagttctaagagatcgagagctgcgatgttaggtgttttaaggcgcaaagctatttctagcgcctcttttacttcgtgtgtaaggaaatctctgcatacggttcgacctgcagtatgtaaatctagaattccatctgctgctgcagaagagatatcattgcttactagacaatgtggtcatgtgcgaaatttcaatcagcttgtgctgcctgggtgctcatcaaatttgcgcccagaaagggctgtgaccaatcttttctcaagtccaacactatcaaattggagcaggcctttctgcgcaaatagtggtgataccgttgacgctgatgttccatatatgggtgaatccattagtgatgggacactggccaagttcctgaagaatgttggtgacagagtagaagttgatgagccaattgctcagattgaaacagataaggtaaccattgatgttaccagtcctgaagctggtgtaatccaaaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5230" stop="9974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5513" g_stop="5588" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5589" i_stop="5693" i_length="105">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5694" g_stop="5766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="149" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5767" i_stop="5865" i_length="99">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5866" g_stop="5940" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="224" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5941" i_stop="6904" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6905" g_stop="6965" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="285" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6966" i_stop="7043" i_length="78">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7044" g_stop="7071" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="313" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7072" i_stop="8247" i_length="1176">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8248" g_stop="8315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="381" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9300" g_stop="9374" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="456" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9375" i_stop="9475" i_length="101">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9476" g_stop="9531" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="512" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9532" i_stop="9627" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9628" g_stop="9672" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="557" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E297366" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5513" e_stop="5588"/>
          <exon e_start="5694" e_stop="5766"/>
          <exon e_start="5866" e_stop="5940"/>
          <exon e_start="6905" e_stop="6965"/>
          <exon e_start="7044" e_stop="7071"/>
          <exon e_start="8248" e_stop="8315"/>
          <exon e_start="9300" e_stop="9374"/>
          <exon e_start="9476" e_stop="9531"/>
          <exon e_start="9628" e_stop="9672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGAAAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAGGTCTAAAATCTTCATTATCACTGTTCATTTTCTCATATTACACAAGATCTGTTTACAGTGATTCGTACATTATTTTTTTTTTTTTTTGTTATATTGATTGAACAGTTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCGGTATGAATCGTGATTTAGTTTTATTGCGTTTGTTTTGATATATTAATTGCTGATATTTGTATAATGAGTTGCTGAAATTATTTGATTTTGCTGAACCAGTGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAGGTAATGTCTATTTATGAGCTATCCTCTTTTTTTTCATTTAAGTGATTGGAGTTCTTAATAGGATAGATAAATTGCTATTTTATGGAGGTAAAAAATTCGTTAAATTGATTTTGGAATACCTTTTGGCAAAAATATATAAATGATAAAGAAGAAAAAAGAACATTTCTCCTTTTAGCTCAAGTCAAGTTCACGGTATGTTAGATTTCAGCCATTTTTTGGATAAGCACATTTTTTTTTTGGATAACTGTGGCGTCTGGGTTAGCCTGCACCTCGACTAATTCCACGTGATATCTGTCATCTCCTACAAGCAACTAGTACCAAATAACTCTTATCCACCAAAGATATAATAGCTGCGAAGAATTCACTAGTCTTTTTGTCTATCGAGATTTGAACGTGAGACCTCATGATACTCAATCCACTTCATTGACCACGAAACCATGCCATTGGGTGCAGATGAGCACATTATTTATAGCCACATATTTGAGATACTTGATCATCATCATTTTGTCATTCATACTATTGATGATTGAATTTGACAGAACCGTTTTGATATTGGTACGTGTTACCTGGATAAGGATTATTGTTTTCTCTAGACTCTAGTACGGTAAATTTTTAAATTTATTAAGATTTTGATACAACAGTTTCGAATTTTGCAGTGTTGTACTCTTATTATAAGTATTGTTATGATTGCATGTGGCTATCCTTACTTTCTCATTATGCAATGTATTGGTACTAGCCTTTTTTTTGTGATCGATTCTATCACATTATGCTCTGACTTAGTACTATTCAGATTCCATGACATACTGTCTTATGGCAACCCTTCTAATACTTAACCATTCAGACTCTTATTTTTGTCCTTTGCCTCGTTATATTGAACATGAGCCTTCATGCTATTTGACTTGCTGCTGTTTTTTATTAACCCCATTTAAAAGGTCGTCGTGACATATTTTGAAAATGATAACAGATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTGGTATGTGTAACTAATCCATGATGACTCAGTGTATTTATACTGGTGTGCGATATAATTAGCTCCTACTTCTTAATCCAGGGTGCTCATCAAATTTGCGCCCAGAAAGGTTAGTATATATTATTGCTTAACACCTTTCATATATTATTTGAATCTTAGAGCATGAATAAATGCACAATGTATTTATAGAAGTAGCCATTCTATTTTTCTCTGTCTAGGTCAAACTCGGTAGAATTTTCCATTGCTTTATAGTTATATTATCTGCATTCATAGGGACCTAATCGGTGTTGTTGGATTTGCTTTGTATTTTCATTTGGTTGAATGAGTAACTAAAAGTTGAGACACTCCAATTAAATATTAATTACTTTGTGGATTGCCGGTGTGTGCATGTCCTTAGAGGAGACGGAGATAGTGGACCTCTGTCAGTGAATGTACATGTATCATAATGATAGTGTGTGCATGTCACATAACTTGATTTCAAAAGAGAAGTTTGTTCGATTAGTTAGTTTGTTGTGCACAACATCATATATTTTGAAATTGTCTTGAAGCATTTGGGATGTCCTAAAGTGATACCAATAGTGCCACTTTTTTTCATGTGTATATAACATCTTGTATAAAATATTTGCACTAAGCTAGTACAGTTAGCTTAGTCACAAGTTGTGCAAATCAGCTTTGTGTCTAAAATATCATTTACAACTTGTTCAAAAGCTAGTTTGCACCAAAACGCATCTAAGTTAAGGCACTGTATGCTTCTTCTTTTTGCCTTAAAAATTCTGCTATTTTTTTCTCTGAATGTCACATTTTCCCTTGTAGCCAATTAAAAGGACTCCTAGCAAATAACCGGGTAATGCAATTTGATCGGCTAACGTATAAAACACTTGAAGAAGTCTTGACATGAAGAAGATTATATTGAATTTCCATGCAAATTTAAAAAGGGATAGCAGTCAAAGATTGTTATATATGTTAACAATTTCAGTTGTTCTCTGCTAATCAAGCCTAGAAACTTCATTTTTGGTCCCACCGAAAATCATATATTGTCATAATTTATAATATGAATTTTACCCAATATGAAGTGTGTAGGTGTTGGGAATGTTCAGATACATCAATCTTTTACCTTGTTGTGATGCTTGGATTCATATATCTGACCTAACTTGTTTGGGATCGAGGCATATTTGTTGTTGTATGTTAATTAAAAAAAATACGATACTTGGTGATATGTTCATTCTCTCTCTCTCTCTCTCACACACACACCAGTTGGTTATATTAATTAGTGCATTGCTTGCAGGGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTGGTATATTTTTCTAATAATTTATCAAGCTTGCCTGGAACGCTGATGCAAATGAAATTAGTCACGACATGCTTACACTGTATATAGTATTGTTCAAAAATGTAATCTGGTCTCTTGGTATTGTTCCTGCAGTTCATCATGGTCCCAACTACCATCACATGTATTCTTTAGTACCTTTGAACTTATAAATTATCAGTTAGATACTCCTATGTCAGTTGTACCTTCTCTTCTAAATAATTATTATCTTCACATACTTTATTGAAGTTACCCTTTCTTTTCATCTTTTTTGGGATTGCGGTCTTATATGGAATTATATTATAGATACTTAAAAATGTGACATGTATCTTTTGATTGCCTATTATTGTACCAAATGATTGGCTGTTAGTTCTGGTCATTTGCAAATTTCTGTTTGGACGTGGAAGAAGTATTTGCGTTATCTACCTGGAGGATATAACTAGTTAACTCAATTTTAAAAAAATATAGCTAGTTAGCAGTTTCAACTCCGTATAAAGTTCTGTATCATCTATTGGATCGGGACTGCCATTATCATCAACATCGATGCCATCAAGAAGGGCCTGTCTATCATCTTCACCGCATAGGAACTACTTGATCACTCCAATGTTGCCTTCGCATCCTAGGGTTACATATGTCAATATGACTCTTTTCAATAAGTGGAAATCATTATCTTTAAAAGAATTTATGATAAGATGCTAGTTCAATTAGTTTAATGACCCTATCTTAAAGCTTCGCATCTGGTGGAGTAGAAGAAATTTAGAATTAGTTGGAAATTAGCACTCTTGTTTACAGTTAAAGAATGTTGGAATTCTAAATGTATCATGCAATAATGTATTGACAGCTTCCATATATATTTTAATTGTTATTTCATTTGCTTTCTCCTTTTCTCTGTCATCCCTTTTCCCTTATTCTGTATTGCTACAGTTCCTCACTTTTTTTTCTTTTATTTGCGTGTCTATAATTGTAATGTAGGTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGAGTATGTCTTTATTGATGTGGTCTCTGATCCATCTTATATGCAGTAGTATTCATAGTCACTCTGTACTTACTGTTTTTTCATGTTTCCTTCTATATGAGCAGATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAGGTACCCTGTTTCTAATATTAGTTAATTTTAATCACATTATCTCAGGTCTGTCTGGAGATTAATGACACTTATATATGAATGGTTTTTATTGGACAGGTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAG</genome_strand>
        <mrna_strand>GGCGAAAATTCAATTTTCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAG.........................................................................................................TTCTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCG...................................................................................................TGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTG..............................................................................GGTGCTCATCAAATTTGCGCCCAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACCGTTGACGCTGATGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGA.....................................................................................................ATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAG................................................................................................GTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327572" ref_strand="+" ref_description="SGN-E327572 [cTOC-20-G12]">
      <seq>aaaattcaatcggcgccttcttctccaaccctacaatctcatcaaatttcactcttcttccattaatatcagttttaagagatcgagagctgcgatgttaggtgttttaaggcgcaaagctatttctagcgcctcttttacttcgtgtgtaaggaaatctctgcatacggttcgacctgcagtatgtaaatctagaattccatctgctgctgcagaagagatatcattgcttactagacaatgtggtcatgtgcgaaatttcaatcagcttgtgctgcctgggtgctcatcaaatttgcgcccagaaagggctgtgaccaatcttttctcaagtccaacactatcaaattggagcaggcctttctgcgcaaatagtggtgataccgttgacgctgttgttccatatatgggtgaatccattagtgatgggacactggccaagttcctgaagaatgttggtgacagagtagaagttgatgagccaattgctcagattgaaacagataaggtaaccattgatgttaccagtcctgaagctggtgtaatccaaaagtttatagccaaggaaggggacactgtcgaaccaggcaataaagttgctatcatttcaaaatcttggtgagggtgtggaacatgttgctccatctgagaagtcctctgagaaagtagctcctgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5217" stop="10207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5517" g_stop="5588" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5589" i_stop="5693" i_length="105">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5694" g_stop="5766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="145" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5767" i_stop="5865" i_length="99">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5866" g_stop="5940" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="220" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5941" i_stop="6904" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6905" g_stop="6965" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="281" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6966" i_stop="7043" i_length="78">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7044" g_stop="7071" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="309" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7072" i_stop="8247" i_length="1176">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8248" g_stop="8315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="377" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9300" g_stop="9374" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="452" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9375" i_stop="9475" i_length="101">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9476" g_stop="9531" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="508" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9532" i_stop="9627" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9628" g_stop="9672" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="553" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="9673" i_stop="9783" i_length="111">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="9784" g_stop="9907" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="678" r_length="125" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E327572" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5517" e_stop="5588"/>
          <exon e_start="5694" e_stop="5766"/>
          <exon e_start="5866" e_stop="5940"/>
          <exon e_start="6905" e_stop="6965"/>
          <exon e_start="7044" e_stop="7071"/>
          <exon e_start="8248" e_stop="8315"/>
          <exon e_start="9300" e_stop="9374"/>
          <exon e_start="9476" e_stop="9531"/>
          <exon e_start="9628" e_stop="9672"/>
          <exon e_start="9784" e_stop="9907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAGGTCTAAAATCTTCATTATCACTGTTCATTTTCTCATATTACACAAGATCTGTTTACAGTGATTCGTACATTATTTTTTTTTTTTTTTGTTATATTGATTGAACAGTTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCGGTATGAATCGTGATTTAGTTTTATTGCGTTTGTTTTGATATATTAATTGCTGATATTTGTATAATGAGTTGCTGAAATTATTTGATTTTGCTGAACCAGTGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAGGTAATGTCTATTTATGAGCTATCCTCTTTTTTTTCATTTAAGTGATTGGAGTTCTTAATAGGATAGATAAATTGCTATTTTATGGAGGTAAAAAATTCGTTAAATTGATTTTGGAATACCTTTTGGCAAAAATATATAAATGATAAAGAAGAAAAAAGAACATTTCTCCTTTTAGCTCAAGTCAAGTTCACGGTATGTTAGATTTCAGCCATTTTTTGGATAAGCACATTTTTTTTTTGGATAACTGTGGCGTCTGGGTTAGCCTGCACCTCGACTAATTCCACGTGATATCTGTCATCTCCTACAAGCAACTAGTACCAAATAACTCTTATCCACCAAAGATATAATAGCTGCGAAGAATTCACTAGTCTTTTTGTCTATCGAGATTTGAACGTGAGACCTCATGATACTCAATCCACTTCATTGACCACGAAACCATGCCATTGGGTGCAGATGAGCACATTATTTATAGCCACATATTTGAGATACTTGATCATCATCATTTTGTCATTCATACTATTGATGATTGAATTTGACAGAACCGTTTTGATATTGGTACGTGTTACCTGGATAAGGATTATTGTTTTCTCTAGACTCTAGTACGGTAAATTTTTAAATTTATTAAGATTTTGATACAACAGTTTCGAATTTTGCAGTGTTGTACTCTTATTATAAGTATTGTTATGATTGCATGTGGCTATCCTTACTTTCTCATTATGCAATGTATTGGTACTAGCCTTTTTTTTGTGATCGATTCTATCACATTATGCTCTGACTTAGTACTATTCAGATTCCATGACATACTGTCTTATGGCAACCCTTCTAATACTTAACCATTCAGACTCTTATTTTTGTCCTTTGCCTCGTTATATTGAACATGAGCCTTCATGCTATTTGACTTGCTGCTGTTTTTTATTAACCCCATTTAAAAGGTCGTCGTGACATATTTTGAAAATGATAACAGATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTGGTATGTGTAACTAATCCATGATGACTCAGTGTATTTATACTGGTGTGCGATATAATTAGCTCCTACTTCTTAATCCAGGGTGCTCATCAAATTTGCGCCCAGAAAGGTTAGTATATATTATTGCTTAACACCTTTCATATATTATTTGAATCTTAGAGCATGAATAAATGCACAATGTATTTATAGAAGTAGCCATTCTATTTTTCTCTGTCTAGGTCAAACTCGGTAGAATTTTCCATTGCTTTATAGTTATATTATCTGCATTCATAGGGACCTAATCGGTGTTGTTGGATTTGCTTTGTATTTTCATTTGGTTGAATGAGTAACTAAAAGTTGAGACACTCCAATTAAATATTAATTACTTTGTGGATTGCCGGTGTGTGCATGTCCTTAGAGGAGACGGAGATAGTGGACCTCTGTCAGTGAATGTACATGTATCATAATGATAGTGTGTGCATGTCACATAACTTGATTTCAAAAGAGAAGTTTGTTCGATTAGTTAGTTTGTTGTGCACAACATCATATATTTTGAAATTGTCTTGAAGCATTTGGGATGTCCTAAAGTGATACCAATAGTGCCACTTTTTTTCATGTGTATATAACATCTTGTATAAAATATTTGCACTAAGCTAGTACAGTTAGCTTAGTCACAAGTTGTGCAAATCAGCTTTGTGTCTAAAATATCATTTACAACTTGTTCAAAAGCTAGTTTGCACCAAAACGCATCTAAGTTAAGGCACTGTATGCTTCTTCTTTTTGCCTTAAAAATTCTGCTATTTTTTTCTCTGAATGTCACATTTTCCCTTGTAGCCAATTAAAAGGACTCCTAGCAAATAACCGGGTAATGCAATTTGATCGGCTAACGTATAAAACACTTGAAGAAGTCTTGACATGAAGAAGATTATATTGAATTTCCATGCAAATTTAAAAAGGGATAGCAGTCAAAGATTGTTATATATGTTAACAATTTCAGTTGTTCTCTGCTAATCAAGCCTAGAAACTTCATTTTTGGTCCCACCGAAAATCATATATTGTCATAATTTATAATATGAATTTTACCCAATATGAAGTGTGTAGGTGTTGGGAATGTTCAGATACATCAATCTTTTACCTTGTTGTGATGCTTGGATTCATATATCTGACCTAACTTGTTTGGGATCGAGGCATATTTGTTGTTGTATGTTAATTAAAAAAAATACGATACTTGGTGATATGTTCATTCTCTCTCTCTCTCTCTCACACACACACCAGTTGGTTATATTAATTAGTGCATTGCTTGCAGGGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTGGTATATTTTTCTAATAATTTATCAAGCTTGCCTGGAACGCTGATGCAAATGAAATTAGTCACGACATGCTTACACTGTATATAGTATTGTTCAAAAATGTAATCTGGTCTCTTGGTATTGTTCCTGCAGTTCATCATGGTCCCAACTACCATCACATGTATTCTTTAGTACCTTTGAACTTATAAATTATCAGTTAGATACTCCTATGTCAGTTGTACCTTCTCTTCTAAATAATTATTATCTTCACATACTTTATTGAAGTTACCCTTTCTTTTCATCTTTTTTGGGATTGCGGTCTTATATGGAATTATATTATAGATACTTAAAAATGTGACATGTATCTTTTGATTGCCTATTATTGTACCAAATGATTGGCTGTTAGTTCTGGTCATTTGCAAATTTCTGTTTGGACGTGGAAGAAGTATTTGCGTTATCTACCTGGAGGATATAACTAGTTAACTCAATTTTAAAAAAATATAGCTAGTTAGCAGTTTCAACTCCGTATAAAGTTCTGTATCATCTATTGGATCGGGACTGCCATTATCATCAACATCGATGCCATCAAGAAGGGCCTGTCTATCATCTTCACCGCATAGGAACTACTTGATCACTCCAATGTTGCCTTCGCATCCTAGGGTTACATATGTCAATATGACTCTTTTCAATAAGTGGAAATCATTATCTTTAAAAGAATTTATGATAAGATGCTAGTTCAATTAGTTTAATGACCCTATCTTAAAGCTTCGCATCTGGTGGAGTAGAAGAAATTTAGAATTAGTTGGAAATTAGCACTCTTGTTTACAGTTAAAGAATGTTGGAATTCTAAATGTATCATGCAATAATGTATTGACAGCTTCCATATATATTTTAATTGTTATTTCATTTGCTTTCTCCTTTTCTCTGTCATCCCTTTTCCCTTATTCTGTATTGCTACAGTTCCTCACTTTTTTTTCTTTTATTTGCGTGTCTATAATTGTAATGTAGGTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGAGTATGTCTTTATTGATGTGGTCTCTGATCCATCTTATATGCAGTAGTATTCATAGTCACTCTGTACTTACTGTTTTTTCATGTTTCCTTCTATATGAGCAGATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAGGTACCCTGTTTCTAATATTAGTTAATTTTAATCACATTATCTCAGGTCTGTCTGGAGATTAATGACACTTATATATGAATGGTTTTTATTGGACAGGTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAGGTAGAACATCTTTGGCACTGGAGCTCTGCGTTGCTCAACCTCCCACCACCTAGTTTATTACATTTTATTTTTTGATCAACAACTTCTGAATCTGGTTTTGAATATCTATAGTTTATAGCCAAGGAAGGGGACACTGTCGAACCAGGCAATAAAGTTGCTATCATTTCAAAATC-TGGTGAGGGTGTGGAACATGTTGCTCCATCTGAGAAGTCCTCTGAGAAAGTAGCTCCTGCAG</genome_strand>
        <mrna_strand>AAAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAG.........................................................................................................TTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCG...................................................................................................TGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTG..............................................................................GGTGCTCATCAAATTTGCGCCCAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGA.....................................................................................................ATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAG................................................................................................GTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAG...............................................................................................................TTTATAGCCAAGGAAGGGGACACTGTCGAACCAGGCAATAAAGTTGCTATCATTTCAAAATCTTGGTGAGGGTGTGGAACATGTTGCTCCATCTGAGAAGTCCTCTGAGAAAGTAGCTCCTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268927" ref_strand="+" ref_description="SGN-E268927 [cLEM-4-F18]">
      <seq>aaattcaatcggcgccttcttctccaaccctacaatctcatcaaatttcactcttcttccattaatatcagttttaagagatcgagagctgcgatgttaggtgtcttaaggcgccaaagctatttctagcgcctcttttacttcgtgtgtaaggaaatctctgcatacggttcgacctgcagtatgtaaatctagaattccatctgctgctgcagaagagatatcattgcttactagacaatgtggtcatgtgcgaaatttcaatcagcttgtgctgcctgggtgctcatcaaatttgcgcccagaaagggctgtgaccaatcttttctcaagtccaacactatcaaattggagcaggcctttctgcgcaaatagtggtgataccgttgacgctgttgttccatatatgggtgaatccattagtgatgggacactggccaagttcctgaagaatgttggtgacagagtacaagttgatgagccaattgctcagattgaaacagataacgtaaccattgatgttaccagtcctgaagctggtgtaatccaaaagtttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5218" stop="9977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5518" g_stop="5588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5589" i_stop="5693" i_length="105">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5694" g_stop="5766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="145" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5767" i_stop="5865" i_length="99">
            <donor d_prob="0.870" d_score="0.94"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5866" g_stop="5940" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="220" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5941" i_stop="6904" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6905" g_stop="6965" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="281" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6966" i_stop="7043" i_length="78">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7044" g_stop="7071" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="309" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7072" i_stop="8247" i_length="1176">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8248" g_stop="8315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="377" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9300" g_stop="9374" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="452" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9375" i_stop="9475" i_length="101">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9476" g_stop="9531" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="508" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9532" i_stop="9627" i_length="96">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9628" g_stop="9672" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="553" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="9673" i_stop="9783" i_length="111">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="9784" g_stop="9789" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="559" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E268927" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5518" e_stop="5588"/>
          <exon e_start="5694" e_stop="5766"/>
          <exon e_start="5866" e_stop="5940"/>
          <exon e_start="6905" e_stop="6965"/>
          <exon e_start="7044" e_stop="7071"/>
          <exon e_start="8248" e_stop="8315"/>
          <exon e_start="9300" e_stop="9374"/>
          <exon e_start="9476" e_stop="9531"/>
          <exon e_start="9628" e_stop="9672"/>
          <exon e_start="9784" e_stop="9789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAGGTCTAAAATCTTCATTATCACTGTTCATTTTCTCATATTACACAAGATCTGTTTACAGTGATTCGTACATTATTTTTTTTTTTTTTTGTTATATTGATTGAACAGTTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCG-CAAAGCTATTTCTAGCGCCTCTTTTACTTCGGTATGAATCGTGATTTAGTTTTATTGCGTTTGTTTTGATATATTAATTGCTGATATTTGTATAATGAGTTGCTGAAATTATTTGATTTTGCTGAACCAGTGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAGGTAATGTCTATTTATGAGCTATCCTCTTTTTTTTCATTTAAGTGATTGGAGTTCTTAATAGGATAGATAAATTGCTATTTTATGGAGGTAAAAAATTCGTTAAATTGATTTTGGAATACCTTTTGGCAAAAATATATAAATGATAAAGAAGAAAAAAGAACATTTCTCCTTTTAGCTCAAGTCAAGTTCACGGTATGTTAGATTTCAGCCATTTTTTGGATAAGCACATTTTTTTTTTGGATAACTGTGGCGTCTGGGTTAGCCTGCACCTCGACTAATTCCACGTGATATCTGTCATCTCCTACAAGCAACTAGTACCAAATAACTCTTATCCACCAAAGATATAATAGCTGCGAAGAATTCACTAGTCTTTTTGTCTATCGAGATTTGAACGTGAGACCTCATGATACTCAATCCACTTCATTGACCACGAAACCATGCCATTGGGTGCAGATGAGCACATTATTTATAGCCACATATTTGAGATACTTGATCATCATCATTTTGTCATTCATACTATTGATGATTGAATTTGACAGAACCGTTTTGATATTGGTACGTGTTACCTGGATAAGGATTATTGTTTTCTCTAGACTCTAGTACGGTAAATTTTTAAATTTATTAAGATTTTGATACAACAGTTTCGAATTTTGCAGTGTTGTACTCTTATTATAAGTATTGTTATGATTGCATGTGGCTATCCTTACTTTCTCATTATGCAATGTATTGGTACTAGCCTTTTTTTTGTGATCGATTCTATCACATTATGCTCTGACTTAGTACTATTCAGATTCCATGACATACTGTCTTATGGCAACCCTTCTAATACTTAACCATTCAGACTCTTATTTTTGTCCTTTGCCTCGTTATATTGAACATGAGCCTTCATGCTATTTGACTTGCTGCTGTTTTTTATTAACCCCATTTAAAAGGTCGTCGTGACATATTTTGAAAATGATAACAGATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTGGTATGTGTAACTAATCCATGATGACTCAGTGTATTTATACTGGTGTGCGATATAATTAGCTCCTACTTCTTAATCCAGGGTGCTCATCAAATTTGCGCCCAGAAAGGTTAGTATATATTATTGCTTAACACCTTTCATATATTATTTGAATCTTAGAGCATGAATAAATGCACAATGTATTTATAGAAGTAGCCATTCTATTTTTCTCTGTCTAGGTCAAACTCGGTAGAATTTTCCATTGCTTTATAGTTATATTATCTGCATTCATAGGGACCTAATCGGTGTTGTTGGATTTGCTTTGTATTTTCATTTGGTTGAATGAGTAACTAAAAGTTGAGACACTCCAATTAAATATTAATTACTTTGTGGATTGCCGGTGTGTGCATGTCCTTAGAGGAGACGGAGATAGTGGACCTCTGTCAGTGAATGTACATGTATCATAATGATAGTGTGTGCATGTCACATAACTTGATTTCAAAAGAGAAGTTTGTTCGATTAGTTAGTTTGTTGTGCACAACATCATATATTTTGAAATTGTCTTGAAGCATTTGGGATGTCCTAAAGTGATACCAATAGTGCCACTTTTTTTCATGTGTATATAACATCTTGTATAAAATATTTGCACTAAGCTAGTACAGTTAGCTTAGTCACAAGTTGTGCAAATCAGCTTTGTGTCTAAAATATCATTTACAACTTGTTCAAAAGCTAGTTTGCACCAAAACGCATCTAAGTTAAGGCACTGTATGCTTCTTCTTTTTGCCTTAAAAATTCTGCTATTTTTTTCTCTGAATGTCACATTTTCCCTTGTAGCCAATTAAAAGGACTCCTAGCAAATAACCGGGTAATGCAATTTGATCGGCTAACGTATAAAACACTTGAAGAAGTCTTGACATGAAGAAGATTATATTGAATTTCCATGCAAATTTAAAAAGGGATAGCAGTCAAAGATTGTTATATATGTTAACAATTTCAGTTGTTCTCTGCTAATCAAGCCTAGAAACTTCATTTTTGGTCCCACCGAAAATCATATATTGTCATAATTTATAATATGAATTTTACCCAATATGAAGTGTGTAGGTGTTGGGAATGTTCAGATACATCAATCTTTTACCTTGTTGTGATGCTTGGATTCATATATCTGACCTAACTTGTTTGGGATCGAGGCATATTTGTTGTTGTATGTTAATTAAAAAAAATACGATACTTGGTGATATGTTCATTCTCTCTCTCTCTCTCTCACACACACACCAGTTGGTTATATTAATTAGTGCATTGCTTGCAGGGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTGGTATATTTTTCTAATAATTTATCAAGCTTGCCTGGAACGCTGATGCAAATGAAATTAGTCACGACATGCTTACACTGTATATAGTATTGTTCAAAAATGTAATCTGGTCTCTTGGTATTGTTCCTGCAGTTCATCATGGTCCCAACTACCATCACATGTATTCTTTAGTACCTTTGAACTTATAAATTATCAGTTAGATACTCCTATGTCAGTTGTACCTTCTCTTCTAAATAATTATTATCTTCACATACTTTATTGAAGTTACCCTTTCTTTTCATCTTTTTTGGGATTGCGGTCTTATATGGAATTATATTATAGATACTTAAAAATGTGACATGTATCTTTTGATTGCCTATTATTGTACCAAATGATTGGCTGTTAGTTCTGGTCATTTGCAAATTTCTGTTTGGACGTGGAAGAAGTATTTGCGTTATCTACCTGGAGGATATAACTAGTTAACTCAATTTTAAAAAAATATAGCTAGTTAGCAGTTTCAACTCCGTATAAAGTTCTGTATCATCTATTGGATCGGGACTGCCATTATCATCAACATCGATGCCATCAAGAAGGGCCTGTCTATCATCTTCACCGCATAGGAACTACTTGATCACTCCAATGTTGCCTTCGCATCCTAGGGTTACATATGTCAATATGACTCTTTTCAATAAGTGGAAATCATTATCTTTAAAAGAATTTATGATAAGATGCTAGTTCAATTAGTTTAATGACCCTATCTTAAAGCTTCGCATCTGGTGGAGTAGAAGAAATTTAGAATTAGTTGGAAATTAGCACTCTTGTTTACAGTTAAAGAATGTTGGAATTCTAAATGTATCATGCAATAATGTATTGACAGCTTCCATATATATTTTAATTGTTATTTCATTTGCTTTCTCCTTTTCTCTGTCATCCCTTTTCCCTTATTCTGTATTGCTACAGTTCCTCACTTTTTTTTCTTTTATTTGCGTGTCTATAATTGTAATGTAGGTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGAGTATGTCTTTATTGATGTGGTCTCTGATCCATCTTATATGCAGTAGTATTCATAGTCACTCTGTACTTACTGTTTTTTCATGTTTCCTTCTATATGAGCAGATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAGGTACCCTGTTTCTAATATTAGTTAATTTTAATCACATTATCTCAGGTCTGTCTGGAGATTAATGACACTTATATATGAATGGTTTTTATTGGACAGGTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAGGTAGAACATCTTTGGCACTGGAGCTCTGCGTTGCTCAACCTCCCACCACCTAGTTTATTACATTTTATTTTTTGATCAACAACTTCTGAATCTGGTTTTGAATATCTATAGTTTATA</genome_strand>
        <mrna_strand>AAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAG.........................................................................................................TTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTCTTAAGGCGCCAAAGCTATTTCTAGCGCCTCTTTTACTTCG...................................................................................................TGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTG..............................................................................GGTGCTCATCAAATTTGCGCCCAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGA.....................................................................................................ATGTTGGTGACAGAGTACAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAC................................................................................................GTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAG...............................................................................................................TTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366210" ref_strand="+" ref_description="SGN-E366210 [cLPT-1-M13]">
      <seq>aaattcaatcggcgccttcttgtgcaaccctacaatctcatcaaatcccactcttcttccattaatatcagttttaagagatcgagagctgcgatgttaggtgttttaaggcgcaaagctatttctagcgcctcttttacttcgtgtgtaaggaaatctctgcatacggttcgacctgcagtatgtaaatctagaattccatctgctgctgcagaagagatatcattgcttactagacaatgtggtcatgtgcgaaatttcaatcagcttgtgctgcctgggtgctcgtcaaatttgcgcccagaaagggctgtgaccaatctttgctcaagtccaacactatcaaattggagcaggcctttctgcgcaaataggggtgacaccgttgacgctgttgttccatatatgggtgaatccataagtgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5218" stop="9651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5518" g_stop="5588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5589" i_stop="5693" i_length="105">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5694" g_stop="5766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="144" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5767" i_stop="5865" i_length="99">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5866" g_stop="5940" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="219" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5941" i_stop="6904" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6905" g_stop="6965" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="280" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6966" i_stop="7043" i_length="78">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7044" g_stop="7071" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="308" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7072" i_stop="8247" i_length="1176">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8248" g_stop="8315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="376" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984">
            <donor d_prob="0.918" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9300" g_stop="9351" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="428" r_length="52" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E366210" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5518" e_stop="5588"/>
          <exon e_start="5694" e_stop="5766"/>
          <exon e_start="5866" e_stop="5940"/>
          <exon e_start="6905" e_stop="6965"/>
          <exon e_start="7044" e_stop="7071"/>
          <exon e_start="8248" e_stop="8315"/>
          <exon e_start="9300" e_stop="9351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAGGTCTAAAATCTTCATTATCACTGTTCATTTTCTCATATTACACAAGATCTGTTTACAGTGATTCGTACATTATTTTTTTTTTTTTTTGTTATATTGATTGAACAGTTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCGGTATGAATCGTGATTTAGTTTTATTGCGTTTGTTTTGATATATTAATTGCTGATATTTGTATAATGAGTTGCTGAAATTATTTGATTTTGCTGAACCAGTGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAGGTAATGTCTATTTATGAGCTATCCTCTTTTTTTTCATTTAAGTGATTGGAGTTCTTAATAGGATAGATAAATTGCTATTTTATGGAGGTAAAAAATTCGTTAAATTGATTTTGGAATACCTTTTGGCAAAAATATATAAATGATAAAGAAGAAAAAAGAACATTTCTCCTTTTAGCTCAAGTCAAGTTCACGGTATGTTAGATTTCAGCCATTTTTTGGATAAGCACATTTTTTTTTTGGATAACTGTGGCGTCTGGGTTAGCCTGCACCTCGACTAATTCCACGTGATATCTGTCATCTCCTACAAGCAACTAGTACCAAATAACTCTTATCCACCAAAGATATAATAGCTGCGAAGAATTCACTAGTCTTTTTGTCTATCGAGATTTGAACGTGAGACCTCATGATACTCAATCCACTTCATTGACCACGAAACCATGCCATTGGGTGCAGATGAGCACATTATTTATAGCCACATATTTGAGATACTTGATCATCATCATTTTGTCATTCATACTATTGATGATTGAATTTGACAGAACCGTTTTGATATTGGTACGTGTTACCTGGATAAGGATTATTGTTTTCTCTAGACTCTAGTACGGTAAATTTTTAAATTTATTAAGATTTTGATACAACAGTTTCGAATTTTGCAGTGTTGTACTCTTATTATAAGTATTGTTATGATTGCATGTGGCTATCCTTACTTTCTCATTATGCAATGTATTGGTACTAGCCTTTTTTTTGTGATCGATTCTATCACATTATGCTCTGACTTAGTACTATTCAGATTCCATGACATACTGTCTTATGGCAACCCTTCTAATACTTAACCATTCAGACTCTTATTTTTGTCCTTTGCCTCGTTATATTGAACATGAGCCTTCATGCTATTTGACTTGCTGCTGTTTTTTATTAACCCCATTTAAAAGGTCGTCGTGACATATTTTGAAAATGATAACAGATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTGGTATGTGTAACTAATCCATGATGACTCAGTGTATTTATACTGGTGTGCGATATAATTAGCTCCTACTTCTTAATCCAGGGTGCTCATCAAATTTGCGCCCAGAAAGGTTAGTATATATTATTGCTTAACACCTTTCATATATTATTTGAATCTTAGAGCATGAATAAATGCACAATGTATTTATAGAAGTAGCCATTCTATTTTTCTCTGTCTAGGTCAAACTCGGTAGAATTTTCCATTGCTTTATAGTTATATTATCTGCATTCATAGGGACCTAATCGGTGTTGTTGGATTTGCTTTGTATTTTCATTTGGTTGAATGAGTAACTAAAAGTTGAGACACTCCAATTAAATATTAATTACTTTGTGGATTGCCGGTGTGTGCATGTCCTTAGAGGAGACGGAGATAGTGGACCTCTGTCAGTGAATGTACATGTATCATAATGATAGTGTGTGCATGTCACATAACTTGATTTCAAAAGAGAAGTTTGTTCGATTAGTTAGTTTGTTGTGCACAACATCATATATTTTGAAATTGTCTTGAAGCATTTGGGATGTCCTAAAGTGATACCAATAGTGCCACTTTTTTTCATGTGTATATAACATCTTGTATAAAATATTTGCACTAAGCTAGTACAGTTAGCTTAGTCACAAGTTGTGCAAATCAGCTTTGTGTCTAAAATATCATTTACAACTTGTTCAAAAGCTAGTTTGCACCAAAACGCATCTAAGTTAAGGCACTGTATGCTTCTTCTTTTTGCCTTAAAAATTCTGCTATTTTTTTCTCTGAATGTCACATTTTCCCTTGTAGCCAATTAAAAGGACTCCTAGCAAATAACCGGGTAATGCAATTTGATCGGCTAACGTATAAAACACTTGAAGAAGTCTTGACATGAAGAAGATTATATTGAATTTCCATGCAAATTTAAAAAGGGATAGCAGTCAAAGATTGTTATATATGTTAACAATTTCAGTTGTTCTCTGCTAATCAAGCCTAGAAACTTCATTTTTGGTCCCACCGAAAATCATATATTGTCATAATTTATAATATGAATTTTACCCAATATGAAGTGTGTAGGTGTTGGGAATGTTCAGATACATCAATCTTTTACCTTGTTGTGATGCTTGGATTCATATATCTGACCTAACTTGTTTGGGATCGAGGCATATTTGTTGTTGTATGTTAATTAAAAAAAATACGATACTTGGTGATATGTTCATTCTCTCTCTCTCTCTCTCACACACACACCAGTTGGTTATATTAATTAGTGCATTGCTTGCAGGGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTGGTATATTTTTCTAATAATTTATCAAGCTTGCCTGGAACGCTGATGCAAATGAAATTAGTCACGACATGCTTACACTGTATATAGTATTGTTCAAAAATGTAATCTGGTCTCTTGGTATTGTTCCTGCAGTTCATCATGGTCCCAACTACCATCACATGTATTCTTTAGTACCTTTGAACTTATAAATTATCAGTTAGATACTCCTATGTCAGTTGTACCTTCTCTTCTAAATAATTATTATCTTCACATACTTTATTGAAGTTACCCTTTCTTTTCATCTTTTTTGGGATTGCGGTCTTATATGGAATTATATTATAGATACTTAAAAATGTGACATGTATCTTTTGATTGCCTATTATTGTACCAAATGATTGGCTGTTAGTTCTGGTCATTTGCAAATTTCTGTTTGGACGTGGAAGAAGTATTTGCGTTATCTACCTGGAGGATATAACTAGTTAACTCAATTTTAAAAAAATATAGCTAGTTAGCAGTTTCAACTCCGTATAAAGTTCTGTATCATCTATTGGATCGGGACTGCCATTATCATCAACATCGATGCCATCAAGAAGGGCCTGTCTATCATCTTCACCGCATAGGAACTACTTGATCACTCCAATGTTGCCTTCGCATCCTAGGGTTACATATGTCAATATGACTCTTTTCAATAAGTGGAAATCATTATCTTTAAAAGAATTTATGATAAGATGCTAGTTCAATTAGTTTAATGACCCTATCTTAAAGCTTCGCATCTGGTGGAGTAGAAGAAATTTAGAATTAGTTGGAAATTAGCACTCTTGTTTACAGTTAAAGAATGTTGGAATTCTAAATGTATCATGCAATAATGTATTGACAGCTTCCATATATATTTTAATTGTTATTTCATTTGCTTTCTCCTTTTCTCTGTCATCCCTTTTCCCTTATTCTGTATTGCTACAGTTCCTCACTTTTTTTTCTTTTATTTGCGTGTCTATAATTGTAATGTAGGTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGG</genome_strand>
        <mrna_strand>AAATTCAATCGGCGCCTTCTTGTGCAACCCTACAATCTCATCAAATCCCACTCTTCTTCCATTAATATCAG.........................................................................................................TTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCG...................................................................................................TGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTG..............................................................................GGTGCTCGTCAAATTTGCGCCCAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGACCAATCTTTGCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATAAGTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273187" ref_strand="+" ref_description="SGN-E273187 [cLEM-24-L4]">
      <seq>ttcaatcggcgccttcttctccaaccctacaatctcatcaaatttcactcttcttccattaatatcagttttaagagatcgagagctgcgatgttaggtgttttaaggcgcaaagctatttctagcgcctcttttacttcgtgtgtaaggaaatctctgcataccggttcgacctgcagtatgtaaatctagaattccatctgctgctgcagaagagatatcattgcttactagacaatgtggtcatgtgcgaaatttcaatcagcttgtgctgcctgggtgctcatcaaatttgcgcccagaaagggctgtgaccaatcttttctcaagtccaacactatcaaattggagcaggcctttctgcgcaaatagtggtgataccgttgacgctgttgttccatatatgggtgaatccattagtgatgggacactggccaagttcctgaagaatgttggtgacagagtagaagttgatgagccaattgctcagattgaaacagataaggtaaccattgatgttaccagtcctgaagctggtgtaatccaaaagtttatagccaaggaaggggacactgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5221" stop="10111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5521" g_stop="5588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5589" i_stop="5693" i_length="105">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5694" g_stop="5766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="141" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5767" i_stop="5865" i_length="99">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5866" g_stop="5940" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="217" r_length="76" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5941" i_stop="6904" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6905" g_stop="6965" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="278" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6966" i_stop="7043" i_length="78">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7044" g_stop="7071" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="306" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7072" i_stop="8247" i_length="1176">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8248" g_stop="8315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="374" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9300" g_stop="9374" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="449" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9375" i_stop="9475" i_length="101">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9476" g_stop="9531" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="505" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9532" i_stop="9627" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9628" g_stop="9672" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="550" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="9673" i_stop="9783" i_length="111">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="9784" g_stop="9811" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="578" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E273187" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5521" e_stop="5588"/>
          <exon e_start="5694" e_stop="5766"/>
          <exon e_start="5866" e_stop="5940"/>
          <exon e_start="6905" e_stop="6965"/>
          <exon e_start="7044" e_stop="7071"/>
          <exon e_start="8248" e_stop="8315"/>
          <exon e_start="9300" e_stop="9374"/>
          <exon e_start="9476" e_stop="9531"/>
          <exon e_start="9628" e_stop="9672"/>
          <exon e_start="9784" e_stop="9811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAGGTCTAAAATCTTCATTATCACTGTTCATTTTCTCATATTACACAAGATCTGTTTACAGTGATTCGTACATTATTTTTTTTTTTTTTTGTTATATTGATTGAACAGTTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCGGTATGAATCGTGATTTAGTTTTATTGCGTTTGTTTTGATATATTAATTGCTGATATTTGTATAATGAGTTGCTGAAATTATTTGATTTTGCTGAACCAGTGTGTAAGGAAATCTCTGCATA-CGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAGGTAATGTCTATTTATGAGCTATCCTCTTTTTTTTCATTTAAGTGATTGGAGTTCTTAATAGGATAGATAAATTGCTATTTTATGGAGGTAAAAAATTCGTTAAATTGATTTTGGAATACCTTTTGGCAAAAATATATAAATGATAAAGAAGAAAAAAGAACATTTCTCCTTTTAGCTCAAGTCAAGTTCACGGTATGTTAGATTTCAGCCATTTTTTGGATAAGCACATTTTTTTTTTGGATAACTGTGGCGTCTGGGTTAGCCTGCACCTCGACTAATTCCACGTGATATCTGTCATCTCCTACAAGCAACTAGTACCAAATAACTCTTATCCACCAAAGATATAATAGCTGCGAAGAATTCACTAGTCTTTTTGTCTATCGAGATTTGAACGTGAGACCTCATGATACTCAATCCACTTCATTGACCACGAAACCATGCCATTGGGTGCAGATGAGCACATTATTTATAGCCACATATTTGAGATACTTGATCATCATCATTTTGTCATTCATACTATTGATGATTGAATTTGACAGAACCGTTTTGATATTGGTACGTGTTACCTGGATAAGGATTATTGTTTTCTCTAGACTCTAGTACGGTAAATTTTTAAATTTATTAAGATTTTGATACAACAGTTTCGAATTTTGCAGTGTTGTACTCTTATTATAAGTATTGTTATGATTGCATGTGGCTATCCTTACTTTCTCATTATGCAATGTATTGGTACTAGCCTTTTTTTTGTGATCGATTCTATCACATTATGCTCTGACTTAGTACTATTCAGATTCCATGACATACTGTCTTATGGCAACCCTTCTAATACTTAACCATTCAGACTCTTATTTTTGTCCTTTGCCTCGTTATATTGAACATGAGCCTTCATGCTATTTGACTTGCTGCTGTTTTTTATTAACCCCATTTAAAAGGTCGTCGTGACATATTTTGAAAATGATAACAGATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTGGTATGTGTAACTAATCCATGATGACTCAGTGTATTTATACTGGTGTGCGATATAATTAGCTCCTACTTCTTAATCCAGGGTGCTCATCAAATTTGCGCCCAGAAAGGTTAGTATATATTATTGCTTAACACCTTTCATATATTATTTGAATCTTAGAGCATGAATAAATGCACAATGTATTTATAGAAGTAGCCATTCTATTTTTCTCTGTCTAGGTCAAACTCGGTAGAATTTTCCATTGCTTTATAGTTATATTATCTGCATTCATAGGGACCTAATCGGTGTTGTTGGATTTGCTTTGTATTTTCATTTGGTTGAATGAGTAACTAAAAGTTGAGACACTCCAATTAAATATTAATTACTTTGTGGATTGCCGGTGTGTGCATGTCCTTAGAGGAGACGGAGATAGTGGACCTCTGTCAGTGAATGTACATGTATCATAATGATAGTGTGTGCATGTCACATAACTTGATTTCAAAAGAGAAGTTTGTTCGATTAGTTAGTTTGTTGTGCACAACATCATATATTTTGAAATTGTCTTGAAGCATTTGGGATGTCCTAAAGTGATACCAATAGTGCCACTTTTTTTCATGTGTATATAACATCTTGTATAAAATATTTGCACTAAGCTAGTACAGTTAGCTTAGTCACAAGTTGTGCAAATCAGCTTTGTGTCTAAAATATCATTTACAACTTGTTCAAAAGCTAGTTTGCACCAAAACGCATCTAAGTTAAGGCACTGTATGCTTCTTCTTTTTGCCTTAAAAATTCTGCTATTTTTTTCTCTGAATGTCACATTTTCCCTTGTAGCCAATTAAAAGGACTCCTAGCAAATAACCGGGTAATGCAATTTGATCGGCTAACGTATAAAACACTTGAAGAAGTCTTGACATGAAGAAGATTATATTGAATTTCCATGCAAATTTAAAAAGGGATAGCAGTCAAAGATTGTTATATATGTTAACAATTTCAGTTGTTCTCTGCTAATCAAGCCTAGAAACTTCATTTTTGGTCCCACCGAAAATCATATATTGTCATAATTTATAATATGAATTTTACCCAATATGAAGTGTGTAGGTGTTGGGAATGTTCAGATACATCAATCTTTTACCTTGTTGTGATGCTTGGATTCATATATCTGACCTAACTTGTTTGGGATCGAGGCATATTTGTTGTTGTATGTTAATTAAAAAAAATACGATACTTGGTGATATGTTCATTCTCTCTCTCTCTCTCTCACACACACACCAGTTGGTTATATTAATTAGTGCATTGCTTGCAGGGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTGGTATATTTTTCTAATAATTTATCAAGCTTGCCTGGAACGCTGATGCAAATGAAATTAGTCACGACATGCTTACACTGTATATAGTATTGTTCAAAAATGTAATCTGGTCTCTTGGTATTGTTCCTGCAGTTCATCATGGTCCCAACTACCATCACATGTATTCTTTAGTACCTTTGAACTTATAAATTATCAGTTAGATACTCCTATGTCAGTTGTACCTTCTCTTCTAAATAATTATTATCTTCACATACTTTATTGAAGTTACCCTTTCTTTTCATCTTTTTTGGGATTGCGGTCTTATATGGAATTATATTATAGATACTTAAAAATGTGACATGTATCTTTTGATTGCCTATTATTGTACCAAATGATTGGCTGTTAGTTCTGGTCATTTGCAAATTTCTGTTTGGACGTGGAAGAAGTATTTGCGTTATCTACCTGGAGGATATAACTAGTTAACTCAATTTTAAAAAAATATAGCTAGTTAGCAGTTTCAACTCCGTATAAAGTTCTGTATCATCTATTGGATCGGGACTGCCATTATCATCAACATCGATGCCATCAAGAAGGGCCTGTCTATCATCTTCACCGCATAGGAACTACTTGATCACTCCAATGTTGCCTTCGCATCCTAGGGTTACATATGTCAATATGACTCTTTTCAATAAGTGGAAATCATTATCTTTAAAAGAATTTATGATAAGATGCTAGTTCAATTAGTTTAATGACCCTATCTTAAAGCTTCGCATCTGGTGGAGTAGAAGAAATTTAGAATTAGTTGGAAATTAGCACTCTTGTTTACAGTTAAAGAATGTTGGAATTCTAAATGTATCATGCAATAATGTATTGACAGCTTCCATATATATTTTAATTGTTATTTCATTTGCTTTCTCCTTTTCTCTGTCATCCCTTTTCCCTTATTCTGTATTGCTACAGTTCCTCACTTTTTTTTCTTTTATTTGCGTGTCTATAATTGTAATGTAGGTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGAGTATGTCTTTATTGATGTGGTCTCTGATCCATCTTATATGCAGTAGTATTCATAGTCACTCTGTACTTACTGTTTTTTCATGTTTCCTTCTATATGAGCAGATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAGGTACCCTGTTTCTAATATTAGTTAATTTTAATCACATTATCTCAGGTCTGTCTGGAGATTAATGACACTTATATATGAATGGTTTTTATTGGACAGGTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAGGTAGAACATCTTTGGCACTGGAGCTCTGCGTTGCTCAACCTCCCACCACCTAGTTTATTACATTTTATTTTTTGATCAACAACTTCTGAATCTGGTTTTGAATATCTATAGTTTATAGCCAAGGAAGGGGACACTGTCG</genome_strand>
        <mrna_strand>TTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAG.........................................................................................................TTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCG...................................................................................................TGTGTAAGGAAATCTCTGCATACCGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTG..............................................................................GGTGCTCATCAAATTTGCGCCCAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGA.....................................................................................................ATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAG................................................................................................GTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAG...............................................................................................................TTTATAGCCAAGGAAGGGGACACTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200383" ref_strand="+" ref_description="SGN-E200383 [cLEC-1-E9]">
      <seq>ttcaatcggcgccttcttctccaaccctacaatctcatcaaatttcactcttcttccattaatatcagttttaagagatcgagagctgcgatgttaggtgttttaaggcgcaaagctatttctagcgcctcttttacttcgtgtgtaaggaaatctctgcatacggttcgacctgcagtatgtaaatctagaattccatctgctgctgcagaagagatatcattgcttactagacaatgtggtcatgtgcgaaatttcaatcagcttgtgctgcctgggtgctcatcaaatttgcgcccagaaagggctgtgaccaatcttttctcaagtccaacactatcaaattggagcaggcctttctgcgcaaatagtggtgataccgttgacgctgttgttccatatatgggtgaatccattagtgatgggacactggccaagttcctgaagaatgttggtgacagagtagaagttgatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5221" stop="9804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5521" g_stop="5588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5589" i_stop="5693" i_length="105">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5694" g_stop="5766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="141" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5767" i_stop="5865" i_length="99">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5866" g_stop="5940" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="216" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5941" i_stop="6904" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6905" g_stop="6965" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="277" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6966" i_stop="7043" i_length="78">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7044" g_stop="7071" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="305" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7072" i_stop="8247" i_length="1176">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8248" g_stop="8315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="373" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9300" g_stop="9374" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="448" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9375" i_stop="9475" i_length="101">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9476" g_stop="9504" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="477" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E200383" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5521" e_stop="5588"/>
          <exon e_start="5694" e_stop="5766"/>
          <exon e_start="5866" e_stop="5940"/>
          <exon e_start="6905" e_stop="6965"/>
          <exon e_start="7044" e_stop="7071"/>
          <exon e_start="8248" e_stop="8315"/>
          <exon e_start="9300" e_stop="9374"/>
          <exon e_start="9476" e_stop="9504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAGGTCTAAAATCTTCATTATCACTGTTCATTTTCTCATATTACACAAGATCTGTTTACAGTGATTCGTACATTATTTTTTTTTTTTTTTGTTATATTGATTGAACAGTTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCGGTATGAATCGTGATTTAGTTTTATTGCGTTTGTTTTGATATATTAATTGCTGATATTTGTATAATGAGTTGCTGAAATTATTTGATTTTGCTGAACCAGTGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAGGTAATGTCTATTTATGAGCTATCCTCTTTTTTTTCATTTAAGTGATTGGAGTTCTTAATAGGATAGATAAATTGCTATTTTATGGAGGTAAAAAATTCGTTAAATTGATTTTGGAATACCTTTTGGCAAAAATATATAAATGATAAAGAAGAAAAAAGAACATTTCTCCTTTTAGCTCAAGTCAAGTTCACGGTATGTTAGATTTCAGCCATTTTTTGGATAAGCACATTTTTTTTTTGGATAACTGTGGCGTCTGGGTTAGCCTGCACCTCGACTAATTCCACGTGATATCTGTCATCTCCTACAAGCAACTAGTACCAAATAACTCTTATCCACCAAAGATATAATAGCTGCGAAGAATTCACTAGTCTTTTTGTCTATCGAGATTTGAACGTGAGACCTCATGATACTCAATCCACTTCATTGACCACGAAACCATGCCATTGGGTGCAGATGAGCACATTATTTATAGCCACATATTTGAGATACTTGATCATCATCATTTTGTCATTCATACTATTGATGATTGAATTTGACAGAACCGTTTTGATATTGGTACGTGTTACCTGGATAAGGATTATTGTTTTCTCTAGACTCTAGTACGGTAAATTTTTAAATTTATTAAGATTTTGATACAACAGTTTCGAATTTTGCAGTGTTGTACTCTTATTATAAGTATTGTTATGATTGCATGTGGCTATCCTTACTTTCTCATTATGCAATGTATTGGTACTAGCCTTTTTTTTGTGATCGATTCTATCACATTATGCTCTGACTTAGTACTATTCAGATTCCATGACATACTGTCTTATGGCAACCCTTCTAATACTTAACCATTCAGACTCTTATTTTTGTCCTTTGCCTCGTTATATTGAACATGAGCCTTCATGCTATTTGACTTGCTGCTGTTTTTTATTAACCCCATTTAAAAGGTCGTCGTGACATATTTTGAAAATGATAACAGATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTGGTATGTGTAACTAATCCATGATGACTCAGTGTATTTATACTGGTGTGCGATATAATTAGCTCCTACTTCTTAATCCAGGGTGCTCATCAAATTTGCGCCCAGAAAGGTTAGTATATATTATTGCTTAACACCTTTCATATATTATTTGAATCTTAGAGCATGAATAAATGCACAATGTATTTATAGAAGTAGCCATTCTATTTTTCTCTGTCTAGGTCAAACTCGGTAGAATTTTCCATTGCTTTATAGTTATATTATCTGCATTCATAGGGACCTAATCGGTGTTGTTGGATTTGCTTTGTATTTTCATTTGGTTGAATGAGTAACTAAAAGTTGAGACACTCCAATTAAATATTAATTACTTTGTGGATTGCCGGTGTGTGCATGTCCTTAGAGGAGACGGAGATAGTGGACCTCTGTCAGTGAATGTACATGTATCATAATGATAGTGTGTGCATGTCACATAACTTGATTTCAAAAGAGAAGTTTGTTCGATTAGTTAGTTTGTTGTGCACAACATCATATATTTTGAAATTGTCTTGAAGCATTTGGGATGTCCTAAAGTGATACCAATAGTGCCACTTTTTTTCATGTGTATATAACATCTTGTATAAAATATTTGCACTAAGCTAGTACAGTTAGCTTAGTCACAAGTTGTGCAAATCAGCTTTGTGTCTAAAATATCATTTACAACTTGTTCAAAAGCTAGTTTGCACCAAAACGCATCTAAGTTAAGGCACTGTATGCTTCTTCTTTTTGCCTTAAAAATTCTGCTATTTTTTTCTCTGAATGTCACATTTTCCCTTGTAGCCAATTAAAAGGACTCCTAGCAAATAACCGGGTAATGCAATTTGATCGGCTAACGTATAAAACACTTGAAGAAGTCTTGACATGAAGAAGATTATATTGAATTTCCATGCAAATTTAAAAAGGGATAGCAGTCAAAGATTGTTATATATGTTAACAATTTCAGTTGTTCTCTGCTAATCAAGCCTAGAAACTTCATTTTTGGTCCCACCGAAAATCATATATTGTCATAATTTATAATATGAATTTTACCCAATATGAAGTGTGTAGGTGTTGGGAATGTTCAGATACATCAATCTTTTACCTTGTTGTGATGCTTGGATTCATATATCTGACCTAACTTGTTTGGGATCGAGGCATATTTGTTGTTGTATGTTAATTAAAAAAAATACGATACTTGGTGATATGTTCATTCTCTCTCTCTCTCTCTCACACACACACCAGTTGGTTATATTAATTAGTGCATTGCTTGCAGGGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTGGTATATTTTTCTAATAATTTATCAAGCTTGCCTGGAACGCTGATGCAAATGAAATTAGTCACGACATGCTTACACTGTATATAGTATTGTTCAAAAATGTAATCTGGTCTCTTGGTATTGTTCCTGCAGTTCATCATGGTCCCAACTACCATCACATGTATTCTTTAGTACCTTTGAACTTATAAATTATCAGTTAGATACTCCTATGTCAGTTGTACCTTCTCTTCTAAATAATTATTATCTTCACATACTTTATTGAAGTTACCCTTTCTTTTCATCTTTTTTGGGATTGCGGTCTTATATGGAATTATATTATAGATACTTAAAAATGTGACATGTATCTTTTGATTGCCTATTATTGTACCAAATGATTGGCTGTTAGTTCTGGTCATTTGCAAATTTCTGTTTGGACGTGGAAGAAGTATTTGCGTTATCTACCTGGAGGATATAACTAGTTAACTCAATTTTAAAAAAATATAGCTAGTTAGCAGTTTCAACTCCGTATAAAGTTCTGTATCATCTATTGGATCGGGACTGCCATTATCATCAACATCGATGCCATCAAGAAGGGCCTGTCTATCATCTTCACCGCATAGGAACTACTTGATCACTCCAATGTTGCCTTCGCATCCTAGGGTTACATATGTCAATATGACTCTTTTCAATAAGTGGAAATCATTATCTTTAAAAGAATTTATGATAAGATGCTAGTTCAATTAGTTTAATGACCCTATCTTAAAGCTTCGCATCTGGTGGAGTAGAAGAAATTTAGAATTAGTTGGAAATTAGCACTCTTGTTTACAGTTAAAGAATGTTGGAATTCTAAATGTATCATGCAATAATGTATTGACAGCTTCCATATATATTTTAATTGTTATTTCATTTGCTTTCTCCTTTTCTCTGTCATCCCTTTTCCCTTATTCTGTATTGCTACAGTTCCTCACTTTTTTTTCTTTTATTTGCGTGTCTATAATTGTAATGTAGGTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGAGTATGTCTTTATTGATGTGGTCTCTGATCCATCTTATATGCAGTAGTATTCATAGTCACTCTGTACTTACTGTTTTTTCATGTTTCCTTCTATATGAGCAGATGTTGGTGACAGAGTAGAAGTTGATGAG</genome_strand>
        <mrna_strand>TTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAG.........................................................................................................TTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCG...................................................................................................TGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTG..............................................................................GGTGCTCATCAAATTTGCGCCCAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGA.....................................................................................................ATGTTGGTGACAGAGTAGAAGTTGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263560" ref_strand="+" ref_description="SGN-E263560 [cLEG-60-B11]">
      <seq>tcaatcggcgccttcttctccaaccctacaatctcatcaaatttcactcttcttccattaatatcagttttaagagatcgagagctgcgatgttaggtgttttaaggcgcaaagctatttctagcgcctcttttacttcgtgtgtaaggaaatctctgcatacggttcgacctgcagtatgtaaatctagaattccatctgctgctgcagaagagatatcattgcttactagacaatgtggtcatgtgcgaaatttcaatcagcttgtgctgcctgggtgctcatcaaatttgcgcccagaaagggctgtgaccaatcttttctcaagtccaacactatcaaattggagcaggcctttctgcgcaaatagtggtgataccgttgacgctgttgttccatatatgggtgaatccattagtgatgggacactggccaagttcctgaagaatgttggtgacagagtagaagttgatgagccaattgctcagattgaaacagataaggtaaccattgatgttaccagtcctgaagctggtgtaatccaaaagtttatagccaaggaaggggacactgtcgaaccaggcaataaagttgctatcatttcaaaatctggtgagggtgtggaacatgttgctccatctgagaagtcctctgagaaagtagctcctgcagctgaggataagaaagaggaaaaggcaaaccctcagttgagacaactcccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5222" stop="10259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5522" g_stop="5588" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5589" i_stop="5693" i_length="105">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5694" g_stop="5766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="140" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5767" i_stop="5865" i_length="99">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5866" g_stop="5940" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="215" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5941" i_stop="6904" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6905" g_stop="6965" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="276" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6966" i_stop="7043" i_length="78">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7044" g_stop="7071" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="304" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7072" i_stop="8247" i_length="1176">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8248" g_stop="8315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="372" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9300" g_stop="9374" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="447" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9375" i_stop="9475" i_length="101">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9476" g_stop="9531" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="503" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9532" i_stop="9627" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9628" g_stop="9672" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="548" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="9673" i_stop="9783" i_length="111">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="9784" g_stop="9959" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="723" r_length="175" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E263560" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5522" e_stop="5588"/>
          <exon e_start="5694" e_stop="5766"/>
          <exon e_start="5866" e_stop="5940"/>
          <exon e_start="6905" e_stop="6965"/>
          <exon e_start="7044" e_stop="7071"/>
          <exon e_start="8248" e_stop="8315"/>
          <exon e_start="9300" e_stop="9374"/>
          <exon e_start="9476" e_stop="9531"/>
          <exon e_start="9628" e_stop="9672"/>
          <exon e_start="9784" e_stop="9959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAGGTCTAAAATCTTCATTATCACTGTTCATTTTCTCATATTACACAAGATCTGTTTACAGTGATTCGTACATTATTTTTTTTTTTTTTTGTTATATTGATTGAACAGTTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCGGTATGAATCGTGATTTAGTTTTATTGCGTTTGTTTTGATATATTAATTGCTGATATTTGTATAATGAGTTGCTGAAATTATTTGATTTTGCTGAACCAGTGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAGGTAATGTCTATTTATGAGCTATCCTCTTTTTTTTCATTTAAGTGATTGGAGTTCTTAATAGGATAGATAAATTGCTATTTTATGGAGGTAAAAAATTCGTTAAATTGATTTTGGAATACCTTTTGGCAAAAATATATAAATGATAAAGAAGAAAAAAGAACATTTCTCCTTTTAGCTCAAGTCAAGTTCACGGTATGTTAGATTTCAGCCATTTTTTGGATAAGCACATTTTTTTTTTGGATAACTGTGGCGTCTGGGTTAGCCTGCACCTCGACTAATTCCACGTGATATCTGTCATCTCCTACAAGCAACTAGTACCAAATAACTCTTATCCACCAAAGATATAATAGCTGCGAAGAATTCACTAGTCTTTTTGTCTATCGAGATTTGAACGTGAGACCTCATGATACTCAATCCACTTCATTGACCACGAAACCATGCCATTGGGTGCAGATGAGCACATTATTTATAGCCACATATTTGAGATACTTGATCATCATCATTTTGTCATTCATACTATTGATGATTGAATTTGACAGAACCGTTTTGATATTGGTACGTGTTACCTGGATAAGGATTATTGTTTTCTCTAGACTCTAGTACGGTAAATTTTTAAATTTATTAAGATTTTGATACAACAGTTTCGAATTTTGCAGTGTTGTACTCTTATTATAAGTATTGTTATGATTGCATGTGGCTATCCTTACTTTCTCATTATGCAATGTATTGGTACTAGCCTTTTTTTTGTGATCGATTCTATCACATTATGCTCTGACTTAGTACTATTCAGATTCCATGACATACTGTCTTATGGCAACCCTTCTAATACTTAACCATTCAGACTCTTATTTTTGTCCTTTGCCTCGTTATATTGAACATGAGCCTTCATGCTATTTGACTTGCTGCTGTTTTTTATTAACCCCATTTAAAAGGTCGTCGTGACATATTTTGAAAATGATAACAGATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTGGTATGTGTAACTAATCCATGATGACTCAGTGTATTTATACTGGTGTGCGATATAATTAGCTCCTACTTCTTAATCCAGGGTGCTCATCAAATTTGCGCCCAGAAAGGTTAGTATATATTATTGCTTAACACCTTTCATATATTATTTGAATCTTAGAGCATGAATAAATGCACAATGTATTTATAGAAGTAGCCATTCTATTTTTCTCTGTCTAGGTCAAACTCGGTAGAATTTTCCATTGCTTTATAGTTATATTATCTGCATTCATAGGGACCTAATCGGTGTTGTTGGATTTGCTTTGTATTTTCATTTGGTTGAATGAGTAACTAAAAGTTGAGACACTCCAATTAAATATTAATTACTTTGTGGATTGCCGGTGTGTGCATGTCCTTAGAGGAGACGGAGATAGTGGACCTCTGTCAGTGAATGTACATGTATCATAATGATAGTGTGTGCATGTCACATAACTTGATTTCAAAAGAGAAGTTTGTTCGATTAGTTAGTTTGTTGTGCACAACATCATATATTTTGAAATTGTCTTGAAGCATTTGGGATGTCCTAAAGTGATACCAATAGTGCCACTTTTTTTCATGTGTATATAACATCTTGTATAAAATATTTGCACTAAGCTAGTACAGTTAGCTTAGTCACAAGTTGTGCAAATCAGCTTTGTGTCTAAAATATCATTTACAACTTGTTCAAAAGCTAGTTTGCACCAAAACGCATCTAAGTTAAGGCACTGTATGCTTCTTCTTTTTGCCTTAAAAATTCTGCTATTTTTTTCTCTGAATGTCACATTTTCCCTTGTAGCCAATTAAAAGGACTCCTAGCAAATAACCGGGTAATGCAATTTGATCGGCTAACGTATAAAACACTTGAAGAAGTCTTGACATGAAGAAGATTATATTGAATTTCCATGCAAATTTAAAAAGGGATAGCAGTCAAAGATTGTTATATATGTTAACAATTTCAGTTGTTCTCTGCTAATCAAGCCTAGAAACTTCATTTTTGGTCCCACCGAAAATCATATATTGTCATAATTTATAATATGAATTTTACCCAATATGAAGTGTGTAGGTGTTGGGAATGTTCAGATACATCAATCTTTTACCTTGTTGTGATGCTTGGATTCATATATCTGACCTAACTTGTTTGGGATCGAGGCATATTTGTTGTTGTATGTTAATTAAAAAAAATACGATACTTGGTGATATGTTCATTCTCTCTCTCTCTCTCTCACACACACACCAGTTGGTTATATTAATTAGTGCATTGCTTGCAGGGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTGGTATATTTTTCTAATAATTTATCAAGCTTGCCTGGAACGCTGATGCAAATGAAATTAGTCACGACATGCTTACACTGTATATAGTATTGTTCAAAAATGTAATCTGGTCTCTTGGTATTGTTCCTGCAGTTCATCATGGTCCCAACTACCATCACATGTATTCTTTAGTACCTTTGAACTTATAAATTATCAGTTAGATACTCCTATGTCAGTTGTACCTTCTCTTCTAAATAATTATTATCTTCACATACTTTATTGAAGTTACCCTTTCTTTTCATCTTTTTTGGGATTGCGGTCTTATATGGAATTATATTATAGATACTTAAAAATGTGACATGTATCTTTTGATTGCCTATTATTGTACCAAATGATTGGCTGTTAGTTCTGGTCATTTGCAAATTTCTGTTTGGACGTGGAAGAAGTATTTGCGTTATCTACCTGGAGGATATAACTAGTTAACTCAATTTTAAAAAAATATAGCTAGTTAGCAGTTTCAACTCCGTATAAAGTTCTGTATCATCTATTGGATCGGGACTGCCATTATCATCAACATCGATGCCATCAAGAAGGGCCTGTCTATCATCTTCACCGCATAGGAACTACTTGATCACTCCAATGTTGCCTTCGCATCCTAGGGTTACATATGTCAATATGACTCTTTTCAATAAGTGGAAATCATTATCTTTAAAAGAATTTATGATAAGATGCTAGTTCAATTAGTTTAATGACCCTATCTTAAAGCTTCGCATCTGGTGGAGTAGAAGAAATTTAGAATTAGTTGGAAATTAGCACTCTTGTTTACAGTTAAAGAATGTTGGAATTCTAAATGTATCATGCAATAATGTATTGACAGCTTCCATATATATTTTAATTGTTATTTCATTTGCTTTCTCCTTTTCTCTGTCATCCCTTTTCCCTTATTCTGTATTGCTACAGTTCCTCACTTTTTTTTCTTTTATTTGCGTGTCTATAATTGTAATGTAGGTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGAGTATGTCTTTATTGATGTGGTCTCTGATCCATCTTATATGCAGTAGTATTCATAGTCACTCTGTACTTACTGTTTTTTCATGTTTCCTTCTATATGAGCAGATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAGGTACCCTGTTTCTAATATTAGTTAATTTTAATCACATTATCTCAGGTCTGTCTGGAGATTAATGACACTTATATATGAATGGTTTTTATTGGACAGGTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAGGTAGAACATCTTTGGCACTGGAGCTCTGCGTTGCTCAACCTCCCACCACCTAGTTTATTACATTTTATTTTTTGATCAACAACTTCTGAATCTGGTTTTGAATATCTATAGTTTATAGCCAAGGAAGGGGACACTGTCGAACCAGGCAATAAAGTTGCTATCATTTCAAAATCTGGTGAGGGTGTGGAACATGTTGCTCCATCTGAGAAGTCCTCTGAGAAAGTAGCTCCTGCAGCTGAGGATAAGAAAGAGGAAAAGGCAAAACCTCAAGTTGAGACAACTCCCGT</genome_strand>
        <mrna_strand>TCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAG.........................................................................................................TTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCG...................................................................................................TGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTG..............................................................................GGTGCTCATCAAATTTGCGCCCAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGA.....................................................................................................ATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAG................................................................................................GTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAG...............................................................................................................TTTATAGCCAAGGAAGGGGACACTGTCGAACCAGGCAATAAAGTTGCTATCATTTCAAAATCTGGTGAGGGTGTGGAACATGTTGCTCCATCTGAGAAGTCCTCTGAGAAAGTAGCTCCTGCAGCTGAGGATAAGAAAGAGGAAAAGGCAAACCCTC-AGTTGAGACAACTCCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697756" ref_strand="+" ref_description="SGN-E697756 [FA04AC03]">
      <seq>ccttttggcgccttcttctcaaccctacaatctcatcaaattcctttcttcttccattaatatcagttttcacagatcgagagctgcgatgttacgtgttttaaggcgcaaagctatttctagcgcctcttttacttcgtgtgtaaggaaatctctgcatacggttcgacctgcagtatgtaaatctagaattccatctgctgctgcacaagagatatcattgcttactagacaatgtggtcatgtgcgaaatttcaatcaccttgtgctgcctgggtgctcctcaaatttgcgcccagaaagggctgtgaccaatcttttctcaagtccaacactatcaaattggagcatgcctttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5226" stop="8604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5522" g_stop="5588" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.881"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5589" i_stop="5693" i_length="105">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5694" g_stop="5766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="139" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5767" i_stop="5865" i_length="99">
            <donor d_prob="0.870" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5866" g_stop="5940" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="214" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5941" i_stop="6904" i_length="964">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.561" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6905" g_stop="6965" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="275" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6966" i_stop="7043" i_length="78">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.473" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7044" g_stop="7071" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="303" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7072" i_stop="8247" i_length="1176">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8248" g_stop="8304" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="360" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E697756" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5522" e_stop="5588"/>
          <exon e_start="5694" e_stop="5766"/>
          <exon e_start="5866" e_stop="5940"/>
          <exon e_start="6905" e_stop="6965"/>
          <exon e_start="7044" e_stop="7071"/>
          <exon e_start="8248" e_stop="8304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAGGTCTAAAATCTTCATTATCACTGTTCATTTTCTCATATTACACAAGATCTGTTTACAGTGATTCGTACATTATTTTTTTTTTTTTTTGTTATATTGATTGAACAGTTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCGGTATGAATCGTGATTTAGTTTTATTGCGTTTGTTTTGATATATTAATTGCTGATATTTGTATAATGAGTTGCTGAAATTATTTGATTTTGCTGAACCAGTGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAGGTAATGTCTATTTATGAGCTATCCTCTTTTTTTTCATTTAAGTGATTGGAGTTCTTAATAGGATAGATAAATTGCTATTTTATGGAGGTAAAAAATTCGTTAAATTGATTTTGGAATACCTTTTGGCAAAAATATATAAATGATAAAGAAGAAAAAAGAACATTTCTCCTTTTAGCTCAAGTCAAGTTCACGGTATGTTAGATTTCAGCCATTTTTTGGATAAGCACATTTTTTTTTTGGATAACTGTGGCGTCTGGGTTAGCCTGCACCTCGACTAATTCCACGTGATATCTGTCATCTCCTACAAGCAACTAGTACCAAATAACTCTTATCCACCAAAGATATAATAGCTGCGAAGAATTCACTAGTCTTTTTGTCTATCGAGATTTGAACGTGAGACCTCATGATACTCAATCCACTTCATTGACCACGAAACCATGCCATTGGGTGCAGATGAGCACATTATTTATAGCCACATATTTGAGATACTTGATCATCATCATTTTGTCATTCATACTATTGATGATTGAATTTGACAGAACCGTTTTGATATTGGTACGTGTTACCTGGATAAGGATTATTGTTTTCTCTAGACTCTAGTACGGTAAATTTTTAAATTTATTAAGATTTTGATACAACAGTTTCGAATTTTGCAGTGTTGTACTCTTATTATAAGTATTGTTATGATTGCATGTGGCTATCCTTACTTTCTCATTATGCAATGTATTGGTACTAGCCTTTTTTTTGTGATCGATTCTATCACATTATGCTCTGACTTAGTACTATTCAGATTCCATGACATACTGTCTTATGGCAACCCTTCTAATACTTAACCATTCAGACTCTTATTTTTGTCCTTTGCCTCGTTATATTGAACATGAGCCTTCATGCTATTTGACTTGCTGCTGTTTTTTATTAACCCCATTTAAAAGGTCGTCGTGACATATTTTGAAAATGATAACAGATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTGGTATGTGTAACTAATCCATGATGACTCAGTGTATTTATACTGGTGTGCGATATAATTAGCTCCTACTTCTTAATCCAGGGTGCTCATCAAATTTGCGCCCAGAAAGGTTAGTATATATTATTGCTTAACACCTTTCATATATTATTTGAATCTTAGAGCATGAATAAATGCACAATGTATTTATAGAAGTAGCCATTCTATTTTTCTCTGTCTAGGTCAAACTCGGTAGAATTTTCCATTGCTTTATAGTTATATTATCTGCATTCATAGGGACCTAATCGGTGTTGTTGGATTTGCTTTGTATTTTCATTTGGTTGAATGAGTAACTAAAAGTTGAGACACTCCAATTAAATATTAATTACTTTGTGGATTGCCGGTGTGTGCATGTCCTTAGAGGAGACGGAGATAGTGGACCTCTGTCAGTGAATGTACATGTATCATAATGATAGTGTGTGCATGTCACATAACTTGATTTCAAAAGAGAAGTTTGTTCGATTAGTTAGTTTGTTGTGCACAACATCATATATTTTGAAATTGTCTTGAAGCATTTGGGATGTCCTAAAGTGATACCAATAGTGCCACTTTTTTTCATGTGTATATAACATCTTGTATAAAATATTTGCACTAAGCTAGTACAGTTAGCTTAGTCACAAGTTGTGCAAATCAGCTTTGTGTCTAAAATATCATTTACAACTTGTTCAAAAGCTAGTTTGCACCAAAACGCATCTAAGTTAAGGCACTGTATGCTTCTTCTTTTTGCCTTAAAAATTCTGCTATTTTTTTCTCTGAATGTCACATTTTCCCTTGTAGCCAATTAAAAGGACTCCTAGCAAATAACCGGGTAATGCAATTTGATCGGCTAACGTATAAAACACTTGAAGAAGTCTTGACATGAAGAAGATTATATTGAATTTCCATGCAAATTTAAAAAGGGATAGCAGTCAAAGATTGTTATATATGTTAACAATTTCAGTTGTTCTCTGCTAATCAAGCCTAGAAACTTCATTTTTGGTCCCACCGAAAATCATATATTGTCATAATTTATAATATGAATTTTACCCAATATGAAGTGTGTAGGTGTTGGGAATGTTCAGATACATCAATCTTTTACCTTGTTGTGATGCTTGGATTCATATATCTGACCTAACTTGTTTGGGATCGAGGCATATTTGTTGTTGTATGTTAATTAAAAAAAATACGATACTTGGTGATATGTTCATTCTCTCTCTCTCTCTCTCACACACACACCAGTTGGTTATATTAATTAGTGCATTGCTTGCAGGGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTG</genome_strand>
        <mrna_strand>CCTTTTGGCGCCTTCTTCT-CAACCCTACAATCTCATCAAATTCCTTTCTTCTTCCATTAATATCAG.........................................................................................................TTTTCACAGATCGAGAGCTGCGATGTTACGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCG...................................................................................................TGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCACAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCACCTTGTGCTGCCTG..............................................................................GGTGCTCCTCAAATTTGCGCCCAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCATGCCTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201386" ref_strand="+" ref_description="SGN-E201386 [cLEC-4-F19]">
      <seq>atcggcgccttcttctccaaccctacaatctcatcaaatttcactcttcttccattaatatcagttttaagagatcgagagctgcgatgttaggtgttttaaggcgcaaagctatttctagcgcctcttttacttcgtgtgtaaggaaatctctgcatacggttcgacctgcagtatgtaaatctagaattccatctgctgctgcagaagagatatcattgcttactagacaatgtggtcatgtgcgaaatttcaatcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5225" stop="7254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5525" g_stop="5588" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5589" i_stop="5693" i_length="105">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5694" g_stop="5766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="137" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5767" i_stop="5865" i_length="99">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5866" g_stop="5940" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="212" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5941" i_stop="6904" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6905" g_stop="6954" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="262" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E201386" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>262</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5525" e_stop="5588"/>
          <exon e_start="5694" e_stop="5766"/>
          <exon e_start="5866" e_stop="5940"/>
          <exon e_start="6905" e_stop="6954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAGGTCTAAAATCTTCATTATCACTGTTCATTTTCTCATATTACACAAGATCTGTTTACAGTGATTCGTACATTATTTTTTTTTTTTTTTGTTATATTGATTGAACAGTTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCGGTATGAATCGTGATTTAGTTTTATTGCGTTTGTTTTGATATATTAATTGCTGATATTTGTATAATGAGTTGCTGAAATTATTTGATTTTGCTGAACCAGTGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAGGTAATGTCTATTTATGAGCTATCCTCTTTTTTTTCATTTAAGTGATTGGAGTTCTTAATAGGATAGATAAATTGCTATTTTATGGAGGTAAAAAATTCGTTAAATTGATTTTGGAATACCTTTTGGCAAAAATATATAAATGATAAAGAAGAAAAAAGAACATTTCTCCTTTTAGCTCAAGTCAAGTTCACGGTATGTTAGATTTCAGCCATTTTTTGGATAAGCACATTTTTTTTTTGGATAACTGTGGCGTCTGGGTTAGCCTGCACCTCGACTAATTCCACGTGATATCTGTCATCTCCTACAAGCAACTAGTACCAAATAACTCTTATCCACCAAAGATATAATAGCTGCGAAGAATTCACTAGTCTTTTTGTCTATCGAGATTTGAACGTGAGACCTCATGATACTCAATCCACTTCATTGACCACGAAACCATGCCATTGGGTGCAGATGAGCACATTATTTATAGCCACATATTTGAGATACTTGATCATCATCATTTTGTCATTCATACTATTGATGATTGAATTTGACAGAACCGTTTTGATATTGGTACGTGTTACCTGGATAAGGATTATTGTTTTCTCTAGACTCTAGTACGGTAAATTTTTAAATTTATTAAGATTTTGATACAACAGTTTCGAATTTTGCAGTGTTGTACTCTTATTATAAGTATTGTTATGATTGCATGTGGCTATCCTTACTTTCTCATTATGCAATGTATTGGTACTAGCCTTTTTTTTGTGATCGATTCTATCACATTATGCTCTGACTTAGTACTATTCAGATTCCATGACATACTGTCTTATGGCAACCCTTCTAATACTTAACCATTCAGACTCTTATTTTTGTCCTTTGCCTCGTTATATTGAACATGAGCCTTCATGCTATTTGACTTGCTGCTGTTTTTTATTAACCCCATTTAAAAGGTCGTCGTGACATATTTTGAAAATGATAACAGATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCT</genome_strand>
        <mrna_strand>ATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAG.........................................................................................................TTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCG...................................................................................................TGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316098" ref_strand="+" ref_description="SGN-E316098 [cTOA-23-L7]">
      <seq>cgccttcttctccaaccctacaatctcatcaaatttcactcttcttccattaatatcagttttaagagatcgagagctgcgatgttaggtgttttaaggcgcaaagctatttctagcgcctcttttacttcgtgtgtaaggaaatctctgcatacggttcgacctgcagtatgtaaatctagaattccatctgctgctgcagaagagatatcattgcttactagacaatgtggtcatgtgcgaaatttcaatcagcttgtgctgcctgggtgctcatcaaatttgcgcccagaaagggctgtgaccaatcttttctcaagtccaacactatcaaattggagcaggcctttctgcgcaaatagtggtgataccgttgacgctgttgttccatatatgggtgaatccattagtgatgggacactggccaagttcctgaagaatgttggtgacagagtagaagttgatgagccaattgctcagattgaaacagataaggtaaccattgatgttaccagtcctgaagctggtgtaatcaaaagtttatagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5230" stop="9979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5530" g_stop="5588" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5589" i_stop="5693" i_length="105">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5694" g_stop="5766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="132" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5767" i_stop="5865" i_length="99">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5866" g_stop="5940" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="207" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5941" i_stop="6904" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6905" g_stop="6965" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="268" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6966" i_stop="7043" i_length="78">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7044" g_stop="7071" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="296" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7072" i_stop="8247" i_length="1176">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8248" g_stop="8315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="364" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9300" g_stop="9374" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="439" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9375" i_stop="9475" i_length="101">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9476" g_stop="9531" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="495" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9532" i_stop="9627" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9628" g_stop="9672" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="539" r_length="44" r_score="0.978"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="9673" i_stop="9783" i_length="111">
            <donor d_prob="0.610" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="9784" g_stop="9792" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="548" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E316098" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5530" e_stop="5588"/>
          <exon e_start="5694" e_stop="5766"/>
          <exon e_start="5866" e_stop="5940"/>
          <exon e_start="6905" e_stop="6965"/>
          <exon e_start="7044" e_stop="7071"/>
          <exon e_start="8248" e_stop="8315"/>
          <exon e_start="9300" e_stop="9374"/>
          <exon e_start="9476" e_stop="9531"/>
          <exon e_start="9628" e_stop="9672"/>
          <exon e_start="9784" e_stop="9792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAGGTCTAAAATCTTCATTATCACTGTTCATTTTCTCATATTACACAAGATCTGTTTACAGTGATTCGTACATTATTTTTTTTTTTTTTTGTTATATTGATTGAACAGTTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCGGTATGAATCGTGATTTAGTTTTATTGCGTTTGTTTTGATATATTAATTGCTGATATTTGTATAATGAGTTGCTGAAATTATTTGATTTTGCTGAACCAGTGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAGGTAATGTCTATTTATGAGCTATCCTCTTTTTTTTCATTTAAGTGATTGGAGTTCTTAATAGGATAGATAAATTGCTATTTTATGGAGGTAAAAAATTCGTTAAATTGATTTTGGAATACCTTTTGGCAAAAATATATAAATGATAAAGAAGAAAAAAGAACATTTCTCCTTTTAGCTCAAGTCAAGTTCACGGTATGTTAGATTTCAGCCATTTTTTGGATAAGCACATTTTTTTTTTGGATAACTGTGGCGTCTGGGTTAGCCTGCACCTCGACTAATTCCACGTGATATCTGTCATCTCCTACAAGCAACTAGTACCAAATAACTCTTATCCACCAAAGATATAATAGCTGCGAAGAATTCACTAGTCTTTTTGTCTATCGAGATTTGAACGTGAGACCTCATGATACTCAATCCACTTCATTGACCACGAAACCATGCCATTGGGTGCAGATGAGCACATTATTTATAGCCACATATTTGAGATACTTGATCATCATCATTTTGTCATTCATACTATTGATGATTGAATTTGACAGAACCGTTTTGATATTGGTACGTGTTACCTGGATAAGGATTATTGTTTTCTCTAGACTCTAGTACGGTAAATTTTTAAATTTATTAAGATTTTGATACAACAGTTTCGAATTTTGCAGTGTTGTACTCTTATTATAAGTATTGTTATGATTGCATGTGGCTATCCTTACTTTCTCATTATGCAATGTATTGGTACTAGCCTTTTTTTTGTGATCGATTCTATCACATTATGCTCTGACTTAGTACTATTCAGATTCCATGACATACTGTCTTATGGCAACCCTTCTAATACTTAACCATTCAGACTCTTATTTTTGTCCTTTGCCTCGTTATATTGAACATGAGCCTTCATGCTATTTGACTTGCTGCTGTTTTTTATTAACCCCATTTAAAAGGTCGTCGTGACATATTTTGAAAATGATAACAGATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTGGTATGTGTAACTAATCCATGATGACTCAGTGTATTTATACTGGTGTGCGATATAATTAGCTCCTACTTCTTAATCCAGGGTGCTCATCAAATTTGCGCCCAGAAAGGTTAGTATATATTATTGCTTAACACCTTTCATATATTATTTGAATCTTAGAGCATGAATAAATGCACAATGTATTTATAGAAGTAGCCATTCTATTTTTCTCTGTCTAGGTCAAACTCGGTAGAATTTTCCATTGCTTTATAGTTATATTATCTGCATTCATAGGGACCTAATCGGTGTTGTTGGATTTGCTTTGTATTTTCATTTGGTTGAATGAGTAACTAAAAGTTGAGACACTCCAATTAAATATTAATTACTTTGTGGATTGCCGGTGTGTGCATGTCCTTAGAGGAGACGGAGATAGTGGACCTCTGTCAGTGAATGTACATGTATCATAATGATAGTGTGTGCATGTCACATAACTTGATTTCAAAAGAGAAGTTTGTTCGATTAGTTAGTTTGTTGTGCACAACATCATATATTTTGAAATTGTCTTGAAGCATTTGGGATGTCCTAAAGTGATACCAATAGTGCCACTTTTTTTCATGTGTATATAACATCTTGTATAAAATATTTGCACTAAGCTAGTACAGTTAGCTTAGTCACAAGTTGTGCAAATCAGCTTTGTGTCTAAAATATCATTTACAACTTGTTCAAAAGCTAGTTTGCACCAAAACGCATCTAAGTTAAGGCACTGTATGCTTCTTCTTTTTGCCTTAAAAATTCTGCTATTTTTTTCTCTGAATGTCACATTTTCCCTTGTAGCCAATTAAAAGGACTCCTAGCAAATAACCGGGTAATGCAATTTGATCGGCTAACGTATAAAACACTTGAAGAAGTCTTGACATGAAGAAGATTATATTGAATTTCCATGCAAATTTAAAAAGGGATAGCAGTCAAAGATTGTTATATATGTTAACAATTTCAGTTGTTCTCTGCTAATCAAGCCTAGAAACTTCATTTTTGGTCCCACCGAAAATCATATATTGTCATAATTTATAATATGAATTTTACCCAATATGAAGTGTGTAGGTGTTGGGAATGTTCAGATACATCAATCTTTTACCTTGTTGTGATGCTTGGATTCATATATCTGACCTAACTTGTTTGGGATCGAGGCATATTTGTTGTTGTATGTTAATTAAAAAAAATACGATACTTGGTGATATGTTCATTCTCTCTCTCTCTCTCTCACACACACACCAGTTGGTTATATTAATTAGTGCATTGCTTGCAGGGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTGGTATATTTTTCTAATAATTTATCAAGCTTGCCTGGAACGCTGATGCAAATGAAATTAGTCACGACATGCTTACACTGTATATAGTATTGTTCAAAAATGTAATCTGGTCTCTTGGTATTGTTCCTGCAGTTCATCATGGTCCCAACTACCATCACATGTATTCTTTAGTACCTTTGAACTTATAAATTATCAGTTAGATACTCCTATGTCAGTTGTACCTTCTCTTCTAAATAATTATTATCTTCACATACTTTATTGAAGTTACCCTTTCTTTTCATCTTTTTTGGGATTGCGGTCTTATATGGAATTATATTATAGATACTTAAAAATGTGACATGTATCTTTTGATTGCCTATTATTGTACCAAATGATTGGCTGTTAGTTCTGGTCATTTGCAAATTTCTGTTTGGACGTGGAAGAAGTATTTGCGTTATCTACCTGGAGGATATAACTAGTTAACTCAATTTTAAAAAAATATAGCTAGTTAGCAGTTTCAACTCCGTATAAAGTTCTGTATCATCTATTGGATCGGGACTGCCATTATCATCAACATCGATGCCATCAAGAAGGGCCTGTCTATCATCTTCACCGCATAGGAACTACTTGATCACTCCAATGTTGCCTTCGCATCCTAGGGTTACATATGTCAATATGACTCTTTTCAATAAGTGGAAATCATTATCTTTAAAAGAATTTATGATAAGATGCTAGTTCAATTAGTTTAATGACCCTATCTTAAAGCTTCGCATCTGGTGGAGTAGAAGAAATTTAGAATTAGTTGGAAATTAGCACTCTTGTTTACAGTTAAAGAATGTTGGAATTCTAAATGTATCATGCAATAATGTATTGACAGCTTCCATATATATTTTAATTGTTATTTCATTTGCTTTCTCCTTTTCTCTGTCATCCCTTTTCCCTTATTCTGTATTGCTACAGTTCCTCACTTTTTTTTCTTTTATTTGCGTGTCTATAATTGTAATGTAGGTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGAGTATGTCTTTATTGATGTGGTCTCTGATCCATCTTATATGCAGTAGTATTCATAGTCACTCTGTACTTACTGTTTTTTCATGTTTCCTTCTATATGAGCAGATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAGGTACCCTGTTTCTAATATTAGTTAATTTTAATCACATTATCTCAGGTCTGTCTGGAGATTAATGACACTTATATATGAATGGTTTTTATTGGACAGGTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAGGTAGAACATCTTTGGCACTGGAGCTCTGCGTTGCTCAACCTCCCACCACCTAGTTTATTACATTTTATTTTTTGATCAACAACTTCTGAATCTGGTTTTGAATATCTATAGTTTATAGCC</genome_strand>
        <mrna_strand>CGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAG.........................................................................................................TTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCG...................................................................................................TGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTG..............................................................................GGTGCTCATCAAATTTGCGCCCAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGA.....................................................................................................ATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAG................................................................................................GTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAAT-CAAAAG...............................................................................................................TTTATAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206722" ref_strand="+" ref_description="SGN-E206722 [cLEC-31-I20]">
      <seq>cgccttcttctccaaccctacaatctcatcaaatttcactcttcttccattaatatcagttttaagagatcgagagctgcgatgttaggtgttttaaggcgcaaagctatttctagcgcctcttttacttcgtgtgtaaggaaatctctgcatacggttcgacctgcagtatgtaaatctagaattccatctgctgctgcagaagagatatcattgcttactagacaatgtggtcatgtgcgaaatttcaatcagcttgtgctgcctgggtgctcatcaaatttgcgcccagaaagggctgtgaccaatcttttctcaagtccaacactatcaaattggagcaggcctttctgcgcaaatagtggtgataccgttgacgctgttgttccatatatgggtgaatccattagtgatgggacactggccaagttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5230" stop="9670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5530" g_stop="5588" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5589" i_stop="5693" i_length="105">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5694" g_stop="5766" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="132" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5767" i_stop="5865" i_length="99">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5866" g_stop="5940" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="207" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5941" i_stop="6904" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6905" g_stop="6965" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="268" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6966" i_stop="7043" i_length="78">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7044" g_stop="7071" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="296" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7072" i_stop="8247" i_length="1176">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8248" g_stop="8315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="364" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9300" g_stop="9370" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="435" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E206722" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5530" e_stop="5588"/>
          <exon e_start="5694" e_stop="5766"/>
          <exon e_start="5866" e_stop="5940"/>
          <exon e_start="6905" e_stop="6965"/>
          <exon e_start="7044" e_stop="7071"/>
          <exon e_start="8248" e_stop="8315"/>
          <exon e_start="9300" e_stop="9370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAGGTCTAAAATCTTCATTATCACTGTTCATTTTCTCATATTACACAAGATCTGTTTACAGTGATTCGTACATTATTTTTTTTTTTTTTTGTTATATTGATTGAACAGTTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCGGTATGAATCGTGATTTAGTTTTATTGCGTTTGTTTTGATATATTAATTGCTGATATTTGTATAATGAGTTGCTGAAATTATTTGATTTTGCTGAACCAGTGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAGGTAATGTCTATTTATGAGCTATCCTCTTTTTTTTCATTTAAGTGATTGGAGTTCTTAATAGGATAGATAAATTGCTATTTTATGGAGGTAAAAAATTCGTTAAATTGATTTTGGAATACCTTTTGGCAAAAATATATAAATGATAAAGAAGAAAAAAGAACATTTCTCCTTTTAGCTCAAGTCAAGTTCACGGTATGTTAGATTTCAGCCATTTTTTGGATAAGCACATTTTTTTTTTGGATAACTGTGGCGTCTGGGTTAGCCTGCACCTCGACTAATTCCACGTGATATCTGTCATCTCCTACAAGCAACTAGTACCAAATAACTCTTATCCACCAAAGATATAATAGCTGCGAAGAATTCACTAGTCTTTTTGTCTATCGAGATTTGAACGTGAGACCTCATGATACTCAATCCACTTCATTGACCACGAAACCATGCCATTGGGTGCAGATGAGCACATTATTTATAGCCACATATTTGAGATACTTGATCATCATCATTTTGTCATTCATACTATTGATGATTGAATTTGACAGAACCGTTTTGATATTGGTACGTGTTACCTGGATAAGGATTATTGTTTTCTCTAGACTCTAGTACGGTAAATTTTTAAATTTATTAAGATTTTGATACAACAGTTTCGAATTTTGCAGTGTTGTACTCTTATTATAAGTATTGTTATGATTGCATGTGGCTATCCTTACTTTCTCATTATGCAATGTATTGGTACTAGCCTTTTTTTTGTGATCGATTCTATCACATTATGCTCTGACTTAGTACTATTCAGATTCCATGACATACTGTCTTATGGCAACCCTTCTAATACTTAACCATTCAGACTCTTATTTTTGTCCTTTGCCTCGTTATATTGAACATGAGCCTTCATGCTATTTGACTTGCTGCTGTTTTTTATTAACCCCATTTAAAAGGTCGTCGTGACATATTTTGAAAATGATAACAGATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTGGTATGTGTAACTAATCCATGATGACTCAGTGTATTTATACTGGTGTGCGATATAATTAGCTCCTACTTCTTAATCCAGGGTGCTCATCAAATTTGCGCCCAGAAAGGTTAGTATATATTATTGCTTAACACCTTTCATATATTATTTGAATCTTAGAGCATGAATAAATGCACAATGTATTTATAGAAGTAGCCATTCTATTTTTCTCTGTCTAGGTCAAACTCGGTAGAATTTTCCATTGCTTTATAGTTATATTATCTGCATTCATAGGGACCTAATCGGTGTTGTTGGATTTGCTTTGTATTTTCATTTGGTTGAATGAGTAACTAAAAGTTGAGACACTCCAATTAAATATTAATTACTTTGTGGATTGCCGGTGTGTGCATGTCCTTAGAGGAGACGGAGATAGTGGACCTCTGTCAGTGAATGTACATGTATCATAATGATAGTGTGTGCATGTCACATAACTTGATTTCAAAAGAGAAGTTTGTTCGATTAGTTAGTTTGTTGTGCACAACATCATATATTTTGAAATTGTCTTGAAGCATTTGGGATGTCCTAAAGTGATACCAATAGTGCCACTTTTTTTCATGTGTATATAACATCTTGTATAAAATATTTGCACTAAGCTAGTACAGTTAGCTTAGTCACAAGTTGTGCAAATCAGCTTTGTGTCTAAAATATCATTTACAACTTGTTCAAAAGCTAGTTTGCACCAAAACGCATCTAAGTTAAGGCACTGTATGCTTCTTCTTTTTGCCTTAAAAATTCTGCTATTTTTTTCTCTGAATGTCACATTTTCCCTTGTAGCCAATTAAAAGGACTCCTAGCAAATAACCGGGTAATGCAATTTGATCGGCTAACGTATAAAACACTTGAAGAAGTCTTGACATGAAGAAGATTATATTGAATTTCCATGCAAATTTAAAAAGGGATAGCAGTCAAAGATTGTTATATATGTTAACAATTTCAGTTGTTCTCTGCTAATCAAGCCTAGAAACTTCATTTTTGGTCCCACCGAAAATCATATATTGTCATAATTTATAATATGAATTTTACCCAATATGAAGTGTGTAGGTGTTGGGAATGTTCAGATACATCAATCTTTTACCTTGTTGTGATGCTTGGATTCATATATCTGACCTAACTTGTTTGGGATCGAGGCATATTTGTTGTTGTATGTTAATTAAAAAAAATACGATACTTGGTGATATGTTCATTCTCTCTCTCTCTCTCTCACACACACACCAGTTGGTTATATTAATTAGTGCATTGCTTGCAGGGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTGGTATATTTTTCTAATAATTTATCAAGCTTGCCTGGAACGCTGATGCAAATGAAATTAGTCACGACATGCTTACACTGTATATAGTATTGTTCAAAAATGTAATCTGGTCTCTTGGTATTGTTCCTGCAGTTCATCATGGTCCCAACTACCATCACATGTATTCTTTAGTACCTTTGAACTTATAAATTATCAGTTAGATACTCCTATGTCAGTTGTACCTTCTCTTCTAAATAATTATTATCTTCACATACTTTATTGAAGTTACCCTTTCTTTTCATCTTTTTTGGGATTGCGGTCTTATATGGAATTATATTATAGATACTTAAAAATGTGACATGTATCTTTTGATTGCCTATTATTGTACCAAATGATTGGCTGTTAGTTCTGGTCATTTGCAAATTTCTGTTTGGACGTGGAAGAAGTATTTGCGTTATCTACCTGGAGGATATAACTAGTTAACTCAATTTTAAAAAAATATAGCTAGTTAGCAGTTTCAACTCCGTATAAAGTTCTGTATCATCTATTGGATCGGGACTGCCATTATCATCAACATCGATGCCATCAAGAAGGGCCTGTCTATCATCTTCACCGCATAGGAACTACTTGATCACTCCAATGTTGCCTTCGCATCCTAGGGTTACATATGTCAATATGACTCTTTTCAATAAGTGGAAATCATTATCTTTAAAAGAATTTATGATAAGATGCTAGTTCAATTAGTTTAATGACCCTATCTTAAAGCTTCGCATCTGGTGGAGTAGAAGAAATTTAGAATTAGTTGGAAATTAGCACTCTTGTTTACAGTTAAAGAATGTTGGAATTCTAAATGTATCATGCAATAATGTATTGACAGCTTCCATATATATTTTAATTGTTATTTCATTTGCTTTCTCCTTTTCTCTGTCATCCCTTTTCCCTTATTCTGTATTGCTACAGTTCCTCACTTTTTTTTCTTTTATTTGCGTGTCTATAATTGTAATGTAGGTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTG</genome_strand>
        <mrna_strand>CGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAG.........................................................................................................TTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCG...................................................................................................TGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTG..............................................................................GGTGCTCATCAAATTTGCGCCCAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268266" ref_strand="+" ref_description="SGN-E268266 [cLEM-3-M22]">
      <seq>caaagctatttctagcgcctcttttacttcgtgtgtaaggaaatctctgcatacggttcgacctgcagtatgtaaatctagaattccatctgctgctgcagaagagatatcattgcttactagacaatgtggtcatgtgcgaaatttcaatcagcttgtgctgcctgggtgctcatcaaatttgcgcccagaaagggctgtgaccaatcttttctcaagtccaacactatcaaattggagcaggcctttctgcgcaaatagtggtgataccgttgacgctgttgttccatatatgggtgaatccattagtgatgggacactggccaagttcctgaagaatgttggtgacagagtagaagttgatgagccaattgctcagattgaaacagataaggtaaccattgatgttaccagtcctgaagctggtgtaatccaaaagtttatagccaaggaaggggacactgtcgaaccaggcaataaagttgctatcatttcaaaatctggtgagggtgtggaacatgttgctccatctgagaagtcctctgagaaagtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5436" stop="10199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5736" g_stop="5766" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5767" i_stop="5865" i_length="99">
            <donor d_prob="0.870" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5866" g_stop="5940" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="106" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5941" i_stop="6904" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6905" g_stop="6965" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="167" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6966" i_stop="7043" i_length="78">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7044" g_stop="7071" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="195" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7072" i_stop="8247" i_length="1176">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8248" g_stop="8315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="263" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9300" g_stop="9374" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="338" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9375" i_stop="9475" i_length="101">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9476" g_stop="9531" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="394" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9532" i_stop="9627" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9628" g_stop="9672" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="439" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9673" i_stop="9783" i_length="111">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9784" g_stop="9899" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="555" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E268266" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5736" e_stop="5766"/>
          <exon e_start="5866" e_stop="5940"/>
          <exon e_start="6905" e_stop="6965"/>
          <exon e_start="7044" e_stop="7071"/>
          <exon e_start="8248" e_stop="8315"/>
          <exon e_start="9300" e_stop="9374"/>
          <exon e_start="9476" e_stop="9531"/>
          <exon e_start="9628" e_stop="9672"/>
          <exon e_start="9784" e_stop="9899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCTATTTCTAGCGCCTCTTTTACTTCGGTATGAATCGTGATTTAGTTTTATTGCGTTTGTTTTGATATATTAATTGCTGATATTTGTATAATGAGTTGCTGAAATTATTTGATTTTGCTGAACCAGTGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAGGTAATGTCTATTTATGAGCTATCCTCTTTTTTTTCATTTAAGTGATTGGAGTTCTTAATAGGATAGATAAATTGCTATTTTATGGAGGTAAAAAATTCGTTAAATTGATTTTGGAATACCTTTTGGCAAAAATATATAAATGATAAAGAAGAAAAAAGAACATTTCTCCTTTTAGCTCAAGTCAAGTTCACGGTATGTTAGATTTCAGCCATTTTTTGGATAAGCACATTTTTTTTTTGGATAACTGTGGCGTCTGGGTTAGCCTGCACCTCGACTAATTCCACGTGATATCTGTCATCTCCTACAAGCAACTAGTACCAAATAACTCTTATCCACCAAAGATATAATAGCTGCGAAGAATTCACTAGTCTTTTTGTCTATCGAGATTTGAACGTGAGACCTCATGATACTCAATCCACTTCATTGACCACGAAACCATGCCATTGGGTGCAGATGAGCACATTATTTATAGCCACATATTTGAGATACTTGATCATCATCATTTTGTCATTCATACTATTGATGATTGAATTTGACAGAACCGTTTTGATATTGGTACGTGTTACCTGGATAAGGATTATTGTTTTCTCTAGACTCTAGTACGGTAAATTTTTAAATTTATTAAGATTTTGATACAACAGTTTCGAATTTTGCAGTGTTGTACTCTTATTATAAGTATTGTTATGATTGCATGTGGCTATCCTTACTTTCTCATTATGCAATGTATTGGTACTAGCCTTTTTTTTGTGATCGATTCTATCACATTATGCTCTGACTTAGTACTATTCAGATTCCATGACATACTGTCTTATGGCAACCCTTCTAATACTTAACCATTCAGACTCTTATTTTTGTCCTTTGCCTCGTTATATTGAACATGAGCCTTCATGCTATTTGACTTGCTGCTGTTTTTTATTAACCCCATTTAAAAGGTCGTCGTGACATATTTTGAAAATGATAACAGATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTGGTATGTGTAACTAATCCATGATGACTCAGTGTATTTATACTGGTGTGCGATATAATTAGCTCCTACTTCTTAATCCAGGGTGCTCATCAAATTTGCGCCCAGAAAGGTTAGTATATATTATTGCTTAACACCTTTCATATATTATTTGAATCTTAGAGCATGAATAAATGCACAATGTATTTATAGAAGTAGCCATTCTATTTTTCTCTGTCTAGGTCAAACTCGGTAGAATTTTCCATTGCTTTATAGTTATATTATCTGCATTCATAGGGACCTAATCGGTGTTGTTGGATTTGCTTTGTATTTTCATTTGGTTGAATGAGTAACTAAAAGTTGAGACACTCCAATTAAATATTAATTACTTTGTGGATTGCCGGTGTGTGCATGTCCTTAGAGGAGACGGAGATAGTGGACCTCTGTCAGTGAATGTACATGTATCATAATGATAGTGTGTGCATGTCACATAACTTGATTTCAAAAGAGAAGTTTGTTCGATTAGTTAGTTTGTTGTGCACAACATCATATATTTTGAAATTGTCTTGAAGCATTTGGGATGTCCTAAAGTGATACCAATAGTGCCACTTTTTTTCATGTGTATATAACATCTTGTATAAAATATTTGCACTAAGCTAGTACAGTTAGCTTAGTCACAAGTTGTGCAAATCAGCTTTGTGTCTAAAATATCATTTACAACTTGTTCAAAAGCTAGTTTGCACCAAAACGCATCTAAGTTAAGGCACTGTATGCTTCTTCTTTTTGCCTTAAAAATTCTGCTATTTTTTTCTCTGAATGTCACATTTTCCCTTGTAGCCAATTAAAAGGACTCCTAGCAAATAACCGGGTAATGCAATTTGATCGGCTAACGTATAAAACACTTGAAGAAGTCTTGACATGAAGAAGATTATATTGAATTTCCATGCAAATTTAAAAAGGGATAGCAGTCAAAGATTGTTATATATGTTAACAATTTCAGTTGTTCTCTGCTAATCAAGCCTAGAAACTTCATTTTTGGTCCCACCGAAAATCATATATTGTCATAATTTATAATATGAATTTTACCCAATATGAAGTGTGTAGGTGTTGGGAATGTTCAGATACATCAATCTTTTACCTTGTTGTGATGCTTGGATTCATATATCTGACCTAACTTGTTTGGGATCGAGGCATATTTGTTGTTGTATGTTAATTAAAAAAAATACGATACTTGGTGATATGTTCATTCTCTCTCTCTCTCTCTCACACACACACCAGTTGGTTATATTAATTAGTGCATTGCTTGCAGGGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTGGTATATTTTTCTAATAATTTATCAAGCTTGCCTGGAACGCTGATGCAAATGAAATTAGTCACGACATGCTTACACTGTATATAGTATTGTTCAAAAATGTAATCTGGTCTCTTGGTATTGTTCCTGCAGTTCATCATGGTCCCAACTACCATCACATGTATTCTTTAGTACCTTTGAACTTATAAATTATCAGTTAGATACTCCTATGTCAGTTGTACCTTCTCTTCTAAATAATTATTATCTTCACATACTTTATTGAAGTTACCCTTTCTTTTCATCTTTTTTGGGATTGCGGTCTTATATGGAATTATATTATAGATACTTAAAAATGTGACATGTATCTTTTGATTGCCTATTATTGTACCAAATGATTGGCTGTTAGTTCTGGTCATTTGCAAATTTCTGTTTGGACGTGGAAGAAGTATTTGCGTTATCTACCTGGAGGATATAACTAGTTAACTCAATTTTAAAAAAATATAGCTAGTTAGCAGTTTCAACTCCGTATAAAGTTCTGTATCATCTATTGGATCGGGACTGCCATTATCATCAACATCGATGCCATCAAGAAGGGCCTGTCTATCATCTTCACCGCATAGGAACTACTTGATCACTCCAATGTTGCCTTCGCATCCTAGGGTTACATATGTCAATATGACTCTTTTCAATAAGTGGAAATCATTATCTTTAAAAGAATTTATGATAAGATGCTAGTTCAATTAGTTTAATGACCCTATCTTAAAGCTTCGCATCTGGTGGAGTAGAAGAAATTTAGAATTAGTTGGAAATTAGCACTCTTGTTTACAGTTAAAGAATGTTGGAATTCTAAATGTATCATGCAATAATGTATTGACAGCTTCCATATATATTTTAATTGTTATTTCATTTGCTTTCTCCTTTTCTCTGTCATCCCTTTTCCCTTATTCTGTATTGCTACAGTTCCTCACTTTTTTTTCTTTTATTTGCGTGTCTATAATTGTAATGTAGGTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGAGTATGTCTTTATTGATGTGGTCTCTGATCCATCTTATATGCAGTAGTATTCATAGTCACTCTGTACTTACTGTTTTTTCATGTTTCCTTCTATATGAGCAGATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAGGTACCCTGTTTCTAATATTAGTTAATTTTAATCACATTATCTCAGGTCTGTCTGGAGATTAATGACACTTATATATGAATGGTTTTTATTGGACAGGTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAGGTAGAACATCTTTGGCACTGGAGCTCTGCGTTGCTCAACCTCCCACCACCTAGTTTATTACATTTTATTTTTTGATCAACAACTTCTGAATCTGGTTTTGAATATCTATAGTTTATAGCCAAGGAAGGGGACACTGTCGAACCAGGCAATAAAGTTGCTATCATTTCAAAATCTGGTGAGGGTGTGGAACATGTTGCTCCATCTGAGAAGTCCTCTGAGAAAGTAGC</genome_strand>
        <mrna_strand>CAAAGCTATTTCTAGCGCCTCTTTTACTTCG...................................................................................................TGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTG..............................................................................GGTGCTCATCAAATTTGCGCCCAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGA.....................................................................................................ATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAG................................................................................................GTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAG...............................................................................................................TTTATAGCCAAGGAAGGGGACACTGTCGAACCAGGCAATAAAGTTGCTATCATTTCAAAATCTGGTGAGGGTGTGGAACATGTTGCTCCATCTGAGAAGTCCTCTGAGAAAGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260432" ref_strand="+" ref_description="SGN-E260432 [cLEG-66-I13]">
      <seq>tcgtgtgtaaggaaatctctgcatacggttcgacctgcagtatgtaaatctagaattccatctgctgctgcagaagagatatcattgcttactagacaatgtggtcatgtgcgaaatttcaatcagcttgtgctgcctgggtgctcatcaaatttgcgcccagaaagggctgtgaccaatcttttctcaagtccaacactatcaaattggagcaggcctttctgcgcaaatagtggtgataccgttgacgctgttgttccatatatgggtgaatccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5565" stop="9643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5764" g_stop="5766" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5767" i_stop="5865" i_length="99">
            <donor d_prob="0.870" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5866" g_stop="5940" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="78" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5941" i_stop="6904" i_length="964">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.561" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6905" g_stop="6965" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="139" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6966" i_stop="7043" i_length="78">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.473" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7044" g_stop="7071" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="167" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7072" i_stop="8247" i_length="1176">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8248" g_stop="8315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="235" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9300" g_stop="9343" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="279" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E260432" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5764" e_stop="5766"/>
          <exon e_start="5866" e_stop="5940"/>
          <exon e_start="6905" e_stop="6965"/>
          <exon e_start="7044" e_stop="7071"/>
          <exon e_start="8248" e_stop="8315"/>
          <exon e_start="9300" e_stop="9343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGTATGAATCGTGATTTAGTTTTATTGCGTTTGTTTTGATATATTAATTGCTGATATTTGTATAATGAGTTGCTGAAATTATTTGATTTTGCTGAACCAGTGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAGGTAATGTCTATTTATGAGCTATCCTCTTTTTTTTCATTTAAGTGATTGGAGTTCTTAATAGGATAGATAAATTGCTATTTTATGGAGGTAAAAAATTCGTTAAATTGATTTTGGAATACCTTTTGGCAAAAATATATAAATGATAAAGAAGAAAAAAGAACATTTCTCCTTTTAGCTCAAGTCAAGTTCACGGTATGTTAGATTTCAGCCATTTTTTGGATAAGCACATTTTTTTTTTGGATAACTGTGGCGTCTGGGTTAGCCTGCACCTCGACTAATTCCACGTGATATCTGTCATCTCCTACAAGCAACTAGTACCAAATAACTCTTATCCACCAAAGATATAATAGCTGCGAAGAATTCACTAGTCTTTTTGTCTATCGAGATTTGAACGTGAGACCTCATGATACTCAATCCACTTCATTGACCACGAAACCATGCCATTGGGTGCAGATGAGCACATTATTTATAGCCACATATTTGAGATACTTGATCATCATCATTTTGTCATTCATACTATTGATGATTGAATTTGACAGAACCGTTTTGATATTGGTACGTGTTACCTGGATAAGGATTATTGTTTTCTCTAGACTCTAGTACGGTAAATTTTTAAATTTATTAAGATTTTGATACAACAGTTTCGAATTTTGCAGTGTTGTACTCTTATTATAAGTATTGTTATGATTGCATGTGGCTATCCTTACTTTCTCATTATGCAATGTATTGGTACTAGCCTTTTTTTTGTGATCGATTCTATCACATTATGCTCTGACTTAGTACTATTCAGATTCCATGACATACTGTCTTATGGCAACCCTTCTAATACTTAACCATTCAGACTCTTATTTTTGTCCTTTGCCTCGTTATATTGAACATGAGCCTTCATGCTATTTGACTTGCTGCTGTTTTTTATTAACCCCATTTAAAAGGTCGTCGTGACATATTTTGAAAATGATAACAGATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTGGTATGTGTAACTAATCCATGATGACTCAGTGTATTTATACTGGTGTGCGATATAATTAGCTCCTACTTCTTAATCCAGGGTGCTCATCAAATTTGCGCCCAGAAAGGTTAGTATATATTATTGCTTAACACCTTTCATATATTATTTGAATCTTAGAGCATGAATAAATGCACAATGTATTTATAGAAGTAGCCATTCTATTTTTCTCTGTCTAGGTCAAACTCGGTAGAATTTTCCATTGCTTTATAGTTATATTATCTGCATTCATAGGGACCTAATCGGTGTTGTTGGATTTGCTTTGTATTTTCATTTGGTTGAATGAGTAACTAAAAGTTGAGACACTCCAATTAAATATTAATTACTTTGTGGATTGCCGGTGTGTGCATGTCCTTAGAGGAGACGGAGATAGTGGACCTCTGTCAGTGAATGTACATGTATCATAATGATAGTGTGTGCATGTCACATAACTTGATTTCAAAAGAGAAGTTTGTTCGATTAGTTAGTTTGTTGTGCACAACATCATATATTTTGAAATTGTCTTGAAGCATTTGGGATGTCCTAAAGTGATACCAATAGTGCCACTTTTTTTCATGTGTATATAACATCTTGTATAAAATATTTGCACTAAGCTAGTACAGTTAGCTTAGTCACAAGTTGTGCAAATCAGCTTTGTGTCTAAAATATCATTTACAACTTGTTCAAAAGCTAGTTTGCACCAAAACGCATCTAAGTTAAGGCACTGTATGCTTCTTCTTTTTGCCTTAAAAATTCTGCTATTTTTTTCTCTGAATGTCACATTTTCCCTTGTAGCCAATTAAAAGGACTCCTAGCAAATAACCGGGTAATGCAATTTGATCGGCTAACGTATAAAACACTTGAAGAAGTCTTGACATGAAGAAGATTATATTGAATTTCCATGCAAATTTAAAAAGGGATAGCAGTCAAAGATTGTTATATATGTTAACAATTTCAGTTGTTCTCTGCTAATCAAGCCTAGAAACTTCATTTTTGGTCCCACCGAAAATCATATATTGTCATAATTTATAATATGAATTTTACCCAATATGAAGTGTGTAGGTGTTGGGAATGTTCAGATACATCAATCTTTTACCTTGTTGTGATGCTTGGATTCATATATCTGACCTAACTTGTTTGGGATCGAGGCATATTTGTTGTTGTATGTTAATTAAAAAAAATACGATACTTGGTGATATGTTCATTCTCTCTCTCTCTCTCTCACACACACACCAGTTGGTTATATTAATTAGTGCATTGCTTGCAGGGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTGGTATATTTTTCTAATAATTTATCAAGCTTGCCTGGAACGCTGATGCAAATGAAATTAGTCACGACATGCTTACACTGTATATAGTATTGTTCAAAAATGTAATCTGGTCTCTTGGTATTGTTCCTGCAGTTCATCATGGTCCCAACTACCATCACATGTATTCTTTAGTACCTTTGAACTTATAAATTATCAGTTAGATACTCCTATGTCAGTTGTACCTTCTCTTCTAAATAATTATTATCTTCACATACTTTATTGAAGTTACCCTTTCTTTTCATCTTTTTTGGGATTGCGGTCTTATATGGAATTATATTATAGATACTTAAAAATGTGACATGTATCTTTTGATTGCCTATTATTGTACCAAATGATTGGCTGTTAGTTCTGGTCATTTGCAAATTTCTGTTTGGACGTGGAAGAAGTATTTGCGTTATCTACCTGGAGGATATAACTAGTTAACTCAATTTTAAAAAAATATAGCTAGTTAGCAGTTTCAACTCCGTATAAAGTTCTGTATCATCTATTGGATCGGGACTGCCATTATCATCAACATCGATGCCATCAAGAAGGGCCTGTCTATCATCTTCACCGCATAGGAACTACTTGATCACTCCAATGTTGCCTTCGCATCCTAGGGTTACATATGTCAATATGACTCTTTTCAATAAGTGGAAATCATTATCTTTAAAAGAATTTATGATAAGATGCTAGTTCAATTAGTTTAATGACCCTATCTTAAAGCTTCGCATCTGGTGGAGTAGAAGAAATTTAGAATTAGTTGGAAATTAGCACTCTTGTTTACAGTTAAAGAATGTTGGAATTCTAAATGTATCATGCAATAATGTATTGACAGCTTCCATATATATTTTAATTGTTATTTCATTTGCTTTCTCCTTTTCTCTGTCATCCCTTTTCCCTTATTCTGTATTGCTACAGTTCCTCACTTTTTTTTCTTTTATTTGCGTGTCTATAATTGTAATGTAGGTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATT</genome_strand>
        <mrna_strand>TCG...................................................................................................TGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTG..............................................................................GGTGCTCATCAAATTTGCGCCCAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268752" ref_strand="+" ref_description="SGN-E268752 [cLEM-16-L11]">
      <seq>gcttactagacaatgtggtcttgtgcgaaatttcaatcagcttgtgctgcctgggtgctctcaaatttgcgcccagaaagggctgtgacctatcttttctcaagtccaacactatcaaattggagcaagcctttctgcgcaaatagtggtgataccgttgacgctgttgttccatatatgggtgaatccattagtgatgggacactggccaagttcctgaagaatgttggtgacagagtagaagttgatgagccaattgctcagattgaaacagataaagtaaccattgatgttaccagtcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="6613" stop="9855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6913" g_stop="6965" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6966" i_stop="7043" i_length="78">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.473" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7044" g_stop="7071" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="80" r_length="27" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7072" i_stop="8247" i_length="1176">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8248" g_stop="8315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="148" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984">
            <donor d_prob="0.918" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9300" g_stop="9374" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="223" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9375" i_stop="9475" i_length="101">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9476" g_stop="9531" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="279" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9532" i_stop="9627" i_length="96">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9628" g_stop="9653" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="305" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E268752" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6913" e_stop="6965"/>
          <exon e_start="7044" e_stop="7071"/>
          <exon e_start="8248" e_stop="8315"/>
          <exon e_start="9300" e_stop="9374"/>
          <exon e_start="9476" e_stop="9531"/>
          <exon e_start="9628" e_stop="9653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTGGTATGTGTAACTAATCCATGATGACTCAGTGTATTTATACTGGTGTGCGATATAATTAGCTCCTACTTCTTAATCCAGGGTGCTCATCAAATTTGCGCCCAGAAAGGTTAGTATATATTATTGCTTAACACCTTTCATATATTATTTGAATCTTAGAGCATGAATAAATGCACAATGTATTTATAGAAGTAGCCATTCTATTTTTCTCTGTCTAGGTCAAACTCGGTAGAATTTTCCATTGCTTTATAGTTATATTATCTGCATTCATAGGGACCTAATCGGTGTTGTTGGATTTGCTTTGTATTTTCATTTGGTTGAATGAGTAACTAAAAGTTGAGACACTCCAATTAAATATTAATTACTTTGTGGATTGCCGGTGTGTGCATGTCCTTAGAGGAGACGGAGATAGTGGACCTCTGTCAGTGAATGTACATGTATCATAATGATAGTGTGTGCATGTCACATAACTTGATTTCAAAAGAGAAGTTTGTTCGATTAGTTAGTTTGTTGTGCACAACATCATATATTTTGAAATTGTCTTGAAGCATTTGGGATGTCCTAAAGTGATACCAATAGTGCCACTTTTTTTCATGTGTATATAACATCTTGTATAAAATATTTGCACTAAGCTAGTACAGTTAGCTTAGTCACAAGTTGTGCAAATCAGCTTTGTGTCTAAAATATCATTTACAACTTGTTCAAAAGCTAGTTTGCACCAAAACGCATCTAAGTTAAGGCACTGTATGCTTCTTCTTTTTGCCTTAAAAATTCTGCTATTTTTTTCTCTGAATGTCACATTTTCCCTTGTAGCCAATTAAAAGGACTCCTAGCAAATAACCGGGTAATGCAATTTGATCGGCTAACGTATAAAACACTTGAAGAAGTCTTGACATGAAGAAGATTATATTGAATTTCCATGCAAATTTAAAAAGGGATAGCAGTCAAAGATTGTTATATATGTTAACAATTTCAGTTGTTCTCTGCTAATCAAGCCTAGAAACTTCATTTTTGGTCCCACCGAAAATCATATATTGTCATAATTTATAATATGAATTTTACCCAATATGAAGTGTGTAGGTGTTGGGAATGTTCAGATACATCAATCTTTTACCTTGTTGTGATGCTTGGATTCATATATCTGACCTAACTTGTTTGGGATCGAGGCATATTTGTTGTTGTATGTTAATTAAAAAAAATACGATACTTGGTGATATGTTCATTCTCTCTCTCTCTCTCTCACACACACACCAGTTGGTTATATTAATTAGTGCATTGCTTGCAGGGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTGGTATATTTTTCTAATAATTTATCAAGCTTGCCTGGAACGCTGATGCAAATGAAATTAGTCACGACATGCTTACACTGTATATAGTATTGTTCAAAAATGTAATCTGGTCTCTTGGTATTGTTCCTGCAGTTCATCATGGTCCCAACTACCATCACATGTATTCTTTAGTACCTTTGAACTTATAAATTATCAGTTAGATACTCCTATGTCAGTTGTACCTTCTCTTCTAAATAATTATTATCTTCACATACTTTATTGAAGTTACCCTTTCTTTTCATCTTTTTTGGGATTGCGGTCTTATATGGAATTATATTATAGATACTTAAAAATGTGACATGTATCTTTTGATTGCCTATTATTGTACCAAATGATTGGCTGTTAGTTCTGGTCATTTGCAAATTTCTGTTTGGACGTGGAAGAAGTATTTGCGTTATCTACCTGGAGGATATAACTAGTTAACTCAATTTTAAAAAAATATAGCTAGTTAGCAGTTTCAACTCCGTATAAAGTTCTGTATCATCTATTGGATCGGGACTGCCATTATCATCAACATCGATGCCATCAAGAAGGGCCTGTCTATCATCTTCACCGCATAGGAACTACTTGATCACTCCAATGTTGCCTTCGCATCCTAGGGTTACATATGTCAATATGACTCTTTTCAATAAGTGGAAATCATTATCTTTAAAAGAATTTATGATAAGATGCTAGTTCAATTAGTTTAATGACCCTATCTTAAAGCTTCGCATCTGGTGGAGTAGAAGAAATTTAGAATTAGTTGGAAATTAGCACTCTTGTTTACAGTTAAAGAATGTTGGAATTCTAAATGTATCATGCAATAATGTATTGACAGCTTCCATATATATTTTAATTGTTATTTCATTTGCTTTCTCCTTTTCTCTGTCATCCCTTTTCCCTTATTCTGTATTGCTACAGTTCCTCACTTTTTTTTCTTTTATTTGCGTGTCTATAATTGTAATGTAGGTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGAGTATGTCTTTATTGATGTGGTCTCTGATCCATCTTATATGCAGTAGTATTCATAGTCACTCTGTACTTACTGTTTTTTCATGTTTCCTTCTATATGAGCAGATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAGGTACCCTGTTTCTAATATTAGTTAATTTTAATCACATTATCTCAGGTCTGTCTGGAGATTAATGACACTTATATATGAATGGTTTTTATTGGACAGGTAACCATTGATGTTACCAGTCCTGA</genome_strand>
        <mrna_strand>GCTTACTAGACAATGTGGTCTTGTGCGAAATTTCAATCAGCTTGTGCTGCCTG..............................................................................GGTGCTC-TCAAATTTGCGCCCAGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGACCTATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAAGCCTTTCTGCGCAAATAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGA.....................................................................................................ATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAA................................................................................................GTAACCATTGATGTTACCAGTCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250939" ref_strand="+" ref_description="SGN-E250939 [cLEG-13-B3]">
      <seq>aaatttgcgcccagaaagggctgtgaccaatcttttctcaagtccaacactatcaaattggagcaggcctttctgcgcaaatagtggtgataccgttgacgctgttgttccatatatgggtgaatccattagtgatgggacactggccaagttcctgaagaatgttggtgacagagtagaagttgatgagccaattgctcagattgaaacagataaggtaaccattgatgttaccagtcctgaagctggtgtaatccaaaagtttatagccaaggaaggggacactgtcgaaccaggcaataaagttgctatcatttcaaaatctggtgagggtgtggaacatgttgctccatctgagaagtcctctgagaaagtagctcctgcagctgaggataagaaagaagaaaaggcaaaacctcaagttgagacaactcccgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="7946" stop="10260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8248" g_stop="8315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="86" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9300" g_stop="9374" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="161" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9375" i_stop="9475" i_length="101">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9476" g_stop="9531" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="217" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9532" i_stop="9627" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9628" g_stop="9672" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="262" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9673" i_stop="9783" i_length="111">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9784" g_stop="9960" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="439" r_length="177" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E250939" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8248" e_stop="8315"/>
          <exon e_start="9300" e_stop="9374"/>
          <exon e_start="9476" e_stop="9531"/>
          <exon e_start="9628" e_stop="9672"/>
          <exon e_start="9784" e_stop="9960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTGGTATATTTTTCTAATAATTTATCAAGCTTGCCTGGAACGCTGATGCAAATGAAATTAGTCACGACATGCTTACACTGTATATAGTATTGTTCAAAAATGTAATCTGGTCTCTTGGTATTGTTCCTGCAGTTCATCATGGTCCCAACTACCATCACATGTATTCTTTAGTACCTTTGAACTTATAAATTATCAGTTAGATACTCCTATGTCAGTTGTACCTTCTCTTCTAAATAATTATTATCTTCACATACTTTATTGAAGTTACCCTTTCTTTTCATCTTTTTTGGGATTGCGGTCTTATATGGAATTATATTATAGATACTTAAAAATGTGACATGTATCTTTTGATTGCCTATTATTGTACCAAATGATTGGCTGTTAGTTCTGGTCATTTGCAAATTTCTGTTTGGACGTGGAAGAAGTATTTGCGTTATCTACCTGGAGGATATAACTAGTTAACTCAATTTTAAAAAAATATAGCTAGTTAGCAGTTTCAACTCCGTATAAAGTTCTGTATCATCTATTGGATCGGGACTGCCATTATCATCAACATCGATGCCATCAAGAAGGGCCTGTCTATCATCTTCACCGCATAGGAACTACTTGATCACTCCAATGTTGCCTTCGCATCCTAGGGTTACATATGTCAATATGACTCTTTTCAATAAGTGGAAATCATTATCTTTAAAAGAATTTATGATAAGATGCTAGTTCAATTAGTTTAATGACCCTATCTTAAAGCTTCGCATCTGGTGGAGTAGAAGAAATTTAGAATTAGTTGGAAATTAGCACTCTTGTTTACAGTTAAAGAATGTTGGAATTCTAAATGTATCATGCAATAATGTATTGACAGCTTCCATATATATTTTAATTGTTATTTCATTTGCTTTCTCCTTTTCTCTGTCATCCCTTTTCCCTTATTCTGTATTGCTACAGTTCCTCACTTTTTTTTCTTTTATTTGCGTGTCTATAATTGTAATGTAGGTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGAGTATGTCTTTATTGATGTGGTCTCTGATCCATCTTATATGCAGTAGTATTCATAGTCACTCTGTACTTACTGTTTTTTCATGTTTCCTTCTATATGAGCAGATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAGGTACCCTGTTTCTAATATTAGTTAATTTTAATCACATTATCTCAGGTCTGTCTGGAGATTAATGACACTTATATATGAATGGTTTTTATTGGACAGGTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAGGTAGAACATCTTTGGCACTGGAGCTCTGCGTTGCTCAACCTCCCACCACCTAGTTTATTACATTTTATTTTTTGATCAACAACTTCTGAATCTGGTTTTGAATATCTATAGTTTATAGCCAAGGAAGGGGACACTGTCGAACCAGGCAATAAAGTTGCTATCATTTCAAAATCTGGTGAGGGTGTGGAACATGTTGCTCCATCTGAGAAGTCCTCTGAGAAAGTAGCTCCTGCAGCTGAGGATAAGAAAGAGGAAAAGGCAAAACCTCAAGTTGAGACAACTCCCGTC</genome_strand>
        <mrna_strand>GGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGA.....................................................................................................ATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAG................................................................................................GTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAG...............................................................................................................TTTATAGCCAAGGAAGGGGACACTGTCGAACCAGGCAATAAAGTTGCTATCATTTCAAAATCTGGTGAGGGTGTGGAACATGTTGCTCCATCTGAGAAGTCCTCTGAGAAAGTAGCTCCTGCAGCTGAGGATAAGAAAGAAGAAAAGGCAAAACCTCAAGTTGAGACAACTCCCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250847" ref_strand="+" ref_description="SGN-E250847 [cLEG-13-B15]">
      <seq>aatttgcgcccataaagggctgtgaccaatcttttctcaagtccaacactatcaggttggagcaggcctttctgcgcaaatagtggtgataccgttgacgctgttgttccatatatgggtgaatccattagtgatgggacactggccaagttcctgaagaatgttggtgacagagtagaagttgatgagccaattgctcagattgaaacagataaggtaaccattgatgttaccagtcctgaagctggtgtgatccaaaagtttatagccaaggaaggggacactgtcgaaccaggcaataaagttgctatcatttcaaaatctggtgagggtgtggaacatgttgctccatctgagaagtcctctgagaaagtagctcctgcagctgatgataagaaagaggaaaaggcaaaacctcaagttgagacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="7941" stop="10253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8248" g_stop="8315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="85" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984">
            <donor d_prob="0.918" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9300" g_stop="9374" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="160" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9375" i_stop="9475" i_length="101">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9476" g_stop="9531" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="216" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9532" i_stop="9627" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9628" g_stop="9672" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="261" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9673" i_stop="9783" i_length="111">
            <donor d_prob="0.610" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9784" g_stop="9953" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="431" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E250847" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8248" e_stop="8315"/>
          <exon e_start="9300" e_stop="9374"/>
          <exon e_start="9476" e_stop="9531"/>
          <exon e_start="9628" e_stop="9672"/>
          <exon e_start="9784" e_stop="9953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTGGTATATTTTTCTAATAATTTATCAAGCTTGCCTGGAACGCTGATGCAAATGAAATTAGTCACGACATGCTTACACTGTATATAGTATTGTTCAAAAATGTAATCTGGTCTCTTGGTATTGTTCCTGCAGTTCATCATGGTCCCAACTACCATCACATGTATTCTTTAGTACCTTTGAACTTATAAATTATCAGTTAGATACTCCTATGTCAGTTGTACCTTCTCTTCTAAATAATTATTATCTTCACATACTTTATTGAAGTTACCCTTTCTTTTCATCTTTTTTGGGATTGCGGTCTTATATGGAATTATATTATAGATACTTAAAAATGTGACATGTATCTTTTGATTGCCTATTATTGTACCAAATGATTGGCTGTTAGTTCTGGTCATTTGCAAATTTCTGTTTGGACGTGGAAGAAGTATTTGCGTTATCTACCTGGAGGATATAACTAGTTAACTCAATTTTAAAAAAATATAGCTAGTTAGCAGTTTCAACTCCGTATAAAGTTCTGTATCATCTATTGGATCGGGACTGCCATTATCATCAACATCGATGCCATCAAGAAGGGCCTGTCTATCATCTTCACCGCATAGGAACTACTTGATCACTCCAATGTTGCCTTCGCATCCTAGGGTTACATATGTCAATATGACTCTTTTCAATAAGTGGAAATCATTATCTTTAAAAGAATTTATGATAAGATGCTAGTTCAATTAGTTTAATGACCCTATCTTAAAGCTTCGCATCTGGTGGAGTAGAAGAAATTTAGAATTAGTTGGAAATTAGCACTCTTGTTTACAGTTAAAGAATGTTGGAATTCTAAATGTATCATGCAATAATGTATTGACAGCTTCCATATATATTTTAATTGTTATTTCATTTGCTTTCTCCTTTTCTCTGTCATCCCTTTTCCCTTATTCTGTATTGCTACAGTTCCTCACTTTTTTTTCTTTTATTTGCGTGTCTATAATTGTAATGTAGGTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGAGTATGTCTTTATTGATGTGGTCTCTGATCCATCTTATATGCAGTAGTATTCATAGTCACTCTGTACTTACTGTTTTTTCATGTTTCCTTCTATATGAGCAGATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAGGTACCCTGTTTCTAATATTAGTTAATTTTAATCACATTATCTCAGGTCTGTCTGGAGATTAATGACACTTATATATGAATGGTTTTTATTGGACAGGTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAGGTAGAACATCTTTGGCACTGGAGCTCTGCGTTGCTCAACCTCCCACCACCTAGTTTATTACATTTTATTTTTTGATCAACAACTTCTGAATCTGGTTTTGAATATCTATAGTTTATAGCCAAGGAAGGGGACACTGTCGAACCAGGCAATAAAGTTGCTATCATTTCAAAATCTGGTGAGGGTGTGGAACATGTTGCTCCATCTGAGAAGTCCTCTGAGAAAGTAGCTCCTGCAGCTGAGGATAAGAAAGAGGAAAAGGCAAAACCTCAAGTTGAGACAAC</genome_strand>
        <mrna_strand>GGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAGGTTGGAGCAGGCCTTTCTGCGCAAATAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGA.....................................................................................................ATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAG................................................................................................GTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTGATCCAAAAG...............................................................................................................TTTATAGCCAAGGAAGGGGACACTGTCGAACCAGGCAATAAAGTTGCTATCATTTCAAAATCTGGTGAGGGTGTGGAACATGTTGCTCCATCTGAGAAGTCCTCTGAGAAAGTAGCTCCTGCAGCTGATGATAAGAAAGAGGAAAAGGCAAAACCTCAAGTTGAGACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272711" ref_strand="+" ref_description="SGN-E272711 [cLEM-21-I10]">
      <seq>tcaaattggagcaggcctttctgcgcaaatagtggtgataccgttgacgctgttgttccatatatgggtgaatccattagtgatgggacactggccaagttcctgaagaatgttggtgacagagtagaagttgatgagccaattgctcagattgaaacagataaggtaaccattgatgttaccagtcctgaagctggtgtaatccaaaagtttatagccaaggaaggggacactgtcgaaccaggcaataaagttgctatcatttcaaaatctggtgagggtgtggaacatgttgctccatctgagaagtcctctgagaaagtagctcctgcagctgaggataagaaagaggaaaaggcaaaacctcaagttgagacaactcccgtcaaggagaagcctaagggaagttcacctccaccccctaaacgctctactacagagctccaacttcctcccaaagaacgggaaagacgagttcccatgaccaggctcagaaaaagagttgccacacgtttgaaagattctcagaacacatttgctttgctgacaacattcaatgaagttgatatgacaaatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="7982" stop="10559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8282" g_stop="8315" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984">
            <donor d_prob="0.918" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9300" g_stop="9374" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="109" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9375" i_stop="9475" i_length="101">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9476" g_stop="9531" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="165" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9532" i_stop="9627" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9628" g_stop="9672" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="210" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9673" i_stop="9783" i_length="111">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9784" g_stop="10047" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="474" r_length="264" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10048" i_stop="10153" i_length="106">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10154" g_stop="10248" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="569" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="10249" i_stop="10522" i_length="274">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10523" g_stop="10534" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="581" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E272711" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8282" e_stop="8315"/>
          <exon e_start="9300" e_stop="9374"/>
          <exon e_start="9476" e_stop="9531"/>
          <exon e_start="9628" e_stop="9672"/>
          <exon e_start="9784" e_stop="10047"/>
          <exon e_start="10154" e_stop="10248"/>
          <exon e_start="10523" e_stop="10534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTGGTATATTTTTCTAATAATTTATCAAGCTTGCCTGGAACGCTGATGCAAATGAAATTAGTCACGACATGCTTACACTGTATATAGTATTGTTCAAAAATGTAATCTGGTCTCTTGGTATTGTTCCTGCAGTTCATCATGGTCCCAACTACCATCACATGTATTCTTTAGTACCTTTGAACTTATAAATTATCAGTTAGATACTCCTATGTCAGTTGTACCTTCTCTTCTAAATAATTATTATCTTCACATACTTTATTGAAGTTACCCTTTCTTTTCATCTTTTTTGGGATTGCGGTCTTATATGGAATTATATTATAGATACTTAAAAATGTGACATGTATCTTTTGATTGCCTATTATTGTACCAAATGATTGGCTGTTAGTTCTGGTCATTTGCAAATTTCTGTTTGGACGTGGAAGAAGTATTTGCGTTATCTACCTGGAGGATATAACTAGTTAACTCAATTTTAAAAAAATATAGCTAGTTAGCAGTTTCAACTCCGTATAAAGTTCTGTATCATCTATTGGATCGGGACTGCCATTATCATCAACATCGATGCCATCAAGAAGGGCCTGTCTATCATCTTCACCGCATAGGAACTACTTGATCACTCCAATGTTGCCTTCGCATCCTAGGGTTACATATGTCAATATGACTCTTTTCAATAAGTGGAAATCATTATCTTTAAAAGAATTTATGATAAGATGCTAGTTCAATTAGTTTAATGACCCTATCTTAAAGCTTCGCATCTGGTGGAGTAGAAGAAATTTAGAATTAGTTGGAAATTAGCACTCTTGTTTACAGTTAAAGAATGTTGGAATTCTAAATGTATCATGCAATAATGTATTGACAGCTTCCATATATATTTTAATTGTTATTTCATTTGCTTTCTCCTTTTCTCTGTCATCCCTTTTCCCTTATTCTGTATTGCTACAGTTCCTCACTTTTTTTTCTTTTATTTGCGTGTCTATAATTGTAATGTAGGTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGAGTATGTCTTTATTGATGTGGTCTCTGATCCATCTTATATGCAGTAGTATTCATAGTCACTCTGTACTTACTGTTTTTTCATGTTTCCTTCTATATGAGCAGATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAGGTACCCTGTTTCTAATATTAGTTAATTTTAATCACATTATCTCAGGTCTGTCTGGAGATTAATGACACTTATATATGAATGGTTTTTATTGGACAGGTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAGGTAGAACATCTTTGGCACTGGAGCTCTGCGTTGCTCAACCTCCCACCACCTAGTTTATTACATTTTATTTTTTGATCAACAACTTCTGAATCTGGTTTTGAATATCTATAGTTTATAGCCAAGGAAGGGGACACTGTCGAACCAGGCAATAAAGTTGCTATCATTTCAAAATCTGGTGAGGGTGTGGAACATGTTGCTCCATCTGAGAAGTCCTCTGAGAAAGTAGCTCCTGCAGCTGAGGATAAGAAAGAGGAAAAGGCAAAACCTCAAGTTGAGACAACTCCCGTCAAGGAGAAGCCTAAGGGAAGTTCACCTCCACCCCCTAAACGCTCTCCTACAGAGCTCCAACTTCCTCCCAAAGAACGGGAAAGACGAGTGAGTCAATAGCTAATGTTGTTGTAATCTCATTGTCATGGCACTACTCATTTATGTAACTTGGCACTTACTGTGTGTTATCTTCTATAATCTGTTTTGATGACAGGTTCCCATGACCAGGCTCAGAAAAAGAGTTGCCACACGTTTGAAAGATTCTCAGAACACATTTGCTTTGCTGACAACATTCAATGAAGTTGATATGTAAGTTTGGACTTTGATTTTGAATAAGACACTATTTTTTTGTGCTAATATTTCTGCACCTTATCCTAAGTATAGAGAAACAGAAAATTTTGATCTAGGAATTGAAGGTTATAAACTTCAGTTACCTTTTCCAATTTATTTTCCTAGATGCAGATTGGTCTCTGTTGTGACCTAGGAGGGGTGTGGGCATTGATCAGATGTGATGTAGTAGTATTTGTTTTGCATCTTTGTTGACCTTATGTTGTATCTCTTTCTTCATTGTTGTTCTATTCAGGACAAATTTGAT</genome_strand>
        <mrna_strand>TCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGA.....................................................................................................ATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAG................................................................................................GTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAG...............................................................................................................TTTATAGCCAAGGAAGGGGACACTGTCGAACCAGGCAATAAAGTTGCTATCATTTCAAAATCTGGTGAGGGTGTGGAACATGTTGCTCCATCTGAGAAGTCCTCTGAGAAAGTAGCTCCTGCAGCTGAGGATAAGAAAGAGGAAAAGGCAAAACCTCAAGTTGAGACAACTCCCGTCAAGGAGAAGCCTAAGGGAAGTTCACCTCCACCCCCTAAACGCTCTACTACAGAGCTCCAACTTCCTCCCAAAGAACGGGAAAGACGA..........................................................................................................GTTCCCATGACCAGGCTCAGAAAAAGAGTTGCCACACGTTTGAAAGATTCTCAGAACACATTTGCTTTGCTGACAACATTCAATGAAGTTGATAT..................................................................................................................................................................................................................................................................................GACAAATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275398" ref_strand="+" ref_description="SGN-E275398 [cLEN-10-B13]">
      <seq>agataaggtaaccattgatgttaccagtcctgaagctggtgtaatccacaagtttataaccaaggaaggggacactgtcgaaccacgcaataaagttgctatcatttcaaaatctggtgagggtgtggaacatgttgctccatctgagaaggactcttagaaaatagctcctgccgctgaggattataaagaggaaaaggcaaaacctcaagttgcgacaactcccgtcaaggagaagtctaagggaagttcacctccaccccctaaacgctctcttacagagctccaacttcctcccaaagaacgggaaagacgagttcccatgaccaggctcagaaaaagagttgtcacacgtttgaaagattgtcagaacacatttgctttgctgacaacattcaatgaagttgatatgacaaatttgatgaagctccgctctgattacaaagatgccttttttgaaaagcatggagtcaagttaggattcatgtctggatttgtgaaagcagcagatagcgcactccataatcagccaattgttaatgctgttatcgatggtgatgacatcatatatagggattatatacacatcagtatcgctgttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="9326" stop="11094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9525" g_stop="9531" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9532" i_stop="9627" i_length="96">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9628" g_stop="9672" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="52" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9673" i_stop="9783" i_length="111">
            <donor d_prob="0.610" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9784" g_stop="10047" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="316" r_length="264" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10048" i_stop="10153" i_length="106">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10154" g_stop="10248" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="411" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10249" i_stop="10522" i_length="274">
            <donor d_prob="0.966" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10523" g_stop="10613" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="502" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10614" i_stop="10692" i_length="79">
            <donor d_prob="0.819" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10693" g_stop="10794" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="604" r_length="102" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E275398" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9525" e_stop="9531"/>
          <exon e_start="9628" e_stop="9672"/>
          <exon e_start="9784" e_stop="10047"/>
          <exon e_start="10154" e_stop="10248"/>
          <exon e_start="10523" e_stop="10613"/>
          <exon e_start="10693" e_stop="10794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAAGGTACCCTGTTTCTAATATTAGTTAATTTTAATCACATTATCTCAGGTCTGTCTGGAGATTAATGACACTTATATATGAATGGTTTTTATTGGACAGGTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAGGTAGAACATCTTTGGCACTGGAGCTCTGCGTTGCTCAACCTCCCACCACCTAGTTTATTACATTTTATTTTTTGATCAACAACTTCTGAATCTGGTTTTGAATATCTATAGTTTATAGCCAAGGAAGGGGACACTGTCGAACCAGGCAATAAAGTTGCTATCATTTCAAAATCTGGTGAGGGTGTGGAACATGTTGCTCCATCTGAGAAGTCCTCTGAGAAAGTAGCTCCTGCAGCTGAGGATAAGAAAGAGGAAAAGGCAAAACCTCAAGTTGAGACAACTCCCGTCAAGGAGAAGCCTAAGGGAAGTTCACCTCCACCCCCTAAACGCTCTCCTACAGAGCTCCAACTTCCTCCCAAAGAACGGGAAAGACGAGTGAGTCAATAGCTAATGTTGTTGTAATCTCATTGTCATGGCACTACTCATTTATGTAACTTGGCACTTACTGTGTGTTATCTTCTATAATCTGTTTTGATGACAGGTTCCCATGACCAGGCTCAGAAAAAGAGTTGCCACACGTTTGAAAGATTCTCAGAACACATTTGCTTTGCTGACAACATTCAATGAAGTTGATATGTAAGTTTGGACTTTGATTTTGAATAAGACACTATTTTTTTGTGCTAATATTTCTGCACCTTATCCTAAGTATAGAGAAACAGAAAATTTTGATCTAGGAATTGAAGGTTATAAACTTCAGTTACCTTTTCCAATTTATTTTCCTAGATGCAGATTGGTCTCTGTTGTGACCTAGGAGGGGTGTGGGCATTGATCAGATGTGATGTAGTAGTATTTGTTTTGCATCTTTGTTGACCTTATGTTGTATCTCTTTCTTCATTGTTGTTCTATTCAGGACAAATTTGATGAAGCTCCGTTCTGATTACAAAGATGCCTTTTTTGAAAAGCATGGAGTCAAGTTAGGATTCATGTCTGGATTTGTGAAAGTATGATGAGGACTAATTTCTGTTTGTTTTTGTATCTTCATTGTAAAATTCTGGCCTAAAATGCTTATATAAATTTCAGGCAGCAGTTAGCGCACTCCAGAATCAGCCAATTGTTAATGCTGTTATCGATGGTGATGACATCATATATAGGGATTATATAGACATCAGTATCGCTGTTGGT</genome_strand>
        <mrna_strand>AGATAAG................................................................................................GTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCACAAG...............................................................................................................TTTATAACCAAGGAAGGGGACACTGTCGAACCACGCAATAAAGTTGCTATCATTTCAAAATCTGGTGAGGGTGTGGAACATGTTGCTCCATCTGAGAAGGACTCTTAGAAAATAGCTCCTGCCGCTGAGGATTATAAAGAGGAAAAGGCAAAACCTCAAGTTGCGACAACTCCCGTCAAGGAGAAGTCTAAGGGAAGTTCACCTCCACCCCCTAAACGCTCTCTTACAGAGCTCCAACTTCCTCCCAAAGAACGGGAAAGACGA..........................................................................................................GTTCCCATGACCAGGCTCAGAAAAAGAGTTGTCACACGTTTGAAAGATTGTCAGAACACATTTGCTTTGCTGACAACATTCAATGAAGTTGATAT..................................................................................................................................................................................................................................................................................GACAAATTTGATGAAGCTCCGCTCTGATTACAAAGATGCCTTTTTTGAAAAGCATGGAGTCAAGTTAGGATTCATGTCTGGATTTGTGAAA...............................................................................GCAGCAGATAGCGCACTCCATAATCAGCCAATTGTTAATGCTGTTATCGATGGTGATGACATCATATATAGGGATTATATACACATCAGTATCGCTGTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210085" ref_strand="+" ref_description="SGN-E210085 [cLEC-40-I20]">
      <seq>aatccaaaagtttatagccaaggaaggggacactgtcgaaccaggcaataaagttgctatcatttcaaaatctggtgagggtgtggaacatgttgctccatctgagaagtcctctgagaaagtagctcctgcagctgaggataagaaagaggaaaaggcaaaacctcaagttgagacaactcccgtcaaggagaagcctaagggaagttcacctccaccccctaaacgctctcctacagagctccaacttcctcccaaagaacgggaaagacgagttcccatgaccaggctcagaaaaagagttgccacacgtttgaaagattctcagaacacatttgctttgctgacaacattcaatgaagttgatatgacaaatttgatgaagctccgttctgattacaaagatgccttttttgaaaagcatggagtcaagttaggattcatgtctggatttgtgaaagcagcagttagcgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="9476" stop="10927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9663" g_stop="9672" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9673" i_stop="9783" i_length="111">
            <donor d_prob="0.610" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9784" g_stop="10047" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="274" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10048" i_stop="10153" i_length="106">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10154" g_stop="10248" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="369" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10249" i_stop="10522" i_length="274">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10523" g_stop="10613" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="460" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10614" i_stop="10692" i_length="79">
            <donor d_prob="0.819" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10693" g_stop="10709" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="477" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E210085" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9663" e_stop="9672"/>
          <exon e_start="9784" e_stop="10047"/>
          <exon e_start="10154" e_stop="10248"/>
          <exon e_start="10523" e_stop="10613"/>
          <exon e_start="10693" e_stop="10709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCAAAAGGTAGAACATCTTTGGCACTGGAGCTCTGCGTTGCTCAACCTCCCACCACCTAGTTTATTACATTTTATTTTTTGATCAACAACTTCTGAATCTGGTTTTGAATATCTATAGTTTATAGCCAAGGAAGGGGACACTGTCGAACCAGGCAATAAAGTTGCTATCATTTCAAAATCTGGTGAGGGTGTGGAACATGTTGCTCCATCTGAGAAGTCCTCTGAGAAAGTAGCTCCTGCAGCTGAGGATAAGAAAGAGGAAAAGGCAAAACCTCAAGTTGAGACAACTCCCGTCAAGGAGAAGCCTAAGGGAAGTTCACCTCCACCCCCTAAACGCTCTCCTACAGAGCTCCAACTTCCTCCCAAAGAACGGGAAAGACGAGTGAGTCAATAGCTAATGTTGTTGTAATCTCATTGTCATGGCACTACTCATTTATGTAACTTGGCACTTACTGTGTGTTATCTTCTATAATCTGTTTTGATGACAGGTTCCCATGACCAGGCTCAGAAAAAGAGTTGCCACACGTTTGAAAGATTCTCAGAACACATTTGCTTTGCTGACAACATTCAATGAAGTTGATATGTAAGTTTGGACTTTGATTTTGAATAAGACACTATTTTTTTGTGCTAATATTTCTGCACCTTATCCTAAGTATAGAGAAACAGAAAATTTTGATCTAGGAATTGAAGGTTATAAACTTCAGTTACCTTTTCCAATTTATTTTCCTAGATGCAGATTGGTCTCTGTTGTGACCTAGGAGGGGTGTGGGCATTGATCAGATGTGATGTAGTAGTATTTGTTTTGCATCTTTGTTGACCTTATGTTGTATCTCTTTCTTCATTGTTGTTCTATTCAGGACAAATTTGATGAAGCTCCGTTCTGATTACAAAGATGCCTTTTTTGAAAAGCATGGAGTCAAGTTAGGATTCATGTCTGGATTTGTGAAAGTATGATGAGGACTAATTTCTGTTTGTTTTTGTATCTTCATTGTAAAATTCTGGCCTAAAATGCTTATATAAATTTCAGGCAGCAGTTAGCGCACT</genome_strand>
        <mrna_strand>AATCCAAAAG...............................................................................................................TTTATAGCCAAGGAAGGGGACACTGTCGAACCAGGCAATAAAGTTGCTATCATTTCAAAATCTGGTGAGGGTGTGGAACATGTTGCTCCATCTGAGAAGTCCTCTGAGAAAGTAGCTCCTGCAGCTGAGGATAAGAAAGAGGAAAAGGCAAAACCTCAAGTTGAGACAACTCCCGTCAAGGAGAAGCCTAAGGGAAGTTCACCTCCACCCCCTAAACGCTCTCCTACAGAGCTCCAACTTCCTCCCAAAGAACGGGAAAGACGA..........................................................................................................GTTCCCATGACCAGGCTCAGAAAAAGAGTTGCCACACGTTTGAAAGATTCTCAGAACACATTTGCTTTGCTGACAACATTCAATGAAGTTGATAT..................................................................................................................................................................................................................................................................................GACAAATTTGATGAAGCTCCGTTCTGATTACAAAGATGCCTTTTTTGAAAAGCATGGAGTCAAGTTAGGATTCATGTCTGGATTTGTGAAA...............................................................................GCAGCAGTTAGCGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699185" ref_strand="+" ref_description="SGN-E699185 [FA09AA03]">
      <seq>cccattagagttgccacacgtttgaaagattctcagaacacatttgctttgctgacaacattcaatgaagttgatatgacaaatttgatgaagctccgttctgattacaaagatgccttttttgaaaagcatggagtcaagttaggattcatgtctggatttgtgaaagcagcagttagcgcactccagaatcagccaattgttaatgctgttatcgatggtgatgacatcatatatagggattatatagacatcagtatcgctgttggtacaccaaagggtcttgttgttccagttatccgcaacgctgagcagatgaattttgctgagatagaaaagacaattaactcacttgctaagaaggcaaatgatggaagcatatctattgatgaaatggctggagggtcattcaccatttcaaacggtggagtgtatggaagtcttatcagtacccctatcattaatcctccccagtctgctatcttgggaatgcattcaatagtcagtcgtcctatggtcgttggaggcaatattgttccaagaccaatgatgtacattgctctgacatacgatcacaggctgatcgatggaagagaggcagtcttcttcttgagaagaatcaaggatgtggttgaagatccccgtcgcttgctccttgatgtttgaagatgaaccacatcatctggcttttgattttgatccgtccgtgggtatacctgagtgtacaactcaatcatagaaccagaataaatggcaatatcagagttttgttggcctgaggtgttgctttggtcctctgattattgcagccacagctatatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="9878" stop="11948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10172" g_stop="10248" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10249" i_stop="10522" i_length="274">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10523" g_stop="10613" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="168" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10614" i_stop="10692" i_length="79">
            <donor d_prob="0.819" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10693" g_stop="10803" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="279" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10804" i_stop="11019" i_length="216">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11020" g_stop="11214" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="474" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11215" i_stop="11297" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11298" g_stop="11648" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="825" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E699185" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10172" e_stop="10248"/>
          <exon e_start="10523" e_stop="10613"/>
          <exon e_start="10693" e_stop="10803"/>
          <exon e_start="11020" e_stop="11214"/>
          <exon e_start="11298" e_stop="11648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAGAGTTGCCACACGTTTGAAAGATTCTCAGAACACATTTGCTTTGCTGACAACATTCAATGAAGTTGATATGTAAGTTTGGACTTTGATTTTGAATAAGACACTATTTTTTTGTGCTAATATTTCTGCACCTTATCCTAAGTATAGAGAAACAGAAAATTTTGATCTAGGAATTGAAGGTTATAAACTTCAGTTACCTTTTCCAATTTATTTTCCTAGATGCAGATTGGTCTCTGTTGTGACCTAGGAGGGGTGTGGGCATTGATCAGATGTGATGTAGTAGTATTTGTTTTGCATCTTTGTTGACCTTATGTTGTATCTCTTTCTTCATTGTTGTTCTATTCAGGACAAATTTGATGAAGCTCCGTTCTGATTACAAAGATGCCTTTTTTGAAAAGCATGGAGTCAAGTTAGGATTCATGTCTGGATTTGTGAAAGTATGATGAGGACTAATTTCTGTTTGTTTTTGTATCTTCATTGTAAAATTCTGGCCTAAAATGCTTATATAAATTTCAGGCAGCAGTTAGCGCACTCCAGAATCAGCCAATTGTTAATGCTGTTATCGATGGTGATGACATCATATATAGGGATTATATAGACATCAGTATCGCTGTTGGTACACCAAAGGCAAGCTAGCTCTTTCTTTGCTTCAAAGTTTCATATTACATGGGCTTGTCTTGCATAATTCCTAATCTGTCTCAATTTGTCCTTCAAACTCTCTTTTATATGGACTCTACTTGTTGAGTTTTTGGCAGTGTTTTTATAGACGTTTAGAGTGAAATGAGAACTGCAAGAGAGAGACTTTAGGGATGATATTAAGTATCCTTTTTTCTCCTTGCTCAGGGTCTTGTTGTTCCAGTTATCCGCAACGCTGAGCAGATGAATTTTGCTGAGATAGAAAAGACAATTAACTCACTTGCTAAGAAGGCAAATGATGGAAGCATATCTATTGATGAAATGGCTGGAGGGTCATTCACCATTTCAAACGGTGGAGTGTATGGAAGTCTTATCAGTACCCCTATCATTAATCCTCCCCAGGTATGTATCGTAGGAAGAGATTGCAATTACCTTGTAGTTGTAGAGCTATCTCACCGTCAAAAATTTGCTGCTTGATTTTGTAGTCTGCTATCTTGGGAATGCATTCAATAGTCAGTCGTCCTATGGTCGTTGGAGGCAATATTGTTCCAAGACCAATGATGTACATTGCTCTGACATACGATCACAGGCTGATCGATGGAAGAGAGGCAGTCTTCTTCTTGAGAAGAATCAAGGATGTGGTTGAAGATCCCCGTCGCTTGCTCCTTGATGTTTGAAGATGAACCACATCATCTGGCTTTTGATTTTGATCCGTCCGTGGGTATACCTGAGTGTACAACTCAATCATAGAACCAGAATAAATGGCAATATCAGAGTTTTGTTGGCCTGAGGTGTTGCTTTGGTCCTCTGATTATTGCAGCCACAGCTATATTTGA</genome_strand>
        <mrna_strand>CCCATTAGAGTTGCCACACGTTTGAAAGATTCTCAGAACACATTTGCTTTGCTGACAACATTCAATGAAGTTGATAT..................................................................................................................................................................................................................................................................................GACAAATTTGATGAAGCTCCGTTCTGATTACAAAGATGCCTTTTTTGAAAAGCATGGAGTCAAGTTAGGATTCATGTCTGGATTTGTGAAA...............................................................................GCAGCAGTTAGCGCACTCCAGAATCAGCCAATTGTTAATGCTGTTATCGATGGTGATGACATCATATATAGGGATTATATAGACATCAGTATCGCTGTTGGTACACCAAAG........................................................................................................................................................................................................................GGTCTTGTTGTTCCAGTTATCCGCAACGCTGAGCAGATGAATTTTGCTGAGATAGAAAAGACAATTAACTCACTTGCTAAGAAGGCAAATGATGGAAGCATATCTATTGATGAAATGGCTGGAGGGTCATTCACCATTTCAAACGGTGGAGTGTATGGAAGTCTTATCAGTACCCCTATCATTAATCCTCCCCAG...................................................................................TCTGCTATCTTGGGAATGCATTCAATAGTCAGTCGTCCTATGGTCGTTGGAGGCAATATTGTTCCAAGACCAATGATGTACATTGCTCTGACATACGATCACAGGCTGATCGATGGAAGAGAGGCAGTCTTCTTCTTGAGAAGAATCAAGGATGTGGTTGAAGATCCCCGTCGCTTGCTCCTTGATGTTTGAAGATGAACCACATCATCTGGCTTTTGATTTTGATCCGTCCGTGGGTATACCTGAGTGTACAACTCAATCATAGAACCAGAATAAATGGCAATATCAGAGTTTTGTTGGCCTGAGGTGTTGCTTTGGTCCTCTGATTATTGCAGCCACAGCTATATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355384" ref_strand="-" ref_description="SGN-E355384 [cTOS-25-I17]">
      <seq>gacaattaactcacttgctaagaaggcaaatgatggaagcatatctattgatgaaatggctggagggtcattcaccatttcaaacggtggagtgtatggaagtcttatcagtacccctatcattaatcctccccagtctgctatcttgggaatgcattcaatagtcagtcgtcctatggtcgttggaggcaatattgttccaagaccaatgatgtacattgctctgacatacgatcacaggctgatcgatggaagagaggcagtcttcttcttgagaagaatcaaggatgtggttgaagatccccgtcgcttgctccttgatgtttgaagatgaaccacatcatctggcttttgattttgatccgtccgtgggtatacctgagtgtacaactcaatcatagaaccagaataaatggcaatatcagagttttgttggcctgaggtgttgctttggtcctctgattattgcagccacagctatatttgagattcgcagatagaaccctaaagaatttacggtccttcccatttacccttttgcacaactatattttactttgcatgaatatttatttctcgtttcaaaatattaaaaccaacctgaactttctttgaattgggacacacttgcattagcctattggctatagtattttcttctgtattggagaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="10779" stop="12133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11079" g_stop="11214" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11215" i_stop="11297" i_length="83">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11298" g_stop="11832" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="671" r_length="535" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="672" polyA_stop="689"/>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E355384" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355384" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11079" e_stop="11214"/>
          <exon e_start="11298" e_stop="11832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATTAACTCACTTGCTAAGAAGGCAAATGATGGAAGCATATCTATTGATGAAATGGCTGGAGGGTCATTCACCATTTCAAACGGTGGAGTGTATGGAAGTCTTATCAGTACCCCTATCATTAATCCTCCCCAGGTATGTATCGTAGGAAGAGATTGCAATTACCTTGTAGTTGTAGAGCTATCTCACCGTCAAAAATTTGCTGCTTGATTTTGTAGTCTGCTATCTTGGGAATGCATTCAATAGTCAGTCGTCCTATGGTCGTTGGAGGCAATATTGTTCCAAGACCAATGATGTACATTGCTCTGACATACGATCACAGGCTGATCGATGGAAGAGAGGCAGTCTTCTTCTTGAGAAGAATCAAGGATGTGGTTGAAGATCCCCGTCGCTTGCTCCTTGATGTTTGAAGATGAACCACATCATCTGGCTTTTGATTTTGATCCGTCCGTGGGTATACCTGAGTGTACAACTCAATCATAGAACCAGAATAAATGGCAATATCAGAGTTTTGTTGGCCTGAGGTGTTGCTTTGGTCCTCTGATTATTGCAGCCACAGCTATATTTGAGATTCGCAGATAGAACCCTAAAGAATTTACGGTCCTTCCCATTTACCCTTTTGCACAACTATATTTTACTTTGCATGAATATTTATTTCTCGTTTCAAAATATTAAAACCAACCTGAACTTTCTTTGAATTGGGACACACTTGCATTAGCCTATTGGCTATAGTATTTTCTTCTGTATTGGAGA</genome_strand>
        <mrna_strand>GACAATTAACTCACTTGCTAAGAAGGCAAATGATGGAAGCATATCTATTGATGAAATGGCTGGAGGGTCATTCACCATTTCAAACGGTGGAGTGTATGGAAGTCTTATCAGTACCCCTATCATTAATCCTCCCCAG...................................................................................TCTGCTATCTTGGGAATGCATTCAATAGTCAGTCGTCCTATGGTCGTTGGAGGCAATATTGTTCCAAGACCAATGATGTACATTGCTCTGACATACGATCACAGGCTGATCGATGGAAGAGAGGCAGTCTTCTTCTTGAGAAGAATCAAGGATGTGGTTGAAGATCCCCGTCGCTTGCTCCTTGATGTTTGAAGATGAACCACATCATCTGGCTTTTGATTTTGATCCGTCCGTGGGTATACCTGAGTGTACAACTCAATCATAGAACCAGAATAAATGGCAATATCAGAGTTTTGTTGGCCTGAGGTGTTGCTTTGGTCCTCTGATTATTGCAGCCACAGCTATATTTGAGATTCGCAGATAGAACCCTAAAGAATTTACGGTCCTTCCCATTTACCCTTTTGCACAACTATATTTTACTTTGCATGAATATTTATTTCTCGTTTCAAAATATTAAAACCAACCTGAACTTTCTTTGAATTGGGACACACTTGCATTAGCCTATTGGCTATAGTATTTTCTTCTGTATTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366209" ref_strand="+" ref_description="SGN-E366209 [cLPT-1-M11](-)">
      <seq>tagtcagtcgtcctatggtcgttggaggcaatattgttccaagaccaatgatgtacattgctctgacatacgatcataggctgatcgatggaagagaggcagtcttcttcttgagaagaattaaggatgtggttgaagatccccgtcgcttgctccttgatgtttgaagatgaacaacatcatctggcttttgattttgatccgtccgtgggtatacctgagtgtacaactcaatcatagaaccagaataaatggcaatatcagagttttgttggcctgaggtgttgctttggtcctctgattattgcagccacagctatatttgagatttgcagatagaaccataaagaatttacgatccttcccatttacccttttgcacaactatattttactttgcatgaatatttatctctcgtttcaaaatattaaaccaacctgaactttctttgaattgggacacacttgcattagcctattggctatagtattttcttctgtattggagagttcatacacgtttgaatattcaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="11023" stop="12158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11323" g_stop="11862" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E366209" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11323" e_stop="11862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCAGTCGTCCTATGGTCGTTGGAGGCAATATTGTTCCAAGACCAATGATGTACATTGCTCTGACATACGATCACAGGCTGATCGATGGAAGAGAGGCAGTCTTCTTCTTGAGAAGAATCAAGGATGTGGTTGAAGATCCCCGTCGCTTGCTCCTTGATGTTTGAAGATGAACCACATCATCTGGCTTTTGATTTTGATCCGTCCGTGGGTATACCTGAGTGTACAACTCAATCATAGAACCAGAATAAATGGCAATATCAGAGTTTTGTTGGCCTGAGGTGTTGCTTTGGTCCTCTGATTATTGCAGCCACAGCTATATTTGAGATTCGCAGATAGAACCCTAAAGAATTTACGGTCCTTCCCATTTACCCTTTTGCACAACTATATTTTACTTTGCATGAATATTTATTTCTCGTTTCAAAATATTAAAACCAACCTGAACTTTCTTTGAATTGGGACACACTTGCATTAGCCTATTGGCTATAGTATTTTCTTCTGTATTGGAGAATTCATACACGTTTGAATATTCATAATGTT</genome_strand>
        <mrna_strand>TAGTCAGTCGTCCTATGGTCGTTGGAGGCAATATTGTTCCAAGACCAATGATGTACATTGCTCTGACATACGATCATAGGCTGATCGATGGAAGAGAGGCAGTCTTCTTCTTGAGAAGAATTAAGGATGTGGTTGAAGATCCCCGTCGCTTGCTCCTTGATGTTTGAAGATGAACAACATCATCTGGCTTTTGATTTTGATCCGTCCGTGGGTATACCTGAGTGTACAACTCAATCATAGAACCAGAATAAATGGCAATATCAGAGTTTTGTTGGCCTGAGGTGTTGCTTTGGTCCTCTGATTATTGCAGCCACAGCTATATTTGAGATTTGCAGATAGAACCATAAAGAATTTACGATCCTTCCCATTTACCCTTTTGCACAACTATATTTTACTTTGCATGAATATTTATCTCTCGTTTCAAAATATT-AAACCAACCTGAACTTTCTTTGAATTGGGACACACTTGCATTAGCCTATTGGCTATAGTATTTTCTTCTGTATTGGAGAGTTCATACACGTTTGAATATTCAAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311044" ref_strand="+" ref_description="SGN-E311044 [cLEZ-17-N3]">
      <seq>tcaatgatgttcattgctctgacatacgatcacaggctgatcgatggaagagaggcagtcttcttcttgagaagaatcaaggatgtggttgaagatccccgtcgcttgctccttgatgtttgaagatgaaccacatcatctggcttttgattttgatccgtccgtgggtatacctgagtgtacaactcaatcatagaaccagaataaatggcaatatcagagttttgttggcctgaggtgttgctttggtcctctgattattgcagccacagctatatttgagattcgcagatagaaccctaaagaatttacggtccttcccatttacccttttgcacaactatattttactttgcatgaatatttatttctcgtttcaaaatattaaaaccaacctgaactttctttgaattgggacacacttgcattagcctattggctatagtattttcttctgtattggagaattcatacacgtttgaatattcataatgttggtcccagtattttaattttgatttaaattgttatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="11068" stop="12199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11367" g_stop="11899" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E311044" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11367" e_stop="11899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATGATGTACATTGCTCTGACATACGATCACAGGCTGATCGATGGAAGAGAGGCAGTCTTCTTCTTGAGAAGAATCAAGGATGTGGTTGAAGATCCCCGTCGCTTGCTCCTTGATGTTTGAAGATGAACCACATCATCTGGCTTTTGATTTTGATCCGTCCGTGGGTATACCTGAGTGTACAACTCAATCATAGAACCAGAATAAATGGCAATATCAGAGTTTTGTTGGCCTGAGGTGTTGCTTTGGTCCTCTGATTATTGCAGCCACAGCTATATTTGAGATTCGCAGATAGAACCCTAAAGAATTTACGGTCCTTCCCATTTACCCTTTTGCACAACTATATTTTACTTTGCATGAATATTTATTTCTCGTTTCAAAATATTAAAACCAACCTGAACTTTCTTTGAATTGGGACACACTTGCATTAGCCTATTGGCTATAGTATTTTCTTCTGTATTGGAGAATTCATACACGTTTGAATATTCATAATGTTGGTCCCAGTATTTTAATTTTGATTTAAATTGTTATCA</genome_strand>
        <mrna_strand>TCAATGATGTTCATTGCTCTGACATACGATCACAGGCTGATCGATGGAAGAGAGGCAGTCTTCTTCTTGAGAAGAATCAAGGATGTGGTTGAAGATCCCCGTCGCTTGCTCCTTGATGTTTGAAGATGAACCACATCATCTGGCTTTTGATTTTGATCCGTCCGTGGGTATACCTGAGTGTACAACTCAATCATAGAACCAGAATAAATGGCAATATCAGAGTTTTGTTGGCCTGAGGTGTTGCTTTGGTCCTCTGATTATTGCAGCCACAGCTATATTTGAGATTCGCAGATAGAACCCTAAAGAATTTACGGTCCTTCCCATTTACCCTTTTGCACAACTATATTTTACTTTGCATGAATATTTATTTCTCGTTTCAAAATATTAAAACCAACCTGAACTTTCTTTGAATTGGGACACACTTGCATTAGCCTATTGGCTATAGTATTTTCTTCTGTATTGGAGAATTCATACACGTTTGAATATTCATAATGTTGGTCCCAGTATTTTAATTTTGATTTAAATTGTTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200384" ref_strand="+" ref_description="SGN-E200384 [cLEC-1-E9](-)">
      <seq>aaccacatcatctggcttttgattttgatccgtccgtgggtatacctgagtgtacaactcaatcatagaaccagaataaatggcaatatcagagttttgttggcctgaggtgttgctttggtcctctgattattgcagccccagctatatttgagattcgcagatagaaccctaaagaatttacggtccttcccatttacccttttgcacaactatattttactttgcatgaatatttatttctcgtttcaaaatattaaaaccaacctgaactttctttgaattgggacacacttgcattagcctattggctatagtattttcaactgtattggagaattcatacaagtatgaatattcataatgttggtcaaagtattttaattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="11195" stop="12183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11495" g_stop="11883" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E200384" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11495" e_stop="11883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCACATCATCTGGCTTTTGATTTTGATCCGTCCGTGGGTATACCTGAGTGTACAACTCAATCATAGAACCAGAATAAATGGCAATATCAGAGTTTTGTTGGCCTGAGGTGTTGCTTTGGTCCTCTGATTATTGCAGCCACAGCTATATTTGAGATTCGCAGATAGAACCCTAAAGAATTTACGGTCCTTCCCATTTACCCTTTTGCACAACTATATTTTACTTTGCATGAATATTTATTTCTCGTTTCAAAATATTAAAACCAACCTGAACTTTCTTTGAATTGGGACACACTTGCATTAGCCTATTGGCTATAGTATTTTCTTCTGTATTGGAGAATTCATACACGTTTGAATATTCATAATGTTGGTCCCAGTATTTTAATTTTG</genome_strand>
        <mrna_strand>AACCACATCATCTGGCTTTTGATTTTGATCCGTCCGTGGGTATACCTGAGTGTACAACTCAATCATAGAACCAGAATAAATGGCAATATCAGAGTTTTGTTGGCCTGAGGTGTTGCTTTGGTCCTCTGATTATTGCAGCCCCAGCTATATTTGAGATTCGCAGATAGAACCCTAAAGAATTTACGGTCCTTCCCATTTACCCTTTTGCACAACTATATTTTACTTTGCATGAATATTTATTTCTCGTTTCAAAATATTAAAACCAACCTGAACTTTCTTTGAATTGGGACACACTTGCATTAGCCTATTGGCTATAGTATTTTCAACTGTATTGGAGAATTCATACAAGTATGAATATTCATAATGTTGGTCAAAGTATTTTAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546558" ref_strand="+" ref_description="SGN-E546558 [TUS-69-P19](-)">
      <seq>acgtaaaggaccccaaggccgtggattcagggactgtgaaagtgcgaaacccaggtccaaatggagaagaatatgcatggtaccagtgcacggtgagtggtgggagagaaggccgccctattggagcttatgagcttgcgaaagctgttgaggaattaggagctggggagatactgctgaactgcattgattgtgatggtcaaggaaagggatttgatatagacctaattaagttggtttcagatgctgtaagcattcctgtgattgcaagcagtggagctggagctgttgaacactttacagaggtcttcagagaaacaaatgcttctgctgcccttgctgctggaattttccatagaaaggaggttcccattcaagccgtgaaagagcatctgtcagaggaaggcatagaggttagaatgtaaccacatttttgctatcgagcaactcgatatgcagtcctatcctttgcaactccttgttacttgatgtttatatcactgaatatcagtttcttttatcttgttgctgcgaatgaagcctttttcaatatcttgcacttatagcctcgtgccaattttgagcaagttatcattgtaaaatttgtattgttaaattatttgtgtacactttcttcagtatatgagttattagttggacatgtcttggggtattagttcttgagtgtcatcgtcaatgatgaantatacattttgttgaacaaagttcacaaatttctttgctgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="16408" stop="13301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16108" g_stop="16055" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16054" i_stop="15886" i_length="169">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15885" g_stop="15848" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="92" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15847" i_stop="15696" i_length="152">
            <donor d_prob="0.843" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15695" g_stop="15590" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="198" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15589" i_stop="14840" i_length="750">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14839" g_stop="14673" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="365" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14672" i_stop="13982" i_length="691">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13981" g_stop="13604" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="745" r_length="380" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="746" polyA_stop="755"/>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E546558" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16108" e_stop="16055"/>
          <exon e_start="15885" e_stop="15848"/>
          <exon e_start="15695" e_stop="15590"/>
          <exon e_start="14839" e_stop="14673"/>
          <exon e_start="13981" e_stop="13604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTAAAGGACCCCAAGGCCGTGGAATTCAGGACTGTGAAAGTGCGAAACCCAGGTAATTGCATTCAGATATTCTCTTCCAAAGTAATTTAGTAGTTTACCTGCATCCAGTGTTTCCTCATAGAAAGAGAAATCATTTGGCATAAAATCACATTATCACTTGACCAAGATAAAATGGGGCAAGAAGGGAATATTAATAACTGAAGTGTGTCTACTGGTTTCAGGTCCAAATGGAGAAGAATATGCATGGTACCAGTGCACGGTGGGCAATGAATCTTTTTTGTTATAAATTACAACCCGTTATTCTTGTAATCTCATTCTTTTATTGGTGTCACATGGAATATCAAGATTGTTTTTCACGGTTGATAGTTTTTATACATTCAACCTAAGTTCAATTTAATTCTATGTTTCAAGGTGAGTGGTGGGAGAGAAGGCCGCCCTATTGGAGCTTATGAGCTTGCGAAAGCTGTTGAGGAATTAGGAGCTGGGGAGATACTGCTGAACTGCATTGATTGTGATGGTACGATGTTCATGAGTTTGACGTATATATATTCTACCTTCGAGGTTGTGTTGGAATGGGTCTGAAGATGGTCAATGCCATAATTTGGTATTTCTATTGTAATATTCGCCAAGCAACAGTAGAATTTGCATGTCCTTTCTGCTTTGTTTGTCCAGATATTGTTCCCATTGCACCAGAAGGGAGCTGTTTTAGAAGCAAAGAAATCAAAAAGATTTTATTGGGGATGTTTTCGATGTAGTATTCCCAAAACTCGCTTTGGTTGTATTAGAAATTCAAATGTGAAAAGTTAAAGAAAGTTTCATCTTTGAACCCACTGCTTGCATTGTATTTAAAAGTTCTCTTAACAAATGGTAAAATTGGATGAGAGAAGTATTTGCCATATTACACCTTCCTTTGTGTGTAATTATTTTTCTGTTTCCCCCTTTAATCTACTTCTCCTAATACTTAAGGTTAGCTGTCTGTTCTTAACTTACCTGGTATGATCCATGGTACTTGTGAATATAACCATACAAAACATGCATAGTTGGCCACTCTTGATATGACTTCTTTTTTTGCCTTATTAGGACAGAATTTTCATTCACCCATTAGCTCTACTCCAAAGCTTGCAGTCTTTTGTTTTCCCCCCTTCTTGTTAGGATAATAGATTGGTCATGCAACCTGTGGGTTCCTTTTTAACTCTTGGCAACAATCCACTTCATGTATTTGTGGACAATGTAACGCCTAATTTTTGCTCTTCTTATGTCTTTTCAGGTCAAGGAAAGGGATTTGATATAGACCTAATTAAGTTGGTTTCAGATGCTGTAAGCATTCCTGTGATTGCAAGCAGTGGAGCTGGAGCTGTTGAACACTTTACAGAGGTCTTCAGAGAAACAAATGCTTCTGCTGCCCTTGCTGCTGGAATTTTCCATAGAAAGGAGGTAACATGACTATACATTAAACAGATGCCTTCTTTTGTACCTTTAAGTTGATCAATGTTCAGTTTCTGTGAGCTCGATAACAAAAGAGATTGATTGGCAGAAGTTAGATGAGAGACACGGTAGATGCCAATGTCTCTGCTGAGTGCTGGCAGCATGCACCTCTTCAGAGAAAGTGGATACCTATTGTTTGTGTTTAACGAGCAAAGCCTTGCATATAAAGGGGTTTTATATATCTTCTTAAATTGATCGAAGTAAAATCTGCCGGTTGTTAGCATAATTAACCTCTCTTGAAAGTGCCTTTTTATTTCTTCCAAAAGTGTATATTTAAGTGACATATATGGCTTTAAACAAAGCCATAGGTAGCCTGTATGGTACCAAAGGGATGCAGTACAGAACCTGCCACAGCACATCCTCATTTTTCATCACCCACCACCTCATTCACACTAACGAGAAAGTAAAAATGAACATAAACATGGTTGAACTAGAGTTCTTGGGAGGGAAGTGTTTGTTTAAAACTGAACATACAATATGTATTTATTCTGGAATACAACATGAATAACTTGTTTCTTATCTACCTACCAACCGTTGTATAGTAACATACAACAATTCAAGTTCCCAGTTGTAATATCGGTACACATAATGTGGAGCTCTGACTGATGTAGGCTTATATAATTTGTCTCCTCAATTTCAGGTTCCCATTCAAGCCGTGAAAGAGCACCTGTCAGAGGAAGGCATAGAGGTTAGAATGTAACCACATTTTTGCTATCGAGCAACTCGATATGCAGTCCTATCCTTTGCCATTCCTTGTTACTTGATGTTTATATCACTGAATATCAGTTTCTTTTATCTTGTTGCTGCGAACGAAGCCTTTTTCAATATCTTGCACTTATAGCCTCGTGCCAATTTTGAGCAAGTTATCATTGTAAAA-TTGTGTTGTTAAATTATTTGTGTACACTTTCTTCAGTATATGGGTTATTAGTTGGACATGTCTTGGGGTATTAGTTCTTGAGTATCATCGTGAATGATGAA-TATACATTTTGTTGAACAAAGTTCACAAATTTCTTTGCTG</genome_strand>
        <mrna_strand>ACGTAAAGGACCCCAAGGCCGTGGATTCAGGGACTGTGAAAGTGCGAAACCCAG.........................................................................................................................................................................GTCCAAATGGAGAAGAATATGCATGGTACCAGTGCACG........................................................................................................................................................GTGAGTGGTGGGAGAGAAGGCCGCCCTATTGGAGCTTATGAGCTTGCGAAAGCTGTTGAGGAATTAGGAGCTGGGGAGATACTGCTGAACTGCATTGATTGTGATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGGAAAGGGATTTGATATAGACCTAATTAAGTTGGTTTCAGATGCTGTAAGCATTCCTGTGATTGCAAGCAGTGGAGCTGGAGCTGTTGAACACTTTACAGAGGTCTTCAGAGAAACAAATGCTTCTGCTGCCCTTGCTGCTGGAATTTTCCATAGAAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCATTCAAGCCGTGAAAGAGCATCTGTCAGAGGAAGGCATAGAGGTTAGAATGTAACCACATTTTTGCTATCGAGCAACTCGATATGCAGTCCTATCCTTTGCAACTCCTTGTTACTTGATGTTTATATCACTGAATATCAGTTTCTTTTATCTTGTTGCTGCGAATGAAGCCTTTTTCAATATCTTGCACTTATAGCCTCGTGCCAATTTTGAGCAAGTTATCATTGTAAAATTTGTATTGTTAAATTATTTGTGTACACTTTCTTCAGTATATGAGTTATTAGTTGGACATGTCTTGGGGTATTAGTTCTTGAGTGTCATCGTCAATGATGAANTATACATTTTGTTGAACAAAGTTCACAAATTTCTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251028" ref_strand="-" ref_description="SGN-E251028 [cLEG-17-B13]">
      <seq>tactgctgaactgcattgattgtgatggtcaaggaaagggatttgatatagacctaattaagttggtttcagatgctgtaagcattcctgtgattgcaagcagtggagctggagctgttgaacactttacagaggtcttcagagaaacaaatgcttctgctgcccttgctgctggaattttccatagaaaggaggttcccattcaagccgtgaaagagcacctgtcagaggaaggcatagaggttagaatgtaaccacatttttgctatcgagcaactcgatatgcagtcctatcctttgccattccttgttacttgatgtttatatcactgaatatcagtttcttttatcttgttgctgcgaacgaagcctttttcaatatcttgcacttatagcctcgtgccaattttgagcaagttatcattgtaaaattgtgttgttaaattatttgtgtacactttcttcagtatatgggttattagttggacatgtcttggggtattagttcttgagtatcatcgtgaatgatgaatatacattttgttgaacaaagttcacaaatttctttgctgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="15916" stop="13301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15616" g_stop="15590" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15589" i_stop="14840" i_length="750">
            <donor d_prob="0.916" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14839" g_stop="14673" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="194" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14672" i_stop="13982" i_length="691">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13981" g_stop="13604" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="572" r_length="378" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E251028" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251028" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15616" e_stop="15590"/>
          <exon e_start="14839" e_stop="14673"/>
          <exon e_start="13981" e_stop="13604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGCTGAACTGCATTGATTGTGATGGTACGATGTTCATGAGTTTGACGTATATATATTCTACCTTCGAGGTTGTGTTGGAATGGGTCTGAAGATGGTCAATGCCATAATTTGGTATTTCTATTGTAATATTCGCCAAGCAACAGTAGAATTTGCATGTCCTTTCTGCTTTGTTTGTCCAGATATTGTTCCCATTGCACCAGAAGGGAGCTGTTTTAGAAGCAAAGAAATCAAAAAGATTTTATTGGGGATGTTTTCGATGTAGTATTCCCAAAACTCGCTTTGGTTGTATTAGAAATTCAAATGTGAAAAGTTAAAGAAAGTTTCATCTTTGAACCCACTGCTTGCATTGTATTTAAAAGTTCTCTTAACAAATGGTAAAATTGGATGAGAGAAGTATTTGCCATATTACACCTTCCTTTGTGTGTAATTATTTTTCTGTTTCCCCCTTTAATCTACTTCTCCTAATACTTAAGGTTAGCTGTCTGTTCTTAACTTACCTGGTATGATCCATGGTACTTGTGAATATAACCATACAAAACATGCATAGTTGGCCACTCTTGATATGACTTCTTTTTTTGCCTTATTAGGACAGAATTTTCATTCACCCATTAGCTCTACTCCAAAGCTTGCAGTCTTTTGTTTTCCCCCCTTCTTGTTAGGATAATAGATTGGTCATGCAACCTGTGGGTTCCTTTTTAACTCTTGGCAACAATCCACTTCATGTATTTGTGGACAATGTAACGCCTAATTTTTGCTCTTCTTATGTCTTTTCAGGTCAAGGAAAGGGATTTGATATAGACCTAATTAAGTTGGTTTCAGATGCTGTAAGCATTCCTGTGATTGCAAGCAGTGGAGCTGGAGCTGTTGAACACTTTACAGAGGTCTTCAGAGAAACAAATGCTTCTGCTGCCCTTGCTGCTGGAATTTTCCATAGAAAGGAGGTAACATGACTATACATTAAACAGATGCCTTCTTTTGTACCTTTAAGTTGATCAATGTTCAGTTTCTGTGAGCTCGATAACAAAAGAGATTGATTGGCAGAAGTTAGATGAGAGACACGGTAGATGCCAATGTCTCTGCTGAGTGCTGGCAGCATGCACCTCTTCAGAGAAAGTGGATACCTATTGTTTGTGTTTAACGAGCAAAGCCTTGCATATAAAGGGGTTTTATATATCTTCTTAAATTGATCGAAGTAAAATCTGCCGGTTGTTAGCATAATTAACCTCTCTTGAAAGTGCCTTTTTATTTCTTCCAAAAGTGTATATTTAAGTGACATATATGGCTTTAAACAAAGCCATAGGTAGCCTGTATGGTACCAAAGGGATGCAGTACAGAACCTGCCACAGCACATCCTCATTTTTCATCACCCACCACCTCATTCACACTAACGAGAAAGTAAAAATGAACATAAACATGGTTGAACTAGAGTTCTTGGGAGGGAAGTGTTTGTTTAAAACTGAACATACAATATGTATTTATTCTGGAATACAACATGAATAACTTGTTTCTTATCTACCTACCAACCGTTGTATAGTAACATACAACAATTCAAGTTCCCAGTTGTAATATCGGTACACATAATGTGGAGCTCTGACTGATGTAGGCTTATATAATTTGTCTCCTCAATTTCAGGTTCCCATTCAAGCCGTGAAAGAGCACCTGTCAGAGGAAGGCATAGAGGTTAGAATGTAACCACATTTTTGCTATCGAGCAACTCGATATGCAGTCCTATCCTTTGCCATTCCTTGTTACTTGATGTTTATATCACTGAATATCAGTTTCTTTTATCTTGTTGCTGCGAACGAAGCCTTTTTCAATATCTTGCACTTATAGCCTCGTGCCAATTTTGAGCAAGTTATCATTGTAAAATTGTGTTGTTAAATTATTTGTGTACACTTTCTTCAGTATATGGGTTATTAGTTGGACATGTCTTGGGGTATTAGTTCTTGAGTATCATCGTGAATGATGAATATACATTTTGTTGAACAAAGTTCACAAATTTCTTTGCTG</genome_strand>
        <mrna_strand>TACTGCTGAACTGCATTGATTGTGATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGGAAAGGGATTTGATATAGACCTAATTAAGTTGGTTTCAGATGCTGTAAGCATTCCTGTGATTGCAAGCAGTGGAGCTGGAGCTGTTGAACACTTTACAGAGGTCTTCAGAGAAACAAATGCTTCTGCTGCCCTTGCTGCTGGAATTTTCCATAGAAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCATTCAAGCCGTGAAAGAGCACCTGTCAGAGGAAGGCATAGAGGTTAGAATGTAACCACATTTTTGCTATCGAGCAACTCGATATGCAGTCCTATCCTTTGCCATTCCTTGTTACTTGATGTTTATATCACTGAATATCAGTTTCTTTTATCTTGTTGCTGCGAACGAAGCCTTTTTCAATATCTTGCACTTATAGCCTCGTGCCAATTTTGAGCAAGTTATCATTGTAAAATTGTGTTGTTAAATTATTTGTGTACACTTTCTTCAGTATATGGGTTATTAGTTGGACATGTCTTGGGGTATTAGTTCTTGAGTATCATCGTGAATGATGAATATACATTTTGTTGAACAAAGTTCACAAATTTCTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704115" ref_strand="+" ref_description="SGN-E704115 [FA23BF01]">
      <seq>ttataataacgtcaatctgtttatcgtttcacttactgtctttgaaggtgaaaactggaaagagcagtctagagcagatctcccgagtttatggaaatcaggcagtagttgtaagcattgatcctcgaagggtgtatgtaaaggaccccaaggccgtggaattcaggactgtgaaagtgcgaaacccaggtccaaatggagaagaatatgcatggtaccagtgcacggtgggcaatgaatcttttttgttataaattacaacccgttattcttgtaatctcattcttttattggtgtcacatggaatatcaagattgtttttcacggttgatagtttttatacattcaacctaagttcaatttaattctatgtttcaaggtgagtggtgggagagaaggccgccctattggagcttatgagcttgcgaaagctgttgaggaattaggagctggggagatactgctgaactgcattgattgtgatggtcaaggaaagggatttgatatagacctaattaagttggtttcagatgctgtaagcattcctgtgattgcaagcagtggagctggagctgttgaacactttacagaggtcttcagagaaacaaatgcttctgctgcccttgctgctggaattttccatagaaaggaggttcccattncagccgtgaaagagcacctgtcagaggaaggcatagaggttagaatgtaaccacatttttgctatcgagcaactcgatatgcagtcctatcctttgccattccnttgttactgatgtttatatcactgaatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="16813" stop="13538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16513" g_stop="16413" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16412" i_stop="16143" i_length="270">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16142" g_stop="16055" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="189" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16054" i_stop="15886" i_length="169">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15885" g_stop="15590" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="485" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15589" i_stop="14840" i_length="750">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14839" g_stop="14673" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="652" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14672" i_stop="13982" i_length="691">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13981" g_stop="13838" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="796" r_length="144" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E704115" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16513" e_stop="16413"/>
          <exon e_start="16142" e_stop="16055"/>
          <exon e_start="15885" e_stop="15590"/>
          <exon e_start="14839" e_stop="14673"/>
          <exon e_start="13981" e_stop="13838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAATAACGTCAATCTGTTTATCGTTTCACTTACTGTCTTTGAAGGTGAAAACTGGAAAGAGCAGTCTAGAGCAGATCTCCCGAGTTTATGGAAATCAGGTTGATTTAAAGCCATGTTAAACTTTATGCTAGTTTCTTGATGTCTGATAGTAATGATAACACATTTGTTGTGTCACTATCCTAGGTTGAATATCTTAGTTTCCAATTTTCTCTTCAGTCATCAATGATGAAGAGTGACTAAGACATATTAATCCATAAGCGCTTTTCCTTGTCTGCTTTCTTTCTTATATGAATAGCATACTCATTATTTAGTGGGCATGTTGTGCAAGAAAAATGTTGTAATTGGTTGGATGTGTTGTGATATTGTAGGCAGTAGTTGTAAGCATTGATCCTCGAAGGGTGTATGTAAAGGACCCCAAGGCCGTGGAATTCAGGACTGTGAAAGTGCGAAACCCAGGTAATTGCATTCAGATATTCTCTTCCAAAGTAATTTAGTAGTTTACCTGCATCCAGTGTTTCCTCATAGAAAGAGAAATCATTTGGCATAAAATCACATTATCACTTGACCAAGATAAAATGGGGCAAGAAGGGAATATTAATAACTGAAGTGTGTCTACTGGTTTCAGGTCCAAATGGAGAAGAATATGCATGGTACCAGTGCACGGTGGGCAATGAATCTTTTTTGTTATAAATTACAACCCGTTATTCTTGTAATCTCATTCTTTTATTGGTGTCACATGGAATATCAAGATTGTTTTTCACGGTTGATAGTTTTTATACATTCAACCTAAGTTCAATTTAATTCTATGTTTCAAGGTGAGTGGTGGGAGAGAAGGCCGCCCTATTGGAGCTTATGAGCTTGCGAAAGCTGTTGAGGAATTAGGAGCTGGGGAGATACTGCTGAACTGCATTGATTGTGATGGTACGATGTTCATGAGTTTGACGTATATATATTCTACCTTCGAGGTTGTGTTGGAATGGGTCTGAAGATGGTCAATGCCATAATTTGGTATTTCTATTGTAATATTCGCCAAGCAACAGTAGAATTTGCATGTCCTTTCTGCTTTGTTTGTCCAGATATTGTTCCCATTGCACCAGAAGGGAGCTGTTTTAGAAGCAAAGAAATCAAAAAGATTTTATTGGGGATGTTTTCGATGTAGTATTCCCAAAACTCGCTTTGGTTGTATTAGAAATTCAAATGTGAAAAGTTAAAGAAAGTTTCATCTTTGAACCCACTGCTTGCATTGTATTTAAAAGTTCTCTTAACAAATGGTAAAATTGGATGAGAGAAGTATTTGCCATATTACACCTTCCTTTGTGTGTAATTATTTTTCTGTTTCCCCCTTTAATCTACTTCTCCTAATACTTAAGGTTAGCTGTCTGTTCTTAACTTACCTGGTATGATCCATGGTACTTGTGAATATAACCATACAAAACATGCATAGTTGGCCACTCTTGATATGACTTCTTTTTTTGCCTTATTAGGACAGAATTTTCATTCACCCATTAGCTCTACTCCAAAGCTTGCAGTCTTTTGTTTTCCCCCCTTCTTGTTAGGATAATAGATTGGTCATGCAACCTGTGGGTTCCTTTTTAACTCTTGGCAACAATCCACTTCATGTATTTGTGGACAATGTAACGCCTAATTTTTGCTCTTCTTATGTCTTTTCAGGTCAAGGAAAGGGATTTGATATAGACCTAATTAAGTTGGTTTCAGATGCTGTAAGCATTCCTGTGATTGCAAGCAGTGGAGCTGGAGCTGTTGAACACTTTACAGAGGTCTTCAGAGAAACAAATGCTTCTGCTGCCCTTGCTGCTGGAATTTTCCATAGAAAGGAGGTAACATGACTATACATTAAACAGATGCCTTCTTTTGTACCTTTAAGTTGATCAATGTTCAGTTTCTGTGAGCTCGATAACAAAAGAGATTGATTGGCAGAAGTTAGATGAGAGACACGGTAGATGCCAATGTCTCTGCTGAGTGCTGGCAGCATGCACCTCTTCAGAGAAAGTGGATACCTATTGTTTGTGTTTAACGAGCAAAGCCTTGCATATAAAGGGGTTTTATATATCTTCTTAAATTGATCGAAGTAAAATCTGCCGGTTGTTAGCATAATTAACCTCTCTTGAAAGTGCCTTTTTATTTCTTCCAAAAGTGTATATTTAAGTGACATATATGGCTTTAAACAAAGCCATAGGTAGCCTGTATGGTACCAAAGGGATGCAGTACAGAACCTGCCACAGCACATCCTCATTTTTCATCACCCACCACCTCATTCACACTAACGAGAAAGTAAAAATGAACATAAACATGGTTGAACTAGAGTTCTTGGGAGGGAAGTGTTTGTTTAAAACTGAACATACAATATGTATTTATTCTGGAATACAACATGAATAACTTGTTTCTTATCTACCTACCAACCGTTGTATAGTAACATACAACAATTCAAGTTCCCAGTTGTAATATCGGTACACATAATGTGGAGCTCTGACTGATGTAGGCTTATATAATTTGTCTCCTCAATTTCAGGTTCCCATTCAAGCCGTGAAAGAGCACCTGTCAGAGGAAGGCATAGAGGTTAGAATGTAACCACATTTTTGCTATCGAGCAACTCGATATGCAGTCCTATCCTTTGCCATTCC-TTGTTACTTGATGTTTATATCACTGAATATC</genome_strand>
        <mrna_strand>TTATAATAACGTCAATCTGTTTATCGTTTCACTTACTGTCTTTGAAGGTGAAAACTGGAAAGAGCAGTCTAGAGCAGATCTCCCGAGTTTATGGAAATCAG..............................................................................................................................................................................................................................................................................GCAGTAGTTGTAAGCATTGATCCTCGAAGGGTGTATGTAAAGGACCCCAAGGCCGTGGAATTCAGGACTGTGAAAGTGCGAAACCCAG.........................................................................................................................................................................GTCCAAATGGAGAAGAATATGCATGGTACCAGTGCACGGTGGGCAATGAATCTTTTTTGTTATAAATTACAACCCGTTATTCTTGTAATCTCATTCTTTTATTGGTGTCACATGGAATATCAAGATTGTTTTTCACGGTTGATAGTTTTTATACATTCAACCTAAGTTCAATTTAATTCTATGTTTCAAGGTGAGTGGTGGGAGAGAAGGCCGCCCTATTGGAGCTTATGAGCTTGCGAAAGCTGTTGAGGAATTAGGAGCTGGGGAGATACTGCTGAACTGCATTGATTGTGATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGGAAAGGGATTTGATATAGACCTAATTAAGTTGGTTTCAGATGCTGTAAGCATTCCTGTGATTGCAAGCAGTGGAGCTGGAGCTGTTGAACACTTTACAGAGGTCTTCAGAGAAACAAATGCTTCTGCTGCCCTTGCTGCTGGAATTTTCCATAGAAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCATTNCAGCCGTGAAAGAGCACCTGTCAGAGGAAGGCATAGAGGTTAGAATGTAACCACATTTTTGCTATCGAGCAACTCGATATGCAGTCCTATCCTTTGCCATTCCNTTGTTAC-TGATGTTTATATCACTGAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700862" ref_strand="+" ref_description="SGN-E700862 [FA14BE05]">
      <seq>gaatacagaagaaaatgaggtgagaaaccttggcaagcccgtggatcttgctggacagtattacaaggatggggcagatgaggttagctttttaaatattactgctttccgagactttcccttgggtgatctgccaatgttgcaggtattgaggtatgcatcagagaatgtttttgtgccattaaccgttggaggtggtattagagacttcaaagatgcgaatggcagatactactctagtttggaagttgcttcaaaatattttcgttctggggcagacaaaatttctattggaagtgatgctgtttatgctgcggaagaatacttgaaatctggagtgaaaactggaaagagcagtctagagcagatctcccgagtttatggaaatcaggcagtagttgtaagcattgatcctcgaagggtgtatgtaaaggaccccaaggccgtggaattcaggactgtgaaagtgcgaaacccaggtccaaatggagaagaatatgcatggtaccagtgcacggtgagtggtgggagagaaggccgccctattggagcttatgagcttgcgaaagctgttgaggaattaggagctggggagatactgctgaactgcattgattgtgatggtcaaggaaagggatttgatatagacctaattaagttggtttcagatgctgtaagcattcctgtgattgcaagcagtggagctggagctgttgaacactttacagaggtcttcagagaaacaaatgcttctgctgcccttgctgctggaattttccatagaaaggaggttcccattcaagccgtgaaagagcacctgtcagaggaaggcatagaggttaaaatgtaaccacatttttgctatcgagcaactcgatatgcagtcctatcctttgccattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="18271" stop="13569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17971" g_stop="17953" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17952" i_stop="17219" i_length="734">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17218" g_stop="17156" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="82" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17155" i_stop="17074" i_length="82">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.760" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17073" g_stop="17011" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="145" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17010" i_stop="16923" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16922" g_stop="16840" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="228" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16839" i_stop="16685" i_length="155">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16684" g_stop="16576" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="337" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16575" i_stop="16467" i_length="109">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16466" g_stop="16413" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="391" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16412" i_stop="16143" i_length="270">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16142" g_stop="16055" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="479" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16054" i_stop="15886" i_length="169">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15885" g_stop="15848" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="517" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15847" i_stop="15696" i_length="152">
            <donor d_prob="0.843" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15695" g_stop="15590" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="623" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="15589" i_stop="14840" i_length="750">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="14839" g_stop="14673" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="790" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="14672" i_stop="13982" i_length="691">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="13981" g_stop="13869" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="791" r_stop="903" r_length="113" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E700862" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17971" e_stop="17953"/>
          <exon e_start="17218" e_stop="17156"/>
          <exon e_start="17073" e_stop="17011"/>
          <exon e_start="16922" e_stop="16840"/>
          <exon e_start="16684" e_stop="16576"/>
          <exon e_start="16466" e_stop="16413"/>
          <exon e_start="16142" e_stop="16055"/>
          <exon e_start="15885" e_stop="15848"/>
          <exon e_start="15695" e_stop="15590"/>
          <exon e_start="14839" e_stop="14673"/>
          <exon e_start="13981" e_stop="13869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATACAGAAGAAAATGAGGTAAGTGAGCATTAGTCATTGTTTAACCATCATCTCCTTTTGAGCTCTGCCAGTTCAAATTAATCTTTTAGGCTGTTCAACATTGGAGTTGGTCTGCAGACAGTTGAAAGTGGACAAAACTGAGAGCCGACAGAACTTATTTAGAAAAGGAGATCATCAAGAGATGTAAAAAAGATTATGAGGAAAATAAACTGTCATTTTCTTATATCGAAAAAATAAAGGGATGTATTCTTCCGCTGTTAAAGGGAAAAAAATTGCTAGTTCTTATTTTTTGTCCAATCTATTGCTCTGAGATTAGAAAACGGAAGCTATAAGATTGTAAGTTCTTAGGCTGCCAGAGCTGTTGGCTCTCTGTGATAAGTGGTTCAGGACTCATACTTGTAAATTATCTGAATGAAAACAGAAGGAACAATAGAAAGATAACGAGGAAGCTTGTTAGCGAGCTGCTTTGTGTCCTCAAAGGTTCTTGGTGTCAGGCACTTAATTCTTCTCTTTTGAGGATAAGATACCAAGGAGGTATCCAAAAACTTACAAGCTTTTGTATAGCTGTATCAGTTGATTTATAAAACACCTATAAATTCCATCAGCTGATCTAAGTTATCTACTATATCGCCGTTACACCAAAAGCATAAATTTTGTAGACATCTACTCTTTAAAAAACCCATGTGGATGTCTTACTTGATTCTATTTTTTCACTACATTCCTTTATTTAAAAATGATTGTCTTTCCTGAAGGTGAGAAACCTTGGCAAGCCCGTGGATCTTGCTGGACAGTATTACAAGGATGGGGCAGATGAGGTTTATCTTAGCATTAGTTATCTGTAACTCTTATGTTACTCTAACCTGACCCTAGACTTATTAGTTGCTTTCTGTGGTTTAGGTTAGCTTTTTAAATATTACTGCTTTCCGAGACTTTCCCTTGGGTGATCTGCCAATGTTGCAGGTGTGTTCTTTAGTTCAATATTCTGATTAATTGTTCCCGATAAAGATGATGTTTTGTGATAGTTTGTTCTACTTGATTTGCCATTTAGGTATTGAGGTATGCATCAGAGAATGTTTTTGTGCCATTAACCGTTGGAGGTGGTATTAGAGACTTCAAAGATGCGAATGGCAGGTTTATGGCTATTTGTTATTCTATTCATTCAATCAATAATGCTTTGATCTTCCAAATTGTTTGCCTAAAACTGAGTTGAAAAATTGAATAATGTTAATTAGGGATTGTGGACGATGATCTGACTTCACTAGTTGATATATAAACTTACTTCGCAGATACTACTCTAGTTTGGAAGTTGCTTCAGAATATTTTCGTTCTGGGGCAGACAAAATTTCTATTGGAAGTGATGCTGTTTATGCTGCGGAAGAATACTTGAAATCTGGAGTATGTAATTCTCATCTATGTGAAATTAATCTGTTTATTTTCAACTAAAAATGCTTCCTTATTTATAATAACGTCAATCTGTTTATCGTTTCACTTACTGTCTTTGAAGGTGAAAACTGGAAAGAGCAGTCTAGAGCAGATCTCCCGAGTTTATGGAAATCAGGTTGATTTAAAGCCATGTTAAACTTTATGCTAGTTTCTTGATGTCTGATAGTAATGATAACACATTTGTTGTGTCACTATCCTAGGTTGAATATCTTAGTTTCCAATTTTCTCTTCAGTCATCAATGATGAAGAGTGACTAAGACATATTAATCCATAAGCGCTTTTCCTTGTCTGCTTTCTTTCTTATATGAATAGCATACTCATTATTTAGTGGGCATGTTGTGCAAGAAAAATGTTGTAATTGGTTGGATGTGTTGTGATATTGTAGGCAGTAGTTGTAAGCATTGATCCTCGAAGGGTGTATGTAAAGGACCCCAAGGCCGTGGAATTCAGGACTGTGAAAGTGCGAAACCCAGGTAATTGCATTCAGATATTCTCTTCCAAAGTAATTTAGTAGTTTACCTGCATCCAGTGTTTCCTCATAGAAAGAGAAATCATTTGGCATAAAATCACATTATCACTTGACCAAGATAAAATGGGGCAAGAAGGGAATATTAATAACTGAAGTGTGTCTACTGGTTTCAGGTCCAAATGGAGAAGAATATGCATGGTACCAGTGCACGGTGGGCAATGAATCTTTTTTGTTATAAATTACAACCCGTTATTCTTGTAATCTCATTCTTTTATTGGTGTCACATGGAATATCAAGATTGTTTTTCACGGTTGATAGTTTTTATACATTCAACCTAAGTTCAATTTAATTCTATGTTTCAAGGTGAGTGGTGGGAGAGAAGGCCGCCCTATTGGAGCTTATGAGCTTGCGAAAGCTGTTGAGGAATTAGGAGCTGGGGAGATACTGCTGAACTGCATTGATTGTGATGGTACGATGTTCATGAGTTTGACGTATATATATTCTACCTTCGAGGTTGTGTTGGAATGGGTCTGAAGATGGTCAATGCCATAATTTGGTATTTCTATTGTAATATTCGCCAAGCAACAGTAGAATTTGCATGTCCTTTCTGCTTTGTTTGTCCAGATATTGTTCCCATTGCACCAGAAGGGAGCTGTTTTAGAAGCAAAGAAATCAAAAAGATTTTATTGGGGATGTTTTCGATGTAGTATTCCCAAAACTCGCTTTGGTTGTATTAGAAATTCAAATGTGAAAAGTTAAAGAAAGTTTCATCTTTGAACCCACTGCTTGCATTGTATTTAAAAGTTCTCTTAACAAATGGTAAAATTGGATGAGAGAAGTATTTGCCATATTACACCTTCCTTTGTGTGTAATTATTTTTCTGTTTCCCCCTTTAATCTACTTCTCCTAATACTTAAGGTTAGCTGTCTGTTCTTAACTTACCTGGTATGATCCATGGTACTTGTGAATATAACCATACAAAACATGCATAGTTGGCCACTCTTGATATGACTTCTTTTTTTGCCTTATTAGGACAGAATTTTCATTCACCCATTAGCTCTACTCCAAAGCTTGCAGTCTTTTGTTTTCCCCCCTTCTTGTTAGGATAATAGATTGGTCATGCAACCTGTGGGTTCCTTTTTAACTCTTGGCAACAATCCACTTCATGTATTTGTGGACAATGTAACGCCTAATTTTTGCTCTTCTTATGTCTTTTCAGGTCAAGGAAAGGGATTTGATATAGACCTAATTAAGTTGGTTTCAGATGCTGTAAGCATTCCTGTGATTGCAAGCAGTGGAGCTGGAGCTGTTGAACACTTTACAGAGGTCTTCAGAGAAACAAATGCTTCTGCTGCCCTTGCTGCTGGAATTTTCCATAGAAAGGAGGTAACATGACTATACATTAAACAGATGCCTTCTTTTGTACCTTTAAGTTGATCAATGTTCAGTTTCTGTGAGCTCGATAACAAAAGAGATTGATTGGCAGAAGTTAGATGAGAGACACGGTAGATGCCAATGTCTCTGCTGAGTGCTGGCAGCATGCACCTCTTCAGAGAAAGTGGATACCTATTGTTTGTGTTTAACGAGCAAAGCCTTGCATATAAAGGGGTTTTATATATCTTCTTAAATTGATCGAAGTAAAATCTGCCGGTTGTTAGCATAATTAACCTCTCTTGAAAGTGCCTTTTTATTTCTTCCAAAAGTGTATATTTAAGTGACATATATGGCTTTAAACAAAGCCATAGGTAGCCTGTATGGTACCAAAGGGATGCAGTACAGAACCTGCCACAGCACATCCTCATTTTTCATCACCCACCACCTCATTCACACTAACGAGAAAGTAAAAATGAACATAAACATGGTTGAACTAGAGTTCTTGGGAGGGAAGTGTTTGTTTAAAACTGAACATACAATATGTATTTATTCTGGAATACAACATGAATAACTTGTTTCTTATCTACCTACCAACCGTTGTATAGTAACATACAACAATTCAAGTTCCCAGTTGTAATATCGGTACACATAATGTGGAGCTCTGACTGATGTAGGCTTATATAATTTGTCTCCTCAATTTCAGGTTCCCATTCAAGCCGTGAAAGAGCACCTGTCAGAGGAAGGCATAGAGGTTAGAATGTAACCACATTTTTGCTATCGAGCAACTCGATATGCAGTCCTATCCTTTGCCATTCC</genome_strand>
        <mrna_strand>GAATACAGAAGAAAATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAACCTTGGCAAGCCCGTGGATCTTGCTGGACAGTATTACAAGGATGGGGCAGATGAG..................................................................................GTTAGCTTTTTAAATATTACTGCTTTCCGAGACTTTCCCTTGGGTGATCTGCCAATGTTGCAG........................................................................................GTATTGAGGTATGCATCAGAGAATGTTTTTGTGCCATTAACCGTTGGAGGTGGTATTAGAGACTTCAAAGATGCGAATGGCAG...........................................................................................................................................................ATACTACTCTAGTTTGGAAGTTGCTTCAAAATATTTTCGTTCTGGGGCAGACAAAATTTCTATTGGAAGTGATGCTGTTTATGCTGCGGAAGAATACTTGAAATCTGGA.............................................................................................................GTGAAAACTGGAAAGAGCAGTCTAGAGCAGATCTCCCGAGTTTATGGAAATCAG..............................................................................................................................................................................................................................................................................GCAGTAGTTGTAAGCATTGATCCTCGAAGGGTGTATGTAAAGGACCCCAAGGCCGTGGAATTCAGGACTGTGAAAGTGCGAAACCCAG.........................................................................................................................................................................GTCCAAATGGAGAAGAATATGCATGGTACCAGTGCACG........................................................................................................................................................GTGAGTGGTGGGAGAGAAGGCCGCCCTATTGGAGCTTATGAGCTTGCGAAAGCTGTTGAGGAATTAGGAGCTGGGGAGATACTGCTGAACTGCATTGATTGTGATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGGAAAGGGATTTGATATAGACCTAATTAAGTTGGTTTCAGATGCTGTAAGCATTCCTGTGATTGCAAGCAGTGGAGCTGGAGCTGTTGAACACTTTACAGAGGTCTTCAGAGAAACAAATGCTTCTGCTGCCCTTGCTGCTGGAATTTTCCATAGAAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCATTCAAGCCGTGAAAGAGCACCTGTCAGAGGAAGGCATAGAGGTTAAAATGTAACCACATTTTTGCTATCGAGCAACTCGATATGCAGTCCTATCCTTTGCCATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710295" ref_strand="+" ref_description="SGN-E710295 [FA55AA04]">
      <seq>ccctgttgacagtttcacttctgcttcatcaacgacgacaccgccttcatcttattcctccacttctcaatctcttcgtttcctgcgttacaagcctaatgcgaaacctctgaactacaaatcttccagaagcttctcagcccgcgcttccgccaccagtgccgatgattctgtggtaactctacttgattatggtgctggcaatgtgcggagtgtcaggaatgcaattaaatatctcggtttcgacatcaaagatgtccaaacaccacaggacattttgaaagcaaaacgactcatttttcctggggttggtgcttttgctcctgccatggatgtgctaaacaagaagggaatggctgaagcactttgtgcttacattgagcaagatcgcccattcctaggcatttgtcttggactgcagctactttttgagtcaagtgaagaaaatggacaagtaaagggtcttggtttgattcctggagtagttggacgttttgactcttctaaagggatcagagtacctcacattggctggaatgcacttgaaatagcaaaagatactcaaattttggatgacgttggaaattcacatgtctatttcgtacattcttatcgggcaatgccgatgaaaatagagagtggatatcatcgacctgcaagtatggtgacgatttcatagcatcccattcagagaggaaatgtccatgccgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="21682" stop="18547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21389" g_stop="21217" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21216" i_stop="21088" i_length="129">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21087" g_stop="21005" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="256" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21004" i_stop="20375" i_length="630">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20374" g_stop="20280" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="351" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20279" i_stop="19841" i_length="439">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19840" g_stop="19737" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="455" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19736" i_stop="19227" i_length="510">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19226" g_stop="19057" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="625" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19056" i_stop="18934" i_length="123">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.570" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18933" g_stop="18847" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="713" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E710295" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21389" e_stop="21217"/>
          <exon e_start="21087" e_stop="21005"/>
          <exon e_start="20374" e_stop="20280"/>
          <exon e_start="19840" e_stop="19737"/>
          <exon e_start="19226" e_stop="19057"/>
          <exon e_start="18933" e_stop="18847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGCGGCCAGTTTCACTTCTGCTTCATCAACGACGACACCGTTTTCATCTTATTCCTCCACTTCTCAATCTCTTCGTTTCCTGCGTTACAAGCCTAATGCGAAACCTCTGAACTACAAATCTTCCAGAAGCTTCTCAGCCCGCGCTTCCGCCACCAGTGCCGATGATTCTGGTATGTTGAGTACTATAAATCAATGAGCAGAAACACTTGAACACTGTTAATTATATGTGAAATGATGGCTTAATTTGATGATAAGCAGCTTACGAGACTGTAATGCTTGTTGCTATAATTGTTTTGCAGTGGTAACTCTACTTGATTATGGTGCTGGCAATGTGCGGAGTGTCAGGAATGCAATTAAATATCTCGGTTTCGACATCAAAGATGTACTTTCTCTGCTTTTGCTGTTGTGGCTTTTATTTCTAATTTGAGTATTTAAAATTGAGGTGTATTTGTAGGAAATTAAGAGAAATGCAAGTCAAAGATGAACGTATTATGTATTCATCGCACCAAATTAGTTTTCCTTATGCACATCATTTACTTAGTTCAGTGTTACTCTTATGTTCATACAAATGAAGTTTGCACTCTTATAAAGTAGTGGAACTGAAATTACCGTGGCTTGTTGTTTCCCAGTGTCTTGGTGAGCAACAACTGAATGGATTTTCAGTTTTTTTTGCCCTTCATATATTATTTTCTTTTTGTCATATCAACCTTTAAGTGTTTGTATTTCGAGAATTTGCTCTTTGTCATATGAACCTTAAGCGTGTATGTACTTCGAGAATTTGAGTATATCCATGCACCTCAATCTCTGTGCTTTAACTTATGAATCATGGAATAATTTATGTTTAATTATTGTGGGGAGGTGTGAAAAGTTTATTACATGAGCGTGCCAAAGCCAAAATGGAGAAAGTATGCATGCATTTTCAGTTTTTTTCTACTCTTCTCTACTCTCTTTCCGTACCTTTTTCATTTTGATTAAGCTCTTTGCATACCTTTTCTTTTTCAACGTCTTCCAGGTCCAAACACCACAGGACATTTTGAAAGCAAAACGACTCATTTTTCCTGGGGTTGGTGCTTTTGCTCCTGCCATGGATGTGCTAAACAAGAAGGGGTATGGTTTTCATCCATACTACACATAGGGATGGAACTGTTTATTTTTTCTGTACTTCTCATTGTAAATAAACATTTAAATTACTGTATCGCCATATGAGAAATTTAAAACTTAAGCATGGTTCTGGCTTTTGGGACAATACAACCTCTTGCTTCATATACATGTAAAAAGATAGTATTTGATTGAGATTGATCAACCAGTATTTTGTATTTACGGCTTTTTCTGCAAAAAAAGTACTAATAAAGACACACCAACACCATATTTGACGAACCAGTTAAAAATACATAGTACTAATTTATTTTGGTTAAAGCTTTTGCAGCGATAAGAACATGTCTACAGAAAGTTCATGCATCTCTATTTTGTTCTTCTGTTTTATTTTCTCACTCCATATTATTATTTTTTGGCTTTGCTGAAAATTATGGGGATAATTGTTCTGCAGAATGGCTGAAGCACTTTGTGCTTACATTGAGCAAGATCGCCCATTCCTAGGCATTTGTCTTGGACTGCAGCTACTTTTTGAGTCAAGTGAAGAAAATGGACAAGGTCACAAATTAACATTAAGTATATTTATGGCTTTAGACATTTGATAATTAAATGAGTTCTAGTGAAGTGGCTTTTTTTCTAACTTTAAAGAGGAACCTCATGCAGCGAGATGCTTAACTTATGAAGTATGAGATTAATGTATGCTGCAAGAGCAGACAGGATCATTTTAGCACTTAAAATGGTTGTGTATTTTGGAATATCATCATGGATGAGGATCCAAGGCTTGCAGTTGTAGCTACAAGAGTTTTAATACCAAAGGAAATGAAATTGGGCCATCTACCAGCTTTACATTGTTACCTTATTGATGTCATACATTGAGTCCTTTGGTTTCACTTTTCCAGTTCCAAAGTATATTTTGATGATAATTTCCATTGCATAGTCCATCCCCCAAATTCAAGTGATCGTTACTCTCTAATATATATATCTCTGTTTGCTTGCCCTCAATTTCATGCATCGTTGTAACATATAGCCGCTTCATCTGAGAAACTGACTTTGTAACACGTTTATCAGTAAAGGGTCTTGGTTTGATTCCTGGAGTAGTTGGACGTTTTGACTCTTCTAAAGGGATCAGAGTACCTCACATTGGCTGGAATGCACTTGAAATAGCAAAAGATACTCAAATTTTGGATGACGTTGGAAATTCACATGTCTATTTCGTACATTCTTATCGGGCAATGCCGGTACTAATTCTCATTGAGTAAATATATATTGATAGTGATTCCATCCTCTTTTTTTCTAATTTTTAAGTTTATTTAGTACATGCGCAAGAAGCTTGATTCTAACATTTCTCGTAATTTAGTCAGATGAAAATAGAGAGTGGATATCATCGACCTGCAAGTATGGTGACGATTTCATAGCAT-CCATTCAGAGAGGAAATGTCCATGCCGTTC</genome_strand>
        <mrna_strand>CCCTGTTGACAGTTTCACTTCTGCTTCATCAACGACGACACCGCCTTCATCTTATTCCTCCACTTCTCAATCTCTTCGTTTCCTGCGTTACAAGCCTAATGCGAAACCTCTGAACTACAAATCTTCCAGAAGCTTCTCAGCCCGCGCTTCCGCCACCAGTGCCGATGATTCTG.................................................................................................................................TGGTAACTCTACTTGATTATGGTGCTGGCAATGTGCGGAGTGTCAGGAATGCAATTAAATATCTCGGTTTCGACATCAAAGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAACACCACAGGACATTTTGAAAGCAAAACGACTCATTTTTCCTGGGGTTGGTGCTTTTGCTCCTGCCATGGATGTGCTAAACAAGAAGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCTGAAGCACTTTGTGCTTACATTGAGCAAGATCGCCCATTCCTAGGCATTTGTCTTGGACTGCAGCTACTTTTTGAGTCAAGTGAAGAAAATGGACAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGGTCTTGGTTTGATTCCTGGAGTAGTTGGACGTTTTGACTCTTCTAAAGGGATCAGAGTACCTCACATTGGCTGGAATGCACTTGAAATAGCAAAAGATACTCAAATTTTGGATGACGTTGGAAATTCACATGTCTATTTCGTACATTCTTATCGGGCAATGCCG...........................................................................................................................ATGAAAATAGAGAGTGGATATCATCGACCTGCAAGTATGGTGACGATTTCATAGCATCCCATTCAGAGAGGAAATGTCCATGCCGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546517" ref_strand="+" ref_description="SGN-E546517 [TUS-69-O19]">
      <seq>gagaaaatggaggcggccagtttcacttctgcttcttcaacgacgacaccgttttcatcttattcctccacttctcaatctcttcgtttcctgcgttacaagcctaatgcgaaacctctgaactacaaatcttccagaagcttctcagtccgcgcttccgccaccggtgccgatgattctgtggtaactctacttgattatggtgctggcaatgtgcggagtgtcaggaatgcaattaaacatctcggtttcgacatcaaagatgtccaaacaccacaggacattttgaaagcaaaacgactcatttttcctggggttggtgcttttgctcctgccatggatgtgctaaacaagaagggaatggctgaagcactttgtgcttacattgagcaagatcgcccattcctaggcatttgtcttggactgcagctactttttgagtcaagtgaagaaaatggacaagtaaagggtcttggtttgattcctggagtagttggacgttttgactcttctaaagggatcagagtacctcacattggctggaatgcacttgaaatagcaaaagatactcaaattttggatgacgttggaaattcacatgtctatttcgtacattcttatcgggcaatgccgtcagatgaaaatagagagtggatatcatcgacctgcaagtatggtgacgatttcatagcatccattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="21697" stop="18571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21397" g_stop="21217" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21216" i_stop="21088" i_length="129">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21087" g_stop="21005" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="264" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21004" i_stop="20375" i_length="630">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20374" g_stop="20280" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="359" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20279" i_stop="19841" i_length="439">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19840" g_stop="19737" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="463" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19736" i_stop="19227" i_length="510">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19226" g_stop="19057" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="633" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19056" i_stop="18938" i_length="119">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18937" g_stop="18871" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="700" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E546517" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21397" e_stop="21217"/>
          <exon e_start="21087" e_stop="21005"/>
          <exon e_start="20374" e_stop="20280"/>
          <exon e_start="19840" e_stop="19737"/>
          <exon e_start="19226" e_stop="19057"/>
          <exon e_start="18937" e_stop="18871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAATGGAGGCGGCCAGTTTCACTTCTGCTTCATCAACGACGACACCGTTTTCATCTTATTCCTCCACTTCTCAATCTCTTCGTTTCCTGCGTTACAAGCCTAATGCGAAACCTCTGAACTACAAATCTTCCAGAAGCTTCTCAGCCCGCGCTTCCGCCACCAGTGCCGATGATTCTGGTATGTTGAGTACTATAAATCAATGAGCAGAAACACTTGAACACTGTTAATTATATGTGAAATGATGGCTTAATTTGATGATAAGCAGCTTACGAGACTGTAATGCTTGTTGCTATAATTGTTTTGCAGTGGTAACTCTACTTGATTATGGTGCTGGCAATGTGCGGAGTGTCAGGAATGCAATTAAATATCTCGGTTTCGACATCAAAGATGTACTTTCTCTGCTTTTGCTGTTGTGGCTTTTATTTCTAATTTGAGTATTTAAAATTGAGGTGTATTTGTAGGAAATTAAGAGAAATGCAAGTCAAAGATGAACGTATTATGTATTCATCGCACCAAATTAGTTTTCCTTATGCACATCATTTACTTAGTTCAGTGTTACTCTTATGTTCATACAAATGAAGTTTGCACTCTTATAAAGTAGTGGAACTGAAATTACCGTGGCTTGTTGTTTCCCAGTGTCTTGGTGAGCAACAACTGAATGGATTTTCAGTTTTTTTTGCCCTTCATATATTATTTTCTTTTTGTCATATCAACCTTTAAGTGTTTGTATTTCGAGAATTTGCTCTTTGTCATATGAACCTTAAGCGTGTATGTACTTCGAGAATTTGAGTATATCCATGCACCTCAATCTCTGTGCTTTAACTTATGAATCATGGAATAATTTATGTTTAATTATTGTGGGGAGGTGTGAAAAGTTTATTACATGAGCGTGCCAAAGCCAAAATGGAGAAAGTATGCATGCATTTTCAGTTTTTTTCTACTCTTCTCTACTCTCTTTCCGTACCTTTTTCATTTTGATTAAGCTCTTTGCATACCTTTTCTTTTTCAACGTCTTCCAGGTCCAAACACCACAGGACATTTTGAAAGCAAAACGACTCATTTTTCCTGGGGTTGGTGCTTTTGCTCCTGCCATGGATGTGCTAAACAAGAAGGGGTATGGTTTTCATCCATACTACACATAGGGATGGAACTGTTTATTTTTTCTGTACTTCTCATTGTAAATAAACATTTAAATTACTGTATCGCCATATGAGAAATTTAAAACTTAAGCATGGTTCTGGCTTTTGGGACAATACAACCTCTTGCTTCATATACATGTAAAAAGATAGTATTTGATTGAGATTGATCAACCAGTATTTTGTATTTACGGCTTTTTCTGCAAAAAAAGTACTAATAAAGACACACCAACACCATATTTGACGAACCAGTTAAAAATACATAGTACTAATTTATTTTGGTTAAAGCTTTTGCAGCGATAAGAACATGTCTACAGAAAGTTCATGCATCTCTATTTTGTTCTTCTGTTTTATTTTCTCACTCCATATTATTATTTTTTGGCTTTGCTGAAAATTATGGGGATAATTGTTCTGCAGAATGGCTGAAGCACTTTGTGCTTACATTGAGCAAGATCGCCCATTCCTAGGCATTTGTCTTGGACTGCAGCTACTTTTTGAGTCAAGTGAAGAAAATGGACAAGGTCACAAATTAACATTAAGTATATTTATGGCTTTAGACATTTGATAATTAAATGAGTTCTAGTGAAGTGGCTTTTTTTCTAACTTTAAAGAGGAACCTCATGCAGCGAGATGCTTAACTTATGAAGTATGAGATTAATGTATGCTGCAAGAGCAGACAGGATCATTTTAGCACTTAAAATGGTTGTGTATTTTGGAATATCATCATGGATGAGGATCCAAGGCTTGCAGTTGTAGCTACAAGAGTTTTAATACCAAAGGAAATGAAATTGGGCCATCTACCAGCTTTACATTGTTACCTTATTGATGTCATACATTGAGTCCTTTGGTTTCACTTTTCCAGTTCCAAAGTATATTTTGATGATAATTTCCATTGCATAGTCCATCCCCCAAATTCAAGTGATCGTTACTCTCTAATATATATATCTCTGTTTGCTTGCCCTCAATTTCATGCATCGTTGTAACATATAGCCGCTTCATCTGAGAAACTGACTTTGTAACACGTTTATCAGTAAAGGGTCTTGGTTTGATTCCTGGAGTAGTTGGACGTTTTGACTCTTCTAAAGGGATCAGAGTACCTCACATTGGCTGGAATGCACTTGAAATAGCAAAAGATACTCAAATTTTGGATGACGTTGGAAATTCACATGTCTATTTCGTACATTCTTATCGGGCAATGCCGGTACTAATTCTCATTGAGTAAATATATATTGATAGTGATTCCATCCTCTTTTTTTCTAATTTTTAAGTTTATTTAGTACATGCGCAAGAAGCTTGATTCTAACATTTCTCGTAATTTAGTCAGATGAAAATAGAGAGTGGATATCATCGACCTGCAAGTATGGTGACGATTTCATAGCATCCATTC</genome_strand>
        <mrna_strand>GAGAAAATGGAGGCGGCCAGTTTCACTTCTGCTTCTTCAACGACGACACCGTTTTCATCTTATTCCTCCACTTCTCAATCTCTTCGTTTCCTGCGTTACAAGCCTAATGCGAAACCTCTGAACTACAAATCTTCCAGAAGCTTCTCAGTCCGCGCTTCCGCCACCGGTGCCGATGATTCTG.................................................................................................................................TGGTAACTCTACTTGATTATGGTGCTGGCAATGTGCGGAGTGTCAGGAATGCAATTAAACATCTCGGTTTCGACATCAAAGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAACACCACAGGACATTTTGAAAGCAAAACGACTCATTTTTCCTGGGGTTGGTGCTTTTGCTCCTGCCATGGATGTGCTAAACAAGAAGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCTGAAGCACTTTGTGCTTACATTGAGCAAGATCGCCCATTCCTAGGCATTTGTCTTGGACTGCAGCTACTTTTTGAGTCAAGTGAAGAAAATGGACAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGGTCTTGGTTTGATTCCTGGAGTAGTTGGACGTTTTGACTCTTCTAAAGGGATCAGAGTACCTCACATTGGCTGGAATGCACTTGAAATAGCAAAAGATACTCAAATTTTGGATGACGTTGGAAATTCACATGTCTATTTCGTACATTCTTATCGGGCAATGCCG.......................................................................................................................TCAGATGAAAATAGAGAGTGGATATCATCGACCTGCAAGTATGGTGACGATTTCATAGCATCCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313188" ref_strand="+" ref_description="SGN-E313188 [cTOA-18-J7]">
      <seq>caaatcttccagaagcttctcagcccgcgcttccgccaccagtgccgatgattctgtggtaactctacttgattatggtgctggcaatgtgcggagtgtcaggaatgcaattaaatatctcggtttcgacatcaaagatgtccaaacaccacaggacattttgaaagcaaaacgactcatttttcctggggttggtgcttttgctcctgccatggatgtgctaaacaagaagggaatggctgaagcactttgtgcttacattgagcaagatcgcccattcctaggcatttgtcttggactgcagctactttttgagtcaagtgaagaaaatggacaagtaaagggtcttggtttgattcctggagtagttggacgttttgactcttctaaagggatcagagtacctcacattggctggaatgcacttgaaatagcaaaagatactcaaattttggatgacgttggaaattcacatgtctatttcgtacattcttatcgggcaatgccgtcagatgaaaatagagagtggatatcatcgacctgcaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="21572" stop="18597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21272" g_stop="21217" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21216" i_stop="21088" i_length="129">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21087" g_stop="21005" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="139" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21004" i_stop="20375" i_length="630">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20374" g_stop="20280" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="234" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20279" i_stop="19841" i_length="439">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19840" g_stop="19737" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="338" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19736" i_stop="19227" i_length="510">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19226" g_stop="19057" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="508" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19056" i_stop="18938" i_length="119">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18937" g_stop="18897" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="549" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E313188" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21272" e_stop="21217"/>
          <exon e_start="21087" e_stop="21005"/>
          <exon e_start="20374" e_stop="20280"/>
          <exon e_start="19840" e_stop="19737"/>
          <exon e_start="19226" e_stop="19057"/>
          <exon e_start="18937" e_stop="18897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCTTCCAGAAGCTTCTCAGCCCGCGCTTCCGCCACCAGTGCCGATGATTCTGGTATGTTGAGTACTATAAATCAATGAGCAGAAACACTTGAACACTGTTAATTATATGTGAAATGATGGCTTAATTTGATGATAAGCAGCTTACGAGACTGTAATGCTTGTTGCTATAATTGTTTTGCAGTGGTAACTCTACTTGATTATGGTGCTGGCAATGTGCGGAGTGTCAGGAATGCAATTAAATATCTCGGTTTCGACATCAAAGATGTACTTTCTCTGCTTTTGCTGTTGTGGCTTTTATTTCTAATTTGAGTATTTAAAATTGAGGTGTATTTGTAGGAAATTAAGAGAAATGCAAGTCAAAGATGAACGTATTATGTATTCATCGCACCAAATTAGTTTTCCTTATGCACATCATTTACTTAGTTCAGTGTTACTCTTATGTTCATACAAATGAAGTTTGCACTCTTATAAAGTAGTGGAACTGAAATTACCGTGGCTTGTTGTTTCCCAGTGTCTTGGTGAGCAACAACTGAATGGATTTTCAGTTTTTTTTGCCCTTCATATATTATTTTCTTTTTGTCATATCAACCTTTAAGTGTTTGTATTTCGAGAATTTGCTCTTTGTCATATGAACCTTAAGCGTGTATGTACTTCGAGAATTTGAGTATATCCATGCACCTCAATCTCTGTGCTTTAACTTATGAATCATGGAATAATTTATGTTTAATTATTGTGGGGAGGTGTGAAAAGTTTATTACATGAGCGTGCCAAAGCCAAAATGGAGAAAGTATGCATGCATTTTCAGTTTTTTTCTACTCTTCTCTACTCTCTTTCCGTACCTTTTTCATTTTGATTAAGCTCTTTGCATACCTTTTCTTTTTCAACGTCTTCCAGGTCCAAACACCACAGGACATTTTGAAAGCAAAACGACTCATTTTTCCTGGGGTTGGTGCTTTTGCTCCTGCCATGGATGTGCTAAACAAGAAGGGGTATGGTTTTCATCCATACTACACATAGGGATGGAACTGTTTATTTTTTCTGTACTTCTCATTGTAAATAAACATTTAAATTACTGTATCGCCATATGAGAAATTTAAAACTTAAGCATGGTTCTGGCTTTTGGGACAATACAACCTCTTGCTTCATATACATGTAAAAAGATAGTATTTGATTGAGATTGATCAACCAGTATTTTGTATTTACGGCTTTTTCTGCAAAAAAAGTACTAATAAAGACACACCAACACCATATTTGACGAACCAGTTAAAAATACATAGTACTAATTTATTTTGGTTAAAGCTTTTGCAGCGATAAGAACATGTCTACAGAAAGTTCATGCATCTCTATTTTGTTCTTCTGTTTTATTTTCTCACTCCATATTATTATTTTTTGGCTTTGCTGAAAATTATGGGGATAATTGTTCTGCAGAATGGCTGAAGCACTTTGTGCTTACATTGAGCAAGATCGCCCATTCCTAGGCATTTGTCTTGGACTGCAGCTACTTTTTGAGTCAAGTGAAGAAAATGGACAAGGTCACAAATTAACATTAAGTATATTTATGGCTTTAGACATTTGATAATTAAATGAGTTCTAGTGAAGTGGCTTTTTTTCTAACTTTAAAGAGGAACCTCATGCAGCGAGATGCTTAACTTATGAAGTATGAGATTAATGTATGCTGCAAGAGCAGACAGGATCATTTTAGCACTTAAAATGGTTGTGTATTTTGGAATATCATCATGGATGAGGATCCAAGGCTTGCAGTTGTAGCTACAAGAGTTTTAATACCAAAGGAAATGAAATTGGGCCATCTACCAGCTTTACATTGTTACCTTATTGATGTCATACATTGAGTCCTTTGGTTTCACTTTTCCAGTTCCAAAGTATATTTTGATGATAATTTCCATTGCATAGTCCATCCCCCAAATTCAAGTGATCGTTACTCTCTAATATATATATCTCTGTTTGCTTGCCCTCAATTTCATGCATCGTTGTAACATATAGCCGCTTCATCTGAGAAACTGACTTTGTAACACGTTTATCAGTAAAGGGTCTTGGTTTGATTCCTGGAGTAGTTGGACGTTTTGACTCTTCTAAAGGGATCAGAGTACCTCACATTGGCTGGAATGCACTTGAAATAGCAAAAGATACTCAAATTTTGGATGACGTTGGAAATTCACATGTCTATTTCGTACATTCTTATCGGGCAATGCCGGTACTAATTCTCATTGAGTAAATATATATTGATAGTGATTCCATCCTCTTTTTTTCTAATTTTTAAGTTTATTTAGTACATGCGCAAGAAGCTTGATTCTAACATTTCTCGTAATTTAGTCAGATGAAAATAGAGAGTGGATATCATCGACCTGCAAGTA</genome_strand>
        <mrna_strand>CAAATCTTCCAGAAGCTTCTCAGCCCGCGCTTCCGCCACCAGTGCCGATGATTCTG.................................................................................................................................TGGTAACTCTACTTGATTATGGTGCTGGCAATGTGCGGAGTGTCAGGAATGCAATTAAATATCTCGGTTTCGACATCAAAGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAACACCACAGGACATTTTGAAAGCAAAACGACTCATTTTTCCTGGGGTTGGTGCTTTTGCTCCTGCCATGGATGTGCTAAACAAGAAGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCTGAAGCACTTTGTGCTTACATTGAGCAAGATCGCCCATTCCTAGGCATTTGTCTTGGACTGCAGCTACTTTTTGAGTCAAGTGAAGAAAATGGACAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGGTCTTGGTTTGATTCCTGGAGTAGTTGGACGTTTTGACTCTTCTAAAGGGATCAGAGTACCTCACATTGGCTGGAATGCACTTGAAATAGCAAAAGATACTCAAATTTTGGATGACGTTGGAAATTCACATGTCTATTTCGTACATTCTTATCGGGCAATGCCG.......................................................................................................................TCAGATGAAAATAGAGAGTGGATATCATCGACCTGCAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359320" ref_strand="+" ref_description="SGN-E359320 [cLHT-31-D11]">
      <seq>agaaaatggaggcggccagtttcacttctgcttcttcaacgacgacaccgtggtcatcttattcctccacttctcaatctcttcgtttcctgcgttacaagcctaatgcgaaacctctgaactacaaatcttccagaagcttctcagtccgcgcttccgccaccggtgccgatgattctgtggtaactctacttgattatggtgctggcaatgtgcggagtgtcaggaatgcaattaaacatctcggtttcgacatcaaagatgtccaaacaccacaggacattttgaaagcaaaacgactcatttttcctggggttggtgcttttgctcctgccatggatgtgctaaacaagaaaggaatggctgaagcactttgtgcttacattgagcaagatcgcccattcctaggcatttgtcttggactgcagctactttttgagtcaagtgaagaaaatggacaagttaagggtcttggtttgattcctggagtagttggacgttttgactcttctaaagggatcagagtacctcacattggctggaatgcacttgaaatagcaaaagatacttcaatttttggatgacgttggaaattcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="21696" stop="18790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21396" g_stop="21217" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21216" i_stop="21088" i_length="129">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21087" g_stop="21005" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="263" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21004" i_stop="20375" i_length="630">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20374" g_stop="20280" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="358" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20279" i_stop="19841" i_length="439">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19840" g_stop="19737" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="462" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19736" i_stop="19227" i_length="510">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19226" g_stop="19090" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="600" r_length="138" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E359320" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21396" e_stop="21217"/>
          <exon e_start="21087" e_stop="21005"/>
          <exon e_start="20374" e_stop="20280"/>
          <exon e_start="19840" e_stop="19737"/>
          <exon e_start="19226" e_stop="19090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGGAGGCGGCCAGTTTCACTTCTGCTTCATCAACGACGACACCGTTTTCATCTTATTCCTCCACTTCTCAATCTCTTCGTTTCCTGCGTTACAAGCCTAATGCGAAACCTCTGAACTACAAATCTTCCAGAAGCTTCTCAGCCCGCGCTTCCGCCACCAGTGCCGATGATTCTGGTATGTTGAGTACTATAAATCAATGAGCAGAAACACTTGAACACTGTTAATTATATGTGAAATGATGGCTTAATTTGATGATAAGCAGCTTACGAGACTGTAATGCTTGTTGCTATAATTGTTTTGCAGTGGTAACTCTACTTGATTATGGTGCTGGCAATGTGCGGAGTGTCAGGAATGCAATTAAATATCTCGGTTTCGACATCAAAGATGTACTTTCTCTGCTTTTGCTGTTGTGGCTTTTATTTCTAATTTGAGTATTTAAAATTGAGGTGTATTTGTAGGAAATTAAGAGAAATGCAAGTCAAAGATGAACGTATTATGTATTCATCGCACCAAATTAGTTTTCCTTATGCACATCATTTACTTAGTTCAGTGTTACTCTTATGTTCATACAAATGAAGTTTGCACTCTTATAAAGTAGTGGAACTGAAATTACCGTGGCTTGTTGTTTCCCAGTGTCTTGGTGAGCAACAACTGAATGGATTTTCAGTTTTTTTTGCCCTTCATATATTATTTTCTTTTTGTCATATCAACCTTTAAGTGTTTGTATTTCGAGAATTTGCTCTTTGTCATATGAACCTTAAGCGTGTATGTACTTCGAGAATTTGAGTATATCCATGCACCTCAATCTCTGTGCTTTAACTTATGAATCATGGAATAATTTATGTTTAATTATTGTGGGGAGGTGTGAAAAGTTTATTACATGAGCGTGCCAAAGCCAAAATGGAGAAAGTATGCATGCATTTTCAGTTTTTTTCTACTCTTCTCTACTCTCTTTCCGTACCTTTTTCATTTTGATTAAGCTCTTTGCATACCTTTTCTTTTTCAACGTCTTCCAGGTCCAAACACCACAGGACATTTTGAAAGCAAAACGACTCATTTTTCCTGGGGTTGGTGCTTTTGCTCCTGCCATGGATGTGCTAAACAAGAAGGGGTATGGTTTTCATCCATACTACACATAGGGATGGAACTGTTTATTTTTTCTGTACTTCTCATTGTAAATAAACATTTAAATTACTGTATCGCCATATGAGAAATTTAAAACTTAAGCATGGTTCTGGCTTTTGGGACAATACAACCTCTTGCTTCATATACATGTAAAAAGATAGTATTTGATTGAGATTGATCAACCAGTATTTTGTATTTACGGCTTTTTCTGCAAAAAAAGTACTAATAAAGACACACCAACACCATATTTGACGAACCAGTTAAAAATACATAGTACTAATTTATTTTGGTTAAAGCTTTTGCAGCGATAAGAACATGTCTACAGAAAGTTCATGCATCTCTATTTTGTTCTTCTGTTTTATTTTCTCACTCCATATTATTATTTTTTGGCTTTGCTGAAAATTATGGGGATAATTGTTCTGCAGAATGGCTGAAGCACTTTGTGCTTACATTGAGCAAGATCGCCCATTCCTAGGCATTTGTCTTGGACTGCAGCTACTTTTTGAGTCAAGTGAAGAAAATGGACAAGGTCACAAATTAACATTAAGTATATTTATGGCTTTAGACATTTGATAATTAAATGAGTTCTAGTGAAGTGGCTTTTTTTCTAACTTTAAAGAGGAACCTCATGCAGCGAGATGCTTAACTTATGAAGTATGAGATTAATGTATGCTGCAAGAGCAGACAGGATCATTTTAGCACTTAAAATGGTTGTGTATTTTGGAATATCATCATGGATGAGGATCCAAGGCTTGCAGTTGTAGCTACAAGAGTTTTAATACCAAAGGAAATGAAATTGGGCCATCTACCAGCTTTACATTGTTACCTTATTGATGTCATACATTGAGTCCTTTGGTTTCACTTTTCCAGTTCCAAAGTATATTTTGATGATAATTTCCATTGCATAGTCCATCCCCCAAATTCAAGTGATCGTTACTCTCTAATATATATATCTCTGTTTGCTTGCCCTCAATTTCATGCATCGTTGTAACATATAGCCGCTTCATCTGAGAAACTGACTTTGTAACACGTTTATCAGTAAAGGGTCTTGGTTTGATTCCTGGAGTAGTTGGACGTTTTGACTCTTCTAAAGGGATCAGAGTACCTCACATTGGCTGGAATGCACTTGAAATAGCAAAAGATAC-TCAAATTTTGGATGACGTTGGAAATTCACAT</genome_strand>
        <mrna_strand>AGAAAATGGAGGCGGCCAGTTTCACTTCTGCTTCTTCAACGACGACACCGTGGTCATCTTATTCCTCCACTTCTCAATCTCTTCGTTTCCTGCGTTACAAGCCTAATGCGAAACCTCTGAACTACAAATCTTCCAGAAGCTTCTCAGTCCGCGCTTCCGCCACCGGTGCCGATGATTCTG.................................................................................................................................TGGTAACTCTACTTGATTATGGTGCTGGCAATGTGCGGAGTGTCAGGAATGCAATTAAACATCTCGGTTTCGACATCAAAGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAACACCACAGGACATTTTGAAAGCAAAACGACTCATTTTTCCTGGGGTTGGTGCTTTTGCTCCTGCCATGGATGTGCTAAACAAGAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCTGAAGCACTTTGTGCTTACATTGAGCAAGATCGCCCATTCCTAGGCATTTGTCTTGGACTGCAGCTACTTTTTGAGTCAAGTGAAGAAAATGGACAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGGGTCTTGGTTTGATTCCTGGAGTAGTTGGACGTTTTGACTCTTCTAAAGGGATCAGAGTACCTCACATTGGCTGGAATGCACTTGAAATAGCAAAAGATACTTCAATTTTTGGATGACGTTGGAAATTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366467" ref_strand="+" ref_description="SGN-E366467 [cLPT-13-E9]">
      <seq>tttgattaagaaacaaggaggctcgttgaatgaatctatgatcaaattatacgctcagcagatcttacagggattggattatcttcactcaattgggattgtgcattgtgatgtgaaagggcagaacattttggtttgtgaaaatgggaatgttaaaattgctgatttgggatgtgcgaaattgatgaaagatggaaaaaattctggattttccggtacaccggcttttatggcacctgaagttgctcgaggcgaagaacaaggatttgcagctgatatttgggcttttggttgtacaattattgagatggctacaggattagttccttggtgtgagatcaatgaccctgtttctgctctgtatagaattggttattcaggggatatgccacaattcccaaacaatatgtcaaaggatgccacagaatttctcggtaaatgcttgatgaaatgcccgaatgagcgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="26822" stop="25755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26522" g_stop="26055" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E366467" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26522" e_stop="26055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTAAGAGACAAGGAGGTTCGTTGAATGAATGTATGATCAAATTATACGCTCAACAAATCTTACAGGGATTGGATTATCTTCACTCCATTGGGATTGTGCATTGTGATGTGAAAGGGCAGAACATTTTGATTTGTGAAAATGGGAATGTTAAAATTGCTGATTTGGGATGTGCGAAATTGATGAAAGATGGAAAAAATTCTGGATTTTCCGGTACACCGGCTTTTATGGCACCTGAAGTTGCTCGAAGCGAAGAACAAGGATTTGCGGCTGATATTTGGGCTTTTGGTTGTACAATTATTGAGATGGCTACAGGATTAGTTCCTTGGTGTGAGATCAATGATCCTGTTTCTGCTCTGTATAGAATTGGTTATTCAGGGGATATGCCACAATTCCCAAACAATATGTCAAAGGATGCCACAGAATTTCTCGGTAAATGCTTGATGAAATGCCCGAACCAGCGTTG</genome_strand>
        <mrna_strand>TTTGATTAAGAAACAAGGAGGCTCGTTGAATGAATCTATGATCAAATTATACGCTCAGCAGATCTTACAGGGATTGGATTATCTTCACTCAATTGGGATTGTGCATTGTGATGTGAAAGGGCAGAACATTTTGGTTTGTGAAAATGGGAATGTTAAAATTGCTGATTTGGGATGTGCGAAATTGATGAAAGATGGAAAAAATTCTGGATTTTCCGGTACACCGGCTTTTATGGCACCTGAAGTTGCTCGAGGCGAAGAACAAGGATTTGCAGCTGATATTTGGGCTTTTGGTTGTACAATTATTGAGATGGCTACAGGATTAGTTCCTTGGTGTGAGATCAATGACCCTGTTTCTGCTCTGTATAGAATTGGTTATTCAGGGGATATGCCACAATTCCCAAACAATATGTCAAAGGATGCCACAGAATTTCTCGGTAAATGCTTGATGAAATGCCCGAATGAGCGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345668" ref_strand="+" ref_description="SGN-E345668 [cTOF-18-B23]">
      <seq>taaggcgaaaaaaaaagaaaaaagcaccagttcatcttcttcactccttagttcaatagagagaaattagcatcaacaatgctctctctgtcggattcacttcgaatttcttcacctttaagcgattctcgtctgagctttctatcgcaaactggaagcagaaccagttgccagtttaaatttgttcgcagccggcgggctcgagtttcgaggtgtagatgctcggcaaccgagggaccgacgccgaaacggcggaagcaaataccggagaagtacaagcagtcggaggaggagaaaggaatcgatcctgttggatttctcagcaaatacggcattactcacaaagctttcgctcaatttcttcgtgaaagatataaatcattgaaggacttgaaggatgaaatattgactcgtcatttcagtctcaaggagatgtctactgggtatgaattaatgggtatgcatcgcaacgtgcaacatcgagtggatttcttggaatgggctccaggtgctcgctactgtgctctgattggtgacttcaatggggtggtcaacaactcgtaactgtgccagagagggtcattttggtcatgacgattatgggtaattggtttattattcttgaagaaaaattacgtgaaggagaagaaccggataaattgtattttcaacagtacaattatgcggatgactatgataaaggtgacacgggtattaccatcgaggaaatctttaaaaagcaatggatgagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="34609" stop="37439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34909" g_stop="35279" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35280" i_stop="36048" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36049" g_stop="36120" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="443" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36121" i_stop="36271" i_length="151">
            <donor d_prob="0.244" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36272" g_stop="36336" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="508" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36337" i_stop="36895" i_length="559">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36896" g_stop="37139" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="753" r_length="245" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E345668" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34909" e_stop="35279"/>
          <exon e_start="36049" e_stop="36120"/>
          <exon e_start="36272" e_stop="36336"/>
          <exon e_start="36896" e_stop="37139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGCGAAAAAAAAAGAAAAAAGCACCAGTTCATCTTCTTCACTCCTTAGTTCAATAGAGAGAAATTAGCATCAACAATGCTCTCTCTGTCGGATTCACTTCGAATTTCTTCACCTTTAAGCGATTCTCGTCTGAGCTTTCTATCGCAAACTGGAAGCAGAACCAGTTGCCAGTTTAAATTTGTTCGCAGCCGGCGGGCTCGAGTTTCGAGGTGTAGATGCTCGGCAACCGAGGGACCGACGCCGAAACGGCGGAAGCAAATACCGGAGAAGTACAAGCAGTCGGAGGAGGAGAAAGGAATCGATCCTGTTGGATTTCTCAGCAAATACGGCATTACTCACAAAGCTTTCGCTCAATTTCTTCGTGAAAGGTGATTTTACATTGCCTTAAATTGTGTTATGTACTGTGTATTGTTATGCTCTTAAAGAGGGAGAGAGATGAGAATTCTATGAGTATTCATAATTCAAAATATCTCTTATTACAATTTGAGCTACTTATACAGTGGTCATTTGCACTGAATTTGATGAAATAAACTAAAATGACTAAAAGTTTTGAACATAAATTAGCTGCTATAACTTCACAACTAGATTCAATATGGACTAACATATGCCTCCTTCTAGAAAATGTCCTTGTCCTAAAGGACGGTAACTGTGAGCGATCAACTGTCGTTAGAGTTTGAATAGGAATTCTACACAATCAGCAATTATAAGAGTTTGTAATATTTTCCTTAGTTCTTCATGCAGTAGGAGTTGTTGTACCCTGTGAACAAATGGACCTTGGCTTTTACTCAGCTCAAAAAGGCCAAAAGCCAGCTTAGCTCATGAGGGGAGACTTTCAGTATTGAACTGAGAACAACACCTGTAACTTCACAGAACAGAACTAACAGTATTAAATTGAGAATAACTCCGATAATTTCACAACTGATTTTTGTCAATATTCCAACTGTTTCACTCTTCCTATTTTGCACATGATATATTTCTATGATTTTCTTTTTGACTTTCTGGAAGCCTCGTTAAGAGAATATTACTGAGCAGCAACTATTTTGAGTATCCTTGGACTGTTCCCCCTGTTTGATTTTTGAATCATTTGATATGCAACATTTTCAGGGTGTTTCATTCTTTTACCATTCTGTTTTGCAGATATAAATCATTGAAGGACTTGAAGGATGAAATATTGACTCGTCATTTCAGTCTCAAGGAGATGTCTACTGGGTTAGTTTGTGCGCAAATTTCTTTTGTCGACACCTGCGTTCCTCTCTCCTCTTTGTCTTTGTGACCGAGTATCATTGTGTAACTATTTGCTAATAGTATCATATAATGCATCTTGATTAGCTTTGACTGATTCTAGATGTCTATTTTACAGGTATGAATTAATGGGTATGCATCGCAACGTGCAACATCGAGTGGATTTCTTGGAATGGGCTCCAGGTTCAAATCCATACATGATTTTGTCATCTTAATATGTTTTTTTATATATATCAGAATTTATCTTCTAAATGTGTTTTAGTATATCAGAAATTTATCTTCTTAATGTTAATTTCTTTGTATAAATTCACGCTCCATTATGATATGACCATTTGGTGCTTATTTTTAGTGACATTAGCAATTGTGCAAATACTTAATATATAAACTCCATCAACGTTTCAAACTTCATCCATCCACTACATGACATTTTGAAAGTGGCTCACTATTTGGTATCTTCTGATTTTTATTATCGCCTTAAAAGTTCTCTATCCATCCAATTCACTTAGTTTCACGGTAGGACTATGGTGAGGTATCTCTGTGGAAAAAGACTTGATAATATATTGATTTTTAATTCCAACTCTGAGGTTTTATGCAAGTTAATGTAACTCTTTGTGTATCGTAAGTTGTGTGACACAATTGGATGGGATGGAGGAGTGGATTTAGCACTTGATGGGCAGCAATCGTTTCTTTGTTTTTATTTCCTTTTATAGTTTTGAATACAAGTGTCAATATGTTGCAACAGGTGCTCGCTACTGTGCTCTGATTGGTGACTTCAAT-GGGTGGTCAACAACTCGTAACTGTGCCAGAGAGGGTCATTTTGGTCATGACGATTATGGGT-ATTGGTTTATTATTCTTGAAGATAAATTACGTGAAGGAGAAGAACCGGATAAATTGTATTTTCAACAGTACAATTATGCGGATGACTATGATAAAGGTGACACGGGTATTACCATCGAGGAAATCTTTAAAAAAGCAAATGATGAGTA</genome_strand>
        <mrna_strand>TAAGGCGAAAAAAAAAGAAAAAAGCACCAGTTCATCTTCTTCACTCCTTAGTTCAATAGAGAGAAATTAGCATCAACAATGCTCTCTCTGTCGGATTCACTTCGAATTTCTTCACCTTTAAGCGATTCTCGTCTGAGCTTTCTATCGCAAACTGGAAGCAGAACCAGTTGCCAGTTTAAATTTGTTCGCAGCCGGCGGGCTCGAGTTTCGAGGTGTAGATGCTCGGCAACCGAGGGACCGACGCCGAAACGGCGGAAGCAAATACCGGAGAAGTACAAGCAGTCGGAGGAGGAGAAAGGAATCGATCCTGTTGGATTTCTCAGCAAATACGGCATTACTCACAAAGCTTTCGCTCAATTTCTTCGTGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAAATCATTGAAGGACTTGAAGGATGAAATATTGACTCGTCATTTCAGTCTCAAGGAGATGTCTACTGG.......................................................................................................................................................GTATGAATTAATGGGTATGCATCGCAACGTGCAACATCGAGTGGATTTCTTGGAATGGGCTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCGCTACTGTGCTCTGATTGGTGACTTCAATGGGGTGGTCAACAACTCGTAACTGTGCCAGAGAGGGTCATTTTGGTCATGACGATTATGGGTAATTGGTTTATTATTCTTGAAGAAAAATTACGTGAAGGAGAAGAACCGGATAAATTGTATTTTCAACAGTACAATTATGCGGATGACTATGATAAAGGTGACACGGGTATTACCATCGAGGAAATCTTT-AAAAAGCAATGGATGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345579" ref_strand="+" ref_description="SGN-E345579 [cTOF-18-A17]">
      <seq>gcaagtcagacaccattttcactgttattgtactactaaatctaatatactatttttgttgcattttttctatgttgatggaagttctaattaggtggagttctcttcagtaactcggtaaaagaactgtatctgatttaatgttttcagcacttctatatcatatgatttccttttggatcctgagttctgtatttaccgcataacaaggtaaacgtggacaccacaaattctggggcacacggatgttcaaatatggagatcttgatgtcctgcactttcttctttcaaatctgaactgatgggtggaggagtatcatgtcgatggcttccattttcattcgctctcgtccatgttgtatacgcatagaggattagcttcatttactggtgacatggatgaatactgtaaccaatatgttgacaaggaggccttattgtacctcatattagcaaatgaagtactacatgctcttcatcctaatgtgatcacgattgctgaggatgcaactctgtatcctgaactctgcgatccaacttctcaaggtggactgcgctttgattattttaccaatctttctgcctcagagatgtggcttgcattacttgaaatactcctgatcatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="41986" stop="46205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42286" g_stop="42586" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42587" i_stop="44507" i_length="1921">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44508" g_stop="44609" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="403" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44610" i_stop="44920" i_length="311">
            <donor d_prob="0.943" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44921" g_stop="45023" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="506" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45024" i_stop="45780" i_length="757">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45781" g_stop="45905" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="630" r_length="124" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E345579" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42286" e_stop="42586"/>
          <exon e_start="44508" e_stop="44609"/>
          <exon e_start="44921" e_stop="45023"/>
          <exon e_start="45781" e_stop="45905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTCAGACACCATTTTCACTGTTATTGTACTAGTAAATCTAATATACTATTTTTGTTGCATTTTTTCTATGTTGATGGAAGTTCTAATTAGGTGGAGTTCTCTTCAGTAACTTGGTAAAAGAACTGTATCTGATTTAATGTTTTCAGTACTTCTATATCATATGATTTCCTTTTGGATCCTGAGTTCTGTATTTACCGCATAACAAGGTAAACGTGGACACCACAAATTCTGGGGCACACGGATGTTCAAATATGGAGATCTTGATGTCCTGCACTTTCTTCTTTCAAATCTGAACTGGTGAGTTTATTGTTATATGGTTTCCATCCTATGCATGCTATTCTCTCAGTTTCATTGCTAGTTTTAAGTTTTGTTAGAAGTCGAAGGTTTGGCACCTGATAAATGTTGCTGGTTGTGCAATAAATGCACCACCATCGTTTAATTATTAAGTTCATGCTATATTTTATTGTACTTTACACCTATATGTAGGTTTATGTTGTAGTTCATTTGTATCAAGTGGGAAATACAAAATAAGTCCTCCCTCAATTTCACAATGTATCAGAGTAGATTCACTCTTGGTAAAATTCTAAATTGCTTCTGCTCACTGGCATGCGTCCTCTTGCCTCTTTCCCAGATGAAGCCCATTTTTATTTATCAAAGTGAAATTGTAGACACTTGTCCTCTCCATCCCTTTCACATGTTCTGTTCAATGATCCTCATTCGTGTCACATTAAGCTAGAACAGGAACCACTCCTCTCAAAGAAGCTCCATTGTCCCCCAGCCCCCCCGGTAGAAAAGAAAAAGAAGAAAGAAAATTTTGCTTTAAGTAAGCAGAGATGAGAGATTTGGCACCTTGTGAAGAAAATTTGTAAGCTGAGAATTCATCTACCAACCTAGTGGATGTGAACCTGTTTGTCAACAGTAAGTCTGTTAGAGTGTCATCGCCTTTTTGATGTTTTTTTCTTGAGATGGCAACAACTTGTATTAAAATTAAAAGAGACTGTGAAGCCATAATTACAGAGTGTGAACTAACAGTAAGCTAGGCAAAAATTATATTGCACTACAGAGGCTCTAAAACTTGCATTAGGGCCTCAGTGTCACCTATGTACGTTTGTTTACACCAAAAATTAAAAAGCACAATACAATTTAGCTTTATCTTCTGGATTGAGTCTCTCTTTCCTGCAAAACATCTAAGATTTCTTTCCCTCCAGATTGTCCACCATATGCAGCCTGGGATCATATTCCATCTTTTTTTTTAGCTTTTGTGCTTCACCTTCTGTTCCAGCTGGAAAGCATGTCAAGGTCATTGACACTGACCAGCTCAAACCAATCATAGCAAGGAAGACGTCCCAAAGTTGTGTATACTTTCCAAATGAGTGGCAAATAAAGCAAAGCTGTATTCCCCTTCAGTAGCCTGTCCTGTGTCAAACAAGCTTTCTCGACTACCAGCCAAACAAATCAAGCCACCTTTTATGTGATCTCAGCTCTCCAAAAGTGCTTCCAAGGCCATAAGAAGGTCAGCTTGTTATCAAGGTTCAAACTGTGATAAGCTGTTTTGACTGAAAAAATGCCTGTGTTATCCACCCCAACCTGTCTTGAGGTTGAGAAGTTCCAATGAGCTGATTGATGATGTTTAGGAACTCAGCAAATCTGTCCAAATCTTAGCCTATAACTTAAACTCCATACCTGATTGCTCGAAGCCCTGCCTCGAAAAAGTCAGGACTTTTGGGCAGATTCCAGTATCCGACCCATCTCTTTCTGCCGATTCCCCGGGTTGTCGGAATCTCTTACCTTTTTTTCCAGGCCTGTTCGGACATACGCTTCCCGCGGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTTCAGTAATGCCAGCCCTTTGTTGCTGGTTTAGAGAAAAGATATCAGGGTATGAGCTTGAGAGGGCCATTACTAGCCAATTGGCAGTTGGCAGTATGTATGTTTTCTTCTTAGTCAAGTCTCATAGATCCACGTTCACACGGTTGATGCATCAGCGTGAGCGATTTCTGTATGAGAACAAACATCTTTTTGAAACGAAATGCTCTCACCTAACAGACATGATCGTGCAAGAAACTATTTTCTTAACATGTTGCTTATACAATGGTATTTTTCAGGTGGGTGGAGGAGTATCATGTCGATGGCTTCCATTTTCATTCGCTCTCGTCCATGTTGTATACGCATAGTGGATTTGCTTCATTTACTGGTGACATGGATGAGTAAGCATCAAAAGTACACTTGTGTCATGTTAATTGTTCATGCGTTATTTACTTATTAAAAATGTTTACACATTGTTCACCAATGATACATATTTAAGATTCACATATTTGCAGTCTTTTAACTGGATTTTGGTATCTATCTTGATTAGGAAGTGCTAGAGATTGTAATGTGGATTAAAAAACAAAGCTAGAAGGACCTCAAATTTGAAAACTATGTGACTAGAATGTATGTTAAACATTGGAAAATTATGAGCATCTATCTTTCTGTTGGTTGGTCTTTCTTCGACAATCTAAAACTTTTGTTGTTGCAGATACTGTAACCAATATGTTGACAAGGAGGCCTTATTGTACCTCATATTAGCAAATGAAGTACTACATGCTCTTCATCCTAATGTGATCACGATTGCTGAGGATGTAAGTGAACTATTTCAATTCTCTTGAATTGTTCATCGCTTTCCTTGGATGCTTTCGAGGAAGTACAAATCCTTTTTATTGAACTTAGTTCTGCTGAGTATACCTTATGATACTTTAAGATATCTTTCGAAAATAGGATTTCTTCTTCTTGTGCAAGTTTATTTCTCAGTCTTGTACTACTATATATGTCAGATTTCCTTTCTATTCACATGCACCTTGTAGTTTGAGACCTTTGGGTTACTTTTGGTTGGACTTTGGAGTAATGGAGAAATAATCTCCACATAAAACTCAACATTGTTTTGATACAATGTTATGTTTGATTTTTTTGTTCCACGTAAAACTTAGCATAATCTGTTACATGTTTGGTTTCAAATTTTCCTTTGTGCATAACTAATACTCACATAAGTTGTGTGCAATCTATACATTATTTTATATATATGTGGGATAGAATGTGGAATAAGAATGCAGTGGTTAGTAATACATGGATTAGAACAAAATGAAAAGAATAAACCTTCATGCAGTAACTAATATTTTTTATTTTAAAAAATAAAAACATATTTTAAAAAATATATTATATAATAAATTTTAATACAACAATCAAATATCCAATAGCATGTAATCGTTAAATTACAATCTTTTCATTATTAATCCTTGAATTACATTCTGTGTATCACTAATCCTGCATTACAAACCCTACATTTCTAATTTCTGCAGACCCCCAACTGTCATTTGATTAAGATTTCTTTCTGTTACATAGGCAACTCTGTATCCTGGACTCTGCGATCCAACTTCTCAAGGTGGACTGGGCTTTGATTATTTTACCAATCTTTCTGCCTCAGAGATGTGGCTTGCATTACTTGAAAATACTCCTGATCATGAATG</genome_strand>
        <mrna_strand>GCAAGTCAGACACCATTTTCACTGTTATTGTACTACTAAATCTAATATACTATTTTTGTTGCATTTTTTCTATGTTGATGGAAGTTCTAATTAGGTGGAGTTCTCTTCAGTAACTCGGTAAAAGAACTGTATCTGATTTAATGTTTTCAGCACTTCTATATCATATGATTTCCTTTTGGATCCTGAGTTCTGTATTTACCGCATAACAAGGTAAACGTGGACACCACAAATTCTGGGGCACACGGATGTTCAAATATGGAGATCTTGATGTCCTGCACTTTCTTCTTTCAAATCTGAACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTGGAGGAGTATCATGTCGATGGCTTCCATTTTCATTCGCTCTCGTCCATGTTGTATACGCATAGAGGATTAGCTTCATTTACTGGTGACATGGATGA.......................................................................................................................................................................................................................................................................................................................ATACTGTAACCAATATGTTGACAAGGAGGCCTTATTGTACCTCATATTAGCAAATGAAGTACTACATGCTCTTCATCCTAATGTGATCACGATTGCTGAGGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTCTGTATCCTGAACTCTGCGATCCAACTTCTCAAGGTGGACTGCGCTTTGATTATTTTACCAATCTTTCTGCCTCAGAGATGTGGCTTGCATTACTTG-AAATACTCCTGATCATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335180" ref_strand="+" ref_description="SGN-E335180 [cTOE-1-P21]">
      <seq>tccatttctggaggtcgttccttcgcagaaatactgattggtaactctttggggaaatcttccatatcacaagagtcattgcttagaggctgctcattacacaagatgatcagattaattacatctacaattggtggtcatgcatacctaaacttcatgggcaatgaatttgggcacccaaagagagtagagtttccaatgtcaagcaacaatttctccttttcactggctaaccgtcgctgggatctattggaagatgatgtacattatcgattgttctcatttgataaggatatgatggacttggataaaaatgggagaattctgtccagaggtcttgccaacattcaccatgtcaatgatactaccatggtgatatcttacttgagaggtcccaatctctttgtgttcaactttcatcctgtcaattcatatgaaagatacattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="45919" stop="48687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46219" g_stop="46323" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46324" i_stop="46925" i_length="602">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.526" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46926" g_stop="47003" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="183" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47004" i_stop="47094" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.635" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47095" g_stop="47202" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="291" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47203" i_stop="48054" i_length="852">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48055" g_stop="48135" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="372" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48136" i_stop="48310" i_length="175">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48311" g_stop="48387" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="449" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E335180" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46219" e_stop="46323"/>
          <exon e_start="46926" e_stop="47003"/>
          <exon e_start="47095" e_stop="47202"/>
          <exon e_start="48055" e_stop="48135"/>
          <exon e_start="48311" e_stop="48387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTTCTGGAGGTCGTTCCTTCGCAGAAATACTGATTGGTAACTCTTTGGGGAAATCTTCCATATCACAAGAGTCATTGCTTAGAGGCTGCTCATTACACAAGGTAATTTCTTTACTTGTGCTTTACACTTTACACTTCATGTAGAAGGTGAATATCTGGTACTACCTAGAGACTGTTGTTACACAAGGGAAACTACTTGACATTTCTTGGTTGATCAGGTCTGAATCTTATGAACAGCCACCCTTCCCTCGTCTCTTCAATATATTGGCTCCCTCTATTTTGGTAATCACTGGACCATGCTAAAGCAGGATGCTTTGAGCAGCAGACTGCCTTTTTTCCCCATGTTTACCTCTTATTTGAGGTCAAATTAACCTCTGTACGGTTGTCGTCGTTCTTGATGTTGCAGTCAATAAGTAGGGGCATTCAGGTGAAACTTGTATGTGCTTCAAGAAGGAACTAGCCTTTAAATATTTTCTTCTTCTGGGGAAATGGTTCAGCTGATGAATCTGCTTGCATTGATTTTCTGGTTAATAGATTATTCCTTCAGATAAATTCCTTACACAAGGGAATGAATTTGTCTTAAGGATCCACCAGTCTATTTCCCTCTTTTCAGTAGAATTTTAGATCAGTTACCTGCTTGTTCTGTGATATTCCCATGCATTTGGGTTTGTCTACTTATGGTTGGATCTTCTTGTATTAAATAGATGATCAGATTAATTACATCTACAATTGGTGGTCATGCATACCTAAACTTCATGGGCAATGAATTTGGGCACCCAAAGGTGAGTAGTTGCTTTCTGCATATATGATTTGTGGACGTTTACAACTATACTACAGTAGATTTAATACCAAATGACCTCTTTTCTGCAACAGAGAGTAGAGTTTCCAATGTCAAGCAACAATTTCTCCTTTTCACTGGCTAACCGTCGCTGGGATCTATTGGAAGATGATGTACATTATCGATTGTTCTCATTTGATAAGGTGACCTCCGAACTTCTAATTATGTAAAATGCGCTCTGCTGCCTCTCTTTAAATATACTTGTATATATACACACACGTGTGTGTGTGTAGAATCTCCTTATACGACTGTTGTATATTTGTTCCATTTTCATACATCATTGTTGATTTTCTATTAATCCTGATAATGTCTTTCTGATACTGTGTGGTGATAGTACACCATACGAGCAATGCAAGGTAGGCCTAGTTGTTGTGCACTAGTAAATGACCGTCACTAAATTGATCTGCCCTTTGAGTGTTACTTTTTTTTTTTTTTATATATATTATGCTTGATATTAGATGTTGCTTTTACTCCTTTTTTTCCATCAAGGAGTAAAGATCGTTTGGCTTCCACACATCACATCAACCCTCTTTTGATATATTCTGGGTACCCGTTCTGATATTCTGTGCTGAAAAAAACAGTGTAGTCTTTAGTAGATATTTTGTTGGAAACCACATATTGCTTGCTTCCCTTATTTCCCATCAAGGGGTATATATAGTTAGGCTTCCACATGCCATAGCAACCTTTTCTGATATTATGTGGAAACAATATACTGTATGGTCAATAAAGGTAGCTCACATAGTTATGCTTTAATAAATGAGGTTCATGTGCTATCCTGTCTTTATTGTTTTATTTCATACTTGAATGGTATTTACCACCTCTTCGTAACCATTATTTTTTTCTTTTTAGTTGGTTGATGAGATAGCTTGTGTTTAATTTAGTCATAGGCATATGTTATGCTTCTCTTTCTTTCGCTATGCTGTAAATTGGAATAGTAGTTCTGCAACCAAAGGGAAAAAGAAAGAAGAGAGTTGTGACTTCTTTTTCGTTTTCAGGATATGATGGACTTGGATAAAAATGGGAGAATTCTGTCCAGAGGTCTTGCCAACATTCACCATGTCAATGATACTACCATGGTACAAACGCCTTCTCTCTTTTATTTGATATTGGGGTTAGTTGTCTGTGACCCTTTGGGGGGGGGGGGGACATCATAACAGTTGCTTGCTTGTGTGCTAACATTATCAATATAGCTAGTTTCTATGGCAAACATTTATTTCTTGAATATAAAGAGTGAAATTATTTTTGGAACAGGTGATATCTTACTTGAGAGGTCCCAATCTCTTTGTGTTCAACTTTCATCCTGTCAATTCATATGAAAGATACATTAT</genome_strand>
        <mrna_strand>TCCATTTCTGGAGGTCGTTCCTTCGCAGAAATACTGATTGGTAACTCTTTGGGGAAATCTTCCATATCACAAGAGTCATTGCTTAGAGGCTGCTCATTACACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAGATTAATTACATCTACAATTGGTGGTCATGCATACCTAAACTTCATGGGCAATGAATTTGGGCACCCAAAG...........................................................................................AGAGTAGAGTTTCCAATGTCAAGCAACAATTTCTCCTTTTCACTGGCTAACCGTCGCTGGGATCTATTGGAAGATGATGTACATTATCGATTGTTCTCATTTGATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGATGGACTTGGATAAAAATGGGAGAATTCTGTCCAGAGGTCTTGCCAACATTCACCATGTCAATGATACTACCATG...............................................................................................................................................................................GTGATATCTTACTTGAGAGGTCCCAATCTCTTTGTGTTCAACTTTCATCCTGTCAATTCATATGAAAGATACATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345070" ref_strand="+" ref_description="SGN-E345070 [cTOF-22-C16]">
      <seq>gaagatgatgtacattatcgattgttctcatttgataaggatatgatggacttggataaaaatgggagaattctgtccagaggtcttgccaacattcaccatgtcaatgatactaccatggtgatatcttacttgagaggtcccaatctctttgtgttcaactttcatcctgtcaattcatatgaaagatacattataggtgttgaagaagctggagagtatcaagtcacattaaatacagatgaaaagaagtatggtggtagagcactacttggccacgatcagaatattcaaagaaccattagtagaagagctgatggaatgagattttgcttggaagtgcctctgccaagtagaagtgctcaggtctacaagttgacccgcgattctaagagcatgatcactctagtaatcaaagtgcctcatatgatggacacaaaaggaaaggttctacattgccctatactgatcaatattgtggcctttttgaggtgagtttctgtgattcttgagcacaggcttttggctagtcagttatcatgaacttttgccttcagcatccggatactctcttctcctgagcaatgacacttcgacgagaaaaaaactggcttgtcatgggggtcaaaagcatctgccagattaagatttcaagcctcaaggaaaactatcaccgctttaggatacacacattgacgagtaagctctgataccctttaaagtgccagtgtatataagagcattcaaattgatgagaacttcattttgcattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="46864" stop="50210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47164" g_stop="47202" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47203" i_stop="48054" i_length="852">
            <donor d_prob="0.947" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48055" g_stop="48135" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="120" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48136" i_stop="48310" i_length="175">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48311" g_stop="48415" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="225" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48416" i_stop="49003" i_length="588">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49004" g_stop="49089" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="311" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49090" i_stop="49256" i_length="167">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49257" g_stop="49311" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="366" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49312" i_stop="49386" i_length="75">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49387" g_stop="49466" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="447" r_length="81" r_score="0.962"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49467" i_stop="49581" i_length="115">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49582" g_stop="49910" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="775" r_length="328" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E345070" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47164" e_stop="47202"/>
          <exon e_start="48055" e_stop="48135"/>
          <exon e_start="48311" e_stop="48415"/>
          <exon e_start="49004" e_stop="49089"/>
          <exon e_start="49257" e_stop="49311"/>
          <exon e_start="49387" e_stop="49466"/>
          <exon e_start="49582" e_stop="49910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGATGTACATTATCGATTGTTCTCATTTGATAAGGTGACCTCCGAACTTCTAATTATGTAAAATGCGCTCTGCTGCCTCTCTTTAAATATACTTGTATATATACACACACGTGTGTGTGTGTAGAATCTCCTTATACGACTGTTGTATATTTGTTCCATTTTCATACATCATTGTTGATTTTCTATTAATCCTGATAATGTCTTTCTGATACTGTGTGGTGATAGTACACCATACGAGCAATGCAAGGTAGGCCTAGTTGTTGTGCACTAGTAAATGACCGTCACTAAATTGATCTGCCCTTTGAGTGTTACTTTTTTTTTTTTTTATATATATTATGCTTGATATTAGATGTTGCTTTTACTCCTTTTTTTCCATCAAGGAGTAAAGATCGTTTGGCTTCCACACATCACATCAACCCTCTTTTGATATATTCTGGGTACCCGTTCTGATATTCTGTGCTGAAAAAAACAGTGTAGTCTTTAGTAGATATTTTGTTGGAAACCACATATTGCTTGCTTCCCTTATTTCCCATCAAGGGGTATATATAGTTAGGCTTCCACATGCCATAGCAACCTTTTCTGATATTATGTGGAAACAATATACTGTATGGTCAATAAAGGTAGCTCACATAGTTATGCTTTAATAAATGAGGTTCATGTGCTATCCTGTCTTTATTGTTTTATTTCATACTTGAATGGTATTTACCACCTCTTCGTAACCATTATTTTTTTCTTTTTAGTTGGTTGATGAGATAGCTTGTGTTTAATTTAGTCATAGGCATATGTTATGCTTCTCTTTCTTTCGCTATGCTGTAAATTGGAATAGTAGTTCTGCAACCAAAGGGAAAAAGAAAGAAGAGAGTTGTGACTTCTTTTTCGTTTTCAGGATATGATGGACTTGGATAAAAATGGGAGAATTCTGTCCAGAGGTCTTGCCAACATTCACCATGTCAATGATACTACCATGGTACAAACGCCTTCTCTCTTTTATTTGATATTGGGGTTAGTTGTCTGTGACCCTTTGGGGGGGGGGGGGACATCATAACAGTTGCTTGCTTGTGTGCTAACATTATCAATATAGCTAGTTTCTATGGCAAACATTTATTTCTTGAATATAAAGAGTGAAATTATTTTTGGAACAGGTGATATCTTACTTGAGAGGTCCCAATCTCTTTGTGTTCAACTTTCATCCTGTCAATTCATATGAAAGATACATTATAGGTGTTGAAGAAGCTGGAGAGTATCAAGTAAGTCTCATTTTATCCTTTTCTTGCTGAATGCCTGTCTAAAGTTCTTCTATATTTATCTCTCACTCCCACATAAACATGCGGTGAAGTGTGTAAAAAGGATCATCAACTTGGAATGTGTATGCAAGTTGAAAAGATTTATGTAGCTATTGTTTCTATCCCTACTTCTAGCCTGCCTCTGTAGTAAATTAACAGAATAACCCTAAATTCGATCTCTCTCTCAGTCCCGCATGAACATGAAGAAGAGTATTACTCCGTCCATTTCAATTTCTGTAAAACATATTTAACTAGGCACAGATTCGAGAAAGAAAGGAGTATGACTCTTGGAACTTATAGTCTTATAACATGCCATTATGCTATAACATTTGAAACTTGTGGTCCTAAGATGCTATATCAATTATGAGAAGCACAGTTGGCATATTATTGTTTACATAACCTATGTATTTTCTCAAGTCTCTAGCTATTGAAATTTCAGAGAATAGTACATCTATCGAGGAACACAATCAGCGTATCATTTTAGTACTTGATCTATGGATTTTATAACTTTACTGGCTATTTCTTACGCTATTGTTTGGTCAACTTTTATAGGTCACATTAAATACAGATGAAAAGAAGTATGGTGGTAGAGCACTACTTGGCCACGATCAGAATATTCAAAGAACCATTAGTAGAAGGTAACCAATCGCTTGCTTTCCTTTTTCACTTGTTTTTACATGACTCATAATTAGTCGCTTACTTTAAGTCCTCTACTTCTTCTAGGAAGATGAATTCCAATGTTCTTTTTTACATGATATCTGTATTAAACATCTATATAATTCATGTCTTAACATTTCCATTTCAGAGCTGATGGAATGAGATTTTGCTTGGAAGTGCCTCTGCCAAGTAGAAGTGCTCAGGTTTGATTTTTTTAAATTCATTTATCATCTGCCCATGACCGACGAATGCTTGATTAATTGGTTCAACTCATGCAGGTCTACAAGTTGACCCG-AATTCTAAGAGCATGATCACTCTAGTAATCAAAGTGCCTCATATGATGGACACAAAAGGAAAGGTACGTTCACACTATGTGTCAGTGTGACTCGGATACAAAACATGCATTGAAGCACCTTTGTGCTCATCTATTAAGCTTTTATAGCTTATTTAGGCTGTTTTCTAATCTTTAATAGGTTCTACATTGCCCTATACTGATCAATATTGTGGCCTTTTTGAGGTGAGTTTCTGTGATTCTTGAGCACAGGCTTTTGGCTAGTCAGTTATCATGAACTTTTGCCTTCAGCATCCGGATACTCTCTTCTCCTGAGCAATGACACTTCGACGAGAAAAAAACTGGCTTGTCATGGGGGTCAAAAGCATCTGCCAGATTAAGATTTCAAGCCTCAAGGAAAACTATCACCGCTTTAGGATACACACATTGACGAGTAAGCTCTGATACCTTTAAAGTTGCCAGTGTATATAAGAGCATTCAAATTGATGAGAACTTCAATTTTGCATTGGA</genome_strand>
        <mrna_strand>GAAGATGATGTACATTATCGATTGTTCTCATTTGATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGATGGACTTGGATAAAAATGGGAGAATTCTGTCCAGAGGTCTTGCCAACATTCACCATGTCAATGATACTACCATG...............................................................................................................................................................................GTGATATCTTACTTGAGAGGTCCCAATCTCTTTGTGTTCAACTTTCATCCTGTCAATTCATATGAAAGATACATTATAGGTGTTGAAGAAGCTGGAGAGTATCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACATTAAATACAGATGAAAAGAAGTATGGTGGTAGAGCACTACTTGGCCACGATCAGAATATTCAAAGAACCATTAGTAGAAG.......................................................................................................................................................................AGCTGATGGAATGAGATTTTGCTTGGAAGTGCCTCTGCCAAGTAGAAGTGCTCAG...........................................................................GTCTACAAGTTGACCCGCGATTCTAAGAGCATGATCACTCTAGTAATCAAAGTGCCTCATATGATGGACACAAAAGGAAAG...................................................................................................................GTTCTACATTGCCCTATACTGATCAATATTGTGGCCTTTTTGAGGTGAGTTTCTGTGATTCTTGAGCACAGGCTTTTGGCTAGTCAGTTATCATGAACTTTTGCCTTCAGCATCCGGATACTCTCTTCTCCTGAGCAATGACACTTCGACGAGAAAAAAACTGGCTTGTCATGGGGGTCAAAAGCATCTGCCAGATTAAGATTTCAAGCCTCAAGGAAAACTATCACCGCTTTAGGATACACACATTGACGAGTAAGCTCTGATACCCTTTAAAGTGCCAGTGTATATAAGAGCATTCAAATTGATGAGAACTTC-ATTTTGCATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713403" ref_strand="+" ref_description="SGN-E713403 [FB08CB08]">
      <seq>caccgctgtccacttttcagcaattagtagtgcaccgcagcacttcccgccgaccgccgcgaccagcagcagccagctagcggcagcgaccagtctagatacggttttcttctccaaacaatctttggttaagcatcgatgagttctcaggccgttacttcaagtgaggacatttttgactcatcgttgaatctagaggacattcattacaaagaaggctactcggtaggctatacggatggcctaaattctggtaaagatgaaggcaaacaggtaggactcaaaaagggttttgaagtaggcgaagaattgggtttttacaaaggttgtattgatgtatggaatgctgctatcttagtagagccaacctgtttctcatctcgagtgcagaaaagcatcaaacagatggatgaattgctcaataagtaccccttctctgacccagagaacgagtctgctaccgatattatcgactccctgagactgaaatttagagctatttgtgcaactctgaatattaaaccagagtatgatgggtaccccaaagcctctgggatcgataactccggtttctgattggtctaaattagtcacttcctttgtagacatataaatttgcatcaagttggtaaaagaactgtcattacatatatatcagtgttgaaaagattcatgccagatattatatgtatttgctggttttaaatatgtctgtgtgcggtcgtgtctatagatatctatctatatattgtagttccaggatgatttcataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="54653" stop="57490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54953" g_stop="55055" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55056" i_stop="56519" i_length="1464">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.752" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56520" g_stop="57201" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="785" r_length="682" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E713403" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54953" e_stop="55055"/>
          <exon e_start="56520" e_stop="57201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCGCTGTCCACTTTTCAGCAATTAGTAGTGCACCGCAGCACTTCCCGCCGACCGCCGCGACCAGCAGCAGCCAGCTAGCGGCAGCGACCAGTCTAGATACGGTATTTAATTTTTCTTTTTTGTTTTTTTTTTGTATTTTTTTTTCTTTCTGATTTGTGTTAATTGTGAATTATAAAAAAAAATTCATCATAAACAATTTCATTGTGTTTAGTGAGCATAGCTGATATTGAACTTTACAAATAAATTTGTATATTTTGGTTCTGCAAATTTATTCTGAATTTGTGTCCGCACTGCTTCGTTTTGCGAGAAAAATATACTTACACTTGGTTGTATTTTAAGAGGAATATAATGTTTGAATAGATTGTATTGTTATGCGTAAATTTCAACTAGGTATGGTGCACAATTACTATGAAAAAGGTAGAGTAAATAATAAAATTGAATTATTGAATAATAAAGTTTAAAAAAATATTAAGGTAGCAATACGATTACGTGAATAGAATTTTGAGAGACATAAATGTTGTATTTAAACTAACAATACAATGAGTAACAACCATCCAAACTAGGTGTTAATGTGGCCGGAATCATCGCGTAACGAGATCCTCCCCTATAATCTCTCTCCAAGCTCTCTTATAAATGAAGGATTATAATGTGAGAAAACTTCGATTTTCAGCTCAATTCCTTTTAAAGGTCTAAACTTTTTATATCTTAAGGACTTAACTAAACTGATTTTTTAATGACTTTAACTTCTAATTAAGATCATAACAAAGTTCACAATATGATTATGATGACTTCTTAATTTGTTTTATTGTAGAAGTATGCTATTCTAACAAACACCAGTAGTTAAAAGTTGAGTAGGTAGCGATTTGTTTTGAATGAAGCTTCATGCTTTTATTAAGTTTTGAATGTTGATTTATAAAAAAGATAGAAAAAAGAATGCTATATACATTGTACATTTTGTGTTTTAATCCAAGCGTTGTGTATCCTTATATCGAGTTTGTATACAACCAAGGAAACAACCATTGTCGTGTATCTTTGGCTAGCACAACTCCATTCTCTCTTATTTCTGTGGTCTATTTTGTAACGAGTAGTATGACTCGGAGAGCCTGGAAAGAAGTCAATTGAAATGTATTCACATATAGAGCTTGTTGAGAAAGAAAGTATCTTTTTTCTCTTGTGTGGACGTCTGATTTATTTTTTTCGGTTGAACGTTGCCAAAACCTATTCTTTTGGTTAAATATTGAGGGTGTTATTGATTTGCTTATTTGGTTTTCTGCTTCTGATACTATTCTAATGTATGTAGTGATTTAGTGGTATTTGCTAAGTTAGCCTTTGACATCTCTTTGCTGTTGCTATTCCTTTTTTAATTTGCTCGGAAAGTAATGCTTTTCTTTTTCAATCGAAACAGTATATCTTGCTAGAAAAATTTGGCCATTCAACCAAAATATATTGGATTGAATTATTAGTTTGTGTTATAATTGGAAGGGTTTTGTGTTGAGTCTTGCCAAGTTTTGATCCCATTACCTTGTGTCAAGTAGTAGTTAACAACTAACGTCTCACCGTTTCAGGTTTTCTTCTCCAAACAATCTTTGGTTAAGCATCGATGAGTTCTCAGGCCGTTACTTCAAGTGAGGACATTTTTGACTCATCGTTGAATCTAGAGGACATTCATTACAAAGAAGGCTACTCGGTAGGCTATACGGATGGCCTAAATTCTGGTAAAGATGAAGGCAAACAGGTAGGACTCAAAAAGGGTTTTGAAGTAGGCGAAGAATTGGGTTTTTACAAAGGTTGTATTGATGTATGGAATGCTGCTATCTTAGTAGAGCCAACCTGTTTCTCATCTCGAGTGCAGAAAAGCATCAAACAGATGGATGAATTGCTCAATAAGTACCCCTTCTCTGACCCAGAGAACGAGTCTGCTACCGATATTATCGACTCCCTGAGACTGAAATTTAGAGCTATTTGTGCAACTCTGAATATTAAACCAGAGTATGATGGGTACCCCAAAGCCTCTGGGATCGATAACTCCGGTTTCTGATTGGTCTAAATTAGTCACTTCCTTTGTAGACATATAAATTTGCATCAAGTTGGTAAAAGAACTGTCATTACATATATATCAGTGTTGAAAAGATTCATGCCAGATATTATATGTATTTGCTGGTTTTAAATATGTCTGTGTGCGGTCGTGTCTATAGATATCTATCTATATATTGTAGTTCCAGGATGATTTCATAGATGATCACTCAA</genome_strand>
        <mrna_strand>CACCGCTGTCCACTTTTCAGCAATTAGTAGTGCACCGCAGCACTTCCCGCCGACCGCCGCGACCAGCAGCAGCCAGCTAGCGGCAGCGACCAGTCTAGATACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTTCTCCAAACAATCTTTGGTTAAGCATCGATGAGTTCTCAGGCCGTTACTTCAAGTGAGGACATTTTTGACTCATCGTTGAATCTAGAGGACATTCATTACAAAGAAGGCTACTCGGTAGGCTATACGGATGGCCTAAATTCTGGTAAAGATGAAGGCAAACAGGTAGGACTCAAAAAGGGTTTTGAAGTAGGCGAAGAATTGGGTTTTTACAAAGGTTGTATTGATGTATGGAATGCTGCTATCTTAGTAGAGCCAACCTGTTTCTCATCTCGAGTGCAGAAAAGCATCAAACAGATGGATGAATTGCTCAATAAGTACCCCTTCTCTGACCCAGAGAACGAGTCTGCTACCGATATTATCGACTCCCTGAGACTGAAATTTAGAGCTATTTGTGCAACTCTGAATATTAAACCAGAGTATGATGGGTACCCCAAAGCCTCTGGGATCGATAACTCCGGTTTCTGATTGGTCTAAATTAGTCACTTCCTTTGTAGACATATAAATTTGCATCAAGTTGGTAAAAGAACTGTCATTACATATATATCAGTGTTGAAAAGATTCATGCCAGATATTATATGTATTTGCTGGTTTTAAATATGTCTGTGTGCGGTCGTGTCTATAGATATCTATCTATATATTGTAGTTCCAGGATGATTTCATAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356689" ref_strand="+" ref_description="SGN-E356689 [cTOS-21-I5]">
      <seq>ccaggtgttattggatgtcttcaagccttagaggccataaaggttgctagcttggttggagaaccactctccggaagaatgcttcttttggatgcgctgtcaggccggttccgtaatgtcaaactacgtggaaggtcattgcagtgcgaagcttgtggagatgatgcagtactgacaaggcagacattttcggagtttgattatgaaaagtttactcaaactccattatccacggttccattgaagttgaactttctttcagcagatgatcgaattagcaccaaagagtacaatgagaaagtgaggaaaggagacgcacatatattagtggatgttcgaccaagtcatcactataagattgtttcacttcccaactctatgaacatacctctatcgacgttggaaggtagattgcctgaaatatctgctgccttggaaaaagaggtaaataaagagaatggttcaaatacttctctgtttgtaatatgcagaagaggcaatgattcacaagttgctgttgaattgcttcacaaattgggttttacttcagcaaaggatataatangggggctagagtcatggactcacaacgtggatccaaagntccctacctactaactatataccctataaattgtcatttattcttcacttaaattttttccccctgaatcaaaagcttaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="59085" stop="57197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58785" g_stop="58669" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58668" i_stop="58167" i_length="502">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58166" g_stop="58050" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="234" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58049" i_stop="57951" i_length="99">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57950" g_stop="57497" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="687" r_length="453" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E356689" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58785" e_stop="58669"/>
          <exon e_start="58166" e_stop="58050"/>
          <exon e_start="57950" e_stop="57497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGTGTTATTGGATGTCTTCAAGCCTTAGAGGCCATAAAGGTTGCTAGCTTGGTTGGAGAACCACTCTCCGGAAGAATGCTTCTTTTGGATGCGCTGTCAGGCCGGTTCCGTAATGTGTGTTTGATATTCTAATTTCTCATACTTGCTGTCACTTTGTTCTTTATTCTTTCTGAGCAGAGGATATGTTGCAGTCTTTTTTTGCATTCTGAAATAAGCAGTGAGCAAAAAATGAAATTAGGTAAAACTAAGGCGAGGTATAATAATAATTCTTTTGATAAATCCTTTTGGAATTAGCCAATAAACTTTTAAATCGATAGTAGGATGTGAAAAAAAGTAAATTACAGGGCAGATGATATCTGCAATCGTTATTGAAAAAAATAAAAGATTTTTCGAAGTAGCTAGCCCACAAGTACTTGCAATACATGTGTTTTACATCTATTCTATACATGTCTTGTACTAGTAATTAATTAGGACTTCCACAATCTCTTGCACATGTATCAATTTATTTGGAATATCTTCTTTCAATATTTATTTATTTTCCCATGTTGCTCTACCTATCTTATTTTTCTTTTGGCATTGTCAACATCTGAAATCATCATCTCTCTCACAAGTTTAGGTCAAACTACGTGGAAGGTCATTGCAGTGCGAAGCTTGTGGAGATGATGCAGTACTGACAAGGCAGACATTTTCGGAGTTTGATTATGAAAAGTTTACTCAAACTCCATTATCCACGGTGCATTTCATTTTCACAACTTCTCAATTGTATTTAAAACTGTATGCAAATGAGGACGTAGCTTAGAACTCATCATCCCGTAACTCATGATGGTTTCAGGTTCCATTGAAGTTGAACTTTCTTTCAGCAGATGATCGAATTAGCACCAAAGAGTACAATGAGAAAGTGAGGAAAGGAGACGCACATATATTAGTGGATGTTCGACCAAGTCATCACTATAAGATTGTTTCACTTCCCAACTCTATGAACATACCTCTATCGACGTTGGAAGGTAGATTGCCTGAAATATCTGCTGCCTTGGAAAAAGAGGTAAATAAAGAGAATGGTTCAAATACTTCTCTGTTTGTAATATGCAGAAGAGGCAATGATTCACAAGTTGCTGTTGAATTGCTTCACAAATTGGGTTTTACTTCAGCAAAGGATATAATAGGGGGCTTAGAGTCATGGACTCACAACGTGGATCCAAAGTTCCCTACCTACTAACTATATACCTATAAAATTGTCATTTATTCTTCACTTAAATTTTTTCCCCCTTGAATCAAAAGCTTAATTT</genome_strand>
        <mrna_strand>CCAGGTGTTATTGGATGTCTTCAAGCCTTAGAGGCCATAAAGGTTGCTAGCTTGGTTGGAGAACCACTCTCCGGAAGAATGCTTCTTTTGGATGCGCTGTCAGGCCGGTTCCGTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAACTACGTGGAAGGTCATTGCAGTGCGAAGCTTGTGGAGATGATGCAGTACTGACAAGGCAGACATTTTCGGAGTTTGATTATGAAAAGTTTACTCAAACTCCATTATCCACG...................................................................................................GTTCCATTGAAGTTGAACTTTCTTTCAGCAGATGATCGAATTAGCACCAAAGAGTACAATGAGAAAGTGAGGAAAGGAGACGCACATATATTAGTGGATGTTCGACCAAGTCATCACTATAAGATTGTTTCACTTCCCAACTCTATGAACATACCTCTATCGACGTTGGAAGGTAGATTGCCTGAAATATCTGCTGCCTTGGAAAAAGAGGTAAATAAAGAGAATGGTTCAAATACTTCTCTGTTTGTAATATGCAGAAGAGGCAATGATTCACAAGTTGCTGTTGAATTGCTTCACAAATTGGGTTTTACTTCAGCAAAGGATATAATANGGGGGCTAGAGTCATGGACTCACAACGTGGATCCAAAGNTCCCTACCTACTAACTATATACCCTATAAATTGTCATTTATTCTTCACTTAAATTTTTTCCCCC-TGAATCAAAAGCTTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352615" ref_strand="+" ref_description="SGN-E352615 [cTOS-9-P6]">
      <seq>ccaggtgttattggatgtcttcaagccttagaggccataaaggttgctagcttggttggagaaccactctccggaagaatgcttcttttggatgcgctgtcaggccggttccgtaatgtcaaactacgtggaaggtcattgcagtgcgaagcttgtggagatgatgcagtactgacaaggcagacattttcggagtttgattatgaaaagtttactcaaactccattatccacggttccattgaagttgaactttctttcagcagatgatcgaattagcaccaaagagtacaatgagaaagtgaggaaaggagacgcacatatattagtggatgttcgaccaagtcatcactataagattgtttcacttcccaactctatgaacatacctctatcgacgttggaaggtagattgcctgaaatatctgctgccttggaaaaagaggtaaataaagagaatggttcaaatacttctctgtttgtaatatgcagaagaggcaatgattcacaagttgctgttgaattgcttcacaaattgggttttacttcagcaaaggatataatanggggcttagagtcatggactcacaacgtggatccaaagttccctacctactaactatatacctataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="59085" stop="57251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58785" g_stop="58669" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58668" i_stop="58167" i_length="502">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58166" g_stop="58050" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="234" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58049" i_stop="57951" i_length="99">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57950" g_stop="57551" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="634" r_length="400" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E352615" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58785" e_stop="58669"/>
          <exon e_start="58166" e_stop="58050"/>
          <exon e_start="57950" e_stop="57551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGTGTTATTGGATGTCTTCAAGCCTTAGAGGCCATAAAGGTTGCTAGCTTGGTTGGAGAACCACTCTCCGGAAGAATGCTTCTTTTGGATGCGCTGTCAGGCCGGTTCCGTAATGTGTGTTTGATATTCTAATTTCTCATACTTGCTGTCACTTTGTTCTTTATTCTTTCTGAGCAGAGGATATGTTGCAGTCTTTTTTTGCATTCTGAAATAAGCAGTGAGCAAAAAATGAAATTAGGTAAAACTAAGGCGAGGTATAATAATAATTCTTTTGATAAATCCTTTTGGAATTAGCCAATAAACTTTTAAATCGATAGTAGGATGTGAAAAAAAGTAAATTACAGGGCAGATGATATCTGCAATCGTTATTGAAAAAAATAAAAGATTTTTCGAAGTAGCTAGCCCACAAGTACTTGCAATACATGTGTTTTACATCTATTCTATACATGTCTTGTACTAGTAATTAATTAGGACTTCCACAATCTCTTGCACATGTATCAATTTATTTGGAATATCTTCTTTCAATATTTATTTATTTTCCCATGTTGCTCTACCTATCTTATTTTTCTTTTGGCATTGTCAACATCTGAAATCATCATCTCTCTCACAAGTTTAGGTCAAACTACGTGGAAGGTCATTGCAGTGCGAAGCTTGTGGAGATGATGCAGTACTGACAAGGCAGACATTTTCGGAGTTTGATTATGAAAAGTTTACTCAAACTCCATTATCCACGGTGCATTTCATTTTCACAACTTCTCAATTGTATTTAAAACTGTATGCAAATGAGGACGTAGCTTAGAACTCATCATCCCGTAACTCATGATGGTTTCAGGTTCCATTGAAGTTGAACTTTCTTTCAGCAGATGATCGAATTAGCACCAAAGAGTACAATGAGAAAGTGAGGAAAGGAGACGCACATATATTAGTGGATGTTCGACCAAGTCATCACTATAAGATTGTTTCACTTCCCAACTCTATGAACATACCTCTATCGACGTTGGAAGGTAGATTGCCTGAAATATCTGCTGCCTTGGAAAAAGAGGTAAATAAAGAGAATGGTTCAAATACTTCTCTGTTTGTAATATGCAGAAGAGGCAATGATTCACAAGTTGCTGTTGAATTGCTTCACAAATTGGGTTTTACTTCAGCAAAGGATATAATAGGGGGCTTAGAGTCATGGACTCACAACGTGGATCCAAAGTTCCCTACCTACTAACTATATACCTATAAAA</genome_strand>
        <mrna_strand>CCAGGTGTTATTGGATGTCTTCAAGCCTTAGAGGCCATAAAGGTTGCTAGCTTGGTTGGAGAACCACTCTCCGGAAGAATGCTTCTTTTGGATGCGCTGTCAGGCCGGTTCCGTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAACTACGTGGAAGGTCATTGCAGTGCGAAGCTTGTGGAGATGATGCAGTACTGACAAGGCAGACATTTTCGGAGTTTGATTATGAAAAGTTTACTCAAACTCCATTATCCACG...................................................................................................GTTCCATTGAAGTTGAACTTTCTTTCAGCAGATGATCGAATTAGCACCAAAGAGTACAATGAGAAAGTGAGGAAAGGAGACGCACATATATTAGTGGATGTTCGACCAAGTCATCACTATAAGATTGTTTCACTTCCCAACTCTATGAACATACCTCTATCGACGTTGGAAGGTAGATTGCCTGAAATATCTGCTGCCTTGGAAAAAGAGGTAAATAAAGAGAATGGTTCAAATACTTCTCTGTTTGTAATATGCAGAAGAGGCAATGATTCACAAGTTGCTGTTGAATTGCTTCACAAATTGGGTTTTACTTCAGCAAAGGATATAATANGGGGCTTAGAGTCATGGACTCACAACGTGGATCCAAAGTTCCCTACCTACTAACTATATACCTATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370889" ref_strand="+" ref_description="SGN-E370889 [TUS-27-B15]">
      <seq>ggaaagtcaaaagtagagtcagctgctgctacttgtcgctcgatcaactcttccactcagattgtggagcacagagaagccttccgcacgtccaatgctttggaaattgtgagcaaatatgatgtggtagtagatgcaacagacaatgctccaagccgctacatgatcaatgattgctgtgttgtgcttgggaagcctcttgtatctggagctgctctaggactagaagggcagctgacggtttacaattacaatggaggtccatgctatcgatgcctatttccaactcctccacccacaaatgcttgtcagagatgtgctgatagtggtgtacttggagttgttccaggtgttattggatgtcttcaagccttagaggccataaaggttgctagcttggttggagaaccactctccggaagaatgcttcttttggatgcgctgtcaggccggttccgtaatgtcaaactacgtggaaggtcattgcagtgcgaagcttgtggagatgatgcagtactgacaaggcagacattttcggagtttgattatgaaaagtttactcaaactccattatccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="60460" stop="57751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60160" g_stop="60120" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60119" i_stop="60042" i_length="78">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60041" g_stop="59967" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="116" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59966" i_stop="59819" i_length="148">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59818" g_stop="59740" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="195" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59739" i_stop="59391" i_length="349">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59390" g_stop="59352" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="234" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59351" i_stop="59245" i_length="107">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59244" g_stop="59136" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="343" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59135" i_stop="58788" i_length="348">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.714" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58787" g_stop="58669" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="462" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58668" i_stop="58167" i_length="502">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58166" g_stop="58051" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="578" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E370889" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60160" e_stop="60120"/>
          <exon e_start="60041" e_stop="59967"/>
          <exon e_start="59818" e_stop="59740"/>
          <exon e_start="59390" e_stop="59352"/>
          <exon e_start="59244" e_stop="59136"/>
          <exon e_start="58787" e_stop="58669"/>
          <exon e_start="58166" e_stop="58051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGTCAAAAGTAGAGTCAGCTGCTGCTACTTGTCGCTCGTAAGTCGCAGATAGAGTAATGTTGTTTTGCATTGAACCTGCATTTAATGTTCTAATTTATTTGTTTGTTCGTTTTAGGATCAACTCTTCCACTCAGATTGTGGAGCACAGAGAAGCCTTCCGCACGTCCAATGCTTTGGAAATTGTGAGCAAGTATGGTTTAGTAACACCTATTTATATATGGCTGCATGATATATTTCCTATATGCATCTCTTTTGATGTTTTTTTGTTGGTTCAGTTTCCTCTTTTGCTTCCGTAGAGCGGTGATTTTGACATTTCTTTGCTTAATGATCTCTCTCAGATATGATGTGGTAGTAGATGCAACAGACAATGCTCCAAGCCGCTACATGATCAATGATTGCTGTGTTGTGCTTGGGAAGGTTAGCTGTTTCTTGTGATGTTATCTTTTTATACAAATTCTGCTGGTACTGTGATATTTACTGAAAGCTGGATACGGAAATGCTATAGACTATACAATTGCCTTCTTATGCAATAATATTTCCTTCGATCTTTCGTGCTTAAGCTTACAGGAGGGTTTTTCATATAGCTATTACCTCACTTTTAAGTTGCCATGCTAATGTTCTGGTATGATGTTTGTAACTGTGGTAGGGAATATTTTTGCCTGTACATACCGACAGTGATCTCATGGTGCTAGTATGAAATTGATTTATGAGTTTCGTTTTTGGATGTTGATCCATTTTCTGATAACTGGCTTACTCGTATTAACAGCCTCTTGTATCTGGAGCTGCTCTAGGACTAGAAGGGCAGGTACCATTCCTGACACATTCATCATTCATCATTCCTGGAGCTTTTGTGTGTCCCTAAAACTTCAAATTTATTGGTAACTAACTCTGTACTCTGAATGATTTGTATAGCTGACGGTTTACAATTACAATGGAGGTCCATGCTATCGATGCCTATTTCCAACTCCTCCACCCACAAATGCTTGTCAGAGATGTGCTGATAGTGGTGTACTTGGAGTTGGTACGTTGTTCTTTTCTCAAAATAACCATCTAATCTACTGTCCTTTTTCAACAAGTGTCTGGATTCCTTAGATTATCTCATATTTTATCTCTTATGTGAAATTTCCTTAGTTTTCCGAAACAAAGTTCTCACTATGGTTTGTGTATTTGTTCAGTCTACTTATCTTGTTTATAACAATGGTAGAGCTAGGAGAGGAAAGAATTGATGCCATGTCAAACCTGGAATTTTTGGGAAATGCAACTGTTTTCTGTGTATTATTTGTAGGGTTCAATTGTGAAACATATGGTGTTGTCAGCGTGATATTACATTAGATCCGTCTCTCAGTTTTAATTTTTCCATTCACTTCAGTTCCAGGTGTTATTGGATGTCTTCAAGCCTTAGAGGCCATAAAGGTTGCTAGCTTGGTTGGAGAACCACTCTCCGGAAGAATGCTTCTTTTGGATGCGCTGTCAGGCCGGTTCCGTAATGTGTGTTTGATATTCTAATTTCTCATACTTGCTGTCACTTTGTTCTTTATTCTTTCTGAGCAGAGGATATGTTGCAGTCTTTTTTTGCATTCTGAAATAAGCAGTGAGCAAAAAATGAAATTAGGTAAAACTAAGGCGAGGTATAATAATAATTCTTTTGATAAATCCTTTTGGAATTAGCCAATAAACTTTTAAATCGATAGTAGGATGTGAAAAAAAGTAAATTACAGGGCAGATGATATCTGCAATCGTTATTGAAAAAAATAAAAGATTTTTCGAAGTAGCTAGCCCACAAGTACTTGCAATACATGTGTTTTACATCTATTCTATACATGTCTTGTACTAGTAATTAATTAGGACTTCCACAATCTCTTGCACATGTATCAATTTATTTGGAATATCTTCTTTCAATATTTATTTATTTTCCCATGTTGCTCTACCTATCTTATTTTTCTTTTGGCATTGTCAACATCTGAAATCATCATCTCTCTCACAAGTTTAGGTCAAACTACGTGGAAGGTCATTGCAGTGCGAAGCTTGTGGAGATGATGCAGTACTGACAAGGCAGACATTTTCGGAGTTTGATTATGAAAAGTTTACTCAAACTCCATTATCCAC</genome_strand>
        <mrna_strand>GGAAAGTCAAAAGTAGAGTCAGCTGCTGCTACTTGTCGCTC..............................................................................GATCAACTCTTCCACTCAGATTGTGGAGCACAGAGAAGCCTTCCGCACGTCCAATGCTTTGGAAATTGTGAGCAA....................................................................................................................................................ATATGATGTGGTAGTAGATGCAACAGACAATGCTCCAAGCCGCTACATGATCAATGATTGCTGTGTTGTGCTTGGGAAG.............................................................................................................................................................................................................................................................................................................................................................CCTCTTGTATCTGGAGCTGCTCTAGGACTAGAAGGGCAG...........................................................................................................CTGACGGTTTACAATTACAATGGAGGTCCATGCTATCGATGCCTATTTCCAACTCCTCCACCCACAAATGCTTGTCAGAGATGTGCTGATAGTGGTGTACTTGGAGTTG............................................................................................................................................................................................................................................................................................................................................................TTCCAGGTGTTATTGGATGTCTTCAAGCCTTAGAGGCCATAAAGGTTGCTAGCTTGGTTGGAGAACCACTCTCCGGAAGAATGCTTCTTTTGGATGCGCTGTCAGGCCGGTTCCGTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAACTACGTGGAAGGTCATTGCAGTGCGAAGCTTGTGGAGATGATGCAGTACTGACAAGGCAGACATTTTCGGAGTTTGATTATGAAAAGTTTACTCAAACTCCATTATCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342744" ref_strand="+" ref_description="SGN-E342744 [cTOF-7-O13]">
      <seq>tcttccactcagattgtggagcacagagaagccttccgcacgtccaatgctttggaaattgtgagcaaatatgatgtggtagtagatgcaacagacaatgctccaagccgctacatgatcaatgattgctgtgttgtgcttgggaagcctcttgtatctggagctgctctaggactagaagggcagctgacggtttacaattacaatggaggtccatgctatcgatgcctatttccaactcctccacccacaaatgcttgtcagagatgtgctgatagtggtgtacttggagttgttccaggtgttattggatgtcttcaagccttagaggccataaaggttgctagcttggttggagaaccactctccggaagaatgcttcttttggatgcgctgtcaggccggttccgtaatgtcaaactacgtggaaggtcattgcagtgcgaagcttgtggagatgatgcagtactgacaaggcagacattttcggagtttgattatgaaaagtttactcaaactccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="60334" stop="57758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60034" g_stop="59967" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59966" i_stop="59819" i_length="148">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59818" g_stop="59740" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="147" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59739" i_stop="59391" i_length="349">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59390" g_stop="59352" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="186" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59351" i_stop="59245" i_length="107">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59244" g_stop="59136" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="295" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59135" i_stop="58788" i_length="348">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.714" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58787" g_stop="58669" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="414" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58668" i_stop="58167" i_length="502">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58166" g_stop="58058" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="523" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E342744" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60034" e_stop="59967"/>
          <exon e_start="59818" e_stop="59740"/>
          <exon e_start="59390" e_stop="59352"/>
          <exon e_start="59244" e_stop="59136"/>
          <exon e_start="58787" e_stop="58669"/>
          <exon e_start="58166" e_stop="58058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCACTCAGATTGTGGAGCACAGAGAAGCCTTCCGCACGTCCAATGCTTTGGAAATTGTGAGCAAGTATGGTTTAGTAACACCTATTTATATATGGCTGCATGATATATTTCCTATATGCATCTCTTTTGATGTTTTTTTGTTGGTTCAGTTTCCTCTTTTGCTTCCGTAGAGCGGTGATTTTGACATTTCTTTGCTTAATGATCTCTCTCAGATATGATGTGGTAGTAGATGCAACAGACAATGCTCCAAGCCGCTACATGATCAATGATTGCTGTGTTGTGCTTGGGAAGGTTAGCTGTTTCTTGTGATGTTATCTTTTTATACAAATTCTGCTGGTACTGTGATATTTACTGAAAGCTGGATACGGAAATGCTATAGACTATACAATTGCCTTCTTATGCAATAATATTTCCTTCGATCTTTCGTGCTTAAGCTTACAGGAGGGTTTTTCATATAGCTATTACCTCACTTTTAAGTTGCCATGCTAATGTTCTGGTATGATGTTTGTAACTGTGGTAGGGAATATTTTTGCCTGTACATACCGACAGTGATCTCATGGTGCTAGTATGAAATTGATTTATGAGTTTCGTTTTTGGATGTTGATCCATTTTCTGATAACTGGCTTACTCGTATTAACAGCCTCTTGTATCTGGAGCTGCTCTAGGACTAGAAGGGCAGGTACCATTCCTGACACATTCATCATTCATCATTCCTGGAGCTTTTGTGTGTCCCTAAAACTTCAAATTTATTGGTAACTAACTCTGTACTCTGAATGATTTGTATAGCTGACGGTTTACAATTACAATGGAGGTCCATGCTATCGATGCCTATTTCCAACTCCTCCACCCACAAATGCTTGTCAGAGATGTGCTGATAGTGGTGTACTTGGAGTTGGTACGTTGTTCTTTTCTCAAAATAACCATCTAATCTACTGTCCTTTTTCAACAAGTGTCTGGATTCCTTAGATTATCTCATATTTTATCTCTTATGTGAAATTTCCTTAGTTTTCCGAAACAAAGTTCTCACTATGGTTTGTGTATTTGTTCAGTCTACTTATCTTGTTTATAACAATGGTAGAGCTAGGAGAGGAAAGAATTGATGCCATGTCAAACCTGGAATTTTTGGGAAATGCAACTGTTTTCTGTGTATTATTTGTAGGGTTCAATTGTGAAACATATGGTGTTGTCAGCGTGATATTACATTAGATCCGTCTCTCAGTTTTAATTTTTCCATTCACTTCAGTTCCAGGTGTTATTGGATGTCTTCAAGCCTTAGAGGCCATAAAGGTTGCTAGCTTGGTTGGAGAACCACTCTCCGGAAGAATGCTTCTTTTGGATGCGCTGTCAGGCCGGTTCCGTAATGTGTGTTTGATATTCTAATTTCTCATACTTGCTGTCACTTTGTTCTTTATTCTTTCTGAGCAGAGGATATGTTGCAGTCTTTTTTTGCATTCTGAAATAAGCAGTGAGCAAAAAATGAAATTAGGTAAAACTAAGGCGAGGTATAATAATAATTCTTTTGATAAATCCTTTTGGAATTAGCCAATAAACTTTTAAATCGATAGTAGGATGTGAAAAAAAGTAAATTACAGGGCAGATGATATCTGCAATCGTTATTGAAAAAAATAAAAGATTTTTCGAAGTAGCTAGCCCACAAGTACTTGCAATACATGTGTTTTACATCTATTCTATACATGTCTTGTACTAGTAATTAATTAGGACTTCCACAATCTCTTGCACATGTATCAATTTATTTGGAATATCTTCTTTCAATATTTATTTATTTTCCCATGTTGCTCTACCTATCTTATTTTTCTTTTGGCATTGTCAACATCTGAAATCATCATCTCTCTCACAAGTTTAGGTCAAACTACGTGGAAGGTCATTGCAGTGCGAAGCTTGTGGAGATGATGCAGTACTGACAAGGCAGACATTTTCGGAGTTTGATTATGAAAAGTTTACTCAAACTCCAT</genome_strand>
        <mrna_strand>TCTTCCACTCAGATTGTGGAGCACAGAGAAGCCTTCCGCACGTCCAATGCTTTGGAAATTGTGAGCAA....................................................................................................................................................ATATGATGTGGTAGTAGATGCAACAGACAATGCTCCAAGCCGCTACATGATCAATGATTGCTGTGTTGTGCTTGGGAAG.............................................................................................................................................................................................................................................................................................................................................................CCTCTTGTATCTGGAGCTGCTCTAGGACTAGAAGGGCAG...........................................................................................................CTGACGGTTTACAATTACAATGGAGGTCCATGCTATCGATGCCTATTTCCAACTCCTCCACCCACAAATGCTTGTCAGAGATGTGCTGATAGTGGTGTACTTGGAGTTG............................................................................................................................................................................................................................................................................................................................................................TTCCAGGTGTTATTGGATGTCTTCAAGCCTTAGAGGCCATAAAGGTTGCTAGCTTGGTTGGAGAACCACTCTCCGGAAGAATGCTTCTTTTGGATGCGCTGTCAGGCCGGTTCCGTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAACTACGTGGAAGGTCATTGCAGTGCGAAGCTTGTGGAGATGATGCAGTACTGACAAGGCAGACATTTTCGGAGTTTGATTATGAAAAGTTTACTCAAACTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268595" ref_strand="+" ref_description="SGN-E268595 [cLEI-13-N3]">
      <seq>ggaaagtcaaaagtagagtcagctgctgctacttgtcgctcgatcaactcttccactcagattgtggagcacagagaagccttccgcacgtccaatgctttggaaattgtgagcaaatatgatgtggtagtagatgcaacagacaatgctccaagccgctacatgatcaatgattgctgtgttgtgcttgggaagcctcttgtatctggagctgctctaggactagaagggcagctgacggtttacaattacaatggaggtccatgctatcgatgcctatttccaactcctccacccacaaatgcttgtcagagatgtgctgatagtggtgtacttggagttgttccaggtgttattggatgtcttcaagccttagaggccataaaggttgctagcttggttggagaaccactctccggaagaatgcttcttttggatgcgctgtcaggccggttccgtaatgtcaaactacgtggaaggtcattgcagtgcgaagcttgtggagatgatgcagtactgacaaggcagacattttcggagtttgattatgaaaagtttactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="60460" stop="57767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60160" g_stop="60120" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60119" i_stop="60042" i_length="78">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60041" g_stop="59967" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="116" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59966" i_stop="59819" i_length="148">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59818" g_stop="59740" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="195" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59739" i_stop="59391" i_length="349">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59390" g_stop="59352" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="234" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59351" i_stop="59245" i_length="107">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59244" g_stop="59136" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="343" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59135" i_stop="58788" i_length="348">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.714" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58787" g_stop="58669" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="462" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58668" i_stop="58167" i_length="502">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58166" g_stop="58067" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="562" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E268595" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60160" e_stop="60120"/>
          <exon e_start="60041" e_stop="59967"/>
          <exon e_start="59818" e_stop="59740"/>
          <exon e_start="59390" e_stop="59352"/>
          <exon e_start="59244" e_stop="59136"/>
          <exon e_start="58787" e_stop="58669"/>
          <exon e_start="58166" e_stop="58067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGTCAAAAGTAGAGTCAGCTGCTGCTACTTGTCGCTCGTAAGTCGCAGATAGAGTAATGTTGTTTTGCATTGAACCTGCATTTAATGTTCTAATTTATTTGTTTGTTCGTTTTAGGATCAACTCTTCCACTCAGATTGTGGAGCACAGAGAAGCCTTCCGCACGTCCAATGCTTTGGAAATTGTGAGCAAGTATGGTTTAGTAACACCTATTTATATATGGCTGCATGATATATTTCCTATATGCATCTCTTTTGATGTTTTTTTGTTGGTTCAGTTTCCTCTTTTGCTTCCGTAGAGCGGTGATTTTGACATTTCTTTGCTTAATGATCTCTCTCAGATATGATGTGGTAGTAGATGCAACAGACAATGCTCCAAGCCGCTACATGATCAATGATTGCTGTGTTGTGCTTGGGAAGGTTAGCTGTTTCTTGTGATGTTATCTTTTTATACAAATTCTGCTGGTACTGTGATATTTACTGAAAGCTGGATACGGAAATGCTATAGACTATACAATTGCCTTCTTATGCAATAATATTTCCTTCGATCTTTCGTGCTTAAGCTTACAGGAGGGTTTTTCATATAGCTATTACCTCACTTTTAAGTTGCCATGCTAATGTTCTGGTATGATGTTTGTAACTGTGGTAGGGAATATTTTTGCCTGTACATACCGACAGTGATCTCATGGTGCTAGTATGAAATTGATTTATGAGTTTCGTTTTTGGATGTTGATCCATTTTCTGATAACTGGCTTACTCGTATTAACAGCCTCTTGTATCTGGAGCTGCTCTAGGACTAGAAGGGCAGGTACCATTCCTGACACATTCATCATTCATCATTCCTGGAGCTTTTGTGTGTCCCTAAAACTTCAAATTTATTGGTAACTAACTCTGTACTCTGAATGATTTGTATAGCTGACGGTTTACAATTACAATGGAGGTCCATGCTATCGATGCCTATTTCCAACTCCTCCACCCACAAATGCTTGTCAGAGATGTGCTGATAGTGGTGTACTTGGAGTTGGTACGTTGTTCTTTTCTCAAAATAACCATCTAATCTACTGTCCTTTTTCAACAAGTGTCTGGATTCCTTAGATTATCTCATATTTTATCTCTTATGTGAAATTTCCTTAGTTTTCCGAAACAAAGTTCTCACTATGGTTTGTGTATTTGTTCAGTCTACTTATCTTGTTTATAACAATGGTAGAGCTAGGAGAGGAAAGAATTGATGCCATGTCAAACCTGGAATTTTTGGGAAATGCAACTGTTTTCTGTGTATTATTTGTAGGGTTCAATTGTGAAACATATGGTGTTGTCAGCGTGATATTACATTAGATCCGTCTCTCAGTTTTAATTTTTCCATTCACTTCAGTTCCAGGTGTTATTGGATGTCTTCAAGCCTTAGAGGCCATAAAGGTTGCTAGCTTGGTTGGAGAACCACTCTCCGGAAGAATGCTTCTTTTGGATGCGCTGTCAGGCCGGTTCCGTAATGTGTGTTTGATATTCTAATTTCTCATACTTGCTGTCACTTTGTTCTTTATTCTTTCTGAGCAGAGGATATGTTGCAGTCTTTTTTTGCATTCTGAAATAAGCAGTGAGCAAAAAATGAAATTAGGTAAAACTAAGGCGAGGTATAATAATAATTCTTTTGATAAATCCTTTTGGAATTAGCCAATAAACTTTTAAATCGATAGTAGGATGTGAAAAAAAGTAAATTACAGGGCAGATGATATCTGCAATCGTTATTGAAAAAAATAAAAGATTTTTCGAAGTAGCTAGCCCACAAGTACTTGCAATACATGTGTTTTACATCTATTCTATACATGTCTTGTACTAGTAATTAATTAGGACTTCCACAATCTCTTGCACATGTATCAATTTATTTGGAATATCTTCTTTCAATATTTATTTATTTTCCCATGTTGCTCTACCTATCTTATTTTTCTTTTGGCATTGTCAACATCTGAAATCATCATCTCTCTCACAAGTTTAGGTCAAACTACGTGGAAGGTCATTGCAGTGCGAAGCTTGTGGAGATGATGCAGTACTGACAAGGCAGACATTTTCGGAGTTTGATTATGAAAAGTTTACTC</genome_strand>
        <mrna_strand>GGAAAGTCAAAAGTAGAGTCAGCTGCTGCTACTTGTCGCTC..............................................................................GATCAACTCTTCCACTCAGATTGTGGAGCACAGAGAAGCCTTCCGCACGTCCAATGCTTTGGAAATTGTGAGCAA....................................................................................................................................................ATATGATGTGGTAGTAGATGCAACAGACAATGCTCCAAGCCGCTACATGATCAATGATTGCTGTGTTGTGCTTGGGAAG.............................................................................................................................................................................................................................................................................................................................................................CCTCTTGTATCTGGAGCTGCTCTAGGACTAGAAGGGCAG...........................................................................................................CTGACGGTTTACAATTACAATGGAGGTCCATGCTATCGATGCCTATTTCCAACTCCTCCACCCACAAATGCTTGTCAGAGATGTGCTGATAGTGGTGTACTTGGAGTTG............................................................................................................................................................................................................................................................................................................................................................TTCCAGGTGTTATTGGATGTCTTCAAGCCTTAGAGGCCATAAAGGTTGCTAGCTTGGTTGGAGAACCACTCTCCGGAAGAATGCTTCTTTTGGATGCGCTGTCAGGCCGGTTCCGTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAACTACGTGGAAGGTCATTGCAGTGCGAAGCTTGTGGAGATGATGCAGTACTGACAAGGCAGACATTTTCGGAGTTTGATTATGAAAAGTTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368067" ref_strand="+" ref_description="SGN-E368067 [TUS-22-C12]">
      <seq>agaaccactctccggaagaatgcttcttttggatgcgctgtcaggccggttccgtaatgtgtgtttgatattctaatttctcatacttgctgtcactttgttctttattctttctgagcagaggatatgttgcagtctttttttgcattctgaaataagcagtgagcaaaaaatgaaattaggtaaaactaaggcgaggtataataataattcttttgataaatccttttggaattagccaataaacttttaaatcgatagtaggatgtgaaaaaaagtaaattacagggcagatgatatctgcaatcgttattgaaaaaaataaaagatttttcgaagtagctagcccacaagtacttgcaatacatgtgttttacatctattctatacatgtcttgtactagtaattaattaggacttccacaatctcttgcacatgtattaatttatttggaatatcttcttttaatatttatttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="59026" stop="57945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58726" g_stop="58245" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E368067" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58726" e_stop="58245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACCACTCTCCGGAAGAATGCTTCTTTTGGATGCGCTGTCAGGCCGGTTCCGTAATGTGTGTTTGATATTCTAATTTCTCATACTTGCTGTCACTTTGTTCTTTATTCTTTCTGAGCAGAGGATATGTTGCAGTCTTTTTTTGCATTCTGAAATAAGCAGTGAGCAAAAAATGAAATTAGGTAAAACTAAGGCGAGGTATAATAATAATTCTTTTGATAAATCCTTTTGGAATTAGCCAATAAACTTTTAAATCGATAGTAGGATGTGAAAAAAAGTAAATTACAGGGCAGATGATATCTGCAATCGTTATTGAAAAAAATAAAAGATTTTTCGAAGTAGCTAGCCCACAAGTACTTGCAATACATGTGTTTTACATCTATTCTATACATGTCTTGTACTAGTAATTAATTAGGACTTCCACAATCTCTTGCACATGTATCAATTTATTTGGAATATCTTCTTTCAATATTTATTTATTT</genome_strand>
        <mrna_strand>AGAACCACTCTCCGGAAGAATGCTTCTTTTGGATGCGCTGTCAGGCCGGTTCCGTAATGTGTGTTTGATATTCTAATTTCTCATACTTGCTGTCACTTTGTTCTTTATTCTTTCTGAGCAGAGGATATGTTGCAGTCTTTTTTTGCATTCTGAAATAAGCAGTGAGCAAAAAATGAAATTAGGTAAAACTAAGGCGAGGTATAATAATAATTCTTTTGATAAATCCTTTTGGAATTAGCCAATAAACTTTTAAATCGATAGTAGGATGTGAAAAAAAGTAAATTACAGGGCAGATGATATCTGCAATCGTTATTGAAAAAAATAAAAGATTTTTCGAAGTAGCTAGCCCACAAGTACTTGCAATACATGTGTTTTACATCTATTCTATACATGTCTTGTACTAGTAATTAATTAGGACTTCCACAATCTCTTGCACATGTATTAATTTATTTGGAATATCTTCTTTTAATATTTATTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238432" ref_strand="+" ref_description="SGN-E238432 [cLED-17-F10]">
      <seq>agaaccactctccggaagaatgcttcttttggatgcgctgtcaggccggttccgtaatgtgtgtttgatattctaatttctcatacttgctgtcactttgttctttattctttctgagcagaggatatgttgcagtctttttttgcattctgaaataagcagtgagcaaaaaatgaaattaggtaaaactaaggcgaggtataataataattcttttgataaatccttttggaattagccaataaacttttaaatcgatagtaggatgtgaaaaaaagtaaattacagggcagatgatatctgcaatcgttattgaaaaaaataaaagatttttcgaagtagctagcccacaagtacttgcaatacatgtgttttacatctattctatacatgtcttgtactagtaattaattaggacttccacaatctcttgcacatgtatcaatttatttggaatatcttctttcaatatttatttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="59026" stop="57945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58726" g_stop="58245" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E238432" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58726" e_stop="58245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACCACTCTCCGGAAGAATGCTTCTTTTGGATGCGCTGTCAGGCCGGTTCCGTAATGTGTGTTTGATATTCTAATTTCTCATACTTGCTGTCACTTTGTTCTTTATTCTTTCTGAGCAGAGGATATGTTGCAGTCTTTTTTTGCATTCTGAAATAAGCAGTGAGCAAAAAATGAAATTAGGTAAAACTAAGGCGAGGTATAATAATAATTCTTTTGATAAATCCTTTTGGAATTAGCCAATAAACTTTTAAATCGATAGTAGGATGTGAAAAAAAGTAAATTACAGGGCAGATGATATCTGCAATCGTTATTGAAAAAAATAAAAGATTTTTCGAAGTAGCTAGCCCACAAGTACTTGCAATACATGTGTTTTACATCTATTCTATACATGTCTTGTACTAGTAATTAATTAGGACTTCCACAATCTCTTGCACATGTATCAATTTATTTGGAATATCTTCTTTCAATATTTATTTATTT</genome_strand>
        <mrna_strand>AGAACCACTCTCCGGAAGAATGCTTCTTTTGGATGCGCTGTCAGGCCGGTTCCGTAATGTGTGTTTGATATTCTAATTTCTCATACTTGCTGTCACTTTGTTCTTTATTCTTTCTGAGCAGAGGATATGTTGCAGTCTTTTTTTGCATTCTGAAATAAGCAGTGAGCAAAAAATGAAATTAGGTAAAACTAAGGCGAGGTATAATAATAATTCTTTTGATAAATCCTTTTGGAATTAGCCAATAAACTTTTAAATCGATAGTAGGATGTGAAAAAAAGTAAATTACAGGGCAGATGATATCTGCAATCGTTATTGAAAAAAATAAAAGATTTTTCGAAGTAGCTAGCCCACAAGTACTTGCAATACATGTGTTTTACATCTATTCTATACATGTCTTGTACTAGTAATTAATTAGGACTTCCACAATCTCTTGCACATGTATCAATTTATTTGGAATATCTTCTTTCAATATTTATTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251303" ref_strand="+" ref_description="SGN-E251303 [cLEG-10-H6]">
      <seq>caactcgtattcgccaggaaatcgatcacttgaagtccaaaaagagaaatatagagcaacaaatttctgctctcgaagcgcagcttaatcaacttgaagtcaattcaagtacagtgtgtccacagccgctttcaaatggagatttgagcaattcaaatggtttatctcccgatatgatttacagatacagtcggcacttattgcttccttcatttggcgttcaaggtcaggcgaatctattgaaatcttcagttttggtaattggagctggaggtttaggatcacctgctttgctatatcttgctgcctgtggagttggtcgaatgggtatagttgatcatgatgtagtggaacttaacaatcttcagaggcagataatacacactgaagcatatattggaaagtcaaaagtagagtcagctgctgctacttgtcgctcgatcaactcttccactcagattgtggagcacagagaagccttccgcacgtccaatgctttggaaattgtgagcaaatatgatgtggtagtagatgcaacagacaatgctccaagccgctacatgatcaatgattgctgtgttgtgcttgggaagcctcttgtatctggagctgctctaggactagaagggcagctgacggtttacaattacaatggaggtccatgctatcgatgccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="61252" stop="58900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60952" g_stop="60728" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60727" i_stop="60634" i_length="94">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60633" g_stop="60541" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="318" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60540" i_stop="60380" i_length="161">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60379" g_stop="60324" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="374" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60323" i_stop="60185" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60184" g_stop="60120" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="439" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60119" i_stop="60042" i_length="78">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60041" g_stop="59967" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="514" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59966" i_stop="59819" i_length="148">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59818" g_stop="59740" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="593" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="59739" i_stop="59391" i_length="349">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="59390" g_stop="59352" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="632" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="59351" i_stop="59245" i_length="107">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="59244" g_stop="59200" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="677" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E251303" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60952" e_stop="60728"/>
          <exon e_start="60633" e_stop="60541"/>
          <exon e_start="60379" e_stop="60324"/>
          <exon e_start="60184" e_stop="60120"/>
          <exon e_start="60041" e_stop="59967"/>
          <exon e_start="59818" e_stop="59740"/>
          <exon e_start="59390" e_stop="59352"/>
          <exon e_start="59244" e_stop="59200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCGTATTCGCCAGGAAATCGATCACTTGAAGTCCAAAAAGAGAAATATAGAGCAACAAATTTCTGCTCTCGAAGCGCAGCTTAATCAACTTGAAGTCAATTCAAGTACAGTGTGTCCACAGCCGCTTTCAAATGGAGATTTGAGCAATTCAAATGGTTTATCTCCCGATATGATTTACAGATACAGTCGGCACTTATTGCTTCCTTCATTTGGCGTTCAAGGTTCGGTTCAGTTCAATTTTGCAGTGAGGATAGTTAATTGACTTGAATAATTAACTATTTCTGTTTAATAATTGAGATTTATTGCTTGAAATAGGTCAGGCGAATCTATTGAAATCTTCAGTTTTGGTAATTGGAGCTGGAGGTTTAGGATCACCTGCTTTGCTATATCTTGCTGCCTGTGGAGTTGGTTAGATATGTAACTGAATTCGTATATTTTGCTCTCGAATTCAGAATTTGAAGTTAGTGAATGGAGCCGTACATTGTAGTAACTATTTATTTTTTTTTGAAAAGGAATTTTCGACTATGCAATGCTGTTGAGAATTACGTTTTTCGTATGGTATTTTGCAGGTCGAATGGGTATAGTTGATCATGATGTAGTGGAACTTAACAATCTTCAGAGGCAGGTAATTTTTCGATCAATAGCTATGTGTTGTATGCACGGGCTATTGAATTTGATGCATGCTGTTTTTGTCAAGTGATCTTGAGATTTTTGCTGTTTCTGTTAATAAGTTAATTGGCTATGGTGTTGACATTGTGCTCCAGATAATACACACTGAAGCATATATTGGAAAGTCAAAAGTAGAGTCAGCTGCTGCTACTTGTCGCTCGTAAGTCGCAGATAGAGTAATGTTGTTTTGCATTGAACCTGCATTTAATGTTCTAATTTATTTGTTTGTTCGTTTTAGGATCAACTCTTCCACTCAGATTGTGGAGCACAGAGAAGCCTTCCGCACGTCCAATGCTTTGGAAATTGTGAGCAAGTATGGTTTAGTAACACCTATTTATATATGGCTGCATGATATATTTCCTATATGCATCTCTTTTGATGTTTTTTTGTTGGTTCAGTTTCCTCTTTTGCTTCCGTAGAGCGGTGATTTTGACATTTCTTTGCTTAATGATCTCTCTCAGATATGATGTGGTAGTAGATGCAACAGACAATGCTCCAAGCCGCTACATGATCAATGATTGCTGTGTTGTGCTTGGGAAGGTTAGCTGTTTCTTGTGATGTTATCTTTTTATACAAATTCTGCTGGTACTGTGATATTTACTGAAAGCTGGATACGGAAATGCTATAGACTATACAATTGCCTTCTTATGCAATAATATTTCCTTCGATCTTTCGTGCTTAAGCTTACAGGAGGGTTTTTCATATAGCTATTACCTCACTTTTAAGTTGCCATGCTAATGTTCTGGTATGATGTTTGTAACTGTGGTAGGGAATATTTTTGCCTGTACATACCGACAGTGATCTCATGGTGCTAGTATGAAATTGATTTATGAGTTTCGTTTTTGGATGTTGATCCATTTTCTGATAACTGGCTTACTCGTATTAACAGCCTCTTGTATCTGGAGCTGCTCTAGGACTAGAAGGGCAGGTACCATTCCTGACACATTCATCATTCATCATTCCTGGAGCTTTTGTGTGTCCCTAAAACTTCAAATTTATTGGTAACTAACTCTGTACTCTGAATGATTTGTATAGCTGACGGTTTACAATTACAATGGAGGTCCATGCTATCGATGCCTA</genome_strand>
        <mrna_strand>CAACTCGTATTCGCCAGGAAATCGATCACTTGAAGTCCAAAAAGAGAAATATAGAGCAACAAATTTCTGCTCTCGAAGCGCAGCTTAATCAACTTGAAGTCAATTCAAGTACAGTGTGTCCACAGCCGCTTTCAAATGGAGATTTGAGCAATTCAAATGGTTTATCTCCCGATATGATTTACAGATACAGTCGGCACTTATTGCTTCCTTCATTTGGCGTTCAAG..............................................................................................GTCAGGCGAATCTATTGAAATCTTCAGTTTTGGTAATTGGAGCTGGAGGTTTAGGATCACCTGCTTTGCTATATCTTGCTGCCTGTGGAGTTG.................................................................................................................................................................GTCGAATGGGTATAGTTGATCATGATGTAGTGGAACTTAACAATCTTCAGAGGCAG...........................................................................................................................................ATAATACACACTGAAGCATATATTGGAAAGTCAAAAGTAGAGTCAGCTGCTGCTACTTGTCGCTC..............................................................................GATCAACTCTTCCACTCAGATTGTGGAGCACAGAGAAGCCTTCCGCACGTCCAATGCTTTGGAAATTGTGAGCAA....................................................................................................................................................ATATGATGTGGTAGTAGATGCAACAGACAATGCTCCAAGCCGCTACATGATCAATGATTGCTGTGTTGTGCTTGGGAAG.............................................................................................................................................................................................................................................................................................................................................................CCTCTTGTATCTGGAGCTGCTCTAGGACTAGAAGGGCAG...........................................................................................................CTGACGGTTTACAATTACAATGGAGGTCCATGCTATCGATGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337350" ref_strand="+" ref_description="SGN-E337350 [cTOE-18-I14]">
      <seq>aacaatattcatattcttccttagcttctattaatggatttcaatggcgtggaagcaactcgtattcgccaggaaatcgatcacttgaagtccaaaaagagaaatatagagcaacaaatttctgctctcgaagcgcagcttaatcaacttgaagtcaattcaagtacagtgtgtccacagccgctttcaaatggagatttgagcaattcaaatggtttatctcccgatatgatttacagatacagtcggcacttattgcttccttcatttggcgttcaaggtcaggcgaatctattgaaatcttcagttttggtaattggagctggaggtttaggatcacctgctttgctatatcttgctgcctgtggagttggtcgaatgggtatagttgatcatgatgtagtggaacttaacaatcttcagaggcagataatacacactgaagcatatattggaaagtcaaaagtagagtcagctgctgctacttgtcgctcgatcaactcttccactcagattgtggagcacagagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="61307" stop="59704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61007" g_stop="60728" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60727" i_stop="60634" i_length="94">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60633" g_stop="60541" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="373" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60540" i_stop="60380" i_length="161">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60379" g_stop="60324" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="429" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60323" i_stop="60185" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60184" g_stop="60120" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="494" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60119" i_stop="60042" i_length="78">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60041" g_stop="60004" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="532" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E337350" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61007" e_stop="60728"/>
          <exon e_start="60633" e_stop="60541"/>
          <exon e_start="60379" e_stop="60324"/>
          <exon e_start="60184" e_stop="60120"/>
          <exon e_start="60041" e_stop="60004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATATTCATATTCTTCCTTAGCTTCTATTAATGGATTTCAATGGCGTGGAAGCAACTCGTATTCGCCAGGAAATCGATCACTTGAAGTCCAAAAAGAGAAATATAGAGCAACAAATTTCTGCTCTCGAAGCGCAGCTTAATCAACTTGAAGTCAATTCAAGTACAGTGTGTCCACAGCCGCTTTCAAATGGAGATTTGAGCAATTCAAATGGTTTATCTCCCGATATGATTTACAGATACAGTCGGCACTTATTGCTTCCTTCATTTGGCGTTCAAGGTTCGGTTCAGTTCAATTTTGCAGTGAGGATAGTTAATTGACTTGAATAATTAACTATTTCTGTTTAATAATTGAGATTTATTGCTTGAAATAGGTCAGGCGAATCTATTGAAATCTTCAGTTTTGGTAATTGGAGCTGGAGGTTTAGGATCACCTGCTTTGCTATATCTTGCTGCCTGTGGAGTTGGTTAGATATGTAACTGAATTCGTATATTTTGCTCTCGAATTCAGAATTTGAAGTTAGTGAATGGAGCCGTACATTGTAGTAACTATTTATTTTTTTTTGAAAAGGAATTTTCGACTATGCAATGCTGTTGAGAATTACGTTTTTCGTATGGTATTTTGCAGGTCGAATGGGTATAGTTGATCATGATGTAGTGGAACTTAACAATCTTCAGAGGCAGGTAATTTTTCGATCAATAGCTATGTGTTGTATGCACGGGCTATTGAATTTGATGCATGCTGTTTTTGTCAAGTGATCTTGAGATTTTTGCTGTTTCTGTTAATAAGTTAATTGGCTATGGTGTTGACATTGTGCTCCAGATAATACACACTGAAGCATATATTGGAAAGTCAAAAGTAGAGTCAGCTGCTGCTACTTGTCGCTCGTAAGTCGCAGATAGAGTAATGTTGTTTTGCATTGAACCTGCATTTAATGTTCTAATTTATTTGTTTGTTCGTTTTAGGATCAACTCTTCCACTCAGATTGTGGAGCACAGAGAAG</genome_strand>
        <mrna_strand>AACAATATTCATATTCTTCCTTAGCTTCTATTAATGGATTTCAATGGCGTGGAAGCAACTCGTATTCGCCAGGAAATCGATCACTTGAAGTCCAAAAAGAGAAATATAGAGCAACAAATTTCTGCTCTCGAAGCGCAGCTTAATCAACTTGAAGTCAATTCAAGTACAGTGTGTCCACAGCCGCTTTCAAATGGAGATTTGAGCAATTCAAATGGTTTATCTCCCGATATGATTTACAGATACAGTCGGCACTTATTGCTTCCTTCATTTGGCGTTCAAG..............................................................................................GTCAGGCGAATCTATTGAAATCTTCAGTTTTGGTAATTGGAGCTGGAGGTTTAGGATCACCTGCTTTGCTATATCTTGCTGCCTGTGGAGTTG.................................................................................................................................................................GTCGAATGGGTATAGTTGATCATGATGTAGTGGAACTTAACAATCTTCAGAGGCAG...........................................................................................................................................ATAATACACACTGAAGCATATATTGGAAAGTCAAAAGTAGAGTCAGCTGCTGCTACTTGTCGCTC..............................................................................GATCAACTCTTCCACTCAGATTGTGGAGCACAGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249625" ref_strand="+" ref_description="SGN-E249625 [cLEF-56-K22]">
      <seq>attcatattcttccttagcttctattaatggatttcaatggcgtggaagcaactcgtattcgccaggaaatcgatcacttgaagtccaaaaagagaaatatagagcaacaaatttctgctctcgaagcgcagcttaatcaacttgaagtcaattcaagtacagtgtgtccacagccgctttcaaatggagatttgagcaattcaaatggtttatctcccgatatgatttacagatacagtcggcacttattgcttccttcatttggcgttcaaggtcaggcgaatctattgaaatcttcagttttggtaattggagctggaggtttaggatcacctgctttgctatatcttgctgcctgtggagttggtcgaatgggtatagttgatcatgatgtagtggaacttaacaatcttcagaggcagataatacacactgaagcatatattggaaagtcaaaagtagagtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="61301" stop="59839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61001" g_stop="60728" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60727" i_stop="60634" i_length="94">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60633" g_stop="60541" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="367" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60540" i_stop="60380" i_length="161">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60379" g_stop="60324" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="423" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60323" i_stop="60185" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60184" g_stop="60139" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="469" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E249625" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61001" e_stop="60728"/>
          <exon e_start="60633" e_stop="60541"/>
          <exon e_start="60379" e_stop="60324"/>
          <exon e_start="60184" e_stop="60139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATATTCTTCCTTAGCTTCTATTAATGGATTTCAATGGCGTGGAAGCAACTCGTATTCGCCAGGAAATCGATCACTTGAAGTCCAAAAAGAGAAATATAGAGCAACAAATTTCTGCTCTCGAAGCGCAGCTTAATCAACTTGAAGTCAATTCAAGTACAGTGTGTCCACAGCCGCTTTCAAATGGAGATTTGAGCAATTCAAATGGTTTATCTCCCGATATGATTTACAGATACAGTCGGCACTTATTGCTTCCTTCATTTGGCGTTCAAGGTTCGGTTCAGTTCAATTTTGCAGTGAGGATAGTTAATTGACTTGAATAATTAACTATTTCTGTTTAATAATTGAGATTTATTGCTTGAAATAGGTCAGGCGAATCTATTGAAATCTTCAGTTTTGGTAATTGGAGCTGGAGGTTTAGGATCACCTGCTTTGCTATATCTTGCTGCCTGTGGAGTTGGTTAGATATGTAACTGAATTCGTATATTTTGCTCTCGAATTCAGAATTTGAAGTTAGTGAATGGAGCCGTACATTGTAGTAACTATTTATTTTTTTTTGAAAAGGAATTTTCGACTATGCAATGCTGTTGAGAATTACGTTTTTCGTATGGTATTTTGCAGGTCGAATGGGTATAGTTGATCATGATGTAGTGGAACTTAACAATCTTCAGAGGCAGGTAATTTTTCGATCAATAGCTATGTGTTGTATGCACGGGCTATTGAATTTGATGCATGCTGTTTTTGTCAAGTGATCTTGAGATTTTTGCTGTTTCTGTTAATAAGTTAATTGGCTATGGTGTTGACATTGTGCTCCAGATAATACACACTGAAGCATATATTGGAAAGTCAAAAGTAGAGTCAG</genome_strand>
        <mrna_strand>ATTCATATTCTTCCTTAGCTTCTATTAATGGATTTCAATGGCGTGGAAGCAACTCGTATTCGCCAGGAAATCGATCACTTGAAGTCCAAAAAGAGAAATATAGAGCAACAAATTTCTGCTCTCGAAGCGCAGCTTAATCAACTTGAAGTCAATTCAAGTACAGTGTGTCCACAGCCGCTTTCAAATGGAGATTTGAGCAATTCAAATGGTTTATCTCCCGATATGATTTACAGATACAGTCGGCACTTATTGCTTCCTTCATTTGGCGTTCAAG..............................................................................................GTCAGGCGAATCTATTGAAATCTTCAGTTTTGGTAATTGGAGCTGGAGGTTTAGGATCACCTGCTTTGCTATATCTTGCTGCCTGTGGAGTTG.................................................................................................................................................................GTCGAATGGGTATAGTTGATCATGATGTAGTGGAACTTAACAATCTTCAGAGGCAG...........................................................................................................................................ATAATACACACTGAAGCATATATTGGAAAGTCAAAAGTAGAGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283948" ref_strand="+" ref_description="SGN-E283948 [cLER-13-J1]">
      <seq>aaaaaccattttgagaacaaagtgaggtattccataaactatacaagaaaaataatctatgaagaaaaatagagtgtgagcgatattttagtaaggtggaaaccaaaagagtgttgttccttttgagtgtgtattagttactttgagtattgtattcgtgactacacagtttaaaactctttactatattaatatcagttgctcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="62885" stop="62079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62585" g_stop="62379" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E283948" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62585" e_stop="62379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCATTTTGAGAGCAAAGTGAGGTATTCTATAGACTATACAAGAAAAATAGTTTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGG-AATCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACATTGAGTGTTGTATTCGTGACTACACAGTGTAAAATTCCTTACTATAGTAATATCAGTTGCTCCTCT</genome_strand>
        <mrna_strand>AAAAACCATTTTGAGAACAAAGTGAGGTATTCCATAAACTATACAAGAAAAATAATCTATGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGGTGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTATTAGTTACTTTGAGTATTGTATTCGTGACTACACAGTTTAAAACTCTTTACTATATTAATATCAGTTGCTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307120" ref_strand="+" ref_description="SGN-E307120 [cLEY-15-L8]">
      <seq>aaatctcattatttaaaatatgcattacaaaatgctcaatcttttgggggtacgacttgggccatttcagaatttagttgggatgtcaaatacgctggccttcaactactcgccgctacgttaccgaggcaagataagagagagaaagaagacgataaaattatcgaagaatatcgttcgaaaggcgaatattacctttgttcatgtctaaaccaaaataataaaactaatgtacatcgcaccccagggggcttattgtacatccgtcaatggaacaacatgcaatacgtatcaaatgcagcatttctcctcatggtgtactccgatcatctcagggaaactaatcaaatggctagatgtgaacgtcgttccgtgggccccgaagaaatcttcgcgtttgcaaaatcacaggttgactatatcttgggtttgaacccgcgaggtgtgagctacttggttggctacggacctaagtatccccaaagggtgcaccataggggtgcatcggtggtctcattcaaaaagcgtaaaaatttcataagttgtacccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="69346" stop="66342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69046" g_stop="68927" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68926" i_stop="67207" i_length="1720">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67206" g_stop="66916" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="411" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66915" i_stop="66783" i_length="133">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66782" g_stop="66642" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="552" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E307120" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69046" e_stop="68927"/>
          <exon e_start="67206" e_stop="66916"/>
          <exon e_start="66782" e_stop="66642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTCATTATTTAAAATATGCATTACAAAATGCTCAATCTTTTGGGGGTACGACTTGGGCCATTTCAGAATTTAGTTGGGATGTCAAATACGCTGGCCTTCAACTACTCGCCGCTACGGTAAATTTTGATTTTAGTTCTTCTGATATAATATAAGATTACACATATTTGATTTTTCGTTCGTTTTAAGTCATTCCACTATTAAATTATATACGTGCTAATGTTAAACTGGTAATATATATATTTTTCTATATATAATAGGATAAAAGGTTAGATGTGTTGAGTCATAAGTATATTATGAGGACCAGAATTAGAATTTATAAATAATTGAGGGATCAAAAGTGTTATTCCTACGACTTTTATCGATTATTTTAATATTTTACCAAAAAAAAAAAGTTGTCAATGTTTAGAATTTAATAAGTGTTATTATATTAGGCTTTTTTTAGTTAGTTAAGTGAGTACATAAATTAATTTGAAAAACTTTGATTTTGATGTGTTACCTTAATTTAGTTCATCTATCGTTTGATTAGGTAGAAAATATATGCTTTAGTTGTTATTCCTATTTTATACTTATATTTATATATTATTGAGAAATGATAATACATATGAATGCATGCGTGGTATATGATTATTTTCACTAGTCTTTTTAATTTTTAGACATGTACTTAATTACTTGCATTTACATTACATAGTCAAAATTAGGAAAAATGTCAATAAAATTATGTGTTTTTTTGACACATGTTGAGAGTCATAGATGTACGCTGTGAAAATAGTGAAACATTTAAATGTGATTATTTTCATAGAAACAATATTTTGTACTTTAGAATATATACAAACAACATATCGTCACACTTTATGTTAAATCAAGTTATTAATGGTCGGAATTAGAATATAATTAGTCCAAAATCAATAAATATAAACATAATGAGTTCCCTCCATAATTTTGTCACTAATCTAGACTCTTTTTCAACGTAATCCATGTTCTACGGTTAAGAAATCTCCATTTCGGAAAATAATTTAAATTATATCCAATACTTGTAATTTAACTTGTTATAACAAGTTATTTATGCAACGTCTATACTATAAATGTCATTATTAAGTAATGTTCATCGAATTGAATTATCTGCAATTGTCATGTGTTGGGGACAAAATTTATACCTTTAGTGCATAGAATTTAAATTTGACGGAAAATGACATGTATCTATTAAATTAGGTAAGTTTTGACACATGTTGAGATGTCGATGTAGGCTCAAGAAAATAGTGATGATTTTATGTTAGATTGGTTAATTAATTTCATAGAGACAACAAGGGACCCTTGTCCTTGTGAATACAAACACCATATGTTAGGCAAAATCTTCTCATAAAGTAAGTTGTTTGTGGAGAGATATAGATAGTTAGTCCAAAATCAAATAGAGAACCAATCAATAATTTTCTTTCTCAAATTTTAGTCCACTAATTTGTTTTTTCTTATGGTTGAAGAACATAATAATGTCTTAATTTATGACATTTGGTCATTGGTATGTCCCCTAAATCGACGATATAAAGATTTCTTACACTATTAAATATAATTTAGATAAAAGTTTATATAATCGAGCTAACTGGTTTAAGTTCATCATATCAACTACTCATAATTATTACAAAATGTTACCTATACACTCATTTTGCATATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATATATTTTCATACTATCGATGCATAAAACTTAAGCTCTTGTTTCTGCAGTTACCGAGGCAAGATAAGAGAGAGAAAGAAGACGATAAAATTATCGAAGAATATCGTTCGAAAGGCGAATATTACCTTTGTTCATGTCTAAACCAAAATAATAAAACTAATGTACATCGCACCCCAGGGGGCTTATTGTACATCCGTCAATGGAACAACATGCAATACGTATCAAATGCAGCATTTCTCCTCATGGTGTACTCCGATCATCTCAGGGAAACTAATCAAATGGCTAGATGTGAACGTCGTTCCGTGGGCCCCGAAGAAATCTTCGCGTTTGCAAAATCACAGGTTAAATTTTAATTTTTACGAGATATTATAATAACTTCGACTTACTTTGATGTGATTTTATAAATTCGCAATATGTTGTATACGTATGTTAGTGCTCATTAGCTAACCGATTTTACCTCATGAAAAATATCAGGTTGACTATATCTTGGGTTTGAACCCGCGAGGTGTGAGCTACTTGGTTGGCTACGGACCTAAGTATCCCCAAAGGGTGCACCATAGGGGTGCATCGGTGGTCTCATTCAAAAAGCGTAAAAATTTCATAAGTTGTACCCAA</genome_strand>
        <mrna_strand>AAATCTCATTATTTAAAATATGCATTACAAAATGCTCAATCTTTTGGGGGTACGACTTGGGCCATTTCAGAATTTAGTTGGGATGTCAAATACGCTGGCCTTCAACTACTCGCCGCTACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCGAGGCAAGATAAGAGAGAGAAAGAAGACGATAAAATTATCGAAGAATATCGTTCGAAAGGCGAATATTACCTTTGTTCATGTCTAAACCAAAATAATAAAACTAATGTACATCGCACCCCAGGGGGCTTATTGTACATCCGTCAATGGAACAACATGCAATACGTATCAAATGCAGCATTTCTCCTCATGGTGTACTCCGATCATCTCAGGGAAACTAATCAAATGGCTAGATGTGAACGTCGTTCCGTGGGCCCCGAAGAAATCTTCGCGTTTGCAAAATCACAG.....................................................................................................................................GTTGACTATATCTTGGGTTTGAACCCGCGAGGTGTGAGCTACTTGGTTGGCTACGGACCTAAGTATCCCCAAAGGGTGCACCATAGGGGTGCATCGGTGGTCTCATTCAAAAAGCGTAAAAATTTCATAAGTTGTACCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307200" ref_strand="+" ref_description="SGN-E307200 [cLEY-15-J9]">
      <seq>aaatctcattatttaaaatatgcattacaaaatgctcaatcttttgggggtaccgacttgggccatttcagaatttagttgggatgtcaaatacgctggccttcaactactcgccgctacgttaccgaggcaagataagagagagaaagaagacgataaaattatcgaagaatatcgttcgaaaggcgaatattacctttgttcatgtctaaaccaaaataataaaactaatgtacatcgcaccccagggggcttattgtacatccgtcaatggaacaacatgcaatacgtatcaaatgcagcatttctcctcatggtgtactccgatcatctcagggaaactaatcaaatggctagatgtgaacgtcgttccgtgggccccgaagaaatcttcgcgtttgcaaaatcacaggttgactatatcttgggtttgaacccgcgaggtgtgagctacttggttggctacggacctaagtatccccaaagggtgcaccataggggtgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="69346" stop="66389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69046" g_stop="68927" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68926" i_stop="67207" i_length="1720">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67206" g_stop="66916" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="412" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66915" i_stop="66783" i_length="133">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66782" g_stop="66689" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="506" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E307200" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69046" e_stop="68927"/>
          <exon e_start="67206" e_stop="66916"/>
          <exon e_start="66782" e_stop="66689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTCATTATTTAAAATATGCATTACAAAATGCTCAATCTTTTGGGGGTA-CGACTTGGGCCATTTCAGAATTTAGTTGGGATGTCAAATACGCTGGCCTTCAACTACTCGCCGCTACGGTAAATTTTGATTTTAGTTCTTCTGATATAATATAAGATTACACATATTTGATTTTTCGTTCGTTTTAAGTCATTCCACTATTAAATTATATACGTGCTAATGTTAAACTGGTAATATATATATTTTTCTATATATAATAGGATAAAAGGTTAGATGTGTTGAGTCATAAGTATATTATGAGGACCAGAATTAGAATTTATAAATAATTGAGGGATCAAAAGTGTTATTCCTACGACTTTTATCGATTATTTTAATATTTTACCAAAAAAAAAAAGTTGTCAATGTTTAGAATTTAATAAGTGTTATTATATTAGGCTTTTTTTAGTTAGTTAAGTGAGTACATAAATTAATTTGAAAAACTTTGATTTTGATGTGTTACCTTAATTTAGTTCATCTATCGTTTGATTAGGTAGAAAATATATGCTTTAGTTGTTATTCCTATTTTATACTTATATTTATATATTATTGAGAAATGATAATACATATGAATGCATGCGTGGTATATGATTATTTTCACTAGTCTTTTTAATTTTTAGACATGTACTTAATTACTTGCATTTACATTACATAGTCAAAATTAGGAAAAATGTCAATAAAATTATGTGTTTTTTTGACACATGTTGAGAGTCATAGATGTACGCTGTGAAAATAGTGAAACATTTAAATGTGATTATTTTCATAGAAACAATATTTTGTACTTTAGAATATATACAAACAACATATCGTCACACTTTATGTTAAATCAAGTTATTAATGGTCGGAATTAGAATATAATTAGTCCAAAATCAATAAATATAAACATAATGAGTTCCCTCCATAATTTTGTCACTAATCTAGACTCTTTTTCAACGTAATCCATGTTCTACGGTTAAGAAATCTCCATTTCGGAAAATAATTTAAATTATATCCAATACTTGTAATTTAACTTGTTATAACAAGTTATTTATGCAACGTCTATACTATAAATGTCATTATTAAGTAATGTTCATCGAATTGAATTATCTGCAATTGTCATGTGTTGGGGACAAAATTTATACCTTTAGTGCATAGAATTTAAATTTGACGGAAAATGACATGTATCTATTAAATTAGGTAAGTTTTGACACATGTTGAGATGTCGATGTAGGCTCAAGAAAATAGTGATGATTTTATGTTAGATTGGTTAATTAATTTCATAGAGACAACAAGGGACCCTTGTCCTTGTGAATACAAACACCATATGTTAGGCAAAATCTTCTCATAAAGTAAGTTGTTTGTGGAGAGATATAGATAGTTAGTCCAAAATCAAATAGAGAACCAATCAATAATTTTCTTTCTCAAATTTTAGTCCACTAATTTGTTTTTTCTTATGGTTGAAGAACATAATAATGTCTTAATTTATGACATTTGGTCATTGGTATGTCCCCTAAATCGACGATATAAAGATTTCTTACACTATTAAATATAATTTAGATAAAAGTTTATATAATCGAGCTAACTGGTTTAAGTTCATCATATCAACTACTCATAATTATTACAAAATGTTACCTATACACTCATTTTGCATATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATATATTTTCATACTATCGATGCATAAAACTTAAGCTCTTGTTTCTGCAGTTACCGAGGCAAGATAAGAGAGAGAAAGAAGACGATAAAATTATCGAAGAATATCGTTCGAAAGGCGAATATTACCTTTGTTCATGTCTAAACCAAAATAATAAAACTAATGTACATCGCACCCCAGGGGGCTTATTGTACATCCGTCAATGGAACAACATGCAATACGTATCAAATGCAGCATTTCTCCTCATGGTGTACTCCGATCATCTCAGGGAAACTAATCAAATGGCTAGATGTGAACGTCGTTCCGTGGGCCCCGAAGAAATCTTCGCGTTTGCAAAATCACAGGTTAAATTTTAATTTTTACGAGATATTATAATAACTTCGACTTACTTTGATGTGATTTTATAAATTCGCAATATGTTGTATACGTATGTTAGTGCTCATTAGCTAACCGATTTTACCTCATGAAAAATATCAGGTTGACTATATCTTGGGTTTGAACCCGCGAGGTGTGAGCTACTTGGTTGGCTACGGACCTAAGTATCCCCAAAGGGTGCACCATAGGGGTGCAT</genome_strand>
        <mrna_strand>AAATCTCATTATTTAAAATATGCATTACAAAATGCTCAATCTTTTGGGGGTACCGACTTGGGCCATTTCAGAATTTAGTTGGGATGTCAAATACGCTGGCCTTCAACTACTCGCCGCTACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCGAGGCAAGATAAGAGAGAGAAAGAAGACGATAAAATTATCGAAGAATATCGTTCGAAAGGCGAATATTACCTTTGTTCATGTCTAAACCAAAATAATAAAACTAATGTACATCGCACCCCAGGGGGCTTATTGTACATCCGTCAATGGAACAACATGCAATACGTATCAAATGCAGCATTTCTCCTCATGGTGTACTCCGATCATCTCAGGGAAACTAATCAAATGGCTAGATGTGAACGTCGTTCCGTGGGCCCCGAAGAAATCTTCGCGTTTGCAAAATCACAG.....................................................................................................................................GTTGACTATATCTTGGGTTTGAACCCGCGAGGTGTGAGCTACTTGGTTGGCTACGGACCTAAGTATCCCCAAAGGGTGCACCATAGGGGTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206840" ref_strand="+" ref_description="SGN-E206840 [cLEC-33-C10]">
      <seq>ttgagtttggtgacaagtttagaggcaagtatgatacaagtgttggagcagccaaaggttactatccatctttgagtggttacaaagatgagttgttatgggcagctatatggctctacaaagccaccgacaaatctcattatttaaaatatgcattacaaaatgctcaatcttttgggggtacgacttgggccatttcagaatttagttgggatgtcaaatacgctggccttcaactactcgccgctacgttaccgaggcaagataagagagagaaagaagacgataaaattatcgaagaatatcgttcgaaaggcgaatattacctttgttcatgtctaaaccaaaataataaaactaatgtacatcgcaccccagggggcttattgtacatcctcaatggaacaacatgcaatacgtatcaaatgcagcatttctcctcatggtgtactccgatcatctcagggaaactaatcaaatggctagatgtgaacgtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="69477" stop="66658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69177" g_stop="68927" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68926" i_stop="67207" i_length="1720">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67206" g_stop="66958" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="499" r_length="248" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E206840" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69177" e_stop="68927"/>
          <exon e_start="67206" e_stop="66958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTTTGGTGACAAGTTTAGAGGCAAGTATGATACAAGTGTTGGAGCAGCCAAAGGTTACTATCCATCTTTGAGTGGTTACAAAGATGAGTTGTTATGGGCAGCTATATGGCTCTACAAAGCCACCGACAAATCTCATTATTTAAAATATGCATTACAAAATGCTCAATCTTTTGGGGGTACGACTTGGGCCATTTCAGAATTTAGTTGGGATGTCAAATACGCTGGCCTTCAACTACTCGCCGCTACGGTAAATTTTGATTTTAGTTCTTCTGATATAATATAAGATTACACATATTTGATTTTTCGTTCGTTTTAAGTCATTCCACTATTAAATTATATACGTGCTAATGTTAAACTGGTAATATATATATTTTTCTATATATAATAGGATAAAAGGTTAGATGTGTTGAGTCATAAGTATATTATGAGGACCAGAATTAGAATTTATAAATAATTGAGGGATCAAAAGTGTTATTCCTACGACTTTTATCGATTATTTTAATATTTTACCAAAAAAAAAAAGTTGTCAATGTTTAGAATTTAATAAGTGTTATTATATTAGGCTTTTTTTAGTTAGTTAAGTGAGTACATAAATTAATTTGAAAAACTTTGATTTTGATGTGTTACCTTAATTTAGTTCATCTATCGTTTGATTAGGTAGAAAATATATGCTTTAGTTGTTATTCCTATTTTATACTTATATTTATATATTATTGAGAAATGATAATACATATGAATGCATGCGTGGTATATGATTATTTTCACTAGTCTTTTTAATTTTTAGACATGTACTTAATTACTTGCATTTACATTACATAGTCAAAATTAGGAAAAATGTCAATAAAATTATGTGTTTTTTTGACACATGTTGAGAGTCATAGATGTACGCTGTGAAAATAGTGAAACATTTAAATGTGATTATTTTCATAGAAACAATATTTTGTACTTTAGAATATATACAAACAACATATCGTCACACTTTATGTTAAATCAAGTTATTAATGGTCGGAATTAGAATATAATTAGTCCAAAATCAATAAATATAAACATAATGAGTTCCCTCCATAATTTTGTCACTAATCTAGACTCTTTTTCAACGTAATCCATGTTCTACGGTTAAGAAATCTCCATTTCGGAAAATAATTTAAATTATATCCAATACTTGTAATTTAACTTGTTATAACAAGTTATTTATGCAACGTCTATACTATAAATGTCATTATTAAGTAATGTTCATCGAATTGAATTATCTGCAATTGTCATGTGTTGGGGACAAAATTTATACCTTTAGTGCATAGAATTTAAATTTGACGGAAAATGACATGTATCTATTAAATTAGGTAAGTTTTGACACATGTTGAGATGTCGATGTAGGCTCAAGAAAATAGTGATGATTTTATGTTAGATTGGTTAATTAATTTCATAGAGACAACAAGGGACCCTTGTCCTTGTGAATACAAACACCATATGTTAGGCAAAATCTTCTCATAAAGTAAGTTGTTTGTGGAGAGATATAGATAGTTAGTCCAAAATCAAATAGAGAACCAATCAATAATTTTCTTTCTCAAATTTTAGTCCACTAATTTGTTTTTTCTTATGGTTGAAGAACATAATAATGTCTTAATTTATGACATTTGGTCATTGGTATGTCCCCTAAATCGACGATATAAAGATTTCTTACACTATTAAATATAATTTAGATAAAAGTTTATATAATCGAGCTAACTGGTTTAAGTTCATCATATCAACTACTCATAATTATTACAAAATGTTACCTATACACTCATTTTGCATATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATATATTTTCATACTATCGATGCATAAAACTTAAGCTCTTGTTTCTGCAGTTACCGAGGCAAGATAAGAGAGAGAAAGAAGACGATAAAATTATCGAAGAATATCGTTCGAAAGGCGAATATTACCTTTGTTCATGTCTAAACCAAAATAATAAAACTAATGTACATCGCACCCCAGGGGGCTTATTGTACATCCGTCAATGGAACAACATGCAATACGTATCAAATGCAGCATTTCTCCTCATGGTGTACTCCGATCATCTCAGGGAAACTAATCAAATGGCTAGATGTGAACGTCGT</genome_strand>
        <mrna_strand>TTGAGTTTGGTGACAAGTTTAGAGGCAAGTATGATACAAGTGTTGGAGCAGCCAAAGGTTACTATCCATCTTTGAGTGGTTACAAAGATGAGTTGTTATGGGCAGCTATATGGCTCTACAAAGCCACCGACAAATCTCATTATTTAAAATATGCATTACAAAATGCTCAATCTTTTGGGGGTACGACTTGGGCCATTTCAGAATTTAGTTGGGATGTCAAATACGCTGGCCTTCAACTACTCGCCGCTACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCGAGGCAAGATAAGAGAGAGAAAGAAGACGATAAAATTATCGAAGAATATCGTTCGAAAGGCGAATATTACCTTTGTTCATGTCTAAACCAAAATAATAAAACTAATGTACATCGCACCCCAGGGGGCTTATTGTACATCC-TCAATGGAACAACATGCAATACGTATCAAATGCAGCATTTCTCCTCATGGTGTACTCCGATCATCTCAGGGAAACTAATCAAATGGCTAGATGTGAACGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551619" ref_strand="+" ref_description="SGN-E551619 [cTSB-1-E8]">
      <seq>cagagaagaagaagaagaaatatcagagaaaaatgtcaggcgtcactcaacaggaggaagagaagaagccggccggcgatcagggaggtcacattaacctcaaagtcaagagccaggatggaaatgaggtgtttttcaggatcaagagaagcacacagctgaagaagctcatgaatgcttactgtgataggcaatctgtggacttcaactctattgccttcttgtttgatggtcgccgtctcagggccgagcagactcctgatgagctcgagatggaagatggcgatgaaattgatgctatgctgcatcagactggtggatctttgtcttagattttatattggagggtttggggtatggtaaattagattatatgcggtatatgttgaccgaactttttagaatgtgtatgttagtctttactttggtggtctgataatagttgtttatggatggtcacagaatttggattttggatctttacttctagttaattatccttttattaactcttggtgtttgatatatttgtgctatgatcggtttctgggcaatggtatctattagtattaattagagatttggaggtcttgtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="78463" stop="75524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78163" g_stop="78048" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78047" i_stop="76448" i_length="1600">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76447" g_stop="76298" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="266" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76297" i_stop="76155" i_length="143">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76154" g_stop="75824" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="597" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="600" polyA_stop="650"/>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E551619" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78163" e_stop="78048"/>
          <exon e_start="76447" e_stop="76298"/>
          <exon e_start="76154" e_stop="75824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAAGAAGAAGAAGAAATATCAGAGAAAAATGTCAGGCGTCACTCAACAGGAGGAAGAGAAGAAGCCGGCCGGCGATCAGGGAGGTCACATTAACCTCAAAGTCAAGAGCCAGGTTTTTTTTTGCTTTTTTAAATTTTTTTTATTTGGCTGCAATTATATATGATGCTAATTGTTTTAGTTTTTGATCAAGTGATTAGTTTGATTGTTTTTTTTTTCTGTTTTATGGATTGTGATGTTTGTATTAGGTTTGAAAATTGTGTTAGATGAATGTTTTTTTGCAAATTAGGGCTGTTAGTCAGGCTGCTAGGCTTTGATCGTTATTCAATTTAGTAAACGGGACGGAGTAATTTGTATAAACGAGAATTTCCTGTGCTGTAGTTGTGCAGGGTTTGAAATTCGCGGAGAAAGGACATGATGATCCTTCTCCATGTTTATATCGGGTTTTTGAGCAATTTGGCGTATGCCTAACCCACACATCGCGTGCATCGTGGTTTGATCTTACTAGTAGATGGAGAGACTAAAGCCTTTGGACATAGAGGAGTATGTGGTGTTAGTTTTCCTTTTCCTGCTGATAACGGATGGCAGTAGTTTGTTTATCTGTGTTAGTTTTCAATCAGTTTAGTTTGCTTGTTTATTCGAGGTATAGATTAGCTATGCTTAATGAGTTCATCTCTGAACTCTAAAAGGGCTTGTGGGAAGAAGATAAAATGTAGATATATGGTGGCTTAGTGTAAAGATTGCTGAAAACTTTTGTATTCGATGTATAATTCAGCTATACTCATGCGTTGTGTAAGGCTCATTCTGGGGCAGCATTCCAAACAAGTTTATTTTTTCTATACCCAAGGCTTGAAGCTGAGACCTTTTGCTTATTGATTAAGGGTGGAAGGCTTGTGTTTATGTTTATTTGTTCTTAGCTTGACATAAGCATTTTGTGTGTTCAACATCCAAGAGTGTGACCCAATGGTCAATGAAGTGAAATGAGAACCAGGTTCAAATCTTAAGGAGGGCAAAAGACATTAGGTGATTTCTTCTTATGTGTCTAAATTGACCAAACCTTGGGTGAGCGGATTTAACTTGTTCTTGTGCCGGTGCGAGGTAGTAGGTATCTGGTAGTCGAGCTGCAAACAAGCTGGCTGCGTGTACCATCTTTAAACTATTAAGGAAAATATTATTAATGTATTGTGAGTGTACATGTTAAAGCTATTGTTTGTGATCATACAAATCCACTTATGCTTCCATTACCTTCATATGTATTAAAAGCTATATCTGCTTGAGCACATCCATCCCTTCTATTGGACCATTGTTCATATTCTCTTGCTGAATTCCTTGTTTTTCTTCTGCTATGTCTTATCTGATACGTTAATCATCTAAAAACTCAACTTCCTACCAGAGAAGGTTCAAAAAGCGGAGGCAAAACAATGAACGAAATGTTGAATTGTTTTGCTTTCTGAACATGCCTCATCTTTTTGGTTCATACTCTAAAGAAAAGAAACCTGTTGATCTCTGATAAGAAAACAGAATCACAAATGCTGCTTGTTAGTGTTTAAAAACTCTCTACTTTTTGTTGTTTTAGTTTGTTTGTTTATTTTTCTTGTTTTAGCTAATTTGTGGCCGGAGTAAGGTCAGTATCCTCAAAGCTTGTGGAAATGTTCTGAATGACAATAATCCACGTTCAATTCATTAACTCTCTGAAGCTGACAATTTTTTTTTAGGATGGAAATGAGGTGTTTTTCAGGATCAAGAGAAGCACACAGCTGAAGAAGCTCATGAATGCTTACTGTGATAGGCAATCTGTGGACTTCAACTCTATTGCCTTCTTGTTTGATGGTCGCCGTCTCAGGGCCGAGCAGACTCCTGATGAGGTTTTTCCTTCTCCCCTTTTCTTCACCAACCAGTGCACCTCTTCCTGCTACTTGTGTATATATATGTCCACATTTTCCCTAGACTTCATATAATCAGTAATATGTTGTCTCATTACTTTTGTTTACATAATTCTTTTTGACAGCTCGAGATGGAAGATGGCGATGAAATTGATGCTATGCTGCATCAGACTGGTGGATCTTTGTCTTAGATTTTATATTGGAGGGTTTGGGGTATGGTAAATTAGATTATATGCGGTATATGTTGACCGAACTTTTTAGAATGTGTATGTTAGTCTTTACTTTGGTGGTCTGATAATAGTTGTTTATGGATGGTCACAGAATTTGGATTTTGGATCTTTACTTCTAGTTAATTATCCTTTTATTAACTCTTGGTGTTTGATATATTTGTGCTATGATCGGTTTCTGGGCAATGGTATCTATTAGTATTAATTAGAGATTTGGAGGTCTTGTGAA</genome_strand>
        <mrna_strand>CAGAGAAGAAGAAGAAGAAATATCAGAGAAAAATGTCAGGCGTCACTCAACAGGAGGAAGAGAAGAAGCCGGCCGGCGATCAGGGAGGTCACATTAACCTCAAAGTCAAGAGCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAAATGAGGTGTTTTTCAGGATCAAGAGAAGCACACAGCTGAAGAAGCTCATGAATGCTTACTGTGATAGGCAATCTGTGGACTTCAACTCTATTGCCTTCTTGTTTGATGGTCGCCGTCTCAGGGCCGAGCAGACTCCTGATGAG...............................................................................................................................................CTCGAGATGGAAGATGGCGATGAAATTGATGCTATGCTGCATCAGACTGGTGGATCTTTGTCTTAGATTTTATATTGGAGGGTTTGGGGTATGGTAAATTAGATTATATGCGGTATATGTTGACCGAACTTTTTAGAATGTGTATGTTAGTCTTTACTTTGGTGGTCTGATAATAGTTGTTTATGGATGGTCACAGAATTTGGATTTTGGATCTTTACTTCTAGTTAATTATCCTTTTATTAACTCTTGGTGTTTGATATATTTGTGCTATGATCGGTTTCTGGGCAATGGTATCTATTAGTATTAATTAGAGATTTGGAGGTCTTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221252" ref_strand="+" ref_description="SGN-E221252 [cLEL-22-C11](-)">
      <seq>attaacctcaaagtcaagagccaggatggaaatgaggtgtttttcaggatcaagagaagcacacagctgaagaagctcatgaatgcttactgtgataggcaatctgtggacttcaactctattgccttcttgtttgatggtcgccgtctcagggccgagcagactcctgatgagctcgagatggaagatggcgatgaaattgatgctatgctgcatcagactggtggatctttgtcttagattttatattggagggtttggggtatggtaaattagattatatgcggtatatgttgaccgaactttttagaatgtgtatgttagtctttactttggtggtctgataatagttgtttatggatggtcacagaatttggattttggatctttacttctagttaattatccttttattaactcttggtgtttgatatatttgtgctatgatcggtttctgggcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="78371" stop="75567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78071" g_stop="78048" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78047" i_stop="76448" i_length="1600">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76447" g_stop="76298" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="174" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76297" i_stop="76155" i_length="143">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76154" g_stop="75868" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="461" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="462" polyA_stop="477"/>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E221252" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78071" e_stop="78048"/>
          <exon e_start="76447" e_stop="76298"/>
          <exon e_start="76154" e_stop="75868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACCTCAAAGTCAAGAGCCAGGTTTTTTTTTGCTTTTTTAAATTTTTTTTATTTGGCTGCAATTATATATGATGCTAATTGTTTTAGTTTTTGATCAAGTGATTAGTTTGATTGTTTTTTTTTTCTGTTTTATGGATTGTGATGTTTGTATTAGGTTTGAAAATTGTGTTAGATGAATGTTTTTTTGCAAATTAGGGCTGTTAGTCAGGCTGCTAGGCTTTGATCGTTATTCAATTTAGTAAACGGGACGGAGTAATTTGTATAAACGAGAATTTCCTGTGCTGTAGTTGTGCAGGGTTTGAAATTCGCGGAGAAAGGACATGATGATCCTTCTCCATGTTTATATCGGGTTTTTGAGCAATTTGGCGTATGCCTAACCCACACATCGCGTGCATCGTGGTTTGATCTTACTAGTAGATGGAGAGACTAAAGCCTTTGGACATAGAGGAGTATGTGGTGTTAGTTTTCCTTTTCCTGCTGATAACGGATGGCAGTAGTTTGTTTATCTGTGTTAGTTTTCAATCAGTTTAGTTTGCTTGTTTATTCGAGGTATAGATTAGCTATGCTTAATGAGTTCATCTCTGAACTCTAAAAGGGCTTGTGGGAAGAAGATAAAATGTAGATATATGGTGGCTTAGTGTAAAGATTGCTGAAAACTTTTGTATTCGATGTATAATTCAGCTATACTCATGCGTTGTGTAAGGCTCATTCTGGGGCAGCATTCCAAACAAGTTTATTTTTTCTATACCCAAGGCTTGAAGCTGAGACCTTTTGCTTATTGATTAAGGGTGGAAGGCTTGTGTTTATGTTTATTTGTTCTTAGCTTGACATAAGCATTTTGTGTGTTCAACATCCAAGAGTGTGACCCAATGGTCAATGAAGTGAAATGAGAACCAGGTTCAAATCTTAAGGAGGGCAAAAGACATTAGGTGATTTCTTCTTATGTGTCTAAATTGACCAAACCTTGGGTGAGCGGATTTAACTTGTTCTTGTGCCGGTGCGAGGTAGTAGGTATCTGGTAGTCGAGCTGCAAACAAGCTGGCTGCGTGTACCATCTTTAAACTATTAAGGAAAATATTATTAATGTATTGTGAGTGTACATGTTAAAGCTATTGTTTGTGATCATACAAATCCACTTATGCTTCCATTACCTTCATATGTATTAAAAGCTATATCTGCTTGAGCACATCCATCCCTTCTATTGGACCATTGTTCATATTCTCTTGCTGAATTCCTTGTTTTTCTTCTGCTATGTCTTATCTGATACGTTAATCATCTAAAAACTCAACTTCCTACCAGAGAAGGTTCAAAAAGCGGAGGCAAAACAATGAACGAAATGTTGAATTGTTTTGCTTTCTGAACATGCCTCATCTTTTTGGTTCATACTCTAAAGAAAAGAAACCTGTTGATCTCTGATAAGAAAACAGAATCACAAATGCTGCTTGTTAGTGTTTAAAAACTCTCTACTTTTTGTTGTTTTAGTTTGTTTGTTTATTTTTCTTGTTTTAGCTAATTTGTGGCCGGAGTAAGGTCAGTATCCTCAAAGCTTGTGGAAATGTTCTGAATGACAATAATCCACGTTCAATTCATTAACTCTCTGAAGCTGACAATTTTTTTTTAGGATGGAAATGAGGTGTTTTTCAGGATCAAGAGAAGCACACAGCTGAAGAAGCTCATGAATGCTTACTGTGATAGGCAATCTGTGGACTTCAACTCTATTGCCTTCTTGTTTGATGGTCGCCGTCTCAGGGCCGAGCAGACTCCTGATGAGGTTTTTCCTTCTCCCCTTTTCTTCACCAACCAGTGCACCTCTTCCTGCTACTTGTGTATATATATGTCCACATTTTCCCTAGACTTCATATAATCAGTAATATGTTGTCTCATTACTTTTGTTTACATAATTCTTTTTGACAGCTCGAGATGGAAGATGGCGATGAAATTGATGCTATGCTGCATCAGACTGGTGGATCTTTGTCTTAGATTTTATATTGGAGGGTTTGGGGTATGGTAAATTAGATTATATGCGGTATATGTTGACCGAACTTTTTAGAATGTGTATGTTAGTCTTTACTTTGGTGGTCTGATAATAGTTGTTTATGGATGGTCACAGAATTTGGATTTTGGATCTTTACTTCTAGTTAATTATCCTTTTATTAACTCTTGGTGTTTGATATATTTGTGCTATGATCGGTTTCTGGGCA</genome_strand>
        <mrna_strand>ATTAACCTCAAAGTCAAGAGCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAAATGAGGTGTTTTTCAGGATCAAGAGAAGCACACAGCTGAAGAAGCTCATGAATGCTTACTGTGATAGGCAATCTGTGGACTTCAACTCTATTGCCTTCTTGTTTGATGGTCGCCGTCTCAGGGCCGAGCAGACTCCTGATGAG...............................................................................................................................................CTCGAGATGGAAGATGGCGATGAAATTGATGCTATGCTGCATCAGACTGGTGGATCTTTGTCTTAGATTTTATATTGGAGGGTTTGGGGTATGGTAAATTAGATTATATGCGGTATATGTTGACCGAACTTTTTAGAATGTGTATGTTAGTCTTTACTTTGGTGGTCTGATAATAGTTGTTTATGGATGGTCACAGAATTTGGATTTTGGATCTTTACTTCTAGTTAATTATCCTTTTATTAACTCTTGGTGTTTGATATATTTGTGCTATGATCGGTTTCTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716427" ref_strand="+" ref_description="SGN-E716427 [FB17AB01]">
      <seq>gataagaagaagaagaaatatcagagaaaaatgtcaggcgtcactcaacaggaggaagagaagaagccggccggcgatcagggaggtcacattaacctcaaagtcaagagccaggatggaaatgaggtgtttttcaggatcaagagaagcacacagctgaagaagctcatgaatgcttactgtgataggcaatctgtggacttcaactctattgccttcttgtttgatggtcgccgtctcagggccgagcagactcctgatgagctcgagatggaagatggcgatgaaattgatgctatgctgcatcagactggtggatctttgtcttagattttatattggagggtttggggtatggtaaattagattatatgcggtatatgttgaccgaactttttagaatgtgtatgttagtctttactttggtggtctgataatagttgtttatggatggtcacagaatttggattttggatctttacttctagttaattatccttttattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="78461" stop="75612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78161" g_stop="78048" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78047" i_stop="76448" i_length="1600">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76447" g_stop="76298" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="264" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76297" i_stop="76155" i_length="143">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76154" g_stop="75912" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="507" r_length="243" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="519"/>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E716427" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78161" e_stop="78048"/>
          <exon e_start="76447" e_stop="76298"/>
          <exon e_start="76154" e_stop="75912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGAAGAAGAAGAAATATCAGAGAAAAATGTCAGGCGTCACTCAACAGGAGGAAGAGAAGAAGCCGGCCGGCGATCAGGGAGGTCACATTAACCTCAAAGTCAAGAGCCAGGTTTTTTTTTGCTTTTTTAAATTTTTTTTATTTGGCTGCAATTATATATGATGCTAATTGTTTTAGTTTTTGATCAAGTGATTAGTTTGATTGTTTTTTTTTTCTGTTTTATGGATTGTGATGTTTGTATTAGGTTTGAAAATTGTGTTAGATGAATGTTTTTTTGCAAATTAGGGCTGTTAGTCAGGCTGCTAGGCTTTGATCGTTATTCAATTTAGTAAACGGGACGGAGTAATTTGTATAAACGAGAATTTCCTGTGCTGTAGTTGTGCAGGGTTTGAAATTCGCGGAGAAAGGACATGATGATCCTTCTCCATGTTTATATCGGGTTTTTGAGCAATTTGGCGTATGCCTAACCCACACATCGCGTGCATCGTGGTTTGATCTTACTAGTAGATGGAGAGACTAAAGCCTTTGGACATAGAGGAGTATGTGGTGTTAGTTTTCCTTTTCCTGCTGATAACGGATGGCAGTAGTTTGTTTATCTGTGTTAGTTTTCAATCAGTTTAGTTTGCTTGTTTATTCGAGGTATAGATTAGCTATGCTTAATGAGTTCATCTCTGAACTCTAAAAGGGCTTGTGGGAAGAAGATAAAATGTAGATATATGGTGGCTTAGTGTAAAGATTGCTGAAAACTTTTGTATTCGATGTATAATTCAGCTATACTCATGCGTTGTGTAAGGCTCATTCTGGGGCAGCATTCCAAACAAGTTTATTTTTTCTATACCCAAGGCTTGAAGCTGAGACCTTTTGCTTATTGATTAAGGGTGGAAGGCTTGTGTTTATGTTTATTTGTTCTTAGCTTGACATAAGCATTTTGTGTGTTCAACATCCAAGAGTGTGACCCAATGGTCAATGAAGTGAAATGAGAACCAGGTTCAAATCTTAAGGAGGGCAAAAGACATTAGGTGATTTCTTCTTATGTGTCTAAATTGACCAAACCTTGGGTGAGCGGATTTAACTTGTTCTTGTGCCGGTGCGAGGTAGTAGGTATCTGGTAGTCGAGCTGCAAACAAGCTGGCTGCGTGTACCATCTTTAAACTATTAAGGAAAATATTATTAATGTATTGTGAGTGTACATGTTAAAGCTATTGTTTGTGATCATACAAATCCACTTATGCTTCCATTACCTTCATATGTATTAAAAGCTATATCTGCTTGAGCACATCCATCCCTTCTATTGGACCATTGTTCATATTCTCTTGCTGAATTCCTTGTTTTTCTTCTGCTATGTCTTATCTGATACGTTAATCATCTAAAAACTCAACTTCCTACCAGAGAAGGTTCAAAAAGCGGAGGCAAAACAATGAACGAAATGTTGAATTGTTTTGCTTTCTGAACATGCCTCATCTTTTTGGTTCATACTCTAAAGAAAAGAAACCTGTTGATCTCTGATAAGAAAACAGAATCACAAATGCTGCTTGTTAGTGTTTAAAAACTCTCTACTTTTTGTTGTTTTAGTTTGTTTGTTTATTTTTCTTGTTTTAGCTAATTTGTGGCCGGAGTAAGGTCAGTATCCTCAAAGCTTGTGGAAATGTTCTGAATGACAATAATCCACGTTCAATTCATTAACTCTCTGAAGCTGACAATTTTTTTTTAGGATGGAAATGAGGTGTTTTTCAGGATCAAGAGAAGCACACAGCTGAAGAAGCTCATGAATGCTTACTGTGATAGGCAATCTGTGGACTTCAACTCTATTGCCTTCTTGTTTGATGGTCGCCGTCTCAGGGCCGAGCAGACTCCTGATGAGGTTTTTCCTTCTCCCCTTTTCTTCACCAACCAGTGCACCTCTTCCTGCTACTTGTGTATATATATGTCCACATTTTCCCTAGACTTCATATAATCAGTAATATGTTGTCTCATTACTTTTGTTTACATAATTCTTTTTGACAGCTCGAGATGGAAGATGGCGATGAAATTGATGCTATGCTGCATCAGACTGGTGGATCTTTGTCTTAGATTTTATATTGGAGGGTTTGGGGTATGGTAAATTAGATTATATGCGGTATATGTTGACCGAACTTTTTAGAATGTGTATGTTAGTCTTTACTTTGGTGGTCTGATAATAGTTGTTTATGGATGGTCACAGAATTTGGATTTTGGATCTTTACTTCTAGTTAATTATCCTTTTATTAA</genome_strand>
        <mrna_strand>GATAAGAAGAAGAAGAAATATCAGAGAAAAATGTCAGGCGTCACTCAACAGGAGGAAGAGAAGAAGCCGGCCGGCGATCAGGGAGGTCACATTAACCTCAAAGTCAAGAGCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAAATGAGGTGTTTTTCAGGATCAAGAGAAGCACACAGCTGAAGAAGCTCATGAATGCTTACTGTGATAGGCAATCTGTGGACTTCAACTCTATTGCCTTCTTGTTTGATGGTCGCCGTCTCAGGGCCGAGCAGACTCCTGATGAG...............................................................................................................................................CTCGAGATGGAAGATGGCGATGAAATTGATGCTATGCTGCATCAGACTGGTGGATCTTTGTCTTAGATTTTATATTGGAGGGTTTGGGGTATGGTAAATTAGATTATATGCGGTATATGTTGACCGAACTTTTTAGAATGTGTATGTTAGTCTTTACTTTGGTGGTCTGATAATAGTTGTTTATGGATGGTCACAGAATTTGGATTTTGGATCTTTACTTCTAGTTAATTATCCTTTTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712567" ref_strand="+" ref_description="SGN-E712567 [FB05AH02]">
      <seq>gaaatatcagagaaaaatgtcaggcgtcactcaacaggaggaagagaagaagccggccggcgatcagggaggtcacattaacctcaaagtcaagagccaggatggaaatgaggtgtttttcaggatcaagagaagcacacagctgaagaagctcatgaatgcttactgtgataggcaatctgtggacttcaactctattgccttcttgtttgatggtcgccgtctcagggccgagcagactcctgatgagctcgagatggaagatggcgatgaaattgatgctatgctgcatcagactggtggatctttgtcttagattttatattggagggtttggggtatggtaaattagattatatgcggtatatgttgaccgaactttttagaatgtgtatgttagtctttactttggtggtctgataatagttgtttatggatggtcacagaatttggattttggatctttacttctagttaattatccttttattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="78447" stop="75612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78147" g_stop="78048" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78047" i_stop="76448" i_length="1600">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76447" g_stop="76298" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="250" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76297" i_stop="76155" i_length="143">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76154" g_stop="75912" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="493" r_length="243" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="494" polyA_stop="504"/>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E712567" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78147" e_stop="78048"/>
          <exon e_start="76447" e_stop="76298"/>
          <exon e_start="76154" e_stop="75912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATATCAGAGAAAAATGTCAGGCGTCACTCAACAGGAGGAAGAGAAGAAGCCGGCCGGCGATCAGGGAGGTCACATTAACCTCAAAGTCAAGAGCCAGGTTTTTTTTTGCTTTTTTAAATTTTTTTTATTTGGCTGCAATTATATATGATGCTAATTGTTTTAGTTTTTGATCAAGTGATTAGTTTGATTGTTTTTTTTTTCTGTTTTATGGATTGTGATGTTTGTATTAGGTTTGAAAATTGTGTTAGATGAATGTTTTTTTGCAAATTAGGGCTGTTAGTCAGGCTGCTAGGCTTTGATCGTTATTCAATTTAGTAAACGGGACGGAGTAATTTGTATAAACGAGAATTTCCTGTGCTGTAGTTGTGCAGGGTTTGAAATTCGCGGAGAAAGGACATGATGATCCTTCTCCATGTTTATATCGGGTTTTTGAGCAATTTGGCGTATGCCTAACCCACACATCGCGTGCATCGTGGTTTGATCTTACTAGTAGATGGAGAGACTAAAGCCTTTGGACATAGAGGAGTATGTGGTGTTAGTTTTCCTTTTCCTGCTGATAACGGATGGCAGTAGTTTGTTTATCTGTGTTAGTTTTCAATCAGTTTAGTTTGCTTGTTTATTCGAGGTATAGATTAGCTATGCTTAATGAGTTCATCTCTGAACTCTAAAAGGGCTTGTGGGAAGAAGATAAAATGTAGATATATGGTGGCTTAGTGTAAAGATTGCTGAAAACTTTTGTATTCGATGTATAATTCAGCTATACTCATGCGTTGTGTAAGGCTCATTCTGGGGCAGCATTCCAAACAAGTTTATTTTTTCTATACCCAAGGCTTGAAGCTGAGACCTTTTGCTTATTGATTAAGGGTGGAAGGCTTGTGTTTATGTTTATTTGTTCTTAGCTTGACATAAGCATTTTGTGTGTTCAACATCCAAGAGTGTGACCCAATGGTCAATGAAGTGAAATGAGAACCAGGTTCAAATCTTAAGGAGGGCAAAAGACATTAGGTGATTTCTTCTTATGTGTCTAAATTGACCAAACCTTGGGTGAGCGGATTTAACTTGTTCTTGTGCCGGTGCGAGGTAGTAGGTATCTGGTAGTCGAGCTGCAAACAAGCTGGCTGCGTGTACCATCTTTAAACTATTAAGGAAAATATTATTAATGTATTGTGAGTGTACATGTTAAAGCTATTGTTTGTGATCATACAAATCCACTTATGCTTCCATTACCTTCATATGTATTAAAAGCTATATCTGCTTGAGCACATCCATCCCTTCTATTGGACCATTGTTCATATTCTCTTGCTGAATTCCTTGTTTTTCTTCTGCTATGTCTTATCTGATACGTTAATCATCTAAAAACTCAACTTCCTACCAGAGAAGGTTCAAAAAGCGGAGGCAAAACAATGAACGAAATGTTGAATTGTTTTGCTTTCTGAACATGCCTCATCTTTTTGGTTCATACTCTAAAGAAAAGAAACCTGTTGATCTCTGATAAGAAAACAGAATCACAAATGCTGCTTGTTAGTGTTTAAAAACTCTCTACTTTTTGTTGTTTTAGTTTGTTTGTTTATTTTTCTTGTTTTAGCTAATTTGTGGCCGGAGTAAGGTCAGTATCCTCAAAGCTTGTGGAAATGTTCTGAATGACAATAATCCACGTTCAATTCATTAACTCTCTGAAGCTGACAATTTTTTTTTAGGATGGAAATGAGGTGTTTTTCAGGATCAAGAGAAGCACACAGCTGAAGAAGCTCATGAATGCTTACTGTGATAGGCAATCTGTGGACTTCAACTCTATTGCCTTCTTGTTTGATGGTCGCCGTCTCAGGGCCGAGCAGACTCCTGATGAGGTTTTTCCTTCTCCCCTTTTCTTCACCAACCAGTGCACCTCTTCCTGCTACTTGTGTATATATATGTCCACATTTTCCCTAGACTTCATATAATCAGTAATATGTTGTCTCATTACTTTTGTTTACATAATTCTTTTTGACAGCTCGAGATGGAAGATGGCGATGAAATTGATGCTATGCTGCATCAGACTGGTGGATCTTTGTCTTAGATTTTATATTGGAGGGTTTGGGGTATGGTAAATTAGATTATATGCGGTATATGTTGACCGAACTTTTTAGAATGTGTATGTTAGTCTTTACTTTGGTGGTCTGATAATAGTTGTTTATGGATGGTCACAGAATTTGGATTTTGGATCTTTACTTCTAGTTAATTATCCTTTTATTAA</genome_strand>
        <mrna_strand>GAAATATCAGAGAAAAATGTCAGGCGTCACTCAACAGGAGGAAGAGAAGAAGCCGGCCGGCGATCAGGGAGGTCACATTAACCTCAAAGTCAAGAGCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAAATGAGGTGTTTTTCAGGATCAAGAGAAGCACACAGCTGAAGAAGCTCATGAATGCTTACTGTGATAGGCAATCTGTGGACTTCAACTCTATTGCCTTCTTGTTTGATGGTCGCCGTCTCAGGGCCGAGCAGACTCCTGATGAG...............................................................................................................................................CTCGAGATGGAAGATGGCGATGAAATTGATGCTATGCTGCATCAGACTGGTGGATCTTTGTCTTAGATTTTATATTGGAGGGTTTGGGGTATGGTAAATTAGATTATATGCGGTATATGTTGACCGAACTTTTTAGAATGTGTATGTTAGTCTTTACTTTGGTGGTCTGATAATAGTTGTTTATGGATGGTCACAGAATTTGGATTTTGGATCTTTACTTCTAGTTAATTATCCTTTTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289851" ref_strand="+" ref_description="SGN-E289851 [cLET-9-F24]">
      <seq>ccggccggcgatcagggaggtcacattaacctcaaagtcaagagccaggatggaaatgaggtgtttttcaggatcaagagaagcacacagctgaagaagctcatgaatgcttactgtgataggcaatctgtggacttcaactctattgccttcttgtttgatggtcgccgtctcagggccgagcagactcctgatgagctcgagatggaagatggcgatgaaattgatgctatgctgcatcagactggtggatctttgtcttagattttatattggagggtttggggtatggtaaattacattatatgcggtatatgttgaccgaactttttagaatgtgtatgttagtctttactttggcggtctgataatagttgtttatggatggtcacagaatctggattttggatctttacttctagctaattatccttttattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="78395" stop="75612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78095" g_stop="78048" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78047" i_stop="76448" i_length="1600">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76447" g_stop="76298" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="198" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76297" i_stop="76155" i_length="143">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76154" g_stop="75912" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="441" r_length="243" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E289851" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78095" e_stop="78048"/>
          <exon e_start="76447" e_stop="76298"/>
          <exon e_start="76154" e_stop="75912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCCGGCGATCAGGGAGGTCACATTAACCTCAAAGTCAAGAGCCAGGTTTTTTTTTGCTTTTTTAAATTTTTTTTATTTGGCTGCAATTATATATGATGCTAATTGTTTTAGTTTTTGATCAAGTGATTAGTTTGATTGTTTTTTTTTTCTGTTTTATGGATTGTGATGTTTGTATTAGGTTTGAAAATTGTGTTAGATGAATGTTTTTTTGCAAATTAGGGCTGTTAGTCAGGCTGCTAGGCTTTGATCGTTATTCAATTTAGTAAACGGGACGGAGTAATTTGTATAAACGAGAATTTCCTGTGCTGTAGTTGTGCAGGGTTTGAAATTCGCGGAGAAAGGACATGATGATCCTTCTCCATGTTTATATCGGGTTTTTGAGCAATTTGGCGTATGCCTAACCCACACATCGCGTGCATCGTGGTTTGATCTTACTAGTAGATGGAGAGACTAAAGCCTTTGGACATAGAGGAGTATGTGGTGTTAGTTTTCCTTTTCCTGCTGATAACGGATGGCAGTAGTTTGTTTATCTGTGTTAGTTTTCAATCAGTTTAGTTTGCTTGTTTATTCGAGGTATAGATTAGCTATGCTTAATGAGTTCATCTCTGAACTCTAAAAGGGCTTGTGGGAAGAAGATAAAATGTAGATATATGGTGGCTTAGTGTAAAGATTGCTGAAAACTTTTGTATTCGATGTATAATTCAGCTATACTCATGCGTTGTGTAAGGCTCATTCTGGGGCAGCATTCCAAACAAGTTTATTTTTTCTATACCCAAGGCTTGAAGCTGAGACCTTTTGCTTATTGATTAAGGGTGGAAGGCTTGTGTTTATGTTTATTTGTTCTTAGCTTGACATAAGCATTTTGTGTGTTCAACATCCAAGAGTGTGACCCAATGGTCAATGAAGTGAAATGAGAACCAGGTTCAAATCTTAAGGAGGGCAAAAGACATTAGGTGATTTCTTCTTATGTGTCTAAATTGACCAAACCTTGGGTGAGCGGATTTAACTTGTTCTTGTGCCGGTGCGAGGTAGTAGGTATCTGGTAGTCGAGCTGCAAACAAGCTGGCTGCGTGTACCATCTTTAAACTATTAAGGAAAATATTATTAATGTATTGTGAGTGTACATGTTAAAGCTATTGTTTGTGATCATACAAATCCACTTATGCTTCCATTACCTTCATATGTATTAAAAGCTATATCTGCTTGAGCACATCCATCCCTTCTATTGGACCATTGTTCATATTCTCTTGCTGAATTCCTTGTTTTTCTTCTGCTATGTCTTATCTGATACGTTAATCATCTAAAAACTCAACTTCCTACCAGAGAAGGTTCAAAAAGCGGAGGCAAAACAATGAACGAAATGTTGAATTGTTTTGCTTTCTGAACATGCCTCATCTTTTTGGTTCATACTCTAAAGAAAAGAAACCTGTTGATCTCTGATAAGAAAACAGAATCACAAATGCTGCTTGTTAGTGTTTAAAAACTCTCTACTTTTTGTTGTTTTAGTTTGTTTGTTTATTTTTCTTGTTTTAGCTAATTTGTGGCCGGAGTAAGGTCAGTATCCTCAAAGCTTGTGGAAATGTTCTGAATGACAATAATCCACGTTCAATTCATTAACTCTCTGAAGCTGACAATTTTTTTTTAGGATGGAAATGAGGTGTTTTTCAGGATCAAGAGAAGCACACAGCTGAAGAAGCTCATGAATGCTTACTGTGATAGGCAATCTGTGGACTTCAACTCTATTGCCTTCTTGTTTGATGGTCGCCGTCTCAGGGCCGAGCAGACTCCTGATGAGGTTTTTCCTTCTCCCCTTTTCTTCACCAACCAGTGCACCTCTTCCTGCTACTTGTGTATATATATGTCCACATTTTCCCTAGACTTCATATAATCAGTAATATGTTGTCTCATTACTTTTGTTTACATAATTCTTTTTGACAGCTCGAGATGGAAGATGGCGATGAAATTGATGCTATGCTGCATCAGACTGGTGGATCTTTGTCTTAGATTTTATATTGGAGGGTTTGGGGTATGGTAAATTAGATTATATGCGGTATATGTTGACCGAACTTTTTAGAATGTGTATGTTAGTCTTTACTTTGGTGGTCTGATAATAGTTGTTTATGGATGGTCACAGAATTTGGATTTTGGATCTTTACTTCTAGTTAATTATCCTTTTATTAA</genome_strand>
        <mrna_strand>CCGGCCGGCGATCAGGGAGGTCACATTAACCTCAAAGTCAAGAGCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAAATGAGGTGTTTTTCAGGATCAAGAGAAGCACACAGCTGAAGAAGCTCATGAATGCTTACTGTGATAGGCAATCTGTGGACTTCAACTCTATTGCCTTCTTGTTTGATGGTCGCCGTCTCAGGGCCGAGCAGACTCCTGATGAG...............................................................................................................................................CTCGAGATGGAAGATGGCGATGAAATTGATGCTATGCTGCATCAGACTGGTGGATCTTTGTCTTAGATTTTATATTGGAGGGTTTGGGGTATGGTAAATTACATTATATGCGGTATATGTTGACCGAACTTTTTAGAATGTGTATGTTAGTCTTTACTTTGGCGGTCTGATAATAGTTGTTTATGGATGGTCACAGAATCTGGATTTTGGATCTTTACTTCTAGCTAATTATCCTTTTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="83596" stop="82516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83296" g_stop="82816" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83296" e_stop="82816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATTTAGGAGATCAGAGTGTCACGCACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATAAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGCATTGAGGCTTGAGTCCTCATTTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGA-TTTATGATATTACTTGATATATATATATTGATTTTTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCAACTCAACCGCAACTCTAGCCAGTCTTCATTATTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTG--GTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="83597" stop="82762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83297" g_stop="83060" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83297" e_stop="83060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATTTAGGAGATCAGAGTGTCACGCACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATAAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGCATTGAGGCTTGAGTCCTCATTTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349726" ref_strand="+" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacacgtagatttaggggatcagagtatcacgtaccgacacaagaagattaatgaatatganggagcggaatgtcacgtaccgacacaagagaaataaagacaatgaatcttgaaagatgttatatactcaatctaatgaacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="84196" stop="82842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83896" g_stop="83459" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83458" i_stop="83424" i_length="35">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83423" g_stop="83142" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="717" r_length="282" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E349726" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83896" e_stop="83459"/>
          <exon e_start="83423" e_stop="83142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCATGCTATGTGCTTAATTGTATGCTTGCATGGATGTAATTATATAATTGTGATTATATAAGCATGATAAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTTTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGGGATGGATGCTGCCTTGGTAAGAAAGAAGGCGTGATGAATTGATAGAAAGAGATTAGGGGATCGGGTGTCACGAACCGACACATAGTATTAGGGGATCGGGTGTCACAAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCTGGTGTCACGAACCAACAGGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAATCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTATGGGATCGG-GTGTCACGAACCGACACGTAGATTTAGGAGATCAGAGTGTCACGCACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATAAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACATAG-ATTAGGGGATCGGGTGTCACGAACCGACAC...................................GTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACACGTAGATTTAGGGGATCAGAGTATCACGTACCGACACAAGAAGATTAATGAATATGANGGAGCGGAATGTCACGTACCGACACAAGAGAAATAAAGACAATGAATCTTGAAAGATGTT-ATATACTCAATCTAATGAACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="84196" stop="83194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83896" g_stop="83493" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83896" e_stop="83493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCATGCTATGTGCTTAATTGTATGCTTGCATGGATGTAATTATATAATTGTGATTATATAAGCATGATAAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTTTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGGGATGGATGCTGCCTTGGTAAGAAAGAAGGCGTGATGAATTGATAGAAAGAGATTAGGGGATCGGGTGTCACGAACCGACACATAGTATTAGGGGATCGGGTGTCACAAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720097" ref_strand="+" ref_description="SGN-E720097 [FC09DC05]">
      <seq>aatcggccgaattgaaaagaagaagagagagagagtctctctctttctttctctctattttttctatcaaccaaacagaccacaaacagtagagagagaaactcagatttatagagagagaaagtgtgaagcttttgcagataagaatcctcatctctgcttccatggctttaacgtttcatattttcccctaatttctcttcggatctcaaaaaaaaaaaaaaaaaatttaaaaaaaaattcaaacaaaaaacttttttttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="89113" stop="89968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89418" g_stop="89667" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="267" r_length="253" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E720097" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89418" e_stop="89667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAGAAGAGAGAGAGAGTCTCTCTCTTTCTTTCTCTCTATTTTTTCTATCAACCAAACAGACCACAAACAGTAGAGAGAGAAACTCAGATTTATAGAGAGAGAAAGTGTGAAGCTTTTGCAGATAAGAATCCTCATCTCTGCTTCCATGGCTTTAACGTTTCATATTTTCCCCTAATTTCTCTTCGGATCTC--AAAAAAAAAAAAAAAA-TTAAAAAAAAAATCAAACAAAAAAACTTTTTTTAAAAA</genome_strand>
        <mrna_strand>AAAAGAAGAAGAGAGAGAGAGTCTCTCTCTTTCTTTCTCTCTATTTTTTCTATCAACCAAACAGACCACAAACAGTAGAGAGAGAAACTCAGATTTATAGAGAGAGAAAGTGTGAAGCTTTTGCAGATAAGAATCCTCATCTCTGCTTCCATGGCTTTAACGTTTCATATTTTCCCCTAATTTCTCTTCGGATCTCAAAAAAAAAAAAAAAAAATTTAAAAAAAAATTCAAACAAAAAACTTTTTTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723964" ref_strand="+" ref_description="SGN-E723964 [FC22CE02]">
      <seq>ctctttctttctctcaattttttctatcaaccaaacaaaccacaaacagtagagagagaaactcaaatttatagagagagaaagtgtgaatcttttgcaaataagaatcctcatctctgcttccatggctttaacgtttcatattttcccctaatttctcttcggatctcaaaaaaaaaaaaaaaaaattaaaaaaaaattcaaacaaaaaaattttttttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="89144" stop="89968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89444" g_stop="89668" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E723964" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89444" e_stop="89668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTTTCTCTCTATTTTTTCTATCAACCAAACAGACCACAAACAGTAGAGAGAGAAACTCAGATTTATAGAGAGAGAAAGTGTGAAGCTTTTGCAGATAAGAATCCTCATCTCTGCTTCCATGGCTTTAACGTTTCATATTTTCCCCTAATTTCTCTTCGGATCTC--AAAAAAAAAAAAAAAATTAAAAAAAAAATCAAACAAAAAAACTTTTTTTAAAAAA</genome_strand>
        <mrna_strand>CTCTTTCTTTCTCTCAATTTTTTCTATCAACCAAACAAACCACAAACAGTAGAGAGAGAAACTCAAATTTATAGAGAGAGAAAGTGTGAATCTTTTGCAAATAAGAATCCTCATCTCTGCTTCCATGGCTTTAACGTTTCATATTTTCCCCTAATTTCTCTTCGGATCTCAAAAAAAAAAAAAAAAAATTAAAAAAAAATTCAAACAAAAAAATTTTTTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370578" ref_strand="+" ref_description="SGN-E370578 [TUS-27-I16]">
      <seq>tggctttaacgtttcatattttcccctaatttctcttcggatctcaaaaaaaaaaaaaaaaaaaattaaaaaaaaaatcaaacaaaaaaactttttttaaaaaatcttcggtcatgcggagaagcagagcagccgctgcggcgagacaagttccggcgacggaagttccggtaccggcaccggtggccggagaacacaacggatctggaggatctaaggagataaggttccgtggagttcgaaagagaccatggggaagatttgcagcagagattagagatccatggaagaaaactagggtttggttgggtacttttgattctgctgaagatgctgctcgtgcttatgatgcagcagctcgtactcttcgtggacctaaagctaaaactaatttccctttaccttcttctcatcatctacctccatatcctcaccatcatcagttcaaccaaagcatcaaccctaacgatccctttgtcgattcccggttatactctcaggaccacccattagtttcacagagacctactttaagcagcatgagtagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="89269" stop="90415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89569" g_stop="90115" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E370578" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89569" e_stop="90115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTTAACGTTTCATATTTTCCCCTAATTTCTCTTCGGATCTC----AAAAAAAAAAAAAAAATTAAAAAAAAAATCAAACAAAAAAACTTTTTTTAAAAAAATCTTCGGTCATGCGGAGAAGCAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTAC</genome_strand>
        <mrna_strand>TGGCTTTAACGTTTCATATTTTCCCCTAATTTCTCTTCGGATCTCAAAAAAAAAAAAAAAAAAAATTAAAAAAAAAATCAAACAAAAAAACTTTTTTT-AAAAAATCTTCGGTCATGCGGAGAAGCAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTTAAGCAGCATGAGTAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270325" ref_strand="+" ref_description="SGN-E270325 [cLEM-1-P6]">
      <seq>tggctttaacgtttcatattttcccctaatttctcttcggatctcaaaaaaaaaaaaaaaaaaaattaaaaaaaaaatcaaacaaaaaaactttttttaaaaaatcttcggtcatgcggagaagcagagcagccgctgcggcgagacaagttccggcgacggaagttccggtaccggcaccggtggccggagaacacaacggatctggaggatctaaggagataaggttccgtggagttcgaaagagaccatggggaagatttgcagcagagattagagatccatggaagaaaactagggtttggttgggtacttttgattctgctgaagatgctgctcgtgcttatgatgcagcagctcgtactcttcgtggacctaaagctaaaactaatttccctttaccttcttctcatcatctacctccatatcctcaccatcatcagttcaaccaaagcatcaaccctaacgatccctttgtcgattcccggttatactctcaggaccacccattagtttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="89269" stop="90384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89569" g_stop="90084" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E270325" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89569" e_stop="90084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTTAACGTTTCATATTTTCCCCTAATTTCTCTTCGGATCTC----AAAAAAAAAAAAAAAATTAAAAAAAAAATCAAACAAAAAAACTTTTTTTAAAAAAATCTTCGGTCATGCGGAGAAGCAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCAC</genome_strand>
        <mrna_strand>TGGCTTTAACGTTTCATATTTTCCCCTAATTTCTCTTCGGATCTCAAAAAAAAAAAAAAAAAAAATTAAAAAAAAAATCAAACAAAAAAACTTTTTTT-AAAAAATCTTCGGTCATGCGGAGAAGCAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297774" ref_strand="+" ref_description="SGN-E297774 [cLET-38-I10]">
      <seq>tcaaaaaaaaaaaaaaaaaaattaaaaaaaaaatcaaacaaaaaaactttttttaaaaaatcttcggtcatgcggagaagcagagcagccgctgcggcgagacaagttccggcgacggaagttccggtaccggcaccggtggccggagaacacaacggatctggaggatctaaggagataaggttccgtggagttcgaaagagaccatggggaagatttgcagcagagattagagatccatggaagaaaactagggtttggttgggtacttttgattctgctgaagatgctgctcgtgcttatgatgcagcagctcgtactcttcgtggacctaaagctaaaactaatttccctttaccttcttctcatcatctacctccatatcctcaccatcatcagttcaaccaaagcatcaaccctaacgatccctttgtcgattcccggttatactctcaggaccacccattagtttcacagagacctacttcaagcagcatgagtagtacggtggagtccttcagtggaccacggcagccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="89314" stop="90447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89610" g_stop="90147" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E297774" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89610" e_stop="90147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAAAA-AAAAAAAAAAAATTAAAAAAAAAATCAAACAAAAAAACTTTTTTTAAAAAAATCTTCGGTCATGCGGAGAAGCAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCTTCAGTGGACCACGGCAGCCGC</genome_strand>
        <mrna_strand>TCAAAAAAAAAAAAAAAAAAATTAAAAAAAAAATCAAACAAAAAAACTTTTTTT-AAAAAATCTTCGGTCATGCGGAGAAGCAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCTTCAGTGGACCACGGCAGCCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728123" ref_strand="+" ref_description="SGN-E728123 [LA16DB06]">
      <seq>aacaatctttttttaaaaatcttcggtcatgcggagaagcagagcagccgctgcggcgagacaagttccggcgacggaagttccggtaccggcaccggtggccggagaacacaacggatctggaggatctaaggagataaggttccgtggagttcgaaagagaccatggggaagatttgcagcagagattagagatccatggaagaaaactagggtttggttgggtacttttgattctgctgaagatgctgctcgtgcttatgatgcagcagctcgtactcttcgtggacctaaagctaaaactaatttccctttaccttcttctcatcatctacctccatatcctcaccatcatcagttcaaccaaagcatcaaccctaacgatccctttgtcgattcccggttatactctcaggaccacccattagtttcacagagacctacttcaagcagcatgagtagtacggtggagtccttcagtggaccacggcagccgccgcggcagcagacggcagcttccgtgccttccagaaagtatccccggtcaccgcctgttgtcccggacgattgccatagcgactgtgactcatcgtcttctgtcgttgaagacggtgaatgtgataacgacaacatcgcttcttcctctttcagaaagccgttgcctttcgatctaaacttaccggcaccgatggatgacttcagcgccgacgcatatgccgatgatcttcactgcacagcactatgtctttgacgaaatgatggtttgtgacccacctgtcatttgataccactgctttactagtttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="89352" stop="90758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89649" g_stop="90458" g_length="810"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E728123" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89649" e_stop="90458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTTTTTTAAAAAAATCTTCGGTCATGCGGAGAAGCAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCTTCAGTGGACCACGGCAGCCGCCGCGGCAGCAGACGGCAGCTTCCGTGCCTTCCAGAAAGTATCCCCGGTCACCGCCTGTTGTCCCGGACGATTGCCATAGCGACTGTGACTCATCGTCTTCTGTCGTTGAAGACGGTGAATGTGATAACGACAACATCGCTTCTTCCTCTTTCAGAAAGCCGTTGCCTTTCGATCTAAACTTACCGGCACCGATGGATGACTTCAGCGCCGACGCATATGCCGATGATCTTCACTGCACAGCACTATGTCTTTGACGAAATGATGGTTTGTGACCCACCTGTCATTTGATACCACTGCTTACCTAGTTTTTC</genome_strand>
        <mrna_strand>AACAATCTTTTTTT-A-AAAATCTTCGGTCATGCGGAGAAGCAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCTTCAGTGGACCACGGCAGCCGCCGCGGCAGCAGACGGCAGCTTCCGTGCCTTCCAGAAAGTATCCCCGGTCACCGCCTGTTGTCCCGGACGATTGCCATAGCGACTGTGACTCATCGTCTTCTGTCGTTGAAGACGGTGAATGTGATAACGACAACATCGCTTCTTCCTCTTTCAGAAAGCCGTTGCCTTTCGATCTAAACTTACCGGCACCGATGGATGACTTCAGCGCCGACGCATATGCCGATGATCTTCACTGCACAGCACTATGTCTTTGACGAAATGATGGTTTGTGACCCACCTGTCATTTGATACCACTGCTTTACTAGTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318119" ref_strand="+" ref_description="SGN-E318119 [cTOA-29-P9]">
      <seq>aaaaactttttttaaaaaatcttcggtcatgcggagaagcagagcagccgctgcggcgagacaagttccggcgacggaagttccggtaccggcaccggtggccggagaacacaacggatctggaggatctaaggagataaggttccgtggagttcgaaagagaccatggggaagatttgcagcagagattagagatccatggaagaaaactagggtttggttgggtacttttgattctgctgaagatgctgctcgtgcttatgatgcagcagctcgtactcttcgtggacctaaagctaaaactaatttccctttaccttcttctcatcatctacctccatatcctcaccatcatcagttcaaccaaagcatcaaccctaacgatccctttgtcgattcccggttatactctcaggaccacccattagtttcacagagacctacttcaagcagcatgagtagtacggtggagtccttcagtggaccacggcagccgccgcggcagcagacggcagcttccgtgccttccagaaagtatccccggtcaccgcctgttgtcccggacgattgccatagcgactgtgactcatcgtcttctgtcgttgaagacggtgaatgtgataacgacaacatcgcttcttcctctttcagaaagccgttgcctttcgatctaacttaccggcaccgatggatgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="89350" stop="90649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89650" g_stop="90349" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E318119" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89650" e_stop="90349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTTTTTTTAAAAAAATCTTCGGTCATGCGGAGAAGCAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCTTCAGTGGACCACGGCAGCCGCCGCGGCAGCAGACGGCAGCTTCCGTGCCTTCCAGAAAGTATCCCCGGTCACCGCCTGTTGTCCCGGACGATTGCCATAGCGACTGTGACTCATCGTCTTCTGTCGTTGAAGACGGTGAATGTGATAACGACAACATCGCTTCTTCCTCTTTCAGAAAGCCGTTGCCTTTCGATCTAAACTTACCGGCACCGATGGATGACTT</genome_strand>
        <mrna_strand>AAAAACTTTTTTTAAAA-AATCTTCGGTCATGCGGAGAAGCAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCTTCAGTGGACCACGGCAGCCGCCGCGGCAGCAGACGGCAGCTTCCGTGCCTTCCAGAAAGTATCCCCGGTCACCGCCTGTTGTCCCGGACGATTGCCATAGCGACTGTGACTCATCGTCTTCTGTCGTTGAAGACGGTGAATGTGATAACGACAACATCGCTTCTTCCTCTTTCAGAAAGCCGTTGCCTTTCGATCT-AACTTACCGGCACCGATGGATGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315847" ref_strand="+" ref_description="SGN-E315847 [cTOA-26-I11]">
      <seq>aaaaactttttttaaaaaatcttcggtcatgcggagaagcagagcagccgctgcggcgagacaagttccggcgacggaagttccggtaccggcaccggtggccggagaacacaacggatctggaggatctaaggagataaggttccgtggagttcgaaagagaccatggggaagatttgcagcagagattagagatccatggaagaaaactagggtttggttgggtacttttgattctgctgaagatgctgctcgtgcttatgatgcagcagctcgtactcttcgtggacctaaagctaaaactaatttccctttaccttcttctcatcatctacctccatatcctcaccatcatcagttcaaccaaagcatcaaccctaacgatccctttgtcgattcccggttatactctcaggaccacccattagtttcacagagacctacttcaagcagcatgagtagtacggtggagtccttcagtggaccacggcagccgccgcggcagcagacggcagcttccgtgccttccagaaagtatccccggtcaccgcctgttgtcccggacgattgccatagcgactgtgactcatcgtcttctgtcgttgaagacggtgaatgtgataacgancacatcgcttcttcctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="89350" stop="90597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89650" g_stop="90297" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E315847" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89650" e_stop="90297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTTTTTTTAAAAAAATCTTCGGTCATGCGGAGAAGCAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCTTCAGTGGACCACGGCAGCCGCCGCGGCAGCAGACGGCAGCTTCCGTGCCTTCCAGAAAGTATCCCCGGTCACCGCCTGTTGTCCCGGACGATTGCCATAGCGACTGTGACTCATCGTCTTCTGTCGTTGAAGACGGTGAATGTGATAACGACAACATCGCTTCTTCCTCTT</genome_strand>
        <mrna_strand>AAAAACTTTTTTTAAAA-AATCTTCGGTCATGCGGAGAAGCAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCTTCAGTGGACCACGGCAGCCGCCGCGGCAGCAGACGGCAGCTTCCGTGCCTTCCAGAAAGTATCCCCGGTCACCGCCTGTTGTCCCGGACGATTGCCATAGCGACTGTGACTCATCGTCTTCTGTCGTTGAAGACGGTGAATGTGATAACGANCACATCGCTTCTTCCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315931" ref_strand="+" ref_description="SGN-E315931 [cTOA-26-J3]">
      <seq>aaaaactttttttagaaatcttcggtcatgcggagaagcagagcagccgctgcggcgagacaagttccggcgacggaagttccggtaccggcaccggtggccggagaacacaacggatctggaggatctaaggagataaggttccgtggagttcgaaagagaccatggggaagatttgcagcagagattacagatccatggaagaaaactagggtttggttgggtacttttgattctgctgaagatgctgctcgtgcttatgatgcagcagctcgtactcttcgtggacctagagctaaaactaatttccctttaccttcttctcatcatctacctccatatcctcaccatcatcaggtcaaccaaagcatcaaccctaacgatccctttgtcgattcccggttatactctcatgaccacccattagtttcacagagacctacttcaagcagcatgagtagtacggtggagtccttcagtggaccacggcagccgtcgcggcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="89358" stop="90456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89650" g_stop="90156" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E315931" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89650" e_stop="90156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTTTTTTTAAAAAAATCTTCGGTCATGCGGAGAAGCAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCTTCAGTGGACCACGGCAGCCGCCGCGGCAGC</genome_strand>
        <mrna_strand>AAAAACTTTTTTT--AGAAATCTTCGGTCATGCGGAGAAGCAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTACAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAGAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGGTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCATGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCTTCAGTGGACCACGGCAGCCGTCGCGGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396612" ref_strand="+" ref_description="SGN-E396612 [TUS-43-B16]">
      <seq>agaagcagagcagccgctgcggcgagacaagttccggcgacggaagttccggtaccggcaccggtggccggagaacacaacggatctggaggatctaaggagataaggttccgtggagttcgaaagagaccatggggaagatttgcagcagagattagagatccatggaagaaaactagggtttggttgggtacttttgattctgctgaagatgctgctcgtgcttatgatgcatcagctcgtactcttcgtggacctaaagctaaaactaatttccctttaccttcttctcatcatctacctccatatcctcaccatcatcagttcaaccaaagcatcaaccctaacgatccctttgtcgattcccggttatactctcaggaccacccattactttcacagagacctacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="89385" stop="90397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89685" g_stop="90097" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E396612" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89685" e_stop="90097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTC</genome_strand>
        <mrna_strand>AGAAGCAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCATCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTACTTTCACAGAGACCTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207493" ref_strand="+" ref_description="SGN-E207493 [cLEC-36-E12]">
      <seq>gaagcagagcagccgctgcggcgagacaagttccggcgacggaagttccggtaccggcaccggtggccggagaacacaacggatctggaggatctaaggagataaggttccgtggagttcgaaagagaccatggggaagatttgcagcagagattagagatccatggaagaaaactagggtttggttgggtacttttgattctgctgaagatgctgctcgtgcttatgatgcagcagctcgtactcttcgtggacctaaagctaaaactaatttccctttaccttcttctcatcatctacctccatatcctcaccatcatcagttcaaccaaagcatcaaccctaacgatccctttgtcgattcccggttatactctcaggaccacccattagtttcacagagacctacttcaagcagcatgagtagtacggtggagtccttcagtggaccacggcagccgccgcggcagcagacggcagcttccgtgccttccagaaagtatccccggtcaccgcctgttgtcccggacgattgccatagcgactgtgactcatcgtcttctgtcgttgaagacggtgaatgtgataacgacaacatcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="89386" stop="90586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89686" g_stop="90286" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E207493" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89686" e_stop="90286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCTTCAGTGGACCACGGCAGCCGCCGCGGCAGCAGACGGCAGCTTCCGTGCCTTCCAGAAAGTATCCCCGGTCACCGCCTGTTGTCCCGGACGATTGCCATAGCGACTGTGACTCATCGTCTTCTGTCGTTGAAGACGGTGAATGTGATAACGACAACATCGC</genome_strand>
        <mrna_strand>GAAGCAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCTTCAGTGGACCACGGCAGCCGCCGCGGCAGCAGACGGCAGCTTCCGTGCCTTCCAGAAAGTATCCCCGGTCACCGCCTGTTGTCCCGGACGATTGCCATAGCGACTGTGACTCATCGTCTTCTGTCGTTGAAGACGGTGAATGTGATAACGACAACATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725837" ref_strand="+" ref_description="SGN-E725837 [LA05DG06]">
      <seq>gcagagcagccgctgcggcgagacaagttccggcgacggaagttccggtaccggcaccggtggccggagaacacaacggatctggaggatctaaggagataaggttccgtggagttcgaaagagaccatggggaagatttgcagcagagattagagatccatggaagaaaactagggtttggttgggtacttttgattctgctgaagatgctgctcgtgcttatgatgcagcagctcgtactcttcgtggacctaaagctaaaactaatttccctttaccttcttctcatcatctacctccatatcctcaccatcatcagttcaaccaaagcatcaaccctaacgatccctttgtcgattcccggttatactctcaggaccacccattagtttcacagagacctacttcaagcagcatgagtagtacggaggagtccttcagtggaccacggcagccgccgcggcagcagacggcagcttccgtgccttccagaaagtatccccggtcaccgactgttgtcccgggacgatgcatagcgactgtgactcatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="89389" stop="90543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89689" g_stop="90243" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E725837" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89689" e_stop="90243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCTTCAGTGGACCACGGCAGCCGCCGCGGCAGCAGACGGCAGCTTCCGTGCCTTCCAGAAAGTATCCCCGGTCACCGCCTGTTGTCCC-GGACGATTGCCATAGCGACTGTGACTCATCGT</genome_strand>
        <mrna_strand>GCAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGAGGAGTCCTTCAGTGGACCACGGCAGCCGCCGCGGCAGCAGACGGCAGCTTCCGTGCCTTCCAGAAAGTATCCCCGGTCACCGACTGTTGTCCCGGGACGA-TG-CATAGCGACTGTGACTCATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725887" ref_strand="+" ref_description="SGN-E725887 [LA08CE11]">
      <seq>gcagagcagccgctgcggcgagacaagttccggcgacggaagttccggtaccggcaccggtggccggagaacacaacggatctggaggatctaaggagataaggatccgcggagttcgaaagagaccatggggaagatttgcagcagagattatagatccatggaagaaaactagggtttggttgggtacttttgattctgctgaagatgctgctcgtgcttatgatgcagcagctcgtactcttcgtggacctaaagctaaaactaatttccctttaccttcttctcatcatgtacctccatatcctcaccatcatcagttcaaccaaagcatcaaccctaacgatccctttgtcgattcccggttatactctcaggaccacccattagtttcacagagacctacttcaagcagcatgagtagtacagtggagtccttcagtggaccacggcaggcgtcgaggcagcagacggcagcttccgtgcctttcagaaagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="89389" stop="90488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89689" g_stop="90188" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E725887" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89689" e_stop="90188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCTTCAGTGGACCACGGCAGCCGCCGCGGCAGCAGACGGCAGCTTCCGTGCCTTCCAGAAAGTAT</genome_strand>
        <mrna_strand>GCAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGATCCGCGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTATAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATGTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACAGTGGAGTCCTTCAGTGGACCACGGCAGGCGTCGAGGCAGCAGACGGCAGCTTCCGTGCCTTTCAGAAAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730279" ref_strand="+" ref_description="SGN-E730279 [LA23CE11]">
      <seq>catagcagccgctgcggcgagacaagttccggcgacggaagttccggtaccggcaccggtggccggagaacacaacggatctggaggatctaaggagataaggttccgtggagttcgaaagagaccatggggaagatttgcagcagagattagagatccatggaagaaaactagggtttggttgggtacttttgattctgctgaagatgctgctcgtgcttatgatgcagcagctcgtactcttcgtggacctaaagctaaaactaatttccctttaccttcttctcatcatctacctccatatcctcaccatcatcagttcaaccaaagcatcaaccctaacgatccctttgtcgattcccggttatactctcaggaccacccattagtttcacagagacctacttcaagcagcatgagtagtacggtggagtccttcagtggaccacggcagccgccgcggcagcagacggcagcttccgtgccttccagaaagtatccccggtcaccgcctgttgtcccggacgattgccatagcgactgtgactcatcgtcttctgtcgttgaagacggtgaatgtgataacgacaacatcgcttcttcctctttcagaaagccgttgcctttcgatctaaacttaccggcaccgatggatgacttcagcgccgacgcatatgccgatgatcttcactgcacagcactatgtctttgacgaaatgatggtttgtgacccacctgtcatttgataccactgcttacctagtttttctttcttttttgggtgaccgggaaaaaaaaccaaaaaaaaaagaggaggaaggagccataaaaaataagctaaactatgtctgctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="89390" stop="90843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89690" g_stop="90543" g_length="854"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="856" r_length="856" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E730279" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89690" e_stop="90543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCTTCAGTGGACCACGGCAGCCGCCGCGGCAGCAGACGGCAGCTTCCGTGCCTTCCAGAAAGTATCCCCGGTCACCGCCTGTTGTCCCGGACGATTGCCATAGCGACTGTGACTCATCGTCTTCTGTCGTTGAAGACGGTGAATGTGATAACGACAACATCGCTTCTTCCTCTTTCAGAAAGCCGTTGCCTTTCGATCTAAACTTACCGGCACCGATGGATGACTTCAGCGCCGACGCATATGCCGATGATCTTCACTGCACAGCACTATGTCTTTGACGAAATGATGGTTTGTGACCCACCTGTCATTTGATACCACTGCTTACCTAGTTTTTCTTTCTTTTTTGGGTGACC-GGAAAAAAAAAC-AAAAAAAAAGAAGAGGAAGGAGCCATAGAAGATAAGCTAAACTATGTCTGCTATG</genome_strand>
        <mrna_strand>CATAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCTTCAGTGGACCACGGCAGCCGCCGCGGCAGCAGACGGCAGCTTCCGTGCCTTCCAGAAAGTATCCCCGGTCACCGCCTGTTGTCCCGGACGATTGCCATAGCGACTGTGACTCATCGTCTTCTGTCGTTGAAGACGGTGAATGTGATAACGACAACATCGCTTCTTCCTCTTTCAGAAAGCCGTTGCCTTTCGATCTAAACTTACCGGCACCGATGGATGACTTCAGCGCCGACGCATATGCCGATGATCTTCACTGCACAGCACTATGTCTTTGACGAAATGATGGTTTGTGACCCACCTGTCATTTGATACCACTGCTTACCTAGTTTTTCTTTCTTTTTTGGGTGACCGGGAAAAAAAACCAAAAAAAAAAGAGGAGGAAGGAGCCATAAAAAATAAGCTAAACTATGTCTGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319186" ref_strand="+" ref_description="SGN-E319186 [cTOB-16-O20]">
      <seq>ccgctgcggcgagacaagttccggcgacggaagtttcggtaccggcaccggtggccggagaacacaacggatctggaggatctaaggagataaggtttcgtggagttcgaaagagaccatggggaagatttgcagcaaagatttgagatccatggaagaaaactagggattggttgggtacttttgattctgctgaagatgctgatagtgcttatgatgcatcagctcgtactcttcgtggacctaaagctaaaactaatttccctttaccttcttctcatgatctacctgcatatgctgaccatcatcaggtcaaccaaagcatcaaccctaacgatgcctttgtcgattcccggttatactctcatgaccacccattagtttcacagagacctacttcaagcagcatgagtagtacggcggagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="89398" stop="90426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89698" g_stop="90126" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E319186" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89698" e_stop="90126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCT</genome_strand>
        <mrna_strand>CCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTTCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTTCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAAAGATTTGAGATCCATGGAAGAAAACTAGGGATTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGATAGTGCTTATGATGCATCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATGATCTACCTGCATATGCTGACCATCATCAGGTCAACCAAAGCATCAACCCTAACGATGCCTTTGTCGATTCCCGGTTATACTCTCATGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGCGGAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698576" ref_strand="+" ref_description="SGN-E698576 [FA06DD01]">
      <seq>cccctttagataaggttccgtggagttcgaaagagaccatgggcgaagatttgcagcagagattagagatccatggaagaaaactagggtttggttgggtacttttgattctgctgaagatgctgctcgtgcttatgatgcagcagctcgtactcttcgtggacctaaagctaaaactaatttccctttaccttcttctcatcatctacctccatatcctcaccatcatcagttcaaccaaagcatcaaccctaacgatccctttgtcgattcccggttatactctcaggaccacccattagtttcacagagacctacttcaagcagcatgagtagtacggtggagtccttcagtggaccacggcagccgccgcggcagcagacggcagcttccgtgccttccagaaagtatccccggtcaccgcctgttgtcccggacgattgccatagcgactgtgactcatcgtcttctgtcgttgaagacggtgaatgtgataacgacaacatcgcttcttcctctttcagaaagccgttgcctttcgatctaaacttaccggcaccgatggatgacttcagcgccgacgcatatgccgatgatcttcactgcacagcactatgtctttgacgaaatgatggtttgtgacccacctgtcatttgataccactgcttacctagtttttctttcttttttgggtgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="89485" stop="90776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89778" g_stop="90476" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E698576" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89778" e_stop="90476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGG-GAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCTTCAGTGGACCACGGCAGCCGCCGCGGCAGCAGACGGCAGCTTCCGTGCCTTCCAGAAAGTATCCCCGGTCACCGCCTGTTGTCCCGGACGATTGCCATAGCGACTGTGACTCATCGTCTTCTGTCGTTGAAGACGGTGAATGTGATAACGACAACATCGCTTCTTCCTCTTTCAGAAAGCCGTTGCCTTTCGATCTAAACTTACCGGCACCGATGGATGACTTCAGCGCCGACGCATATGCCGATGATCTTCACTGCACAGCACTATGTCTTTGACGAAATGATGGTTTGTGACCCACCTGTCATTTGATACCACTGCTTACCTAGTTTTTCTTTCTTTTTTGGGTGACC</genome_strand>
        <mrna_strand>CCCCTTTAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGCGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCTTCAGTGGACCACGGCAGCCGCCGCGGCAGCAGACGGCAGCTTCCGTGCCTTCCAGAAAGTATCCCCGGTCACCGCCTGTTGTCCCGGACGATTGCCATAGCGACTGTGACTCATCGTCTTCTGTCGTTGAAGACGGTGAATGTGATAACGACAACATCGCTTCTTCCTCTTTCAGAAAGCCGTTGCCTTTCGATCTAAACTTACCGGCACCGATGGATGACTTCAGCGCCGACGCATATGCCGATGATCTTCACTGCACAGCACTATGTCTTTGACGAAATGATGGTTTGTGACCCACCTGTCATTTGATACCACTGCTTACCTAGTTTTTCTTTCTTTTTTGGGTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274087" ref_strand="+" ref_description="SGN-E274087 [cLEN-8-N10]">
      <seq>agatttgcagcagagattagagatccatggaagaaaactagggtttggttgggtacttttgattctgctgaagatgctgctcgtgcttatgatgcagcagctcgtactcttcgtggacctaaagctaaaactaatttccctttaccttcttctcatcatctacctccatatcctcaccatcatcagttcaaccaaagcatcaaccctaacgatccctttgtcgattcccggttatactctcaggaccacccattagtttcacagagacctacttcaagcagcatgagtagtacggtggagtccttcagtggaccacggcagccgccgcggcagcagacggcagcttccgtgccttccagaaagtatccccggtcaccgcctgttgtcccggacgattgccatagcgactgtgactcatcgtcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="89523" stop="90549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89823" g_stop="90249" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E274087" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89823" e_stop="90249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCTTCAGTGGACCACGGCAGCCGCCGCGGCAGCAGACGGCAGCTTCCGTGCCTTCCAGAAAGTATCCCCGGTCACCGCCTGTTGTCCCGGACGATTGCCATAGCGACTGTGACTCATCGTCTTCTG</genome_strand>
        <mrna_strand>AGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCTTCAGTGGACCACGGCAGCCGCCGCGGCAGCAGACGGCAGCTTCCGTGCCTTCCAGAAAGTATCCCCGGTCACCGCCTGTTGTCCCGGACGATTGCCATAGCGACTGTGACTCATCGTCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264533" ref_strand="+" ref_description="SGN-E264533 [cLEG-67-M16]">
      <seq>gatgcagcagctcgtactcttcgtggacctaaagctaaaactaatttccctttaccttcttctcatcatctacctccatatcctcaccatcatcagttcaaccaaagcatcaaccctaacgatccctttgtcgattcccggttatactctcaggaccacccattagtttcacagagacctacttcaagcagcatgagtagtacggtggagtccttcagtggaccacggcagccgccgcggcagcagacggcagcttccgtgccttccagaaagtatccccggtcaccgcctgttgtcccggacgattgccatagcgactgtgactcatcgtcttctgtcgttgaagacggtgaatgtgataacgacaacatcgcttcttcctctttcagaaagccgttgcctttcgatctaaacttaccggcaccgatggatgacttcagcgccgacgcatatgccgatgatcttcactgcacagcactatgtctttgacgaaatgatggtttgtgacccacctgtcatttgataccactgctttactagtttttctttcttttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="89613" stop="90770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89913" g_stop="90470" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E264533" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89913" e_stop="90470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCTTCAGTGGACCACGGCAGCCGCCGCGGCAGCAGACGGCAGCTTCCGTGCCTTCCAGAAAGTATCCCCGGTCACCGCCTGTTGTCCCGGACGATTGCCATAGCGACTGTGACTCATCGTCTTCTGTCGTTGAAGACGGTGAATGTGATAACGACAACATCGCTTCTTCCTCTTTCAGAAAGCCGTTGCCTTTCGATCTAAACTTACCGGCACCGATGGATGACTTCAGCGCCGACGCATATGCCGATGATCTTCACTGCACAGCACTATGTCTTTGACGAAATGATGGTTTGTGACCCACCTGTCATTTGATACCACTGCTTACCTAGTTTTTCTTTCTTTTTTGG</genome_strand>
        <mrna_strand>GATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCTTCAGTGGACCACGGCAGCCGCCGCGGCAGCAGACGGCAGCTTCCGTGCCTTCCAGAAAGTATCCCCGGTCACCGCCTGTTGTCCCGGACGATTGCCATAGCGACTGTGACTCATCGTCTTCTGTCGTTGAAGACGGTGAATGTGATAACGACAACATCGCTTCTTCCTCTTTCAGAAAGCCGTTGCCTTTCGATCTAAACTTACCGGCACCGATGGATGACTTCAGCGCCGACGCATATGCCGATGATCTTCACTGCACAGCACTATGTCTTTGACGAAATGATGGTTTGTGACCCACCTGTCATTTGATACCACTGCTTTACTAGTTTTTCTTTCTTTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287248" ref_strand="+" ref_description="SGN-E287248 [cLES-15-G1]">
      <seq>tttttttttttccggtcacccaaaaaagaaagaaaaactaggtaagcagtggtatcaaatgacaggtgggtcacaaaccatcatttcgtcaaagacatagtgctgtgcagtgaagatcatcggcatatgcgtcggcgctgaagtcatccatcggtgccggtaagtttagatcgaaaggcaacggctttctgaaagaggaagaagcgatgttgtcgttatcacattcaccgtcttcaacgacagaagacgatgagtcacagtcgctatggcaatcgtccgggacaacaggcggtgaccggggatactttctggaaggcacggaagctgccgtctgctgccgcggcggctgccgtggtccactgaaggactccaccgtactactcatgctgcttgaagtaggtctctgtgaaactaatgggtggtcctgagagtataaccgggaatcgacaaagggatcgttagggttgatgctttggttgaactgatgatggtgaggatatggaggtagatgatgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="-" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="90790" stop="89673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90489" g_stop="89973" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="-" ref_id="SGN-E287248" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90489" e_stop="89973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTTTTTTCCGGTCACCCAAAAAAGAAAGAAAAACTAGGTAAGCAGTGGTATCAAATGACAGGTGGGTCACAAACCATCATTTCGTCAAAGACATAGTGCTGTGCAGTGAAGATCATCGGCATATGCGTCGGCGCTGAAGTCATCCATCGGTGCCGGTAAGTTTAGATCGAAAGGCAACGGCTTTCTGAAAGAGGAAGAAGCGATGTTGTCGTTATCACATTCACCGTCTTCAACGACAGAAGACGATGAGTCACAGTCGCTATGGCAATCGTCCGGGACAACAGGCGGTGACCGGGGATACTTTCTGGAAGGCACGGAAGCTGCCGTCTGCTGCCGCGGCGGCTGCCGTGGTCCACTGAAGGACTCCACCGTACTACTCATGCTGCTTGAAGTAGGTCTCTGTGAAACTAATGGGTGGTCCTGAGAGTATAACCGGGAATCGACAAAGGGATCGTTAGGGTTGATGCTTTGGTTGAACTGATGATGGTGAGGATATGGAGGTAGATGATGAGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTCCGGTCACCCAAAAAAGAAAGAAAAACTAGGTAAGCAGTGGTATCAAATGACAGGTGGGTCACAAACCATCATTTCGTCAAAGACATAGTGCTGTGCAGTGAAGATCATCGGCATATGCGTCGGCGCTGAAGTCATCCATCGGTGCCGGTAAGTTTAGATCGAAAGGCAACGGCTTTCTGAAAGAGGAAGAAGCGATGTTGTCGTTATCACATTCACCGTCTTCAACGACAGAAGACGATGAGTCACAGTCGCTATGGCAATCGTCCGGGACAACAGGCGGTGACCGGGGATACTTTCTGGAAGGCACGGAAGCTGCCGTCTGCTGCCGCGGCGGCTGCCGTGGTCCACTGAAGGACTCCACCGTACTACTCATGCTGCTTGAAGTAGGTCTCTGTGAAACTAATGGGTGGTCCTGAGAGTATAACCGGGAATCGACAAAGGGATCGTTAGGGTTGATGCTTTGGTTGAACTGATGATGGTGAGGATATGGAGGTAGATGATGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396611" ref_strand="+" ref_description="SGN-E396611 [TUS-43-B16](-)">
      <seq>ccagaaagtatccccggtcaccgcctgttgtcccggacgattgccatagcgactgtgactcatcgtcttctgtcgttgaagacggtgaatgtgataacgacaacatcgcttcttcctctttcagaaagccgttgcctttcgatctaaacttaccggcaccgatggatgacttcagcgccgacgcatatgccgatgatcttcactgcacagcactatgtctttgacgaaatgatggtttgtgacccacctgtcatttgataccactgcttacctagtttttctttcttttttgggtgaccggaaaaaaaaacaaaaaaaaaagaagaggaaggagccatagaagataagctaaactatgtctgctatgagtcaatctgttgttgtaagagtattcacttgtttaatttaattctcatattttatatcatgggatttcttgataggtggatggatcagtgtatgtcaaatttgttctgattgtgtatcttaaaactatatgtgacttctcagctgaaggtgccctttgttgttcgaagtcgaatttatatatattatcgcggaagattagagggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="89878" stop="91051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90178" g_stop="90747" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="574" polyA_stop="583"/>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E396611" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90178" e_stop="90747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAAAGTATCCCCGGTCACCGCCTGTTGTCCCGGACGATTGCCATAGCGACTGTGACTCATCGTCTTCTGTCGTTGAAGACGGTGAATGTGATAACGACAACATCGCTTCTTCCTCTTTCAGAAAGCCGTTGCCTTTCGATCTAAACTTACCGGCACCGATGGATGACTTCAGCGCCGACGCATATGCCGATGATCTTCACTGCACAGCACTATGTCTTTGACGAAATGATGGTTTGTGACCCACCTGTCATTTGATACCACTGCTTACCTAGTTTTTCTTTCTTTTTTGGGTGACCGGAAAAAAAAAC-AAAAAAAAAGAAGAGGAAGGAGCCATAGAAGATAAGCTAAACTATGTCTGCTATGAGTCAATCTGTTGTTGTAAGAGTATTCACTTGTTTAATTTAATTCTCATATTTTATATCATGGGATTTCTTGATAGGTGGATGGATCAGTGTATGTCAAATTTGTTCTGATTGTGTATCTTAAAACTATATGTGACTTCTCAGCTGAAGGTGCCCTTTGTTGTTCGAAGTCGAATTTATATATATTATCGCGGAAGATTAGAGG</genome_strand>
        <mrna_strand>CCAGAAAGTATCCCCGGTCACCGCCTGTTGTCCCGGACGATTGCCATAGCGACTGTGACTCATCGTCTTCTGTCGTTGAAGACGGTGAATGTGATAACGACAACATCGCTTCTTCCTCTTTCAGAAAGCCGTTGCCTTTCGATCTAAACTTACCGGCACCGATGGATGACTTCAGCGCCGACGCATATGCCGATGATCTTCACTGCACAGCACTATGTCTTTGACGAAATGATGGTTTGTGACCCACCTGTCATTTGATACCACTGCTTACCTAGTTTTTCTTTCTTTTTTGGGTGACCGGAAAAAAAAACAAAAAAAAAAGAAGAGGAAGGAGCCATAGAAGATAAGCTAAACTATGTCTGCTATGAGTCAATCTGTTGTTGTAAGAGTATTCACTTGTTTAATTTAATTCTCATATTTTATATCATGGGATTTCTTGATAGGTGGATGGATCAGTGTATGTCAAATTTGTTCTGATTGTGTATCTTAAAACTATATGTGACTTCTCAGCTGAAGGTGCCCTTTGTTGTTCGAAGTCGAATTTATATATATTATCGCGGAAGATTAGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282171" ref_strand="+" ref_description="SGN-E282171 [cLES-4-F6]">
      <seq>tgacttcagcgccgacgcatatgccgatgatcttcactgcacagcactatgtctttgacgaaatgatggtttgtgacccacctgtcatttgataccactgcttacctagtttttctttcttttttgggtgaccggaaaaaaaaacaaaaaaaaaagaagaggaaggagccatagaagataagctaaactatgtctgctatgagtcaatctgttgttgtaagagtattcacttgtttaatttaattctcatattttatattatgggatttcttgataggtggatggatcaatgtttgtctaatttgttctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="90044" stop="90955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90344" g_stop="90655" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E282171" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90344" e_stop="90655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTCAGCGCCGACGCATATGCCGATGATCTTCACTGCACAGCACTATGTCTTTGACGAAATGATGGTTTGTGACCCACCTGTCATTTGATACCACTGCTTACCTAGTTTTTCTTTCTTTTTTGGGTGACCGGAAAAAAAAAC-AAAAAAAAAGAAGAGGAAGGAGCCATAGAAGATAAGCTAAACTATGTCTGCTATGAGTCAATCTGTTGTTGTAAGAGTATTCACTTGTTTAATTTAATTCTCATATTTTATATCATGGGATTTCTTGATAGGTGGATGGATCAGTGTATGTCAAATTTGTTCTGATT</genome_strand>
        <mrna_strand>TGACTTCAGCGCCGACGCATATGCCGATGATCTTCACTGCACAGCACTATGTCTTTGACGAAATGATGGTTTGTGACCCACCTGTCATTTGATACCACTGCTTACCTAGTTTTTCTTTCTTTTTTGGGTGACCGGAAAAAAAAACAAAAAAAAAAGAAGAGGAAGGAGCCATAGAAGATAAGCTAAACTATGTCTGCTATGAGTCAATCTGTTGTTGTAAGAGTATTCACTTGTTTAATTTAATTCTCATATTTTATATTATGGGATTTCTTGATAGGTGGATGGATCAATGTTTGTCTAATTTGTTCTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331102" ref_strand="+" ref_description="SGN-E331102 [cTOD-6-B21]">
      <seq>tttcatcaaacacaaaataaattttctgcaatttcatgggacacccgcaaaaaaacaaaaaaaaaaattaaactttttccatttttatcgaacacccagaaaaaaagattgaaactttttccatttttcatcaaatacccagaaaaacgatttaaactttctacagtttcatcaaaaacccagaaaaaaatttgatttttttcaatgggggatgaaagtaaaggcgaaagccaaagccaatctttactgaacaagaagagtatattatatgcacgtagtaaatcacatgcttacgatgaattgcgtgtatttaggagatggttgaagtggatgtgtgtggatcaatctgatacattatctactgttttgtcttggattgtttttataatatgtgtaattgctgttccatgtttgtaccatttcttattggcttgtgcagattgtgatgctaatcatgatagaccttatgataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="96978" stop="98051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97278" g_stop="97751" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E331102" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97278" e_stop="97751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCAAACAAAAAATAAATTTTCTGCAATTTCATCAAACACCCACAAAAAAACAAAAAAAAAAATTAAACTTTTTCCATTTTTATCGAACACCCAGAAAAAAAGATTGAAACTTTTTCCATTTTTCATCAAATACCCAGAAAAACGATTTAAACTTTCTACAGTTTCATCAAAAACCCAGAAAAAAATTTGATTTTTTTCAATGGGGGATGAAAGTAAAGGCGAAAGCCAAAGCCAATCTTTACTGAACAAGAAGAGTATATTATATGCACGTAGTAAATCACATGCTTACGATGAATTGCGTGTATTTAGGAGATGGTTGAAGTGGATGTGTGTGGATCAATCTGATACATTATCTACTGTTTTGTCTTGGTTTGTTTTTATAATATTTGTAATTGTTGTTCCATGTTTGTCCCATTTCTTATTGGCTTGTGCAGATTGTGATGCTAATCATGATAGACCTTATGATAAT</genome_strand>
        <mrna_strand>TTTCATCAAACACAAAATAAATTTTCTGCAATTTCATGGGACACCCGCAAAAAAACAAAAAAAAAAATTAAACTTTTTCCATTTTTATCGAACACCCAGAAAAAAAGATTGAAACTTTTTCCATTTTTCATCAAATACCCAGAAAAACGATTTAAACTTTCTACAGTTTCATCAAAAACCCAGAAAAAAATTTGATTTTTTTCAATGGGGGATGAAAGTAAAGGCGAAAGCCAAAGCCAATCTTTACTGAACAAGAAGAGTATATTATATGCACGTAGTAAATCACATGCTTACGATGAATTGCGTGTATTTAGGAGATGGTTGAAGTGGATGTGTGTGGATCAATCTGATACATTATCTACTGTTTTGTCTTGGATTGTTTTTATAATATGTGTAATTGCTGTTCCATGTTTGTACCATTTCTTATTGGCTTGTGCAGATTGTGATGCTAATCATGATAGACCTTATGATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304725" ref_strand="+" ref_description="SGN-E304725 [cLEX-11-P11]">
      <seq>atttaaactttctacagcatcattattaaccctgaatacattttgatttatttcaatgggggatgaaagtaaaggcgaaagccaaagccaatctttactgaacaagaagagtatattatatgcacgtagtaaatcacatgcttacgatgaattgcgtgtatttaggagatggttgaagtggatgtgtgtggatcaatctgatacattatctactgttttgtcttggtttgtttttataatatttgcaattgttgttccatgtttgtcccatttcttattggcttgtgcagattgtgatgctaatcatgatagaccttatgataatgttgttcagttgtctcttagaggtgttgctgctctctcttttatttgtcttactggatttgtgaagaaatttgggcttcgtacgttcttgtttcttgataagctttgtgatgaaagtgagactgtaaggaaatgctatatggaagagctcaatagatcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0047K21-eWJqo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0047K21.1" temp_strand="+" temp_description="C07SLm0047K21.1  AC232634.2 htgs_phase:2 submitted_to_sgn_as:gi|209977161|gb|AC232634.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0047K21, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="97127" stop="98211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97427" g_stop="97904" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0047K21.1" gen_strand="+" ref_id="SGN-E304725" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0047K21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97427" e_stop="97904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAAACTTTCTACAGTTTCATCAAAAACCCAGAAAAAAATTTGATTTTTTTCAATGGGGGATGAAAGTAAAGGCGAAAGCCAAAGCCAATCTTTACTGAACAAGAAGAGTATATTATATGCACGTAGTAAATCACATGCTTACGATGAATTGCGTGTATTTAGGAGATGGTTGAAGTGGATGTGTGTGGATCAATCTGATACATTATCTACTGTTTTGTCTTGGTTTGTTTTTATAATATTTGTAATTGTTGTTCCATGTTTGTCCCATTTCTTATTGGCTTGTGCAGATTGTGATGCTAATCATGATAGACCTTATGATAATGTTGTTCAGTTGTCTCTTAGTGGTGTTGCTGCTCTCTCTTTTATTTGTCTTACTGGATTTGTGAAGAAATTTGGGCTTCGTAGGTTCTTGTTTCTTGATAAGCTTTGTGATGAAAGTGAGACTGTAAGGAAATGCTATATGGAAGAGCTCAAT</genome_strand>
        <mrna_strand>ATTTAAACTTTCTACAGCATCATTATTAACCCTGAATACATTTTGATTTATTTCAATGGGGGATGAAAGTAAAGGCGAAAGCCAAAGCCAATCTTTACTGAACAAGAAGAGTATATTATATGCACGTAGTAAATCACATGCTTACGATGAATTGCGTGTATTTAGGAGATGGTTGAAGTGGATGTGTGTGGATCAATCTGATACATTATCTACTGTTTTGTCTTGGTTTGTTTTTATAATATTTGCAATTGTTGTTCCATGTTTGTCCCATTTCTTATTGGCTTGTGCAGATTGTGATGCTAATCATGATAGACCTTATGATAATGTTGTTCAGTTGTCTCTTAGAGGTGTTGCTGCTCTCTCTTTTATTTGTCTTACTGGATTTGTGAAGAAATTTGGGCTTCGTACGTTCTTGTTTCTTGATAAGCTTTGTGATGAAAGTGAGACTGTAAGGAAATGCTATATGGAAGAGCTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>97</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1250" PGL_stop="3226"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1250" e_stop="1492"/>
            <exon e_start="2227" e_stop="2857"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="0.996"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="1250" e_stop="1492" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="1493" i_stop="2226" i_length="734"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="2227" e_stop="2857" e_length="631"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1250" stop="1492"/>
              <exon start="2227" stop="2793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2275" stop="2857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554882" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACTTTTATTATATTATTATAGTTATAACTCTTTTTGGATAATATTAAATGTTTAAATTGCTAGAAAAAAATATGTGGGCTAGAATTTTATTACTTCTTTTTGTGTTTTCACTTGGAGCTTTTCTTGTTTGTGGTAGAAATTTACCAAGTGAAAATGAGTCTCTTGTTGAAAAAAAATATGGAGTTACTGATTATCAAGGTGGATTAGATGATAATATTGGAGCTGGTGGATTTGCTGCTG : GTGAGCCAACTGGGCCATCTGGACCAACTGGGCCGGGTCTAGGAGGATCCATTAGTGGTGGCGTTAGCGCCGGAGTCGGAGGAAGGTTGGGTATCGGAGCTGGGCCCGTAAGTGGAGGAGCTGAAGGTAGAGTTGGCGTTGGGATCGGTGCCGGAGCCGGTGCAGGTGTCGGCGCTGGTCCTGGCGGCATGGGCGGTGGCGCTGCCGGCAGTCCACCTGGCATTGGCATAGGTGGCAGTGGCGGAGTTAGTGGTGGAGTAAGCGGCAGCGGAAGAATTGGAGCTGGTGTAGGCGGCAGTGGCGGTGTTGGCGATAATGTTGGCGGTGGAGCAGGCGATCATGGCAGTGGAACTGGCGGAGGGTTTGGCGGCCCTGGTAGTGTAAGCGGCGGAGGGTTTGGCGGCCCTGGTAGTGGAAGCGGCGGAGGGTACGGCAGTGGATATGGCGGCGGATGGCCGTGAAATTAATGTAAACGTAAGTAGCTGTGGCGTTAGCCATTGCATTAATATTTTAGTAGTTGCATTTTAATTTCATGTTATGTGCTTTGTGAAATGTTGTGAGTAGGATGTAATGATATAATGTAATGTTGGTTAATAAATTAGTGTAATTTAATTTAGTGTTTGGTATCAGA</gDNA_template>
            <first_frame> K  T  F  I  I  L  L  *  L  *  L  F  L  D  N  I  K  C  L  N  C  *  K  K  I  C  G  L  E  F  Y  Y  F  F  L  C  F  H  L  E  L  F  L  F  V  V  E  I  Y  Q  V  K  M  S  L  L  L  K  K  N  M  E  L  L  I  I  K  V  D  *  M  I  I  L  E  L  V  D  L  L  L  :  V  S  Q  L  G  H  L  D  Q  L  G  R  V  *  E  D  P  L  V  V  A  L  A  P  E  S  E  E  G  W  V  S  E  L  G  P  *  V  E  E  L  K  V  E  L  A  L  G  S  V  P  E  P  V  Q  V  S  A  L  V  L  A  A  W  A  V  A  L  P  A  V  H  L  A  L  A  *  V  A  V  A  E  L  V  V  E  *  A  A  A  E  E  L  E  L  V  *  A  A  V  A  V  L  A  I  M  L  A  V  E  Q  A  I  M  A  V  E  L  A  E  G  L  A  A  L  V  V  *  A  A  E  G  L  A  A  L  V  V  E  A  A  E  G  T  A  V  D  M  A  A  D  G  R  E  I  N  V  N  V  S  S  C  G  V  S  H  C  I  N  I  L  V  V  A  F  *  F  H  V  M  C  F  V  K  C  C  E  *  D  V  M  I  *  C  N  V  G  *  *  I  S  V  I  *  F  S  V  W  Y  Q  </first_frame>
            <second_frame>  K  L  L  L  Y  Y  Y  S  Y  N  S  F  W  I  I  L  N  V  *  I  A  R  K  K  Y  V  G  *  N  F  I  T  S  F  C  V  F  T  W  S  F  S  C  L  W  *  K  F  T  K  *  K  *  V  S  C  *  K  K  I  W  S  Y  *  L  S  R  W  I  R  *  *  Y  W  S  W  W  I  C  C  W :   *  A  N  W  A  I  W  T  N  W  A  G  S  R  R  I  H  *  W  W  R  *  R  R  S  R  R  K  V  G  Y  R  S  W  A  R  K  W  R  S  *  R  *  S  W  R  W  D  R  C  R  S  R  C  R  C  R  R  W  S  W  R  H  G  R  W  R  C  R  Q  S  T  W  H  W  H  R  W  Q  W  R  S  *  W  W  S  K  R  Q  R  K  N  W  S  W  C  R  R  Q  W  R  C  W  R  *  C  W  R  W  S  R  R  S  W  Q  W  N  W  R  R  V  W  R  P  W  *  C  K  R  R  R  V  W  R  P  W  *  W  K  R  R  R  V  R  Q  W  I  W  R  R  M  A  V  K  L  M  *  T  *  V  A  V  A  L  A  I  A  L  I  F  *  *  L  H  F  N  F  M  L  C  A  L  *  N  V  V  S  R  M  *  *  Y  N  V  M  L  V  N  K  L  V  *  F  N  L  V  F  G  I  R </second_frame>
            <third_frame>   N  F  Y  Y  I  I  I  V  I  T  L  F  G  *  Y  *  M  F  K  L  L  E  K  N  M  W  A  R  I  L  L  L  L  F  V  F  S  L  G  A  F  L  V  C  G  R  N  L  P  S  E  N  E  S  L  V  E  K  K  Y  G  V  T  D  Y  Q  G  G  L  D  D  N  I  G  A  G  G  F  A  A   : G  E  P  T  G  P  S  G  P  T  G  P  G  L  G  G  S  I  S  G  G  V  S  A  G  V  G  G  R  L  G  I  G  A  G  P  V  S  G  G  A  E  G  R  V  G  V  G  I  G  A  G  A  G  A  G  V  G  A  G  P  G  G  M  G  G  G  A  A  G  S  P  P  G  I  G  I  G  G  S  G  G  V  S  G  G  V  S  G  S  G  R  I  G  A  G  V  G  G  S  G  G  V  G  D  N  V  G  G  G  A  G  D  H  G  S  G  T  G  G  G  F  G  G  P  G  S  V  S  G  G  G  F  G  G  P  G  S  G  S  G  G  G  Y  G  S  G  Y  G  G  G  W  P  *  N  *  C  K  R  K  *  L  W  R  *  P  L  H  *  Y  F  S  S  C  I  L  I  S  C  Y  V  L  C  E  M  L  *  V  G  C  N  D  I  M  *  C  W  L  I  N  *  C  N  L  I  *  C  L  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0047K21.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1300" stop="1492"/>
                    <exon start="2227" stop="2687"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MFKLLEKNMWARILLLLFVFSLGAFLVCGRNLPSENESLVEKKYGVTDYQGGLDDNIGAGGFAAGEPTGPSGPTGPGLGGSISGGVSAGVGGRLGIGAGPVSGGAEGRVGVGIGAGAGAGVGAGPGGMGGGAAGSPPGIGIGGSGGVSGGVSGSGRIGAGVGGSGGVGDNVGGGAGDHGSGTGGGFGGPGSVSGGGFGGPGSGSGGGYGSGYGGGWP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="1250" e_stop="1492"/>
            <exon e_start="2227" e_stop="2842"/>
            <exon e_start="3211" e_stop="3226"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="0.996"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.991"/>
          <exon-only e_score="0.812"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="1250" e_stop="1492" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="1493" i_stop="2226" i_length="734"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="2227" e_stop="2842" e_length="616"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2843" i_stop="3210" i_length="368"/>
          </intron>
          <exon e_serial="3" e_score="0.812">
            <gDNA_exon_boundary e_start="3211" e_stop="3226" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1250" stop="1492"/>
              <exon start="2227" stop="2793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2372" stop="2842"/>
              <exon start="3211" stop="3226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714625" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACTTTTATTATATTATTATAGTTATAACTCTTTTTGGATAATATTAAATGTTTAAATTGCTAGAAAAAAATATGTGGGCTAGAATTTTATTACTTCTTTTTGTGTTTTCACTTGGAGCTTTTCTTGTTTGTGGTAGAAATTTACCAAGTGAAAATGAGTCTCTTGTTGAAAAAAAATATGGAGTTACTGATTATCAAGGTGGATTAGATGATAATATTGGAGCTGGTGGATTTGCTGCTG : GTGAGCCAACTGGGCCATCTGGACCAACTGGGCCGGGTCTAGGAGGATCCATTAGTGGTGGCGTTAGCGCCGGAGTCGGAGGAAGGTTGGGTATCGGAGCTGGGCCCGTAAGTGGAGGAGCTGAAGGTAGAGTTGGCGTTGGGATCGGTGCCGGAGCCGGTGCAGGTGTCGGCGCTGGTCCTGGCGGCATGGGCGGTGGCGCTGCCGGCAGTCCACCTGGCATTGGCATAGGTGGCAGTGGCGGAGTTAGTGGTGGAGTAAGCGGCAGCGGAAGAATTGGAGCTGGTGTAGGCGGCAGTGGCGGTGTTGGCGATAATGTTGGCGGTGGAGCAGGCGATCATGGCAGTGGAACTGGCGGAGGGTTTGGCGGCCCTGGTAGTGTAAGCGGCGGAGGGTTTGGCGGCCCTGGTAGTGGAAGCGGCGGAGGGTACGGCAGTGGATATGGCGGCGGATGGCCGTGAAATTAATGTAAACGTAAGTAGCTGTGGCGTTAGCCATTGCATTAATATTTTAGTAGTTGCATTTTAATTTCATGTTATGTGCTTTGTGAAATGTTGTGAGTAGGATGTAATGATATAATGTAATGTTGGTTAATAAATTAGTGTAATTTAATTTA : ACTCAAAAAAAAAAAA</gDNA_template>
            <first_frame> K  T  F  I  I  L  L  *  L  *  L  F  L  D  N  I  K  C  L  N  C  *  K  K  I  C  G  L  E  F  Y  Y  F  F  L  C  F  H  L  E  L  F  L  F  V  V  E  I  Y  Q  V  K  M  S  L  L  L  K  K  N  M  E  L  L  I  I  K  V  D  *  M  I  I  L  E  L  V  D  L  L  L  :  V  S  Q  L  G  H  L  D  Q  L  G  R  V  *  E  D  P  L  V  V  A  L  A  P  E  S  E  E  G  W  V  S  E  L  G  P  *  V  E  E  L  K  V  E  L  A  L  G  S  V  P  E  P  V  Q  V  S  A  L  V  L  A  A  W  A  V  A  L  P  A  V  H  L  A  L  A  *  V  A  V  A  E  L  V  V  E  *  A  A  A  E  E  L  E  L  V  *  A  A  V  A  V  L  A  I  M  L  A  V  E  Q  A  I  M  A  V  E  L  A  E  G  L  A  A  L  V  V  *  A  A  E  G  L  A  A  L  V  V  E  A  A  E  G  T  A  V  D  M  A  A  D  G  R  E  I  N  V  N  V  S  S  C  G  V  S  H  C  I  N  I  L  V  V  A  F  *  F  H  V  M  C  F  V  K  C  C  E  *  D  V  M  I  *  C  N  V  G  *  *  I  S  V  I  *  F   : N  S  K  K  K   </first_frame>
            <second_frame>  K  L  L  L  Y  Y  Y  S  Y  N  S  F  W  I  I  L  N  V  *  I  A  R  K  K  Y  V  G  *  N  F  I  T  S  F  C  V  F  T  W  S  F  S  C  L  W  *  K  F  T  K  *  K  *  V  S  C  *  K  K  I  W  S  Y  *  L  S  R  W  I  R  *  *  Y  W  S  W  W  I  C  C  W :   *  A  N  W  A  I  W  T  N  W  A  G  S  R  R  I  H  *  W  W  R  *  R  R  S  R  R  K  V  G  Y  R  S  W  A  R  K  W  R  S  *  R  *  S  W  R  W  D  R  C  R  S  R  C  R  C  R  R  W  S  W  R  H  G  R  W  R  C  R  Q  S  T  W  H  W  H  R  W  Q  W  R  S  *  W  W  S  K  R  Q  R  K  N  W  S  W  C  R  R  Q  W  R  C  W  R  *  C  W  R  W  S  R  R  S  W  Q  W  N  W  R  R  V  W  R  P  W  *  C  K  R  R  R  V  W  R  P  W  *  W  K  R  R  R  V  R  Q  W  I  W  R  R  M  A  V  K  L  M  *  T  *  V  A  V  A  L  A  I  A  L  I  F  *  *  L  H  F  N  F  M  L  C  A  L  *  N  V  V  S  R  M  *  *  Y  N  V  M  L  V  N  K  L  V  *  F  N  L  :  T  Q  K  K  K  </second_frame>
            <third_frame>   N  F  Y  Y  I  I  I  V  I  T  L  F  G  *  Y  *  M  F  K  L  L  E  K  N  M  W  A  R  I  L  L  L  L  F  V  F  S  L  G  A  F  L  V  C  G  R  N  L  P  S  E  N  E  S  L  V  E  K  K  Y  G  V  T  D  Y  Q  G  G  L  D  D  N  I  G  A  G  G  F  A  A   : G  E  P  T  G  P  S  G  P  T  G  P  G  L  G  G  S  I  S  G  G  V  S  A  G  V  G  G  R  L  G  I  G  A  G  P  V  S  G  G  A  E  G  R  V  G  V  G  I  G  A  G  A  G  A  G  V  G  A  G  P  G  G  M  G  G  G  A  A  G  S  P  P  G  I  G  I  G  G  S  G  G  V  S  G  G  V  S  G  S  G  R  I  G  A  G  V  G  G  S  G  G  V  G  D  N  V  G  G  G  A  G  D  H  G  S  G  T  G  G  G  F  G  G  P  G  S  V  S  G  G  G  F  G  G  P  G  S  G  S  G  G  G  Y  G  S  G  Y  G  G  G  W  P  *  N  *  C  K  R  K  *  L  W  R  *  P  L  H  *  Y  F  S  S  C  I  L  I  S  C  Y  V  L  C  E  M  L  *  V  G  C  N  D  I  M  *  C  W  L  I  N  *  C  N  L  I  * :   L  K  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0047K21.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1300" stop="1492"/>
                    <exon start="2227" stop="2687"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MFKLLEKNMWARILLLLFVFSLGAFLVCGRNLPSENESLVEKKYGVTDYQGGLDDNIGAGGFAAGEPTGPSGPTGPGLGGSISGGVSAGVGGRLGIGAGPVSGGAEGRVGVGIGAGAGAGVGAGPGGMGGGAAGSPPGIGIGGSGGVSGGVSGSGRIGAGVGGSGGVGDNVGGGAGDHGSGTGGGFGGPGSVSGGGFGGPGSGSGGGYGSGYGGGWP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="4417" PGL_stop="2275"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4417" e_stop="4378"/>
            <exon e_start="2858" e_stop="2275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4417" e_stop="4378" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4377" i_stop="2859" i_length="1519"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="2858" e_stop="2275" e_length="584"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4417" stop="4378"/>
              <exon start="2858" stop="2275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555563" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT : CTCTGATACCAAACACTAAATTAAATTACACTAATTTATTAACCAACATTACATTATATCATTACATCCTACTCACAACATTTCACAAAGCACATAACATGAAATTAAAATGCAACTACTAAAATATTAATGCAATGGCTAACGCCACAGCTACTTACGTTTACATTAATTTCACGGCCATCCGCCGCCATATCCACTGCCGTACCCTCCGCCGCTTCCACTACCAGGGCCGCCAAACCCTCCGCCGCTTACACTACCAGGGCCGCCAAACCCTCCGCCAGTTCCACTGCCATGATCGCCTGCTCCACCGCCAACATTATCGCCAACACCGCCACTGCCGCCTACACCAGCTCCAATTCTTCCGCTGCCGCTTACTCCACCACTAACTCCGCCACTGCCACCTATGCCAATGCCAGGTGGACTGCCGGCAGCGCCACCGCCCATGCCGCCAGGACCAGCGCCGACACCTGCACCGGCTCCGGCACCGATCCCAACGCCAACTCTACCTTCAGCTCCTCCACTTACGGGCCCAGCTCCGATACCCAACCTTCCTCCGACTCCGGCGCTAACGCCACCACTAATGG</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F   : S  L  I  P  N  T  K  L  N  Y  T  N  L  L  T  N  I  T  L  Y  H  Y  I  L  L  T  T  F  H  K  A  H  N  M  K  L  K  C  N  Y  *  N  I  N  A  M  A  N  A  T  A  T  Y  V  Y  I  N  F  T  A  I  R  R  H  I  H  C  R  T  L  R  R  F  H  Y  Q  G  R  Q  T  L  R  R  L  H  Y  Q  G  R  Q  T  L  R  Q  F  H  C  H  D  R  L  L  H  R  Q  H  Y  R  Q  H  R  H  C  R  L  H  Q  L  Q  F  F  R  C  R  L  L  H  H  *  L  R  H  C  H  L  C  Q  C  Q  V  D  C  R  Q  R  H  R  P  C  R  Q  D  Q  R  R  H  L  H  R  L  R  H  R  S  Q  R  Q  L  Y  L  Q  L  L  H  L  R  A  Q  L  R  Y  P  T  F  L  R  L  R  R  *  R  H  H  *  W </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  :  L  *  Y  Q  T  L  N  *  I  T  L  I  Y  *  P  T  L  H  Y  I  I  T  S  Y  S  Q  H  F  T  K  H  I  T  *  N  *  N  A  T  T  K  I  L  M  Q  W  L  T  P  Q  L  L  T  F  T  L  I  S  R  P  S  A  A  I  S  T  A  V  P  S  A  A  S  T  T  R  A  A  K  P  S  A  A  Y  T  T  R  A  A  K  P  S  A  S  S  T  A  M  I  A  C  S  T  A  N  I  I  A  N  T  A  T  A  A  Y  T  S  S  N  S  S  A  A  A  Y  S  T  T  N  S  A  T  A  T  Y  A  N  A  R  W  T  A  G  S  A  T  A  H  A  A  R  T  S  A  D  T  C  T  G  S  G  T  D  P  N  A  N  S  T  F  S  S  S  T  Y  G  P  S  S  D  T  Q  P  S  S  D  S  G  A  N  A  T  T  N   </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F :   S  D  T  K  H  *  I  K  L  H  *  F  I  N  Q  H  Y  I  I  S  L  H  P  T  H  N  I  S  Q  S  T  *  H  E  I  K  M  Q  L  L  K  Y  *  C  N  G  *  R  H  S  Y  L  R  L  H  *  F  H  G  H  P  P  P  Y  P  L  P  Y  P  P  P  L  P  L  P  G  P  P  N  P  P  P  L  T  L  P  G  P  P  N  P  P  P  V  P  L  P  *  S  P  A  P  P  P  T  L  S  P  T  P  P  L  P  P  T  P  A  P  I  L  P  L  P  L  T  P  P  L  T  P  P  L  P  P  M  P  M  P  G  G  L  P  A  A  P  P  P  M  P  P  G  P  A  P  T  P  A  P  A  P  A  P  I  P  T  P  T  L  P  S  A  P  P  L  T  G  P  A  P  I  P  N  L  P  P  T  P  A  L  T  P  P  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0047K21.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2750" stop="2277"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NATTKILMQWLTPQLLTFTLISRPSAAISTAVPSAASTTRAAKPSAAYTTRAAKPSASSTAMIACSTANIIANTATAAYTSSNSSAAAYSTTNSATATYANARWTAGSATAHAARTSADTCTGSGTDPNANSTFSSSTYGPSSDTQPSSDSGANATTN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="5446" PGL_stop="11899"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5446" e_stop="5588"/>
            <exon e_start="5694" e_stop="5766"/>
            <exon e_start="5866" e_stop="5940"/>
            <exon e_start="6905" e_stop="6965"/>
            <exon e_start="7044" e_stop="7071"/>
            <exon e_start="8248" e_stop="8315"/>
            <exon e_start="9300" e_stop="9374"/>
            <exon e_start="9476" e_stop="9531"/>
            <exon e_start="9628" e_stop="9672"/>
            <exon e_start="9784" e_stop="10047"/>
            <exon e_start="10154" e_stop="10248"/>
            <exon e_start="10523" e_stop="10613"/>
            <exon e_start="10693" e_stop="10803"/>
            <exon e_start="11020" e_stop="11214"/>
            <exon e_start="11298" e_stop="11899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="0.870" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.561" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.473" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.853" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.610" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.819" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.917" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="5446" e_stop="5588" e_length="143"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5589" i_stop="5693" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5694" e_stop="5766" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.870" acc_prob="0.971">
            <gDNA_intron_boundary i_start="5767" i_stop="5865" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5866" e_stop="5940" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.561">
            <gDNA_intron_boundary i_start="5941" i_stop="6904" i_length="964"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6905" e_stop="6965" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.944" acc_prob="0.473">
            <gDNA_intron_boundary i_start="6966" i_stop="7043" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7044" e_stop="7071" e_length="28"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.957">
            <gDNA_intron_boundary i_start="7072" i_stop="8247" i_length="1176"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="8248" e_stop="8315" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.918" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8316" i_stop="9299" i_length="984"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="9300" e_stop="9374" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.853" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9375" i_stop="9475" i_length="101"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="9476" e_stop="9531" e_length="56"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9532" i_stop="9627" i_length="96"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="9628" e_stop="9672" e_length="45"/>
          </exon>
          <intron i_serial="9" don_prob="0.610" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9673" i_stop="9783" i_length="111"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="9784" e_stop="10047" e_length="264"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="10048" i_stop="10153" i_length="106"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="10154" e_stop="10248" e_length="95"/>
          </exon>
          <intron i_serial="11" don_prob="0.966" acc_prob="0.993">
            <gDNA_intron_boundary i_start="10249" i_stop="10522" i_length="274"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="10523" e_stop="10613" e_length="91"/>
          </exon>
          <intron i_serial="12" don_prob="0.819" acc_prob="0.999">
            <gDNA_intron_boundary i_start="10614" i_stop="10692" i_length="79"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="10693" e_stop="10803" e_length="111"/>
          </exon>
          <intron i_serial="13" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="10804" i_stop="11019" i_length="216"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="11020" e_stop="11214" e_length="195"/>
          </exon>
          <intron i_serial="14" don_prob="0.990" acc_prob="0.917">
            <gDNA_intron_boundary i_start="11215" i_stop="11297" i_length="83"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="11298" e_stop="11899" e_length="602"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5446" stop="5588"/>
              <exon start="5694" stop="5766"/>
              <exon start="5866" stop="5940"/>
              <exon start="6905" stop="6965"/>
              <exon start="7044" stop="7071"/>
              <exon start="8248" stop="8315"/>
              <exon start="9300" stop="9357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5492" stop="5588"/>
              <exon start="5694" stop="5766"/>
              <exon start="5866" stop="5940"/>
              <exon start="6905" stop="6965"/>
              <exon start="7044" stop="7071"/>
              <exon start="8248" stop="8315"/>
              <exon start="9300" stop="9374"/>
              <exon start="9476" stop="9531"/>
              <exon start="9628" stop="9672"/>
              <exon start="9784" stop="10047"/>
              <exon start="10154" stop="10248"/>
              <exon start="10523" stop="10613"/>
              <exon start="10693" stop="10803"/>
              <exon start="11020" stop="11214"/>
              <exon start="11298" stop="11824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5492" stop="5588"/>
              <exon start="5694" stop="5766"/>
              <exon start="5866" stop="5940"/>
              <exon start="6905" stop="6965"/>
              <exon start="7044" stop="7071"/>
              <exon start="8248" stop="8315"/>
              <exon start="9300" stop="9374"/>
              <exon start="9476" stop="9531"/>
              <exon start="9628" stop="9639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5493" stop="5588"/>
              <exon start="5694" stop="5766"/>
              <exon start="5866" stop="5940"/>
              <exon start="6905" stop="6965"/>
              <exon start="7044" stop="7071"/>
              <exon start="8248" stop="8315"/>
              <exon start="9300" stop="9374"/>
              <exon start="9476" stop="9531"/>
              <exon start="9628" stop="9672"/>
              <exon start="9784" stop="9837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5498" stop="5588"/>
              <exon start="5694" stop="5766"/>
              <exon start="5866" stop="5940"/>
              <exon start="6905" stop="6965"/>
              <exon start="7044" stop="7071"/>
              <exon start="8248" stop="8315"/>
              <exon start="9300" stop="9374"/>
              <exon start="9476" stop="9531"/>
              <exon start="9628" stop="9672"/>
              <exon start="9784" stop="10027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5503" stop="5588"/>
              <exon start="5694" stop="5766"/>
              <exon start="5866" stop="5940"/>
              <exon start="6905" stop="6965"/>
              <exon start="7044" stop="7054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5510" stop="5588"/>
              <exon start="5694" stop="5766"/>
              <exon start="5866" stop="5940"/>
              <exon start="6905" stop="6965"/>
              <exon start="7044" stop="7071"/>
              <exon start="8248" stop="8315"/>
              <exon start="9300" stop="9374"/>
              <exon start="9476" stop="9527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5510" stop="5588"/>
              <exon start="5694" stop="5766"/>
              <exon start="5866" stop="5940"/>
              <exon start="6905" stop="6965"/>
              <exon start="7044" stop="7071"/>
              <exon start="8248" stop="8315"/>
              <exon start="9300" stop="9374"/>
              <exon start="9476" stop="9505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5511" stop="5588"/>
              <exon start="5694" stop="5766"/>
              <exon start="5866" stop="5940"/>
              <exon start="6905" stop="6965"/>
              <exon start="7044" stop="7071"/>
              <exon start="8248" stop="8315"/>
              <exon start="9300" stop="9374"/>
              <exon start="9476" stop="9531"/>
              <exon start="9628" stop="9672"/>
              <exon start="9784" stop="9789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5513" stop="5588"/>
              <exon start="5694" stop="5766"/>
              <exon start="5866" stop="5940"/>
              <exon start="6905" stop="6965"/>
              <exon start="7044" stop="7071"/>
              <exon start="8248" stop="8315"/>
              <exon start="9300" stop="9374"/>
              <exon start="9476" stop="9531"/>
              <exon start="9628" stop="9672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5517" stop="5588"/>
              <exon start="5694" stop="5766"/>
              <exon start="5866" stop="5940"/>
              <exon start="6905" stop="6965"/>
              <exon start="7044" stop="7071"/>
              <exon start="8248" stop="8315"/>
              <exon start="9300" stop="9374"/>
              <exon start="9476" stop="9531"/>
              <exon start="9628" stop="9672"/>
              <exon start="9784" stop="9907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5518" stop="5588"/>
              <exon start="5694" stop="5766"/>
              <exon start="5866" stop="5940"/>
              <exon start="6905" stop="6965"/>
              <exon start="7044" stop="7071"/>
              <exon start="8248" stop="8315"/>
              <exon start="9300" stop="9374"/>
              <exon start="9476" stop="9531"/>
              <exon start="9628" stop="9672"/>
              <exon start="9784" stop="9789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5518" stop="5588"/>
              <exon start="5694" stop="5766"/>
              <exon start="5866" stop="5940"/>
              <exon start="6905" stop="6965"/>
              <exon start="7044" stop="7071"/>
              <exon start="8248" stop="8315"/>
              <exon start="9300" stop="9351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5521" stop="5588"/>
              <exon start="5694" stop="5766"/>
              <exon start="5866" stop="5940"/>
              <exon start="6905" stop="6965"/>
              <exon start="7044" stop="7071"/>
              <exon start="8248" stop="8315"/>
              <exon start="9300" stop="9374"/>
              <exon start="9476" stop="9531"/>
              <exon start="9628" stop="9672"/>
              <exon start="9784" stop="9811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5521" stop="5588"/>
              <exon start="5694" stop="5766"/>
              <exon start="5866" stop="5940"/>
              <exon start="6905" stop="6965"/>
              <exon start="7044" stop="7071"/>
              <exon start="8248" stop="8315"/>
              <exon start="9300" stop="9374"/>
              <exon start="9476" stop="9504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5522" stop="5588"/>
              <exon start="5694" stop="5766"/>
              <exon start="5866" stop="5940"/>
              <exon start="6905" stop="6965"/>
              <exon start="7044" stop="7071"/>
              <exon start="8248" stop="8315"/>
              <exon start="9300" stop="9374"/>
              <exon start="9476" stop="9531"/>
              <exon start="9628" stop="9672"/>
              <exon start="9784" stop="9959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5522" stop="5588"/>
              <exon start="5694" stop="5766"/>
              <exon start="5866" stop="5940"/>
              <exon start="6905" stop="6965"/>
              <exon start="7044" stop="7071"/>
              <exon start="8248" stop="8304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5525" stop="5588"/>
              <exon start="5694" stop="5766"/>
              <exon start="5866" stop="5940"/>
              <exon start="6905" stop="6954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5530" stop="5588"/>
              <exon start="5694" stop="5766"/>
              <exon start="5866" stop="5940"/>
              <exon start="6905" stop="6965"/>
              <exon start="7044" stop="7071"/>
              <exon start="8248" stop="8315"/>
              <exon start="9300" stop="9374"/>
              <exon start="9476" stop="9531"/>
              <exon start="9628" stop="9672"/>
              <exon start="9784" stop="9792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5530" stop="5588"/>
              <exon start="5694" stop="5766"/>
              <exon start="5866" stop="5940"/>
              <exon start="6905" stop="6965"/>
              <exon start="7044" stop="7071"/>
              <exon start="8248" stop="8315"/>
              <exon start="9300" stop="9370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5736" stop="5766"/>
              <exon start="5866" stop="5940"/>
              <exon start="6905" stop="6965"/>
              <exon start="7044" stop="7071"/>
              <exon start="8248" stop="8315"/>
              <exon start="9300" stop="9374"/>
              <exon start="9476" stop="9531"/>
              <exon start="9628" stop="9672"/>
              <exon start="9784" stop="9899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5764" stop="5766"/>
              <exon start="5866" stop="5940"/>
              <exon start="6905" stop="6965"/>
              <exon start="7044" stop="7071"/>
              <exon start="8248" stop="8315"/>
              <exon start="9300" stop="9343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6913" stop="6965"/>
              <exon start="7044" stop="7071"/>
              <exon start="8248" stop="8315"/>
              <exon start="9300" stop="9374"/>
              <exon start="9476" stop="9531"/>
              <exon start="9628" stop="9653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8248" stop="8315"/>
              <exon start="9300" stop="9374"/>
              <exon start="9476" stop="9531"/>
              <exon start="9628" stop="9672"/>
              <exon start="9784" stop="9960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8248" stop="8315"/>
              <exon start="9300" stop="9374"/>
              <exon start="9476" stop="9531"/>
              <exon start="9628" stop="9672"/>
              <exon start="9784" stop="9953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8282" stop="8315"/>
              <exon start="9300" stop="9374"/>
              <exon start="9476" stop="9531"/>
              <exon start="9628" stop="9672"/>
              <exon start="9784" stop="10047"/>
              <exon start="10154" stop="10248"/>
              <exon start="10523" stop="10534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9525" stop="9531"/>
              <exon start="9628" stop="9672"/>
              <exon start="9784" stop="10047"/>
              <exon start="10154" stop="10248"/>
              <exon start="10523" stop="10613"/>
              <exon start="10693" stop="10794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9663" stop="9672"/>
              <exon start="9784" stop="10047"/>
              <exon start="10154" stop="10248"/>
              <exon start="10523" stop="10613"/>
              <exon start="10693" stop="10709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10172" stop="10248"/>
              <exon start="10523" stop="10613"/>
              <exon start="10693" stop="10803"/>
              <exon start="11020" stop="11214"/>
              <exon start="11298" stop="11648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11079" stop="11214"/>
              <exon start="11298" stop="11832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355384" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11323" stop="11862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11367" stop="11899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11495" stop="11883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200384" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATATACAGTAAAAAAAAGCAAATAAAAGGTCTGAATAAAGAAAGCTTAAGCAGCTGTTCTTCGTGGGCGAAAATTCAATCGGCGCCTTCTTCTCCAACCCTACAATCTCATCAAATTTCACTCTTCTTCCATTAATATCAG : TTTTAAGAGATCGAGAGCTGCGATGTTAGGTGTTTTAAGGCGCAAAGCTATTTCTAGCGCCTCTTTTACTTCG : TGTGTAAGGAAATCTCTGCATACGGTTCGACCTGCAGTATGTAAATCTAGAATTCCATCTGCTGCTGCAGAAGAG : ATATCATTGCTTACTAGACAATGTGGTCATGTGCGAAATTTCAATCAGCTTGTGCTGCCTG : GGTGCTCATCAAATTTGCGCCCAGAAAG : GGCTGTGACCAATCTTTTCTCAAGTCCAACACTATCAAATTGGAGCAGGCCTTTCTGCGCAAATAGTG : GTGATACCGTTGACGCTGTTGTTCCATATATGGGTGAATCCATTAGTGATGGGACACTGGCCAAGTTCCTGAAGA : ATGTTGGTGACAGAGTAGAAGTTGATGAGCCAATTGCTCAGATTGAAACAGATAAG : GTAACCATTGATGTTACCAGTCCTGAAGCTGGTGTAATCCAAAAG : TTTATAGCCAAGGAAGGGGACACTGTCGAACCAGGCAATAAAGTTGCTATCATTTCAAAATCTGGTGAGGGTGTGGAACATGTTGCTCCATCTGAGAAGTCCTCTGAGAAAGTAGCTCCTGCAGCTGAGGATAAGAAAGAGGAAAAGGCAAAACCTCAAGTTGAGACAACTCCCGTCAAGGAGAAGCCTAAGGGAAGTTCACCTCCACCCCCTAAACGCTCTCCTACAGAGCTCCAACTTCCTCCCAAAGAACGGGAAAGACGA : GTTCCCATGACCAGGCTCAGAAAAAGAGTTGCCACACGTTTGAAAGATTCTCAGAACACATTTGCTTTGCTGACAACATTCAATGAAGTTGATAT : GACAAATTTGATGAAGCTCCGTTCTGATTACAAAGATGCCTTTTTTGAAAAGCATGGAGTCAAGTTAGGATTCATGTCTGGATTTGTGAAA : GCAGCAGTTAGCGCACTCCAGAATCAGCCAATTGTTAATGCTGTTATCGATGGTGATGACATCATATATAGGGATTATATAGACATCAGTATCGCTGTTGGTACACCAAAG : GGTCTTGTTGTTCCAGTTATCCGCAACGCTGAGCAGATGAATTTTGCTGAGATAGAAAAGACAATTAACTCACTTGCTAAGAAGGCAAATGATGGAAGCATATCTATTGATGAAATGGCTGGAGGGTCATTCACCATTTCAAACGGTGGAGTGTATGGAAGTCTTATCAGTACCCCTATCATTAATCCTCCCCAG : TCTGCTATCTTGGGAATGCATTCAATAGTCAGTCGTCCTATGGTCGTTGGAGGCAATATTGTTCCAAGACCAATGATGTACATTGCTCTGACATACGATCACAGGCTGATCGATGGAAGAGAGGCAGTCTTCTTCTTGAGAAGAATCAAGGATGTGGTTGAAGATCCCCGTCGCTTGCTCCTTGATGTTTGAAGATGAACCACATCATCTGGCTTTTGATTTTGATCCGTCCGTGGGTATACCTGAGTGTACAACTCAATCATAGAACCAGAATAAATGGCAATATCAGAGTTTTGTTGGCCTGAGGTGTTGCTTTGGTCCTCTGATTATTGCAGCCACAGCTATATTTGAGATTCGCAGATAGAACCCTAAAGAATTTACGGTCCTTCCCATTTACCCTTTTGCACAACTATATTTTACTTTGCATGAATATTTATTTCTCGTTTCAAAATATTAAAACCAACCTGAACTTTCTTTGAATTGGGACACACTTGCATTAGCCTATTGGCTATAGTATTTTCTTCTGTATTGGAGAATTCATACACGTTTGAATATTCATAATGTTGGTCCCAGTATTTTAATTTTGATTTAAATTGTTATCA</gDNA_template>
            <first_frame> K  Y  T  V  K  K  S  K  *  K  V  *  I  K  K  A  *  A  A  V  L  R  G  R  K  F  N  R  R  L  L  L  Q  P  Y  N  L  I  K  F  H  S  S  S  I  N  I  S :   F  K  R  S  R  A  A  M  L  G  V  L  R  R  K  A  I  S  S  A  S  F  T  S  :  C  V  R  K  S  L  H  T  V  R  P  A  V  C  K  S  R  I  P  S  A  A  A  E  E  :  I  S  L  L  T  R  Q  C  G  H  V  R  N  F  N  Q  L  V  L  P   : G  C  S  S  N  L  R  P  E  R :   A  V  T  N  L  F  S  S  P  T  L  S  N  W  S  R  P  F  C  A  N  S   : G  D  T  V  D  A  V  V  P  Y  M  G  E  S  I  S  D  G  T  L  A  K  F  L  K   : N  V  G  D  R  V  E  V  D  E  P  I  A  Q  I  E  T  D  K  :  V  T  I  D  V  T  S  P  E  A  G  V  I  Q  K  :  F  I  A  K  E  G  D  T  V  E  P  G  N  K  V  A  I  I  S  K  S  G  E  G  V  E  H  V  A  P  S  E  K  S  S  E  K  V  A  P  A  A  E  D  K  K  E  E  K  A  K  P  Q  V  E  T  T  P  V  K  E  K  P  K  G  S  S  P  P  P  P  K  R  S  P  T  E  L  Q  L  P  P  K  E  R  E  R  R  :  V  P  M  T  R  L  R  K  R  V  A  T  R  L  K  D  S  Q  N  T  F  A  L  L  T  T  F  N  E  V  D  M :   T  N  L  M  K  L  R  S  D  Y  K  D  A  F  F  E  K  H  G  V  K  L  G  F  M  S  G  F  V  K  :  A  A  V  S  A  L  Q  N  Q  P  I  V  N  A  V  I  D  G  D  D  I  I  Y  R  D  Y  I  D  I  S  I  A  V  G  T  P  K  :  G  L  V  V  P  V  I  R  N  A  E  Q  M  N  F  A  E  I  E  K  T  I  N  S  L  A  K  K  A  N  D  G  S  I  S  I  D  E  M  A  G  G  S  F  T  I  S  N  G  G  V  Y  G  S  L  I  S  T  P  I  I  N  P  P  Q  :  S  A  I  L  G  M  H  S  I  V  S  R  P  M  V  V  G  G  N  I  V  P  R  P  M  M  Y  I  A  L  T  Y  D  H  R  L  I  D  G  R  E  A  V  F  F  L  R  R  I  K  D  V  V  E  D  P  R  R  L  L  L  D  V  *  R  *  T  T  S  S  G  F  *  F  *  S  V  R  G  Y  T  *  V  Y  N  S  I  I  E  P  E  *  M  A  I  S  E  F  C  W  P  E  V  L  L  W  S  S  D  Y  C  S  H  S  Y  I  *  D  S  Q  I  E  P  *  R  I  Y  G  P  S  H  L  P  F  C  T  T  I  F  Y  F  A  *  I  F  I  S  R  F  K  I  L  K  P  T  *  T  F  F  E  L  G  H  T  C  I  S  L  L  A  I  V  F  S  S  V  L  E  N  S  Y  T  F  E  Y  S  *  C  W  S  Q  Y  F  N  F  D  L  N  C  Y   </first_frame>
            <second_frame>  N  I  Q  *  K  K  A  N  K  R  S  E  *  R  K  L  K  Q  L  F  F  V  G  E  N  S  I  G  A  F  F  S  N  P  T  I  S  S  N  F  T  L  L  P  L  I  S   : V  L  R  D  R  E  L  R  C  *  V  F  *  G  A  K  L  F  L  A  P  L  L  L  R :   V  *  G  N  L  C  I  R  F  D  L  Q  Y  V  N  L  E  F  H  L  L  L  Q  K  R :   Y  H  C  L  L  D  N  V  V  M  C  E  I  S  I  S  L  C  C  L  :  G  A  H  Q  I  C  A  Q  K   : G  L  *  P  I  F  S  Q  V  Q  H  Y  Q  I  G  A  G  L  S  A  Q  I  V  :  V  I  P  L  T  L  L  F  H  I  W  V  N  P  L  V  M  G  H  W  P  S  S  *  R  :  M  L  V  T  E  *  K  L  M  S  Q  L  L  R  L  K  Q  I  R :   *  P  L  M  L  P  V  L  K  L  V  *  S  K  S :   L  *  P  R  K  G  T  L  S  N  Q  A  I  K  L  L  S  F  Q  N  L  V  R  V  W  N  M  L  L  H  L  R  S  P  L  R  K  *  L  L  Q  L  R  I  R  K  R  K  R  Q  N  L  K  L  R  Q  L  P  S  R  R  S  L  R  E  V  H  L  H  P  L  N  A  L  L  Q  S  S  N  F  L  P  K  N  G  K  D  E :   F  P  *  P  G  S  E  K  E  L  P  H  V  *  K  I  L  R  T  H  L  L  C  *  Q  H  S  M  K  L  I   : *  Q  I  *  *  S  S  V  L  I  T  K  M  P  F  L  K  S  M  E  S  S  *  D  S  C  L  D  L  *  K :   Q  Q  L  A  H  S  R  I  S  Q  L  L  M  L  L  S  M  V  M  T  S  Y  I  G  I  I  *  T  S  V  S  L  L  V  H  Q  R :   V  L  L  F  Q  L  S  A  T  L  S  R  *  I  L  L  R  *  K  R  Q  L  T  H  L  L  R  R  Q  M  M  E  A  Y  L  L  M  K  W  L  E  G  H  S  P  F  Q  T  V  E  C  M  E  V  L  S  V  P  L  S  L  I  L  P  S :   L  L  S  W  E  C  I  Q  *  S  V  V  L  W  S  L  E  A  I  L  F  Q  D  Q  *  C  T  L  L  *  H  T  I  T  G  *  S  M  E  E  R  Q  S  S  S  *  E  E  S  R  M  W  L  K  I  P  V  A  C  S  L  M  F  E  D  E  P  H  H  L  A  F  D  F  D  P  S  V  G  I  P  E  C  T  T  Q  S  *  N  Q  N  K  W  Q  Y  Q  S  F  V  G  L  R  C  C  F  G  P  L  I  I  A  A  T  A  I  F  E  I  R  R  *  N  P  K  E  F  T  V  L  P  I  Y  P  F  A  Q  L  Y  F  T  L  H  E  Y  L  F  L  V  S  K  Y  *  N  Q  P  E  L  S  L  N  W  D  T  L  A  L  A  Y  W  L  *  Y  F  L  L  Y  W  R  I  H  T  R  L  N  I  H  N  V  G  P  S  I  L  I  L  I  *  I  V  I  </second_frame>
            <third_frame>   I  Y  S  K  K  K  Q  I  K  G  L  N  K  E  S  L  S  S  C  S  S  W  A  K  I  Q  S  A  P  S  S  P  T  L  Q  S  H  Q  I  S  L  F  F  H  *  Y  Q  :  F  *  E  I  E  S  C  D  V  R  C  F  K  A  Q  S  Y  F  *  R  L  F  Y  F   : V  C  K  E  I  S  A  Y  G  S  T  C  S  M  *  I  *  N  S  I  C  C  C  R  R   : D  I  I  A  Y  *  T  M  W  S  C  A  K  F  Q  S  A  C  A  A  W :   V  L  I  K  F  A  P  R  K  :  G  C  D  Q  S  F  L  K  S  N  T  I  K  L  E  Q  A  F  L  R  K  *  W :   *  Y  R  *  R  C  C  S  I  Y  G  *  I  H  *  *  W  D  T  G  Q  V  P  E  E :   C  W  *  Q  S  R  S  *  *  A  N  C  S  D  *  N  R  *   : G  N  H  *  C  Y  Q  S  *  S  W  C  N  P  K   : V  Y  S  Q  G  R  G  H  C  R  T  R  Q  *  S  C  Y  H  F  K  I  W  *  G  C  G  T  C  C  S  I  *  E  V  L  *  E  S  S  S  C  S  *  G  *  E  R  G  K  G  K  T  S  S  *  D  N  S  R  Q  G  E  A  *  G  K  F  T  S  T  P  *  T  L  S  Y  R  A  P  T  S  S  Q  R  T  G  K  T   : S  S  H  D  Q  A  Q  K  K  S  C  H  T  F  E  R  F  S  E  H  I  C  F  A  D  N  I  Q  *  S  *  Y  :  D  K  F  D  E  A  P  F  *  L  Q  R  C  L  F  *  K  A  W  S  Q  V  R  I  H  V  W  I  C  E   : S  S  S  *  R  T  P  E  S  A  N  C  *  C  C  Y  R  W  *  *  H  H  I  *  G  L  Y  R  H  Q  Y  R  C  W  Y  T  K   : G  S  C  C  S  S  Y  P  Q  R  *  A  D  E  F  C  *  D  R  K  D  N  *  L  T  C  *  E  G  K  *  W  K  H  I  Y  *  *  N  G  W  R  V  I  H  H  F  K  R  W  S  V  W  K  S  Y  Q  Y  P  Y  H  *  S  S  P   : V  C  Y  L  G  N  A  F  N  S  Q  S  S  Y  G  R  W  R  Q  Y  C  S  K  T  N  D  V  H  C  S  D  I  R  S  Q  A  D  R  W  K  R  G  S  L  L  L  E  K  N  Q  G  C  G  *  R  S  P  S  L  A  P  *  C  L  K  M  N  H  I  I  W  L  L  I  L  I  R  P  W  V  Y  L  S  V  Q  L  N  H  R  T  R  I  N  G  N  I  R  V  L  L  A  *  G  V  A  L  V  L  *  L  L  Q  P  Q  L  Y  L  R  F  A  D  R  T  L  K  N  L  R  S  F  P  F  T  L  L  H  N  Y  I  L  L  C  M  N  I  Y  F  S  F  Q  N  I  K  T  N  L  N  F  L  *  I  G  T  H  L  H  *  P  I  G  Y  S  I  F  F  C  I  G  E  F  I  H  V  *  I  F  I  M  L  V  P  V  F  *  F  *  F  K  L  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0047K21.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5497" stop="5588"/>
                    <exon start="5694" stop="5766"/>
                    <exon start="5866" stop="5940"/>
                    <exon start="6905" stop="6965"/>
                    <exon start="7044" stop="7071"/>
                    <exon start="8248" stop="8315"/>
                    <exon start="9300" stop="9374"/>
                    <exon start="9476" stop="9531"/>
                    <exon start="9628" stop="9672"/>
                    <exon start="9784" stop="10047"/>
                    <exon start="10154" stop="10248"/>
                    <exon start="10523" stop="10613"/>
                    <exon start="10693" stop="10803"/>
                    <exon start="11020" stop="11214"/>
                    <exon start="11298" stop="11489"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1518</number_coding_nucleotides>
                  <number_encoded_amino_acids>506</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAVLRGRKFNRRLLLQPYNLIKFHSSSINISFKRSRAAMLGVLRRKAISSASFTSCVRKSLHTVRPAVCKSRIPSAAAEEISLLTRQCGHVRNFNQLVLPGCSSNLRPERAVTNLFSSPTLSNWSRPFCANSGDTVDAVVPYMGESISDGTLAKFLKNVGDRVEVDEPIAQIETDKVTIDVTSPEAGVIQKFIAKEGDTVEPGNKVAIISKSGEGVEHVAPSEKSSEKVAPAAEDKKEEKAKPQVETTPVKEKPKGSSPPPPKRSPTELQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFFEKHGVKLGFMSGFVKAAVSALQNQPIVNAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNAEQMNFAEIEKTINSLAKKANDGSISIDEMAGGSFTISNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGGNIVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEDPRRLLLDV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="17971" PGL_stop="13604"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17971" e_stop="17953"/>
            <exon e_start="17218" e_stop="17156"/>
            <exon e_start="17073" e_stop="17011"/>
            <exon e_start="16922" e_stop="16840"/>
            <exon e_start="16684" e_stop="16576"/>
            <exon e_start="16466" e_stop="16413"/>
            <exon e_start="16142" e_stop="16055"/>
            <exon e_start="15885" e_stop="15848"/>
            <exon e_start="15695" e_stop="15590"/>
            <exon e_start="14839" e_stop="14673"/>
            <exon e_start="13981" e_stop="13604"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.760" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.805" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.974" e_score="0.991"/>
          <exon-intron don_prob="0.956" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.843" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.953" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17971" e_stop="17953" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="17952" i_stop="17219" i_length="734"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17218" e_stop="17156" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.760">
            <gDNA_intron_boundary i_start="17155" i_stop="17074" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17073" e_stop="17011" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.983">
            <gDNA_intron_boundary i_start="17010" i_stop="16923" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16922" e_stop="16840" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.934" acc_prob="0.805">
            <gDNA_intron_boundary i_start="16839" i_stop="16685" i_length="155"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="16684" e_stop="16576" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.974">
            <gDNA_intron_boundary i_start="16575" i_stop="16467" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16466" e_stop="16413" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.956" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16412" i_stop="16143" i_length="270"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16142" e_stop="16055" e_length="88"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="16054" i_stop="15886" i_length="169"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="15885" e_stop="15848" e_length="38"/>
          </exon>
          <intron i_serial="8" don_prob="0.843" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15847" i_stop="15696" i_length="152"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="15695" e_stop="15590" e_length="106"/>
          </exon>
          <intron i_serial="9" don_prob="0.916" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15589" i_stop="14840" i_length="750"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="14839" e_stop="14673" e_length="167"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.953">
            <gDNA_intron_boundary i_start="14672" i_stop="13982" i_length="691"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="13981" e_stop="13604" e_length="378"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17971" stop="17953"/>
              <exon start="17218" stop="17156"/>
              <exon start="17073" stop="17011"/>
              <exon start="16922" stop="16840"/>
              <exon start="16684" stop="16576"/>
              <exon start="16466" stop="16413"/>
              <exon start="16142" stop="16055"/>
              <exon start="15885" stop="15848"/>
              <exon start="15695" stop="15590"/>
              <exon start="14839" stop="14673"/>
              <exon start="13981" stop="13869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16108" stop="16055"/>
              <exon start="15885" stop="15848"/>
              <exon start="15695" stop="15590"/>
              <exon start="14839" stop="14673"/>
              <exon start="13981" stop="13604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15616" stop="15590"/>
              <exon start="14839" stop="14673"/>
              <exon start="13981" stop="13604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251028" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATACAGAAGAAAATGAG : GTGAGAAACCTTGGCAAGCCCGTGGATCTTGCTGGACAGTATTACAAGGATGGGGCAGATGAG : GTTAGCTTTTTAAATATTACTGCTTTCCGAGACTTTCCCTTGGGTGATCTGCCAATGTTGCAG : GTATTGAGGTATGCATCAGAGAATGTTTTTGTGCCATTAACCGTTGGAGGTGGTATTAGAGACTTCAAAGATGCGAATGGCAG : ATACTACTCTAGTTTGGAAGTTGCTTCAGAATATTTTCGTTCTGGGGCAGACAAAATTTCTATTGGAAGTGATGCTGTTTATGCTGCGGAAGAATACTTGAAATCTGGA : GTGAAAACTGGAAAGAGCAGTCTAGAGCAGATCTCCCGAGTTTATGGAAATCAG : GCAGTAGTTGTAAGCATTGATCCTCGAAGGGTGTATGTAAAGGACCCCAAGGCCGTGGAATTCAGGACTGTGAAAGTGCGAAACCCAG : GTCCAAATGGAGAAGAATATGCATGGTACCAGTGCACG : GTGAGTGGTGGGAGAGAAGGCCGCCCTATTGGAGCTTATGAGCTTGCGAAAGCTGTTGAGGAATTAGGAGCTGGGGAGATACTGCTGAACTGCATTGATTGTGATG : GTCAAGGAAAGGGATTTGATATAGACCTAATTAAGTTGGTTTCAGATGCTGTAAGCATTCCTGTGATTGCAAGCAGTGGAGCTGGAGCTGTTGAACACTTTACAGAGGTCTTCAGAGAAACAAATGCTTCTGCTGCCCTTGCTGCTGGAATTTTCCATAGAAAGGAG : GTTCCCATTCAAGCCGTGAAAGAGCACCTGTCAGAGGAAGGCATAGAGGTTAGAATGTAACCACATTTTTGCTATCGAGCAACTCGATATGCAGTCCTATCCTTTGCCATTCCTTGTTACTTGATGTTTATATCACTGAATATCAGTTTCTTTTATCTTGTTGCTGCGAACGAAGCCTTTTTCAATATCTTGCACTTATAGCCTCGTGCCAATTTTGAGCAAGTTATCATTGTAAAATTGTGTTGTTAAATTATTTGTGTACACTTTCTTCAGTATATGGGTTATTAGTTGGACATGTCTTGGGGTATTAGTTCTTGAGTATCATCGTGAATGATGAATATACATTTTGTTGAACAAAGTTCACAAATTTCTTTGCTG</gDNA_template>
            <first_frame> E  Y  R  R  K  *   : G  E  K  P  W  Q  A  R  G  S  C  W  T  V  L  Q  G  W  G  R  *   : G  *  L  F  K  Y  Y  C  F  P  R  L  S  L  G  *  S  A  N  V  A   : G  I  E  V  C  I  R  E  C  F  C  A  I  N  R  W  R  W  Y  *  R  L  Q  R  C  E  W  Q  :  I  L  L  *  F  G  S  C  F  R  I  F  S  F  W  G  R  Q  N  F  Y  W  K  *  C  C  L  C  C  G  R  I  L  E  I  W   : S  E  N  W  K  E  Q  S  R  A  D  L  P  S  L  W  K  S   : G  S  S  C  K  H  *  S  S  K  G  V  C  K  G  P  Q  G  R  G  I  Q  D  C  E  S  A  K  P  R :   S  K  W  R  R  I  C  M  V  P  V  H   : G  E  W  W  E  R  R  P  P  Y  W  S  L  *  A  C  E  S  C  *  G  I  R  S  W  G  D  T  A  E  L  H  *  L  *  W :   S  R  K  G  I  *  Y  R  P  N  *  V  G  F  R  C  C  K  H  S  C  D  C  K  Q  W  S  W  S  C  *  T  L  Y  R  G  L  Q  R  N  K  C  F  C  C  P  C  C  W  N  F  P  *  K  G   : G  S  H  S  S  R  E  R  A  P  V  R  G  R  H  R  G  *  N  V  T  T  F  L  L  S  S  N  S  I  C  S  P  I  L  C  H  S  L  L  L  D  V  Y  I  T  E  Y  Q  F  L  L  S  C  C  C  E  R  S  L  F  Q  Y  L  A  L  I  A  S  C  Q  F  *  A  S  Y  H  C  K  I  V  L  L  N  Y  L  C  T  L  S  S  V  Y  G  L  L  V  G  H  V  L  G  Y  *  F  L  S  I  I  V  N  D  E  Y  T  F  C  *  T  K  F  T  N  F  F  A  </first_frame>
            <second_frame>  N  T  E  E  N  E  :  V  R  N  L  G  K  P  V  D  L  A  G  Q  Y  Y  K  D  G  A  D  E  :  V  S  F  L  N  I  T  A  F  R  D  F  P  L  G  D  L  P  M  L  Q  :  V  L  R  Y  A  S  E  N  V  F  V  P  L  T  V  G  G  G  I  R  D  F  K  D  A  N  G  R :   Y  Y  S  S  L  E  V  A  S  E  Y  F  R  S  G  A  D  K  I  S  I  G  S  D  A  V  Y  A  A  E  E  Y  L  K  S  G  :  V  K  T  G  K  S  S  L  E  Q  I  S  R  V  Y  G  N  Q  :  A  V  V  V  S  I  D  P  R  R  V  Y  V  K  D  P  K  A  V  E  F  R  T  V  K  V  R  N  P   : G  P  N  G  E  E  Y  A  W  Y  Q  C  T  :  V  S  G  G  R  E  G  R  P  I  G  A  Y  E  L  A  K  A  V  E  E  L  G  A  G  E  I  L  L  N  C  I  D  C  D   : G  Q  G  K  G  F  D  I  D  L  I  K  L  V  S  D  A  V  S  I  P  V  I  A  S  S  G  A  G  A  V  E  H  F  T  E  V  F  R  E  T  N  A  S  A  A  L  A  A  G  I  F  H  R  K  E  :  V  P  I  Q  A  V  K  E  H  L  S  E  E  G  I  E  V  R  M  *  P  H  F  C  Y  R  A  T  R  Y  A  V  L  S  F  A  I  P  C  Y  L  M  F  I  S  L  N  I  S  F  F  Y  L  V  A  A  N  E  A  F  F  N  I  L  H  L  *  P  R  A  N  F  E  Q  V  I  I  V  K  L  C  C  *  I  I  C  V  H  F  L  Q  Y  M  G  Y  *  L  D  M  S  W  G  I  S  S  *  V  S  S  *  M  M  N  I  H  F  V  E  Q  S  S  Q  I  S  L  L </second_frame>
            <third_frame>   I  Q  K  K  M  R :   *  E  T  L  A  S  P  W  I  L  L  D  S  I  T  R  M  G  Q  M  R :   L  A  F  *  I  L  L  L  S  E  T  F  P  W  V  I  C  Q  C  C  R :   Y  *  G  M  H  Q  R  M  F  L  C  H  *  P  L  E  V  V  L  E  T  S  K  M  R  M  A   : D  T  T  L  V  W  K  L  L  Q  N  I  F  V  L  G  Q  T  K  F  L  L  E  V  M  L  F  M  L  R  K  N  T  *  N  L  E :   *  K  L  E  R  A  V  *  S  R  S  P  E  F  M  E  I  R :   Q  *  L  *  A  L  I  L  E  G  C  M  *  R  T  P  R  P  W  N  S  G  L  *  K  C  E  T  Q  :  V  Q  M  E  K  N  M  H  G  T  S  A  R :   *  V  V  G  E  K  A  A  L  L  E  L  M  S  L  R  K  L  L  R  N  *  E  L  G  R  Y  C  *  T  A  L  I  V  M  :  V  K  E  R  D  L  I  *  T  *  L  S  W  F  Q  M  L  *  A  F  L  *  L  Q  A  V  E  L  E  L  L  N  T  L  Q  R  S  S  E  K  Q  M  L  L  L  P  L  L  L  E  F  S  I  E  R  R :   F  P  F  K  P  *  K  S  T  C  Q  R  K  A  *  R  L  E  C  N  H  I  F  A  I  E  Q  L  D  M  Q  S  Y  P  L  P  F  L  V  T  *  C  L  Y  H  *  I  S  V  S  F  I  L  L  L  R  T  K  P  F  S  I  S  C  T  Y  S  L  V  P  I  L  S  K  L  S  L  *  N  C  V  V  K  L  F  V  Y  T  F  F  S  I  W  V  I  S  W  T  C  L  G  V  L  V  L  E  Y  H  R  E  *  *  I  Y  I  L  L  N  K  V  H  K  F  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0047K21.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17970" stop="17953"/>
                    <exon start="17218" stop="17156"/>
                    <exon start="17073" stop="17011"/>
                    <exon start="16922" stop="16840"/>
                    <exon start="16684" stop="16576"/>
                    <exon start="16466" stop="16413"/>
                    <exon start="16142" stop="16055"/>
                    <exon start="15885" stop="15848"/>
                    <exon start="15695" stop="15590"/>
                    <exon start="14839" stop="14673"/>
                    <exon start="13981" stop="13922"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTEENEVRNLGKPVDLAGQYYKDGADEVSFLNITAFRDFPLGDLPMLQVLRYASENVFVPLTVGGGIRDFKDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYLKSGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYVKDPKAVEFRTVKVRNPGPNGEEYAWYQCTVSGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDIDLIKLVSDAVSIPVIASSGAGAVEHFTEVFRETNASAALAAGIFHRKEVPIQAVKEHLSEEGIEVRM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16513" e_stop="16413"/>
            <exon e_start="16142" e_stop="16055"/>
            <exon e_start="15885" e_stop="15590"/>
            <exon e_start="14839" e_stop="14673"/>
            <exon e_start="13981" e_stop="13604"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.956" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.953" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16513" e_stop="16413" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.956" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16412" i_stop="16143" i_length="270"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16142" e_stop="16055" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="16054" i_stop="15886" i_length="169"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15885" e_stop="15590" e_length="296"/>
          </exon>
          <intron i_serial="3" don_prob="0.916" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15589" i_stop="14840" i_length="750"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14839" e_stop="14673" e_length="167"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.953">
            <gDNA_intron_boundary i_start="14672" i_stop="13982" i_length="691"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="13981" e_stop="13604" e_length="378"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16513" stop="16413"/>
              <exon start="16142" stop="16055"/>
              <exon start="15885" stop="15590"/>
              <exon start="14839" stop="14673"/>
              <exon start="13981" stop="13838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15616" stop="15590"/>
              <exon start="14839" stop="14673"/>
              <exon start="13981" stop="13604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251028" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATAATAACGTCAATCTGTTTATCGTTTCACTTACTGTCTTTGAAGGTGAAAACTGGAAAGAGCAGTCTAGAGCAGATCTCCCGAGTTTATGGAAATCAG : GCAGTAGTTGTAAGCATTGATCCTCGAAGGGTGTATGTAAAGGACCCCAAGGCCGTGGAATTCAGGACTGTGAAAGTGCGAAACCCAG : GTCCAAATGGAGAAGAATATGCATGGTACCAGTGCACGGTGGGCAATGAATCTTTTTTGTTATAAATTACAACCCGTTATTCTTGTAATCTCATTCTTTTATTGGTGTCACATGGAATATCAAGATTGTTTTTCACGGTTGATAGTTTTTATACATTCAACCTAAGTTCAATTTAATTCTATGTTTCAAGGTGAGTGGTGGGAGAGAAGGCCGCCCTATTGGAGCTTATGAGCTTGCGAAAGCTGTTGAGGAATTAGGAGCTGGGGAGATACTGCTGAACTGCATTGATTGTGATG : GTCAAGGAAAGGGATTTGATATAGACCTAATTAAGTTGGTTTCAGATGCTGTAAGCATTCCTGTGATTGCAAGCAGTGGAGCTGGAGCTGTTGAACACTTTACAGAGGTCTTCAGAGAAACAAATGCTTCTGCTGCCCTTGCTGCTGGAATTTTCCATAGAAAGGAG : GTTCCCATTCAAGCCGTGAAAGAGCACCTGTCAGAGGAAGGCATAGAGGTTAGAATGTAACCACATTTTTGCTATCGAGCAACTCGATATGCAGTCCTATCCTTTGCCATTCCTTGTTACTTGATGTTTATATCACTGAATATCAGTTTCTTTTATCTTGTTGCTGCGAACGAAGCCTTTTTCAATATCTTGCACTTATAGCCTCGTGCCAATTTTGAGCAAGTTATCATTGTAAAATTGTGTTGTTAAATTATTTGTGTACACTTTCTTCAGTATATGGGTTATTAGTTGGACATGTCTTGGGGTATTAGTTCTTGAGTATCATCGTGAATGATGAATATACATTTTGTTGAACAAAGTTCACAAATTTCTTTGCTG</gDNA_template>
            <first_frame> L  *  *  R  Q  S  V  Y  R  F  T  Y  C  L  *  R  *  K  L  E  R  A  V  *  S  R  S  P  E  F  M  E  I  R :   Q  *  L  *  A  L  I  L  E  G  C  M  *  R  T  P  R  P  W  N  S  G  L  *  K  C  E  T  Q  :  V  Q  M  E  K  N  M  H  G  T  S  A  R  W  A  M  N  L  F  C  Y  K  L  Q  P  V  I  L  V  I  S  F  F  Y  W  C  H  M  E  Y  Q  D  C  F  S  R  L  I  V  F  I  H  S  T  *  V  Q  F  N  S  M  F  Q  G  E  W  W  E  R  R  P  P  Y  W  S  L  *  A  C  E  S  C  *  G  I  R  S  W  G  D  T  A  E  L  H  *  L  *  W :   S  R  K  G  I  *  Y  R  P  N  *  V  G  F  R  C  C  K  H  S  C  D  C  K  Q  W  S  W  S  C  *  T  L  Y  R  G  L  Q  R  N  K  C  F  C  C  P  C  C  W  N  F  P  *  K  G   : G  S  H  S  S  R  E  R  A  P  V  R  G  R  H  R  G  *  N  V  T  T  F  L  L  S  S  N  S  I  C  S  P  I  L  C  H  S  L  L  L  D  V  Y  I  T  E  Y  Q  F  L  L  S  C  C  C  E  R  S  L  F  Q  Y  L  A  L  I  A  S  C  Q  F  *  A  S  Y  H  C  K  I  V  L  L  N  Y  L  C  T  L  S  S  V  Y  G  L  L  V  G  H  V  L  G  Y  *  F  L  S  I  I  V  N  D  E  Y  T  F  C  *  T  K  F  T  N  F  F  A  </first_frame>
            <second_frame>  Y  N  N  V  N  L  F  I  V  S  L  T  V  F  E  G  E  N  W  K  E  Q  S  R  A  D  L  P  S  L  W  K  S   : G  S  S  C  K  H  *  S  S  K  G  V  C  K  G  P  Q  G  R  G  I  Q  D  C  E  S  A  K  P  R :   S  K  W  R  R  I  C  M  V  P  V  H  G  G  Q  *  I  F  F  V  I  N  Y  N  P  L  F  L  *  S  H  S  F  I  G  V  T  W  N  I  K  I  V  F  H  G  *  *  F  L  Y  I  Q  P  K  F  N  L  I  L  C  F  K  V  S  G  G  R  E  G  R  P  I  G  A  Y  E  L  A  K  A  V  E  E  L  G  A  G  E  I  L  L  N  C  I  D  C  D   : G  Q  G  K  G  F  D  I  D  L  I  K  L  V  S  D  A  V  S  I  P  V  I  A  S  S  G  A  G  A  V  E  H  F  T  E  V  F  R  E  T  N  A  S  A  A  L  A  A  G  I  F  H  R  K  E  :  V  P  I  Q  A  V  K  E  H  L  S  E  E  G  I  E  V  R  M  *  P  H  F  C  Y  R  A  T  R  Y  A  V  L  S  F  A  I  P  C  Y  L  M  F  I  S  L  N  I  S  F  F  Y  L  V  A  A  N  E  A  F  F  N  I  L  H  L  *  P  R  A  N  F  E  Q  V  I  I  V  K  L  C  C  *  I  I  C  V  H  F  L  Q  Y  M  G  Y  *  L  D  M  S  W  G  I  S  S  *  V  S  S  *  M  M  N  I  H  F  V  E  Q  S  S  Q  I  S  L  L </second_frame>
            <third_frame>   I  I  T  S  I  C  L  S  F  H  L  L  S  L  K  V  K  T  G  K  S  S  L  E  Q  I  S  R  V  Y  G  N  Q  :  A  V  V  V  S  I  D  P  R  R  V  Y  V  K  D  P  K  A  V  E  F  R  T  V  K  V  R  N  P   : G  P  N  G  E  E  Y  A  W  Y  Q  C  T  V  G  N  E  S  F  L  L  *  I  T  T  R  Y  S  C  N  L  I  L  L  L  V  S  H  G  I  S  R  L  F  F  T  V  D  S  F  Y  T  F  N  L  S  S  I  *  F  Y  V  S  R  *  V  V  G  E  K  A  A  L  L  E  L  M  S  L  R  K  L  L  R  N  *  E  L  G  R  Y  C  *  T  A  L  I  V  M  :  V  K  E  R  D  L  I  *  T  *  L  S  W  F  Q  M  L  *  A  F  L  *  L  Q  A  V  E  L  E  L  L  N  T  L  Q  R  S  S  E  K  Q  M  L  L  L  P  L  L  L  E  F  S  I  E  R  R :   F  P  F  K  P  *  K  S  T  C  Q  R  K  A  *  R  L  E  C  N  H  I  F  A  I  E  Q  L  D  M  Q  S  Y  P  L  P  F  L  V  T  *  C  L  Y  H  *  I  S  V  S  F  I  L  L  L  R  T  K  P  F  S  I  S  C  T  Y  S  L  V  P  I  L  S  K  L  S  L  *  N  C  V  V  K  L  F  V  Y  T  F  F  S  I  W  V  I  S  W  T  C  L  G  V  L  V  L  E  Y  H  R  E  *  *  I  Y  I  L  L  N  K  V  H  K  F  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0047K21.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15740" stop="15590"/>
                    <exon start="14839" stop="14673"/>
                    <exon start="13981" stop="13922"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLYIQPKFNLILCFKVSGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDIDLIKLVSDAVSIPVIASSGAGAVEHFTEVFRETNASAALAAGIFHRKEVPIQAVKEHLSEEGIEVRM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0047K21.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16511" stop="16413"/>
                    <exon start="16142" stop="16055"/>
                    <exon start="15885" stop="15821"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IITSICLSFHLLSLKVKTGKSSLEQISRVYGNQAVVVSIDPRRVYVKDPKAVEFRTVKVRNPGPNGEEYAWYQCTVGNESFLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="21397" PGL_stop="18847"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21397" e_stop="21217"/>
            <exon e_start="21087" e_stop="21005"/>
            <exon e_start="20374" e_stop="20280"/>
            <exon e_start="19840" e_stop="19737"/>
            <exon e_start="19226" e_stop="19057"/>
            <exon e_start="18937" e_stop="18871"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.997" e_score="0.983"/>
          <exon-intron don_prob="0.995" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.826" acc_prob="0.652" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.875" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="21397" e_stop="21217" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.997">
            <gDNA_intron_boundary i_start="21216" i_stop="21088" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21087" e_stop="21005" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.989">
            <gDNA_intron_boundary i_start="21004" i_stop="20375" i_length="630"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20374" e_stop="20280" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20279" i_stop="19841" i_length="439"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19840" e_stop="19737" e_length="104"/>
          </exon>
          <intron i_serial="4" don_prob="0.826" acc_prob="0.652">
            <gDNA_intron_boundary i_start="19736" i_stop="19227" i_length="510"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19226" e_stop="19057" e_length="170"/>
          </exon>
          <intron i_serial="5" don_prob="0.945" acc_prob="0.875">
            <gDNA_intron_boundary i_start="19056" i_stop="18938" i_length="119"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18937" e_stop="18871" e_length="67"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21397" stop="21217"/>
              <exon start="21087" stop="21005"/>
              <exon start="20374" stop="20280"/>
              <exon start="19840" stop="19737"/>
              <exon start="19226" stop="19057"/>
              <exon start="18937" stop="18871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21396" stop="21217"/>
              <exon start="21087" stop="21005"/>
              <exon start="20374" stop="20280"/>
              <exon start="19840" stop="19737"/>
              <exon start="19226" stop="19090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21272" stop="21217"/>
              <exon start="21087" stop="21005"/>
              <exon start="20374" stop="20280"/>
              <exon start="19840" stop="19737"/>
              <exon start="19226" stop="19057"/>
              <exon start="18937" stop="18897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313188" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAAAATGGAGGCGGCCAGTTTCACTTCTGCTTCATCAACGACGACACCGTTTTCATCTTATTCCTCCACTTCTCAATCTCTTCGTTTCCTGCGTTACAAGCCTAATGCGAAACCTCTGAACTACAAATCTTCCAGAAGCTTCTCAGCCCGCGCTTCCGCCACCAGTGCCGATGATTCTG : TGGTAACTCTACTTGATTATGGTGCTGGCAATGTGCGGAGTGTCAGGAATGCAATTAAATATCTCGGTTTCGACATCAAAGAT : GTCCAAACACCACAGGACATTTTGAAAGCAAAACGACTCATTTTTCCTGGGGTTGGTGCTTTTGCTCCTGCCATGGATGTGCTAAACAAGAAGGG : AATGGCTGAAGCACTTTGTGCTTACATTGAGCAAGATCGCCCATTCCTAGGCATTTGTCTTGGACTGCAGCTACTTTTTGAGTCAAGTGAAGAAAATGGACAAG : TAAAGGGTCTTGGTTTGATTCCTGGAGTAGTTGGACGTTTTGACTCTTCTAAAGGGATCAGAGTACCTCACATTGGCTGGAATGCACTTGAAATAGCAAAAGATACTCAAATTTTGGATGACGTTGGAAATTCACATGTCTATTTCGTACATTCTTATCGGGCAATGCCG : TCAGATGAAAATAGAGAGTGGATATCATCGACCTGCAAGTATGGTGACGATTTCATAGCATCCATTC</gDNA_template>
            <first_frame> E  K  M  E  A  A  S  F  T  S  A  S  S  T  T  T  P  F  S  S  Y  S  S  T  S  Q  S  L  R  F  L  R  Y  K  P  N  A  K  P  L  N  Y  K  S  S  R  S  F  S  A  R  A  S  A  T  S  A  D  D  S   : V  V  T  L  L  D  Y  G  A  G  N  V  R  S  V  R  N  A  I  K  Y  L  G  F  D  I  K  D  :  V  Q  T  P  Q  D  I  L  K  A  K  R  L  I  F  P  G  V  G  A  F  A  P  A  M  D  V  L  N  K  K  G :   M  A  E  A  L  C  A  Y  I  E  Q  D  R  P  F  L  G  I  C  L  G  L  Q  L  L  F  E  S  S  E  E  N  G  Q   : V  K  G  L  G  L  I  P  G  V  V  G  R  F  D  S  S  K  G  I  R  V  P  H  I  G  W  N  A  L  E  I  A  K  D  T  Q  I  L  D  D  V  G  N  S  H  V  Y  F  V  H  S  Y  R  A  M  P  :  S  D  E  N  R  E  W  I  S  S  T  C  K  Y  G  D  D  F  I  A  S  I  </first_frame>
            <second_frame>  R  K  W  R  R  P  V  S  L  L  L  H  Q  R  R  H  R  F  H  L  I  P  P  L  L  N  L  F  V  S  C  V  T  S  L  M  R  N  L  *  T  T  N  L  P  E  A  S  Q  P  A  L  P  P  P  V  P  M  I  L  :  W  *  L  Y  L  I  M  V  L  A  M  C  G  V  S  G  M  Q  L  N  I  S  V  S  T  S  K  M :   S  K  H  H  R  T  F  *  K  Q  N  D  S  F  F  L  G  L  V  L  L  L  L  P  W  M  C  *  T  R  R   : E  W  L  K  H  F  V  L  T  L  S  K  I  A  H  S  *  A  F  V  L  D  C  S  Y  F  L  S  Q  V  K  K  M  D  K  :  *  R  V  L  V  *  F  L  E  *  L  D  V  L  T  L  L  K  G  S  E  Y  L  T  L  A  G  M  H  L  K  *  Q  K  I  L  K  F  W  M  T  L  E  I  H  M  S  I  S  Y  I  L  I  G  Q  C  R :   Q  M  K  I  E  S  G  Y  H  R  P  A  S  M  V  T  I  S  *  H  P  F </second_frame>
            <third_frame>   E  N  G  G  G  Q  F  H  F  C  F  I  N  D  D  T  V  F  I  L  F  L  H  F  S  I  S  S  F  P  A  L  Q  A  *  C  E  T  S  E  L  Q  I  F  Q  K  L  L  S  P  R  F  R  H  Q  C  R  *  F  C :   G  N  S  T  *  L  W  C  W  Q  C  A  E  C  Q  E  C  N  *  I  S  R  F  R  H  Q  R   : C  P  N  T  T  G  H  F  E  S  K  T  T  H  F  S  W  G  W  C  F  C  S  C  H  G  C  A  K  Q  E  G  :  N  G  *  S  T  L  C  L  H  *  A  R  S  P  I  P  R  H  L  S  W  T  A  A  T  F  *  V  K  *  R  K  W  T  S :   K  G  S  W  F  D  S  W  S  S  W  T  F  *  L  F  *  R  D  Q  S  T  S  H  W  L  E  C  T  *  N  S  K  R  Y  S  N  F  G  *  R  W  K  F  T  C  L  F  R  T  F  L  S  G  N  A   : V  R  *  K  *  R  V  D  I  I  D  L  Q  V  W  *  R  F  H  S  I  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0047K21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21397" stop="21217"/>
                    <exon start="21087" stop="21005"/>
                    <exon start="20374" stop="20280"/>
                    <exon start="19840" stop="19737"/>
                    <exon start="19226" stop="19057"/>
                    <exon start="18937" stop="18872"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMEAASFTSASSTTTPFSSYSSTSQSLRFLRYKPNAKPLNYKSSRSFSARASATSADDSVVTLLDYGAGNVRSVRNAIKYLGFDIKDVQTPQDILKAKRLIFPGVGAFAPAMDVLNKKGMAEALCAYIEQDRPFLGICLGLQLLFESSEENGQVKGLGLIPGVVGRFDSSKGIRVPHIGWNALEIAKDTQILDDVGNSHVYFVHSYRAMPSDENREWISSTCKYGDDFIASI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="21396" e_stop="21217"/>
            <exon e_start="21087" e_stop="21005"/>
            <exon e_start="20374" e_stop="20280"/>
            <exon e_start="19840" e_stop="19737"/>
            <exon e_start="19226" e_stop="19057"/>
            <exon e_start="18933" e_stop="18847"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.997" e_score="0.972"/>
          <exon-intron don_prob="0.995" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.826" acc_prob="0.652" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.570" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="21396" e_stop="21217" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.997">
            <gDNA_intron_boundary i_start="21216" i_stop="21088" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21087" e_stop="21005" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.989">
            <gDNA_intron_boundary i_start="21004" i_stop="20375" i_length="630"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20374" e_stop="20280" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20279" i_stop="19841" i_length="439"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19840" e_stop="19737" e_length="104"/>
          </exon>
          <intron i_serial="4" don_prob="0.826" acc_prob="0.652">
            <gDNA_intron_boundary i_start="19736" i_stop="19227" i_length="510"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19226" e_stop="19057" e_length="170"/>
          </exon>
          <intron i_serial="5" don_prob="0.945" acc_prob="0.570">
            <gDNA_intron_boundary i_start="19056" i_stop="18934" i_length="123"/>
          </intron>
          <exon e_serial="6" e_score="0.977">
            <gDNA_exon_boundary e_start="18933" e_stop="18847" e_length="87"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21396" stop="21217"/>
              <exon start="21087" stop="21005"/>
              <exon start="20374" stop="20280"/>
              <exon start="19840" stop="19737"/>
              <exon start="19226" stop="19090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21389" stop="21217"/>
              <exon start="21087" stop="21005"/>
              <exon start="20374" stop="20280"/>
              <exon start="19840" stop="19737"/>
              <exon start="19226" stop="19057"/>
              <exon start="18933" stop="18847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710295" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAATGGAGGCGGCCAGTTTCACTTCTGCTTCATCAACGACGACACCGTTTTCATCTTATTCCTCCACTTCTCAATCTCTTCGTTTCCTGCGTTACAAGCCTAATGCGAAACCTCTGAACTACAAATCTTCCAGAAGCTTCTCAGCCCGCGCTTCCGCCACCAGTGCCGATGATTCTG : TGGTAACTCTACTTGATTATGGTGCTGGCAATGTGCGGAGTGTCAGGAATGCAATTAAATATCTCGGTTTCGACATCAAAGAT : GTCCAAACACCACAGGACATTTTGAAAGCAAAACGACTCATTTTTCCTGGGGTTGGTGCTTTTGCTCCTGCCATGGATGTGCTAAACAAGAAGGG : AATGGCTGAAGCACTTTGTGCTTACATTGAGCAAGATCGCCCATTCCTAGGCATTTGTCTTGGACTGCAGCTACTTTTTGAGTCAAGTGAAGAAAATGGACAAG : TAAAGGGTCTTGGTTTGATTCCTGGAGTAGTTGGACGTTTTGACTCTTCTAAAGGGATCAGAGTACCTCACATTGGCTGGAATGCACTTGAAATAGCAAAAGATACTCAAATTTTGGATGACGTTGGAAATTCACATGTCTATTTCGTACATTCTTATCGGGCAATGCCG : ATGAAAATAGAGAGTGGATATCATCGACCTGCAAGTATGGTGACGATTTCATAGCATCCATTCAGAGAGGAAATGTCCATGCCGTTC</gDNA_template>
            <first_frame> R  K  W  R  R  P  V  S  L  L  L  H  Q  R  R  H  R  F  H  L  I  P  P  L  L  N  L  F  V  S  C  V  T  S  L  M  R  N  L  *  T  T  N  L  P  E  A  S  Q  P  A  L  P  P  P  V  P  M  I  L  :  W  *  L  Y  L  I  M  V  L  A  M  C  G  V  S  G  M  Q  L  N  I  S  V  S  T  S  K  M :   S  K  H  H  R  T  F  *  K  Q  N  D  S  F  F  L  G  L  V  L  L  L  L  P  W  M  C  *  T  R  R   : E  W  L  K  H  F  V  L  T  L  S  K  I  A  H  S  *  A  F  V  L  D  C  S  Y  F  L  S  Q  V  K  K  M  D  K  :  *  R  V  L  V  *  F  L  E  *  L  D  V  L  T  L  L  K  G  S  E  Y  L  T  L  A  G  M  H  L  K  *  Q  K  I  L  K  F  W  M  T  L  E  I  H  M  S  I  S  Y  I  L  I  G  Q  C  R :   *  K  *  R  V  D  I  I  D  L  Q  V  W  *  R  F  H  S  I  H  S  E  R  K  C  P  C  R   </first_frame>
            <second_frame>  E  N  G  G  G  Q  F  H  F  C  F  I  N  D  D  T  V  F  I  L  F  L  H  F  S  I  S  S  F  P  A  L  Q  A  *  C  E  T  S  E  L  Q  I  F  Q  K  L  L  S  P  R  F  R  H  Q  C  R  *  F  C :   G  N  S  T  *  L  W  C  W  Q  C  A  E  C  Q  E  C  N  *  I  S  R  F  R  H  Q  R   : C  P  N  T  T  G  H  F  E  S  K  T  T  H  F  S  W  G  W  C  F  C  S  C  H  G  C  A  K  Q  E  G  :  N  G  *  S  T  L  C  L  H  *  A  R  S  P  I  P  R  H  L  S  W  T  A  A  T  F  *  V  K  *  R  K  W  T  S :   K  G  S  W  F  D  S  W  S  S  W  T  F  *  L  F  *  R  D  Q  S  T  S  H  W  L  E  C  T  *  N  S  K  R  Y  S  N  F  G  *  R  W  K  F  T  C  L  F  R  T  F  L  S  G  N  A   : D  E  N  R  E  W  I  S  S  T  C  K  Y  G  D  D  F  I  A  S  I  Q  R  G  N  V  H  A  V  </second_frame>
            <third_frame>   K  M  E  A  A  S  F  T  S  A  S  S  T  T  T  P  F  S  S  Y  S  S  T  S  Q  S  L  R  F  L  R  Y  K  P  N  A  K  P  L  N  Y  K  S  S  R  S  F  S  A  R  A  S  A  T  S  A  D  D  S   : V  V  T  L  L  D  Y  G  A  G  N  V  R  S  V  R  N  A  I  K  Y  L  G  F  D  I  K  D  :  V  Q  T  P  Q  D  I  L  K  A  K  R  L  I  F  P  G  V  G  A  F  A  P  A  M  D  V  L  N  K  K  G :   M  A  E  A  L  C  A  Y  I  E  Q  D  R  P  F  L  G  I  C  L  G  L  Q  L  L  F  E  S  S  E  E  N  G  Q   : V  K  G  L  G  L  I  P  G  V  V  G  R  F  D  S  S  K  G  I  R  V  P  H  I  G  W  N  A  L  E  I  A  K  D  T  Q  I  L  D  D  V  G  N  S  H  V  Y  F  V  H  S  Y  R  A  M  P  :  M  K  I  E  S  G  Y  H  R  P  A  S  M  V  T  I  S  *  H  P  F  R  E  E  M  S  M  P  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0047K21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21394" stop="21217"/>
                    <exon start="21087" stop="21005"/>
                    <exon start="20374" stop="20280"/>
                    <exon start="19840" stop="19737"/>
                    <exon start="19226" stop="19057"/>
                    <exon start="18933" stop="18880"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMEAASFTSASSTTTPFSSYSSTSQSLRFLRYKPNAKPLNYKSSRSFSARASATSADDSVVTLLDYGAGNVRSVRNAIKYLGFDIKDVQTPQDILKAKRLIFPGVGAFAPAMDVLNKKGMAEALCAYIEQDRPFLGICLGLQLLFESSEENGQVKGLGLIPGVVGRFDSSKGIRVPHIGWNALEIAKDTQILDDVGNSHVYFVHSYRAMPMKIESGYHRPASMVTIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="26522" PGL_stop="26055"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26522" e_stop="26055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="26522" e_stop="26055" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26522" stop="26055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366467" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATTAAGAGACAAGGAGGTTCGTTGAATGAATGTATGATCAAATTATACGCTCAACAAATCTTACAGGGATTGGATTATCTTCACTCCATTGGGATTGTGCATTGTGATGTGAAAGGGCAGAACATTTTGATTTGTGAAAATGGGAATGTTAAAATTGCTGATTTGGGATGTGCGAAATTGATGAAAGATGGAAAAAATTCTGGATTTTCCGGTACACCGGCTTTTATGGCACCTGAAGTTGCTCGAAGCGAAGAACAAGGATTTGCGGCTGATATTTGGGCTTTTGGTTGTACAATTATTGAGATGGCTACAGGATTAGTTCCTTGGTGTGAGATCAATGATCCTGTTTCTGCTCTGTATAGAATTGGTTATTCAGGGGATATGCCACAATTCCCAAACAATATGTCAAAGGATGCCACAGAATTTCTCGGTAAATGCTTGATGAAATGCCCGAACCAGCGTTG</gDNA_template>
            <first_frame> F  D  *  E  T  R  R  F  V  E  *  M  Y  D  Q  I  I  R  S  T  N  L  T  G  I  G  L  S  S  L  H  W  D  C  A  L  *  C  E  R  A  E  H  F  D  L  *  K  W  E  C  *  N  C  *  F  G  M  C  E  I  D  E  R  W  K  K  F  W  I  F  R  Y  T  G  F  Y  G  T  *  S  C  S  K  R  R  T  R  I  C  G  *  Y  L  G  F  W  L  Y  N  Y  *  D  G  Y  R  I  S  S  L  V  *  D  Q  *  S  C  F  C  S  V  *  N  W  L  F  R  G  Y  A  T  I  P  K  Q  Y  V  K  G  C  H  R  I  S  R  *  M  L  D  E  M  P  E  P  A  L </first_frame>
            <second_frame>  L  I  K  R  Q  G  G  S  L  N  E  C  M  I  K  L  Y  A  Q  Q  I  L  Q  G  L  D  Y  L  H  S  I  G  I  V  H  C  D  V  K  G  Q  N  I  L  I  C  E  N  G  N  V  K  I  A  D  L  G  C  A  K  L  M  K  D  G  K  N  S  G  F  S  G  T  P  A  F  M  A  P  E  V  A  R  S  E  E  Q  G  F  A  A  D  I  W  A  F  G  C  T  I  I  E  M  A  T  G  L  V  P  W  C  E  I  N  D  P  V  S  A  L  Y  R  I  G  Y  S  G  D  M  P  Q  F  P  N  N  M  S  K  D  A  T  E  F  L  G  K  C  L  M  K  C  P  N  Q  R   </second_frame>
            <third_frame>   *  L  R  D  K  E  V  R  *  M  N  V  *  S  N  Y  T  L  N  K  S  Y  R  D  W  I  I  F  T  P  L  G  L  C  I  V  M  *  K  G  R  T  F  *  F  V  K  M  G  M  L  K  L  L  I  W  D  V  R  N  *  *  K  M  E  K  I  L  D  F  P  V  H  R  L  L  W  H  L  K  L  L  E  A  K  N  K  D  L  R  L  I  F  G  L  L  V  V  Q  L  L  R  W  L  Q  D  *  F  L  G  V  R  S  M  I  L  F  L  L  C  I  E  L  V  I  Q  G  I  C  H  N  S  Q  T  I  C  Q  R  M  P  Q  N  F  S  V  N  A  *  *  N  A  R  T  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0047K21.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26521" stop="26057"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIKRQGGSLNECMIKLYAQQILQGLDYLHSIGIVHCDVKGQNILICENGNVKIADLGCAKLMKDGKNSGFSGTPAFMAPEVARSEEQGFAADIWAFGCTIIEMATGLVPWCEINDPVSALYRIGYSGDMPQFPNNMSKDATEFLGKCLMKCPNQR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="34909" PGL_stop="37139"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34909" e_stop="35279"/>
            <exon e_start="36049" e_stop="36120"/>
            <exon e_start="36272" e_stop="36336"/>
            <exon e_start="36896" e_stop="37139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.244" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34909" e_stop="35279" e_length="371"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="35280" i_stop="36048" i_length="769"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36049" e_stop="36120" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.244" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36121" i_stop="36271" i_length="151"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36272" e_stop="36336" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="36337" i_stop="36895" i_length="559"/>
          </intron>
          <exon e_serial="4" e_score="0.967">
            <gDNA_exon_boundary e_start="36896" e_stop="37139" e_length="244"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34909" stop="35279"/>
              <exon start="36049" stop="36120"/>
              <exon start="36272" stop="36336"/>
              <exon start="36896" stop="37139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345668" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGGCGAAAAAAAAAGAAAAAAGCACCAGTTCATCTTCTTCACTCCTTAGTTCAATAGAGAGAAATTAGCATCAACAATGCTCTCTCTGTCGGATTCACTTCGAATTTCTTCACCTTTAAGCGATTCTCGTCTGAGCTTTCTATCGCAAACTGGAAGCAGAACCAGTTGCCAGTTTAAATTTGTTCGCAGCCGGCGGGCTCGAGTTTCGAGGTGTAGATGCTCGGCAACCGAGGGACCGACGCCGAAACGGCGGAAGCAAATACCGGAGAAGTACAAGCAGTCGGAGGAGGAGAAAGGAATCGATCCTGTTGGATTTCTCAGCAAATACGGCATTACTCACAAAGCTTTCGCTCAATTTCTTCGTGAAAG : ATATAAATCATTGAAGGACTTGAAGGATGAAATATTGACTCGTCATTTCAGTCTCAAGGAGATGTCTACTGG : GTATGAATTAATGGGTATGCATCGCAACGTGCAACATCGAGTGGATTTCTTGGAATGGGCTCCAG : GTGCTCGCTACTGTGCTCTGATTGGTGACTTCAATGGGTGGTCAACAACTCGTAACTGTGCCAGAGAGGGTCATTTTGGTCATGACGATTATGGGTATTGGTTTATTATTCTTGAAGATAAATTACGTGAAGGAGAAGAACCGGATAAATTGTATTTTCAACAGTACAATTATGCGGATGACTATGATAAAGGTGACACGGGTATTACCATCGAGGAAATCTTTAAAAAAGCAAATGATGAGTA</gDNA_template>
            <first_frame> *  G  E  K  K  R  K  K  H  Q  F  I  F  F  T  P  *  F  N  R  E  K  L  A  S  T  M  L  S  L  S  D  S  L  R  I  S  S  P  L  S  D  S  R  L  S  F  L  S  Q  T  G  S  R  T  S  C  Q  F  K  F  V  R  S  R  R  A  R  V  S  R  C  R  C  S  A  T  E  G  P  T  P  K  R  R  K  Q  I  P  E  K  Y  K  Q  S  E  E  E  K  G  I  D  P  V  G  F  L  S  K  Y  G  I  T  H  K  A  F  A  Q  F  L  R  E  R :   Y  K  S  L  K  D  L  K  D  E  I  L  T  R  H  F  S  L  K  E  M  S  T  G :   Y  E  L  M  G  M  H  R  N  V  Q  H  R  V  D  F  L  E  W  A  P   : G  A  R  Y  C  A  L  I  G  D  F  N  G  W  S  T  T  R  N  C  A  R  E  G  H  F  G  H  D  D  Y  G  Y  W  F  I  I  L  E  D  K  L  R  E  G  E  E  P  D  K  L  Y  F  Q  Q  Y  N  Y  A  D  D  Y  D  K  G  D  T  G  I  T  I  E  E  I  F  K  K  A  N  D  E   </first_frame>
            <second_frame>  K  A  K  K  K  E  K  S  T  S  S  S  S  S  L  L  S  S  I  E  R  N  *  H  Q  Q  C  S  L  C  R  I  H  F  E  F  L  H  L  *  A  I  L  V  *  A  F  Y  R  K  L  E  A  E  P  V  A  S  L  N  L  F  A  A  G  G  L  E  F  R  G  V  D  A  R  Q  P  R  D  R  R  R  N  G  G  S  K  Y  R  R  S  T  S  S  R  R  R  R  K  E  S  I  L  L  D  F  S  A  N  T  A  L  L  T  K  L  S  L  N  F  F  V  K   : D  I  N  H  *  R  T  *  R  M  K  Y  *  L  V  I  S  V  S  R  R  C  L  L   : G  M  N  *  W  V  C  I  A  T  C  N  I  E  W  I  S  W  N  G  L  Q  :  V  L  A  T  V  L  *  L  V  T  S  M  G  G  Q  Q  L  V  T  V  P  E  R  V  I  L  V  M  T  I  M  G  I  G  L  L  F  L  K  I  N  Y  V  K  E  K  N  R  I  N  C  I  F  N  S  T  I  M  R  M  T  M  I  K  V  T  R  V  L  P  S  R  K  S  L  K  K  Q  M  M  S  </second_frame>
            <third_frame>   R  R  K  K  K  K  K  A  P  V  H  L  L  H  S  L  V  Q  *  R  E  I  S  I  N  N  A  L  S  V  G  F  T  S  N  F  F  T  F  K  R  F  S  S  E  L  S  I  A  N  W  K  Q  N  Q  L  P  V  *  I  C  S  Q  P  A  G  S  S  F  E  V  *  M  L  G  N  R  G  T  D  A  E  T  A  E  A  N  T  G  E  V  Q  A  V  G  G  G  E  R  N  R  S  C  W  I  S  Q  Q  I  R  H  Y  S  Q  S  F  R  S  I  S  S  *  K  :  I  *  I  I  E  G  L  E  G  *  N  I  D  S  S  F  Q  S  Q  G  D  V  Y  W  :  V  *  I  N  G  Y  A  S  Q  R  A  T  S  S  G  F  L  G  M  G  S  R :   C  S  L  L  C  S  D  W  *  L  Q  W  V  V  N  N  S  *  L  C  Q  R  G  S  F  W  S  *  R  L  W  V  L  V  Y  Y  S  *  R  *  I  T  *  R  R  R  T  G  *  I  V  F  S  T  V  Q  L  C  G  *  L  *  *  R  *  H  G  Y  Y  H  R  G  N  L  *  K  S  K  *  *  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0047K21.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34960" stop="35279"/>
                    <exon start="36049" stop="36120"/>
                    <exon start="36272" stop="36336"/>
                    <exon start="36896" stop="37137"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNREKLASTMLSLSDSLRISSPLSDSRLSFLSQTGSRTSCQFKFVRSRRARVSRCRCSATEGPTPKRRKQIPEKYKQSEEEKGIDPVGFLSKYGITHKAFAQFLRERYKSLKDLKDEILTRHFSLKEMSTGYELMGMHRNVQHRVDFLEWAPGARYCALIGDFNGWSTTRNCAREGHFGHDDYGYWFIILEDKLREGEEPDKLYFQQYNYADDYDKGDTGITIEEIFKKANDE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="42286" PGL_stop="45905"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42286" e_stop="42586"/>
            <exon e_start="44508" e_stop="44609"/>
            <exon e_start="44921" e_stop="45023"/>
            <exon e_start="45781" e_stop="45905"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.997" e_score="0.990"/>
          <exon-intron don_prob="0.943" acc_prob="0.994" e_score="0.971"/>
          <exon-intron don_prob="0.995" acc_prob="0.881" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="42286" e_stop="42586" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.997">
            <gDNA_intron_boundary i_start="42587" i_stop="44507" i_length="1921"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="44508" e_stop="44609" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.943" acc_prob="0.994">
            <gDNA_intron_boundary i_start="44610" i_stop="44920" i_length="311"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44921" e_stop="45023" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.881">
            <gDNA_intron_boundary i_start="45024" i_stop="45780" i_length="757"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="45781" e_stop="45905" e_length="125"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42286" stop="42586"/>
              <exon start="44508" stop="44609"/>
              <exon start="44921" stop="45023"/>
              <exon start="45781" stop="45905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345579" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGTCAGACACCATTTTCACTGTTATTGTACTAGTAAATCTAATATACTATTTTTGTTGCATTTTTTCTATGTTGATGGAAGTTCTAATTAGGTGGAGTTCTCTTCAGTAACTTGGTAAAAGAACTGTATCTGATTTAATGTTTTCAGTACTTCTATATCATATGATTTCCTTTTGGATCCTGAGTTCTGTATTTACCGCATAACAAGGTAAACGTGGACACCACAAATTCTGGGGCACACGGATGTTCAAATATGGAGATCTTGATGTCCTGCACTTTCTTCTTTCAAATCTGAACTG : GTGGGTGGAGGAGTATCATGTCGATGGCTTCCATTTTCATTCGCTCTCGTCCATGTTGTATACGCATAGTGGATTTGCTTCATTTACTGGTGACATGGATGA : ATACTGTAACCAATATGTTGACAAGGAGGCCTTATTGTACCTCATATTAGCAAATGAAGTACTACATGCTCTTCATCCTAATGTGATCACGATTGCTGAGGAT : GCAACTCTGTATCCTGGACTCTGCGATCCAACTTCTCAAGGTGGACTGGGCTTTGATTATTTTACCAATCTTTCTGCCTCAGAGATGTGGCTTGCATTACTTGAAAATACTCCTGATCATGAATG</gDNA_template>
            <first_frame> A  S  Q  T  P  F  S  L  L  L  Y  *  *  I  *  Y  T  I  F  V  A  F  F  L  C  *  W  K  F  *  L  G  G  V  L  F  S  N  L  V  K  E  L  Y  L  I  *  C  F  Q  Y  F  Y  I  I  *  F  P  F  G  S  *  V  L  Y  L  P  H  N  K  V  N  V  D  T  T  N  S  G  A  H  G  C  S  N  M  E  I  L  M  S  C  T  F  F  F  Q  I  *  T   : G  G  W  R  S  I  M  S  M  A  S  I  F  I  R  S  R  P  C  C  I  R  I  V  D  L  L  H  L  L  V  T  W  M   : N  T  V  T  N  M  L  T  R  R  P  Y  C  T  S  Y  *  Q  M  K  Y  Y  M  L  F  I  L  M  *  S  R  L  L  R  M :   Q  L  C  I  L  D  S  A  I  Q  L  L  K  V  D  W  A  L  I  I  L  P  I  F  L  P  Q  R  C  G  L  H  Y  L  K  I  L  L  I  M  N  </first_frame>
            <second_frame>  Q  V  R  H  H  F  H  C  Y  C  T  S  K  S  N  I  L  F  L  L  H  F  F  Y  V  D  G  S  S  N  *  V  E  F  S  S  V  T  W  *  K  N  C  I  *  F  N  V  F  S  T  S  I  S  Y  D  F  L  L  D  P  E  F  C  I  Y  R  I  T  R  *  T  W  T  P  Q  I  L  G  H  T  D  V  Q  I  W  R  S  *  C  P  A  L  S  S  F  K  S  E  L  :  V  G  G  G  V  S  C  R  W  L  P  F  S  F  A  L  V  H  V  V  Y  A  *  W  I  C  F  I  Y  W  *  H  G  *  :  I  L  *  P  I  C  *  Q  G  G  L  I  V  P  H  I  S  K  *  S  T  T  C  S  S  S  *  C  D  H  D  C  *  G   : C  N  S  V  S  W  T  L  R  S  N  F  S  R  W  T  G  L  *  L  F  Y  Q  S  F  C  L  R  D  V  A  C  I  T  *  K  Y  S  *  S  *  M </second_frame>
            <third_frame>   K  S  D  T  I  F  T  V  I  V  L  V  N  L  I  Y  Y  F  C  C  I  F  S  M  L  M  E  V  L  I  R  W  S  S  L  Q  *  L  G  K  R  T  V  S  D  L  M  F  S  V  L  L  Y  H  M  I  S  F  W  I  L  S  S  V  F  T  A  *  Q  G  K  R  G  H  H  K  F  W  G  T  R  M  F  K  Y  G  D  L  D  V  L  H  F  L  L  S  N  L  N  W :   W  V  E  E  Y  H  V  D  G  F  H  F  H  S  L  S  S  M  L  Y  T  H  S  G  F  A  S  F  T  G  D  M  D  E :   Y  C  N  Q  Y  V  D  K  E  A  L  L  Y  L  I  L  A  N  E  V  L  H  A  L  H  P  N  V  I  T  I  A  E  D  :  A  T  L  Y  P  G  L  C  D  P  T  S  Q  G  G  L  G  F  D  Y  F  T  N  L  S  A  S  E  M  W  L  A  L  L  E  N  T  P  D  H  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0047K21.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42492" stop="42586"/>
                    <exon start="44508" stop="44609"/>
                    <exon start="44921" stop="45023"/>
                    <exon start="45781" stop="45903"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGKRGHHKFWGTRMFKYGDLDVLHFLLSNLNWWVEEYHVDGFHFHSLSSMLYTHSGFASFTGDMDEYCNQYVDKEALLYLILANEVLHALHPNVITIAEDATLYPGLCDPTSQGGLGFDYFTNLSASEMWLALLENTPDHE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="46219" PGL_stop="49910"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46219" e_stop="46323"/>
            <exon e_start="46926" e_stop="47003"/>
            <exon e_start="47095" e_stop="47202"/>
            <exon e_start="48055" e_stop="48135"/>
            <exon e_start="48311" e_stop="48415"/>
            <exon e_start="49004" e_stop="49089"/>
            <exon e_start="49257" e_stop="49311"/>
            <exon e_start="49387" e_stop="49466"/>
            <exon e_start="49582" e_stop="49910"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.526" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.635" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="0.962"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46219" e_stop="46323" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.526">
            <gDNA_intron_boundary i_start="46324" i_stop="46925" i_length="602"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46926" e_stop="47003" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.635">
            <gDNA_intron_boundary i_start="47004" i_stop="47094" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47095" e_stop="47202" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.947" acc_prob="0.958">
            <gDNA_intron_boundary i_start="47203" i_stop="48054" i_length="852"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48055" e_stop="48135" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.951">
            <gDNA_intron_boundary i_start="48136" i_stop="48310" i_length="175"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48311" e_stop="48415" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48416" i_stop="49003" i_length="588"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49004" e_stop="49089" e_length="86"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="49090" i_stop="49256" i_length="167"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="49257" e_stop="49311" e_length="55"/>
          </exon>
          <intron i_serial="7" don_prob="0.976" acc_prob="0.935">
            <gDNA_intron_boundary i_start="49312" i_stop="49386" i_length="75"/>
          </intron>
          <exon e_serial="8" e_score="0.962">
            <gDNA_exon_boundary e_start="49387" e_stop="49466" e_length="80"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49467" i_stop="49581" i_length="115"/>
          </intron>
          <exon e_serial="9" e_score="0.985">
            <gDNA_exon_boundary e_start="49582" e_stop="49910" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46219" stop="46323"/>
              <exon start="46926" stop="47003"/>
              <exon start="47095" stop="47202"/>
              <exon start="48055" stop="48135"/>
              <exon start="48311" stop="48387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47164" stop="47202"/>
              <exon start="48055" stop="48135"/>
              <exon start="48311" stop="48415"/>
              <exon start="49004" stop="49089"/>
              <exon start="49257" stop="49311"/>
              <exon start="49387" stop="49466"/>
              <exon start="49582" stop="49910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345070" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCATTTCTGGAGGTCGTTCCTTCGCAGAAATACTGATTGGTAACTCTTTGGGGAAATCTTCCATATCACAAGAGTCATTGCTTAGAGGCTGCTCATTACACAAG : ATGATCAGATTAATTACATCTACAATTGGTGGTCATGCATACCTAAACTTCATGGGCAATGAATTTGGGCACCCAAAG : AGAGTAGAGTTTCCAATGTCAAGCAACAATTTCTCCTTTTCACTGGCTAACCGTCGCTGGGATCTATTGGAAGATGATGTACATTATCGATTGTTCTCATTTGATAAG : GATATGATGGACTTGGATAAAAATGGGAGAATTCTGTCCAGAGGTCTTGCCAACATTCACCATGTCAATGATACTACCATG : GTGATATCTTACTTGAGAGGTCCCAATCTCTTTGTGTTCAACTTTCATCCTGTCAATTCATATGAAAGATACATTATAGGTGTTGAAGAAGCTGGAGAGTATCAA : GTCACATTAAATACAGATGAAAAGAAGTATGGTGGTAGAGCACTACTTGGCCACGATCAGAATATTCAAAGAACCATTAGTAGAAG : AGCTGATGGAATGAGATTTTGCTTGGAAGTGCCTCTGCCAAGTAGAAGTGCTCAG : GTCTACAAGTTGACCCGAATTCTAAGAGCATGATCACTCTAGTAATCAAAGTGCCTCATATGATGGACACAAAAGGAAAG : GTTCTACATTGCCCTATACTGATCAATATTGTGGCCTTTTTGAGGTGAGTTTCTGTGATTCTTGAGCACAGGCTTTTGGCTAGTCAGTTATCATGAACTTTTGCCTTCAGCATCCGGATACTCTCTTCTCCTGAGCAATGACACTTCGACGAGAAAAAAACTGGCTTGTCATGGGGGTCAAAAGCATCTGCCAGATTAAGATTTCAAGCCTCAAGGAAAACTATCACCGCTTTAGGATACACACATTGACGAGTAAGCTCTGATACCTTTAAAGTTGCCAGTGTATATAAGAGCATTCAAATTGATGAGAACTTCAATTTTGCATTGGA</gDNA_template>
            <first_frame> S  I  S  G  G  R  S  F  A  E  I  L  I  G  N  S  L  G  K  S  S  I  S  Q  E  S  L  L  R  G  C  S  L  H  K  :  M  I  R  L  I  T  S  T  I  G  G  H  A  Y  L  N  F  M  G  N  E  F  G  H  P  K  :  R  V  E  F  P  M  S  S  N  N  F  S  F  S  L  A  N  R  R  W  D  L  L  E  D  D  V  H  Y  R  L  F  S  F  D  K  :  D  M  M  D  L  D  K  N  G  R  I  L  S  R  G  L  A  N  I  H  H  V  N  D  T  T  M  :  V  I  S  Y  L  R  G  P  N  L  F  V  F  N  F  H  P  V  N  S  Y  E  R  Y  I  I  G  V  E  E  A  G  E  Y  Q  :  V  T  L  N  T  D  E  K  K  Y  G  G  R  A  L  L  G  H  D  Q  N  I  Q  R  T  I  S  R  R :   A  D  G  M  R  F  C  L  E  V  P  L  P  S  R  S  A  Q  :  V  Y  K  L  T  R  I  L  R  A  *  S  L  *  *  S  K  C  L  I  *  W  T  Q  K  E  R :   F  Y  I  A  L  Y  *  S  I  L  W  P  F  *  G  E  F  L  *  F  L  S  T  G  F  W  L  V  S  Y  H  E  L  L  P  S  A  S  G  Y  S  L  L  L  S  N  D  T  S  T  R  K  K  L  A  C  H  G  G  Q  K  H  L  P  D  *  D  F  K  P  Q  G  K  L  S  P  L  *  D  T  H  I  D  E  *  A  L  I  P  L  K  L  P  V  Y  I  R  A  F  K  L  M  R  T  S  I  L  H  W  </first_frame>
            <second_frame>  P  F  L  E  V  V  P  S  Q  K  Y  *  L  V  T  L  W  G  N  L  P  Y  H  K  S  H  C  L  E  A  A  H  Y  T  R :   *  S  D  *  L  H  L  Q  L  V  V  M  H  T  *  T  S  W  A  M  N  L  G  T  Q  R :   E  *  S  F  Q  C  Q  A  T  I  S  P  F  H  W  L  T  V  A  G  I  Y  W  K  M  M  Y  I  I  D  C  S  H  L  I  R :   I  *  W  T  W  I  K  M  G  E  F  C  P  E  V  L  P  T  F  T  M  S  M  I  L  P  W :   *  Y  L  T  *  E  V  P  I  S  L  C  S  T  F  I  L  S  I  H  M  K  D  T  L  *  V  L  K  K  L  E  S  I  K :   S  H  *  I  Q  M  K  R  S  M  V  V  E  H  Y  L  A  T  I  R  I  F  K  E  P  L  V  E   : E  L  M  E  *  D  F  A  W  K  C  L  C  Q  V  E  V  L  R :   S  T  S  *  P  E  F  *  E  H  D  H  S  S  N  Q  S  A  S  Y  D  G  H  K  R  K   : G  S  T  L  P  Y  T  D  Q  Y  C  G  L  F  E  V  S  F  C  D  S  *  A  Q  A  F  G  *  S  V  I  M  N  F  C  L  Q  H  P  D  T  L  F  S  *  A  M  T  L  R  R  E  K  N  W  L  V  M  G  V  K  S  I  C  Q  I  K  I  S  S  L  K  E  N  Y  H  R  F  R  I  H  T  L  T  S  K  L  *  Y  L  *  S  C  Q  C  I  *  E  H  S  N  *  *  E  L  Q  F  C  I  G </second_frame>
            <third_frame>   H  F  W  R  S  F  L  R  R  N  T  D  W  *  L  F  G  E  I  F  H  I  T  R  V  I  A  *  R  L  L  I  T  Q   : D  D  Q  I  N  Y  I  Y  N  W  W  S  C  I  P  K  L  H  G  Q  *  I  W  A  P  K   : E  S  R  V  S  N  V  K  Q  Q  F  L  L  F  T  G  *  P  S  L  G  S  I  G  R  *  C  T  L  S  I  V  L  I  *  *   : G  Y  D  G  L  G  *  K  W  E  N  S  V  Q  R  S  C  Q  H  S  P  C  Q  *  Y  Y  H   : G  D  I  L  L  E  R  S  Q  S  L  C  V  Q  L  S  S  C  Q  F  I  *  K  I  H  Y  R  C  *  R  S  W  R  V  S   : S  H  I  K  Y  R  *  K  E  V  W  W  *  S  T  T  W  P  R  S  E  Y  S  K  N  H  *  *  K  :  S  *  W  N  E  I  L  L  G  S  A  S  A  K  *  K  C  S   : G  L  Q  V  D  P  N  S  K  S  M  I  T  L  V  I  K  V  P  H  M  M  D  T  K  G  K  :  V  L  H  C  P  I  L  I  N  I  V  A  F  L  R  *  V  S  V  I  L  E  H  R  L  L  A  S  Q  L  S  *  T  F  A  F  S  I  R  I  L  S  S  P  E  Q  *  H  F  D  E  K  K  T  G  L  S  W  G  S  K  A  S  A  R  L  R  F  Q  A  S  R  K  T  I  T  A  L  G  Y  T  H  *  R  V  S  S  D  T  F  K  V  A  S  V  Y  K  S  I  Q  I  D  E  N  F  N  F  A  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0047K21.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46219" stop="46323"/>
                    <exon start="46926" stop="47003"/>
                    <exon start="47095" stop="47202"/>
                    <exon start="48055" stop="48135"/>
                    <exon start="48311" stop="48415"/>
                    <exon start="49004" stop="49089"/>
                    <exon start="49257" stop="49311"/>
                    <exon start="49387" stop="49419"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SISGGRSFAEILIGNSLGKSSISQESLLRGCSLHKMIRLITSTIGGHAYLNFMGNEFGHPKRVEFPMSSNNFSFSLANRRWDLLEDDVHYRLFSFDKDMMDLDKNGRILSRGLANIHHVNDTTMVISYLRGPNLFVFNFHPVNSYERYIIGVEEAGEYQVTLNTDEKKYGGRALLGHDQNIQRTISRRADGMRFCLEVPLPSRSAQVYKLTRILRA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="54953" PGL_stop="57201"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54953" e_stop="55055"/>
            <exon e_start="56520" e_stop="57201"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.752" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54953" e_stop="55055" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.752">
            <gDNA_intron_boundary i_start="55056" i_stop="56519" i_length="1464"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="56520" e_stop="57201" e_length="682"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54953" stop="55055"/>
              <exon start="56520" stop="57201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713403" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCGCTGTCCACTTTTCAGCAATTAGTAGTGCACCGCAGCACTTCCCGCCGACCGCCGCGACCAGCAGCAGCCAGCTAGCGGCAGCGACCAGTCTAGATACG : GTTTTCTTCTCCAAACAATCTTTGGTTAAGCATCGATGAGTTCTCAGGCCGTTACTTCAAGTGAGGACATTTTTGACTCATCGTTGAATCTAGAGGACATTCATTACAAAGAAGGCTACTCGGTAGGCTATACGGATGGCCTAAATTCTGGTAAAGATGAAGGCAAACAGGTAGGACTCAAAAAGGGTTTTGAAGTAGGCGAAGAATTGGGTTTTTACAAAGGTTGTATTGATGTATGGAATGCTGCTATCTTAGTAGAGCCAACCTGTTTCTCATCTCGAGTGCAGAAAAGCATCAAACAGATGGATGAATTGCTCAATAAGTACCCCTTCTCTGACCCAGAGAACGAGTCTGCTACCGATATTATCGACTCCCTGAGACTGAAATTTAGAGCTATTTGTGCAACTCTGAATATTAAACCAGAGTATGATGGGTACCCCAAAGCCTCTGGGATCGATAACTCCGGTTTCTGATTGGTCTAAATTAGTCACTTCCTTTGTAGACATATAAATTTGCATCAAGTTGGTAAAAGAACTGTCATTACATATATATCAGTGTTGAAAAGATTCATGCCAGATATTATATGTATTTGCTGGTTTTAAATATGTCTGTGTGCGGTCGTGTCTATAGATATCTATCTATATATTGTAGTTCCAGGATGATTTCATAGATGATCACTCAA</gDNA_template>
            <first_frame> H  R  C  P  L  F  S  N  *  *  C  T  A  A  L  P  A  D  R  R  D  Q  Q  Q  P  A  S  G  S  D  Q  S  R  Y   : G  F  L  L  Q  T  I  F  G  *  A  S  M  S  S  Q  A  V  T  S  S  E  D  I  F  D  S  S  L  N  L  E  D  I  H  Y  K  E  G  Y  S  V  G  Y  T  D  G  L  N  S  G  K  D  E  G  K  Q  V  G  L  K  K  G  F  E  V  G  E  E  L  G  F  Y  K  G  C  I  D  V  W  N  A  A  I  L  V  E  P  T  C  F  S  S  R  V  Q  K  S  I  K  Q  M  D  E  L  L  N  K  Y  P  F  S  D  P  E  N  E  S  A  T  D  I  I  D  S  L  R  L  K  F  R  A  I  C  A  T  L  N  I  K  P  E  Y  D  G  Y  P  K  A  S  G  I  D  N  S  G  F  *  L  V  *  I  S  H  F  L  C  R  H  I  N  L  H  Q  V  G  K  R  T  V  I  T  Y  I  S  V  L  K  R  F  M  P  D  I  I  C  I  C  W  F  *  I  C  L  C  A  V  V  S  I  D  I  Y  L  Y  I  V  V  P  G  *  F  H  R  *  S  L   </first_frame>
            <second_frame>  T  A  V  H  F  S  A  I  S  S  A  P  Q  H  F  P  P  T  A  A  T  S  S  S  Q  L  A  A  A  T  S  L  D  T  :  V  F  F  S  K  Q  S  L  V  K  H  R  *  V  L  R  P  L  L  Q  V  R  T  F  L  T  H  R  *  I  *  R  T  F  I  T  K  K  A  T  R  *  A  I  R  M  A  *  I  L  V  K  M  K  A  N  R  *  D  S  K  R  V  L  K  *  A  K  N  W  V  F  T  K  V  V  L  M  Y  G  M  L  L  S  *  *  S  Q  P  V  S  H  L  E  C  R  K  A  S  N  R  W  M  N  C  S  I  S  T  P  S  L  T  Q  R  T  S  L  L  P  I  L  S  T  P  *  D  *  N  L  E  L  F  V  Q  L  *  I  L  N  Q  S  M  M  G  T  P  K  P  L  G  S  I  T  P  V  S  D  W  S  K  L  V  T  S  F  V  D  I  *  I  C  I  K  L  V  K  E  L  S  L  H  I  Y  Q  C  *  K  D  S  C  Q  I  L  Y  V  F  A  G  F  K  Y  V  C  V  R  S  C  L  *  I  S  I  Y  I  L  *  F  Q  D  D  F  I  D  D  H  S  </second_frame>
            <third_frame>   P  L  S  T  F  Q  Q  L  V  V  H  R  S  T  S  R  R  P  P  R  P  A  A  A  S  *  R  Q  R  P  V  *  I  R :   F  S  S  P  N  N  L  W  L  S  I  D  E  F  S  G  R  Y  F  K  *  G  H  F  *  L  I  V  E  S  R  G  H  S  L  Q  R  R  L  L  G  R  L  Y  G  W  P  K  F  W  *  R  *  R  Q  T  G  R  T  Q  K  G  F  *  S  R  R  R  I  G  F  L  Q  R  L  Y  *  C  M  E  C  C  Y  L  S  R  A  N  L  F  L  I  S  S  A  E  K  H  Q  T  D  G  *  I  A  Q  *  V  P  L  L  *  P  R  E  R  V  C  Y  R  Y  Y  R  L  P  E  T  E  I  *  S  Y  L  C  N  S  E  Y  *  T  R  V  *  W  V  P  Q  S  L  W  D  R  *  L  R  F  L  I  G  L  N  *  S  L  P  L  *  T  Y  K  F  A  S  S  W  *  K  N  C  H  Y  I  Y  I  S  V  E  K  I  H  A  R  Y  Y  M  Y  L  L  V  L  N  M  S  V  C  G  R  V  Y  R  Y  L  S  I  Y  C  S  S  R  M  I  S  *  M  I  T  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0047K21.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56549" stop="56992"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASMSSQAVTSSEDIFDSSLNLEDIHYKEGYSVGYTDGLNSGKDEGKQVGLKKGFEVGEELGFYKGCIDVWNAAILVEPTCFSSRVQKSIKQMDELLNKYPFSDPENESATDIIDSLRLKFRAICATLNIKPEYDGYPKASGIDNSGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="61007" PGL_stop="57497"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61007" e_stop="60728"/>
            <exon e_start="60633" e_stop="60541"/>
            <exon e_start="60379" e_stop="60324"/>
            <exon e_start="60184" e_stop="60120"/>
            <exon e_start="60041" e_stop="59967"/>
            <exon e_start="59818" e_stop="59740"/>
            <exon e_start="59390" e_stop="59352"/>
            <exon e_start="59244" e_stop="59136"/>
            <exon e_start="58787" e_stop="58669"/>
            <exon e_start="58166" e_stop="58050"/>
            <exon e_start="57950" e_stop="57497"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.832" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.714" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.542" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.890" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61007" e_stop="60728" e_length="280"/>
          </exon>
          <intron i_serial="1" don_prob="0.832" acc_prob="0.993">
            <gDNA_intron_boundary i_start="60727" i_stop="60634" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60633" e_stop="60541" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.873" acc_prob="1.000">
            <gDNA_intron_boundary i_start="60540" i_stop="60380" i_length="161"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60379" e_stop="60324" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.953">
            <gDNA_intron_boundary i_start="60323" i_stop="60185" i_length="139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60184" e_stop="60120" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.905" acc_prob="0.999">
            <gDNA_intron_boundary i_start="60119" i_stop="60042" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="60041" e_stop="59967" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.993">
            <gDNA_intron_boundary i_start="59966" i_stop="59819" i_length="148"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="59818" e_stop="59740" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="59739" i_stop="59391" i_length="349"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="59390" e_stop="59352" e_length="39"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.871">
            <gDNA_intron_boundary i_start="59351" i_stop="59245" i_length="107"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="59244" e_stop="59136" e_length="109"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.714">
            <gDNA_intron_boundary i_start="59135" i_stop="58788" i_length="348"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="58787" e_stop="58669" e_length="119"/>
          </exon>
          <intron i_serial="9" don_prob="0.856" acc_prob="0.542">
            <gDNA_intron_boundary i_start="58668" i_stop="58167" i_length="502"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="58166" e_stop="58050" e_length="117"/>
          </exon>
          <intron i_serial="10" don_prob="0.917" acc_prob="0.890">
            <gDNA_intron_boundary i_start="58049" i_stop="57951" i_length="99"/>
          </intron>
          <exon e_serial="11" e_score="0.980">
            <gDNA_exon_boundary e_start="57950" e_stop="57497" e_length="454"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61007" stop="60728"/>
              <exon start="60633" stop="60541"/>
              <exon start="60379" stop="60324"/>
              <exon start="60184" stop="60120"/>
              <exon start="60041" stop="60004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61001" stop="60728"/>
              <exon start="60633" stop="60541"/>
              <exon start="60379" stop="60324"/>
              <exon start="60184" stop="60139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60952" stop="60728"/>
              <exon start="60633" stop="60541"/>
              <exon start="60379" stop="60324"/>
              <exon start="60184" stop="60120"/>
              <exon start="60041" stop="59967"/>
              <exon start="59818" stop="59740"/>
              <exon start="59390" stop="59352"/>
              <exon start="59244" stop="59200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60160" stop="60120"/>
              <exon start="60041" stop="59967"/>
              <exon start="59818" stop="59740"/>
              <exon start="59390" stop="59352"/>
              <exon start="59244" stop="59136"/>
              <exon start="58787" stop="58669"/>
              <exon start="58166" stop="58051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60160" stop="60120"/>
              <exon start="60041" stop="59967"/>
              <exon start="59818" stop="59740"/>
              <exon start="59390" stop="59352"/>
              <exon start="59244" stop="59136"/>
              <exon start="58787" stop="58669"/>
              <exon start="58166" stop="58067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60034" stop="59967"/>
              <exon start="59818" stop="59740"/>
              <exon start="59390" stop="59352"/>
              <exon start="59244" stop="59136"/>
              <exon start="58787" stop="58669"/>
              <exon start="58166" stop="58058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58785" stop="58669"/>
              <exon start="58166" stop="58050"/>
              <exon start="57950" stop="57497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58785" stop="58669"/>
              <exon start="58166" stop="58050"/>
              <exon start="57950" stop="57551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352615" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAATATTCATATTCTTCCTTAGCTTCTATTAATGGATTTCAATGGCGTGGAAGCAACTCGTATTCGCCAGGAAATCGATCACTTGAAGTCCAAAAAGAGAAATATAGAGCAACAAATTTCTGCTCTCGAAGCGCAGCTTAATCAACTTGAAGTCAATTCAAGTACAGTGTGTCCACAGCCGCTTTCAAATGGAGATTTGAGCAATTCAAATGGTTTATCTCCCGATATGATTTACAGATACAGTCGGCACTTATTGCTTCCTTCATTTGGCGTTCAAG : GTCAGGCGAATCTATTGAAATCTTCAGTTTTGGTAATTGGAGCTGGAGGTTTAGGATCACCTGCTTTGCTATATCTTGCTGCCTGTGGAGTTG : GTCGAATGGGTATAGTTGATCATGATGTAGTGGAACTTAACAATCTTCAGAGGCAG : ATAATACACACTGAAGCATATATTGGAAAGTCAAAAGTAGAGTCAGCTGCTGCTACTTGTCGCTC : GATCAACTCTTCCACTCAGATTGTGGAGCACAGAGAAGCCTTCCGCACGTCCAATGCTTTGGAAATTGTGAGCAA : ATATGATGTGGTAGTAGATGCAACAGACAATGCTCCAAGCCGCTACATGATCAATGATTGCTGTGTTGTGCTTGGGAAG : CCTCTTGTATCTGGAGCTGCTCTAGGACTAGAAGGGCAG : CTGACGGTTTACAATTACAATGGAGGTCCATGCTATCGATGCCTATTTCCAACTCCTCCACCCACAAATGCTTGTCAGAGATGTGCTGATAGTGGTGTACTTGGAGTTG : TTCCAGGTGTTATTGGATGTCTTCAAGCCTTAGAGGCCATAAAGGTTGCTAGCTTGGTTGGAGAACCACTCTCCGGAAGAATGCTTCTTTTGGATGCGCTGTCAGGCCGGTTCCGTAAT : GTCAAACTACGTGGAAGGTCATTGCAGTGCGAAGCTTGTGGAGATGATGCAGTACTGACAAGGCAGACATTTTCGGAGTTTGATTATGAAAAGTTTACTCAAACTCCATTATCCACG : GTTCCATTGAAGTTGAACTTTCTTTCAGCAGATGATCGAATTAGCACCAAAGAGTACAATGAGAAAGTGAGGAAAGGAGACGCACATATATTAGTGGATGTTCGACCAAGTCATCACTATAAGATTGTTTCACTTCCCAACTCTATGAACATACCTCTATCGACGTTGGAAGGTAGATTGCCTGAAATATCTGCTGCCTTGGAAAAAGAGGTAAATAAAGAGAATGGTTCAAATACTTCTCTGTTTGTAATATGCAGAAGAGGCAATGATTCACAAGTTGCTGTTGAATTGCTTCACAAATTGGGTTTTACTTCAGCAAAGGATATAATAGGGGGCTTAGAGTCATGGACTCACAACGTGGATCCAAAGTTCCCTACCTACTAACTATATACCTATAAAATTGTCATTTATTCTTCACTTAAATTTTTTCCCCCTTGAATCAAAAGCTTAATTT</gDNA_template>
            <first_frame> N  N  I  H  I  L  P  *  L  L  L  M  D  F  N  G  V  E  A  T  R  I  R  Q  E  I  D  H  L  K  S  K  K  R  N  I  E  Q  Q  I  S  A  L  E  A  Q  L  N  Q  L  E  V  N  S  S  T  V  C  P  Q  P  L  S  N  G  D  L  S  N  S  N  G  L  S  P  D  M  I  Y  R  Y  S  R  H  L  L  L  P  S  F  G  V  Q   : G  Q  A  N  L  L  K  S  S  V  L  V  I  G  A  G  G  L  G  S  P  A  L  L  Y  L  A  A  C  G  V   : G  R  M  G  I  V  D  H  D  V  V  E  L  N  N  L  Q  R  Q  :  I  I  H  T  E  A  Y  I  G  K  S  K  V  E  S  A  A  A  T  C  R  S :   I  N  S  S  T  Q  I  V  E  H  R  E  A  F  R  T  S  N  A  L  E  I  V  S  K :   Y  D  V  V  V  D  A  T  D  N  A  P  S  R  Y  M  I  N  D  C  C  V  V  L  G  K  :  P  L  V  S  G  A  A  L  G  L  E  G  Q  :  L  T  V  Y  N  Y  N  G  G  P  C  Y  R  C  L  F  P  T  P  P  P  T  N  A  C  Q  R  C  A  D  S  G  V  L  G  V   : V  P  G  V  I  G  C  L  Q  A  L  E  A  I  K  V  A  S  L  V  G  E  P  L  S  G  R  M  L  L  L  D  A  L  S  G  R  F  R  N  :  V  K  L  R  G  R  S  L  Q  C  E  A  C  G  D  D  A  V  L  T  R  Q  T  F  S  E  F  D  Y  E  K  F  T  Q  T  P  L  S  T  :  V  P  L  K  L  N  F  L  S  A  D  D  R  I  S  T  K  E  Y  N  E  K  V  R  K  G  D  A  H  I  L  V  D  V  R  P  S  H  H  Y  K  I  V  S  L  P  N  S  M  N  I  P  L  S  T  L  E  G  R  L  P  E  I  S  A  A  L  E  K  E  V  N  K  E  N  G  S  N  T  S  L  F  V  I  C  R  R  G  N  D  S  Q  V  A  V  E  L  L  H  K  L  G  F  T  S  A  K  D  I  I  G  G  L  E  S  W  T  H  N  V  D  P  K  F  P  T  Y  *  L  Y  T  Y  K  I  V  I  Y  S  S  L  K  F  F  P  P  *  I  K  S  L  I  </first_frame>
            <second_frame>  T  I  F  I  F  F  L  S  F  Y  *  W  I  S  M  A  W  K  Q  L  V  F  A  R  K  S  I  T  *  S  P  K  R  E  I  *  S  N  K  F  L  L  S  K  R  S  L  I  N  L  K  S  I  Q  V  Q  C  V  H  S  R  F  Q  M  E  I  *  A  I  Q  M  V  Y  L  P  I  *  F  T  D  T  V  G  T  Y  C  F  L  H  L  A  F  K  :  V  R  R  I  Y  *  N  L  Q  F  W  *  L  E  L  E  V  *  D  H  L  L  C  Y  I  L  L  P  V  E  L  :  V  E  W  V  *  L  I  M  M  *  W  N  L  T  I  F  R  G  R :   *  Y  T  L  K  H  I  L  E  S  Q  K  *  S  Q  L  L  L  L  V  A   : R  S  T  L  P  L  R  L  W  S  T  E  K  P  S  A  R  P  M  L  W  K  L  *  A   : N  M  M  W  *  *  M  Q  Q  T  M  L  Q  A  A  T  *  S  M  I  A  V  L  C  L  G  S :   L  L  Y  L  E  L  L  *  D  *  K  G  S :   *  R  F  T  I  T  M  E  V  H  A  I  D  A  Y  F  Q  L  L  H  P  Q  M  L  V  R  D  V  L  I  V  V  Y  L  E  L  :  F  Q  V  L  L  D  V  F  K  P  *  R  P  *  R  L  L  A  W  L  E  N  H  S  P  E  E  C  F  F  W  M  R  C  Q  A  G  S  V  M :   S  N  Y  V  E  G  H  C  S  A  K  L  V  E  M  M  Q  Y  *  Q  G  R  H  F  R  S  L  I  M  K  S  L  L  K  L  H  Y  P  R :   F  H  *  S  *  T  F  F  Q  Q  M  I  E  L  A  P  K  S  T  M  R  K  *  G  K  E  T  H  I  Y  *  W  M  F  D  Q  V  I  T  I  R  L  F  H  F  P  T  L  *  T  Y  L  Y  R  R  W  K  V  D  C  L  K  Y  L  L  P  W  K  K  R  *  I  K  R  M  V  Q  I  L  L  C  L  *  Y  A  E  E  A  M  I  H  K  L  L  L  N  C  F  T  N  W  V  L  L  Q  Q  R  I  *  *  G  A  *  S  H  G  L  T  T  W  I  Q  S  S  L  P  T  N  Y  I  P  I  K  L  S  F  I  L  H  L  N  F  F  P  L  E  S  K  A  *  F </second_frame>
            <third_frame>   Q  Y  S  Y  S  S  L  A  S  I  N  G  F  Q  W  R  G  S  N  S  Y  S  P  G  N  R  S  L  E  V  Q  K  E  K  Y  R  A  T  N  F  C  S  R  S  A  A  *  S  T  *  S  Q  F  K  Y  S  V  S  T  A  A  F  K  W  R  F  E  Q  F  K  W  F  I  S  R  Y  D  L  Q  I  Q  S  A  L  I  A  S  F  I  W  R  S  R :   S  G  E  S  I  E  I  F  S  F  G  N  W  S  W  R  F  R  I  T  C  F  A  I  S  C  C  L  W  S  W :   S  N  G  Y  S  *  S  *  C  S  G  T  *  Q  S  S  E  A   : D  N  T  H  *  S  I  Y  W  K  V  K  S  R  V  S  C  C  Y  L  S  L  :  D  Q  L  F  H  S  D  C  G  A  Q  R  S  L  P  H  V  Q  C  F  G  N  C  E  Q  :  I  *  C  G  S  R  C  N  R  Q  C  S  K  P  L  H  D  Q  *  L  L  C  C  A  W  E   : A  S  C  I  W  S  C  S  R  T  R  R  A   : A  D  G  L  Q  L  Q  W  R  S  M  L  S  M  P  I  S  N  S  S  T  H  K  C  L  S  E  M  C  *  *  W  C  T  W  S  C :   S  R  C  Y  W  M  S  S  S  L  R  G  H  K  G  C  *  L  G  W  R  T  T  L  R  K  N  A  S  F  G  C  A  V  R  P  V  P  *   : C  Q  T  T  W  K  V  I  A  V  R  S  L  W  R  *  C  S  T  D  K  A  D  I  F  G  V  *  L  *  K  V  Y  S  N  S  I  I  H   : G  S  I  E  V  E  L  S  F  S  R  *  S  N  *  H  Q  R  V  Q  *  E  S  E  E  R  R  R  T  Y  I  S  G  C  S  T  K  S  S  L  *  D  C  F  T  S  Q  L  Y  E  H  T  S  I  D  V  G  R  *  I  A  *  N  I  C  C  L  G  K  R  G  K  *  R  E  W  F  K  Y  F  S  V  C  N  M  Q  K  R  Q  *  F  T  S  C  C  *  I  A  S  Q  I  G  F  Y  F  S  K  G  Y  N  R  G  L  R  V  M  D  S  Q  R  G  S  K  V  P  Y  L  L  T  I  Y  L  *  N  C  H  L  F  F  T  *  I  F  S  P  L  N  Q  K  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0047K21.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60983" stop="60728"/>
                    <exon start="60633" stop="60541"/>
                    <exon start="60379" stop="60324"/>
                    <exon start="60184" stop="60120"/>
                    <exon start="60041" stop="59967"/>
                    <exon start="59818" stop="59740"/>
                    <exon start="59390" stop="59352"/>
                    <exon start="59244" stop="59136"/>
                    <exon start="58787" stop="58669"/>
                    <exon start="58166" stop="58050"/>
                    <exon start="57950" stop="57567"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1389</number_coding_nucleotides>
                  <number_encoded_amino_acids>463</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLMDFNGVEATRIRQEIDHLKSKKRNIEQQISALEAQLNQLEVNSSTVCPQPLSNGDLSNSNGLSPDMIYRYSRHLLLPSFGVQGQANLLKSSVLVIGAGGLGSPALLYLAACGVGRMGIVDHDVVELNNLQRQIIHTEAYIGKSKVESAAATCRSINSSTQIVEHREAFRTSNALEIVSKYDVVVDATDNAPSRYMINDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTNACQRCADSGVLGVVPGVIGCLQALEAIKVASLVGEPLSGRMLLLDALSGRFRNVKLRGRSLQCEACGDDAVLTRQTFSEFDYEKFTQTPLSTVPLKLNFLSADDRISTKEYNEKVRKGDAHILVDVRPSHHYKIVSLPNSMNIPLSTLEGRLPEISAALEKEVNKENGSNTSLFVICRRGNDSQVAVELLHKLGFTSAKDIIGGLESWTHNVDPKFPTY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58726" e_stop="58245"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="58726" e_stop="58245" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58726" stop="58245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58726" stop="58245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238432" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAACCACTCTCCGGAAGAATGCTTCTTTTGGATGCGCTGTCAGGCCGGTTCCGTAATGTGTGTTTGATATTCTAATTTCTCATACTTGCTGTCACTTTGTTCTTTATTCTTTCTGAGCAGAGGATATGTTGCAGTCTTTTTTTGCATTCTGAAATAAGCAGTGAGCAAAAAATGAAATTAGGTAAAACTAAGGCGAGGTATAATAATAATTCTTTTGATAAATCCTTTTGGAATTAGCCAATAAACTTTTAAATCGATAGTAGGATGTGAAAAAAAGTAAATTACAGGGCAGATGATATCTGCAATCGTTATTGAAAAAAATAAAAGATTTTTCGAAGTAGCTAGCCCACAAGTACTTGCAATACATGTGTTTTACATCTATTCTATACATGTCTTGTACTAGTAATTAATTAGGACTTCCACAATCTCTTGCACATGTATCAATTTATTTGGAATATCTTCTTTCAATATTTATTTATTT</gDNA_template>
            <first_frame> R  T  T  L  R  K  N  A  S  F  G  C  A  V  R  P  V  P  *  C  V  F  D  I  L  I  S  H  T  C  C  H  F  V  L  Y  S  F  *  A  E  D  M  L  Q  S  F  F  A  F  *  N  K  Q  *  A  K  N  E  I  R  *  N  *  G  E  V  *  *  *  F  F  *  *  I  L  L  E  L  A  N  K  L  L  N  R  *  *  D  V  K  K  S  K  L  Q  G  R  *  Y  L  Q  S  L  L  K  K  I  K  D  F  S  K  *  L  A  H  K  Y  L  Q  Y  M  C  F  T  S  I  L  Y  M  S  C  T  S  N  *  L  G  L  P  Q  S  L  A  H  V  S  I  Y  L  E  Y  L  L  S  I  F  I  Y   </first_frame>
            <second_frame>  E  P  L  S  G  R  M  L  L  L  D  A  L  S  G  R  F  R  N  V  C  L  I  F  *  F  L  I  L  A  V  T  L  F  F  I  L  S  E  Q  R  I  C  C  S  L  F  L  H  S  E  I  S  S  E  Q  K  M  K  L  G  K  T  K  A  R  Y  N  N  N  S  F  D  K  S  F  W  N  *  P  I  N  F  *  I  D  S  R  M  *  K  K  V  N  Y  R  A  D  D  I  C  N  R  Y  *  K  K  *  K  I  F  R  S  S  *  P  T  S  T  C  N  T  C  V  L  H  L  F  Y  T  C  L  V  L  V  I  N  *  D  F  H  N  L  L  H  M  Y  Q  F  I  W  N  I  F  F  Q  Y  L  F  I  </second_frame>
            <third_frame>   N  H  S  P  E  E  C  F  F  W  M  R  C  Q  A  G  S  V  M  C  V  *  Y  S  N  F  S  Y  L  L  S  L  C  S  L  F  F  L  S  R  G  Y  V  A  V  F  F  C  I  L  K  *  A  V  S  K  K  *  N  *  V  K  L  R  R  G  I  I  I  I  L  L  I  N  P  F  G  I  S  Q  *  T  F  K  S  I  V  G  C  E  K  K  *  I  T  G  Q  M  I  S  A  I  V  I  E  K  N  K  R  F  F  E  V  A  S  P  Q  V  L  A  I  H  V  F  Y  I  Y  S  I  H  V  L  Y  *  *  L  I  R  T  S  T  I  S  C  T  C  I  N  L  F  G  I  S  S  F  N  I  Y  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0047K21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="62585" PGL_stop="62379"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62585" e_stop="62379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="62585" e_stop="62379" e_length="207"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62585" stop="62379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACCATTTTGAGAGCAAAGTGAGGTATTCTATAGACTATACAAGAAAAATAGTTTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAATCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACATTGAGTGTTGTATTCGTGACTACACAGTGTAAAATTCCTTACTATAGTAATATCAGTTGCTCCTCT</gDNA_template>
            <first_frame> K  N  H  F  E  S  K  V  R  Y  S  I  D  Y  T  R  K  I  V  C  E  E  K  *  S  V  S  D  I  L  V  R  R  N  Q  K  S  V  V  P  F  E  C  V  V  V  T  L  S  V  V  F  V  T  T  Q  C  K  I  P  Y  Y  S  N  I  S  C  S  S </first_frame>
            <second_frame>  K  T  I  L  R  A  K  *  G  I  L  *  T  I  Q  E  K  *  F  V  K  K  N  R  V  *  A  I  F  *  *  D  G  I  K  R  V  L  F  L  L  S  V  *  *  S  H  *  V  L  Y  S  *  L  H  S  V  K  F  L  T  I  V  I  S  V  A  P   </second_frame>
            <third_frame>   K  P  F  *  E  Q  S  E  V  F  Y  R  L  Y  K  K  N  S  L  *  R  K  I  E  C  E  R  Y  F  S  K  T  E  S  K  E  C  C  S  F  *  V  C  S  S  H  I  E  C  C  I  R  D  Y  T  V  *  N  S  L  L  *  *  Y  Q  L  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0047K21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="69177" PGL_stop="66642"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69177" e_stop="68927"/>
            <exon e_start="67206" e_stop="66916"/>
            <exon e_start="66782" e_stop="66642"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69177" e_stop="68927" e_length="251"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68926" i_stop="67207" i_length="1720"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67206" e_stop="66916" e_length="291"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.956">
            <gDNA_intron_boundary i_start="66915" i_stop="66783" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66782" e_stop="66642" e_length="141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69177" stop="68927"/>
              <exon start="67206" stop="66958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69046" stop="68927"/>
              <exon start="67206" stop="66916"/>
              <exon start="66782" stop="66642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69046" stop="68927"/>
              <exon start="67206" stop="66916"/>
              <exon start="66782" stop="66689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307200" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAGTTTGGTGACAAGTTTAGAGGCAAGTATGATACAAGTGTTGGAGCAGCCAAAGGTTACTATCCATCTTTGAGTGGTTACAAAGATGAGTTGTTATGGGCAGCTATATGGCTCTACAAAGCCACCGACAAATCTCATTATTTAAAATATGCATTACAAAATGCTCAATCTTTTGGGGGTACGACTTGGGCCATTTCAGAATTTAGTTGGGATGTCAAATACGCTGGCCTTCAACTACTCGCCGCTACG : TTACCGAGGCAAGATAAGAGAGAGAAAGAAGACGATAAAATTATCGAAGAATATCGTTCGAAAGGCGAATATTACCTTTGTTCATGTCTAAACCAAAATAATAAAACTAATGTACATCGCACCCCAGGGGGCTTATTGTACATCCGTCAATGGAACAACATGCAATACGTATCAAATGCAGCATTTCTCCTCATGGTGTACTCCGATCATCTCAGGGAAACTAATCAAATGGCTAGATGTGAACGTCGTTCCGTGGGCCCCGAAGAAATCTTCGCGTTTGCAAAATCACAG : GTTGACTATATCTTGGGTTTGAACCCGCGAGGTGTGAGCTACTTGGTTGGCTACGGACCTAAGTATCCCCAAAGGGTGCACCATAGGGGTGCATCGGTGGTCTCATTCAAAAAGCGTAAAAATTTCATAAGTTGTACCCAA</gDNA_template>
            <first_frame> L  S  L  V  T  S  L  E  A  S  M  I  Q  V  L  E  Q  P  K  V  T  I  H  L  *  V  V  T  K  M  S  C  Y  G  Q  L  Y  G  S  T  K  P  P  T  N  L  I  I  *  N  M  H  Y  K  M  L  N  L  L  G  V  R  L  G  P  F  Q  N  L  V  G  M  S  N  T  L  A  F  N  Y  S  P  L  R :   Y  R  G  K  I  R  E  R  K  K  T  I  K  L  S  K  N  I  V  R  K  A  N  I  T  F  V  H  V  *  T  K  I  I  K  L  M  Y  I  A  P  Q  G  A  Y  C  T  S  V  N  G  T  T  C  N  T  Y  Q  M  Q  H  F  S  S  W  C  T  P  I  I  S  G  K  L  I  K  W  L  D  V  N  V  V  P  W  A  P  K  K  S  S  R  L  Q  N  H  R :   L  T  I  S  W  V  *  T  R  E  V  *  A  T  W  L  A  T  D  L  S  I  P  K  G  C  T  I  G  V  H  R  W  S  H  S  K  S  V  K  I  S  *  V  V  P   </first_frame>
            <second_frame>  *  V  W  *  Q  V  *  R  Q  V  *  Y  K  C  W  S  S  Q  R  L  L  S  I  F  E  W  L  Q  R  *  V  V  M  G  S  Y  M  A  L  Q  S  H  R  Q  I  S  L  F  K  I  C  I  T  K  C  S  I  F  W  G  Y  D  L  G  H  F  R  I  *  L  G  C  Q  I  R  W  P  S  T  T  R  R  Y   : V  T  E  A  R  *  E  R  E  R  R  R  *  N  Y  R  R  I  S  F  E  R  R  I  L  P  L  F  M  S  K  P  K  *  *  N  *  C  T  S  H  P  R  G  L  I  V  H  P  S  M  E  Q  H  A  I  R  I  K  C  S  I  S  P  H  G  V  L  R  S  S  Q  G  N  *  S  N  G  *  M  *  T  S  F  R  G  P  R  R  N  L  R  V  C  K  I  T   : G  *  L  Y  L  G  F  E  P  A  R  C  E  L  L  G  W  L  R  T  *  V  S  P  K  G  A  P  *  G  C  I  G  G  L  I  Q  K  A  *  K  F  H  K  L  Y  P  </second_frame>
            <third_frame>   E  F  G  D  K  F  R  G  K  Y  D  T  S  V  G  A  A  K  G  Y  Y  P  S  L  S  G  Y  K  D  E  L  L  W  A  A  I  W  L  Y  K  A  T  D  K  S  H  Y  L  K  Y  A  L  Q  N  A  Q  S  F  G  G  T  T  W  A  I  S  E  F  S  W  D  V  K  Y  A  G  L  Q  L  L  A  A  T  :  L  P  R  Q  D  K  R  E  K  E  D  D  K  I  I  E  E  Y  R  S  K  G  E  Y  Y  L  C  S  C  L  N  Q  N  N  K  T  N  V  H  R  T  P  G  G  L  L  Y  I  R  Q  W  N  N  M  Q  Y  V  S  N  A  A  F  L  L  M  V  Y  S  D  H  L  R  E  T  N  Q  M  A  R  C  E  R  R  S  V  G  P  E  E  I  F  A  F  A  K  S  Q  :  V  D  Y  I  L  G  L  N  P  R  G  V  S  Y  L  V  G  Y  G  P  K  Y  P  Q  R  V  H  H  R  G  A  S  V  V  S  F  K  K  R  K  N  F  I  S  C  T  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0047K21.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69175" stop="68927"/>
                    <exon start="67206" stop="66916"/>
                    <exon start="66782" stop="66642"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFGDKFRGKYDTSVGAAKGYYPSLSGYKDELLWAAIWLYKATDKSHYLKYALQNAQSFGGTTWAISEFSWDVKYAGLQLLAATLPRQDKREKEDDKIIEEYRSKGEYYLCSCLNQNNKTNVHRTPGGLLYIRQWNNMQYVSNAAFLLMVYSDHLRETNQMARCERRSVGPEEIFAFAKSQVDYILGLNPRGVSYLVGYGPKYPQRVHHRGASVVSFKKRKNFISCTQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="78163" PGL_stop="75824"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78163" e_stop="78048"/>
            <exon e_start="76447" e_stop="76298"/>
            <exon e_start="76154" e_stop="75824"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78163" e_stop="78048" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.957">
            <gDNA_intron_boundary i_start="78047" i_stop="76448" i_length="1600"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76447" e_stop="76298" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.943" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76297" i_stop="76155" i_length="143"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76154" e_stop="75824" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78163" stop="78048"/>
              <exon start="76447" stop="76298"/>
              <exon start="76154" stop="75824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78161" stop="78048"/>
              <exon start="76447" stop="76298"/>
              <exon start="76154" stop="75912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78147" stop="78048"/>
              <exon start="76447" stop="76298"/>
              <exon start="76154" stop="75912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78095" stop="78048"/>
              <exon start="76447" stop="76298"/>
              <exon start="76154" stop="75912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78071" stop="78048"/>
              <exon start="76447" stop="76298"/>
              <exon start="76154" stop="75868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221252" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAGAAGAAGAAGAAGAAATATCAGAGAAAAATGTCAGGCGTCACTCAACAGGAGGAAGAGAAGAAGCCGGCCGGCGATCAGGGAGGTCACATTAACCTCAAAGTCAAGAGCCAG : GATGGAAATGAGGTGTTTTTCAGGATCAAGAGAAGCACACAGCTGAAGAAGCTCATGAATGCTTACTGTGATAGGCAATCTGTGGACTTCAACTCTATTGCCTTCTTGTTTGATGGTCGCCGTCTCAGGGCCGAGCAGACTCCTGATGAG : CTCGAGATGGAAGATGGCGATGAAATTGATGCTATGCTGCATCAGACTGGTGGATCTTTGTCTTAGATTTTATATTGGAGGGTTTGGGGTATGGTAAATTAGATTATATGCGGTATATGTTGACCGAACTTTTTAGAATGTGTATGTTAGTCTTTACTTTGGTGGTCTGATAATAGTTGTTTATGGATGGTCACAGAATTTGGATTTTGGATCTTTACTTCTAGTTAATTATCCTTTTATTAACTCTTGGTGTTTGATATATTTGTGCTATGATCGGTTTCTGGGCAATGGTATCTATTAGTATTAATTAGAGATTTGGAGGTCTTGTGAA</gDNA_template>
            <first_frame> Q  R  R  R  R  R  N  I  R  E  K  C  Q  A  S  L  N  R  R  K  R  R  S  R  P  A  I  R  E  V  T  L  T  S  K  S  R  A  R :   M  E  M  R  C  F  S  G  S  R  E  A  H  S  *  R  S  S  *  M  L  T  V  I  G  N  L  W  T  S  T  L  L  P  S  C  L  M  V  A  V  S  G  P  S  R  L  L  M  S :   S  R  W  K  M  A  M  K  L  M  L  C  C  I  R  L  V  D  L  C  L  R  F  Y  I  G  G  F  G  V  W  *  I  R  L  Y  A  V  Y  V  D  R  T  F  *  N  V  Y  V  S  L  Y  F  G  G  L  I  I  V  V  Y  G  W  S  Q  N  L  D  F  G  S  L  L  L  V  N  Y  P  F  I  N  S  W  C  L  I  Y  L  C  Y  D  R  F  L  G  N  G  I  Y  *  Y  *  L  E  I  W  R  S  C  E </first_frame>
            <second_frame>  R  E  E  E  E  E  I  S  E  K  N  V  R  R  H  S  T  G  G  R  E  E  A  G  R  R  S  G  R  S  H  *  P  Q  S  Q  E  P   : G  W  K  *  G  V  F  Q  D  Q  E  K  H  T  A  E  E  A  H  E  C  L  L  *  *  A  I  C  G  L  Q  L  Y  C  L  L  V  *  W  S  P  S  Q  G  R  A  D  S  *  *   : A  R  D  G  R  W  R  *  N  *  C  Y  A  A  S  D  W  W  I  F  V  L  D  F  I  L  E  G  L  G  Y  G  K  L  D  Y  M  R  Y  M  L  T  E  L  F  R  M  C  M  L  V  F  T  L  V  V  *  *  *  L  F  M  D  G  H  R  I  W  I  L  D  L  Y  F  *  L  I  I  L  L  L  T  L  G  V  *  Y  I  C  A  M  I  G  F  W  A  M  V  S  I  S  I  N  *  R  F  G  G  L  V   </second_frame>
            <third_frame>   E  K  K  K  K  K  Y  Q  R  K  M  S  G  V  T  Q  Q  E  E  E  K  K  P  A  G  D  Q  G  G  H  I  N  L  K  V  K  S  Q  :  D  G  N  E  V  F  F  R  I  K  R  S  T  Q  L  K  K  L  M  N  A  Y  C  D  R  Q  S  V  D  F  N  S  I  A  F  L  F  D  G  R  R  L  R  A  E  Q  T  P  D  E  :  L  E  M  E  D  G  D  E  I  D  A  M  L  H  Q  T  G  G  S  L  S  *  I  L  Y  W  R  V  W  G  M  V  N  *  I  I  C  G  I  C  *  P  N  F  L  E  C  V  C  *  S  L  L  W  W  S  D  N  S  C  L  W  M  V  T  E  F  G  F  W  I  F  T  S  S  *  L  S  F  Y  *  L  L  V  F  D  I  F  V  L  *  S  V  S  G  Q  W  Y  L  L  V  L  I  R  D  L  E  V  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0047K21.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78161" stop="78048"/>
                    <exon start="76447" stop="76298"/>
                    <exon start="76154" stop="76089"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKKKKKYQRKMSGVTQQEEEKKPAGDQGGHINLKVKSQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="83896" PGL_stop="82816"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83896" e_stop="83459"/>
            <exon e_start="83423" e_stop="82816"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.920"/>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="83896" e_stop="83459" e_length="438"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="83458" i_stop="83424" i_length="35"/>
          </intron>
          <exon e_serial="2" e_score="0.921">
            <gDNA_exon_boundary e_start="83423" e_stop="82816" e_length="608"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83896" stop="83459"/>
              <exon start="83423" stop="83142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83896" stop="83493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83297" stop="83060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83296" stop="82816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCATGCTATGTGCTTAATTGTATGCTTGCATGGATGTAATTATATAATTGTGATTATATAAGCATGATAAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTTTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGGGATGGATGCTGCCTTGGTAAGAAAGAAGGCGTGATGAATTGATAGAAAGAGATTAGGGGATCGGGTGTCACGAACCGACACATAGTATTAGGGGATCGGGTGTCACAAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACAC : GTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAATCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTATGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGAGATCAGAGTGTCACGCACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATAAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGCATTGAGGCTTGAGTCCTCATTTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTATGATATTACTTGATATATATATATTGATTTTTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCAACTCAACCGCAACTCTAGCCAGTCTTCATTATTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  W  M  *  L  Y  N  C  D  Y  I  S  M  I  K  L  L  N  P  K  S  C  K  I  L  I  F  L  L  I  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  W  D  G  C  C  L  G  K  K  E  G  V  M  N  *  *  K  E  I  R  G  S  G  V  T  N  R  H  I  V  L  G  D  R  V  S  Q  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  :  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  S  T  R  R  I  R  G  S  G  V  T  N  R  H  V  V  L  W  D  R  V  S  R  T  D  T  *  I  *  E  I  R  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  K  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  I  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  D  L  *  Y  Y  L  I  Y  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  *  L  W  S  A  A  N  V  P  S  S  S  T  Q  P  Q  L  *  P  V  F  I  I  P  D  I  R  V  S  *  C  F  *  L  G   </first_frame>
            <second_frame>  S  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  H  A  M  C  L  I  V  C  L  H  G  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  A  K  S  *  S  F  C  *  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  G  M  D  A  A  L  V  R  K  K  A  *  *  I  D  R  K  R  L  G  D  R  V  S  R  T  D  T  *  Y  *  G  I  G  C  H  K  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T :   *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  Y  Y  G  I  G  C  H  E  P  T  R  R  F  R  R  S  E  C  H  A  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  I  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  A  L  R  L  E  S  S  F  V  N  L  T  V  I  V  N  D  I  V  L  A  V  A  T  C  *  V  S  *  L  I  Y  D  I  T  *  Y  I  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  N  C  G  V  Q  Q  T  C  R  H  L  Q  L  N  R  N  S  S  Q  S  S  L  F  R  I  S  G  *  A  N  A  S  S  L  D  </second_frame>
            <third_frame>   V  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  M  L  C  A  *  L  Y  A  C  M  D  V  I  I  *  L  *  L  Y  K  H  D  K  V  I  E  S  Q  I  L  Q  N  P  N  L  F  V  N  N  E  A  L  V  *  K  K  A  *  *  T  K  I  M  G  W  M  L  P  W  *  E  R  R  R  D  E  L  I  E  R  D  *  G  I  G  C  H  E  P  T  H  S  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T   : R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  I  D  T  *  N  *  G  I  G  C  H  E  P  T  R  S  I  M  G  S  G  V  T  N  R  H  V  D  L  G  D  Q  S  V  T  H  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  I  I  P  K  *  V  W  H  *  G  L  S  P  H  L  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  M  I  L  L  D  I  Y  I  L  I  F  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  I  V  E  C  S  K  R  A  V  I  F  N  S  T  A  T  L  A  S  L  H  Y  S  G  Y  Q  G  E  L  M  L  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0047K21.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83034" stop="82816"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMILLDIYILIFILSWPMISTQYPCFVLTPTFMFSSCLIVECSKRAVIFNSTATLASLHYSGYQGELMLLAWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="89418" PGL_stop="90747"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89418" e_stop="90747"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="89418" e_stop="90747" e_length="1330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89418" stop="89667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89444" stop="89668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89569" stop="90115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89569" stop="90084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89610" stop="90147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89649" stop="90458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89650" stop="90349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89650" stop="90297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89650" stop="90156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89685" stop="90097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89686" stop="90286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89689" stop="90243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89689" stop="90188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89690" stop="90543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89698" stop="90126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89778" stop="90476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89823" stop="90249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89913" stop="90470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90178" stop="90747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90344" stop="90655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282171" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGAAGAAGAGAGAGAGAGTCTCTCTCTTTCTTTCTCTCTATTTTTTCTATCAACCAAACAGACCACAAACAGTAGAGAGAGAAACTCAGATTTATAGAGAGAGAAAGTGTGAAGCTTTTGCAGATAAGAATCCTCATCTCTGCTTCCATGGCTTTAACGTTTCATATTTTCCCCTAATTTCTCTTCGGATCTCAAAAAAAAAAAAAAAATTAAAAAAAAAATCAAACAAAAAAACTTTTTTTAAAAAAATCTTCGGTCATGCGGAGAAGCAGAGCAGCCGCTGCGGCGAGACAAGTTCCGGCGACGGAAGTTCCGGTACCGGCACCGGTGGCCGGAGAACACAACGGATCTGGAGGATCTAAGGAGATAAGGTTCCGTGGAGTTCGAAAGAGACCATGGGGAAGATTTGCAGCAGAGATTAGAGATCCATGGAAGAAAACTAGGGTTTGGTTGGGTACTTTTGATTCTGCTGAAGATGCTGCTCGTGCTTATGATGCAGCAGCTCGTACTCTTCGTGGACCTAAAGCTAAAACTAATTTCCCTTTACCTTCTTCTCATCATCTACCTCCATATCCTCACCATCATCAGTTCAACCAAAGCATCAACCCTAACGATCCCTTTGTCGATTCCCGGTTATACTCTCAGGACCACCCATTAGTTTCACAGAGACCTACTTCAAGCAGCATGAGTAGTACGGTGGAGTCCTTCAGTGGACCACGGCAGCCGCCGCGGCAGCAGACGGCAGCTTCCGTGCCTTCCAGAAAGTATCCCCGGTCACCGCCTGTTGTCCCGGACGATTGCCATAGCGACTGTGACTCATCGTCTTCTGTCGTTGAAGACGGTGAATGTGATAACGACAACATCGCTTCTTCCTCTTTCAGAAAGCCGTTGCCTTTCGATCTAAACTTACCGGCACCGATGGATGACTTCAGCGCCGACGCATATGCCGATGATCTTCACTGCACAGCACTATGTCTTTGACGAAATGATGGTTTGTGACCCACCTGTCATTTGATACCACTGCTTACCTAGTTTTTCTTTCTTTTTTGGGTGACCGGAAAAAAAAACAAAAAAAAAGAAGAGGAAGGAGCCATAGAAGATAAGCTAAACTATGTCTGCTATGAGTCAATCTGTTGTTGTAAGAGTATTCACTTGTTTAATTTAATTCTCATATTTTATATCATGGGATTTCTTGATAGGTGGATGGATCAGTGTATGTCAAATTTGTTCTGATTGTGTATCTTAAAACTATATGTGACTTCTCAGCTGAAGGTGCCCTTTGTTGTTCGAAGTCGAATTTATATATATTATCGCGGAAGATTAGAGG</gDNA_template>
            <first_frame> K  R  R  R  E  R  E  S  L  S  F  F  L  S  I  F  S  I  N  Q  T  D  H  K  Q  *  R  E  K  L  R  F  I  E  R  E  S  V  K  L  L  Q  I  R  I  L  I  S  A  S  M  A  L  T  F  H  I  F  P  *  F  L  F  G  S  Q  K  K  K  K  N  *  K  K  N  Q  T  K  K  L  F  L  K  K  S  S  V  M  R  R  S  R  A  A  A  A  A  R  Q  V  P  A  T  E  V  P  V  P  A  P  V  A  G  E  H  N  G  S  G  G  S  K  E  I  R  F  R  G  V  R  K  R  P  W  G  R  F  A  A  E  I  R  D  P  W  K  K  T  R  V  W  L  G  T  F  D  S  A  E  D  A  A  R  A  Y  D  A  A  A  R  T  L  R  G  P  K  A  K  T  N  F  P  L  P  S  S  H  H  L  P  P  Y  P  H  H  H  Q  F  N  Q  S  I  N  P  N  D  P  F  V  D  S  R  L  Y  S  Q  D  H  P  L  V  S  Q  R  P  T  S  S  S  M  S  S  T  V  E  S  F  S  G  P  R  Q  P  P  R  Q  Q  T  A  A  S  V  P  S  R  K  Y  P  R  S  P  P  V  V  P  D  D  C  H  S  D  C  D  S  S  S  S  V  V  E  D  G  E  C  D  N  D  N  I  A  S  S  S  F  R  K  P  L  P  F  D  L  N  L  P  A  P  M  D  D  F  S  A  D  A  Y  A  D  D  L  H  C  T  A  L  C  L  *  R  N  D  G  L  *  P  T  C  H  L  I  P  L  L  T  *  F  F  F  L  F  W  V  T  G  K  K  N  K  K  K  E  E  E  G  A  I  E  D  K  L  N  Y  V  C  Y  E  S  I  C  C  C  K  S  I  H  L  F  N  L  I  L  I  F  Y  I  M  G  F  L  D  R  W  M  D  Q  C  M  S  N  L  F  *  L  C  I  L  K  L  Y  V  T  S  Q  L  K  V  P  F  V  V  R  S  R  I  Y  I  Y  Y  R  G  R  L  E  </first_frame>
            <second_frame>  K  E  E  E  R  E  S  L  S  L  S  F  S  L  F  F  L  S  T  K  Q  T  T  N  S  R  E  R  N  S  D  L  *  R  E  K  V  *  S  F  C  R  *  E  S  S  S  L  L  P  W  L  *  R  F  I  F  S  P  N  F  S  S  D  L  K  K  K  K  K  I  K  K  K  I  K  Q  K  N  F  F  *  K  N  L  R  S  C  G  E  A  E  Q  P  L  R  R  D  K  F  R  R  R  K  F  R  Y  R  H  R  W  P  E  N  T  T  D  L  E  D  L  R  R  *  G  S  V  E  F  E  R  D  H  G  E  D  L  Q  Q  R  L  E  I  H  G  R  K  L  G  F  G  W  V  L  L  I  L  L  K  M  L  L  V  L  M  M  Q  Q  L  V  L  F  V  D  L  K  L  K  L  I  S  L  Y  L  L  L  I  I  Y  L  H  I  L  T  I  I  S  S  T  K  A  S  T  L  T  I  P  L  S  I  P  G  Y  T  L  R  T  T  H  *  F  H  R  D  L  L  Q  A  A  *  V  V  R  W  S  P  S  V  D  H  G  S  R  R  G  S  R  R  Q  L  P  C  L  P  E  S  I  P  G  H  R  L  L  S  R  T  I  A  I  A  T  V  T  H  R  L  L  S  L  K  T  V  N  V  I  T  T  T  S  L  L  P  L  S  E  S  R  C  L  S  I  *  T  Y  R  H  R  W  M  T  S  A  P  T  H  M  P  M  I  F  T  A  Q  H  Y  V  F  D  E  M  M  V  C  D  P  P  V  I  *  Y  H  C  L  P  S  F  S  F  F  F  G  *  P  E  K  K  T  K  K  K  K  R  K  E  P  *  K  I  S  *  T  M  S  A  M  S  Q  S  V  V  V  R  V  F  T  C  L  I  *  F  S  Y  F  I  S  W  D  F  L  I  G  G  W  I  S  V  C  Q  I  C  S  D  C  V  S  *  N  Y  M  *  L  L  S  *  R  C  P  L  L  F  E  V  E  F  I  Y  I  I  A  E  D  *  R </second_frame>
            <third_frame>   K  K  K  R  E  R  V  S  L  F  L  S  L  Y  F  F  Y  Q  P  N  R  P  Q  T  V  E  R  E  T  Q  I  Y  R  E  R  K  C  E  A  F  A  D  K  N  P  H  L  C  F  H  G  F  N  V  S  Y  F  P  L  I  S  L  R  I  S  K  K  K  K  K  L  K  K  K  S  N  K  K  T  F  F  K  K  I  F  G  H  A  E  K  Q  S  S  R  C  G  E  T  S  S  G  D  G  S  S  G  T  G  T  G  G  R  R  T  Q  R  I  W  R  I  *  G  D  K  V  P  W  S  S  K  E  T  M  G  K  I  C  S  R  D  *  R  S  M  E  E  N  *  G  L  V  G  Y  F  *  F  C  *  R  C  C  S  C  L  *  C  S  S  S  Y  S  S  W  T  *  S  *  N  *  F  P  F  T  F  F  S  S  S  T  S  I  S  S  P  S  S  V  Q  P  K  H  Q  P  *  R  S  L  C  R  F  P  V  I  L  S  G  P  P  I  S  F  T  E  T  Y  F  K  Q  H  E  *  Y  G  G  V  L  Q  W  T  T  A  A  A  A  A  A  D  G  S  F  R  A  F  Q  K  V  S  P  V  T  A  C  C  P  G  R  L  P  *  R  L  *  L  I  V  F  C  R  *  R  R  *  M  *  *  R  Q  H  R  F  F  L  F  Q  K  A  V  A  F  R  S  K  L  T  G  T  D  G  *  L  Q  R  R  R  I  C  R  *  S  S  L  H  S  T  M  S  L  T  K  *  W  F  V  T  H  L  S  F  D  T  T  A  Y  L  V  F  L  S  F  L  G  D  R  K  K  K  Q  K  K  R  R  G  R  S  H  R  R  *  A  K  L  C  L  L  *  V  N  L  L  L  *  E  Y  S  L  V  *  F  N  S  H  I  L  Y  H  G  I  S  *  *  V  D  G  S  V  Y  V  K  F  V  L  I  V  Y  L  K  T  I  C  D  F  S  A  E  G  A  L  C  C  S  K  S  N  L  Y  I  L  S  R  K  I  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0047K21.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89634" stop="90401"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKNQTKKLFLKKSSVMRRSRAAAAARQVPATEVPVPAPVAGEHNGSGGSKEIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPLPSSHHLPPYPHHHQFNQSINPNDPFVDSRLYSQDHPLVSQRPTSSSMSSTVESFSGPRQPPRQQTAASVPSRKYPRSPPVVPDDCHSDCDSSSSVVEDGECDNDNIASSSFRKPLPFDLNLPAPMDDFSADAYADDLHCTALCL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0047K21.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90453" stop="90653"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFLFWVTGKKNKKKEEEGAIEDKLNYVCYESICCCKSIHLFNLILIFYIMGFLDRWMDQCMSNLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="90489" PGL_stop="89973"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90489" e_stop="89973"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="90489" e_stop="89973" e_length="517"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90489" stop="89973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287248" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTTTTTTTTCCGGTCACCCAAAAAAGAAAGAAAAACTAGGTAAGCAGTGGTATCAAATGACAGGTGGGTCACAAACCATCATTTCGTCAAAGACATAGTGCTGTGCAGTGAAGATCATCGGCATATGCGTCGGCGCTGAAGTCATCCATCGGTGCCGGTAAGTTTAGATCGAAAGGCAACGGCTTTCTGAAAGAGGAAGAAGCGATGTTGTCGTTATCACATTCACCGTCTTCAACGACAGAAGACGATGAGTCACAGTCGCTATGGCAATCGTCCGGGACAACAGGCGGTGACCGGGGATACTTTCTGGAAGGCACGGAAGCTGCCGTCTGCTGCCGCGGCGGCTGCCGTGGTCCACTGAAGGACTCCACCGTACTACTCATGCTGCTTGAAGTAGGTCTCTGTGAAACTAATGGGTGGTCCTGAGAGTATAACCGGGAATCGACAAAGGGATCGTTAGGGTTGATGCTTTGGTTGAACTGATGATGGTGAGGATATGGAGGTAGATGATGAGA</gDNA_template>
            <first_frame> C  F  F  F  R  S  P  K  K  E  R  K  T  R  *  A  V  V  S  N  D  R  W  V  T  N  H  H  F  V  K  D  I  V  L  C  S  E  D  H  R  H  M  R  R  R  *  S  H  P  S  V  P  V  S  L  D  R  K  A  T  A  F  *  K  R  K  K  R  C  C  R  Y  H  I  H  R  L  Q  R  Q  K  T  M  S  H  S  R  Y  G  N  R  P  G  Q  Q  A  V  T  G  D  T  F  W  K  A  R  K  L  P  S  A  A  A  A  A  A  V  V  H  *  R  T  P  P  Y  Y  S  C  C  L  K  *  V  S  V  K  L  M  G  G  P  E  S  I  T  G  N  R  Q  R  D  R  *  G  *  C  F  G  *  T  D  D  G  E  D  M  E  V  D  D  E  </first_frame>
            <second_frame>  V  F  F  S  G  H  P  K  K  K  E  K  L  G  K  Q  W  Y  Q  M  T  G  G  S  Q  T  I  I  S  S  K  T  *  C  C  A  V  K  I  I  G  I  C  V  G  A  E  V  I  H  R  C  R  *  V  *  I  E  R  Q  R  L  S  E  R  G  R  S  D  V  V  V  I  T  F  T  V  F  N  D  R  R  R  *  V  T  V  A  M  A  I  V  R  D  N  R  R  *  P  G  I  L  S  G  R  H  G  S  C  R  L  L  P  R  R  L  P  W  S  T  E  G  L  H  R  T  T  H  A  A  *  S  R  S  L  *  N  *  W  V  V  L  R  V  *  P  G  I  D  K  G  I  V  R  V  D  A  L  V  E  L  M  M  V  R  I  W  R  *  M  M  R </second_frame>
            <third_frame>   F  F  F  P  V  T  Q  K  R  K  K  N  *  V  S  S  G  I  K  *  Q  V  G  H  K  P  S  F  R  Q  R  H  S  A  V  Q  *  R  S  S  A  Y  A  S  A  L  K  S  S  I  G  A  G  K  F  R  S  K  G  N  G  F  L  K  E  E  E  A  M  L  S  L  S  H  S  P  S  S  T  T  E  D  D  E  S  Q  S  L  W  Q  S  S  G  T  T  G  G  D  R  G  Y  F  L  E  G  T  E  A  A  V  C  C  R  G  G  C  R  G  P  L  K  D  S  T  V  L  L  M  L  L  E  V  G  L  C  E  T  N  G  W  S  *  E  Y  N  R  E  S  T  K  G  S  L  G  L  M  L  W  L  N  *  *  W  *  G  Y  G  G  R  *  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0047K21.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90376" stop="90062"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSSAYASALKSSIGAGKFRSKGNGFLKEEEAMLSLSHSPSSTTEDDESQSLWQSSGTTGGDRGYFLEGTEAAVCCRGGCRGPLKDSTVLLMLLEVGLCETNGWS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="97278" PGL_stop="97904"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97278" e_stop="97904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="97278" e_stop="97904" e_length="627"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97278" stop="97751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97427" stop="97904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304725" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCATCAAACAAAAAATAAATTTTCTGCAATTTCATCAAACACCCACAAAAAAACAAAAAAAAAAATTAAACTTTTTCCATTTTTATCGAACACCCAGAAAAAAAGATTGAAACTTTTTCCATTTTTCATCAAATACCCAGAAAAACGATTTAAACTTTCTACAGTTTCATCAAAAACCCAGAAAAAAATTTGATTTTTTTCAATGGGGGATGAAAGTAAAGGCGAAAGCCAAAGCCAATCTTTACTGAACAAGAAGAGTATATTATATGCACGTAGTAAATCACATGCTTACGATGAATTGCGTGTATTTAGGAGATGGTTGAAGTGGATGTGTGTGGATCAATCTGATACATTATCTACTGTTTTGTCTTGGTTTGTTTTTATAATATTTGTAATTGTTGTTCCATGTTTGTCCCATTTCTTATTGGCTTGTGCAGATTGTGATGCTAATCATGATAGACCTTATGATAATGTTGTTCAGTTGTCTCTTAGTGGTGTTGCTGCTCTCTCTTTTATTTGTCTTACTGGATTTGTGAAGAAATTTGGGCTTCGTAGGTTCTTGTTTCTTGATAAGCTTTGTGATGAAAGTGAGACTGTAAGGAAATGCTATATGGAAGAGCTCAAT</gDNA_template>
            <first_frame> F  H  Q  T  K  N  K  F  S  A  I  S  S  N  T  H  K  K  T  K  K  K  I  K  L  F  P  F  L  S  N  T  Q  K  K  R  L  K  L  F  P  F  F  I  K  Y  P  E  K  R  F  K  L  S  T  V  S  S  K  T  Q  K  K  I  *  F  F  S  M  G  D  E  S  K  G  E  S  Q  S  Q  S  L  L  N  K  K  S  I  L  Y  A  R  S  K  S  H  A  Y  D  E  L  R  V  F  R  R  W  L  K  W  M  C  V  D  Q  S  D  T  L  S  T  V  L  S  W  F  V  F  I  I  F  V  I  V  V  P  C  L  S  H  F  L  L  A  C  A  D  C  D  A  N  H  D  R  P  Y  D  N  V  V  Q  L  S  L  S  G  V  A  A  L  S  F  I  C  L  T  G  F  V  K  K  F  G  L  R  R  F  L  F  L  D  K  L  C  D  E  S  E  T  V  R  K  C  Y  M  E  E  L  N </first_frame>
            <second_frame>  F  I  K  Q  K  I  N  F  L  Q  F  H  Q  T  P  T  K  K  Q  K  K  K  L  N  F  F  H  F  Y  R  T  P  R  K  K  D  *  N  F  F  H  F  S  S  N  T  Q  K  N  D  L  N  F  L  Q  F  H  Q  K  P  R  K  K  F  D  F  F  Q  W  G  M  K  V  K  A  K  A  K  A  N  L  Y  *  T  R  R  V  Y  Y  M  H  V  V  N  H  M  L  T  M  N  C  V  Y  L  G  D  G  *  S  G  C  V  W  I  N  L  I  H  Y  L  L  F  C  L  G  L  F  L  *  Y  L  *  L  L  F  H  V  C  P  I  S  Y  W  L  V  Q  I  V  M  L  I  M  I  D  L  M  I  M  L  F  S  C  L  L  V  V  L  L  L  S  L  L  F  V  L  L  D  L  *  R  N  L  G  F  V  G  S  C  F  L  I  S  F  V  M  K  V  R  L  *  G  N  A  I  W  K  S  S   </second_frame>
            <third_frame>   S  S  N  K  K  *  I  F  C  N  F  I  K  H  P  Q  K  N  K  K  K  N  *  T  F  S  I  F  I  E  H  P  E  K  K  I  E  T  F  S  I  F  H  Q  I  P  R  K  T  I  *  T  F  Y  S  F  I  K  N  P  E  K  N  L  I  F  F  N  G  G  *  K  *  R  R  K  P  K  P  I  F  T  E  Q  E  E  Y  I  I  C  T  *  *  I  T  C  L  R  *  I  A  C  I  *  E  M  V  E  V  D  V  C  G  S  I  *  Y  I  I  Y  C  F  V  L  V  C  F  Y  N  I  C  N  C  C  S  M  F  V  P  F  L  I  G  L  C  R  L  *  C  *  S  *  *  T  L  *  *  C  C  S  V  V  S  *  W  C  C  C  S  L  F  Y  L  S  Y  W  I  C  E  E  I  W  A  S  *  V  L  V  S  *  *  A  L  *  *  K  *  D  C  K  E  M  L  Y  G  R  A  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0047K21.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97473" stop="97904"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSMGDESKGESQSQSLLNKKSILYARSKSHAYDELRVFRRWLKWMCVDQSDTLSTVLSWFVFIIFVIVVPCLSHFLLACADCDANHDRPYDNVVQLSLSGVAALSFICLTGFVKKFGLRRFLFLDKLCDESETVRKCYMEELN</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0047K21.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97278" stop="97472"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHQTKNKFSAISSNTHKKTKKKIKLFPFLSNTQKKRLKLFPFFIKYPEKRFKLSTVSSKTQKKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 196 chains have been computed
$ 
$ memory statistics:
$ 548376 bytes spliced alignments in total
$ 97 spliced alignments have been stored
$ 5653 bytes was the average size of a spliced alignment
$ 28816 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1600 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 243 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:51:40
-->
