<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 05:34:29"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318581" ref_strand="+" ref_description="SGN-E318581 [cTOB-9-O3]">
      <seq>gccaaaatcttcttcatatctccatttttattcaataatggattcaattaagccatcctcatcacaattagtattcacggagagaaggcaaaatgcagagctaattgctccagcaaagccaactccacgtgaaactaaatttctctcagacattgatgatcaagaaagtcttcgatttcaaatccccgttattaatttttatcgtaaagattcggatatttctacgggaggaaatcatgaccctgtaaaagtgattaaaaaggcaatagctgaaacacttgatttttactatccgtttgctggtcggctccgggaaggaaatggccggaaactgatggtggattgtaccggggaaggagttatgttcgtggaagcggatgctgatgtgacccttgaacaatttggagatgaacttcagcctccatttccgagtttggaagaactcctttatgatgttcctggctctgctgaagttcttaattctcctctgcttcttattcaggtcactcgtctcaagtgtggaggtttcattttcgcagtgcgattaaaccacacaatgagtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4048" stop="5336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4347" g_stop="4848" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4849" i_stop="4973" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4974" g_stop="5036" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="565" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E318581" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4347" e_stop="4848"/>
          <exon e_start="4974" e_stop="5036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAATCTTCTTCATATCTCCATTTTTATTCAATAATGGATTCAATTAAGCCATCCTCATCACAATTAGTATTCACGGTGAGAAGGCAAAATGCAGAGCTAATTGCTCCAGCAAAGCCAACTCCACGTGAAACTAAATTTCTCTCAGACATTGATGATCAAGAAGGTCTTCGATTTCAAATCCCCGTTATTAATTTTTATCGTAAAGATTCGGATATTTCTACGGGAGGAAATCATGACCCTGTAAAAGTGATTAAAAAGGCAATAGCTGAAACACTTGTTTTTTACTATCCGTTTGCTGGTCGGCTCCGGGAAGGAAATGGCCGGAAACTGATGGTGGATTGTACCGGGGAAGGAGTTATGTTCGTGGAAGCGGATGCTGATGTGACCCTTGAACAATTTGGAGATGAACTTCAGCCTCCATTTCCGTGTTTGGAAGAACTCCTTTATGATGTTCCTGGCTCTGCTGAAGTTCTTAATTCTCCTCTGCTTCTTATTCAGGTACTAAGAATTTTGAATCCATCAAAATTTAAATAGTGAATCCATCTGCCAATAGTTAAAAGTTTTTGTTAACTTACAATACTTGAATGTTTAATTAACGAATATATATATATATATATATGTAGGTCACTCGTCTCAAGTGTGGTGGTTTCATTTTCGCAGTGCGATTAAACCACACAATGAGTGAT</genome_strand>
        <mrna_strand>GCCAAAATCTTCTTCATATCTCCATTTTTATTCAATAATGGATTCAATTAAGCCATCCTCATCACAATTAGTATTCACGGAGAGAAGGCAAAATGCAGAGCTAATTGCTCCAGCAAAGCCAACTCCACGTGAAACTAAATTTCTCTCAGACATTGATGATCAAGAAAGTCTTCGATTTCAAATCCCCGTTATTAATTTTTATCGTAAAGATTCGGATATTTCTACGGGAGGAAATCATGACCCTGTAAAAGTGATTAAAAAGGCAATAGCTGAAACACTTGATTTTTACTATCCGTTTGCTGGTCGGCTCCGGGAAGGAAATGGCCGGAAACTGATGGTGGATTGTACCGGGGAAGGAGTTATGTTCGTGGAAGCGGATGCTGATGTGACCCTTGAACAATTTGGAGATGAACTTCAGCCTCCATTTCCGAGTTTGGAAGAACTCCTTTATGATGTTCCTGGCTCTGCTGAAGTTCTTAATTCTCCTCTGCTTCTTATTCAG.............................................................................................................................GTCACTCGTCTCAAGTGTGGAGGTTTCATTTTCGCAGTGCGATTAAACCACACAATGAGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727863" ref_strand="+" ref_description="SGN-E727863 [LA15DH11]">
      <seq>caaaatcttcttcatatctccatttttattcaataatggattcaattaagccatcctcatcacaattagtattcacggtgagaaggcaaaatgcagagctaattgctccagcaaagccaactccacgtgaaactaaatttctctcagacattgatgatcaagaaggtcttcgatttcaaatccccgttattaatttttatcgtaaagattcggatatttctacgggaggaaatcatgaccctgtaaaagtgattaaaaaggcaatagctgaaacacttgatttttactatccgtttgctggtcggctccgggaaggaaatggccggaaactgatggtggattgtaccggggaaggagttatgttcgtggaagcggatgctgatgtgacccttgaacaatttggagatgaacttcagcctccatttccgtgtttggaagaactcctttatgatgttcctggctctgctgaagttcttaattctcctctgcttcttattcaggtcactcgtctcaagtgtggtggtttcattttcgcagtgcgattaaaccacacaatgagtgatgcagccggtcttgtccaattcatgactgctgttggtgaaatggcacgcggggcctctgttccgtctacactccctgtctggtccagagaattgctcaactcccgtgatccacctcgagtgacttgcacccaccatgaatacgatgaagttcctggatacaagggtacaattatcccattagatgatatggtacacaaatcattcttttttggcccttctcaagtctcagctcttcgtcgattcatccctcctcatttgcgcaaatcttccacttttgaattgctcacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4049" stop="5626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4349" g_stop="4848" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4849" i_stop="4973" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4974" g_stop="5326" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="853" r_length="353" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E727863" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4349" e_stop="4848"/>
          <exon e_start="4974" e_stop="5326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCTTCTTCATATCTCCATTTTTATTCAATAATGGATTCAATTAAGCCATCCTCATCACAATTAGTATTCACGGTGAGAAGGCAAAATGCAGAGCTAATTGCTCCAGCAAAGCCAACTCCACGTGAAACTAAATTTCTCTCAGACATTGATGATCAAGAAGGTCTTCGATTTCAAATCCCCGTTATTAATTTTTATCGTAAAGATTCGGATATTTCTACGGGAGGAAATCATGACCCTGTAAAAGTGATTAAAAAGGCAATAGCTGAAACACTTGTTTTTTACTATCCGTTTGCTGGTCGGCTCCGGGAAGGAAATGGCCGGAAACTGATGGTGGATTGTACCGGGGAAGGAGTTATGTTCGTGGAAGCGGATGCTGATGTGACCCTTGAACAATTTGGAGATGAACTTCAGCCTCCATTTCCGTGTTTGGAAGAACTCCTTTATGATGTTCCTGGCTCTGCTGAAGTTCTTAATTCTCCTCTGCTTCTTATTCAGGTACTAAGAATTTTGAATCCATCAAAATTTAAATAGTGAATCCATCTGCCAATAGTTAAAAGTTTTTGTTAACTTACAATACTTGAATGTTTAATTAACGAATATATATATATATATATATGTAGGTCACTCGTCTCAAGTGTGGTGGTTTCATTTTCGCAGTGCGATTAAACCACACAATGAGTGATGCAGCCGGTCTTGTCCAATTCATGACTGCTGTTGGTGAAATGGCACGCGGGGCCTCTGTTCCGTCTACACTCCCTGTCTGGTCCAGAGAATTGCTCAACTCCCGTGATCCACCTCGAGTGACTTGCACCCACCATGAATACGATGAAGTTCCT-GATACAAAGGGTACAATTATCCCATTAGATGATATGGTACACAAATCATTCTTTTTTGGCCCTTCTCAAGTCTCAGCTCTTCGTCGATTCATCCCTCCTCATTTGCGCAAATCTTCCACTTTTGAATTGCTCACATC</genome_strand>
        <mrna_strand>CAAAATCTTCTTCATATCTCCATTTTTATTCAATAATGGATTCAATTAAGCCATCCTCATCACAATTAGTATTCACGGTGAGAAGGCAAAATGCAGAGCTAATTGCTCCAGCAAAGCCAACTCCACGTGAAACTAAATTTCTCTCAGACATTGATGATCAAGAAGGTCTTCGATTTCAAATCCCCGTTATTAATTTTTATCGTAAAGATTCGGATATTTCTACGGGAGGAAATCATGACCCTGTAAAAGTGATTAAAAAGGCAATAGCTGAAACACTTGATTTTTACTATCCGTTTGCTGGTCGGCTCCGGGAAGGAAATGGCCGGAAACTGATGGTGGATTGTACCGGGGAAGGAGTTATGTTCGTGGAAGCGGATGCTGATGTGACCCTTGAACAATTTGGAGATGAACTTCAGCCTCCATTTCCGTGTTTGGAAGAACTCCTTTATGATGTTCCTGGCTCTGCTGAAGTTCTTAATTCTCCTCTGCTTCTTATTCAG.............................................................................................................................GTCACTCGTCTCAAGTGTGGTGGTTTCATTTTCGCAGTGCGATTAAACCACACAATGAGTGATGCAGCCGGTCTTGTCCAATTCATGACTGCTGTTGGTGAAATGGCACGCGGGGCCTCTGTTCCGTCTACACTCCCTGTCTGGTCCAGAGAATTGCTCAACTCCCGTGATCCACCTCGAGTGACTTGCACCCACCATGAATACGATGAAGTTCCTGGATAC-AAGGGTACAATTATCCCATTAGATGATATGGTACACAAATCATTCTTTTTTGGCCCTTCTCAAGTCTCAGCTCTTCGTCGATTCATCCCTCCTCATTTGCGCAAATCTTCCACTTTTGAATTGCTCACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211969" ref_strand="+" ref_description="SGN-E211969 [cLEC-66-D1]">
      <seq>caaaatcttcttcatatctccatttttattcaataatggattcaattaagccatcctcatcacaattagtattcacggtgagaaggcaaaatgcagagctaattgctccagcaaagccaactccacgtgaaactaaatttctctcagacattgatgatcaagaaggtcttcgatttcaaatccccgttattaatttttatcgtaaagattcggatatttctacgggaggaaatcatgaccctgtaaaagtgattaaaaaggcaatagctgaaacacttgatttttactatccgtttgctggtcggctccgggaaggaaatggccggaaactgatggtggattgtaccggggaaggagttatgttcgtggaagcggatgctgatgtgacccttgaacaatttggagatgaacttcagcctccatttccgtgtttggaagaactcctttatgatgttcctggctctgctgaagttcttaattctcctctgcttcttattcaggtcactcgtctcaagtgtggtggtttcattttcgcagtgcgattaaaccacacaatgagtgatgcagccggtcttgtccaattcatgactgctgntggtgaaatggcacgcggggcctctgttccgtctacactccctgtctgggtcagagaattgctcaactccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4049" stop="5439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4349" g_stop="4848" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4849" i_stop="4973" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4974" g_stop="5139" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="666" r_length="166" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E211969" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4349" e_stop="4848"/>
          <exon e_start="4974" e_stop="5139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCTTCTTCATATCTCCATTTTTATTCAATAATGGATTCAATTAAGCCATCCTCATCACAATTAGTATTCACGGTGAGAAGGCAAAATGCAGAGCTAATTGCTCCAGCAAAGCCAACTCCACGTGAAACTAAATTTCTCTCAGACATTGATGATCAAGAAGGTCTTCGATTTCAAATCCCCGTTATTAATTTTTATCGTAAAGATTCGGATATTTCTACGGGAGGAAATCATGACCCTGTAAAAGTGATTAAAAAGGCAATAGCTGAAACACTTGTTTTTTACTATCCGTTTGCTGGTCGGCTCCGGGAAGGAAATGGCCGGAAACTGATGGTGGATTGTACCGGGGAAGGAGTTATGTTCGTGGAAGCGGATGCTGATGTGACCCTTGAACAATTTGGAGATGAACTTCAGCCTCCATTTCCGTGTTTGGAAGAACTCCTTTATGATGTTCCTGGCTCTGCTGAAGTTCTTAATTCTCCTCTGCTTCTTATTCAGGTACTAAGAATTTTGAATCCATCAAAATTTAAATAGTGAATCCATCTGCCAATAGTTAAAAGTTTTTGTTAACTTACAATACTTGAATGTTTAATTAACGAATATATATATATATATATATGTAGGTCACTCGTCTCAAGTGTGGTGGTTTCATTTTCGCAGTGCGATTAAACCACACAATGAGTGATGCAGCCGGTCTTGTCCAATTCATGACTGCTGTTGGTGAAATGGCACGCGGGGCCTCTGTTCCGTCTACACTCCCTGTCTGGTCCAGAGAATTGCTCAACTCCC</genome_strand>
        <mrna_strand>CAAAATCTTCTTCATATCTCCATTTTTATTCAATAATGGATTCAATTAAGCCATCCTCATCACAATTAGTATTCACGGTGAGAAGGCAAAATGCAGAGCTAATTGCTCCAGCAAAGCCAACTCCACGTGAAACTAAATTTCTCTCAGACATTGATGATCAAGAAGGTCTTCGATTTCAAATCCCCGTTATTAATTTTTATCGTAAAGATTCGGATATTTCTACGGGAGGAAATCATGACCCTGTAAAAGTGATTAAAAAGGCAATAGCTGAAACACTTGATTTTTACTATCCGTTTGCTGGTCGGCTCCGGGAAGGAAATGGCCGGAAACTGATGGTGGATTGTACCGGGGAAGGAGTTATGTTCGTGGAAGCGGATGCTGATGTGACCCTTGAACAATTTGGAGATGAACTTCAGCCTCCATTTCCGTGTTTGGAAGAACTCCTTTATGATGTTCCTGGCTCTGCTGAAGTTCTTAATTCTCCTCTGCTTCTTATTCAG.............................................................................................................................GTCACTCGTCTCAAGTGTGGTGGTTTCATTTTCGCAGTGCGATTAAACCACACAATGAGTGATGCAGCCGGTCTTGTCCAATTCATGACTGCTGNTGGTGAAATGGCACGCGGGGCCTCTGTTCCGTCTACACTCCCTGTCTGGGTCAGAGAATTGCTCAACTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324995" ref_strand="+" ref_description="SGN-E324995 [cTOC-11-L16]">
      <seq>caaaatcttcttcatatctccatttttattcaataatggattcaattaagccatcctcatcacaattagtattcacggtgagaaggcaaaatgcagagctaattgctccagcaaagccaactccacgtgaaactaaatttctctcagacattgatgatcaagaaggtcttcgatttcaaatccccgttattaatttttatcgtaaagattcggatatttctacgggaggaaatcatgaccctgtaaaagtgattaaaaaggcaatagctgaaacacttgatttttactatccgtttgctggtcggctccgggaaggaaatggccggaaactgatggtggattgtaccggggaaggagttatgttcgtggaagcggatgctgatgtgacccttgaacaatttggagatgaacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4049" stop="5063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4349" g_stop="4763" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E324995" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4349" e_stop="4763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCTTCTTCATATCTCCATTTTTATTCAATAATGGATTCAATTAAGCCATCCTCATCACAATTAGTATTCACGGTGAGAAGGCAAAATGCAGAGCTAATTGCTCCAGCAAAGCCAACTCCACGTGAAACTAAATTTCTCTCAGACATTGATGATCAAGAAGGTCTTCGATTTCAAATCCCCGTTATTAATTTTTATCGTAAAGATTCGGATATTTCTACGGGAGGAAATCATGACCCTGTAAAAGTGATTAAAAAGGCAATAGCTGAAACACTTGTTTTTTACTATCCGTTTGCTGGTCGGCTCCGGGAAGGAAATGGCCGGAAACTGATGGTGGATTGTACCGGGGAAGGAGTTATGTTCGTGGAAGCGGATGCTGATGTGACCCTTGAACAATTTGGAGATGAACTTCA</genome_strand>
        <mrna_strand>CAAAATCTTCTTCATATCTCCATTTTTATTCAATAATGGATTCAATTAAGCCATCCTCATCACAATTAGTATTCACGGTGAGAAGGCAAAATGCAGAGCTAATTGCTCCAGCAAAGCCAACTCCACGTGAAACTAAATTTCTCTCAGACATTGATGATCAAGAAGGTCTTCGATTTCAAATCCCCGTTATTAATTTTTATCGTAAAGATTCGGATATTTCTACGGGAGGAAATCATGACCCTGTAAAAGTGATTAAAAAGGCAATAGCTGAAACACTTGATTTTTACTATCCGTTTGCTGGTCGGCTCCGGGAAGGAAATGGCCGGAAACTGATGGTGGATTGTACCGGGGAAGGAGTTATGTTCGTGGAAGCGGATGCTGATGTGACCCTTGAACAATTTGGAGATGAACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307981" ref_strand="+" ref_description="SGN-E307981 [cLEY-14-C19]">
      <seq>aaaatcttcttcatatctccatttttattcaataatggattcaattaagccatcctcatcacaattagtattcacggtgagaaggcaaaatgcagagctaattgctccagcaaagccaactccacgtgaaactaaatttctctcagacattgatgatcaagaaggtcttcgatttcaaatccccgttattaatttttatcgtaaagattcggatatttctacgggaggaaatcatgaccctgtaaaagtgattaaaaaggcaatagctgaaacacttgatttttactatccgtttgctggtcggctccgggaaggaaatggccggaaactgatggtggattgtaccggggaaggagttatgttcgtggaagcggatgctgatgtgacccttgaacaatttggagatgaacttcagcctccatttccgtgtttggaagaactcctttatgatgttcctggctctgctgaagttcttaattctcctctgcttcttattcaggtcacttctctcaagtgtggtggtttcattttcgcagtgcgattaaaccacacaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4050" stop="8947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4350" g_stop="4848" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4849" i_stop="4973" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4974" g_stop="5031" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="557" r_length="58" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E307981" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4350" e_stop="4848"/>
          <exon e_start="4974" e_stop="5031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTTCTTCATATCTCCATTTTTATTCAATAATGGATTCAATTAAGCCATCCTCATCACAATTAGTATTCACGGTGAGAAGGCAAAATGCAGAGCTAATTGCTCCAGCAAAGCCAACTCCACGTGAAACTAAATTTCTCTCAGACATTGATGATCAAGAAGGTCTTCGATTTCAAATCCCCGTTATTAATTTTTATCGTAAAGATTCGGATATTTCTACGGGAGGAAATCATGACCCTGTAAAAGTGATTAAAAAGGCAATAGCTGAAACACTTGTTTTTTACTATCCGTTTGCTGGTCGGCTCCGGGAAGGAAATGGCCGGAAACTGATGGTGGATTGTACCGGGGAAGGAGTTATGTTCGTGGAAGCGGATGCTGATGTGACCCTTGAACAATTTGGAGATGAACTTCAGCCTCCATTTCCGTGTTTGGAAGAACTCCTTTATGATGTTCCTGGCTCTGCTGAAGTTCTTAATTCTCCTCTGCTTCTTATTCAGGTACTAAGAATTTTGAATCCATCAAAATTTAAATAGTGAATCCATCTGCCAATAGTTAAAAGTTTTTGTTAACTTACAATACTTGAATGTTTAATTAACGAATATATATATATATATATATGTAGGTCACTCGTCTCAAGTGTGGTGGTTTCATTTTCGCAGTGCGATTAAACCACACAATGA</genome_strand>
        <mrna_strand>AAAATCTTCTTCATATCTCCATTTTTATTCAATAATGGATTCAATTAAGCCATCCTCATCACAATTAGTATTCACGGTGAGAAGGCAAAATGCAGAGCTAATTGCTCCAGCAAAGCCAACTCCACGTGAAACTAAATTTCTCTCAGACATTGATGATCAAGAAGGTCTTCGATTTCAAATCCCCGTTATTAATTTTTATCGTAAAGATTCGGATATTTCTACGGGAGGAAATCATGACCCTGTAAAAGTGATTAAAAAGGCAATAGCTGAAACACTTGATTTTTACTATCCGTTTGCTGGTCGGCTCCGGGAAGGAAATGGCCGGAAACTGATGGTGGATTGTACCGGGGAAGGAGTTATGTTCGTGGAAGCGGATGCTGATGTGACCCTTGAACAATTTGGAGATGAACTTCAGCCTCCATTTCCGTGTTTGGAAGAACTCCTTTATGATGTTCCTGGCTCTGCTGAAGTTCTTAATTCTCCTCTGCTTCTTATTCAG.............................................................................................................................GTCACTTCTCTCAAGTGTGGTGGTTTCATTTTCGCAGTGCGATTAAACCACACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308154" ref_strand="+" ref_description="SGN-E308154 [cLEY-14-G18]">
      <seq>aaaatcttcttcatatctccatttttattcaataatggattcaattaagccatcctcatcacaattagtattcacggtgagaaggcaaaatgcagagctaattgctccagcaaagccaactccacgtgaaactaaatttctctcagacattgatgatcaagaaggtcttcgatttcaaatccccgttattaatttttatcgtaaagattcggatatttctacgggaggaaatcatgaccctgtaaaagtgattaaaaaggcaatagctgaaacacttgatttttactatccgtttgctggtcggctccgggaaggaaatggccggaaactgatggtggattgtaccggggaaggagttatgttcgtggaagcggatgctgatgtgacccttgaacaatttggagatgaacttcagcctccatttccgtgtttggaagaactcctttatgatgttcctggctctgctgaagttcttaattctcctctgcttcttattcaggtcactcgtctcaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4050" stop="5290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4350" g_stop="4848" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4849" i_stop="4973" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4974" g_stop="4990" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="516" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E308154" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4350" e_stop="4848"/>
          <exon e_start="4974" e_stop="4990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTTCTTCATATCTCCATTTTTATTCAATAATGGATTCAATTAAGCCATCCTCATCACAATTAGTATTCACGGTGAGAAGGCAAAATGCAGAGCTAATTGCTCCAGCAAAGCCAACTCCACGTGAAACTAAATTTCTCTCAGACATTGATGATCAAGAAGGTCTTCGATTTCAAATCCCCGTTATTAATTTTTATCGTAAAGATTCGGATATTTCTACGGGAGGAAATCATGACCCTGTAAAAGTGATTAAAAAGGCAATAGCTGAAACACTTGTTTTTTACTATCCGTTTGCTGGTCGGCTCCGGGAAGGAAATGGCCGGAAACTGATGGTGGATTGTACCGGGGAAGGAGTTATGTTCGTGGAAGCGGATGCTGATGTGACCCTTGAACAATTTGGAGATGAACTTCAGCCTCCATTTCCGTGTTTGGAAGAACTCCTTTATGATGTTCCTGGCTCTGCTGAAGTTCTTAATTCTCCTCTGCTTCTTATTCAGGTACTAAGAATTTTGAATCCATCAAAATTTAAATAGTGAATCCATCTGCCAATAGTTAAAAGTTTTTGTTAACTTACAATACTTGAATGTTTAATTAACGAATATATATATATATATATATGTAGGTCACTCGTCTCAAGTG</genome_strand>
        <mrna_strand>AAAATCTTCTTCATATCTCCATTTTTATTCAATAATGGATTCAATTAAGCCATCCTCATCACAATTAGTATTCACGGTGAGAAGGCAAAATGCAGAGCTAATTGCTCCAGCAAAGCCAACTCCACGTGAAACTAAATTTCTCTCAGACATTGATGATCAAGAAGGTCTTCGATTTCAAATCCCCGTTATTAATTTTTATCGTAAAGATTCGGATATTTCTACGGGAGGAAATCATGACCCTGTAAAAGTGATTAAAAAGGCAATAGCTGAAACACTTGATTTTTACTATCCGTTTGCTGGTCGGCTCCGGGAAGGAAATGGCCGGAAACTGATGGTGGATTGTACCGGGGAAGGAGTTATGTTCGTGGAAGCGGATGCTGATGTGACCCTTGAACAATTTGGAGATGAACTTCAGCCTCCATTTCCGTGTTTGGAAGAACTCCTTTATGATGTTCCTGGCTCTGCTGAAGTTCTTAATTCTCCTCTGCTTCTTATTCAG.............................................................................................................................GTCACTCGTCTCAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370072" ref_strand="-" ref_description="SGN-E370072 [TUS-26-P8](-)">
      <seq>aaatcttcttcatatctccatttttattcaataatggattcaattaagccatcctcatcacaattagtattcacggtgagaaggcaaaatgcagagctaattgctccagcaaagccaactccacgtgaaactaaatttctctcagacattgatgatcaagaaggtcttcgatttcaaatccccgttattaatttttatcgtaaagattcggatatttctacgggaggaaatcatgaccctgtaaaagtgattaaaaaggcaatagctgaaacacttgatttttactatccgtttgctggtcggctccgggaaggaaatggccggaaactgatggtggattgtaccggggaaggagttatgttcgtggaagcggatgctgatgtgacccttgaacaatttggagatgaacttcagcctccatttccgtgtttggaagaactcctttatgatgttcctggctctgctgaagttcttaattctcctctgcttcttattcaggtcactcgtctcaagtgtggtggtttcattttcgcagtgcgattaaaccacacaatgagtgatgcagccggtcttgtccaattcatgactgctgttggtgaaatggcacgcggggcctctgttccgtctacactccctgtctggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4051" stop="5419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4351" g_stop="4848" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4849" i_stop="4973" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4974" g_stop="5119" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="644" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E370072" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370072" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4351" e_stop="4848"/>
          <exon e_start="4974" e_stop="5119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTCTTCATATCTCCATTTTTATTCAATAATGGATTCAATTAAGCCATCCTCATCACAATTAGTATTCACGGTGAGAAGGCAAAATGCAGAGCTAATTGCTCCAGCAAAGCCAACTCCACGTGAAACTAAATTTCTCTCAGACATTGATGATCAAGAAGGTCTTCGATTTCAAATCCCCGTTATTAATTTTTATCGTAAAGATTCGGATATTTCTACGGGAGGAAATCATGACCCTGTAAAAGTGATTAAAAAGGCAATAGCTGAAACACTTGTTTTTTACTATCCGTTTGCTGGTCGGCTCCGGGAAGGAAATGGCCGGAAACTGATGGTGGATTGTACCGGGGAAGGAGTTATGTTCGTGGAAGCGGATGCTGATGTGACCCTTGAACAATTTGGAGATGAACTTCAGCCTCCATTTCCGTGTTTGGAAGAACTCCTTTATGATGTTCCTGGCTCTGCTGAAGTTCTTAATTCTCCTCTGCTTCTTATTCAGGTACTAAGAATTTTGAATCCATCAAAATTTAAATAGTGAATCCATCTGCCAATAGTTAAAAGTTTTTGTTAACTTACAATACTTGAATGTTTAATTAACGAATATATATATATATATATATGTAGGTCACTCGTCTCAAGTGTGGTGGTTTCATTTTCGCAGTGCGATTAAACCACACAATGAGTGATGCAGCCGGTCTTGTCCAATTCATGACTGCTGTTGGTGAAATGGCACGCGGGGCCTCTGTTCCGTCTACACTCCCTGTCTGGTC</genome_strand>
        <mrna_strand>AAATCTTCTTCATATCTCCATTTTTATTCAATAATGGATTCAATTAAGCCATCCTCATCACAATTAGTATTCACGGTGAGAAGGCAAAATGCAGAGCTAATTGCTCCAGCAAAGCCAACTCCACGTGAAACTAAATTTCTCTCAGACATTGATGATCAAGAAGGTCTTCGATTTCAAATCCCCGTTATTAATTTTTATCGTAAAGATTCGGATATTTCTACGGGAGGAAATCATGACCCTGTAAAAGTGATTAAAAAGGCAATAGCTGAAACACTTGATTTTTACTATCCGTTTGCTGGTCGGCTCCGGGAAGGAAATGGCCGGAAACTGATGGTGGATTGTACCGGGGAAGGAGTTATGTTCGTGGAAGCGGATGCTGATGTGACCCTTGAACAATTTGGAGATGAACTTCAGCCTCCATTTCCGTGTTTGGAAGAACTCCTTTATGATGTTCCTGGCTCTGCTGAAGTTCTTAATTCTCCTCTGCTTCTTATTCAG.............................................................................................................................GTCACTCGTCTCAAGTGTGGTGGTTTCATTTTCGCAGTGCGATTAAACCACACAATGAGTGATGCAGCCGGTCTTGTCCAATTCATGACTGCTGTTGGTGAAATGGCACGCGGGGCCTCTGTTCCGTCTACACTCCCTGTCTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299848" ref_strand="+" ref_description="SGN-E299848 [cLEW-1-C24]">
      <seq>aaatcttcttcatatctccatttttattcaataatggattcaattaagccatcctcatcacaattagtattcacggtgagaaggcaaaatgcagagctaattgctccagcaaagccaactccacgtgaaactaaatttctctcagacattgatgatcaagaaggtcttcgatttcaaatccccgttattaatttttatcgtaaagattcggatatttctacgggaggaaatcatgaccctgtaaaagtgattaaaaaggcaatagctgaaacacttgatttttactatccgtttgctggtcggctccgggaaggaaatggccggaaactgatggtggattgtaccggggaaggagttatgttcgtggaagcggatgctgatgtgacccttgaacaatttggagatgaacttcagcctccatttccgtgtttggaagaactcctttatgatgttcctggctctgctgaagttcttaattctcctctgcttcttattcaggtcactcgtctcaagtgtggtggtttcattttcgcagtgcgattaaaccacacaatgagtgatgcagccggtcttgtccaattcatgactgctgttggtgaaatggcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4051" stop="5383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4351" g_stop="4848" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4849" i_stop="4973" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4974" g_stop="5083" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="608" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E299848" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4351" e_stop="4848"/>
          <exon e_start="4974" e_stop="5083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTCTTCATATCTCCATTTTTATTCAATAATGGATTCAATTAAGCCATCCTCATCACAATTAGTATTCACGGTGAGAAGGCAAAATGCAGAGCTAATTGCTCCAGCAAAGCCAACTCCACGTGAAACTAAATTTCTCTCAGACATTGATGATCAAGAAGGTCTTCGATTTCAAATCCCCGTTATTAATTTTTATCGTAAAGATTCGGATATTTCTACGGGAGGAAATCATGACCCTGTAAAAGTGATTAAAAAGGCAATAGCTGAAACACTTGTTTTTTACTATCCGTTTGCTGGTCGGCTCCGGGAAGGAAATGGCCGGAAACTGATGGTGGATTGTACCGGGGAAGGAGTTATGTTCGTGGAAGCGGATGCTGATGTGACCCTTGAACAATTTGGAGATGAACTTCAGCCTCCATTTCCGTGTTTGGAAGAACTCCTTTATGATGTTCCTGGCTCTGCTGAAGTTCTTAATTCTCCTCTGCTTCTTATTCAGGTACTAAGAATTTTGAATCCATCAAAATTTAAATAGTGAATCCATCTGCCAATAGTTAAAAGTTTTTGTTAACTTACAATACTTGAATGTTTAATTAACGAATATATATATATATATATATGTAGGTCACTCGTCTCAAGTGTGGTGGTTTCATTTTCGCAGTGCGATTAAACCACACAATGAGTGATGCAGCCGGTCTTGTCCAATTCATGACTGCTGTTGGTGAAATGGCACG</genome_strand>
        <mrna_strand>AAATCTTCTTCATATCTCCATTTTTATTCAATAATGGATTCAATTAAGCCATCCTCATCACAATTAGTATTCACGGTGAGAAGGCAAAATGCAGAGCTAATTGCTCCAGCAAAGCCAACTCCACGTGAAACTAAATTTCTCTCAGACATTGATGATCAAGAAGGTCTTCGATTTCAAATCCCCGTTATTAATTTTTATCGTAAAGATTCGGATATTTCTACGGGAGGAAATCATGACCCTGTAAAAGTGATTAAAAAGGCAATAGCTGAAACACTTGATTTTTACTATCCGTTTGCTGGTCGGCTCCGGGAAGGAAATGGCCGGAAACTGATGGTGGATTGTACCGGGGAAGGAGTTATGTTCGTGGAAGCGGATGCTGATGTGACCCTTGAACAATTTGGAGATGAACTTCAGCCTCCATTTCCGTGTTTGGAAGAACTCCTTTATGATGTTCCTGGCTCTGCTGAAGTTCTTAATTCTCCTCTGCTTCTTATTCAG.............................................................................................................................GTCACTCGTCTCAAGTGTGGTGGTTTCATTTTCGCAGTGCGATTAAACCACACAATGAGTGATGCAGCCGGTCTTGTCCAATTCATGACTGCTGTTGGTGAAATGGCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323528" ref_strand="+" ref_description="SGN-E323528 [cTOC-2-A9]">
      <seq>aatcttcttcatatctccatttttattcaataatggattcaattaagccatcctcatcacaattagtattcacggtgagaaggcaaaatgcagagctaattgctccagcaaagccaactccacgtgaaactaaatttctctcagacattgatgatcaagaaggtcttcgatttcaaatccccgttattaatttttatcgtaaagattcggatatttctacgggaggaaatcatgaccctgtaaaagtgattaaaaaggcaatagctgaaacacttgatttttactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4052" stop="4938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4352" g_stop="4638" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E323528" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4352" e_stop="4638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCTTCATATCTCCATTTTTATTCAATAATGGATTCAATTAAGCCATCCTCATCACAATTAGTATTCACGGTGAGAAGGCAAAATGCAGAGCTAATTGCTCCAGCAAAGCCAACTCCACGTGAAACTAAATTTCTCTCAGACATTGATGATCAAGAAGGTCTTCGATTTCAAATCCCCGTTATTAATTTTTATCGTAAAGATTCGGATATTTCTACGGGAGGAAATCATGACCCTGTAAAAGTGATTAAAAAGGCAATAGCTGAAACACTTGTTTTTTACTAT</genome_strand>
        <mrna_strand>AATCTTCTTCATATCTCCATTTTTATTCAATAATGGATTCAATTAAGCCATCCTCATCACAATTAGTATTCACGGTGAGAAGGCAAAATGCAGAGCTAATTGCTCCAGCAAAGCCAACTCCACGTGAAACTAAATTTCTCTCAGACATTGATGATCAAGAAGGTCTTCGATTTCAAATCCCCGTTATTAATTTTTATCGTAAAGATTCGGATATTTCTACGGGAGGAAATCATGACCCTGTAAAAGTGATTAAAAAGGCAATAGCTGAAACACTTGATTTTTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205739" ref_strand="+" ref_description="SGN-E205739 [cLEC-21-B2]">
      <seq>atatctccatttttattcaataatggattcaattaagccgtcctcatcacaattagtattcacggtgagaaggcaaaatgcagagctaattgctccagcaaagccaactccacgtgaaactaaatttctctcatacattgatgatcaagaagggcttcgatttcaaatccccgctattaatttttatcgtaaagattcggatatttctacgggaggaaatcatgaccctgttaaagtgattaaaaaggcagtagctgaaacacttgatttttactatccgattgctggtcggctccgggaaggaaatggccggaaactgatggtggattgtaccggggaaggagttatgttcgtggaagcggatgctgatgtgacccttgaacaatttggagatgaacttcagcctccatttccgtgtttggaagaactcctttatgatgttcctggctctgctgaagttctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4062" stop="5125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4362" g_stop="4825" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E205739" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4362" e_stop="4825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCTCCATTTTTATTCAATAATGGATTCAATTAAGCCATCCTCATCACAATTAGTATTCACGGTGAGAAGGCAAAATGCAGAGCTAATTGCTCCAGCAAAGCCAACTCCACGTGAAACTAAATTTCTCTCAGACATTGATGATCAAGAAGGTCTTCGATTTCAAATCCCCGTTATTAATTTTTATCGTAAAGATTCGGATATTTCTACGGGAGGAAATCATGACCCTGTAAAAGTGATTAAAAAGGCAATAGCTGAAACACTTGTTTTTTACTATCCGTTTGCTGGTCGGCTCCGGGAAGGAAATGGCCGGAAACTGATGGTGGATTGTACCGGGGAAGGAGTTATGTTCGTGGAAGCGGATGCTGATGTGACCCTTGAACAATTTGGAGATGAACTTCAGCCTCCATTTCCGTGTTTGGAAGAACTCCTTTATGATGTTCCTGGCTCTGCTGAAGTTCTTA</genome_strand>
        <mrna_strand>ATATCTCCATTTTTATTCAATAATGGATTCAATTAAGCCGTCCTCATCACAATTAGTATTCACGGTGAGAAGGCAAAATGCAGAGCTAATTGCTCCAGCAAAGCCAACTCCACGTGAAACTAAATTTCTCTCATACATTGATGATCAAGAAGGGCTTCGATTTCAAATCCCCGCTATTAATTTTTATCGTAAAGATTCGGATATTTCTACGGGAGGAAATCATGACCCTGTTAAAGTGATTAAAAAGGCAGTAGCTGAAACACTTGATTTTTACTATCCGATTGCTGGTCGGCTCCGGGAAGGAAATGGCCGGAAACTGATGGTGGATTGTACCGGGGAAGGAGTTATGTTCGTGGAAGCGGATGCTGATGTGACCCTTGAACAATTTGGAGATGAACTTCAGCCTCCATTTCCGTGTTTGGAAGAACTCCTTTATGATGTTCCTGGCTCTGCTGAAGTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306856" ref_strand="+" ref_description="SGN-E306856 [cLEY-11-B20]">
      <seq>cacgtgaaactaaatttctctcagacattgatgatcaagaaggtcttcgatttcaaatccccgttattaatttttatcgtaaagattcggatatttctacgggaggaaatcatgaccctgtaaaagtgattaaaaaggcaatagctgaaacacttgatttttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4172" stop="4937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4472" g_stop="4637" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E306856" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>166</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4472" e_stop="4637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGTGAAACTAAATTTCTCTCAGACATTGATGATCAAGAAGGTCTTCGATTTCAAATCCCCGTTATTAATTTTTATCGTAAAGATTCGGATATTTCTACGGGAGGAAATCATGACCCTGTAAAAGTGATTAAAAAGGCAATAGCTGAAACACTTGTTTTTTACTA</genome_strand>
        <mrna_strand>CACGTGAAACTAAATTTCTCTCAGACATTGATGATCAAGAAGGTCTTCGATTTCAAATCCCCGTTATTAATTTTTATCGTAAAGATTCGGATATTTCTACGGGAGGAAATCATGACCCTGTAAAAGTGATTAAAAAGGCAATAGCTGAAACACTTGATTTTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267685" ref_strand="+" ref_description="SGN-E267685 [cLEI-12-C2]">
      <seq>tcgtctcaagtgtggtggtttcattttcgcagtgcgattaaaccacacaatgagtgatgcagccggtcttgtccaattcatgactgctgttggtgaaatggcacgcggggcctctgttccgtctacactccctgtctggtccagagaattgctcaactcccgtgatccacctcgagtgacttgcacccaccatgaatacgatgaagttcctgatacaaagggtacaattatcccattagatgatatggtacacaaatcattcttttttggcccttctcaagtctcagctcttcgtcgattcatccctcctcatttgcgcaaatcttccacttttgaattgctcacatcagtcctctggcgctgccgcacaatttccctaaaaccagatcctgaagaggaagttcgcgtgctttgccttgtcaatgcacgttccaagttcaatccacccttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4679" stop="5731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4979" g_stop="5431" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E267685" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4979" e_stop="5431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCTCAAGTGTGGTGGTTTCATTTTCGCAGTGCGATTAAACCACACAATGAGTGATGCAGCCGGTCTTGTCCAATTCATGACTGCTGTTGGTGAAATGGCACGCGGGGCCTCTGTTCCGTCTACACTCCCTGTCTGGTCCAGAGAATTGCTCAACTCCCGTGATCCACCTCGAGTGACTTGCACCCACCATGAATACGATGAAGTTCCTGATACAAAGGGTACAATTATCCCATTAGATGATATGGTACACAAATCATTCTTTTTTGGCCCTTCTCAAGTCTCAGCTCTTCGTCGATTCATCCCTCCTCATTTGCGCAAATCTTCCACTTTTGAATTGCTCACATCAGTCCTCTGGCGCTGCCGCACAATTTCCCTAAAACCAGATCCTGAAGAGGAAGTTCGCGTGCTTTGCCTTGTCAATGCACGTTCCAAGTTCAATCCACCCTTACC</genome_strand>
        <mrna_strand>TCGTCTCAAGTGTGGTGGTTTCATTTTCGCAGTGCGATTAAACCACACAATGAGTGATGCAGCCGGTCTTGTCCAATTCATGACTGCTGTTGGTGAAATGGCACGCGGGGCCTCTGTTCCGTCTACACTCCCTGTCTGGTCCAGAGAATTGCTCAACTCCCGTGATCCACCTCGAGTGACTTGCACCCACCATGAATACGATGAAGTTCCTGATACAAAGGGTACAATTATCCCATTAGATGATATGGTACACAAATCATTCTTTTTTGGCCCTTCTCAAGTCTCAGCTCTTCGTCGATTCATCCCTCCTCATTTGCGCAAATCTTCCACTTTTGAATTGCTCACATCAGTCCTCTGGCGCTGCCGCACAATTTCCCTAAAACCAGATCCTGAAGAGGAAGTTCGCGTGCTTTGCCTTGTCAATGCACGTTCCAAGTTCAATCCACCCTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727962" ref_strand="+" ref_description="SGN-E727962 [LA16BB02]">
      <seq>caacttatgactgctgttggtgaaatggcacgcggggcctctgttccgtctacactccctgtctggtccagagaattgctcaactcccgtgatccacctcgagtgacttgcacccaccatgaatacgatgaagttcctgatacaaagggtacaattatcccattagatgatatggtacacaaatcattcttttttggcccttctcaagtctcagctcttcgtcgattcatccctcctcatttgcgcaaatcttccacttttgaattgctcacatcagtcctctggcgctgccgcacaatttccctaaaaccagatcctgaagaggaagttcgcgtgctttgccttgtcaatgcacgttccaagttcaatccacccttacctaacggcttctacgggaacgcctttgcgttccccgtagcagtcacaaccgcagctaaattgtgtaaaaatccattaggatatgctcttgagctagtgaagaaggctaagtcggacgtgacggaagaatacatgaaatccgtagcggatttgatggtgatgaaaggaaggcctcatttcacagtggtgcggacttatctggtgtcagacgtgactcgagcgggattcggagaagtagattttggatgggggaaagcagcgtatggtggaccggctaaaggaggagtaggagcaatccctggtgtggcgagtttttacataccatttaaaaacaaaaatggtgaaaatggaattgtggtgcctgtatgtttgcctgcttttgcaatggaaatattcgttagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4752" stop="6131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5052" g_stop="5831" g_length="780"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="780" r_length="780" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E727962" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5052" e_stop="5831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCATGACTGCTGTTGGTGAAATGGCACGCGGGGCCTCTGTTCCGTCTACACTCCCTGTCTGGTCCAGAGAATTGCTCAACTCCCGTGATCCACCTCGAGTGACTTGCACCCACCATGAATACGATGAAGTTCCTGATACAAAGGGTACAATTATCCCATTAGATGATATGGTACACAAATCATTCTTTTTTGGCCCTTCTCAAGTCTCAGCTCTTCGTCGATTCATCCCTCCTCATTTGCGCAAATCTTCCACTTTTGAATTGCTCACATCAGTCCTCTGGCGCTGCCGCACAATTTCCCTAAAACCAGATCCTGAAGAGGAAGTTCGCGTGCTTTGCCTTGTCAATGCACGTTCCAAGTTCAATCCACCCTTACCTAACGGCTTCTACGGGAACGCCTTTGCGTTCCCCGTAGCAGTCACAACCGCAGCTAAATTGTGTAAAAATCCATTAGGATATGCTCTTGAGCTAGTGAAGAAGGCTAAGTCGGACGTGACGGAAGAATACATGAAATCCGTAGCGGATTTGATGGTGATGAAAGGAAGGCCTCATTTCACAGTGGTGCGGACTTATCTGGTGTCAGACGTGACTCGAGCGGGATTCGGAGAAGTAGATTTTGGATGGGGGAAAGCAGCGTATGGTGGACCGGCTAAAGGAGGAGTAGGAGCAATCCCTGGTGTGGCGAGTTTTTACATACCATTTAAAAACAAAAATGGTGAAAATGGAATTGTGGTGCCTGTATGTTTGCCTGCTTTTGCAATGGAAATATTCGTTAGG</genome_strand>
        <mrna_strand>CAACTTATGACTGCTGTTGGTGAAATGGCACGCGGGGCCTCTGTTCCGTCTACACTCCCTGTCTGGTCCAGAGAATTGCTCAACTCCCGTGATCCACCTCGAGTGACTTGCACCCACCATGAATACGATGAAGTTCCTGATACAAAGGGTACAATTATCCCATTAGATGATATGGTACACAAATCATTCTTTTTTGGCCCTTCTCAAGTCTCAGCTCTTCGTCGATTCATCCCTCCTCATTTGCGCAAATCTTCCACTTTTGAATTGCTCACATCAGTCCTCTGGCGCTGCCGCACAATTTCCCTAAAACCAGATCCTGAAGAGGAAGTTCGCGTGCTTTGCCTTGTCAATGCACGTTCCAAGTTCAATCCACCCTTACCTAACGGCTTCTACGGGAACGCCTTTGCGTTCCCCGTAGCAGTCACAACCGCAGCTAAATTGTGTAAAAATCCATTAGGATATGCTCTTGAGCTAGTGAAGAAGGCTAAGTCGGACGTGACGGAAGAATACATGAAATCCGTAGCGGATTTGATGGTGATGAAAGGAAGGCCTCATTTCACAGTGGTGCGGACTTATCTGGTGTCAGACGTGACTCGAGCGGGATTCGGAGAAGTAGATTTTGGATGGGGGAAAGCAGCGTATGGTGGACCGGCTAAAGGAGGAGTAGGAGCAATCCCTGGTGTGGCGAGTTTTTACATACCATTTAAAAACAAAAATGGTGAAAATGGAATTGTGGTGCCTGTATGTTTGCCTGCTTTTGCAATGGAAATATTCGTTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351638" ref_strand="+" ref_description="SGN-E351638 [cTOS-8-C9]">
      <seq>atgatatggtacacaaatcattcttttttggcccttctcaagtctcagctcttcgtcgattcatccctcctcatttgcgcaaatcttccacttttgaattgctcacatcagtcctctggcgctgccgcacaatttccctaaaaccagatcctgaagaggaagttcgcgtgctttgccttgtcaatgcacgttccaagttcaatccacccttacctaacggcttctacgggaacgcctttgcgttccccgtagcagtcacaaccgcagctaaattgtgtaaaaatccattaggatatgctcttgagctagtgaagaaggctaagtcggacgtgacggaagaatacatgaaatccgtagcggatttgatggtgatgaaaggaaggcctcatttcacagtggtgcggacttatctggtgtcagacgtgactcgagcgggattcggagaagtagattttggatgggggaaagcagcgtatggtggaccggctaaaggaggagtangagcaatccctggtgtggcgagtttttacataccatttaaaaacaaaaatggtgaaaatggaattgtggtgcctgtatgtttgcctgcttttgcaatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4918" stop="6119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5218" g_stop="5819" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E351638" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5218" e_stop="5819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATATGGTACACAAATCATTCTTTTTTGGCCCTTCTCAAGTCTCAGCTCTTCGTCGATTCATCCCTCCTCATTTGCGCAAATCTTCCACTTTTGAATTGCTCACATCAGTCCTCTGGCGCTGCCGCACAATTTCCCTAAAACCAGATCCTGAAGAGGAAGTTCGCGTGCTTTGCCTTGTCAATGCACGTTCCAAGTTCAATCCACCCTTACCTAACGGCTTCTACGGGAACGCCTTTGCGTTCCCCGTAGCAGTCACAACCGCAGCTAAATTGTGTAAAAATCCATTAGGATATGCTCTTGAGCTAGTGAAGAAGGCTAAGTCGGACGTGACGGAAGAATACATGAAATCCGTAGCGGATTTGATGGTGATGAAAGGAAGGCCTCATTTCACAGTGGTGCGGACTTATCTGGTGTCAGACGTGACTCGAGCGGGATTCGGAGAAGTAGATTTTGGATGGGGGAAAGCAGCGTATGGTGGACCGGCTAAAGGAGGAGTAGGAGCAATCCCTGGTGTGGCGAGTTTTTACATACCATTTAAAAACAAAAATGGTGAAAATGGAATTGTGGTGCCTGTATGTTTGCCTGCTTTTGCAATGGAA</genome_strand>
        <mrna_strand>ATGATATGGTACACAAATCATTCTTTTTTGGCCCTTCTCAAGTCTCAGCTCTTCGTCGATTCATCCCTCCTCATTTGCGCAAATCTTCCACTTTTGAATTGCTCACATCAGTCCTCTGGCGCTGCCGCACAATTTCCCTAAAACCAGATCCTGAAGAGGAAGTTCGCGTGCTTTGCCTTGTCAATGCACGTTCCAAGTTCAATCCACCCTTACCTAACGGCTTCTACGGGAACGCCTTTGCGTTCCCCGTAGCAGTCACAACCGCAGCTAAATTGTGTAAAAATCCATTAGGATATGCTCTTGAGCTAGTGAAGAAGGCTAAGTCGGACGTGACGGAAGAATACATGAAATCCGTAGCGGATTTGATGGTGATGAAAGGAAGGCCTCATTTCACAGTGGTGCGGACTTATCTGGTGTCAGACGTGACTCGAGCGGGATTCGGAGAAGTAGATTTTGGATGGGGGAAAGCAGCGTATGGTGGACCGGCTAAAGGAGGAGTANGAGCAATCCCTGGTGTGGCGAGTTTTTACATACCATTTAAAAACAAAAATGGTGAAAATGGAATTGTGGTGCCTGTATGTTTGCCTGCTTTTGCAATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355152" ref_strand="+" ref_description="SGN-E355152 [cTOS-18-M23]">
      <seq>atgatatggtacacaaatcattcttttttggcccttctcaagtctcagctcttcgtcgattcatccctcctcatttgcgcaaatcttccacttttgaattgctcacatcagtcctctggcgctgccgcacaatttccctaaaaccagatcctgaagaggaagttcgcgtgctttgccttgtcaatgcacgttccaagttcaatccacccttacctaacggcttctacgggaacgcctttgcgttccccgtagcagtcacaaccgcagctaaattgtgtaaaaatccattaggatatgctcttgagctagtgaagaaggctaagtcggacgtgacggaagaatacatgaaatccgtagcggatttgatggtgatgaaaggaaggcctcatttcacagtggtgcggacttatctggtgtcagacgtgactcgagcgggattcggagaagtagattttggatgggggaaagcagcgtatggtggaccggctaaaggaggagtaggagcaatccctggtgtggcgagtttttacataccatttaaaaacaaaaatggtgaaaatgggattgtggtgcctgtatgnttgcctgcttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4918" stop="6112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5218" g_stop="5812" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E355152" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5218" e_stop="5812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATATGGTACACAAATCATTCTTTTTTGGCCCTTCTCAAGTCTCAGCTCTTCGTCGATTCATCCCTCCTCATTTGCGCAAATCTTCCACTTTTGAATTGCTCACATCAGTCCTCTGGCGCTGCCGCACAATTTCCCTAAAACCAGATCCTGAAGAGGAAGTTCGCGTGCTTTGCCTTGTCAATGCACGTTCCAAGTTCAATCCACCCTTACCTAACGGCTTCTACGGGAACGCCTTTGCGTTCCCCGTAGCAGTCACAACCGCAGCTAAATTGTGTAAAAATCCATTAGGATATGCTCTTGAGCTAGTGAAGAAGGCTAAGTCGGACGTGACGGAAGAATACATGAAATCCGTAGCGGATTTGATGGTGATGAAAGGAAGGCCTCATTTCACAGTGGTGCGGACTTATCTGGTGTCAGACGTGACTCGAGCGGGATTCGGAGAAGTAGATTTTGGATGGGGGAAAGCAGCGTATGGTGGACCGGCTAAAGGAGGAGTAGGAGCAATCCCTGGTGTGGCGAGTTTTTACATACCATTTAAAAACAAAAATGGTGAAAATGGAATTGTGGTGCCTGTATGTTTGCCTGCTTTTGC</genome_strand>
        <mrna_strand>ATGATATGGTACACAAATCATTCTTTTTTGGCCCTTCTCAAGTCTCAGCTCTTCGTCGATTCATCCCTCCTCATTTGCGCAAATCTTCCACTTTTGAATTGCTCACATCAGTCCTCTGGCGCTGCCGCACAATTTCCCTAAAACCAGATCCTGAAGAGGAAGTTCGCGTGCTTTGCCTTGTCAATGCACGTTCCAAGTTCAATCCACCCTTACCTAACGGCTTCTACGGGAACGCCTTTGCGTTCCCCGTAGCAGTCACAACCGCAGCTAAATTGTGTAAAAATCCATTAGGATATGCTCTTGAGCTAGTGAAGAAGGCTAAGTCGGACGTGACGGAAGAATACATGAAATCCGTAGCGGATTTGATGGTGATGAAAGGAAGGCCTCATTTCACAGTGGTGCGGACTTATCTGGTGTCAGACGTGACTCGAGCGGGATTCGGAGAAGTAGATTTTGGATGGGGGAAAGCAGCGTATGGTGGACCGGCTAAAGGAGGAGTAGGAGCAATCCCTGGTGTGGCGAGTTTTTACATACCATTTAAAAACAAAAATGGTGAAAATGGGATTGTGGTGCCTGTATGNTTGCCTGCTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734225" ref_strand="+" ref_description="SGN-E734225 [LB12AD12]">
      <seq>gcccttctcaagtctcagctcttcgtcgattcatccctcctcatttgcgcaaatcttccacttttgaattgctcacatcagtcctctggcgctgccgcacaatttccctaaaaccagatcctgaagaggaagttcgcgtgctttgccttgtcaatgcacgttccaagttcaatccacccttacctaacggcttctacgggaacgcctttgcgttccccgtagcagtcacaaccgcagctaaattgtgtaaaaatccattaggatatgctcttgagctagtgaagaaggctaagtcggacgtgacggaagaatacatgaaatccgtagcggatttgatggtgatgaaaggaaggcctcatttcacagtggtgcggacttatctggtgtcagacgtgactcgagcgggattcggagaagtagattttggatgggggaaagcagcgtatggtggaccggctaaaggaggagtaggagcaatccctggtgtggcgagtttttacataccatttaaaaacaaaaatggtgaaaatggaattgtggtgcctgtatgtttgcctgcttttgcaatggaaatattcgttagggaactcaatggcatgttgaaaagtgaagaagatccattaggcaaatacacaaactatgccatcatcaaacccgcactttgacatgttaatcgtatgcaatatttctttttaacttggttttgtaaagcattttaatatccttaatttatgttaagagtgcttttaccaattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4948" stop="6302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5248" g_stop="5999" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="756" polyA_stop="770"/>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E734225" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5248" e_stop="5999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTTCTCAAGTCTCAGCTCTTCGTCGATTCATCCCTCCTCATTTGCGCAAATCTTCCACTTTTGAATTGCTCACATCAGTCCTCTGGCGCTGCCGCACAATTTCCCTAAAACCAGATCCTGAAGAGGAAGTTCGCGTGCTTTGCCTTGTCAATGCACGTTCCAAGTTCAATCCACCCTTACCTAACGGCTTCTACGGGAACGCCTTTGCGTTCCCCGTAGCAGTCACAACCGCAGCTAAATTGTGTAAAAATCCATTAGGATATGCTCTTGAGCTAGTGAAGAAGGCTAAGTCGGACGTGACGGAAGAATACATGAAATCCGTAGCGGATTTGATGGTGATGAAAGGAAGGCCTCATTTCACAGTGGTGCGGACTTATCTGGTGTCAGACGTGACTCGAGCGGGATTCGGAGAAGTAGATTTTGGATGGGGGAAAGCAGCGTATGGTGGACCGGCTAAAGGAGGAGTAGGAGCAATCCCTGGTGTGGCGAGTTTTTACATACCATTTAAAAACAAAAATGGTGAAAATGGAATTGTGGTGCCTGTATGTTTGCCTGCTTTTGCAATGGAAATATTCGTTAGGGAACTCAATGGCATGTTGAAAAGTGAAGAAGATCCATTAGGCAAATACACAAACTATGCCATCATCAAACCCGCACTTTGACATGTTAATCGCATGCAATATTTCTTTTTAACTTGGTTTTGTAAAGCATTTTAATATCCTTAATTTATGTTAAGAGTGCTTTTACCA</genome_strand>
        <mrna_strand>GCCCTTCTCAAGTCTCAGCTCTTCGTCGATTCATCCCTCCTCATTTGCGCAAATCTTCCACTTTTGAATTGCTCACATCAGTCCTCTGGCGCTGCCGCACAATTTCCCTAAAACCAGATCCTGAAGAGGAAGTTCGCGTGCTTTGCCTTGTCAATGCACGTTCCAAGTTCAATCCACCCTTACCTAACGGCTTCTACGGGAACGCCTTTGCGTTCCCCGTAGCAGTCACAACCGCAGCTAAATTGTGTAAAAATCCATTAGGATATGCTCTTGAGCTAGTGAAGAAGGCTAAGTCGGACGTGACGGAAGAATACATGAAATCCGTAGCGGATTTGATGGTGATGAAAGGAAGGCCTCATTTCACAGTGGTGCGGACTTATCTGGTGTCAGACGTGACTCGAGCGGGATTCGGAGAAGTAGATTTTGGATGGGGGAAAGCAGCGTATGGTGGACCGGCTAAAGGAGGAGTAGGAGCAATCCCTGGTGTGGCGAGTTTTTACATACCATTTAAAAACAAAAATGGTGAAAATGGAATTGTGGTGCCTGTATGTTTGCCTGCTTTTGCAATGGAAATATTCGTTAGGGAACTCAATGGCATGTTGAAAAGTGAAGAAGATCCATTAGGCAAATACACAAACTATGCCATCATCAAACCCGCACTTTGACATGTTAATCGTATGCAATATTTCTTTTTAACTTGGTTTTGTAAAGCATTTTAATATCCTTAATTTATGTTAAGAGTGCTTTTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734441" ref_strand="+" ref_description="SGN-E734441 [LB12CG02]">
      <seq>gcccttctcaagtctcagctcttcgtcgattcatccctcctcatttgcgcaaatcttccacttttgaattgctcacatcagtcctctggcgctgccgcacaatttccctaaaaccagatcctgaagaggaagttcgcgtgctttgccttgtcaatgcacgttccaagttcaatccacccttacctaacggcttctacgggaacgcctttgcgttccccgtagcagtcacaaccgcagctaaattgtgtaaaaatccattaggatatgctcttgagctagtgaagaaggctaagtcggacgtgacggaagaatacatgaaatccgtagcggatttgatggtgatgaaaggaaggcctcatttcacagtggtgcggacttatctggtgtcagacgtgactcgagcgggattcggagaagtagattttggatgggggaaagcagcgtatggtggaccggctaaaggaggagtaggagcaatccctggtgtggcgagtttttacataccatttaaaaacaaaaatggtgaaaatggaattgtggtgcctgtatgtttgcctgcttttgcaatggaaatattcgttagggaactcaatggcatgttgaaaagtgaagaagatccattaggcaaatacacaaactatgccatcatcaaacccgcactttgacatgttaatcgtatgcaatatttctttttaacttggttttgtaaagcattttaatatccttaatttatgttaagagtgcttttaccaattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="4948" stop="6302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5248" g_stop="5999" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="756" polyA_stop="770"/>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E734441" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5248" e_stop="5999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTTCTCAAGTCTCAGCTCTTCGTCGATTCATCCCTCCTCATTTGCGCAAATCTTCCACTTTTGAATTGCTCACATCAGTCCTCTGGCGCTGCCGCACAATTTCCCTAAAACCAGATCCTGAAGAGGAAGTTCGCGTGCTTTGCCTTGTCAATGCACGTTCCAAGTTCAATCCACCCTTACCTAACGGCTTCTACGGGAACGCCTTTGCGTTCCCCGTAGCAGTCACAACCGCAGCTAAATTGTGTAAAAATCCATTAGGATATGCTCTTGAGCTAGTGAAGAAGGCTAAGTCGGACGTGACGGAAGAATACATGAAATCCGTAGCGGATTTGATGGTGATGAAAGGAAGGCCTCATTTCACAGTGGTGCGGACTTATCTGGTGTCAGACGTGACTCGAGCGGGATTCGGAGAAGTAGATTTTGGATGGGGGAAAGCAGCGTATGGTGGACCGGCTAAAGGAGGAGTAGGAGCAATCCCTGGTGTGGCGAGTTTTTACATACCATTTAAAAACAAAAATGGTGAAAATGGAATTGTGGTGCCTGTATGTTTGCCTGCTTTTGCAATGGAAATATTCGTTAGGGAACTCAATGGCATGTTGAAAAGTGAAGAAGATCCATTAGGCAAATACACAAACTATGCCATCATCAAACCCGCACTTTGACATGTTAATCGCATGCAATATTTCTTTTTAACTTGGTTTTGTAAAGCATTTTAATATCCTTAATTTATGTTAAGAGTGCTTTTACCA</genome_strand>
        <mrna_strand>GCCCTTCTCAAGTCTCAGCTCTTCGTCGATTCATCCCTCCTCATTTGCGCAAATCTTCCACTTTTGAATTGCTCACATCAGTCCTCTGGCGCTGCCGCACAATTTCCCTAAAACCAGATCCTGAAGAGGAAGTTCGCGTGCTTTGCCTTGTCAATGCACGTTCCAAGTTCAATCCACCCTTACCTAACGGCTTCTACGGGAACGCCTTTGCGTTCCCCGTAGCAGTCACAACCGCAGCTAAATTGTGTAAAAATCCATTAGGATATGCTCTTGAGCTAGTGAAGAAGGCTAAGTCGGACGTGACGGAAGAATACATGAAATCCGTAGCGGATTTGATGGTGATGAAAGGAAGGCCTCATTTCACAGTGGTGCGGACTTATCTGGTGTCAGACGTGACTCGAGCGGGATTCGGAGAAGTAGATTTTGGATGGGGGAAAGCAGCGTATGGTGGACCGGCTAAAGGAGGAGTAGGAGCAATCCCTGGTGTGGCGAGTTTTTACATACCATTTAAAAACAAAAATGGTGAAAATGGAATTGTGGTGCCTGTATGTTTGCCTGCTTTTGCAATGGAAATATTCGTTAGGGAACTCAATGGCATGTTGAAAAGTGAAGAAGATCCATTAGGCAAATACACAAACTATGCCATCATCAAACCCGCACTTTGACATGTTAATCGTATGCAATATTTCTTTTTAACTTGGTTTTGTAAAGCATTTTAATATCCTTAATTTATGTTAAGAGTGCTTTTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236680" ref_strand="+" ref_description="SGN-E236680 [cLEL-7-B22](-)">
      <seq>actcgagcgggattcggagaagtagattttggatgggggaaagcagcgtatggtggaccggctaaaggaggagtaggagcaatccctggtgtggcgagtttttacataccatttaaaaacaaaaatggtgaaaatggaattgtggtgcctgtatgtttgcctgcttttgcaatggaaatattcgttaggggaactcaatggcatgttgaaaagtgaagaagatccattaggcaaatacacaaactatgccatcatcaaacccgcactttgaaaagttactactaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5343" stop="6221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5643" g_stop="5922" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="284" polyA_stop="302"/>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E236680" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5643" e_stop="5922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCGAGCGGGATTCGGAGAAGTAGATTTTGGATGGGGGAAAGCAGCGTATGGTGGACCGGCTAAAGGAGGAGTAGGAGCAATCCCTGGTGTGGCGAGTTTTTACATACCATTTAAAAACAAAAATGGTGAAAATGGAATTGTGGTGCCTGTATGTTTGCCTGCTTTTGCAATGGAAATATTCGTTA-GGGAACTCAATGGCATGTTGAAAAGTGAAGAAGATCCATTAGGCAAATACACAAACTATGCCATCATCAAACCCGCACTTTGACATGTTAATC</genome_strand>
        <mrna_strand>ACTCGAGCGGGATTCGGAGAAGTAGATTTTGGATGGGGGAAAGCAGCGTATGGTGGACCGGCTAAAGGAGGAGTAGGAGCAATCCCTGGTGTGGCGAGTTTTTACATACCATTTAAAAACAAAAATGGTGAAAATGGAATTGTGGTGCCTGTATGTTTGCCTGCTTTTGCAATGGAAATATTCGTTAGGGGAACTCAATGGCATGTTGAAAAGTGAAGAAGATCCATTAGGCAAATACACAAACTATGCCATCATCAAACCCGCACTTTGAAAAGTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351629" ref_strand="+" ref_description="SGN-E351629 [cTOS-8-A1]">
      <seq>cctggtgtggcgagtttttacataccatttaaaaacaaaaatggtgaaaatggaattgtggtgcctgtatgtttgcctgcttttgcaatggaaatattcgttagggaactcaatggcatgttgaaaagtgaagaagatccattaggcaaatacacaaactatgccatcatcaaacccgcactttgacatgttaatcgtatgcaatatttctttttaacttggttttgtaaagcattttaatatccttaatttatgttaagagtgcttttaccaattccttccctgcgtaattacattttttttttccatgcattactttcttttgtcagttgatgacatctttgtgaaatgaatgtaatgggcctccgttgtgttccctggcagaatgtgcagtgggcaaccattaatggtactatctccataatacttttcccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="5427" stop="6459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5727" g_stop="6134" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E351629" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5727" e_stop="6134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGTGTGGCGAGTTTTTACATACCATTTAAAAACAAAAATGGTGAAAATGGAATTGTGGTGCCTGTATGTTTGCCTGCTTTTGCAATGGAAATATTCGTTAGGGAACTCAATGGCATGTTGAAAAGTGAAGAAGATCCATTAGGCAAATACACAAACTATGCCATCATCAAACCCGCACTTTGACATGTTAATCGCATGCAATATTTCTTTTTAACTTGGTTTTGTAAAGCATTTTAATATCCTTAATTTATGTTAAGAGTGCTTTTACCAATTCCTTCCCTGCGTAATTACATTTTTTTTTTCGATGCATTACTTTCTTTTGTCAGTTGATGACATCTTTGTGAAGTGAATGTAATGGTCCTCCGTTGTGTTCCCTGGCAGAATGTGCAGTGGTCAACTATTAAG</genome_strand>
        <mrna_strand>CCTGGTGTGGCGAGTTTTTACATACCATTTAAAAACAAAAATGGTGAAAATGGAATTGTGGTGCCTGTATGTTTGCCTGCTTTTGCAATGGAAATATTCGTTAGGGAACTCAATGGCATGTTGAAAAGTGAAGAAGATCCATTAGGCAAATACACAAACTATGCCATCATCAAACCCGCACTTTGACATGTTAATCGTATGCAATATTTCTTTTTAACTTGGTTTTGTAAAGCATTTTAATATCCTTAATTTATGTTAAGAGTGCTTTTACCAATTCCTTCCCTGCGTAATTACATTTTTTTTTTCCATGCATTACTTTCTTTTGTCAGTTGATGACATCTTTGTGAAATGAATGTAATGGGCCTCCGTTGTGTTCCCTGGCAGAATGTGCAGTGGGCAACCATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313417" ref_strand="+" ref_description="SGN-E313417 [cTOA-13-E20]">
      <seq>gtcgcaaattcaaaattgaaaaaggtgggaaatcacaaagcactttcccaatccgaacggcaaccagaagctcccattcttctcaccgctctctaaccggaaacttccaccggcgcacgcaccacttctcaggttcacttctcgtaacgtgtaagtctactagatctataaattgacgactgcaatggcggaaatcataagccctaatcccaaactgaaaggtccaggtccattttctccgacaaaattcgtcttgggctccaatgacgacaagctcgaacgcgctcaagcacgcgccgcccgtgctgcggtcatccgtcgtaagcccatccctgttgcgcctcctccatctgaagatccttgtcttgacaaggagcagattctcgaactcttccagaattgcatcaaactcgccagtgaaaataaaattaatcagaagaatacttgggagctaggtctaattgatcatctatgcgagatagttaaagttgaacaagagaatgattccgagaccaacttccaaaaagcaagttgtactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="13292" stop="14535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13592" g_stop="14015" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14016" i_stop="14124" i_length="109">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14125" g_stop="14226" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="526" r_length="102" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E313417" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13592" e_stop="14015"/>
          <exon e_start="14125" e_stop="14226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCAAATTCAAAATTGGAAAAGGTGGGAAATCACAAATCACTTTCCCAATCCGAACGGCAACCAGAAGCTCCCATTCTTCTCACCGCTCTCTAACCGGAAACTTCCACCGGCGCACGCACCACTTCTCAGGTTCACTTCTCGTAACGTGTAAGTCTACTAGATCTATAAATTGACGACTGCAATGGCGGAAATCATAAGCCCTAATCCCAAACTGAAAGGTCCAGGTCCATTTTCTCCGACAAAATTCGTCTTGGGCTCCAATGACGACAAGCTCGAACGCGCTCAAGCACGCGCCGCCCGTGCTGCGGTCATCCGTCGTAAGCCCATCCCTGTTGCGCCTCCTCCATCTGAAGATCCTTGTCTTGACAAGGAGCAGATTCTCGAACTCTTCCAGAATTGCATCAAACTCGCCAGTGAAAATGTATCACTTCTGCTGTTTTTCACTTGTTTTTTAGTTTCTCATGTGTGATTTGATTTTAGAGTGCTGTTGGTGAGATTTTGATTTACTTTGGAACTACTATTGGATACAGAAAATTAATCAGAAGAATACTTGGGAGCTAGGTCTAATTGATCATCTATGCGAGATAGTTAAAGTTGAACAAGAGAATGATTCCGAGACCAACTTCCAGAAG</genome_strand>
        <mrna_strand>GTCGCAAATTCAAAATTGAAAAAGGTGGGAAATCACAAAGCACTTTCCCAATCCGAACGGCAACCAGAAGCTCCCATTCTTCTCACCGCTCTCTAACCGGAAACTTCCACCGGCGCACGCACCACTTCTCAGGTTCACTTCTCGTAACGTGTAAGTCTACTAGATCTATAAATTGACGACTGCAATGGCGGAAATCATAAGCCCTAATCCCAAACTGAAAGGTCCAGGTCCATTTTCTCCGACAAAATTCGTCTTGGGCTCCAATGACGACAAGCTCGAACGCGCTCAAGCACGCGCCGCCCGTGCTGCGGTCATCCGTCGTAAGCCCATCCCTGTTGCGCCTCCTCCATCTGAAGATCCTTGTCTTGACAAGGAGCAGATTCTCGAACTCTTCCAGAATTGCATCAAACTCGCCAGTGAAAAT.............................................................................................................AAAATTAATCAGAAGAATACTTGGGAGCTAGGTCTAATTGATCATCTATGCGAGATAGTTAAAGTTGAACAAGAGAATGATTCCGAGACCAACTTCCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325497" ref_strand="+" ref_description="SGN-E325497 [cTOC-1-N6]">
      <seq>taaccggaaacttcaccggcgcacgcaccactttaggttcactttcgtaacgtgtagtctactagatctataaattgacgactgcatggcggaatataagccctaatcccaaactgaaaggtccaggtccattttctccgacaaaattcgtcttgggctccaatgacgacaagctcgaacgcgctcaagcacgcgccgcccgtgctgcggtcatccgtcgtaagcccatccctgttgcgcctcctccatctgaagatccttgtcttgacaaggagcagattctcgaactcttccagaattgcatcaaactcgccagtgaaaataaaattaatcagaagaatacttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="13385" stop="14450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13685" g_stop="14015" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14016" i_stop="14124" i_length="109">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14125" g_stop="14150" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="349" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E325497" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13685" e_stop="14015"/>
          <exon e_start="14125" e_stop="14150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCGGAAACTTCCACCGGCGCACGCACCACTTCTCAGGTTCACTTCTCGTAACGTGTAAGTCTACTAGATCTATAAATTGACGACTGCAATGGCGGAAATCATAAGCCCTAATCCCAAACTGAAAGGTCCAGGTCCATTTTCTCCGACAAAATTCGTCTTGGGCTCCAATGACGACAAGCTCGAACGCGCTCAAGCACGCGCCGCCCGTGCTGCGGTCATCCGTCGTAAGCCCATCCCTGTTGCGCCTCCTCCATCTGAAGATCCTTGTCTTGACAAGGAGCAGATTCTCGAACTCTTCCAGAATTGCATCAAACTCGCCAGTGAAAATGTATCACTTCTGCTGTTTTTCACTTGTTTTTTAGTTTCTCATGTGTGATTTGATTTTAGAGTGCTGTTGGTGAGATTTTGATTTACTTTGGAACTACTATTGGATACAGAAAATTAATCAGAAGAATACTTGGGA</genome_strand>
        <mrna_strand>TAACCGGAAACTT-CACCGGCGCACGCACCACTT-T-AGGTTCACTT-TCGTAACGTGT-AGTCTACTAGATCTATAAATTGACGACTGCA-TGGCGG-AAT-ATAAGCCCTAATCCCAAACTGAAAGGTCCAGGTCCATTTTCTCCGACAAAATTCGTCTTGGGCTCCAATGACGACAAGCTCGAACGCGCTCAAGCACGCGCCGCCCGTGCTGCGGTCATCCGTCGTAAGCCCATCCCTGTTGCGCCTCCTCCATCTGAAGATCCTTGTCTTGACAAGGAGCAGATTCTCGAACTCTTCCAGAATTGCATCAAACTCGCCAGTGAAAAT.............................................................................................................AAAATTAATCAGAAGAATACTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337967" ref_strand="+" ref_description="SGN-E337967 [cTOE-14-G21]">
      <seq>ccggcgcacgcaccacttctcaggttcacttctcgtaacgtgtaagtctactagatctataaattgacgactgcaatggcggaaatcataagccctaatcccaaactgaaaggtccaggtccattttctccgacaaaattcgtcttgggctccaatgacgacaagctcgaacgcgctcaagcacgcgccgcccgtgctgcggtcatccgtcgtaagcccatccctgttgcgcctcctccatctgaagatccttgtcttgacaaggagcagattctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="13401" stop="14276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13701" g_stop="13976" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E337967" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13701" e_stop="13976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCGCACGCACCACTTCTCAGGTTCACTTCTCGTAACGTGTAAGTCTACTAGATCTATAAATTGACGACTGCAATGGCGGAAATCATAAGCCCTAATCCCAAACTGAAAGGTCCAGGTCCATTTTCTCCGACAAAATTCGTCTTGGGCTCCAATGACGACAAGCTCGAACGCGCTCAAGCACGCGCCGCCCGTGCTGCGGTCATCCGTCGTAAGCCCATCCCTGTTGCGCCTCCTCCATCTGAAGATCCTTGTCTTGACAAGGAGCAGATTCTC</genome_strand>
        <mrna_strand>CCGGCGCACGCACCACTTCTCAGGTTCACTTCTCGTAACGTGTAAGTCTACTAGATCTATAAATTGACGACTGCAATGGCGGAAATCATAAGCCCTAATCCCAAACTGAAAGGTCCAGGTCCATTTTCTCCGACAAAATTCGTCTTGGGCTCCAATGACGACAAGCTCGAACGCGCTCAAGCACGCGCCGCCCGTGCTGCGGTCATCCGTCGTAAGCCCATCCCTGTTGCGCCTCCTCCATCTGAAGATCCTTGTCTTGACAAGGAGCAGATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747021" ref_strand="+" ref_description="SGN-E747021 [GI|13506708]">
      <seq>gtttttttatattcagcttaccacccaacgccctcaaccttgactagccctccctcaaactctcctttttcaccaatctcactctccaaatagtattttctaggtttcatagtgataagcacatccacacgagagctatgaaatttctgaaacaaacgttacaatagacacacggcgtatttatttccctcaagcaatcgtatccccttagcagatcgaaaaaaaaaagaagataccgataatgaattctgctcctctatcaactccggcgccggttactctgcccgtccgttcgattccgggcagctacggattgccgttagtagggccaatcgcggatcgattagactacttctggttccaaaaaccggaaaacttcttcaccaagagaatggaaaagcacaagagcacggttttcagaacgaacgtgccgccgtgttttccgtttttcggtagtgtgaatccaaatgtggtggcggttttagatgtgaaatcgttttcgcatctgtttgatatggagattgtagagaaagctaatgtgcttgttggggatttcatgcccagtgttgtttatactggagatatgcgtgtttgtgcttatctcgatacttctgaacctaaacacgcccagattaagaatttttcacaggatattctaaaaagaggctcaaaaacatgggtgcctacactacttaaagagcttgatacaatgtttacaacttttgaagcagatctttcaaaatccaatacagcttctcttcttcctgcactccaaaaattcctctttaacttcttctccctcactatcctcggcgctgatccatctgtctccccagaaatcgccaattctggctacatctttcttgattcatggctagctattcaattagcccctactgtcagcattggtgtccttcaacctcttgaagaaattttagtccattcttttgcataccctttttttcttgtcaaaggtaattatgaaaaactcgttcaattcgtcaaaaatgaagccaaggaagttttaagcagggcacaaacagggtttcaactcacagaacaagaagccattcataaccttttgttcattcttgggttcaatgcttttggtggcttctctattttcttgccaactcttttgggaaatcttggagatgagaaaaacgcggatatgcaagagaaactgagaaaagaagtgagagacaaagtcggcgtaaatccagaaaacttgagttttgaaagtgttaaagaaatggaacttgttcagtcttttgtttatgaaacacttaggcttagtccaccagtaccaagtcaatatgcaagagcaagaaaagattttaaactgagttcacatgattcagtttacgaaatcaagaaaggggagcttctttgtggttatcagcctttagttatgaaagatccaaaggtgtttgatgaacctgaaaagtttgtgttggagagatttacaaaggaaaaagggaaagaattgctgaattatttgttttggtctaatggtccacaaactgggagacctactgaatcaaacaagcaatgtgctgctaaagatatggttactctaactgcttctttgattgtggcttacattttccaaaagtacgattctgtgagtttctcatctggttcactcacatctgtgaaaaaggctagttgagttctgggctgtgtagctgcaaaatctaagcttgctagacatgttgatcttaagtctcggtggctggcttttccttcctccccctattgtgtaatataatttcacaaataaaagttcaacatgagtgtacttattttctgttctgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="24729" stop="31661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24946" g_stop="24960" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24961" i_stop="25038" i_length="78">
            <donor d_prob="0.383" d_score="0.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25039" g_stop="25651" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="631" r_length="615" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25652" i_stop="30174" i_length="4523">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30175" g_stop="31366" g_length="1192"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="1823" r_length="1192" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E747021" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1820</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24946" e_stop="24960"/>
          <exon e_start="25039" e_stop="25651"/>
          <exon e_start="30175" e_stop="31366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTATATTCA-GTACTCAAACTAAAATTCAAATTAATCATAAAATAGTTTTATCATTGTACCACAACTGATATTGATAATGATATTCAGCTTACCACCCAACGCCCTCAACCTTGACTAGCCCTCCCTCAAACTCTCCTTTTTCACCAATCTCACTCTCCAAATAGTATTTTCTAGGTTTCATAGTGATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCG-AAAAAAAAA-AAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAGGTACACTTTTTCATCTCCCTGAATTATGCAAAAATCAACCATGAAAATTGTTTGAACACAGACTTGTTAGTTGAATTTCGGATTAGAAAAAACTTCCAAAAACATATTTTCACCGACAGAAATTCATAAATATCTCTGATTTGTATTCATGTGTAAACACAATTTCAATAGTATCTACTCGAATTCACACGATTTTTTTCGAGGCTTGCGCTCAAAGTCCGTTAAAATCTGTTTGGATTGACTTAAAAAGATAGATCAAATCTACTTTTAATTGAATTTTTAATTTTTAAAAGTAATTGATAAACATAAAAAAATATTTAAAATAAATTACAAAGTAAAATAAAAATTAACTTAAAATAAATTAGAAATCAAAAATAAACTTTTTATATTTTGATTATAAAATTATTTTAATTTGATTTTTTTATTTTTAACTTAAAAACTATTTTTTTAAAGTTAAATCTAAACTGGTTAATTTGGGGAAAGGTGATTAATATGTTGAATATCAAAATTAAGGTTTTTTTTAAAGAAAAATTATAATTAAGTTTTTTAATTTCTGACATAAACAAAAATAAAGATTCTTATAAAGTGATGTGACAAATTAAAATTTGAATGATATTTTTTAACCGAAGTAAAATTCTGGCTCCGCATATTCCAAATGCATTCCACGATGCAAAATGTTGTTTTCCTTTTGGCTGTTGAGAGTCCTCGTACTATGATTCGATAATTTAATAGTAGTGGGGTAATGAGGAGATTGTTATAGCCTATAGGATTGCTGCACGTATTAAGTTTAAATCAATTAAGATATTTGGGATTAAAATTTTTCGCGGTCCTTCGAGATGACTTAGTTAGTTTAGAGGATATCATTTAGTTAGTTTAGAGGATAGTTGTTTATACGGATGACTCGAAATTGATTCTTCCTCAATAACTTCTGAGTCGAGCTTGTCGCATAGGGCTGCTTAGTGCAGTTTACACTCCCTGTGTGGTTTGCAGGCTATTACATAGTGGGAGTTTACCCAATGCACACAGAGTGCTCACCCAAAAAGGGCAGAGGCTATGGCAGAAGTTGTAGCGATTGCGAGTTATTTTGGGGTTAAAAAGAAAAGAAAAAAAATTCTGTGACATTTAAAAATTTATTATAATTTCGTCGACTATAGGCTAAATGTTTATACAATGAAAATAAATTTGTGTTATGAGGATTAATTCAAAATAGATAAATTTAAATTGAATCATTTTATTTTAGTTGATTTGGGAAATTCCTAACTTAATGAGGGTAATTTTCTTTATTATTGAATATGTTGATAATAATAGGTGTATATTTGATTTTCTAAAATTTTCACCATTTCGTAATTTAATCATAAAAATTAGAAAATATCTGACGGAGATTAAAAGGTCTTTGTAAGCTAGCTTCAGCCATTCCTTTACATTTTGTCCTCACAATGAAGAAAATAGTATGATTTGATCACTTGCAGATTAAAAATAGTAGAAGAAAATGACTACAAATGACAATTGATTTTGATACTCTAAGTCGATAACAAAGTTATCTCAAAATTATAGTCTTGAAATTTATTTATTTTACTTTTTAGATGAGATCAAATAACATTAAATTTGAGGTATAATTTTTTCTTAAATTTAGTTATCTCTTTAATTAAATAAAGCACTATAAATTTAATTTTAAATATAATAGTGAGATATCTTTATCTTATGAACCAAATATTTGAAAATATTAGCACAGGTGCCAACATTTTACTAGTAATGACATTGAATATCTCCTTTCAGTCTTCACATCGTTTAAATACTATACAAAATTATAGTATCAAATTAAATTAATATGATTTTTTTTTTTGGATTATGAATTCGCAATTTGAGTCTCTTAAATTGTATATTTTTCTTCATGATAACTTCACAAATTATGACTACTATCAAAAGTTTCAGTTTTTATACAATCCTACCAGATTTCTTAGTTAATATTATCAATTTATTATTTCCAATGTATTTACGTAAATTTCCCATAAGAAAAAAGTTCCAATCATTATAAAAGCAACTAATCTTTTGCATTGCATTATAATAACAGGAGGGGAAGATGTTTATGAATTGTTTTTTGGGAAAACTACTTGATAAGACCACATTCATATCATATATACTAATTCTATCTGTACTTTCTGATAACTATACATATTTTACTTAGCGGAATTAGATATTTTAATGAGGGTTTAAAATCTGAGAAGTAAACATACGAACTAGTGGGAGGGGGTTCGACATCTATTGTATATATCTAAAAAATAATTTTAATCATGTATAAATAGTAATACTTTTTCACCGACTACATCCGCCCCTGATCTTACTATCAATTAAGAATTTTCTATCATATATTGAGAAACATACACCTAGTTACATATATTTTTGCTATCAGAAATATAAAAATAGAGAAAGGTGAACAAGATTGTCATGCATCTCAGATAAATATGAATCACACCAAATACATGTATATCAATTTAGTGTGATTCAAATATATCTAGGATACCAAATAAATAGAAAAGTAACGAGCGAAATTTGTTATATATTTCATATACATGCGAATCCAATTGTAATCCTCGATGAGTCTGAATTGGATATGCCTTGTTTTGTAACTCTTTGGAGAAATCACTTACATCTTAATAATATTACTCACGTCTTATGAACACTATACACTCTTTTGCTTTAATTTATGTGACATTTTTTTCTTTCTTGAGAGTCAAATCTAAGTTTGATCAAGAATTTGCATATGAAAATTTTAATTCTTTTGAATGAAATTTATATATATTTGTAAACTACGTAAAAAATATTAAAATAAATTACAATATTTAAAAATTTATTAAAAAATTTAAATAAAATAAATTTATTTAAATCTTTAAATTTAAATCACGTAAATTAAAGGAGTATCAAGGACCACGGGATCATGTGCATGTTGTCCTAAAGCTACTATTGGGCCAAGTCACAAATTTGTCTTACGTATTATCCTCGTATTATTATTGGGATATAGATGACAAGTGAGCTGACATTTCAGTGTAACAACCAGTCTAGGAGCGTCCACATTTTATACATGGCAAGTTAGCAACAATCAATGTGAAAATATCCACCTTAAATCACTTGTAGATTTTTTTTATTACTCCTTCTGATTTATAAAGAATCTTGACATGGAGTTTAAAAAGTATAAAAAGAGTTTTGAATCTTGTTATCCTAAATTAAAATTAAGTTAAATGTAAAAAATTGTTCTTTGATCTTCTCACCTTAAATATATCACGTAAAAAATTAAAATTAAAATATTACAATAAAAAAAAGAGATTAATTTTTCTATAACAGACTAAAAAAAGAAAGGAGACTATTTTTTTAAAACCAAAAAAATGTGTCTTTTCAAGAACATAAATATGACAGTTTTTAAATTTCTTTTGTTTGTTATTTGTGCATGATTTGACTCGTGTGGCTCTTATGCCTTGATAAAACCAATATTTGTCTAAGAATATCTTGTGTTTTGAGTTTTATTTCCTTCATTTAGTAATTGTTATTCTTTCCGTCTCTAATTACTTATTCATTTTAAATTGATTTGTTCCTATAAATCATAAAGTGAACTAATTAAAATTTTAAGATTTTTAAAAAATTCTGTCTTTTTCAATATAATAAATTGAGGGTTTAATAAGTAAATTCTTTTTTATTCTTTTTTTATTTGTCAAAATGAACAAGTAATTAGGAACAACTAAGAAAAAGAAAATGGACAAATAATTAGGGACAGAAGGACTATTATTCACTCTCTCCATTTCATTTTGATTGTTTGGTGAGTAACTTGTCCTTTTCGTGTTTTCCAATTGCATAAGATGCTTTAATCTATTGCATACGTTCAATCAACCGTTGTCTTGTATTAACTTGACATGAATTTAAGAAAGTAGAGAAGAGTTTTGAATATTGTGATCTTAAATTAAAGACATGTAGAATATACCAAAATGTTATTTAATTATGTGGCTTTCAACATGTTGTGTGTATACTTTGCCAAACATTTCCAAAAGCTATTAATAAGTTTGACCAACTTTAAAATCAATCCAAACAGACTCATTAAACAAAAAATATAAGCATTATGTATTGGTAGTTAAAACAATTTTGATACTCCTTTGTTTTGAATTTTATATAGGTCATGTAACCAGCATGAGTTGTAATACAGTTATGATGAGATTGCTTTACTCTTGATTAGAGGTTTTGAGGTTTCGAATTTTTAACTTTGAATATTGAAAAAATCCTGTTAGAAGCGCCACTCCAAATGGTCTACTTGTCATGTGTAATTCAAGCAGTAAAATCCACAGAATCAACCTAGATATGATGCATCAACATAGCTTATGTACATCTTCTTAGAATACGACTCTTTCCAGAACCCTGCATGATCACAAGTTTATTCATGCACTTAACTACCTTCTTGACTAGCAACTTGATTGCTTTCTTTTGTTTTAGAGAAAATGGAATAAGAAATTCTTATACATTGTGTATTGTTGATTTTGCAGATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAAATTCCTCTTTAACTTCTTCTCCCTCACTATCCTCGGCGCTGATCCATCTGTCTCCCCAGAAATCGCCAATTCTGGCTACATCTTTCTTGATTCATGGCTAGCTATTCAATTAGCACCTACTGTCAGCATTGGTGTCCTTCAACCTCTTGAAGAAATTTTAGTCCATTCTTTTGCATACCCTTTTTTTCTTGTCAAAGGTAATTATGAAAAACTCGTTCAATTCGTCAAAAATGAAGCCAAGGAAGTTTTAAGCAGGGCACAAACAGAGTTTCAACTCACAGAACAAGAAGCCATTCATAACCTTTTGTTCATTCTTGGGTTCAATGCTTTTGGTGGCTTCTCCATTTTCTTGCCAACTCTTTTGGGAAATCTTGGAGATGAGAAAAACGCGGATATGCAAGAGAAACTGAGAAAAGAAGTGAGAGACAAAGTCGGCGTAAATCCAGAAAACTTGAGTTTTGAAAGTGTTAAAGAAATGGAACTTGTTCAGTCTTTTGTTTATGAAACACTTAGGCTTAGTCCACCAGTACCAAGTCAATATGCAAGAGCAAGAAAAGATTTTAAACTGAGTTCACATGATTCAGTTTACGAAATCAAGAAAGGGGAGCTTCTTTGTGGTTATCAGCCTTTAGTTATGAAAGATCCAAAGGTGTTTGATGAACCTGAAAAGTTTGTGTTGGAGAGATTTACAAAGGAAAAAGGGAAAGAATTGCTGAATTATTTGTTTTGGTCTAATGGTCCACAAACTGGGAGACCTACTGAATCAAACAAGCAATGTGCTGCTAAAGATATGGTTACTCTAACTGCTTCTTTGATTGTGGCTTACATTTTCCAAAAGTACGATTCTGTGAGTTTCTCATCTGGTTCACTCACATCTGTGAAAAAGGCTAGTTGAGTTCTGGGCTGTGTAGCTGCAAAATCTAAGCTTGCTAGACATGTTGATCTTAAGTCTCGGTGGCTGGCTTTTCCTTCCTCCCCCTATTGTGTAATATAATTTCACAAATAAAAGTTCAACATGAGTGTACTTATTTTCTGTTCTGACTTAT</genome_strand>
        <mrna_strand>GTTTTTTTATATTCAG..............................................................................CTTACCACCCAACGCCCTCAACCTTGACTAGCCCTCCCTCAAACTCTCCTTTTTCACCAATCTCACTCTCCAAATAGTATTTTCTAGGTTTCATAGTGATAAGCACATCCACACGAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCGAAAAAAAAAAGAAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACACGCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAAATTCCTCTTTAACTTCTTCTCCCTCACTATCCTCGGCGCTGATCCATCTGTCTCCCCAGAAATCGCCAATTCTGGCTACATCTTTCTTGATTCATGGCTAGCTATTCAATTAGCCCCTACTGTCAGCATTGGTGTCCTTCAACCTCTTGAAGAAATTTTAGTCCATTCTTTTGCATACCCTTTTTTTCTTGTCAAAGGTAATTATGAAAAACTCGTTCAATTCGTCAAAAATGAAGCCAAGGAAGTTTTAAGCAGGGCACAAACAGGGTTTCAACTCACAGAACAAGAAGCCATTCATAACCTTTTGTTCATTCTTGGGTTCAATGCTTTTGGTGGCTTCTCTATTTTCTTGCCAACTCTTTTGGGAAATCTTGGAGATGAGAAAAACGCGGATATGCAAGAGAAACTGAGAAAAGAAGTGAGAGACAAAGTCGGCGTAAATCCAGAAAACTTGAGTTTTGAAAGTGTTAAAGAAATGGAACTTGTTCAGTCTTTTGTTTATGAAACACTTAGGCTTAGTCCACCAGTACCAAGTCAATATGCAAGAGCAAGAAAAGATTTTAAACTGAGTTCACATGATTCAGTTTACGAAATCAAGAAAGGGGAGCTTCTTTGTGGTTATCAGCCTTTAGTTATGAAAGATCCAAAGGTGTTTGATGAACCTGAAAAGTTTGTGTTGGAGAGATTTACAAAGGAAAAAGGGAAAGAATTGCTGAATTATTTGTTTTGGTCTAATGGTCCACAAACTGGGAGACCTACTGAATCAAACAAGCAATGTGCTGCTAAAGATATGGTTACTCTAACTGCTTCTTTGATTGTGGCTTACATTTTCCAAAAGTACGATTCTGTGAGTTTCTCATCTGGTTCACTCACATCTGTGAAAAAGGCTAGTTGAGTTCTGGGCTGTGTAGCTGCAAAATCTAAGCTTGCTAGACATGTTGATCTTAAGTCTCGGTGGCTGGCTTTTCCTTCCTCCCCCTATTGTGTAATATAATTTCACAAATAAAAGTTCAACATGAGTGTACTTATTTTCTGTTCTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256509" ref_strand="+" ref_description="SGN-E256509 [cLEG-38-A9]">
      <seq>gtaccacaactgatattgataatgatattcagcttaccacccaacgccctcaaccttgactagccctccctcaaactctcctttttcaccaatctcactctccaaatagtattttctaggtttcatagtgataagcacatccacacaagagctatgaaatttctgaaacaaacgttacaatagacacacggcgtatttatttccctcaagcaatcgtatccccttagcagatcgaaaaaaaaaagaagataccgataatgaattctgctcctctatcaactccggcgccggttactctgcccgtccgttcgattccgggcagctacggattgccgttagtagggccaatcgcggatcgattagactacttctggttccaaaaaccggaaaacttcttcaccaagagaatggaaaagcacaagagcacggttttcagaacgaacgtgccgccgtgttttccgtttttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="24707" stop="25772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25007" g_stop="25472" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E256509" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25007" e_stop="25472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACCACAACTGATATTGATAATGATATTCAGCTTACCACCCAACGCCCTCAACCTTGACTAGCCCTCCCTCAAACTCTCCTTTTTCACCAATCTCACTCTCCAAATAGTATTTTCTAGGTTTCATAGTGATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCG-AAAAAAAAA-AAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCG</genome_strand>
        <mrna_strand>GTACCACAACTGATATTGATAATGATATTCAGCTTACCACCCAACGCCCTCAACCTTGACTAGCCCTCCCTCAAACTCTCCTTTTTCACCAATCTCACTCTCCAAATAGTATTTTCTAGGTTTCATAGTGATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCGAAAAAAAAAAGAAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331868" ref_strand="+" ref_description="SGN-E331868 [cTOD-7-P1]">
      <seq>tcaaccttgactagccctccctcaaactctcctttttcaccaatctcactctccaaatagtattttctaggtttcatagtgataagcacatccacacaagagctatgaaatttctgaaacaaacgttacaatagacacacggcgtatttatttccctcaagcaatcgtatccccttagcagatcgaaaaaaaaaagaagataccgataatgaattctgctcctctatcaactccggcgccggttactctgcccgtccgttcgattccgggcagctacggattgccgttagtagggccaatcgcggatcgattagactacttctggttccaaaaaccggaaaacttcttcaccaagagaatggaaaagcacaagagcacggttttcagaacgaacgtgccgccgtgttttccgtttttcggtagtgtgaatccaaatgtggtggcggttttagatgtgaaatcgttttcgcatctgtttgatatggagattgtagagaaagctaatgtgcttgttggggatttcatgcccagtgttgtttatactggagatatgcgtgtttgtgcttatctcgatacttctgaacctaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="24756" stop="25946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25056" g_stop="25646" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E331868" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25056" e_stop="25646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCTTGACTAGCCCTCCCTCAAACTCTCCTTTTTCACCAATCTCACTCTCCAAATAGTATTTTCTAGGTTTCATAGTGATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCG-AAAAAAAAA-AAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATG</genome_strand>
        <mrna_strand>TCAACCTTGACTAGCCCTCCCTCAAACTCTCCTTTTTCACCAATCTCACTCTCCAAATAGTATTTTCTAGGTTTCATAGTGATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCGAAAAAAAAAAGAAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729868" ref_strand="+" ref_description="SGN-E729868 [LA22BD08]">
      <seq>ccttgactagccctccctcaaactctcctttttcaccaatctcactctccaaatagtattttctaggtttcatagtgataagcacatccacacaagagctatgaaatttctgaaacaaacgttacaatagacacacggcgtatttatttccctcaagcaatcgtatccccttagcagatcgaaaaaaaaaagaagataccgataatgaattctgctcctctatcaactccggcgccggttactctgcccgtccgttcgattccgggcagctacggattgccgttagtagggccaatcgcggatcgattagactacttctggttccaaaaaccggaaaacttcttcaccaagagaatggaaaagcacaagagcacggttttcagaacgaacgtgccgccgtgttttccgtttttcggtagtgtgaatccaaatgtggtggcggttttagatgtgaaatcgttttcgcatctgtttgatatggagattgtagagaaagctaatgtgcttgttggggatttcatgcccagtgttgtttatactggagatatgcgtgtttgtgcttatctcgatacttctgaacctaaacatgcccagattaagaatttttcacaggatattctaaaaagaggctcaaaaacatgggtgcctacactacttaaagagcttgatacaatgtttacaacttttgaagcagatctttcaaaatccaatacagcttctcttcttcctgcactccaaaaattcctctttaacttcttctccctcactatcctcggcgctgatccatctgtctccccagaaatcgccaattctggctacatctttcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="24760" stop="30711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25060" g_stop="25651" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25652" i_stop="30174" i_length="4523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30175" g_stop="30411" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="831" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E729868" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25060" e_stop="25651"/>
          <exon e_start="30175" e_stop="30411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGACTAGCCCTCCCTCAAACTCTCCTTTTTCACCAATCTCACTCTCCAAATAGTATTTTCTAGGTTTCATAGTGATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCG-AAAAAAAAA-AAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAGGTACACTTTTTCATCTCCCTGAATTATGCAAAAATCAACCATGAAAATTGTTTGAACACAGACTTGTTAGTTGAATTTCGGATTAGAAAAAACTTCCAAAAACATATTTTCACCGACAGAAATTCATAAATATCTCTGATTTGTATTCATGTGTAAACACAATTTCAATAGTATCTACTCGAATTCACACGATTTTTTTCGAGGCTTGCGCTCAAAGTCCGTTAAAATCTGTTTGGATTGACTTAAAAAGATAGATCAAATCTACTTTTAATTGAATTTTTAATTTTTAAAAGTAATTGATAAACATAAAAAAATATTTAAAATAAATTACAAAGTAAAATAAAAATTAACTTAAAATAAATTAGAAATCAAAAATAAACTTTTTATATTTTGATTATAAAATTATTTTAATTTGATTTTTTTATTTTTAACTTAAAAACTATTTTTTTAAAGTTAAATCTAAACTGGTTAATTTGGGGAAAGGTGATTAATATGTTGAATATCAAAATTAAGGTTTTTTTTAAAGAAAAATTATAATTAAGTTTTTTAATTTCTGACATAAACAAAAATAAAGATTCTTATAAAGTGATGTGACAAATTAAAATTTGAATGATATTTTTTAACCGAAGTAAAATTCTGGCTCCGCATATTCCAAATGCATTCCACGATGCAAAATGTTGTTTTCCTTTTGGCTGTTGAGAGTCCTCGTACTATGATTCGATAATTTAATAGTAGTGGGGTAATGAGGAGATTGTTATAGCCTATAGGATTGCTGCACGTATTAAGTTTAAATCAATTAAGATATTTGGGATTAAAATTTTTCGCGGTCCTTCGAGATGACTTAGTTAGTTTAGAGGATATCATTTAGTTAGTTTAGAGGATAGTTGTTTATACGGATGACTCGAAATTGATTCTTCCTCAATAACTTCTGAGTCGAGCTTGTCGCATAGGGCTGCTTAGTGCAGTTTACACTCCCTGTGTGGTTTGCAGGCTATTACATAGTGGGAGTTTACCCAATGCACACAGAGTGCTCACCCAAAAAGGGCAGAGGCTATGGCAGAAGTTGTAGCGATTGCGAGTTATTTTGGGGTTAAAAAGAAAAGAAAAAAAATTCTGTGACATTTAAAAATTTATTATAATTTCGTCGACTATAGGCTAAATGTTTATACAATGAAAATAAATTTGTGTTATGAGGATTAATTCAAAATAGATAAATTTAAATTGAATCATTTTATTTTAGTTGATTTGGGAAATTCCTAACTTAATGAGGGTAATTTTCTTTATTATTGAATATGTTGATAATAATAGGTGTATATTTGATTTTCTAAAATTTTCACCATTTCGTAATTTAATCATAAAAATTAGAAAATATCTGACGGAGATTAAAAGGTCTTTGTAAGCTAGCTTCAGCCATTCCTTTACATTTTGTCCTCACAATGAAGAAAATAGTATGATTTGATCACTTGCAGATTAAAAATAGTAGAAGAAAATGACTACAAATGACAATTGATTTTGATACTCTAAGTCGATAACAAAGTTATCTCAAAATTATAGTCTTGAAATTTATTTATTTTACTTTTTAGATGAGATCAAATAACATTAAATTTGAGGTATAATTTTTTCTTAAATTTAGTTATCTCTTTAATTAAATAAAGCACTATAAATTTAATTTTAAATATAATAGTGAGATATCTTTATCTTATGAACCAAATATTTGAAAATATTAGCACAGGTGCCAACATTTTACTAGTAATGACATTGAATATCTCCTTTCAGTCTTCACATCGTTTAAATACTATACAAAATTATAGTATCAAATTAAATTAATATGATTTTTTTTTTTGGATTATGAATTCGCAATTTGAGTCTCTTAAATTGTATATTTTTCTTCATGATAACTTCACAAATTATGACTACTATCAAAAGTTTCAGTTTTTATACAATCCTACCAGATTTCTTAGTTAATATTATCAATTTATTATTTCCAATGTATTTACGTAAATTTCCCATAAGAAAAAAGTTCCAATCATTATAAAAGCAACTAATCTTTTGCATTGCATTATAATAACAGGAGGGGAAGATGTTTATGAATTGTTTTTTGGGAAAACTACTTGATAAGACCACATTCATATCATATATACTAATTCTATCTGTACTTTCTGATAACTATACATATTTTACTTAGCGGAATTAGATATTTTAATGAGGGTTTAAAATCTGAGAAGTAAACATACGAACTAGTGGGAGGGGGTTCGACATCTATTGTATATATCTAAAAAATAATTTTAATCATGTATAAATAGTAATACTTTTTCACCGACTACATCCGCCCCTGATCTTACTATCAATTAAGAATTTTCTATCATATATTGAGAAACATACACCTAGTTACATATATTTTTGCTATCAGAAATATAAAAATAGAGAAAGGTGAACAAGATTGTCATGCATCTCAGATAAATATGAATCACACCAAATACATGTATATCAATTTAGTGTGATTCAAATATATCTAGGATACCAAATAAATAGAAAAGTAACGAGCGAAATTTGTTATATATTTCATATACATGCGAATCCAATTGTAATCCTCGATGAGTCTGAATTGGATATGCCTTGTTTTGTAACTCTTTGGAGAAATCACTTACATCTTAATAATATTACTCACGTCTTATGAACACTATACACTCTTTTGCTTTAATTTATGTGACATTTTTTTCTTTCTTGAGAGTCAAATCTAAGTTTGATCAAGAATTTGCATATGAAAATTTTAATTCTTTTGAATGAAATTTATATATATTTGTAAACTACGTAAAAAATATTAAAATAAATTACAATATTTAAAAATTTATTAAAAAATTTAAATAAAATAAATTTATTTAAATCTTTAAATTTAAATCACGTAAATTAAAGGAGTATCAAGGACCACGGGATCATGTGCATGTTGTCCTAAAGCTACTATTGGGCCAAGTCACAAATTTGTCTTACGTATTATCCTCGTATTATTATTGGGATATAGATGACAAGTGAGCTGACATTTCAGTGTAACAACCAGTCTAGGAGCGTCCACATTTTATACATGGCAAGTTAGCAACAATCAATGTGAAAATATCCACCTTAAATCACTTGTAGATTTTTTTTATTACTCCTTCTGATTTATAAAGAATCTTGACATGGAGTTTAAAAAGTATAAAAAGAGTTTTGAATCTTGTTATCCTAAATTAAAATTAAGTTAAATGTAAAAAATTGTTCTTTGATCTTCTCACCTTAAATATATCACGTAAAAAATTAAAATTAAAATATTACAATAAAAAAAAGAGATTAATTTTTCTATAACAGACTAAAAAAAGAAAGGAGACTATTTTTTTAAAACCAAAAAAATGTGTCTTTTCAAGAACATAAATATGACAGTTTTTAAATTTCTTTTGTTTGTTATTTGTGCATGATTTGACTCGTGTGGCTCTTATGCCTTGATAAAACCAATATTTGTCTAAGAATATCTTGTGTTTTGAGTTTTATTTCCTTCATTTAGTAATTGTTATTCTTTCCGTCTCTAATTACTTATTCATTTTAAATTGATTTGTTCCTATAAATCATAAAGTGAACTAATTAAAATTTTAAGATTTTTAAAAAATTCTGTCTTTTTCAATATAATAAATTGAGGGTTTAATAAGTAAATTCTTTTTTATTCTTTTTTTATTTGTCAAAATGAACAAGTAATTAGGAACAACTAAGAAAAAGAAAATGGACAAATAATTAGGGACAGAAGGACTATTATTCACTCTCTCCATTTCATTTTGATTGTTTGGTGAGTAACTTGTCCTTTTCGTGTTTTCCAATTGCATAAGATGCTTTAATCTATTGCATACGTTCAATCAACCGTTGTCTTGTATTAACTTGACATGAATTTAAGAAAGTAGAGAAGAGTTTTGAATATTGTGATCTTAAATTAAAGACATGTAGAATATACCAAAATGTTATTTAATTATGTGGCTTTCAACATGTTGTGTGTATACTTTGCCAAACATTTCCAAAAGCTATTAATAAGTTTGACCAACTTTAAAATCAATCCAAACAGACTCATTAAACAAAAAATATAAGCATTATGTATTGGTAGTTAAAACAATTTTGATACTCCTTTGTTTTGAATTTTATATAGGTCATGTAACCAGCATGAGTTGTAATACAGTTATGATGAGATTGCTTTACTCTTGATTAGAGGTTTTGAGGTTTCGAATTTTTAACTTTGAATATTGAAAAAATCCTGTTAGAAGCGCCACTCCAAATGGTCTACTTGTCATGTGTAATTCAAGCAGTAAAATCCACAGAATCAACCTAGATATGATGCATCAACATAGCTTATGTACATCTTCTTAGAATACGACTCTTTCCAGAACCCTGCATGATCACAAGTTTATTCATGCACTTAACTACCTTCTTGACTAGCAACTTGATTGCTTTCTTTTGTTTTAGAGAAAATGGAATAAGAAATTCTTATACATTGTGTATTGTTGATTTTGCAGATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAAATTCCTCTTTAACTTCTTCTCCCTCACTATCCTCGGCGCTGATCCATCTGTCTCCCCAGAAATCGCCAATTCTGGCTACATCTTTCTTGAT</genome_strand>
        <mrna_strand>CCTTGACTAGCCCTCCCTCAAACTCTCCTTTTTCACCAATCTCACTCTCCAAATAGTATTTTCTAGGTTTCATAGTGATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCGAAAAAAAAAAGAAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAAATTCCTCTTTAACTTCTTCTCCCTCACTATCCTCGGCGCTGATCCATCTGTCTCCCCAGAAATCGCCAATTCTGGCTACATCTTTCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318112" ref_strand="+" ref_description="SGN-E318112 [cTOA-29-L9]">
      <seq>cttgactagccctccctcaaactctcctttttcaccaatctcactctccaaatagtattttctaggtttcatagtgataagcacatccacacaagagctatgaaatttctgaaacaaacgttacaatagacacacggcgtatttatttccctcaagcaatcgtatccccttagcagatcgaaaaaaaaaagaagataccgataatgaattctgctcctctatcaactccggcgccggttactctgcccgtccgttcgattccgggcagctacggattgccgttagtagggccaatcgcggatcgattagactacttctggttccaaaaaccggaaaacttcttcaccaagagaatggaaaagcacaagagcacggttttcagaacgaacgtgccgccgtgttttccgtttttcggtagtgtgaatccaaatgtggtggcggttttagatgtgaaatcgttttcgcatctgtttgatatggagattgtagagaaagctaatgtgcttgttggggatttcatgcccagtgttgtttatactggagatatgcgtgtttgtgcttatctcgatacttctgaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="24761" stop="25939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25061" g_stop="25639" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E318112" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25061" e_stop="25639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGACTAGCCCTCCCTCAAACTCTCCTTTTTCACCAATCTCACTCTCCAAATAGTATTTTCTAGGTTTCATAGTGATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCG-AAAAAAAAA-AAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCT</genome_strand>
        <mrna_strand>CTTGACTAGCCCTCCCTCAAACTCTCCTTTTTCACCAATCTCACTCTCCAAATAGTATTTTCTAGGTTTCATAGTGATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCGAAAAAAAAAAGAAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340801" ref_strand="+" ref_description="SGN-E340801 [cTOF-5-M24]">
      <seq>tcaaactctcctttttcaccaatctcactctccaaatagtattttctaggtttcatagtgataagcacatccacacaagagctatgaaatttctgaaacaaacgttacaatagacacacggcgtatttatttccctcaagcaatcgtatccccttagcagatcgaaaaaaaaaagaagataccgataatgaattctgctcctctatcaactccggcgccggttactctgcccgtccgttcgattccgggcagctacggattgccgttagtagggccaatcgcggatcgattagactacttctggttccaaaaaccggaaaacttcttcaccaagagaatggaaaagcacaagagcacggttttcagaacgaacgtgccgccgtgttttccgtttttcggtagtgtgaatccaaatgtggtggcggttttagatgtgaaatcgttttcgcatctgtttgatatggagattgtagagaaagctaatgtgcttgttggggatttcatgcccagtgttgtttatactggagatatgcgtgtttgtgcttatctcgatacttctgaacctaaacatgcccagattaagaatttttcacaggatattctaaaaagaggctcaaaaacatgggtgcctacactacttaaagagcttgatacaatgtttacaacttttgaagcagatctttcaaaatccaatacagcttctcttcttcctgcactccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="24777" stop="30620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25077" g_stop="25651" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25652" i_stop="30174" i_length="4523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30175" g_stop="30320" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="723" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E340801" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25077" e_stop="25651"/>
          <exon e_start="30175" e_stop="30320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTCTCCTTTTTCACCAATCTCACTCTCCAAATAGTATTTTCTAGGTTTCATAGTGATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCG-AAAAAAAAA-AAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAGGTACACTTTTTCATCTCCCTGAATTATGCAAAAATCAACCATGAAAATTGTTTGAACACAGACTTGTTAGTTGAATTTCGGATTAGAAAAAACTTCCAAAAACATATTTTCACCGACAGAAATTCATAAATATCTCTGATTTGTATTCATGTGTAAACACAATTTCAATAGTATCTACTCGAATTCACACGATTTTTTTCGAGGCTTGCGCTCAAAGTCCGTTAAAATCTGTTTGGATTGACTTAAAAAGATAGATCAAATCTACTTTTAATTGAATTTTTAATTTTTAAAAGTAATTGATAAACATAAAAAAATATTTAAAATAAATTACAAAGTAAAATAAAAATTAACTTAAAATAAATTAGAAATCAAAAATAAACTTTTTATATTTTGATTATAAAATTATTTTAATTTGATTTTTTTATTTTTAACTTAAAAACTATTTTTTTAAAGTTAAATCTAAACTGGTTAATTTGGGGAAAGGTGATTAATATGTTGAATATCAAAATTAAGGTTTTTTTTAAAGAAAAATTATAATTAAGTTTTTTAATTTCTGACATAAACAAAAATAAAGATTCTTATAAAGTGATGTGACAAATTAAAATTTGAATGATATTTTTTAACCGAAGTAAAATTCTGGCTCCGCATATTCCAAATGCATTCCACGATGCAAAATGTTGTTTTCCTTTTGGCTGTTGAGAGTCCTCGTACTATGATTCGATAATTTAATAGTAGTGGGGTAATGAGGAGATTGTTATAGCCTATAGGATTGCTGCACGTATTAAGTTTAAATCAATTAAGATATTTGGGATTAAAATTTTTCGCGGTCCTTCGAGATGACTTAGTTAGTTTAGAGGATATCATTTAGTTAGTTTAGAGGATAGTTGTTTATACGGATGACTCGAAATTGATTCTTCCTCAATAACTTCTGAGTCGAGCTTGTCGCATAGGGCTGCTTAGTGCAGTTTACACTCCCTGTGTGGTTTGCAGGCTATTACATAGTGGGAGTTTACCCAATGCACACAGAGTGCTCACCCAAAAAGGGCAGAGGCTATGGCAGAAGTTGTAGCGATTGCGAGTTATTTTGGGGTTAAAAAGAAAAGAAAAAAAATTCTGTGACATTTAAAAATTTATTATAATTTCGTCGACTATAGGCTAAATGTTTATACAATGAAAATAAATTTGTGTTATGAGGATTAATTCAAAATAGATAAATTTAAATTGAATCATTTTATTTTAGTTGATTTGGGAAATTCCTAACTTAATGAGGGTAATTTTCTTTATTATTGAATATGTTGATAATAATAGGTGTATATTTGATTTTCTAAAATTTTCACCATTTCGTAATTTAATCATAAAAATTAGAAAATATCTGACGGAGATTAAAAGGTCTTTGTAAGCTAGCTTCAGCCATTCCTTTACATTTTGTCCTCACAATGAAGAAAATAGTATGATTTGATCACTTGCAGATTAAAAATAGTAGAAGAAAATGACTACAAATGACAATTGATTTTGATACTCTAAGTCGATAACAAAGTTATCTCAAAATTATAGTCTTGAAATTTATTTATTTTACTTTTTAGATGAGATCAAATAACATTAAATTTGAGGTATAATTTTTTCTTAAATTTAGTTATCTCTTTAATTAAATAAAGCACTATAAATTTAATTTTAAATATAATAGTGAGATATCTTTATCTTATGAACCAAATATTTGAAAATATTAGCACAGGTGCCAACATTTTACTAGTAATGACATTGAATATCTCCTTTCAGTCTTCACATCGTTTAAATACTATACAAAATTATAGTATCAAATTAAATTAATATGATTTTTTTTTTTGGATTATGAATTCGCAATTTGAGTCTCTTAAATTGTATATTTTTCTTCATGATAACTTCACAAATTATGACTACTATCAAAAGTTTCAGTTTTTATACAATCCTACCAGATTTCTTAGTTAATATTATCAATTTATTATTTCCAATGTATTTACGTAAATTTCCCATAAGAAAAAAGTTCCAATCATTATAAAAGCAACTAATCTTTTGCATTGCATTATAATAACAGGAGGGGAAGATGTTTATGAATTGTTTTTTGGGAAAACTACTTGATAAGACCACATTCATATCATATATACTAATTCTATCTGTACTTTCTGATAACTATACATATTTTACTTAGCGGAATTAGATATTTTAATGAGGGTTTAAAATCTGAGAAGTAAACATACGAACTAGTGGGAGGGGGTTCGACATCTATTGTATATATCTAAAAAATAATTTTAATCATGTATAAATAGTAATACTTTTTCACCGACTACATCCGCCCCTGATCTTACTATCAATTAAGAATTTTCTATCATATATTGAGAAACATACACCTAGTTACATATATTTTTGCTATCAGAAATATAAAAATAGAGAAAGGTGAACAAGATTGTCATGCATCTCAGATAAATATGAATCACACCAAATACATGTATATCAATTTAGTGTGATTCAAATATATCTAGGATACCAAATAAATAGAAAAGTAACGAGCGAAATTTGTTATATATTTCATATACATGCGAATCCAATTGTAATCCTCGATGAGTCTGAATTGGATATGCCTTGTTTTGTAACTCTTTGGAGAAATCACTTACATCTTAATAATATTACTCACGTCTTATGAACACTATACACTCTTTTGCTTTAATTTATGTGACATTTTTTTCTTTCTTGAGAGTCAAATCTAAGTTTGATCAAGAATTTGCATATGAAAATTTTAATTCTTTTGAATGAAATTTATATATATTTGTAAACTACGTAAAAAATATTAAAATAAATTACAATATTTAAAAATTTATTAAAAAATTTAAATAAAATAAATTTATTTAAATCTTTAAATTTAAATCACGTAAATTAAAGGAGTATCAAGGACCACGGGATCATGTGCATGTTGTCCTAAAGCTACTATTGGGCCAAGTCACAAATTTGTCTTACGTATTATCCTCGTATTATTATTGGGATATAGATGACAAGTGAGCTGACATTTCAGTGTAACAACCAGTCTAGGAGCGTCCACATTTTATACATGGCAAGTTAGCAACAATCAATGTGAAAATATCCACCTTAAATCACTTGTAGATTTTTTTTATTACTCCTTCTGATTTATAAAGAATCTTGACATGGAGTTTAAAAAGTATAAAAAGAGTTTTGAATCTTGTTATCCTAAATTAAAATTAAGTTAAATGTAAAAAATTGTTCTTTGATCTTCTCACCTTAAATATATCACGTAAAAAATTAAAATTAAAATATTACAATAAAAAAAAGAGATTAATTTTTCTATAACAGACTAAAAAAAGAAAGGAGACTATTTTTTTAAAACCAAAAAAATGTGTCTTTTCAAGAACATAAATATGACAGTTTTTAAATTTCTTTTGTTTGTTATTTGTGCATGATTTGACTCGTGTGGCTCTTATGCCTTGATAAAACCAATATTTGTCTAAGAATATCTTGTGTTTTGAGTTTTATTTCCTTCATTTAGTAATTGTTATTCTTTCCGTCTCTAATTACTTATTCATTTTAAATTGATTTGTTCCTATAAATCATAAAGTGAACTAATTAAAATTTTAAGATTTTTAAAAAATTCTGTCTTTTTCAATATAATAAATTGAGGGTTTAATAAGTAAATTCTTTTTTATTCTTTTTTTATTTGTCAAAATGAACAAGTAATTAGGAACAACTAAGAAAAAGAAAATGGACAAATAATTAGGGACAGAAGGACTATTATTCACTCTCTCCATTTCATTTTGATTGTTTGGTGAGTAACTTGTCCTTTTCGTGTTTTCCAATTGCATAAGATGCTTTAATCTATTGCATACGTTCAATCAACCGTTGTCTTGTATTAACTTGACATGAATTTAAGAAAGTAGAGAAGAGTTTTGAATATTGTGATCTTAAATTAAAGACATGTAGAATATACCAAAATGTTATTTAATTATGTGGCTTTCAACATGTTGTGTGTATACTTTGCCAAACATTTCCAAAAGCTATTAATAAGTTTGACCAACTTTAAAATCAATCCAAACAGACTCATTAAACAAAAAATATAAGCATTATGTATTGGTAGTTAAAACAATTTTGATACTCCTTTGTTTTGAATTTTATATAGGTCATGTAACCAGCATGAGTTGTAATACAGTTATGATGAGATTGCTTTACTCTTGATTAGAGGTTTTGAGGTTTCGAATTTTTAACTTTGAATATTGAAAAAATCCTGTTAGAAGCGCCACTCCAAATGGTCTACTTGTCATGTGTAATTCAAGCAGTAAAATCCACAGAATCAACCTAGATATGATGCATCAACATAGCTTATGTACATCTTCTTAGAATACGACTCTTTCCAGAACCCTGCATGATCACAAGTTTATTCATGCACTTAACTACCTTCTTGACTAGCAACTTGATTGCTTTCTTTTGTTTTAGAGAAAATGGAATAAGAAATTCTTATACATTGTGTATTGTTGATTTTGCAGATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAA</genome_strand>
        <mrna_strand>TCAAACTCTCCTTTTTCACCAATCTCACTCTCCAAATAGTATTTTCTAGGTTTCATAGTGATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCGAAAAAAAAAAGAAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331389" ref_strand="+" ref_description="SGN-E331389 [cTOD-9-M18]">
      <seq>tcaaactctcctttttcaccaatctcactctcgaaatagtattttctaggtttcatagtgataagcacatccacacaagagctatgaaatttctgaaacaaacgttacaatagacacacggcgtatttatttccctcaagcaatcgtatccccttagcagatcgaaaaaaaaaagaagataccgataatgaattctgctcctctatcaactccggcgccggttactctgcccgtccgttcgattccgggcagctacggattgccgttagtagggccaatcgcggatcgattagactacttctggttccaaaaaccggaaaacttcttcaccaagagaatggaaaagcacaagagcacggttttcagaacgaacgtgccgccgtgttttccgtttttcggtagtgtgaatccaaatgtggtggcggttttagatgtgaaatcgttttcgcatctgtttgatatggagattgtagagaaagctaatgtgcttgttggggatttcatgcccagtgttgtttatactggagatatgcgtgtttgtgcttatctcgatacttctgaacctaaacatgcccagattaagaatttttcacaggatattctaaaaagaggctcaaaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="24777" stop="30520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25077" g_stop="25651" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25652" i_stop="30174" i_length="4523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30175" g_stop="30220" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="623" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E331389" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25077" e_stop="25651"/>
          <exon e_start="30175" e_stop="30220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTCTCCTTTTTCACCAATCTCACTCTCCAAATAGTATTTTCTAGGTTTCATAGTGATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCG-AAAAAAAAA-AAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAGGTACACTTTTTCATCTCCCTGAATTATGCAAAAATCAACCATGAAAATTGTTTGAACACAGACTTGTTAGTTGAATTTCGGATTAGAAAAAACTTCCAAAAACATATTTTCACCGACAGAAATTCATAAATATCTCTGATTTGTATTCATGTGTAAACACAATTTCAATAGTATCTACTCGAATTCACACGATTTTTTTCGAGGCTTGCGCTCAAAGTCCGTTAAAATCTGTTTGGATTGACTTAAAAAGATAGATCAAATCTACTTTTAATTGAATTTTTAATTTTTAAAAGTAATTGATAAACATAAAAAAATATTTAAAATAAATTACAAAGTAAAATAAAAATTAACTTAAAATAAATTAGAAATCAAAAATAAACTTTTTATATTTTGATTATAAAATTATTTTAATTTGATTTTTTTATTTTTAACTTAAAAACTATTTTTTTAAAGTTAAATCTAAACTGGTTAATTTGGGGAAAGGTGATTAATATGTTGAATATCAAAATTAAGGTTTTTTTTAAAGAAAAATTATAATTAAGTTTTTTAATTTCTGACATAAACAAAAATAAAGATTCTTATAAAGTGATGTGACAAATTAAAATTTGAATGATATTTTTTAACCGAAGTAAAATTCTGGCTCCGCATATTCCAAATGCATTCCACGATGCAAAATGTTGTTTTCCTTTTGGCTGTTGAGAGTCCTCGTACTATGATTCGATAATTTAATAGTAGTGGGGTAATGAGGAGATTGTTATAGCCTATAGGATTGCTGCACGTATTAAGTTTAAATCAATTAAGATATTTGGGATTAAAATTTTTCGCGGTCCTTCGAGATGACTTAGTTAGTTTAGAGGATATCATTTAGTTAGTTTAGAGGATAGTTGTTTATACGGATGACTCGAAATTGATTCTTCCTCAATAACTTCTGAGTCGAGCTTGTCGCATAGGGCTGCTTAGTGCAGTTTACACTCCCTGTGTGGTTTGCAGGCTATTACATAGTGGGAGTTTACCCAATGCACACAGAGTGCTCACCCAAAAAGGGCAGAGGCTATGGCAGAAGTTGTAGCGATTGCGAGTTATTTTGGGGTTAAAAAGAAAAGAAAAAAAATTCTGTGACATTTAAAAATTTATTATAATTTCGTCGACTATAGGCTAAATGTTTATACAATGAAAATAAATTTGTGTTATGAGGATTAATTCAAAATAGATAAATTTAAATTGAATCATTTTATTTTAGTTGATTTGGGAAATTCCTAACTTAATGAGGGTAATTTTCTTTATTATTGAATATGTTGATAATAATAGGTGTATATTTGATTTTCTAAAATTTTCACCATTTCGTAATTTAATCATAAAAATTAGAAAATATCTGACGGAGATTAAAAGGTCTTTGTAAGCTAGCTTCAGCCATTCCTTTACATTTTGTCCTCACAATGAAGAAAATAGTATGATTTGATCACTTGCAGATTAAAAATAGTAGAAGAAAATGACTACAAATGACAATTGATTTTGATACTCTAAGTCGATAACAAAGTTATCTCAAAATTATAGTCTTGAAATTTATTTATTTTACTTTTTAGATGAGATCAAATAACATTAAATTTGAGGTATAATTTTTTCTTAAATTTAGTTATCTCTTTAATTAAATAAAGCACTATAAATTTAATTTTAAATATAATAGTGAGATATCTTTATCTTATGAACCAAATATTTGAAAATATTAGCACAGGTGCCAACATTTTACTAGTAATGACATTGAATATCTCCTTTCAGTCTTCACATCGTTTAAATACTATACAAAATTATAGTATCAAATTAAATTAATATGATTTTTTTTTTTGGATTATGAATTCGCAATTTGAGTCTCTTAAATTGTATATTTTTCTTCATGATAACTTCACAAATTATGACTACTATCAAAAGTTTCAGTTTTTATACAATCCTACCAGATTTCTTAGTTAATATTATCAATTTATTATTTCCAATGTATTTACGTAAATTTCCCATAAGAAAAAAGTTCCAATCATTATAAAAGCAACTAATCTTTTGCATTGCATTATAATAACAGGAGGGGAAGATGTTTATGAATTGTTTTTTGGGAAAACTACTTGATAAGACCACATTCATATCATATATACTAATTCTATCTGTACTTTCTGATAACTATACATATTTTACTTAGCGGAATTAGATATTTTAATGAGGGTTTAAAATCTGAGAAGTAAACATACGAACTAGTGGGAGGGGGTTCGACATCTATTGTATATATCTAAAAAATAATTTTAATCATGTATAAATAGTAATACTTTTTCACCGACTACATCCGCCCCTGATCTTACTATCAATTAAGAATTTTCTATCATATATTGAGAAACATACACCTAGTTACATATATTTTTGCTATCAGAAATATAAAAATAGAGAAAGGTGAACAAGATTGTCATGCATCTCAGATAAATATGAATCACACCAAATACATGTATATCAATTTAGTGTGATTCAAATATATCTAGGATACCAAATAAATAGAAAAGTAACGAGCGAAATTTGTTATATATTTCATATACATGCGAATCCAATTGTAATCCTCGATGAGTCTGAATTGGATATGCCTTGTTTTGTAACTCTTTGGAGAAATCACTTACATCTTAATAATATTACTCACGTCTTATGAACACTATACACTCTTTTGCTTTAATTTATGTGACATTTTTTTCTTTCTTGAGAGTCAAATCTAAGTTTGATCAAGAATTTGCATATGAAAATTTTAATTCTTTTGAATGAAATTTATATATATTTGTAAACTACGTAAAAAATATTAAAATAAATTACAATATTTAAAAATTTATTAAAAAATTTAAATAAAATAAATTTATTTAAATCTTTAAATTTAAATCACGTAAATTAAAGGAGTATCAAGGACCACGGGATCATGTGCATGTTGTCCTAAAGCTACTATTGGGCCAAGTCACAAATTTGTCTTACGTATTATCCTCGTATTATTATTGGGATATAGATGACAAGTGAGCTGACATTTCAGTGTAACAACCAGTCTAGGAGCGTCCACATTTTATACATGGCAAGTTAGCAACAATCAATGTGAAAATATCCACCTTAAATCACTTGTAGATTTTTTTTATTACTCCTTCTGATTTATAAAGAATCTTGACATGGAGTTTAAAAAGTATAAAAAGAGTTTTGAATCTTGTTATCCTAAATTAAAATTAAGTTAAATGTAAAAAATTGTTCTTTGATCTTCTCACCTTAAATATATCACGTAAAAAATTAAAATTAAAATATTACAATAAAAAAAAGAGATTAATTTTTCTATAACAGACTAAAAAAAGAAAGGAGACTATTTTTTTAAAACCAAAAAAATGTGTCTTTTCAAGAACATAAATATGACAGTTTTTAAATTTCTTTTGTTTGTTATTTGTGCATGATTTGACTCGTGTGGCTCTTATGCCTTGATAAAACCAATATTTGTCTAAGAATATCTTGTGTTTTGAGTTTTATTTCCTTCATTTAGTAATTGTTATTCTTTCCGTCTCTAATTACTTATTCATTTTAAATTGATTTGTTCCTATAAATCATAAAGTGAACTAATTAAAATTTTAAGATTTTTAAAAAATTCTGTCTTTTTCAATATAATAAATTGAGGGTTTAATAAGTAAATTCTTTTTTATTCTTTTTTTATTTGTCAAAATGAACAAGTAATTAGGAACAACTAAGAAAAAGAAAATGGACAAATAATTAGGGACAGAAGGACTATTATTCACTCTCTCCATTTCATTTTGATTGTTTGGTGAGTAACTTGTCCTTTTCGTGTTTTCCAATTGCATAAGATGCTTTAATCTATTGCATACGTTCAATCAACCGTTGTCTTGTATTAACTTGACATGAATTTAAGAAAGTAGAGAAGAGTTTTGAATATTGTGATCTTAAATTAAAGACATGTAGAATATACCAAAATGTTATTTAATTATGTGGCTTTCAACATGTTGTGTGTATACTTTGCCAAACATTTCCAAAAGCTATTAATAAGTTTGACCAACTTTAAAATCAATCCAAACAGACTCATTAAACAAAAAATATAAGCATTATGTATTGGTAGTTAAAACAATTTTGATACTCCTTTGTTTTGAATTTTATATAGGTCATGTAACCAGCATGAGTTGTAATACAGTTATGATGAGATTGCTTTACTCTTGATTAGAGGTTTTGAGGTTTCGAATTTTTAACTTTGAATATTGAAAAAATCCTGTTAGAAGCGCCACTCCAAATGGTCTACTTGTCATGTGTAATTCAAGCAGTAAAATCCACAGAATCAACCTAGATATGATGCATCAACATAGCTTATGTACATCTTCTTAGAATACGACTCTTTCCAGAACCCTGCATGATCACAAGTTTATTCATGCACTTAACTACCTTCTTGACTAGCAACTTGATTGCTTTCTTTTGTTTTAGAGAAAATGGAATAAGAAATTCTTATACATTGTGTATTGTTGATTTTGCAGATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACAT</genome_strand>
        <mrna_strand>TCAAACTCTCCTTTTTCACCAATCTCACTCTCGAAATAGTATTTTCTAGGTTTCATAGTGATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCGAAAAAAAAAAGAAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747201" ref_strand="+" ref_description="SGN-E747201 [GI|7677377]">
      <seq>accaatctcactctccaaatagtattttctaggtttcatagtgataagcacatccacacaagagctatgaaatttctgaaacaaacgttacaatagacacacggcgtatttatttccctcaagcaatcgtatccccttagcagatcgaaaaaaaaaaaagataccgataatgaattctgctcctctatcaactccggcgccggttactctgcccgtccgttcgattccgggcagctacggattgccgttagtagggccaatcgcggatcgattagactacttctggttccaaaaaccggaaaacttcttcaccaagagaatggaaaagcacaagagcacggttttcagaacgaacgtgccgccgtgttttccgtttttcggtagtgtgaatccaaatgtggtggcggttttagatgtgaaatcgttttcgcatctgtttgatatggagattgtagagaaagctaatgtgcttgttggggatttcatgcccagtgttgtttatactggagatatgcgtgtttgtgcttatctcgatacttctgaacctaaacatgcccagattaagaatttttcacaggatattctaaaaagaggctcaaaaacatgggtgcctacactacttaaagagcttgatacaatgtttacaacttttgaagcagatctttcaaaatccaatacagcttctcttcttcctgcactccaaaaattcctctttaacttcttctccctcactatcctcggcgctgattcatctgtctccccagaaatcgccaattctggctacatctttcttgattcatggctagctattcaattagcacctactgtcagcattggtgtccttcaacctcttgaagaaattttagtccattcttttgcataccctttttttcttgtcaaaggtaattatgaaaaactcgttcaattcgtcaaaaatgaagccaaggaagttttaagcagggcacaaacagagtttcaactcacagaacaagaagccattcataaccttttgttcattcttgggttcaatgcttttggtggcttctccattttcttgccaactcttttgggaaatcttggagatgagaaaaacgcggatatgcaagagaaactgagaaaagaagtgagagacaaagtcggcgtaaatccagaaaacttgagttttgaaagtgttaaagaaatggaacttgttcagtcttttgtttatgaaacacttaggcttagtccaccagtaccaagtcaatatgcaagagcaagaaaagattttaaactgagttcacatgattcagtttacgaaatcaagaaaggggagcttctttgtggttatcagcctttagttatgaaagatccaaaggtgtttgatgaacctgaaaagtttgtgttggagagatttacaaaggaaaaagggaaagaattgctgaattatttgttttggtctaatggtccacaaactgggagacctactgaatcaaacaagcaatgtgctgctaaagatatggttactctaactgcttctttgattgtggcttacattttccaaaagtacgattctgtgagtttctcatctggttcactcacatctgtgaaaaaggctagttgagttctgggctgtgtagctgcaaaatctaagcttgctagacatgttgatcttaagtctcggtggctggcttttccttcctccccctattgtgtaatataatttcacaaataaaagttcaacatgagtgtacttattttctgttctgacttatgactattgtctatcctcttacaaattaagttggaacatgaatctaagttataattacagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="24794" stop="31728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25094" g_stop="25651" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25652" i_stop="30174" i_length="4523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30175" g_stop="31427" g_length="1253"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="1812" r_length="1253" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1813" polyA_stop="1840"/>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E747201" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1811</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25094" e_stop="25651"/>
          <exon e_start="30175" e_stop="31427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATCTCACTCTCCAAATAGTATTTTCTAGGTTTCATAGTGATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCG-AAAAAAAAAAAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAGGTACACTTTTTCATCTCCCTGAATTATGCAAAAATCAACCATGAAAATTGTTTGAACACAGACTTGTTAGTTGAATTTCGGATTAGAAAAAACTTCCAAAAACATATTTTCACCGACAGAAATTCATAAATATCTCTGATTTGTATTCATGTGTAAACACAATTTCAATAGTATCTACTCGAATTCACACGATTTTTTTCGAGGCTTGCGCTCAAAGTCCGTTAAAATCTGTTTGGATTGACTTAAAAAGATAGATCAAATCTACTTTTAATTGAATTTTTAATTTTTAAAAGTAATTGATAAACATAAAAAAATATTTAAAATAAATTACAAAGTAAAATAAAAATTAACTTAAAATAAATTAGAAATCAAAAATAAACTTTTTATATTTTGATTATAAAATTATTTTAATTTGATTTTTTTATTTTTAACTTAAAAACTATTTTTTTAAAGTTAAATCTAAACTGGTTAATTTGGGGAAAGGTGATTAATATGTTGAATATCAAAATTAAGGTTTTTTTTAAAGAAAAATTATAATTAAGTTTTTTAATTTCTGACATAAACAAAAATAAAGATTCTTATAAAGTGATGTGACAAATTAAAATTTGAATGATATTTTTTAACCGAAGTAAAATTCTGGCTCCGCATATTCCAAATGCATTCCACGATGCAAAATGTTGTTTTCCTTTTGGCTGTTGAGAGTCCTCGTACTATGATTCGATAATTTAATAGTAGTGGGGTAATGAGGAGATTGTTATAGCCTATAGGATTGCTGCACGTATTAAGTTTAAATCAATTAAGATATTTGGGATTAAAATTTTTCGCGGTCCTTCGAGATGACTTAGTTAGTTTAGAGGATATCATTTAGTTAGTTTAGAGGATAGTTGTTTATACGGATGACTCGAAATTGATTCTTCCTCAATAACTTCTGAGTCGAGCTTGTCGCATAGGGCTGCTTAGTGCAGTTTACACTCCCTGTGTGGTTTGCAGGCTATTACATAGTGGGAGTTTACCCAATGCACACAGAGTGCTCACCCAAAAAGGGCAGAGGCTATGGCAGAAGTTGTAGCGATTGCGAGTTATTTTGGGGTTAAAAAGAAAAGAAAAAAAATTCTGTGACATTTAAAAATTTATTATAATTTCGTCGACTATAGGCTAAATGTTTATACAATGAAAATAAATTTGTGTTATGAGGATTAATTCAAAATAGATAAATTTAAATTGAATCATTTTATTTTAGTTGATTTGGGAAATTCCTAACTTAATGAGGGTAATTTTCTTTATTATTGAATATGTTGATAATAATAGGTGTATATTTGATTTTCTAAAATTTTCACCATTTCGTAATTTAATCATAAAAATTAGAAAATATCTGACGGAGATTAAAAGGTCTTTGTAAGCTAGCTTCAGCCATTCCTTTACATTTTGTCCTCACAATGAAGAAAATAGTATGATTTGATCACTTGCAGATTAAAAATAGTAGAAGAAAATGACTACAAATGACAATTGATTTTGATACTCTAAGTCGATAACAAAGTTATCTCAAAATTATAGTCTTGAAATTTATTTATTTTACTTTTTAGATGAGATCAAATAACATTAAATTTGAGGTATAATTTTTTCTTAAATTTAGTTATCTCTTTAATTAAATAAAGCACTATAAATTTAATTTTAAATATAATAGTGAGATATCTTTATCTTATGAACCAAATATTTGAAAATATTAGCACAGGTGCCAACATTTTACTAGTAATGACATTGAATATCTCCTTTCAGTCTTCACATCGTTTAAATACTATACAAAATTATAGTATCAAATTAAATTAATATGATTTTTTTTTTTGGATTATGAATTCGCAATTTGAGTCTCTTAAATTGTATATTTTTCTTCATGATAACTTCACAAATTATGACTACTATCAAAAGTTTCAGTTTTTATACAATCCTACCAGATTTCTTAGTTAATATTATCAATTTATTATTTCCAATGTATTTACGTAAATTTCCCATAAGAAAAAAGTTCCAATCATTATAAAAGCAACTAATCTTTTGCATTGCATTATAATAACAGGAGGGGAAGATGTTTATGAATTGTTTTTTGGGAAAACTACTTGATAAGACCACATTCATATCATATATACTAATTCTATCTGTACTTTCTGATAACTATACATATTTTACTTAGCGGAATTAGATATTTTAATGAGGGTTTAAAATCTGAGAAGTAAACATACGAACTAGTGGGAGGGGGTTCGACATCTATTGTATATATCTAAAAAATAATTTTAATCATGTATAAATAGTAATACTTTTTCACCGACTACATCCGCCCCTGATCTTACTATCAATTAAGAATTTTCTATCATATATTGAGAAACATACACCTAGTTACATATATTTTTGCTATCAGAAATATAAAAATAGAGAAAGGTGAACAAGATTGTCATGCATCTCAGATAAATATGAATCACACCAAATACATGTATATCAATTTAGTGTGATTCAAATATATCTAGGATACCAAATAAATAGAAAAGTAACGAGCGAAATTTGTTATATATTTCATATACATGCGAATCCAATTGTAATCCTCGATGAGTCTGAATTGGATATGCCTTGTTTTGTAACTCTTTGGAGAAATCACTTACATCTTAATAATATTACTCACGTCTTATGAACACTATACACTCTTTTGCTTTAATTTATGTGACATTTTTTTCTTTCTTGAGAGTCAAATCTAAGTTTGATCAAGAATTTGCATATGAAAATTTTAATTCTTTTGAATGAAATTTATATATATTTGTAAACTACGTAAAAAATATTAAAATAAATTACAATATTTAAAAATTTATTAAAAAATTTAAATAAAATAAATTTATTTAAATCTTTAAATTTAAATCACGTAAATTAAAGGAGTATCAAGGACCACGGGATCATGTGCATGTTGTCCTAAAGCTACTATTGGGCCAAGTCACAAATTTGTCTTACGTATTATCCTCGTATTATTATTGGGATATAGATGACAAGTGAGCTGACATTTCAGTGTAACAACCAGTCTAGGAGCGTCCACATTTTATACATGGCAAGTTAGCAACAATCAATGTGAAAATATCCACCTTAAATCACTTGTAGATTTTTTTTATTACTCCTTCTGATTTATAAAGAATCTTGACATGGAGTTTAAAAAGTATAAAAAGAGTTTTGAATCTTGTTATCCTAAATTAAAATTAAGTTAAATGTAAAAAATTGTTCTTTGATCTTCTCACCTTAAATATATCACGTAAAAAATTAAAATTAAAATATTACAATAAAAAAAAGAGATTAATTTTTCTATAACAGACTAAAAAAAGAAAGGAGACTATTTTTTTAAAACCAAAAAAATGTGTCTTTTCAAGAACATAAATATGACAGTTTTTAAATTTCTTTTGTTTGTTATTTGTGCATGATTTGACTCGTGTGGCTCTTATGCCTTGATAAAACCAATATTTGTCTAAGAATATCTTGTGTTTTGAGTTTTATTTCCTTCATTTAGTAATTGTTATTCTTTCCGTCTCTAATTACTTATTCATTTTAAATTGATTTGTTCCTATAAATCATAAAGTGAACTAATTAAAATTTTAAGATTTTTAAAAAATTCTGTCTTTTTCAATATAATAAATTGAGGGTTTAATAAGTAAATTCTTTTTTATTCTTTTTTTATTTGTCAAAATGAACAAGTAATTAGGAACAACTAAGAAAAAGAAAATGGACAAATAATTAGGGACAGAAGGACTATTATTCACTCTCTCCATTTCATTTTGATTGTTTGGTGAGTAACTTGTCCTTTTCGTGTTTTCCAATTGCATAAGATGCTTTAATCTATTGCATACGTTCAATCAACCGTTGTCTTGTATTAACTTGACATGAATTTAAGAAAGTAGAGAAGAGTTTTGAATATTGTGATCTTAAATTAAAGACATGTAGAATATACCAAAATGTTATTTAATTATGTGGCTTTCAACATGTTGTGTGTATACTTTGCCAAACATTTCCAAAAGCTATTAATAAGTTTGACCAACTTTAAAATCAATCCAAACAGACTCATTAAACAAAAAATATAAGCATTATGTATTGGTAGTTAAAACAATTTTGATACTCCTTTGTTTTGAATTTTATATAGGTCATGTAACCAGCATGAGTTGTAATACAGTTATGATGAGATTGCTTTACTCTTGATTAGAGGTTTTGAGGTTTCGAATTTTTAACTTTGAATATTGAAAAAATCCTGTTAGAAGCGCCACTCCAAATGGTCTACTTGTCATGTGTAATTCAAGCAGTAAAATCCACAGAATCAACCTAGATATGATGCATCAACATAGCTTATGTACATCTTCTTAGAATACGACTCTTTCCAGAACCCTGCATGATCACAAGTTTATTCATGCACTTAACTACCTTCTTGACTAGCAACTTGATTGCTTTCTTTTGTTTTAGAGAAAATGGAATAAGAAATTCTTATACATTGTGTATTGTTGATTTTGCAGATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAAATTCCTCTTTAACTTCTTCTCCCTCACTATCCTCGGCGCTGATCCATCTGTCTCCCCAGAAATCGCCAATTCTGGCTACATCTTTCTTGATTCATGGCTAGCTATTCAATTAGCACCTACTGTCAGCATTGGTGTCCTTCAACCTCTTGAAGAAATTTTAGTCCATTCTTTTGCATACCCTTTTTTTCTTGTCAAAGGTAATTATGAAAAACTCGTTCAATTCGTCAAAAATGAAGCCAAGGAAGTTTTAAGCAGGGCACAAACAGAGTTTCAACTCACAGAACAAGAAGCCATTCATAACCTTTTGTTCATTCTTGGGTTCAATGCTTTTGGTGGCTTCTCCATTTTCTTGCCAACTCTTTTGGGAAATCTTGGAGATGAGAAAAACGCGGATATGCAAGAGAAACTGAGAAAAGAAGTGAGAGACAAAGTCGGCGTAAATCCAGAAAACTTGAGTTTTGAAAGTGTTAAAGAAATGGAACTTGTTCAGTCTTTTGTTTATGAAACACTTAGGCTTAGTCCACCAGTACCAAGTCAATATGCAAGAGCAAGAAAAGATTTTAAACTGAGTTCACATGATTCAGTTTACGAAATCAAGAAAGGGGAGCTTCTTTGTGGTTATCAGCCTTTAGTTATGAAAGATCCAAAGGTGTTTGATGAACCTGAAAAGTTTGTGTTGGAGAGATTTACAAAGGAAAAAGGGAAAGAATTGCTGAATTATTTGTTTTGGTCTAATGGTCCACAAACTGGGAGACCTACTGAATCAAACAAGCAATGTGCTGCTAAAGATATGGTTACTCTAACTGCTTCTTTGATTGTGGCTTACATTTTCCAAAAGTACGATTCTGTGAGTTTCTCATCTGGTTCACTCACATCTGTGAAAAAGGCTAGTTGAGTTCTGGGCTGTGTAGCTGCAAAATCTAAGCTTGCTAGACATGTTGATCTTAAGTCTCGGTGGCTGGCTTTTCCTTCCTCCCCCTATTGTGTAATATAATTTCACAAATAAAAGTTCAACATGAGTGTACTTATTTTCTGTTCTGACTTATGACTATTGTCTATCCTCTTACAAATTAAGTTGGAACATGAATCTAAGTTATAATTACAGAA</genome_strand>
        <mrna_strand>ACCAATCTCACTCTCCAAATAGTATTTTCTAGGTTTCATAGTGATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCGAAAAAAAAAAAAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAAATTCCTCTTTAACTTCTTCTCCCTCACTATCCTCGGCGCTGATTCATCTGTCTCCCCAGAAATCGCCAATTCTGGCTACATCTTTCTTGATTCATGGCTAGCTATTCAATTAGCACCTACTGTCAGCATTGGTGTCCTTCAACCTCTTGAAGAAATTTTAGTCCATTCTTTTGCATACCCTTTTTTTCTTGTCAAAGGTAATTATGAAAAACTCGTTCAATTCGTCAAAAATGAAGCCAAGGAAGTTTTAAGCAGGGCACAAACAGAGTTTCAACTCACAGAACAAGAAGCCATTCATAACCTTTTGTTCATTCTTGGGTTCAATGCTTTTGGTGGCTTCTCCATTTTCTTGCCAACTCTTTTGGGAAATCTTGGAGATGAGAAAAACGCGGATATGCAAGAGAAACTGAGAAAAGAAGTGAGAGACAAAGTCGGCGTAAATCCAGAAAACTTGAGTTTTGAAAGTGTTAAAGAAATGGAACTTGTTCAGTCTTTTGTTTATGAAACACTTAGGCTTAGTCCACCAGTACCAAGTCAATATGCAAGAGCAAGAAAAGATTTTAAACTGAGTTCACATGATTCAGTTTACGAAATCAAGAAAGGGGAGCTTCTTTGTGGTTATCAGCCTTTAGTTATGAAAGATCCAAAGGTGTTTGATGAACCTGAAAAGTTTGTGTTGGAGAGATTTACAAAGGAAAAAGGGAAAGAATTGCTGAATTATTTGTTTTGGTCTAATGGTCCACAAACTGGGAGACCTACTGAATCAAACAAGCAATGTGCTGCTAAAGATATGGTTACTCTAACTGCTTCTTTGATTGTGGCTTACATTTTCCAAAAGTACGATTCTGTGAGTTTCTCATCTGGTTCACTCACATCTGTGAAAAAGGCTAGTTGAGTTCTGGGCTGTGTAGCTGCAAAATCTAAGCTTGCTAGACATGTTGATCTTAAGTCTCGGTGGCTGGCTTTTCCTTCCTCCCCCTATTGTGTAATATAATTTCACAAATAAAAGTTCAACATGAGTGTACTTATTTTCTGTTCTGACTTATGACTATTGTCTATCCTCTTACAAATTAAGTTGGAACATGAATCTAAGTTATAATTACAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302399" ref_strand="+" ref_description="SGN-E302399 [cLEW-27-F18]">
      <seq>accaatctcactctccaaatagtattttctaggtttcatagggataagcacatgcacacaagagctatgaaatttctgaaacaaacgttacaatagacacacggcgtatttatttccctcaagcaatcgtatccccttagcagatcgaaaaaaaaaagaagataccgataatgaattctgctcctctatcaactccggcgccggttactctgcccgtccgttcgattccgggcagctacggattgccgttagtagggccaatcgcggatcgattagactacttctggttccaaaaaccggaaaacttcttcaccaagagaatggaaaagcacaagagcacggttttcagaacgaacgtgccgccgtgttttccgtttttcggtagtgtgaatccaaatgtggtggcggttttagatgtgaaatcgttttcgcatctgtttgatatggagattgtagagaaagctaatgtgcttgttggggatttcatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="24794" stop="25881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25094" g_stop="25581" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E302399" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25094" e_stop="25581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATCTCACTCTCCAAATAGTATTTTCTAGGTTTCATAGTGATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCG-AAAAAAAAA-AAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCC</genome_strand>
        <mrna_strand>ACCAATCTCACTCTCCAAATAGTATTTTCTAGGTTTCATAGGGATAAGCACATGCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCGAAAAAAAAAAGAAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727660" ref_strand="+" ref_description="SGN-E727660 [LA15BD09]">
      <seq>cggtattttctaggtttcatagtgataagcacatccacacaagagctatgaaatttctgaaacaaacgttacaatagacacacggcgtatttatttccctcaagcaatcgtatccccttagcagatcgaaaaaaaaaagaagataccgataatgaattctgctcctctatcaactccggcgccggttactctgcccgtccgttcgattccgggcagctacggattgccgttagtagggccaatcgcggatcgattagactacttctggttccaaaaaccggaaaacttcttcaccaagagaatggaaaagcacaagagcacggttttcagaacgaacgtgccgccgtgttttccgtttttcggtagtgtgaatccaaatgtggtggcggttttagatgtgaaatcgttttcgcatctgtttgatatggagattgtagagaaagctaatgtgcttgttggggatttcatgcccagtgttgtttatactggagatatgcgtgtttgtgcttatctcgatacttctgaacctaaacatgcccagattaagaatttttcacaggatattctaaaaagaggctcaaaaacatgggtgcctacactacttaaagagcttgatacaatgtttacaacttttgaagcagatctttcaaaatccaatacagcttctcttcttcctgcactccaaaaattcctctttaacttcttctccctcactatcctcggcgctgatccatctgtctccccagaaatcgccaattctggctacatctttcttgattcatggctagctattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="24815" stop="30727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25113" g_stop="25651" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25652" i_stop="30174" i_length="4523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30175" g_stop="30427" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="794" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E727660" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25113" e_stop="25651"/>
          <exon e_start="30175" e_stop="30427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTATTTTCTAGGTTTCATAGTGATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCG-AAAAAAAAA-AAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAGGTACACTTTTTCATCTCCCTGAATTATGCAAAAATCAACCATGAAAATTGTTTGAACACAGACTTGTTAGTTGAATTTCGGATTAGAAAAAACTTCCAAAAACATATTTTCACCGACAGAAATTCATAAATATCTCTGATTTGTATTCATGTGTAAACACAATTTCAATAGTATCTACTCGAATTCACACGATTTTTTTCGAGGCTTGCGCTCAAAGTCCGTTAAAATCTGTTTGGATTGACTTAAAAAGATAGATCAAATCTACTTTTAATTGAATTTTTAATTTTTAAAAGTAATTGATAAACATAAAAAAATATTTAAAATAAATTACAAAGTAAAATAAAAATTAACTTAAAATAAATTAGAAATCAAAAATAAACTTTTTATATTTTGATTATAAAATTATTTTAATTTGATTTTTTTATTTTTAACTTAAAAACTATTTTTTTAAAGTTAAATCTAAACTGGTTAATTTGGGGAAAGGTGATTAATATGTTGAATATCAAAATTAAGGTTTTTTTTAAAGAAAAATTATAATTAAGTTTTTTAATTTCTGACATAAACAAAAATAAAGATTCTTATAAAGTGATGTGACAAATTAAAATTTGAATGATATTTTTTAACCGAAGTAAAATTCTGGCTCCGCATATTCCAAATGCATTCCACGATGCAAAATGTTGTTTTCCTTTTGGCTGTTGAGAGTCCTCGTACTATGATTCGATAATTTAATAGTAGTGGGGTAATGAGGAGATTGTTATAGCCTATAGGATTGCTGCACGTATTAAGTTTAAATCAATTAAGATATTTGGGATTAAAATTTTTCGCGGTCCTTCGAGATGACTTAGTTAGTTTAGAGGATATCATTTAGTTAGTTTAGAGGATAGTTGTTTATACGGATGACTCGAAATTGATTCTTCCTCAATAACTTCTGAGTCGAGCTTGTCGCATAGGGCTGCTTAGTGCAGTTTACACTCCCTGTGTGGTTTGCAGGCTATTACATAGTGGGAGTTTACCCAATGCACACAGAGTGCTCACCCAAAAAGGGCAGAGGCTATGGCAGAAGTTGTAGCGATTGCGAGTTATTTTGGGGTTAAAAAGAAAAGAAAAAAAATTCTGTGACATTTAAAAATTTATTATAATTTCGTCGACTATAGGCTAAATGTTTATACAATGAAAATAAATTTGTGTTATGAGGATTAATTCAAAATAGATAAATTTAAATTGAATCATTTTATTTTAGTTGATTTGGGAAATTCCTAACTTAATGAGGGTAATTTTCTTTATTATTGAATATGTTGATAATAATAGGTGTATATTTGATTTTCTAAAATTTTCACCATTTCGTAATTTAATCATAAAAATTAGAAAATATCTGACGGAGATTAAAAGGTCTTTGTAAGCTAGCTTCAGCCATTCCTTTACATTTTGTCCTCACAATGAAGAAAATAGTATGATTTGATCACTTGCAGATTAAAAATAGTAGAAGAAAATGACTACAAATGACAATTGATTTTGATACTCTAAGTCGATAACAAAGTTATCTCAAAATTATAGTCTTGAAATTTATTTATTTTACTTTTTAGATGAGATCAAATAACATTAAATTTGAGGTATAATTTTTTCTTAAATTTAGTTATCTCTTTAATTAAATAAAGCACTATAAATTTAATTTTAAATATAATAGTGAGATATCTTTATCTTATGAACCAAATATTTGAAAATATTAGCACAGGTGCCAACATTTTACTAGTAATGACATTGAATATCTCCTTTCAGTCTTCACATCGTTTAAATACTATACAAAATTATAGTATCAAATTAAATTAATATGATTTTTTTTTTTGGATTATGAATTCGCAATTTGAGTCTCTTAAATTGTATATTTTTCTTCATGATAACTTCACAAATTATGACTACTATCAAAAGTTTCAGTTTTTATACAATCCTACCAGATTTCTTAGTTAATATTATCAATTTATTATTTCCAATGTATTTACGTAAATTTCCCATAAGAAAAAAGTTCCAATCATTATAAAAGCAACTAATCTTTTGCATTGCATTATAATAACAGGAGGGGAAGATGTTTATGAATTGTTTTTTGGGAAAACTACTTGATAAGACCACATTCATATCATATATACTAATTCTATCTGTACTTTCTGATAACTATACATATTTTACTTAGCGGAATTAGATATTTTAATGAGGGTTTAAAATCTGAGAAGTAAACATACGAACTAGTGGGAGGGGGTTCGACATCTATTGTATATATCTAAAAAATAATTTTAATCATGTATAAATAGTAATACTTTTTCACCGACTACATCCGCCCCTGATCTTACTATCAATTAAGAATTTTCTATCATATATTGAGAAACATACACCTAGTTACATATATTTTTGCTATCAGAAATATAAAAATAGAGAAAGGTGAACAAGATTGTCATGCATCTCAGATAAATATGAATCACACCAAATACATGTATATCAATTTAGTGTGATTCAAATATATCTAGGATACCAAATAAATAGAAAAGTAACGAGCGAAATTTGTTATATATTTCATATACATGCGAATCCAATTGTAATCCTCGATGAGTCTGAATTGGATATGCCTTGTTTTGTAACTCTTTGGAGAAATCACTTACATCTTAATAATATTACTCACGTCTTATGAACACTATACACTCTTTTGCTTTAATTTATGTGACATTTTTTTCTTTCTTGAGAGTCAAATCTAAGTTTGATCAAGAATTTGCATATGAAAATTTTAATTCTTTTGAATGAAATTTATATATATTTGTAAACTACGTAAAAAATATTAAAATAAATTACAATATTTAAAAATTTATTAAAAAATTTAAATAAAATAAATTTATTTAAATCTTTAAATTTAAATCACGTAAATTAAAGGAGTATCAAGGACCACGGGATCATGTGCATGTTGTCCTAAAGCTACTATTGGGCCAAGTCACAAATTTGTCTTACGTATTATCCTCGTATTATTATTGGGATATAGATGACAAGTGAGCTGACATTTCAGTGTAACAACCAGTCTAGGAGCGTCCACATTTTATACATGGCAAGTTAGCAACAATCAATGTGAAAATATCCACCTTAAATCACTTGTAGATTTTTTTTATTACTCCTTCTGATTTATAAAGAATCTTGACATGGAGTTTAAAAAGTATAAAAAGAGTTTTGAATCTTGTTATCCTAAATTAAAATTAAGTTAAATGTAAAAAATTGTTCTTTGATCTTCTCACCTTAAATATATCACGTAAAAAATTAAAATTAAAATATTACAATAAAAAAAAGAGATTAATTTTTCTATAACAGACTAAAAAAAGAAAGGAGACTATTTTTTTAAAACCAAAAAAATGTGTCTTTTCAAGAACATAAATATGACAGTTTTTAAATTTCTTTTGTTTGTTATTTGTGCATGATTTGACTCGTGTGGCTCTTATGCCTTGATAAAACCAATATTTGTCTAAGAATATCTTGTGTTTTGAGTTTTATTTCCTTCATTTAGTAATTGTTATTCTTTCCGTCTCTAATTACTTATTCATTTTAAATTGATTTGTTCCTATAAATCATAAAGTGAACTAATTAAAATTTTAAGATTTTTAAAAAATTCTGTCTTTTTCAATATAATAAATTGAGGGTTTAATAAGTAAATTCTTTTTTATTCTTTTTTTATTTGTCAAAATGAACAAGTAATTAGGAACAACTAAGAAAAAGAAAATGGACAAATAATTAGGGACAGAAGGACTATTATTCACTCTCTCCATTTCATTTTGATTGTTTGGTGAGTAACTTGTCCTTTTCGTGTTTTCCAATTGCATAAGATGCTTTAATCTATTGCATACGTTCAATCAACCGTTGTCTTGTATTAACTTGACATGAATTTAAGAAAGTAGAGAAGAGTTTTGAATATTGTGATCTTAAATTAAAGACATGTAGAATATACCAAAATGTTATTTAATTATGTGGCTTTCAACATGTTGTGTGTATACTTTGCCAAACATTTCCAAAAGCTATTAATAAGTTTGACCAACTTTAAAATCAATCCAAACAGACTCATTAAACAAAAAATATAAGCATTATGTATTGGTAGTTAAAACAATTTTGATACTCCTTTGTTTTGAATTTTATATAGGTCATGTAACCAGCATGAGTTGTAATACAGTTATGATGAGATTGCTTTACTCTTGATTAGAGGTTTTGAGGTTTCGAATTTTTAACTTTGAATATTGAAAAAATCCTGTTAGAAGCGCCACTCCAAATGGTCTACTTGTCATGTGTAATTCAAGCAGTAAAATCCACAGAATCAACCTAGATATGATGCATCAACATAGCTTATGTACATCTTCTTAGAATACGACTCTTTCCAGAACCCTGCATGATCACAAGTTTATTCATGCACTTAACTACCTTCTTGACTAGCAACTTGATTGCTTTCTTTTGTTTTAGAGAAAATGGAATAAGAAATTCTTATACATTGTGTATTGTTGATTTTGCAGATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAAATTCCTCTTTAACTTCTTCTCCCTCACTATCCTCGGCGCTGATCCATCTGTCTCCCCAGAAATCGCCAATTCTGGCTACATCTTTCTTGATTCATGGCTAGCTATTC</genome_strand>
        <mrna_strand>CGGTATTTTCTAGGTTTCATAGTGATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCGAAAAAAAAAAGAAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAAATTCCTCTTTAACTTCTTCTCCCTCACTATCCTCGGCGCTGATCCATCTGTCTCCCCAGAAATCGCCAATTCTGGCTACATCTTTCTTGATTCATGGCTAGCTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705738" ref_strand="+" ref_description="SGN-E705738 [FA28AA07]">
      <seq>gtattttctaggtttcatagtgataagcacatccacacaagagctatgaaatttctgaaacaaacgttacaatagacacacggcgtatttatttccctcaagcaatcgtatccccttagcagatcgaaaaaaaaaagaagataccgataatgaattctgctcctctatcaactccggcgccggttactctgcccgtccgttcgattccgggcagctacggattgccgttagtagggccaatcgcggatcgattagactacttctggttccaaaaaccggaaaacttcttcaccaagagaatggaaaagcacaagagcacggttttcagaacgaacgtgccgccgtgttttccgtttttcggtagtgtgaatccaaatgtggtggcggttttagatgtgaaatcgttttcgcatctgtttgatatggagattgtagagaaagctaatgtgcttgttggggatttcatgcccagtgttgtttatactggagatatgcgtgtttgtgcttatctcgatacttctgaacctaaacatgcccagattaagaatttttcacaggatattctaaaaagaggctcaaaaacatgggtgcctacactacttaaagagcttgatacaatgtttacaacttttgaagcagatctttcaaaatccaatacagcttctcttcttcctgcactccaaaaattcctctttaacttcttctccctcactatcctcggcgctgatccatctgtctccccagaaatcgccaattctggctacatctttcttgattcatggctagctattcaattagcacctactgtcagcattggtgtccttcaacctcttgaagaaattttagtccattcttttgcataccctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="24815" stop="30804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25115" g_stop="25651" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25652" i_stop="30174" i_length="4523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30175" g_stop="30504" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="869" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E705738" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25115" e_stop="25651"/>
          <exon e_start="30175" e_stop="30504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTTTCTAGGTTTCATAGTGATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCG-AAAAAAAAA-AAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAGGTACACTTTTTCATCTCCCTGAATTATGCAAAAATCAACCATGAAAATTGTTTGAACACAGACTTGTTAGTTGAATTTCGGATTAGAAAAAACTTCCAAAAACATATTTTCACCGACAGAAATTCATAAATATCTCTGATTTGTATTCATGTGTAAACACAATTTCAATAGTATCTACTCGAATTCACACGATTTTTTTCGAGGCTTGCGCTCAAAGTCCGTTAAAATCTGTTTGGATTGACTTAAAAAGATAGATCAAATCTACTTTTAATTGAATTTTTAATTTTTAAAAGTAATTGATAAACATAAAAAAATATTTAAAATAAATTACAAAGTAAAATAAAAATTAACTTAAAATAAATTAGAAATCAAAAATAAACTTTTTATATTTTGATTATAAAATTATTTTAATTTGATTTTTTTATTTTTAACTTAAAAACTATTTTTTTAAAGTTAAATCTAAACTGGTTAATTTGGGGAAAGGTGATTAATATGTTGAATATCAAAATTAAGGTTTTTTTTAAAGAAAAATTATAATTAAGTTTTTTAATTTCTGACATAAACAAAAATAAAGATTCTTATAAAGTGATGTGACAAATTAAAATTTGAATGATATTTTTTAACCGAAGTAAAATTCTGGCTCCGCATATTCCAAATGCATTCCACGATGCAAAATGTTGTTTTCCTTTTGGCTGTTGAGAGTCCTCGTACTATGATTCGATAATTTAATAGTAGTGGGGTAATGAGGAGATTGTTATAGCCTATAGGATTGCTGCACGTATTAAGTTTAAATCAATTAAGATATTTGGGATTAAAATTTTTCGCGGTCCTTCGAGATGACTTAGTTAGTTTAGAGGATATCATTTAGTTAGTTTAGAGGATAGTTGTTTATACGGATGACTCGAAATTGATTCTTCCTCAATAACTTCTGAGTCGAGCTTGTCGCATAGGGCTGCTTAGTGCAGTTTACACTCCCTGTGTGGTTTGCAGGCTATTACATAGTGGGAGTTTACCCAATGCACACAGAGTGCTCACCCAAAAAGGGCAGAGGCTATGGCAGAAGTTGTAGCGATTGCGAGTTATTTTGGGGTTAAAAAGAAAAGAAAAAAAATTCTGTGACATTTAAAAATTTATTATAATTTCGTCGACTATAGGCTAAATGTTTATACAATGAAAATAAATTTGTGTTATGAGGATTAATTCAAAATAGATAAATTTAAATTGAATCATTTTATTTTAGTTGATTTGGGAAATTCCTAACTTAATGAGGGTAATTTTCTTTATTATTGAATATGTTGATAATAATAGGTGTATATTTGATTTTCTAAAATTTTCACCATTTCGTAATTTAATCATAAAAATTAGAAAATATCTGACGGAGATTAAAAGGTCTTTGTAAGCTAGCTTCAGCCATTCCTTTACATTTTGTCCTCACAATGAAGAAAATAGTATGATTTGATCACTTGCAGATTAAAAATAGTAGAAGAAAATGACTACAAATGACAATTGATTTTGATACTCTAAGTCGATAACAAAGTTATCTCAAAATTATAGTCTTGAAATTTATTTATTTTACTTTTTAGATGAGATCAAATAACATTAAATTTGAGGTATAATTTTTTCTTAAATTTAGTTATCTCTTTAATTAAATAAAGCACTATAAATTTAATTTTAAATATAATAGTGAGATATCTTTATCTTATGAACCAAATATTTGAAAATATTAGCACAGGTGCCAACATTTTACTAGTAATGACATTGAATATCTCCTTTCAGTCTTCACATCGTTTAAATACTATACAAAATTATAGTATCAAATTAAATTAATATGATTTTTTTTTTTGGATTATGAATTCGCAATTTGAGTCTCTTAAATTGTATATTTTTCTTCATGATAACTTCACAAATTATGACTACTATCAAAAGTTTCAGTTTTTATACAATCCTACCAGATTTCTTAGTTAATATTATCAATTTATTATTTCCAATGTATTTACGTAAATTTCCCATAAGAAAAAAGTTCCAATCATTATAAAAGCAACTAATCTTTTGCATTGCATTATAATAACAGGAGGGGAAGATGTTTATGAATTGTTTTTTGGGAAAACTACTTGATAAGACCACATTCATATCATATATACTAATTCTATCTGTACTTTCTGATAACTATACATATTTTACTTAGCGGAATTAGATATTTTAATGAGGGTTTAAAATCTGAGAAGTAAACATACGAACTAGTGGGAGGGGGTTCGACATCTATTGTATATATCTAAAAAATAATTTTAATCATGTATAAATAGTAATACTTTTTCACCGACTACATCCGCCCCTGATCTTACTATCAATTAAGAATTTTCTATCATATATTGAGAAACATACACCTAGTTACATATATTTTTGCTATCAGAAATATAAAAATAGAGAAAGGTGAACAAGATTGTCATGCATCTCAGATAAATATGAATCACACCAAATACATGTATATCAATTTAGTGTGATTCAAATATATCTAGGATACCAAATAAATAGAAAAGTAACGAGCGAAATTTGTTATATATTTCATATACATGCGAATCCAATTGTAATCCTCGATGAGTCTGAATTGGATATGCCTTGTTTTGTAACTCTTTGGAGAAATCACTTACATCTTAATAATATTACTCACGTCTTATGAACACTATACACTCTTTTGCTTTAATTTATGTGACATTTTTTTCTTTCTTGAGAGTCAAATCTAAGTTTGATCAAGAATTTGCATATGAAAATTTTAATTCTTTTGAATGAAATTTATATATATTTGTAAACTACGTAAAAAATATTAAAATAAATTACAATATTTAAAAATTTATTAAAAAATTTAAATAAAATAAATTTATTTAAATCTTTAAATTTAAATCACGTAAATTAAAGGAGTATCAAGGACCACGGGATCATGTGCATGTTGTCCTAAAGCTACTATTGGGCCAAGTCACAAATTTGTCTTACGTATTATCCTCGTATTATTATTGGGATATAGATGACAAGTGAGCTGACATTTCAGTGTAACAACCAGTCTAGGAGCGTCCACATTTTATACATGGCAAGTTAGCAACAATCAATGTGAAAATATCCACCTTAAATCACTTGTAGATTTTTTTTATTACTCCTTCTGATTTATAAAGAATCTTGACATGGAGTTTAAAAAGTATAAAAAGAGTTTTGAATCTTGTTATCCTAAATTAAAATTAAGTTAAATGTAAAAAATTGTTCTTTGATCTTCTCACCTTAAATATATCACGTAAAAAATTAAAATTAAAATATTACAATAAAAAAAAGAGATTAATTTTTCTATAACAGACTAAAAAAAGAAAGGAGACTATTTTTTTAAAACCAAAAAAATGTGTCTTTTCAAGAACATAAATATGACAGTTTTTAAATTTCTTTTGTTTGTTATTTGTGCATGATTTGACTCGTGTGGCTCTTATGCCTTGATAAAACCAATATTTGTCTAAGAATATCTTGTGTTTTGAGTTTTATTTCCTTCATTTAGTAATTGTTATTCTTTCCGTCTCTAATTACTTATTCATTTTAAATTGATTTGTTCCTATAAATCATAAAGTGAACTAATTAAAATTTTAAGATTTTTAAAAAATTCTGTCTTTTTCAATATAATAAATTGAGGGTTTAATAAGTAAATTCTTTTTTATTCTTTTTTTATTTGTCAAAATGAACAAGTAATTAGGAACAACTAAGAAAAAGAAAATGGACAAATAATTAGGGACAGAAGGACTATTATTCACTCTCTCCATTTCATTTTGATTGTTTGGTGAGTAACTTGTCCTTTTCGTGTTTTCCAATTGCATAAGATGCTTTAATCTATTGCATACGTTCAATCAACCGTTGTCTTGTATTAACTTGACATGAATTTAAGAAAGTAGAGAAGAGTTTTGAATATTGTGATCTTAAATTAAAGACATGTAGAATATACCAAAATGTTATTTAATTATGTGGCTTTCAACATGTTGTGTGTATACTTTGCCAAACATTTCCAAAAGCTATTAATAAGTTTGACCAACTTTAAAATCAATCCAAACAGACTCATTAAACAAAAAATATAAGCATTATGTATTGGTAGTTAAAACAATTTTGATACTCCTTTGTTTTGAATTTTATATAGGTCATGTAACCAGCATGAGTTGTAATACAGTTATGATGAGATTGCTTTACTCTTGATTAGAGGTTTTGAGGTTTCGAATTTTTAACTTTGAATATTGAAAAAATCCTGTTAGAAGCGCCACTCCAAATGGTCTACTTGTCATGTGTAATTCAAGCAGTAAAATCCACAGAATCAACCTAGATATGATGCATCAACATAGCTTATGTACATCTTCTTAGAATACGACTCTTTCCAGAACCCTGCATGATCACAAGTTTATTCATGCACTTAACTACCTTCTTGACTAGCAACTTGATTGCTTTCTTTTGTTTTAGAGAAAATGGAATAAGAAATTCTTATACATTGTGTATTGTTGATTTTGCAGATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAAATTCCTCTTTAACTTCTTCTCCCTCACTATCCTCGGCGCTGATCCATCTGTCTCCCCAGAAATCGCCAATTCTGGCTACATCTTTCTTGATTCATGGCTAGCTATTCAATTAGCACCTACTGTCAGCATTGGTGTCCTTCAACCTCTTGAAGAAATTTTAGTCCATTCTTTTGCATACCCTTTT</genome_strand>
        <mrna_strand>GTATTTTCTAGGTTTCATAGTGATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCGAAAAAAAAAAGAAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAAATTCCTCTTTAACTTCTTCTCCCTCACTATCCTCGGCGCTGATCCATCTGTCTCCCCAGAAATCGCCAATTCTGGCTACATCTTTCTTGATTCATGGCTAGCTATTCAATTAGCACCTACTGTCAGCATTGGTGTCCTTCAACCTCTTGAAGAAATTTTAGTCCATTCTTTTGCATACCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731541" ref_strand="+" ref_description="SGN-E731541 [LA27BG11]">
      <seq>gataagcacatccacacaagagctatgaaatttctgaaacaaacgttacaatagacacacggcgtatttatttccctcaagcaatcgtatccccttagcagatcgaaaaaaaaaagaagataccgataatgaattctgctcctctatcaactccggcgccggttactctgcccgtccgttcgattccgggcagctacggattgccgttagtagggccaatcgcggatcgattagactacttctggttccaaaaaccggaaaacttcttcaccaagagaatggaaaagcacaagagcacggttttcagaacgaaagtgccgccgtgttttccgtttttcggtagtgtgaatccaaatgtggtggcggttttagatgtgaaatcgttttcgcatctgtttgatatggagattgtagagaaagctaatgtgcttgttggggatttcatgcccagtgttgtttatactggagatatgcgtgtttgtgcttatctcgatacttctgaacctaaacatgcccagattaagaatttttcacaggatattctaaaaagaggctcaaaaacatgggtgcctacactacttaaagagcttgatacaatgtttacaacttttgaagcagatctttcaaaatccaatacagcttctcttcttcctgcactccaaaaaattccctctttaactttttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="24836" stop="30642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25136" g_stop="25651" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25652" i_stop="30174" i_length="4523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30175" g_stop="30342" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="688" r_length="170" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E731541" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25136" e_stop="25651"/>
          <exon e_start="30175" e_stop="30342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCG-AAAAAAAAA-AAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAGGTACACTTTTTCATCTCCCTGAATTATGCAAAAATCAACCATGAAAATTGTTTGAACACAGACTTGTTAGTTGAATTTCGGATTAGAAAAAACTTCCAAAAACATATTTTCACCGACAGAAATTCATAAATATCTCTGATTTGTATTCATGTGTAAACACAATTTCAATAGTATCTACTCGAATTCACACGATTTTTTTCGAGGCTTGCGCTCAAAGTCCGTTAAAATCTGTTTGGATTGACTTAAAAAGATAGATCAAATCTACTTTTAATTGAATTTTTAATTTTTAAAAGTAATTGATAAACATAAAAAAATATTTAAAATAAATTACAAAGTAAAATAAAAATTAACTTAAAATAAATTAGAAATCAAAAATAAACTTTTTATATTTTGATTATAAAATTATTTTAATTTGATTTTTTTATTTTTAACTTAAAAACTATTTTTTTAAAGTTAAATCTAAACTGGTTAATTTGGGGAAAGGTGATTAATATGTTGAATATCAAAATTAAGGTTTTTTTTAAAGAAAAATTATAATTAAGTTTTTTAATTTCTGACATAAACAAAAATAAAGATTCTTATAAAGTGATGTGACAAATTAAAATTTGAATGATATTTTTTAACCGAAGTAAAATTCTGGCTCCGCATATTCCAAATGCATTCCACGATGCAAAATGTTGTTTTCCTTTTGGCTGTTGAGAGTCCTCGTACTATGATTCGATAATTTAATAGTAGTGGGGTAATGAGGAGATTGTTATAGCCTATAGGATTGCTGCACGTATTAAGTTTAAATCAATTAAGATATTTGGGATTAAAATTTTTCGCGGTCCTTCGAGATGACTTAGTTAGTTTAGAGGATATCATTTAGTTAGTTTAGAGGATAGTTGTTTATACGGATGACTCGAAATTGATTCTTCCTCAATAACTTCTGAGTCGAGCTTGTCGCATAGGGCTGCTTAGTGCAGTTTACACTCCCTGTGTGGTTTGCAGGCTATTACATAGTGGGAGTTTACCCAATGCACACAGAGTGCTCACCCAAAAAGGGCAGAGGCTATGGCAGAAGTTGTAGCGATTGCGAGTTATTTTGGGGTTAAAAAGAAAAGAAAAAAAATTCTGTGACATTTAAAAATTTATTATAATTTCGTCGACTATAGGCTAAATGTTTATACAATGAAAATAAATTTGTGTTATGAGGATTAATTCAAAATAGATAAATTTAAATTGAATCATTTTATTTTAGTTGATTTGGGAAATTCCTAACTTAATGAGGGTAATTTTCTTTATTATTGAATATGTTGATAATAATAGGTGTATATTTGATTTTCTAAAATTTTCACCATTTCGTAATTTAATCATAAAAATTAGAAAATATCTGACGGAGATTAAAAGGTCTTTGTAAGCTAGCTTCAGCCATTCCTTTACATTTTGTCCTCACAATGAAGAAAATAGTATGATTTGATCACTTGCAGATTAAAAATAGTAGAAGAAAATGACTACAAATGACAATTGATTTTGATACTCTAAGTCGATAACAAAGTTATCTCAAAATTATAGTCTTGAAATTTATTTATTTTACTTTTTAGATGAGATCAAATAACATTAAATTTGAGGTATAATTTTTTCTTAAATTTAGTTATCTCTTTAATTAAATAAAGCACTATAAATTTAATTTTAAATATAATAGTGAGATATCTTTATCTTATGAACCAAATATTTGAAAATATTAGCACAGGTGCCAACATTTTACTAGTAATGACATTGAATATCTCCTTTCAGTCTTCACATCGTTTAAATACTATACAAAATTATAGTATCAAATTAAATTAATATGATTTTTTTTTTTGGATTATGAATTCGCAATTTGAGTCTCTTAAATTGTATATTTTTCTTCATGATAACTTCACAAATTATGACTACTATCAAAAGTTTCAGTTTTTATACAATCCTACCAGATTTCTTAGTTAATATTATCAATTTATTATTTCCAATGTATTTACGTAAATTTCCCATAAGAAAAAAGTTCCAATCATTATAAAAGCAACTAATCTTTTGCATTGCATTATAATAACAGGAGGGGAAGATGTTTATGAATTGTTTTTTGGGAAAACTACTTGATAAGACCACATTCATATCATATATACTAATTCTATCTGTACTTTCTGATAACTATACATATTTTACTTAGCGGAATTAGATATTTTAATGAGGGTTTAAAATCTGAGAAGTAAACATACGAACTAGTGGGAGGGGGTTCGACATCTATTGTATATATCTAAAAAATAATTTTAATCATGTATAAATAGTAATACTTTTTCACCGACTACATCCGCCCCTGATCTTACTATCAATTAAGAATTTTCTATCATATATTGAGAAACATACACCTAGTTACATATATTTTTGCTATCAGAAATATAAAAATAGAGAAAGGTGAACAAGATTGTCATGCATCTCAGATAAATATGAATCACACCAAATACATGTATATCAATTTAGTGTGATTCAAATATATCTAGGATACCAAATAAATAGAAAAGTAACGAGCGAAATTTGTTATATATTTCATATACATGCGAATCCAATTGTAATCCTCGATGAGTCTGAATTGGATATGCCTTGTTTTGTAACTCTTTGGAGAAATCACTTACATCTTAATAATATTACTCACGTCTTATGAACACTATACACTCTTTTGCTTTAATTTATGTGACATTTTTTTCTTTCTTGAGAGTCAAATCTAAGTTTGATCAAGAATTTGCATATGAAAATTTTAATTCTTTTGAATGAAATTTATATATATTTGTAAACTACGTAAAAAATATTAAAATAAATTACAATATTTAAAAATTTATTAAAAAATTTAAATAAAATAAATTTATTTAAATCTTTAAATTTAAATCACGTAAATTAAAGGAGTATCAAGGACCACGGGATCATGTGCATGTTGTCCTAAAGCTACTATTGGGCCAAGTCACAAATTTGTCTTACGTATTATCCTCGTATTATTATTGGGATATAGATGACAAGTGAGCTGACATTTCAGTGTAACAACCAGTCTAGGAGCGTCCACATTTTATACATGGCAAGTTAGCAACAATCAATGTGAAAATATCCACCTTAAATCACTTGTAGATTTTTTTTATTACTCCTTCTGATTTATAAAGAATCTTGACATGGAGTTTAAAAAGTATAAAAAGAGTTTTGAATCTTGTTATCCTAAATTAAAATTAAGTTAAATGTAAAAAATTGTTCTTTGATCTTCTCACCTTAAATATATCACGTAAAAAATTAAAATTAAAATATTACAATAAAAAAAAGAGATTAATTTTTCTATAACAGACTAAAAAAAGAAAGGAGACTATTTTTTTAAAACCAAAAAAATGTGTCTTTTCAAGAACATAAATATGACAGTTTTTAAATTTCTTTTGTTTGTTATTTGTGCATGATTTGACTCGTGTGGCTCTTATGCCTTGATAAAACCAATATTTGTCTAAGAATATCTTGTGTTTTGAGTTTTATTTCCTTCATTTAGTAATTGTTATTCTTTCCGTCTCTAATTACTTATTCATTTTAAATTGATTTGTTCCTATAAATCATAAAGTGAACTAATTAAAATTTTAAGATTTTTAAAAAATTCTGTCTTTTTCAATATAATAAATTGAGGGTTTAATAAGTAAATTCTTTTTTATTCTTTTTTTATTTGTCAAAATGAACAAGTAATTAGGAACAACTAAGAAAAAGAAAATGGACAAATAATTAGGGACAGAAGGACTATTATTCACTCTCTCCATTTCATTTTGATTGTTTGGTGAGTAACTTGTCCTTTTCGTGTTTTCCAATTGCATAAGATGCTTTAATCTATTGCATACGTTCAATCAACCGTTGTCTTGTATTAACTTGACATGAATTTAAGAAAGTAGAGAAGAGTTTTGAATATTGTGATCTTAAATTAAAGACATGTAGAATATACCAAAATGTTATTTAATTATGTGGCTTTCAACATGTTGTGTGTATACTTTGCCAAACATTTCCAAAAGCTATTAATAAGTTTGACCAACTTTAAAATCAATCCAAACAGACTCATTAAACAAAAAATATAAGCATTATGTATTGGTAGTTAAAACAATTTTGATACTCCTTTGTTTTGAATTTTATATAGGTCATGTAACCAGCATGAGTTGTAATACAGTTATGATGAGATTGCTTTACTCTTGATTAGAGGTTTTGAGGTTTCGAATTTTTAACTTTGAATATTGAAAAAATCCTGTTAGAAGCGCCACTCCAAATGGTCTACTTGTCATGTGTAATTCAAGCAGTAAAATCCACAGAATCAACCTAGATATGATGCATCAACATAGCTTATGTACATCTTCTTAGAATACGACTCTTTCCAGAACCCTGCATGATCACAAGTTTATTCATGCACTTAACTACCTTCTTGACTAGCAACTTGATTGCTTTCTTTTGTTTTAGAGAAAATGGAATAAGAAATTCTTATACATTGTGTATTGTTGATTTTGCAGATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCC-AAAAATT-CCTCTTTAACTTCTTCTCC</genome_strand>
        <mrna_strand>GATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCGAAAAAAAAAAGAAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAAAGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAAAATTCCCTCTTTAACTTTTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728697" ref_strand="+" ref_description="SGN-E728697 [LA18CF10]">
      <seq>gataagcacatccacacaagagctatgaacatttctgaaacaaacgttacaatagacacacggcgtatcttatttccctcaagcaatcgtatccccttagcagatcgaaaaaaaaaagaagataccgataatgaattctgctcctctatcaactccggcgccggttactctgcccgtccgttcgattccgggcagctacggattgccgttagtagggccaatcgcggatcgattagactacttctggttccaaaaaccggaaaacttcttcaccaagagaatggaaaagcacaagagcacggttttcagaacgaacgtgccgccgagttttccgtttttcggtagtgcgaacccaaatgtggtggcggttttagatgtgaaatcgttttcgcatctgttcgatatggagattgtagagaaagctaatgtgcttgttggggatttcaagcccagtgtagttcatactggagatctgcgtgtttgtgcttatctcgatacttctgaacctaaacatgcccagattaagactttttcacaggatatgctaaaaagaggctcaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="24836" stop="30518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25136" g_stop="25651" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25652" i_stop="30174" i_length="4523">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30175" g_stop="30218" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="564" r_length="44" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E728697" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25136" e_stop="25651"/>
          <exon e_start="30175" e_stop="30218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAGCACATCCACACAAGAGCTATGAA-ATTTCTGAAACAAACGTTACAATAGACACACGGCGTAT-TTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCG-AAAAAAAAA-AAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAGGTACACTTTTTCATCTCCCTGAATTATGCAAAAATCAACCATGAAAATTGTTTGAACACAGACTTGTTAGTTGAATTTCGGATTAGAAAAAACTTCCAAAAACATATTTTCACCGACAGAAATTCATAAATATCTCTGATTTGTATTCATGTGTAAACACAATTTCAATAGTATCTACTCGAATTCACACGATTTTTTTCGAGGCTTGCGCTCAAAGTCCGTTAAAATCTGTTTGGATTGACTTAAAAAGATAGATCAAATCTACTTTTAATTGAATTTTTAATTTTTAAAAGTAATTGATAAACATAAAAAAATATTTAAAATAAATTACAAAGTAAAATAAAAATTAACTTAAAATAAATTAGAAATCAAAAATAAACTTTTTATATTTTGATTATAAAATTATTTTAATTTGATTTTTTTATTTTTAACTTAAAAACTATTTTTTTAAAGTTAAATCTAAACTGGTTAATTTGGGGAAAGGTGATTAATATGTTGAATATCAAAATTAAGGTTTTTTTTAAAGAAAAATTATAATTAAGTTTTTTAATTTCTGACATAAACAAAAATAAAGATTCTTATAAAGTGATGTGACAAATTAAAATTTGAATGATATTTTTTAACCGAAGTAAAATTCTGGCTCCGCATATTCCAAATGCATTCCACGATGCAAAATGTTGTTTTCCTTTTGGCTGTTGAGAGTCCTCGTACTATGATTCGATAATTTAATAGTAGTGGGGTAATGAGGAGATTGTTATAGCCTATAGGATTGCTGCACGTATTAAGTTTAAATCAATTAAGATATTTGGGATTAAAATTTTTCGCGGTCCTTCGAGATGACTTAGTTAGTTTAGAGGATATCATTTAGTTAGTTTAGAGGATAGTTGTTTATACGGATGACTCGAAATTGATTCTTCCTCAATAACTTCTGAGTCGAGCTTGTCGCATAGGGCTGCTTAGTGCAGTTTACACTCCCTGTGTGGTTTGCAGGCTATTACATAGTGGGAGTTTACCCAATGCACACAGAGTGCTCACCCAAAAAGGGCAGAGGCTATGGCAGAAGTTGTAGCGATTGCGAGTTATTTTGGGGTTAAAAAGAAAAGAAAAAAAATTCTGTGACATTTAAAAATTTATTATAATTTCGTCGACTATAGGCTAAATGTTTATACAATGAAAATAAATTTGTGTTATGAGGATTAATTCAAAATAGATAAATTTAAATTGAATCATTTTATTTTAGTTGATTTGGGAAATTCCTAACTTAATGAGGGTAATTTTCTTTATTATTGAATATGTTGATAATAATAGGTGTATATTTGATTTTCTAAAATTTTCACCATTTCGTAATTTAATCATAAAAATTAGAAAATATCTGACGGAGATTAAAAGGTCTTTGTAAGCTAGCTTCAGCCATTCCTTTACATTTTGTCCTCACAATGAAGAAAATAGTATGATTTGATCACTTGCAGATTAAAAATAGTAGAAGAAAATGACTACAAATGACAATTGATTTTGATACTCTAAGTCGATAACAAAGTTATCTCAAAATTATAGTCTTGAAATTTATTTATTTTACTTTTTAGATGAGATCAAATAACATTAAATTTGAGGTATAATTTTTTCTTAAATTTAGTTATCTCTTTAATTAAATAAAGCACTATAAATTTAATTTTAAATATAATAGTGAGATATCTTTATCTTATGAACCAAATATTTGAAAATATTAGCACAGGTGCCAACATTTTACTAGTAATGACATTGAATATCTCCTTTCAGTCTTCACATCGTTTAAATACTATACAAAATTATAGTATCAAATTAAATTAATATGATTTTTTTTTTTGGATTATGAATTCGCAATTTGAGTCTCTTAAATTGTATATTTTTCTTCATGATAACTTCACAAATTATGACTACTATCAAAAGTTTCAGTTTTTATACAATCCTACCAGATTTCTTAGTTAATATTATCAATTTATTATTTCCAATGTATTTACGTAAATTTCCCATAAGAAAAAAGTTCCAATCATTATAAAAGCAACTAATCTTTTGCATTGCATTATAATAACAGGAGGGGAAGATGTTTATGAATTGTTTTTTGGGAAAACTACTTGATAAGACCACATTCATATCATATATACTAATTCTATCTGTACTTTCTGATAACTATACATATTTTACTTAGCGGAATTAGATATTTTAATGAGGGTTTAAAATCTGAGAAGTAAACATACGAACTAGTGGGAGGGGGTTCGACATCTATTGTATATATCTAAAAAATAATTTTAATCATGTATAAATAGTAATACTTTTTCACCGACTACATCCGCCCCTGATCTTACTATCAATTAAGAATTTTCTATCATATATTGAGAAACATACACCTAGTTACATATATTTTTGCTATCAGAAATATAAAAATAGAGAAAGGTGAACAAGATTGTCATGCATCTCAGATAAATATGAATCACACCAAATACATGTATATCAATTTAGTGTGATTCAAATATATCTAGGATACCAAATAAATAGAAAAGTAACGAGCGAAATTTGTTATATATTTCATATACATGCGAATCCAATTGTAATCCTCGATGAGTCTGAATTGGATATGCCTTGTTTTGTAACTCTTTGGAGAAATCACTTACATCTTAATAATATTACTCACGTCTTATGAACACTATACACTCTTTTGCTTTAATTTATGTGACATTTTTTTCTTTCTTGAGAGTCAAATCTAAGTTTGATCAAGAATTTGCATATGAAAATTTTAATTCTTTTGAATGAAATTTATATATATTTGTAAACTACGTAAAAAATATTAAAATAAATTACAATATTTAAAAATTTATTAAAAAATTTAAATAAAATAAATTTATTTAAATCTTTAAATTTAAATCACGTAAATTAAAGGAGTATCAAGGACCACGGGATCATGTGCATGTTGTCCTAAAGCTACTATTGGGCCAAGTCACAAATTTGTCTTACGTATTATCCTCGTATTATTATTGGGATATAGATGACAAGTGAGCTGACATTTCAGTGTAACAACCAGTCTAGGAGCGTCCACATTTTATACATGGCAAGTTAGCAACAATCAATGTGAAAATATCCACCTTAAATCACTTGTAGATTTTTTTTATTACTCCTTCTGATTTATAAAGAATCTTGACATGGAGTTTAAAAAGTATAAAAAGAGTTTTGAATCTTGTTATCCTAAATTAAAATTAAGTTAAATGTAAAAAATTGTTCTTTGATCTTCTCACCTTAAATATATCACGTAAAAAATTAAAATTAAAATATTACAATAAAAAAAAGAGATTAATTTTTCTATAACAGACTAAAAAAAGAAAGGAGACTATTTTTTTAAAACCAAAAAAATGTGTCTTTTCAAGAACATAAATATGACAGTTTTTAAATTTCTTTTGTTTGTTATTTGTGCATGATTTGACTCGTGTGGCTCTTATGCCTTGATAAAACCAATATTTGTCTAAGAATATCTTGTGTTTTGAGTTTTATTTCCTTCATTTAGTAATTGTTATTCTTTCCGTCTCTAATTACTTATTCATTTTAAATTGATTTGTTCCTATAAATCATAAAGTGAACTAATTAAAATTTTAAGATTTTTAAAAAATTCTGTCTTTTTCAATATAATAAATTGAGGGTTTAATAAGTAAATTCTTTTTTATTCTTTTTTTATTTGTCAAAATGAACAAGTAATTAGGAACAACTAAGAAAAAGAAAATGGACAAATAATTAGGGACAGAAGGACTATTATTCACTCTCTCCATTTCATTTTGATTGTTTGGTGAGTAACTTGTCCTTTTCGTGTTTTCCAATTGCATAAGATGCTTTAATCTATTGCATACGTTCAATCAACCGTTGTCTTGTATTAACTTGACATGAATTTAAGAAAGTAGAGAAGAGTTTTGAATATTGTGATCTTAAATTAAAGACATGTAGAATATACCAAAATGTTATTTAATTATGTGGCTTTCAACATGTTGTGTGTATACTTTGCCAAACATTTCCAAAAGCTATTAATAAGTTTGACCAACTTTAAAATCAATCCAAACAGACTCATTAAACAAAAAATATAAGCATTATGTATTGGTAGTTAAAACAATTTTGATACTCCTTTGTTTTGAATTTTATATAGGTCATGTAACCAGCATGAGTTGTAATACAGTTATGATGAGATTGCTTTACTCTTGATTAGAGGTTTTGAGGTTTCGAATTTTTAACTTTGAATATTGAAAAAATCCTGTTAGAAGCGCCACTCCAAATGGTCTACTTGTCATGTGTAATTCAAGCAGTAAAATCCACAGAATCAACCTAGATATGATGCATCAACATAGCTTATGTACATCTTCTTAGAATACGACTCTTTCCAGAACCCTGCATGATCACAAGTTTATTCATGCACTTAACTACCTTCTTGACTAGCAACTTGATTGCTTTCTTTTGTTTTAGAGAAAATGGAATAAGAAATTCTTATACATTGTGTATTGTTGATTTTGCAGATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAAC</genome_strand>
        <mrna_strand>GATAAGCACATCCACACAAGAGCTATGAACATTTCTGAAACAAACGTTACAATAGACACACGGCGTATCTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCGAAAAAAAAAAGAAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGAGTTTTCCGTTTTTCGGTAGTGCGAACCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTCGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCAAGCCCAGTGTAGTTCATACTGGAGATCTGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGACTTTTTCACAGGATATGCTAAAAAGAGGCTCAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359001" ref_strand="+" ref_description="SGN-E359001 [cLHT-24-P14]">
      <seq>cagatcgaaaaaaaaaaatgataccgataatgaattctgctcctctatcaactccggcgccggttactctgcccgtccgtacagttccgggcagctacggattgccgttattagggccaatcgcggatcgattagactacttctggttccaaaaacccgaaaacttcttcaccaagagaatggaaaagcacaagagcacggttttcagaacgaacgtgccgccgtgttttccgtttttcggtagtgtgaatccaaatgttgtggcggttttagatgtgaaatcgttttcgcatctgtttgatatggagattgtagagaaagctaatgtgcttgttggggatttcatgcccagtgttgtttatactggagatatgcgtgtttgtgcttatctcgatacttctgaacctaaacatgcccagattaagaattttacactggatcttctaaaaagaggctcaaaaacatgggtgcctacactacttaaagagcttaatacaatgtttacaacttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="24934" stop="30569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25234" g_stop="25651" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25652" i_stop="30174" i_length="4523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30175" g_stop="30269" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="514" r_length="95" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E359001" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25234" e_stop="25651"/>
          <exon e_start="30175" e_stop="30269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCGAAAAAAAAAAA-GATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAGGTACACTTTTTCATCTCCCTGAATTATGCAAAAATCAACCATGAAAATTGTTTGAACACAGACTTGTTAGTTGAATTTCGGATTAGAAAAAACTTCCAAAAACATATTTTCACCGACAGAAATTCATAAATATCTCTGATTTGTATTCATGTGTAAACACAATTTCAATAGTATCTACTCGAATTCACACGATTTTTTTCGAGGCTTGCGCTCAAAGTCCGTTAAAATCTGTTTGGATTGACTTAAAAAGATAGATCAAATCTACTTTTAATTGAATTTTTAATTTTTAAAAGTAATTGATAAACATAAAAAAATATTTAAAATAAATTACAAAGTAAAATAAAAATTAACTTAAAATAAATTAGAAATCAAAAATAAACTTTTTATATTTTGATTATAAAATTATTTTAATTTGATTTTTTTATTTTTAACTTAAAAACTATTTTTTTAAAGTTAAATCTAAACTGGTTAATTTGGGGAAAGGTGATTAATATGTTGAATATCAAAATTAAGGTTTTTTTTAAAGAAAAATTATAATTAAGTTTTTTAATTTCTGACATAAACAAAAATAAAGATTCTTATAAAGTGATGTGACAAATTAAAATTTGAATGATATTTTTTAACCGAAGTAAAATTCTGGCTCCGCATATTCCAAATGCATTCCACGATGCAAAATGTTGTTTTCCTTTTGGCTGTTGAGAGTCCTCGTACTATGATTCGATAATTTAATAGTAGTGGGGTAATGAGGAGATTGTTATAGCCTATAGGATTGCTGCACGTATTAAGTTTAAATCAATTAAGATATTTGGGATTAAAATTTTTCGCGGTCCTTCGAGATGACTTAGTTAGTTTAGAGGATATCATTTAGTTAGTTTAGAGGATAGTTGTTTATACGGATGACTCGAAATTGATTCTTCCTCAATAACTTCTGAGTCGAGCTTGTCGCATAGGGCTGCTTAGTGCAGTTTACACTCCCTGTGTGGTTTGCAGGCTATTACATAGTGGGAGTTTACCCAATGCACACAGAGTGCTCACCCAAAAAGGGCAGAGGCTATGGCAGAAGTTGTAGCGATTGCGAGTTATTTTGGGGTTAAAAAGAAAAGAAAAAAAATTCTGTGACATTTAAAAATTTATTATAATTTCGTCGACTATAGGCTAAATGTTTATACAATGAAAATAAATTTGTGTTATGAGGATTAATTCAAAATAGATAAATTTAAATTGAATCATTTTATTTTAGTTGATTTGGGAAATTCCTAACTTAATGAGGGTAATTTTCTTTATTATTGAATATGTTGATAATAATAGGTGTATATTTGATTTTCTAAAATTTTCACCATTTCGTAATTTAATCATAAAAATTAGAAAATATCTGACGGAGATTAAAAGGTCTTTGTAAGCTAGCTTCAGCCATTCCTTTACATTTTGTCCTCACAATGAAGAAAATAGTATGATTTGATCACTTGCAGATTAAAAATAGTAGAAGAAAATGACTACAAATGACAATTGATTTTGATACTCTAAGTCGATAACAAAGTTATCTCAAAATTATAGTCTTGAAATTTATTTATTTTACTTTTTAGATGAGATCAAATAACATTAAATTTGAGGTATAATTTTTTCTTAAATTTAGTTATCTCTTTAATTAAATAAAGCACTATAAATTTAATTTTAAATATAATAGTGAGATATCTTTATCTTATGAACCAAATATTTGAAAATATTAGCACAGGTGCCAACATTTTACTAGTAATGACATTGAATATCTCCTTTCAGTCTTCACATCGTTTAAATACTATACAAAATTATAGTATCAAATTAAATTAATATGATTTTTTTTTTTGGATTATGAATTCGCAATTTGAGTCTCTTAAATTGTATATTTTTCTTCATGATAACTTCACAAATTATGACTACTATCAAAAGTTTCAGTTTTTATACAATCCTACCAGATTTCTTAGTTAATATTATCAATTTATTATTTCCAATGTATTTACGTAAATTTCCCATAAGAAAAAAGTTCCAATCATTATAAAAGCAACTAATCTTTTGCATTGCATTATAATAACAGGAGGGGAAGATGTTTATGAATTGTTTTTTGGGAAAACTACTTGATAAGACCACATTCATATCATATATACTAATTCTATCTGTACTTTCTGATAACTATACATATTTTACTTAGCGGAATTAGATATTTTAATGAGGGTTTAAAATCTGAGAAGTAAACATACGAACTAGTGGGAGGGGGTTCGACATCTATTGTATATATCTAAAAAATAATTTTAATCATGTATAAATAGTAATACTTTTTCACCGACTACATCCGCCCCTGATCTTACTATCAATTAAGAATTTTCTATCATATATTGAGAAACATACACCTAGTTACATATATTTTTGCTATCAGAAATATAAAAATAGAGAAAGGTGAACAAGATTGTCATGCATCTCAGATAAATATGAATCACACCAAATACATGTATATCAATTTAGTGTGATTCAAATATATCTAGGATACCAAATAAATAGAAAAGTAACGAGCGAAATTTGTTATATATTTCATATACATGCGAATCCAATTGTAATCCTCGATGAGTCTGAATTGGATATGCCTTGTTTTGTAACTCTTTGGAGAAATCACTTACATCTTAATAATATTACTCACGTCTTATGAACACTATACACTCTTTTGCTTTAATTTATGTGACATTTTTTTCTTTCTTGAGAGTCAAATCTAAGTTTGATCAAGAATTTGCATATGAAAATTTTAATTCTTTTGAATGAAATTTATATATATTTGTAAACTACGTAAAAAATATTAAAATAAATTACAATATTTAAAAATTTATTAAAAAATTTAAATAAAATAAATTTATTTAAATCTTTAAATTTAAATCACGTAAATTAAAGGAGTATCAAGGACCACGGGATCATGTGCATGTTGTCCTAAAGCTACTATTGGGCCAAGTCACAAATTTGTCTTACGTATTATCCTCGTATTATTATTGGGATATAGATGACAAGTGAGCTGACATTTCAGTGTAACAACCAGTCTAGGAGCGTCCACATTTTATACATGGCAAGTTAGCAACAATCAATGTGAAAATATCCACCTTAAATCACTTGTAGATTTTTTTTATTACTCCTTCTGATTTATAAAGAATCTTGACATGGAGTTTAAAAAGTATAAAAAGAGTTTTGAATCTTGTTATCCTAAATTAAAATTAAGTTAAATGTAAAAAATTGTTCTTTGATCTTCTCACCTTAAATATATCACGTAAAAAATTAAAATTAAAATATTACAATAAAAAAAAGAGATTAATTTTTCTATAACAGACTAAAAAAAGAAAGGAGACTATTTTTTTAAAACCAAAAAAATGTGTCTTTTCAAGAACATAAATATGACAGTTTTTAAATTTCTTTTGTTTGTTATTTGTGCATGATTTGACTCGTGTGGCTCTTATGCCTTGATAAAACCAATATTTGTCTAAGAATATCTTGTGTTTTGAGTTTTATTTCCTTCATTTAGTAATTGTTATTCTTTCCGTCTCTAATTACTTATTCATTTTAAATTGATTTGTTCCTATAAATCATAAAGTGAACTAATTAAAATTTTAAGATTTTTAAAAAATTCTGTCTTTTTCAATATAATAAATTGAGGGTTTAATAAGTAAATTCTTTTTTATTCTTTTTTTATTTGTCAAAATGAACAAGTAATTAGGAACAACTAAGAAAAAGAAAATGGACAAATAATTAGGGACAGAAGGACTATTATTCACTCTCTCCATTTCATTTTGATTGTTTGGTGAGTAACTTGTCCTTTTCGTGTTTTCCAATTGCATAAGATGCTTTAATCTATTGCATACGTTCAATCAACCGTTGTCTTGTATTAACTTGACATGAATTTAAGAAAGTAGAGAAGAGTTTTGAATATTGTGATCTTAAATTAAAGACATGTAGAATATACCAAAATGTTATTTAATTATGTGGCTTTCAACATGTTGTGTGTATACTTTGCCAAACATTTCCAAAAGCTATTAATAAGTTTGACCAACTTTAAAATCAATCCAAACAGACTCATTAAACAAAAAATATAAGCATTATGTATTGGTAGTTAAAACAATTTTGATACTCCTTTGTTTTGAATTTTATATAGGTCATGTAACCAGCATGAGTTGTAATACAGTTATGATGAGATTGCTTTACTCTTGATTAGAGGTTTTGAGGTTTCGAATTTTTAACTTTGAATATTGAAAAAATCCTGTTAGAAGCGCCACTCCAAATGGTCTACTTGTCATGTGTAATTCAAGCAGTAAAATCCACAGAATCAACCTAGATATGATGCATCAACATAGCTTATGTACATCTTCTTAGAATACGACTCTTTCCAGAACCCTGCATGATCACAAGTTTATTCATGCACTTAACTACCTTCTTGACTAGCAACTTGATTGCTTTCTTTTGTTTTAGAGAAAATGGAATAAGAAATTCTTATACATTGTGTATTGTTGATTTTGCAGATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGA</genome_strand>
        <mrna_strand>CAGATCGAAAAAAAAAAATGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTACAGTTCCGGGCAGCTACGGATTGCCGTTATTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCCGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTTGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGAATTTTACACTGGATCTTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTAATACAATGTTTACAACTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323399" ref_strand="+" ref_description="SGN-E323399 [cTOC-7-E15]">
      <seq>aaaaaagaagataccgataatgaattctgctcctctatcaactccggcgccggttactctgcccgtccgttcgattccgggcagctacggattgccgttagtagggccaatcgcggatcgattagactacttctggttccaaaaaccggaaaacttcttcaccaagagaatggaaaagcacaagagcacggttttcagaacgaacgtgccgccgtgttttccgtttttcggtagtgtgaatccaaatgtggtggcggttttagatgtgaaatcgttttcgcatctgtttgatatggagattgtagagaaagctaatgtgcttgttggggatttcatgcccagtgttgtttatactggagatatgcgtgtttgtgcttatctcgatacttctgaacctaaacatgcccagattaagaatttttcacaggatattctaaaaagaggctcaaaaacatgggtgcctacactacttaaagagcttgatacaatgtttacaacttttgaagcagatctttcaaaatccaatacagcttctcttcttcctgcactccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="24944" stop="30620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25243" g_stop="25651" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25652" i_stop="30174" i_length="4523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30175" g_stop="30320" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="555" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E323399" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25243" e_stop="25651"/>
          <exon e_start="30175" e_stop="30320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAGGTACACTTTTTCATCTCCCTGAATTATGCAAAAATCAACCATGAAAATTGTTTGAACACAGACTTGTTAGTTGAATTTCGGATTAGAAAAAACTTCCAAAAACATATTTTCACCGACAGAAATTCATAAATATCTCTGATTTGTATTCATGTGTAAACACAATTTCAATAGTATCTACTCGAATTCACACGATTTTTTTCGAGGCTTGCGCTCAAAGTCCGTTAAAATCTGTTTGGATTGACTTAAAAAGATAGATCAAATCTACTTTTAATTGAATTTTTAATTTTTAAAAGTAATTGATAAACATAAAAAAATATTTAAAATAAATTACAAAGTAAAATAAAAATTAACTTAAAATAAATTAGAAATCAAAAATAAACTTTTTATATTTTGATTATAAAATTATTTTAATTTGATTTTTTTATTTTTAACTTAAAAACTATTTTTTTAAAGTTAAATCTAAACTGGTTAATTTGGGGAAAGGTGATTAATATGTTGAATATCAAAATTAAGGTTTTTTTTAAAGAAAAATTATAATTAAGTTTTTTAATTTCTGACATAAACAAAAATAAAGATTCTTATAAAGTGATGTGACAAATTAAAATTTGAATGATATTTTTTAACCGAAGTAAAATTCTGGCTCCGCATATTCCAAATGCATTCCACGATGCAAAATGTTGTTTTCCTTTTGGCTGTTGAGAGTCCTCGTACTATGATTCGATAATTTAATAGTAGTGGGGTAATGAGGAGATTGTTATAGCCTATAGGATTGCTGCACGTATTAAGTTTAAATCAATTAAGATATTTGGGATTAAAATTTTTCGCGGTCCTTCGAGATGACTTAGTTAGTTTAGAGGATATCATTTAGTTAGTTTAGAGGATAGTTGTTTATACGGATGACTCGAAATTGATTCTTCCTCAATAACTTCTGAGTCGAGCTTGTCGCATAGGGCTGCTTAGTGCAGTTTACACTCCCTGTGTGGTTTGCAGGCTATTACATAGTGGGAGTTTACCCAATGCACACAGAGTGCTCACCCAAAAAGGGCAGAGGCTATGGCAGAAGTTGTAGCGATTGCGAGTTATTTTGGGGTTAAAAAGAAAAGAAAAAAAATTCTGTGACATTTAAAAATTTATTATAATTTCGTCGACTATAGGCTAAATGTTTATACAATGAAAATAAATTTGTGTTATGAGGATTAATTCAAAATAGATAAATTTAAATTGAATCATTTTATTTTAGTTGATTTGGGAAATTCCTAACTTAATGAGGGTAATTTTCTTTATTATTGAATATGTTGATAATAATAGGTGTATATTTGATTTTCTAAAATTTTCACCATTTCGTAATTTAATCATAAAAATTAGAAAATATCTGACGGAGATTAAAAGGTCTTTGTAAGCTAGCTTCAGCCATTCCTTTACATTTTGTCCTCACAATGAAGAAAATAGTATGATTTGATCACTTGCAGATTAAAAATAGTAGAAGAAAATGACTACAAATGACAATTGATTTTGATACTCTAAGTCGATAACAAAGTTATCTCAAAATTATAGTCTTGAAATTTATTTATTTTACTTTTTAGATGAGATCAAATAACATTAAATTTGAGGTATAATTTTTTCTTAAATTTAGTTATCTCTTTAATTAAATAAAGCACTATAAATTTAATTTTAAATATAATAGTGAGATATCTTTATCTTATGAACCAAATATTTGAAAATATTAGCACAGGTGCCAACATTTTACTAGTAATGACATTGAATATCTCCTTTCAGTCTTCACATCGTTTAAATACTATACAAAATTATAGTATCAAATTAAATTAATATGATTTTTTTTTTTGGATTATGAATTCGCAATTTGAGTCTCTTAAATTGTATATTTTTCTTCATGATAACTTCACAAATTATGACTACTATCAAAAGTTTCAGTTTTTATACAATCCTACCAGATTTCTTAGTTAATATTATCAATTTATTATTTCCAATGTATTTACGTAAATTTCCCATAAGAAAAAAGTTCCAATCATTATAAAAGCAACTAATCTTTTGCATTGCATTATAATAACAGGAGGGGAAGATGTTTATGAATTGTTTTTTGGGAAAACTACTTGATAAGACCACATTCATATCATATATACTAATTCTATCTGTACTTTCTGATAACTATACATATTTTACTTAGCGGAATTAGATATTTTAATGAGGGTTTAAAATCTGAGAAGTAAACATACGAACTAGTGGGAGGGGGTTCGACATCTATTGTATATATCTAAAAAATAATTTTAATCATGTATAAATAGTAATACTTTTTCACCGACTACATCCGCCCCTGATCTTACTATCAATTAAGAATTTTCTATCATATATTGAGAAACATACACCTAGTTACATATATTTTTGCTATCAGAAATATAAAAATAGAGAAAGGTGAACAAGATTGTCATGCATCTCAGATAAATATGAATCACACCAAATACATGTATATCAATTTAGTGTGATTCAAATATATCTAGGATACCAAATAAATAGAAAAGTAACGAGCGAAATTTGTTATATATTTCATATACATGCGAATCCAATTGTAATCCTCGATGAGTCTGAATTGGATATGCCTTGTTTTGTAACTCTTTGGAGAAATCACTTACATCTTAATAATATTACTCACGTCTTATGAACACTATACACTCTTTTGCTTTAATTTATGTGACATTTTTTTCTTTCTTGAGAGTCAAATCTAAGTTTGATCAAGAATTTGCATATGAAAATTTTAATTCTTTTGAATGAAATTTATATATATTTGTAAACTACGTAAAAAATATTAAAATAAATTACAATATTTAAAAATTTATTAAAAAATTTAAATAAAATAAATTTATTTAAATCTTTAAATTTAAATCACGTAAATTAAAGGAGTATCAAGGACCACGGGATCATGTGCATGTTGTCCTAAAGCTACTATTGGGCCAAGTCACAAATTTGTCTTACGTATTATCCTCGTATTATTATTGGGATATAGATGACAAGTGAGCTGACATTTCAGTGTAACAACCAGTCTAGGAGCGTCCACATTTTATACATGGCAAGTTAGCAACAATCAATGTGAAAATATCCACCTTAAATCACTTGTAGATTTTTTTTATTACTCCTTCTGATTTATAAAGAATCTTGACATGGAGTTTAAAAAGTATAAAAAGAGTTTTGAATCTTGTTATCCTAAATTAAAATTAAGTTAAATGTAAAAAATTGTTCTTTGATCTTCTCACCTTAAATATATCACGTAAAAAATTAAAATTAAAATATTACAATAAAAAAAAGAGATTAATTTTTCTATAACAGACTAAAAAAAGAAAGGAGACTATTTTTTTAAAACCAAAAAAATGTGTCTTTTCAAGAACATAAATATGACAGTTTTTAAATTTCTTTTGTTTGTTATTTGTGCATGATTTGACTCGTGTGGCTCTTATGCCTTGATAAAACCAATATTTGTCTAAGAATATCTTGTGTTTTGAGTTTTATTTCCTTCATTTAGTAATTGTTATTCTTTCCGTCTCTAATTACTTATTCATTTTAAATTGATTTGTTCCTATAAATCATAAAGTGAACTAATTAAAATTTTAAGATTTTTAAAAAATTCTGTCTTTTTCAATATAATAAATTGAGGGTTTAATAAGTAAATTCTTTTTTATTCTTTTTTTATTTGTCAAAATGAACAAGTAATTAGGAACAACTAAGAAAAAGAAAATGGACAAATAATTAGGGACAGAAGGACTATTATTCACTCTCTCCATTTCATTTTGATTGTTTGGTGAGTAACTTGTCCTTTTCGTGTTTTCCAATTGCATAAGATGCTTTAATCTATTGCATACGTTCAATCAACCGTTGTCTTGTATTAACTTGACATGAATTTAAGAAAGTAGAGAAGAGTTTTGAATATTGTGATCTTAAATTAAAGACATGTAGAATATACCAAAATGTTATTTAATTATGTGGCTTTCAACATGTTGTGTGTATACTTTGCCAAACATTTCCAAAAGCTATTAATAAGTTTGACCAACTTTAAAATCAATCCAAACAGACTCATTAAACAAAAAATATAAGCATTATGTATTGGTAGTTAAAACAATTTTGATACTCCTTTGTTTTGAATTTTATATAGGTCATGTAACCAGCATGAGTTGTAATACAGTTATGATGAGATTGCTTTACTCTTGATTAGAGGTTTTGAGGTTTCGAATTTTTAACTTTGAATATTGAAAAAATCCTGTTAGAAGCGCCACTCCAAATGGTCTACTTGTCATGTGTAATTCAAGCAGTAAAATCCACAGAATCAACCTAGATATGATGCATCAACATAGCTTATGTACATCTTCTTAGAATACGACTCTTTCCAGAACCCTGCATGATCACAAGTTTATTCATGCACTTAACTACCTTCTTGACTAGCAACTTGATTGCTTTCTTTTGTTTTAGAGAAAATGGAATAAGAAATTCTTATACATTGTGTATTGTTGATTTTGCAGATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAA</genome_strand>
        <mrna_strand>AAAAAAGAAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365292" ref_strand="+" ref_description="SGN-E365292 [cLPT-2-O5]">
      <seq>gaaaaaatgataccgataatgaattctgctcctctatcaactccggcgccggttactctgcccgtccgtacaattccgggcagctatggattgccgttattagggccaatcgcggatcgattagactacttctggttccaaaaacccgaaaacttcttcaccaagagaatggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="24945" stop="25719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25244" g_stop="25419" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E365292" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>176</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25244" e_stop="25419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAA</genome_strand>
        <mrna_strand>GAAAAAATGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTACAATTCCGGGCAGCTATGGATTGCCGTTATTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCCGAAAACTTCTTCACCAAGAGAATGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365319" ref_strand="+" ref_description="SGN-E365319 [cLPT-2-O10]">
      <seq>aaaaatgatacgcgataatgaattctgctcctctatcaacctccggcgccggttacctctgcccgtcccgtaccaatcccgggccagctatggattgccgttattagggccaatcgcggatcgattagactacttctggttccaaaaacccgaaaacttcttcaccaagagaatggaaaagcacaagagcacggttttcagaacgaacgtgccgccgtgttttccgtttttcggtagtgtgaatccaaatgtggtggcggttttagatgtgaaatcgttttcgcatctgtttgatatggagattgtagagaaagctaatgtgcttgttggggatttcatgcccagtgttgtttatactggagatatgcgtgttcgtgcttatctcgatacttctgaacctaaacatgcccagattaagaattttacactggatcttctaaaaagaggctcaaaaacatgggtgcctacactacttaaagagcttaatacaatgttcacaacttttgaagcagatctttcaaaatccaatacagcttctcttcttcctgcactccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="24947" stop="30620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25246" g_stop="25651" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25652" i_stop="30174" i_length="4523">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30175" g_stop="30320" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="558" r_length="146" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E365319" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25246" e_stop="25651"/>
          <exon e_start="30175" e_stop="30320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGATAC-CGATAATGAATTCTGCTCCTCTATCAA-CTCCGGCGCCGGTTA-CTCTGCCCGT-CCGT-TCGATTCCGGG-CAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAGGTACACTTTTTCATCTCCCTGAATTATGCAAAAATCAACCATGAAAATTGTTTGAACACAGACTTGTTAGTTGAATTTCGGATTAGAAAAAACTTCCAAAAACATATTTTCACCGACAGAAATTCATAAATATCTCTGATTTGTATTCATGTGTAAACACAATTTCAATAGTATCTACTCGAATTCACACGATTTTTTTCGAGGCTTGCGCTCAAAGTCCGTTAAAATCTGTTTGGATTGACTTAAAAAGATAGATCAAATCTACTTTTAATTGAATTTTTAATTTTTAAAAGTAATTGATAAACATAAAAAAATATTTAAAATAAATTACAAAGTAAAATAAAAATTAACTTAAAATAAATTAGAAATCAAAAATAAACTTTTTATATTTTGATTATAAAATTATTTTAATTTGATTTTTTTATTTTTAACTTAAAAACTATTTTTTTAAAGTTAAATCTAAACTGGTTAATTTGGGGAAAGGTGATTAATATGTTGAATATCAAAATTAAGGTTTTTTTTAAAGAAAAATTATAATTAAGTTTTTTAATTTCTGACATAAACAAAAATAAAGATTCTTATAAAGTGATGTGACAAATTAAAATTTGAATGATATTTTTTAACCGAAGTAAAATTCTGGCTCCGCATATTCCAAATGCATTCCACGATGCAAAATGTTGTTTTCCTTTTGGCTGTTGAGAGTCCTCGTACTATGATTCGATAATTTAATAGTAGTGGGGTAATGAGGAGATTGTTATAGCCTATAGGATTGCTGCACGTATTAAGTTTAAATCAATTAAGATATTTGGGATTAAAATTTTTCGCGGTCCTTCGAGATGACTTAGTTAGTTTAGAGGATATCATTTAGTTAGTTTAGAGGATAGTTGTTTATACGGATGACTCGAAATTGATTCTTCCTCAATAACTTCTGAGTCGAGCTTGTCGCATAGGGCTGCTTAGTGCAGTTTACACTCCCTGTGTGGTTTGCAGGCTATTACATAGTGGGAGTTTACCCAATGCACACAGAGTGCTCACCCAAAAAGGGCAGAGGCTATGGCAGAAGTTGTAGCGATTGCGAGTTATTTTGGGGTTAAAAAGAAAAGAAAAAAAATTCTGTGACATTTAAAAATTTATTATAATTTCGTCGACTATAGGCTAAATGTTTATACAATGAAAATAAATTTGTGTTATGAGGATTAATTCAAAATAGATAAATTTAAATTGAATCATTTTATTTTAGTTGATTTGGGAAATTCCTAACTTAATGAGGGTAATTTTCTTTATTATTGAATATGTTGATAATAATAGGTGTATATTTGATTTTCTAAAATTTTCACCATTTCGTAATTTAATCATAAAAATTAGAAAATATCTGACGGAGATTAAAAGGTCTTTGTAAGCTAGCTTCAGCCATTCCTTTACATTTTGTCCTCACAATGAAGAAAATAGTATGATTTGATCACTTGCAGATTAAAAATAGTAGAAGAAAATGACTACAAATGACAATTGATTTTGATACTCTAAGTCGATAACAAAGTTATCTCAAAATTATAGTCTTGAAATTTATTTATTTTACTTTTTAGATGAGATCAAATAACATTAAATTTGAGGTATAATTTTTTCTTAAATTTAGTTATCTCTTTAATTAAATAAAGCACTATAAATTTAATTTTAAATATAATAGTGAGATATCTTTATCTTATGAACCAAATATTTGAAAATATTAGCACAGGTGCCAACATTTTACTAGTAATGACATTGAATATCTCCTTTCAGTCTTCACATCGTTTAAATACTATACAAAATTATAGTATCAAATTAAATTAATATGATTTTTTTTTTTGGATTATGAATTCGCAATTTGAGTCTCTTAAATTGTATATTTTTCTTCATGATAACTTCACAAATTATGACTACTATCAAAAGTTTCAGTTTTTATACAATCCTACCAGATTTCTTAGTTAATATTATCAATTTATTATTTCCAATGTATTTACGTAAATTTCCCATAAGAAAAAAGTTCCAATCATTATAAAAGCAACTAATCTTTTGCATTGCATTATAATAACAGGAGGGGAAGATGTTTATGAATTGTTTTTTGGGAAAACTACTTGATAAGACCACATTCATATCATATATACTAATTCTATCTGTACTTTCTGATAACTATACATATTTTACTTAGCGGAATTAGATATTTTAATGAGGGTTTAAAATCTGAGAAGTAAACATACGAACTAGTGGGAGGGGGTTCGACATCTATTGTATATATCTAAAAAATAATTTTAATCATGTATAAATAGTAATACTTTTTCACCGACTACATCCGCCCCTGATCTTACTATCAATTAAGAATTTTCTATCATATATTGAGAAACATACACCTAGTTACATATATTTTTGCTATCAGAAATATAAAAATAGAGAAAGGTGAACAAGATTGTCATGCATCTCAGATAAATATGAATCACACCAAATACATGTATATCAATTTAGTGTGATTCAAATATATCTAGGATACCAAATAAATAGAAAAGTAACGAGCGAAATTTGTTATATATTTCATATACATGCGAATCCAATTGTAATCCTCGATGAGTCTGAATTGGATATGCCTTGTTTTGTAACTCTTTGGAGAAATCACTTACATCTTAATAATATTACTCACGTCTTATGAACACTATACACTCTTTTGCTTTAATTTATGTGACATTTTTTTCTTTCTTGAGAGTCAAATCTAAGTTTGATCAAGAATTTGCATATGAAAATTTTAATTCTTTTGAATGAAATTTATATATATTTGTAAACTACGTAAAAAATATTAAAATAAATTACAATATTTAAAAATTTATTAAAAAATTTAAATAAAATAAATTTATTTAAATCTTTAAATTTAAATCACGTAAATTAAAGGAGTATCAAGGACCACGGGATCATGTGCATGTTGTCCTAAAGCTACTATTGGGCCAAGTCACAAATTTGTCTTACGTATTATCCTCGTATTATTATTGGGATATAGATGACAAGTGAGCTGACATTTCAGTGTAACAACCAGTCTAGGAGCGTCCACATTTTATACATGGCAAGTTAGCAACAATCAATGTGAAAATATCCACCTTAAATCACTTGTAGATTTTTTTTATTACTCCTTCTGATTTATAAAGAATCTTGACATGGAGTTTAAAAAGTATAAAAAGAGTTTTGAATCTTGTTATCCTAAATTAAAATTAAGTTAAATGTAAAAAATTGTTCTTTGATCTTCTCACCTTAAATATATCACGTAAAAAATTAAAATTAAAATATTACAATAAAAAAAAGAGATTAATTTTTCTATAACAGACTAAAAAAAGAAAGGAGACTATTTTTTTAAAACCAAAAAAATGTGTCTTTTCAAGAACATAAATATGACAGTTTTTAAATTTCTTTTGTTTGTTATTTGTGCATGATTTGACTCGTGTGGCTCTTATGCCTTGATAAAACCAATATTTGTCTAAGAATATCTTGTGTTTTGAGTTTTATTTCCTTCATTTAGTAATTGTTATTCTTTCCGTCTCTAATTACTTATTCATTTTAAATTGATTTGTTCCTATAAATCATAAAGTGAACTAATTAAAATTTTAAGATTTTTAAAAAATTCTGTCTTTTTCAATATAATAAATTGAGGGTTTAATAAGTAAATTCTTTTTTATTCTTTTTTTATTTGTCAAAATGAACAAGTAATTAGGAACAACTAAGAAAAAGAAAATGGACAAATAATTAGGGACAGAAGGACTATTATTCACTCTCTCCATTTCATTTTGATTGTTTGGTGAGTAACTTGTCCTTTTCGTGTTTTCCAATTGCATAAGATGCTTTAATCTATTGCATACGTTCAATCAACCGTTGTCTTGTATTAACTTGACATGAATTTAAGAAAGTAGAGAAGAGTTTTGAATATTGTGATCTTAAATTAAAGACATGTAGAATATACCAAAATGTTATTTAATTATGTGGCTTTCAACATGTTGTGTGTATACTTTGCCAAACATTTCCAAAAGCTATTAATAAGTTTGACCAACTTTAAAATCAATCCAAACAGACTCATTAAACAAAAAATATAAGCATTATGTATTGGTAGTTAAAACAATTTTGATACTCCTTTGTTTTGAATTTTATATAGGTCATGTAACCAGCATGAGTTGTAATACAGTTATGATGAGATTGCTTTACTCTTGATTAGAGGTTTTGAGGTTTCGAATTTTTAACTTTGAATATTGAAAAAATCCTGTTAGAAGCGCCACTCCAAATGGTCTACTTGTCATGTGTAATTCAAGCAGTAAAATCCACAGAATCAACCTAGATATGATGCATCAACATAGCTTATGTACATCTTCTTAGAATACGACTCTTTCCAGAACCCTGCATGATCACAAGTTTATTCATGCACTTAACTACCTTCTTGACTAGCAACTTGATTGCTTTCTTTTGTTTTAGAGAAAATGGAATAAGAAATTCTTATACATTGTGTATTGTTGATTTTGCAGATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAA</genome_strand>
        <mrna_strand>AAAAATGATACGCGATAATGAATTCTGCTCCTCTATCAACCTCCGGCGCCGGTTACCTCTGCCCGTCCCGTACCAATCCCGGGCCAGCTATGGATTGCCGTTATTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCCGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTCGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGAATTTTACACTGGATCTTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTAATACAATGTTCACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744787" ref_strand="+" ref_description="SGN-E744787 [GI|4850213]">
      <seq>ataccgataatgaatcctgctcctctatcaactccggcgccggttactctgcccgtccgttcgattccgggcagctacggattgccgttagtagggccaatcgcggatcgattagactacttctggttccaaaaaccggaaaacttcttcaccaagagaatggaaaagcacaagagcacggttttcagaacgaacgtgccgccgtgttttccgtttttcggtagtgtgaatccaaatgtggtggcggttttagatgtgaaatcgttttcgcatctgtttgatatggagattgtagagaaagctaatgtgcttgttggggatttcatgcccagtgttgtttatactggagatatgcgtgtttgtgcttatctcgatacttctgaacctaaacatgcccagattaagaatttttcacaggatattctaaaaagaggctcaaaaacatgggtgcctacactacttaaagagcttgatacaatgtttacaacttttgaagcagatctttcaaaatccaatacagcttctcttcttcctgcactccaaaaattcctctttaacttcttctccctcactatcctcggcgctgatccatctgtctccccagaaatcgccaattctggctacatctttcttgattcatggctagctattcaattagcacctactgtcagcattggtgtccttcaacctcttgaagaaattttagtccattcttttgcataccctttttttcttgtcaaaggtaattatgaaaaactcgttcaattcgtcaaaaatgaagccaaggaagttttaagcagggcacaaacagagtttcaactcacagaacaagaagccattcataacctttggttcattcttgggttcaatgcttttggtggcttctccattttcttgccaactcttttgggaaatcttggagatgagaaaaacgcggatatgcaagagaaactgagaaaagaagtgagagacaaagtcggcgtaaatccagaaaacttgagttttgaaagtgttaaagaaatggaacttgttcagtcttttgtttatgaaacacttaggcttagtccaccagtaccaagtcaatatgcaagagcaagaaaagattttaaactgagttcacatgattcagtttacgaaatcaagaaaggggagcttcttcgtggttatcagcctttagttatgaaagatccaaaggtgtttgatgaacctgaaaagtttgtgttggagagatttacaaaggaaaaagggaaagaattgctgaattatttgttttggtctaatggtccacaaactgggagacctactgaatcaaacaagcaatgtgctgctaaagatatggttactctaactgcttctttgattgtggcttacattttccaaaagtacgattctgtgagtttctcatctggttcactcacatctgtgaaaaaggctagttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="24953" stop="31515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25253" g_stop="25651" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25652" i_stop="30174" i_length="4523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30175" g_stop="31215" g_length="1041"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="1440" r_length="1041" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E744787" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25253" e_stop="25651"/>
          <exon e_start="30175" e_stop="31215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAGGTACACTTTTTCATCTCCCTGAATTATGCAAAAATCAACCATGAAAATTGTTTGAACACAGACTTGTTAGTTGAATTTCGGATTAGAAAAAACTTCCAAAAACATATTTTCACCGACAGAAATTCATAAATATCTCTGATTTGTATTCATGTGTAAACACAATTTCAATAGTATCTACTCGAATTCACACGATTTTTTTCGAGGCTTGCGCTCAAAGTCCGTTAAAATCTGTTTGGATTGACTTAAAAAGATAGATCAAATCTACTTTTAATTGAATTTTTAATTTTTAAAAGTAATTGATAAACATAAAAAAATATTTAAAATAAATTACAAAGTAAAATAAAAATTAACTTAAAATAAATTAGAAATCAAAAATAAACTTTTTATATTTTGATTATAAAATTATTTTAATTTGATTTTTTTATTTTTAACTTAAAAACTATTTTTTTAAAGTTAAATCTAAACTGGTTAATTTGGGGAAAGGTGATTAATATGTTGAATATCAAAATTAAGGTTTTTTTTAAAGAAAAATTATAATTAAGTTTTTTAATTTCTGACATAAACAAAAATAAAGATTCTTATAAAGTGATGTGACAAATTAAAATTTGAATGATATTTTTTAACCGAAGTAAAATTCTGGCTCCGCATATTCCAAATGCATTCCACGATGCAAAATGTTGTTTTCCTTTTGGCTGTTGAGAGTCCTCGTACTATGATTCGATAATTTAATAGTAGTGGGGTAATGAGGAGATTGTTATAGCCTATAGGATTGCTGCACGTATTAAGTTTAAATCAATTAAGATATTTGGGATTAAAATTTTTCGCGGTCCTTCGAGATGACTTAGTTAGTTTAGAGGATATCATTTAGTTAGTTTAGAGGATAGTTGTTTATACGGATGACTCGAAATTGATTCTTCCTCAATAACTTCTGAGTCGAGCTTGTCGCATAGGGCTGCTTAGTGCAGTTTACACTCCCTGTGTGGTTTGCAGGCTATTACATAGTGGGAGTTTACCCAATGCACACAGAGTGCTCACCCAAAAAGGGCAGAGGCTATGGCAGAAGTTGTAGCGATTGCGAGTTATTTTGGGGTTAAAAAGAAAAGAAAAAAAATTCTGTGACATTTAAAAATTTATTATAATTTCGTCGACTATAGGCTAAATGTTTATACAATGAAAATAAATTTGTGTTATGAGGATTAATTCAAAATAGATAAATTTAAATTGAATCATTTTATTTTAGTTGATTTGGGAAATTCCTAACTTAATGAGGGTAATTTTCTTTATTATTGAATATGTTGATAATAATAGGTGTATATTTGATTTTCTAAAATTTTCACCATTTCGTAATTTAATCATAAAAATTAGAAAATATCTGACGGAGATTAAAAGGTCTTTGTAAGCTAGCTTCAGCCATTCCTTTACATTTTGTCCTCACAATGAAGAAAATAGTATGATTTGATCACTTGCAGATTAAAAATAGTAGAAGAAAATGACTACAAATGACAATTGATTTTGATACTCTAAGTCGATAACAAAGTTATCTCAAAATTATAGTCTTGAAATTTATTTATTTTACTTTTTAGATGAGATCAAATAACATTAAATTTGAGGTATAATTTTTTCTTAAATTTAGTTATCTCTTTAATTAAATAAAGCACTATAAATTTAATTTTAAATATAATAGTGAGATATCTTTATCTTATGAACCAAATATTTGAAAATATTAGCACAGGTGCCAACATTTTACTAGTAATGACATTGAATATCTCCTTTCAGTCTTCACATCGTTTAAATACTATACAAAATTATAGTATCAAATTAAATTAATATGATTTTTTTTTTTGGATTATGAATTCGCAATTTGAGTCTCTTAAATTGTATATTTTTCTTCATGATAACTTCACAAATTATGACTACTATCAAAAGTTTCAGTTTTTATACAATCCTACCAGATTTCTTAGTTAATATTATCAATTTATTATTTCCAATGTATTTACGTAAATTTCCCATAAGAAAAAAGTTCCAATCATTATAAAAGCAACTAATCTTTTGCATTGCATTATAATAACAGGAGGGGAAGATGTTTATGAATTGTTTTTTGGGAAAACTACTTGATAAGACCACATTCATATCATATATACTAATTCTATCTGTACTTTCTGATAACTATACATATTTTACTTAGCGGAATTAGATATTTTAATGAGGGTTTAAAATCTGAGAAGTAAACATACGAACTAGTGGGAGGGGGTTCGACATCTATTGTATATATCTAAAAAATAATTTTAATCATGTATAAATAGTAATACTTTTTCACCGACTACATCCGCCCCTGATCTTACTATCAATTAAGAATTTTCTATCATATATTGAGAAACATACACCTAGTTACATATATTTTTGCTATCAGAAATATAAAAATAGAGAAAGGTGAACAAGATTGTCATGCATCTCAGATAAATATGAATCACACCAAATACATGTATATCAATTTAGTGTGATTCAAATATATCTAGGATACCAAATAAATAGAAAAGTAACGAGCGAAATTTGTTATATATTTCATATACATGCGAATCCAATTGTAATCCTCGATGAGTCTGAATTGGATATGCCTTGTTTTGTAACTCTTTGGAGAAATCACTTACATCTTAATAATATTACTCACGTCTTATGAACACTATACACTCTTTTGCTTTAATTTATGTGACATTTTTTTCTTTCTTGAGAGTCAAATCTAAGTTTGATCAAGAATTTGCATATGAAAATTTTAATTCTTTTGAATGAAATTTATATATATTTGTAAACTACGTAAAAAATATTAAAATAAATTACAATATTTAAAAATTTATTAAAAAATTTAAATAAAATAAATTTATTTAAATCTTTAAATTTAAATCACGTAAATTAAAGGAGTATCAAGGACCACGGGATCATGTGCATGTTGTCCTAAAGCTACTATTGGGCCAAGTCACAAATTTGTCTTACGTATTATCCTCGTATTATTATTGGGATATAGATGACAAGTGAGCTGACATTTCAGTGTAACAACCAGTCTAGGAGCGTCCACATTTTATACATGGCAAGTTAGCAACAATCAATGTGAAAATATCCACCTTAAATCACTTGTAGATTTTTTTTATTACTCCTTCTGATTTATAAAGAATCTTGACATGGAGTTTAAAAAGTATAAAAAGAGTTTTGAATCTTGTTATCCTAAATTAAAATTAAGTTAAATGTAAAAAATTGTTCTTTGATCTTCTCACCTTAAATATATCACGTAAAAAATTAAAATTAAAATATTACAATAAAAAAAAGAGATTAATTTTTCTATAACAGACTAAAAAAAGAAAGGAGACTATTTTTTTAAAACCAAAAAAATGTGTCTTTTCAAGAACATAAATATGACAGTTTTTAAATTTCTTTTGTTTGTTATTTGTGCATGATTTGACTCGTGTGGCTCTTATGCCTTGATAAAACCAATATTTGTCTAAGAATATCTTGTGTTTTGAGTTTTATTTCCTTCATTTAGTAATTGTTATTCTTTCCGTCTCTAATTACTTATTCATTTTAAATTGATTTGTTCCTATAAATCATAAAGTGAACTAATTAAAATTTTAAGATTTTTAAAAAATTCTGTCTTTTTCAATATAATAAATTGAGGGTTTAATAAGTAAATTCTTTTTTATTCTTTTTTTATTTGTCAAAATGAACAAGTAATTAGGAACAACTAAGAAAAAGAAAATGGACAAATAATTAGGGACAGAAGGACTATTATTCACTCTCTCCATTTCATTTTGATTGTTTGGTGAGTAACTTGTCCTTTTCGTGTTTTCCAATTGCATAAGATGCTTTAATCTATTGCATACGTTCAATCAACCGTTGTCTTGTATTAACTTGACATGAATTTAAGAAAGTAGAGAAGAGTTTTGAATATTGTGATCTTAAATTAAAGACATGTAGAATATACCAAAATGTTATTTAATTATGTGGCTTTCAACATGTTGTGTGTATACTTTGCCAAACATTTCCAAAAGCTATTAATAAGTTTGACCAACTTTAAAATCAATCCAAACAGACTCATTAAACAAAAAATATAAGCATTATGTATTGGTAGTTAAAACAATTTTGATACTCCTTTGTTTTGAATTTTATATAGGTCATGTAACCAGCATGAGTTGTAATACAGTTATGATGAGATTGCTTTACTCTTGATTAGAGGTTTTGAGGTTTCGAATTTTTAACTTTGAATATTGAAAAAATCCTGTTAGAAGCGCCACTCCAAATGGTCTACTTGTCATGTGTAATTCAAGCAGTAAAATCCACAGAATCAACCTAGATATGATGCATCAACATAGCTTATGTACATCTTCTTAGAATACGACTCTTTCCAGAACCCTGCATGATCACAAGTTTATTCATGCACTTAACTACCTTCTTGACTAGCAACTTGATTGCTTTCTTTTGTTTTAGAGAAAATGGAATAAGAAATTCTTATACATTGTGTATTGTTGATTTTGCAGATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAAATTCCTCTTTAACTTCTTCTCCCTCACTATCCTCGGCGCTGATCCATCTGTCTCCCCAGAAATCGCCAATTCTGGCTACATCTTTCTTGATTCATGGCTAGCTATTCAATTAGCACCTACTGTCAGCATTGGTGTCCTTCAACCTCTTGAAGAAATTTTAGTCCATTCTTTTGCATACCCTTTTTTTCTTGTCAAAGGTAATTATGAAAAACTCGTTCAATTCGTCAAAAATGAAGCCAAGGAAGTTTTAAGCAGGGCACAAACAGAGTTTCAACTCACAGAACAAGAAGCCATTCATAACCTTTTGTTCATTCTTGGGTTCAATGCTTTTGGTGGCTTCTCCATTTTCTTGCCAACTCTTTTGGGAAATCTTGGAGATGAGAAAAACGCGGATATGCAAGAGAAACTGAGAAAAGAAGTGAGAGACAAAGTCGGCGTAAATCCAGAAAACTTGAGTTTTGAAAGTGTTAAAGAAATGGAACTTGTTCAGTCTTTTGTTTATGAAACACTTAGGCTTAGTCCACCAGTACCAAGTCAATATGCAAGAGCAAGAAAAGATTTTAAACTGAGTTCACATGATTCAGTTTACGAAATCAAGAAAGGGGAGCTTCTTTGTGGTTATCAGCCTTTAGTTATGAAAGATCCAAAGGTGTTTGATGAACCTGAAAAGTTTGTGTTGGAGAGATTTACAAAGGAAAAAGGGAAAGAATTGCTGAATTATTTGTTTTGGTCTAATGGTCCACAAACTGGGAGACCTACTGAATCAAACAAGCAATGTGCTGCTAAAGATATGGTTACTCTAACTGCTTCTTTGATTGTGGCTTACATTTTCCAAAAGTACGATTCTGTGAGTTTCTCATCTGGTTCACTCACATCTGTGAAAAAGGCTAGTTGA</genome_strand>
        <mrna_strand>ATACCGATAATGAATCCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAAATTCCTCTTTAACTTCTTCTCCCTCACTATCCTCGGCGCTGATCCATCTGTCTCCCCAGAAATCGCCAATTCTGGCTACATCTTTCTTGATTCATGGCTAGCTATTCAATTAGCACCTACTGTCAGCATTGGTGTCCTTCAACCTCTTGAAGAAATTTTAGTCCATTCTTTTGCATACCCTTTTTTTCTTGTCAAAGGTAATTATGAAAAACTCGTTCAATTCGTCAAAAATGAAGCCAAGGAAGTTTTAAGCAGGGCACAAACAGAGTTTCAACTCACAGAACAAGAAGCCATTCATAACCTTTGGTTCATTCTTGGGTTCAATGCTTTTGGTGGCTTCTCCATTTTCTTGCCAACTCTTTTGGGAAATCTTGGAGATGAGAAAAACGCGGATATGCAAGAGAAACTGAGAAAAGAAGTGAGAGACAAAGTCGGCGTAAATCCAGAAAACTTGAGTTTTGAAAGTGTTAAAGAAATGGAACTTGTTCAGTCTTTTGTTTATGAAACACTTAGGCTTAGTCCACCAGTACCAAGTCAATATGCAAGAGCAAGAAAAGATTTTAAACTGAGTTCACATGATTCAGTTTACGAAATCAAGAAAGGGGAGCTTCTTCGTGGTTATCAGCCTTTAGTTATGAAAGATCCAAAGGTGTTTGATGAACCTGAAAAGTTTGTGTTGGAGAGATTTACAAAGGAAAAAGGGAAAGAATTGCTGAATTATTTGTTTTGGTCTAATGGTCCACAAACTGGGAGACCTACTGAATCAAACAAGCAATGTGCTGCTAAAGATATGGTTACTCTAACTGCTTCTTTGATTGTGGCTTACATTTTCCAAAAGTACGATTCTGTGAGTTTCTCATCTGGTTCACTCACATCTGTGAAAAAGGCTAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356062" ref_strand="+" ref_description="SGN-E356062 [cLHT-7-E13]">
      <seq>gataatgaattctgctcctctatcaactccggcgccggttactctgcccgtccgtacagttccgggcagctacggattgccgttattagggccaatcgcggatcgattagactacttctggttccaaaaacccgaaaacttcttcaccaagagaatggaaaagcacaagagcacggttttcagaacgaacgtgccgccgtgttttccgtttttcggtagtgtgaatccaaatgttgtggcggttttagatgtgaaatcgttttcgcatctgtttgatatggagattgtagagaaagctaatgtgcttgttggggatttcatgcccagtgttgtttatactggagatatgcgtgtttgtgcttatctcgatacttctgaacctaaacatgcccagattaagaattttacactggatcttctaaaaagaggctcaaaaacatgggtgcctacactacttaaagagcttaatacaatgtttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="24958" stop="30560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25258" g_stop="25651" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25652" i_stop="30174" i_length="4523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30175" g_stop="30260" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="480" r_length="86" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E356062" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25258" e_stop="25651"/>
          <exon e_start="30175" e_stop="30260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAGGTACACTTTTTCATCTCCCTGAATTATGCAAAAATCAACCATGAAAATTGTTTGAACACAGACTTGTTAGTTGAATTTCGGATTAGAAAAAACTTCCAAAAACATATTTTCACCGACAGAAATTCATAAATATCTCTGATTTGTATTCATGTGTAAACACAATTTCAATAGTATCTACTCGAATTCACACGATTTTTTTCGAGGCTTGCGCTCAAAGTCCGTTAAAATCTGTTTGGATTGACTTAAAAAGATAGATCAAATCTACTTTTAATTGAATTTTTAATTTTTAAAAGTAATTGATAAACATAAAAAAATATTTAAAATAAATTACAAAGTAAAATAAAAATTAACTTAAAATAAATTAGAAATCAAAAATAAACTTTTTATATTTTGATTATAAAATTATTTTAATTTGATTTTTTTATTTTTAACTTAAAAACTATTTTTTTAAAGTTAAATCTAAACTGGTTAATTTGGGGAAAGGTGATTAATATGTTGAATATCAAAATTAAGGTTTTTTTTAAAGAAAAATTATAATTAAGTTTTTTAATTTCTGACATAAACAAAAATAAAGATTCTTATAAAGTGATGTGACAAATTAAAATTTGAATGATATTTTTTAACCGAAGTAAAATTCTGGCTCCGCATATTCCAAATGCATTCCACGATGCAAAATGTTGTTTTCCTTTTGGCTGTTGAGAGTCCTCGTACTATGATTCGATAATTTAATAGTAGTGGGGTAATGAGGAGATTGTTATAGCCTATAGGATTGCTGCACGTATTAAGTTTAAATCAATTAAGATATTTGGGATTAAAATTTTTCGCGGTCCTTCGAGATGACTTAGTTAGTTTAGAGGATATCATTTAGTTAGTTTAGAGGATAGTTGTTTATACGGATGACTCGAAATTGATTCTTCCTCAATAACTTCTGAGTCGAGCTTGTCGCATAGGGCTGCTTAGTGCAGTTTACACTCCCTGTGTGGTTTGCAGGCTATTACATAGTGGGAGTTTACCCAATGCACACAGAGTGCTCACCCAAAAAGGGCAGAGGCTATGGCAGAAGTTGTAGCGATTGCGAGTTATTTTGGGGTTAAAAAGAAAAGAAAAAAAATTCTGTGACATTTAAAAATTTATTATAATTTCGTCGACTATAGGCTAAATGTTTATACAATGAAAATAAATTTGTGTTATGAGGATTAATTCAAAATAGATAAATTTAAATTGAATCATTTTATTTTAGTTGATTTGGGAAATTCCTAACTTAATGAGGGTAATTTTCTTTATTATTGAATATGTTGATAATAATAGGTGTATATTTGATTTTCTAAAATTTTCACCATTTCGTAATTTAATCATAAAAATTAGAAAATATCTGACGGAGATTAAAAGGTCTTTGTAAGCTAGCTTCAGCCATTCCTTTACATTTTGTCCTCACAATGAAGAAAATAGTATGATTTGATCACTTGCAGATTAAAAATAGTAGAAGAAAATGACTACAAATGACAATTGATTTTGATACTCTAAGTCGATAACAAAGTTATCTCAAAATTATAGTCTTGAAATTTATTTATTTTACTTTTTAGATGAGATCAAATAACATTAAATTTGAGGTATAATTTTTTCTTAAATTTAGTTATCTCTTTAATTAAATAAAGCACTATAAATTTAATTTTAAATATAATAGTGAGATATCTTTATCTTATGAACCAAATATTTGAAAATATTAGCACAGGTGCCAACATTTTACTAGTAATGACATTGAATATCTCCTTTCAGTCTTCACATCGTTTAAATACTATACAAAATTATAGTATCAAATTAAATTAATATGATTTTTTTTTTTGGATTATGAATTCGCAATTTGAGTCTCTTAAATTGTATATTTTTCTTCATGATAACTTCACAAATTATGACTACTATCAAAAGTTTCAGTTTTTATACAATCCTACCAGATTTCTTAGTTAATATTATCAATTTATTATTTCCAATGTATTTACGTAAATTTCCCATAAGAAAAAAGTTCCAATCATTATAAAAGCAACTAATCTTTTGCATTGCATTATAATAACAGGAGGGGAAGATGTTTATGAATTGTTTTTTGGGAAAACTACTTGATAAGACCACATTCATATCATATATACTAATTCTATCTGTACTTTCTGATAACTATACATATTTTACTTAGCGGAATTAGATATTTTAATGAGGGTTTAAAATCTGAGAAGTAAACATACGAACTAGTGGGAGGGGGTTCGACATCTATTGTATATATCTAAAAAATAATTTTAATCATGTATAAATAGTAATACTTTTTCACCGACTACATCCGCCCCTGATCTTACTATCAATTAAGAATTTTCTATCATATATTGAGAAACATACACCTAGTTACATATATTTTTGCTATCAGAAATATAAAAATAGAGAAAGGTGAACAAGATTGTCATGCATCTCAGATAAATATGAATCACACCAAATACATGTATATCAATTTAGTGTGATTCAAATATATCTAGGATACCAAATAAATAGAAAAGTAACGAGCGAAATTTGTTATATATTTCATATACATGCGAATCCAATTGTAATCCTCGATGAGTCTGAATTGGATATGCCTTGTTTTGTAACTCTTTGGAGAAATCACTTACATCTTAATAATATTACTCACGTCTTATGAACACTATACACTCTTTTGCTTTAATTTATGTGACATTTTTTTCTTTCTTGAGAGTCAAATCTAAGTTTGATCAAGAATTTGCATATGAAAATTTTAATTCTTTTGAATGAAATTTATATATATTTGTAAACTACGTAAAAAATATTAAAATAAATTACAATATTTAAAAATTTATTAAAAAATTTAAATAAAATAAATTTATTTAAATCTTTAAATTTAAATCACGTAAATTAAAGGAGTATCAAGGACCACGGGATCATGTGCATGTTGTCCTAAAGCTACTATTGGGCCAAGTCACAAATTTGTCTTACGTATTATCCTCGTATTATTATTGGGATATAGATGACAAGTGAGCTGACATTTCAGTGTAACAACCAGTCTAGGAGCGTCCACATTTTATACATGGCAAGTTAGCAACAATCAATGTGAAAATATCCACCTTAAATCACTTGTAGATTTTTTTTATTACTCCTTCTGATTTATAAAGAATCTTGACATGGAGTTTAAAAAGTATAAAAAGAGTTTTGAATCTTGTTATCCTAAATTAAAATTAAGTTAAATGTAAAAAATTGTTCTTTGATCTTCTCACCTTAAATATATCACGTAAAAAATTAAAATTAAAATATTACAATAAAAAAAAGAGATTAATTTTTCTATAACAGACTAAAAAAAGAAAGGAGACTATTTTTTTAAAACCAAAAAAATGTGTCTTTTCAAGAACATAAATATGACAGTTTTTAAATTTCTTTTGTTTGTTATTTGTGCATGATTTGACTCGTGTGGCTCTTATGCCTTGATAAAACCAATATTTGTCTAAGAATATCTTGTGTTTTGAGTTTTATTTCCTTCATTTAGTAATTGTTATTCTTTCCGTCTCTAATTACTTATTCATTTTAAATTGATTTGTTCCTATAAATCATAAAGTGAACTAATTAAAATTTTAAGATTTTTAAAAAATTCTGTCTTTTTCAATATAATAAATTGAGGGTTTAATAAGTAAATTCTTTTTTATTCTTTTTTTATTTGTCAAAATGAACAAGTAATTAGGAACAACTAAGAAAAAGAAAATGGACAAATAATTAGGGACAGAAGGACTATTATTCACTCTCTCCATTTCATTTTGATTGTTTGGTGAGTAACTTGTCCTTTTCGTGTTTTCCAATTGCATAAGATGCTTTAATCTATTGCATACGTTCAATCAACCGTTGTCTTGTATTAACTTGACATGAATTTAAGAAAGTAGAGAAGAGTTTTGAATATTGTGATCTTAAATTAAAGACATGTAGAATATACCAAAATGTTATTTAATTATGTGGCTTTCAACATGTTGTGTGTATACTTTGCCAAACATTTCCAAAAGCTATTAATAAGTTTGACCAACTTTAAAATCAATCCAAACAGACTCATTAAACAAAAAATATAAGCATTATGTATTGGTAGTTAAAACAATTTTGATACTCCTTTGTTTTGAATTTTATATAGGTCATGTAACCAGCATGAGTTGTAATACAGTTATGATGAGATTGCTTTACTCTTGATTAGAGGTTTTGAGGTTTCGAATTTTTAACTTTGAATATTGAAAAAATCCTGTTAGAAGCGCCACTCCAAATGGTCTACTTGTCATGTGTAATTCAAGCAGTAAAATCCACAGAATCAACCTAGATATGATGCATCAACATAGCTTATGTACATCTTCTTAGAATACGACTCTTTCCAGAACCCTGCATGATCACAAGTTTATTCATGCACTTAACTACCTTCTTGACTAGCAACTTGATTGCTTTCTTTTGTTTTAGAGAAAATGGAATAAGAAATTCTTATACATTGTGTATTGTTGATTTTGCAGATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTAC</genome_strand>
        <mrna_strand>GATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTACAGTTCCGGGCAGCTACGGATTGCCGTTATTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCCGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTTGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGAATTTTACACTGGATCTTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTAATACAATGTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323566" ref_strand="+" ref_description="SGN-E323566 [cTOC-2-O5]">
      <seq>taatgaattctgctcctctatcaactccggcgccggttactctgcccgtccgttcgattccgggcagctacggattgccgttagtagggccaatcgcggatcgattagactacttctggttccaaaaaccggaaaacttcttcaccaagagaatggaaaagcacaagagcacggttttcagaacgaacgtgccgccgtgttttccgtttttcggtagtgtgaatccaaatgtggtggcggttttagatgtgaaatcgttttcgcatctgtttgatatggagattgtagagaaagctaatgtgcttgttggggatttcatgcccagtgttgtttatactggagatatgcgtgtttgtgcttatctcgatacttctgaacctaaacatgcccagattaagaatttttcacaggatattctaaaaagaggctcanaaacatgggtgcctacactacttaaagagcttgatacaatgtttacaacttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="24960" stop="30569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25260" g_stop="25651" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25652" i_stop="30174" i_length="4523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30175" g_stop="30269" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="487" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E323566" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25260" e_stop="25651"/>
          <exon e_start="30175" e_stop="30269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAGGTACACTTTTTCATCTCCCTGAATTATGCAAAAATCAACCATGAAAATTGTTTGAACACAGACTTGTTAGTTGAATTTCGGATTAGAAAAAACTTCCAAAAACATATTTTCACCGACAGAAATTCATAAATATCTCTGATTTGTATTCATGTGTAAACACAATTTCAATAGTATCTACTCGAATTCACACGATTTTTTTCGAGGCTTGCGCTCAAAGTCCGTTAAAATCTGTTTGGATTGACTTAAAAAGATAGATCAAATCTACTTTTAATTGAATTTTTAATTTTTAAAAGTAATTGATAAACATAAAAAAATATTTAAAATAAATTACAAAGTAAAATAAAAATTAACTTAAAATAAATTAGAAATCAAAAATAAACTTTTTATATTTTGATTATAAAATTATTTTAATTTGATTTTTTTATTTTTAACTTAAAAACTATTTTTTTAAAGTTAAATCTAAACTGGTTAATTTGGGGAAAGGTGATTAATATGTTGAATATCAAAATTAAGGTTTTTTTTAAAGAAAAATTATAATTAAGTTTTTTAATTTCTGACATAAACAAAAATAAAGATTCTTATAAAGTGATGTGACAAATTAAAATTTGAATGATATTTTTTAACCGAAGTAAAATTCTGGCTCCGCATATTCCAAATGCATTCCACGATGCAAAATGTTGTTTTCCTTTTGGCTGTTGAGAGTCCTCGTACTATGATTCGATAATTTAATAGTAGTGGGGTAATGAGGAGATTGTTATAGCCTATAGGATTGCTGCACGTATTAAGTTTAAATCAATTAAGATATTTGGGATTAAAATTTTTCGCGGTCCTTCGAGATGACTTAGTTAGTTTAGAGGATATCATTTAGTTAGTTTAGAGGATAGTTGTTTATACGGATGACTCGAAATTGATTCTTCCTCAATAACTTCTGAGTCGAGCTTGTCGCATAGGGCTGCTTAGTGCAGTTTACACTCCCTGTGTGGTTTGCAGGCTATTACATAGTGGGAGTTTACCCAATGCACACAGAGTGCTCACCCAAAAAGGGCAGAGGCTATGGCAGAAGTTGTAGCGATTGCGAGTTATTTTGGGGTTAAAAAGAAAAGAAAAAAAATTCTGTGACATTTAAAAATTTATTATAATTTCGTCGACTATAGGCTAAATGTTTATACAATGAAAATAAATTTGTGTTATGAGGATTAATTCAAAATAGATAAATTTAAATTGAATCATTTTATTTTAGTTGATTTGGGAAATTCCTAACTTAATGAGGGTAATTTTCTTTATTATTGAATATGTTGATAATAATAGGTGTATATTTGATTTTCTAAAATTTTCACCATTTCGTAATTTAATCATAAAAATTAGAAAATATCTGACGGAGATTAAAAGGTCTTTGTAAGCTAGCTTCAGCCATTCCTTTACATTTTGTCCTCACAATGAAGAAAATAGTATGATTTGATCACTTGCAGATTAAAAATAGTAGAAGAAAATGACTACAAATGACAATTGATTTTGATACTCTAAGTCGATAACAAAGTTATCTCAAAATTATAGTCTTGAAATTTATTTATTTTACTTTTTAGATGAGATCAAATAACATTAAATTTGAGGTATAATTTTTTCTTAAATTTAGTTATCTCTTTAATTAAATAAAGCACTATAAATTTAATTTTAAATATAATAGTGAGATATCTTTATCTTATGAACCAAATATTTGAAAATATTAGCACAGGTGCCAACATTTTACTAGTAATGACATTGAATATCTCCTTTCAGTCTTCACATCGTTTAAATACTATACAAAATTATAGTATCAAATTAAATTAATATGATTTTTTTTTTTGGATTATGAATTCGCAATTTGAGTCTCTTAAATTGTATATTTTTCTTCATGATAACTTCACAAATTATGACTACTATCAAAAGTTTCAGTTTTTATACAATCCTACCAGATTTCTTAGTTAATATTATCAATTTATTATTTCCAATGTATTTACGTAAATTTCCCATAAGAAAAAAGTTCCAATCATTATAAAAGCAACTAATCTTTTGCATTGCATTATAATAACAGGAGGGGAAGATGTTTATGAATTGTTTTTTGGGAAAACTACTTGATAAGACCACATTCATATCATATATACTAATTCTATCTGTACTTTCTGATAACTATACATATTTTACTTAGCGGAATTAGATATTTTAATGAGGGTTTAAAATCTGAGAAGTAAACATACGAACTAGTGGGAGGGGGTTCGACATCTATTGTATATATCTAAAAAATAATTTTAATCATGTATAAATAGTAATACTTTTTCACCGACTACATCCGCCCCTGATCTTACTATCAATTAAGAATTTTCTATCATATATTGAGAAACATACACCTAGTTACATATATTTTTGCTATCAGAAATATAAAAATAGAGAAAGGTGAACAAGATTGTCATGCATCTCAGATAAATATGAATCACACCAAATACATGTATATCAATTTAGTGTGATTCAAATATATCTAGGATACCAAATAAATAGAAAAGTAACGAGCGAAATTTGTTATATATTTCATATACATGCGAATCCAATTGTAATCCTCGATGAGTCTGAATTGGATATGCCTTGTTTTGTAACTCTTTGGAGAAATCACTTACATCTTAATAATATTACTCACGTCTTATGAACACTATACACTCTTTTGCTTTAATTTATGTGACATTTTTTTCTTTCTTGAGAGTCAAATCTAAGTTTGATCAAGAATTTGCATATGAAAATTTTAATTCTTTTGAATGAAATTTATATATATTTGTAAACTACGTAAAAAATATTAAAATAAATTACAATATTTAAAAATTTATTAAAAAATTTAAATAAAATAAATTTATTTAAATCTTTAAATTTAAATCACGTAAATTAAAGGAGTATCAAGGACCACGGGATCATGTGCATGTTGTCCTAAAGCTACTATTGGGCCAAGTCACAAATTTGTCTTACGTATTATCCTCGTATTATTATTGGGATATAGATGACAAGTGAGCTGACATTTCAGTGTAACAACCAGTCTAGGAGCGTCCACATTTTATACATGGCAAGTTAGCAACAATCAATGTGAAAATATCCACCTTAAATCACTTGTAGATTTTTTTTATTACTCCTTCTGATTTATAAAGAATCTTGACATGGAGTTTAAAAAGTATAAAAAGAGTTTTGAATCTTGTTATCCTAAATTAAAATTAAGTTAAATGTAAAAAATTGTTCTTTGATCTTCTCACCTTAAATATATCACGTAAAAAATTAAAATTAAAATATTACAATAAAAAAAAGAGATTAATTTTTCTATAACAGACTAAAAAAAGAAAGGAGACTATTTTTTTAAAACCAAAAAAATGTGTCTTTTCAAGAACATAAATATGACAGTTTTTAAATTTCTTTTGTTTGTTATTTGTGCATGATTTGACTCGTGTGGCTCTTATGCCTTGATAAAACCAATATTTGTCTAAGAATATCTTGTGTTTTGAGTTTTATTTCCTTCATTTAGTAATTGTTATTCTTTCCGTCTCTAATTACTTATTCATTTTAAATTGATTTGTTCCTATAAATCATAAAGTGAACTAATTAAAATTTTAAGATTTTTAAAAAATTCTGTCTTTTTCAATATAATAAATTGAGGGTTTAATAAGTAAATTCTTTTTTATTCTTTTTTTATTTGTCAAAATGAACAAGTAATTAGGAACAACTAAGAAAAAGAAAATGGACAAATAATTAGGGACAGAAGGACTATTATTCACTCTCTCCATTTCATTTTGATTGTTTGGTGAGTAACTTGTCCTTTTCGTGTTTTCCAATTGCATAAGATGCTTTAATCTATTGCATACGTTCAATCAACCGTTGTCTTGTATTAACTTGACATGAATTTAAGAAAGTAGAGAAGAGTTTTGAATATTGTGATCTTAAATTAAAGACATGTAGAATATACCAAAATGTTATTTAATTATGTGGCTTTCAACATGTTGTGTGTATACTTTGCCAAACATTTCCAAAAGCTATTAATAAGTTTGACCAACTTTAAAATCAATCCAAACAGACTCATTAAACAAAAAATATAAGCATTATGTATTGGTAGTTAAAACAATTTTGATACTCCTTTGTTTTGAATTTTATATAGGTCATGTAACCAGCATGAGTTGTAATACAGTTATGATGAGATTGCTTTACTCTTGATTAGAGGTTTTGAGGTTTCGAATTTTTAACTTTGAATATTGAAAAAATCCTGTTAGAAGCGCCACTCCAAATGGTCTACTTGTCATGTGTAATTCAAGCAGTAAAATCCACAGAATCAACCTAGATATGATGCATCAACATAGCTTATGTACATCTTCTTAGAATACGACTCTTTCCAGAACCCTGCATGATCACAAGTTTATTCATGCACTTAACTACCTTCTTGACTAGCAACTTGATTGCTTTCTTTTGTTTTAGAGAAAATGGAATAAGAAATTCTTATACATTGTGTATTGTTGATTTTGCAGATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGA</genome_strand>
        <mrna_strand>TAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCANAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348486" ref_strand="+" ref_description="SGN-E348486 [cTOF-30-I14]">
      <seq>tcttcaccaagagaatggaaaagcacaagagcacggttttcagaacgaacgtgccgccgtgttttccgtttttcggtagtgtgaatccaaatgtggtggcggttttagatgtgaaatcgttttcgcatctgtttgatatggagattgtagagaaagctaatgtgcttgttggggatttcatgcccagtgttgtttatactggagatatgcgtgtttgtgcttatctcgatacttctgaacctaaacatgcccagattaagaatttttcacaggatattctaaaaagaggctcaaaaacatgggtgcctacactacttaaagagcttgatacaatgtttacaacttttgaagcagatctttcaaaatccaatacagcttctcttcttcctgcactccaaaaattcctctttaacttcttctccctcactatcctcggcgctgatccatctgtctccccagaaatcgccaattctggctacatctttcttgattcatggctagctattcaattagcacctactgtcagcatttggtgtccttcaacctcttgaagaaattttagtccattcttttgcataccctttttttcttgtcaaaggtaattatgaaaaactcgttcaattcgtcaaaaatgaagccaaggnaagttttaagcagggcacanacagagtttcaactcacagaacaagaagccattcataacccttttgttcattctttgggttcaatgcctttttggtggctttctccattttcttgccaactcttttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25098" stop="30986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25398" g_stop="25651" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25652" i_stop="30174" i_length="4523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30175" g_stop="30686" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="773" r_length="519" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E348486" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25398" e_stop="25651"/>
          <exon e_start="30175" e_stop="30686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAGGTACACTTTTTCATCTCCCTGAATTATGCAAAAATCAACCATGAAAATTGTTTGAACACAGACTTGTTAGTTGAATTTCGGATTAGAAAAAACTTCCAAAAACATATTTTCACCGACAGAAATTCATAAATATCTCTGATTTGTATTCATGTGTAAACACAATTTCAATAGTATCTACTCGAATTCACACGATTTTTTTCGAGGCTTGCGCTCAAAGTCCGTTAAAATCTGTTTGGATTGACTTAAAAAGATAGATCAAATCTACTTTTAATTGAATTTTTAATTTTTAAAAGTAATTGATAAACATAAAAAAATATTTAAAATAAATTACAAAGTAAAATAAAAATTAACTTAAAATAAATTAGAAATCAAAAATAAACTTTTTATATTTTGATTATAAAATTATTTTAATTTGATTTTTTTATTTTTAACTTAAAAACTATTTTTTTAAAGTTAAATCTAAACTGGTTAATTTGGGGAAAGGTGATTAATATGTTGAATATCAAAATTAAGGTTTTTTTTAAAGAAAAATTATAATTAAGTTTTTTAATTTCTGACATAAACAAAAATAAAGATTCTTATAAAGTGATGTGACAAATTAAAATTTGAATGATATTTTTTAACCGAAGTAAAATTCTGGCTCCGCATATTCCAAATGCATTCCACGATGCAAAATGTTGTTTTCCTTTTGGCTGTTGAGAGTCCTCGTACTATGATTCGATAATTTAATAGTAGTGGGGTAATGAGGAGATTGTTATAGCCTATAGGATTGCTGCACGTATTAAGTTTAAATCAATTAAGATATTTGGGATTAAAATTTTTCGCGGTCCTTCGAGATGACTTAGTTAGTTTAGAGGATATCATTTAGTTAGTTTAGAGGATAGTTGTTTATACGGATGACTCGAAATTGATTCTTCCTCAATAACTTCTGAGTCGAGCTTGTCGCATAGGGCTGCTTAGTGCAGTTTACACTCCCTGTGTGGTTTGCAGGCTATTACATAGTGGGAGTTTACCCAATGCACACAGAGTGCTCACCCAAAAAGGGCAGAGGCTATGGCAGAAGTTGTAGCGATTGCGAGTTATTTTGGGGTTAAAAAGAAAAGAAAAAAAATTCTGTGACATTTAAAAATTTATTATAATTTCGTCGACTATAGGCTAAATGTTTATACAATGAAAATAAATTTGTGTTATGAGGATTAATTCAAAATAGATAAATTTAAATTGAATCATTTTATTTTAGTTGATTTGGGAAATTCCTAACTTAATGAGGGTAATTTTCTTTATTATTGAATATGTTGATAATAATAGGTGTATATTTGATTTTCTAAAATTTTCACCATTTCGTAATTTAATCATAAAAATTAGAAAATATCTGACGGAGATTAAAAGGTCTTTGTAAGCTAGCTTCAGCCATTCCTTTACATTTTGTCCTCACAATGAAGAAAATAGTATGATTTGATCACTTGCAGATTAAAAATAGTAGAAGAAAATGACTACAAATGACAATTGATTTTGATACTCTAAGTCGATAACAAAGTTATCTCAAAATTATAGTCTTGAAATTTATTTATTTTACTTTTTAGATGAGATCAAATAACATTAAATTTGAGGTATAATTTTTTCTTAAATTTAGTTATCTCTTTAATTAAATAAAGCACTATAAATTTAATTTTAAATATAATAGTGAGATATCTTTATCTTATGAACCAAATATTTGAAAATATTAGCACAGGTGCCAACATTTTACTAGTAATGACATTGAATATCTCCTTTCAGTCTTCACATCGTTTAAATACTATACAAAATTATAGTATCAAATTAAATTAATATGATTTTTTTTTTTGGATTATGAATTCGCAATTTGAGTCTCTTAAATTGTATATTTTTCTTCATGATAACTTCACAAATTATGACTACTATCAAAAGTTTCAGTTTTTATACAATCCTACCAGATTTCTTAGTTAATATTATCAATTTATTATTTCCAATGTATTTACGTAAATTTCCCATAAGAAAAAAGTTCCAATCATTATAAAAGCAACTAATCTTTTGCATTGCATTATAATAACAGGAGGGGAAGATGTTTATGAATTGTTTTTTGGGAAAACTACTTGATAAGACCACATTCATATCATATATACTAATTCTATCTGTACTTTCTGATAACTATACATATTTTACTTAGCGGAATTAGATATTTTAATGAGGGTTTAAAATCTGAGAAGTAAACATACGAACTAGTGGGAGGGGGTTCGACATCTATTGTATATATCTAAAAAATAATTTTAATCATGTATAAATAGTAATACTTTTTCACCGACTACATCCGCCCCTGATCTTACTATCAATTAAGAATTTTCTATCATATATTGAGAAACATACACCTAGTTACATATATTTTTGCTATCAGAAATATAAAAATAGAGAAAGGTGAACAAGATTGTCATGCATCTCAGATAAATATGAATCACACCAAATACATGTATATCAATTTAGTGTGATTCAAATATATCTAGGATACCAAATAAATAGAAAAGTAACGAGCGAAATTTGTTATATATTTCATATACATGCGAATCCAATTGTAATCCTCGATGAGTCTGAATTGGATATGCCTTGTTTTGTAACTCTTTGGAGAAATCACTTACATCTTAATAATATTACTCACGTCTTATGAACACTATACACTCTTTTGCTTTAATTTATGTGACATTTTTTTCTTTCTTGAGAGTCAAATCTAAGTTTGATCAAGAATTTGCATATGAAAATTTTAATTCTTTTGAATGAAATTTATATATATTTGTAAACTACGTAAAAAATATTAAAATAAATTACAATATTTAAAAATTTATTAAAAAATTTAAATAAAATAAATTTATTTAAATCTTTAAATTTAAATCACGTAAATTAAAGGAGTATCAAGGACCACGGGATCATGTGCATGTTGTCCTAAAGCTACTATTGGGCCAAGTCACAAATTTGTCTTACGTATTATCCTCGTATTATTATTGGGATATAGATGACAAGTGAGCTGACATTTCAGTGTAACAACCAGTCTAGGAGCGTCCACATTTTATACATGGCAAGTTAGCAACAATCAATGTGAAAATATCCACCTTAAATCACTTGTAGATTTTTTTTATTACTCCTTCTGATTTATAAAGAATCTTGACATGGAGTTTAAAAAGTATAAAAAGAGTTTTGAATCTTGTTATCCTAAATTAAAATTAAGTTAAATGTAAAAAATTGTTCTTTGATCTTCTCACCTTAAATATATCACGTAAAAAATTAAAATTAAAATATTACAATAAAAAAAAGAGATTAATTTTTCTATAACAGACTAAAAAAAGAAAGGAGACTATTTTTTTAAAACCAAAAAAATGTGTCTTTTCAAGAACATAAATATGACAGTTTTTAAATTTCTTTTGTTTGTTATTTGTGCATGATTTGACTCGTGTGGCTCTTATGCCTTGATAAAACCAATATTTGTCTAAGAATATCTTGTGTTTTGAGTTTTATTTCCTTCATTTAGTAATTGTTATTCTTTCCGTCTCTAATTACTTATTCATTTTAAATTGATTTGTTCCTATAAATCATAAAGTGAACTAATTAAAATTTTAAGATTTTTAAAAAATTCTGTCTTTTTCAATATAATAAATTGAGGGTTTAATAAGTAAATTCTTTTTTATTCTTTTTTTATTTGTCAAAATGAACAAGTAATTAGGAACAACTAAGAAAAAGAAAATGGACAAATAATTAGGGACAGAAGGACTATTATTCACTCTCTCCATTTCATTTTGATTGTTTGGTGAGTAACTTGTCCTTTTCGTGTTTTCCAATTGCATAAGATGCTTTAATCTATTGCATACGTTCAATCAACCGTTGTCTTGTATTAACTTGACATGAATTTAAGAAAGTAGAGAAGAGTTTTGAATATTGTGATCTTAAATTAAAGACATGTAGAATATACCAAAATGTTATTTAATTATGTGGCTTTCAACATGTTGTGTGTATACTTTGCCAAACATTTCCAAAAGCTATTAATAAGTTTGACCAACTTTAAAATCAATCCAAACAGACTCATTAAACAAAAAATATAAGCATTATGTATTGGTAGTTAAAACAATTTTGATACTCCTTTGTTTTGAATTTTATATAGGTCATGTAACCAGCATGAGTTGTAATACAGTTATGATGAGATTGCTTTACTCTTGATTAGAGGTTTTGAGGTTTCGAATTTTTAACTTTGAATATTGAAAAAATCCTGTTAGAAGCGCCACTCCAAATGGTCTACTTGTCATGTGTAATTCAAGCAGTAAAATCCACAGAATCAACCTAGATATGATGCATCAACATAGCTTATGTACATCTTCTTAGAATACGACTCTTTCCAGAACCCTGCATGATCACAAGTTTATTCATGCACTTAACTACCTTCTTGACTAGCAACTTGATTGCTTTCTTTTGTTTTAGAGAAAATGGAATAAGAAATTCTTATACATTGTGTATTGTTGATTTTGCAGATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAAATTCCTCTTTAACTTCTTCTCCCTCACTATCCTCGGCGCTGATCCATCTGTCTCCCCAGAAATCGCCAATTCTGGCTACATCTTTCTTGATTCATGGCTAGCTATTCAATTAGCACCTACTGTCAGCA-TTGGTGTCCTTCAACCTCTTGAAGAAATTTTAGTCCATTCTTTTGCATACCCTTTTTTTCTTGTCAAAGGTAATTATGAAAAACTCGTTCAATTCGTCAAAAATGAAGCCAAGG-AAGTTTTAAGCAGGGCACAAACAGAGTTTCAACTCACAGAACAAGAAGCCATTCATAA-CCTTTTGTTCATTC-TTGGGTTCAATG-C-TTTTGGTGGC-TTCTCCATTTTCTTGCCAACTCTTTTGGG</genome_strand>
        <mrna_strand>TCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAAATTCCTCTTTAACTTCTTCTCCCTCACTATCCTCGGCGCTGATCCATCTGTCTCCCCAGAAATCGCCAATTCTGGCTACATCTTTCTTGATTCATGGCTAGCTATTCAATTAGCACCTACTGTCAGCATTTGGTGTCCTTCAACCTCTTGAAGAAATTTTAGTCCATTCTTTTGCATACCCTTTTTTTCTTGTCAAAGGTAATTATGAAAAACTCGTTCAATTCGTCAAAAATGAAGCCAAGGNAAGTTTTAAGCAGGGCACANACAGAGTTTCAACTCACAGAACAAGAAGCCATTCATAACCCTTTTGTTCATTCTTTGGGTTCAATGCCTTTTTGGTGGCTTTCTCCATTTTCTTGCCAACTCTTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296163" ref_strand="+" ref_description="SGN-E296163 [cLET-24-J14]">
      <seq>ttccgtttttcggtagtgtgaatccaaatgtggtggcggttttagatgtgaaatcgttttcgcatctgtttgatatggagattgtagagaaagctaatgtgcttgttggggatttcatgcccagtgttgtttatactggagatatgcgtgtttgtgcttatctcgatacttctgaacctaaacatgcccagattaagaatttttcacaggatattctaaaaagaggctcaaaaacatgggtgcctacactacttaaagagcttgatacaatgtttacaacttttgaagcagatctttcaaaatccaatacagcttctcttcttcctgcactccaaaaattcctctttaacttcttctccctcactatcctcggcgctgatccatctgtctccccagaaatcgccaattctggctacatctttcttgattcatggctagctattcaattagcacctactgtcagcattggtgtccttcaacctcttgaagaaattttagtccattcttttgcataccctttttttcttgtcaaaggtaattatgaaaaactcgttcaattcgtcaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25161" stop="30852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25461" g_stop="25651" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25652" i_stop="30174" i_length="4523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30175" g_stop="30552" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="569" r_length="378" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E296163" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25461" e_stop="25651"/>
          <exon e_start="30175" e_stop="30552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAGGTACACTTTTTCATCTCCCTGAATTATGCAAAAATCAACCATGAAAATTGTTTGAACACAGACTTGTTAGTTGAATTTCGGATTAGAAAAAACTTCCAAAAACATATTTTCACCGACAGAAATTCATAAATATCTCTGATTTGTATTCATGTGTAAACACAATTTCAATAGTATCTACTCGAATTCACACGATTTTTTTCGAGGCTTGCGCTCAAAGTCCGTTAAAATCTGTTTGGATTGACTTAAAAAGATAGATCAAATCTACTTTTAATTGAATTTTTAATTTTTAAAAGTAATTGATAAACATAAAAAAATATTTAAAATAAATTACAAAGTAAAATAAAAATTAACTTAAAATAAATTAGAAATCAAAAATAAACTTTTTATATTTTGATTATAAAATTATTTTAATTTGATTTTTTTATTTTTAACTTAAAAACTATTTTTTTAAAGTTAAATCTAAACTGGTTAATTTGGGGAAAGGTGATTAATATGTTGAATATCAAAATTAAGGTTTTTTTTAAAGAAAAATTATAATTAAGTTTTTTAATTTCTGACATAAACAAAAATAAAGATTCTTATAAAGTGATGTGACAAATTAAAATTTGAATGATATTTTTTAACCGAAGTAAAATTCTGGCTCCGCATATTCCAAATGCATTCCACGATGCAAAATGTTGTTTTCCTTTTGGCTGTTGAGAGTCCTCGTACTATGATTCGATAATTTAATAGTAGTGGGGTAATGAGGAGATTGTTATAGCCTATAGGATTGCTGCACGTATTAAGTTTAAATCAATTAAGATATTTGGGATTAAAATTTTTCGCGGTCCTTCGAGATGACTTAGTTAGTTTAGAGGATATCATTTAGTTAGTTTAGAGGATAGTTGTTTATACGGATGACTCGAAATTGATTCTTCCTCAATAACTTCTGAGTCGAGCTTGTCGCATAGGGCTGCTTAGTGCAGTTTACACTCCCTGTGTGGTTTGCAGGCTATTACATAGTGGGAGTTTACCCAATGCACACAGAGTGCTCACCCAAAAAGGGCAGAGGCTATGGCAGAAGTTGTAGCGATTGCGAGTTATTTTGGGGTTAAAAAGAAAAGAAAAAAAATTCTGTGACATTTAAAAATTTATTATAATTTCGTCGACTATAGGCTAAATGTTTATACAATGAAAATAAATTTGTGTTATGAGGATTAATTCAAAATAGATAAATTTAAATTGAATCATTTTATTTTAGTTGATTTGGGAAATTCCTAACTTAATGAGGGTAATTTTCTTTATTATTGAATATGTTGATAATAATAGGTGTATATTTGATTTTCTAAAATTTTCACCATTTCGTAATTTAATCATAAAAATTAGAAAATATCTGACGGAGATTAAAAGGTCTTTGTAAGCTAGCTTCAGCCATTCCTTTACATTTTGTCCTCACAATGAAGAAAATAGTATGATTTGATCACTTGCAGATTAAAAATAGTAGAAGAAAATGACTACAAATGACAATTGATTTTGATACTCTAAGTCGATAACAAAGTTATCTCAAAATTATAGTCTTGAAATTTATTTATTTTACTTTTTAGATGAGATCAAATAACATTAAATTTGAGGTATAATTTTTTCTTAAATTTAGTTATCTCTTTAATTAAATAAAGCACTATAAATTTAATTTTAAATATAATAGTGAGATATCTTTATCTTATGAACCAAATATTTGAAAATATTAGCACAGGTGCCAACATTTTACTAGTAATGACATTGAATATCTCCTTTCAGTCTTCACATCGTTTAAATACTATACAAAATTATAGTATCAAATTAAATTAATATGATTTTTTTTTTTGGATTATGAATTCGCAATTTGAGTCTCTTAAATTGTATATTTTTCTTCATGATAACTTCACAAATTATGACTACTATCAAAAGTTTCAGTTTTTATACAATCCTACCAGATTTCTTAGTTAATATTATCAATTTATTATTTCCAATGTATTTACGTAAATTTCCCATAAGAAAAAAGTTCCAATCATTATAAAAGCAACTAATCTTTTGCATTGCATTATAATAACAGGAGGGGAAGATGTTTATGAATTGTTTTTTGGGAAAACTACTTGATAAGACCACATTCATATCATATATACTAATTCTATCTGTACTTTCTGATAACTATACATATTTTACTTAGCGGAATTAGATATTTTAATGAGGGTTTAAAATCTGAGAAGTAAACATACGAACTAGTGGGAGGGGGTTCGACATCTATTGTATATATCTAAAAAATAATTTTAATCATGTATAAATAGTAATACTTTTTCACCGACTACATCCGCCCCTGATCTTACTATCAATTAAGAATTTTCTATCATATATTGAGAAACATACACCTAGTTACATATATTTTTGCTATCAGAAATATAAAAATAGAGAAAGGTGAACAAGATTGTCATGCATCTCAGATAAATATGAATCACACCAAATACATGTATATCAATTTAGTGTGATTCAAATATATCTAGGATACCAAATAAATAGAAAAGTAACGAGCGAAATTTGTTATATATTTCATATACATGCGAATCCAATTGTAATCCTCGATGAGTCTGAATTGGATATGCCTTGTTTTGTAACTCTTTGGAGAAATCACTTACATCTTAATAATATTACTCACGTCTTATGAACACTATACACTCTTTTGCTTTAATTTATGTGACATTTTTTTCTTTCTTGAGAGTCAAATCTAAGTTTGATCAAGAATTTGCATATGAAAATTTTAATTCTTTTGAATGAAATTTATATATATTTGTAAACTACGTAAAAAATATTAAAATAAATTACAATATTTAAAAATTTATTAAAAAATTTAAATAAAATAAATTTATTTAAATCTTTAAATTTAAATCACGTAAATTAAAGGAGTATCAAGGACCACGGGATCATGTGCATGTTGTCCTAAAGCTACTATTGGGCCAAGTCACAAATTTGTCTTACGTATTATCCTCGTATTATTATTGGGATATAGATGACAAGTGAGCTGACATTTCAGTGTAACAACCAGTCTAGGAGCGTCCACATTTTATACATGGCAAGTTAGCAACAATCAATGTGAAAATATCCACCTTAAATCACTTGTAGATTTTTTTTATTACTCCTTCTGATTTATAAAGAATCTTGACATGGAGTTTAAAAAGTATAAAAAGAGTTTTGAATCTTGTTATCCTAAATTAAAATTAAGTTAAATGTAAAAAATTGTTCTTTGATCTTCTCACCTTAAATATATCACGTAAAAAATTAAAATTAAAATATTACAATAAAAAAAAGAGATTAATTTTTCTATAACAGACTAAAAAAAGAAAGGAGACTATTTTTTTAAAACCAAAAAAATGTGTCTTTTCAAGAACATAAATATGACAGTTTTTAAATTTCTTTTGTTTGTTATTTGTGCATGATTTGACTCGTGTGGCTCTTATGCCTTGATAAAACCAATATTTGTCTAAGAATATCTTGTGTTTTGAGTTTTATTTCCTTCATTTAGTAATTGTTATTCTTTCCGTCTCTAATTACTTATTCATTTTAAATTGATTTGTTCCTATAAATCATAAAGTGAACTAATTAAAATTTTAAGATTTTTAAAAAATTCTGTCTTTTTCAATATAATAAATTGAGGGTTTAATAAGTAAATTCTTTTTTATTCTTTTTTTATTTGTCAAAATGAACAAGTAATTAGGAACAACTAAGAAAAAGAAAATGGACAAATAATTAGGGACAGAAGGACTATTATTCACTCTCTCCATTTCATTTTGATTGTTTGGTGAGTAACTTGTCCTTTTCGTGTTTTCCAATTGCATAAGATGCTTTAATCTATTGCATACGTTCAATCAACCGTTGTCTTGTATTAACTTGACATGAATTTAAGAAAGTAGAGAAGAGTTTTGAATATTGTGATCTTAAATTAAAGACATGTAGAATATACCAAAATGTTATTTAATTATGTGGCTTTCAACATGTTGTGTGTATACTTTGCCAAACATTTCCAAAAGCTATTAATAAGTTTGACCAACTTTAAAATCAATCCAAACAGACTCATTAAACAAAAAATATAAGCATTATGTATTGGTAGTTAAAACAATTTTGATACTCCTTTGTTTTGAATTTTATATAGGTCATGTAACCAGCATGAGTTGTAATACAGTTATGATGAGATTGCTTTACTCTTGATTAGAGGTTTTGAGGTTTCGAATTTTTAACTTTGAATATTGAAAAAATCCTGTTAGAAGCGCCACTCCAAATGGTCTACTTGTCATGTGTAATTCAAGCAGTAAAATCCACAGAATCAACCTAGATATGATGCATCAACATAGCTTATGTACATCTTCTTAGAATACGACTCTTTCCAGAACCCTGCATGATCACAAGTTTATTCATGCACTTAACTACCTTCTTGACTAGCAACTTGATTGCTTTCTTTTGTTTTAGAGAAAATGGAATAAGAAATTCTTATACATTGTGTATTGTTGATTTTGCAGATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAAATTCCTCTTTAACTTCTTCTCCCTCACTATCCTCGGCGCTGATCCATCTGTCTCCCCAGAAATCGCCAATTCTGGCTACATCTTTCTTGATTCATGGCTAGCTATTCAATTAGCACCTACTGTCAGCATTGGTGTCCTTCAACCTCTTGAAGAAATTTTAGTCCATTCTTTTGCATACCCTTTTTTTCTTGTCAAAGGTAATTATGAAAAACTCGTTCAATTCGTCAAAAAT</genome_strand>
        <mrna_strand>TTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAAATTCCTCTTTAACTTCTTCTCCCTCACTATCCTCGGCGCTGATCCATCTGTCTCCCCAGAAATCGCCAATTCTGGCTACATCTTTCTTGATTCATGGCTAGCTATTCAATTAGCACCTACTGTCAGCATTGGTGTCCTTCAACCTCTTGAAGAAATTTTAGTCCATTCTTTTGCATACCCTTTTTTTCTTGTCAAAGGTAATTATGAAAAACTCGTTCAATTCGTCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291536" ref_strand="+" ref_description="SGN-E291536 [cLET-6-A4]">
      <seq>ttccgtttttcggtagtgtgaatccaaatgtggtggcggttttagatgtgaaatcgttttcgcatctgtttgatatggagattgtagagaaagctaatgtgcttgttggggatttcatgcccagtgttgtttatactggagatatgcgtgtttgtgcttatctcgatacttctgaacctaaacatgcccagattaagaatttttcacaggatattctaaaaagaggctcaaaaacatgggtgcctacactacttaaagagcttgatacaatgtttacaacttttgaagcagatctttcaaaatccaatacagcttctcttcttcctgcactccaaaaattcctctttaacttcttctccctcactatcctcggcgctgatccatctgtctacccagaaatcgccaattctggctacatctttcttgattcatggctagctattcaattagcacctactgtcagcattggtgtccttcaacctcttgaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25161" stop="30775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25461" g_stop="25651" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25652" i_stop="30174" i_length="4523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30175" g_stop="30475" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="492" r_length="301" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E291536" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25461" e_stop="25651"/>
          <exon e_start="30175" e_stop="30475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAGGTACACTTTTTCATCTCCCTGAATTATGCAAAAATCAACCATGAAAATTGTTTGAACACAGACTTGTTAGTTGAATTTCGGATTAGAAAAAACTTCCAAAAACATATTTTCACCGACAGAAATTCATAAATATCTCTGATTTGTATTCATGTGTAAACACAATTTCAATAGTATCTACTCGAATTCACACGATTTTTTTCGAGGCTTGCGCTCAAAGTCCGTTAAAATCTGTTTGGATTGACTTAAAAAGATAGATCAAATCTACTTTTAATTGAATTTTTAATTTTTAAAAGTAATTGATAAACATAAAAAAATATTTAAAATAAATTACAAAGTAAAATAAAAATTAACTTAAAATAAATTAGAAATCAAAAATAAACTTTTTATATTTTGATTATAAAATTATTTTAATTTGATTTTTTTATTTTTAACTTAAAAACTATTTTTTTAAAGTTAAATCTAAACTGGTTAATTTGGGGAAAGGTGATTAATATGTTGAATATCAAAATTAAGGTTTTTTTTAAAGAAAAATTATAATTAAGTTTTTTAATTTCTGACATAAACAAAAATAAAGATTCTTATAAAGTGATGTGACAAATTAAAATTTGAATGATATTTTTTAACCGAAGTAAAATTCTGGCTCCGCATATTCCAAATGCATTCCACGATGCAAAATGTTGTTTTCCTTTTGGCTGTTGAGAGTCCTCGTACTATGATTCGATAATTTAATAGTAGTGGGGTAATGAGGAGATTGTTATAGCCTATAGGATTGCTGCACGTATTAAGTTTAAATCAATTAAGATATTTGGGATTAAAATTTTTCGCGGTCCTTCGAGATGACTTAGTTAGTTTAGAGGATATCATTTAGTTAGTTTAGAGGATAGTTGTTTATACGGATGACTCGAAATTGATTCTTCCTCAATAACTTCTGAGTCGAGCTTGTCGCATAGGGCTGCTTAGTGCAGTTTACACTCCCTGTGTGGTTTGCAGGCTATTACATAGTGGGAGTTTACCCAATGCACACAGAGTGCTCACCCAAAAAGGGCAGAGGCTATGGCAGAAGTTGTAGCGATTGCGAGTTATTTTGGGGTTAAAAAGAAAAGAAAAAAAATTCTGTGACATTTAAAAATTTATTATAATTTCGTCGACTATAGGCTAAATGTTTATACAATGAAAATAAATTTGTGTTATGAGGATTAATTCAAAATAGATAAATTTAAATTGAATCATTTTATTTTAGTTGATTTGGGAAATTCCTAACTTAATGAGGGTAATTTTCTTTATTATTGAATATGTTGATAATAATAGGTGTATATTTGATTTTCTAAAATTTTCACCATTTCGTAATTTAATCATAAAAATTAGAAAATATCTGACGGAGATTAAAAGGTCTTTGTAAGCTAGCTTCAGCCATTCCTTTACATTTTGTCCTCACAATGAAGAAAATAGTATGATTTGATCACTTGCAGATTAAAAATAGTAGAAGAAAATGACTACAAATGACAATTGATTTTGATACTCTAAGTCGATAACAAAGTTATCTCAAAATTATAGTCTTGAAATTTATTTATTTTACTTTTTAGATGAGATCAAATAACATTAAATTTGAGGTATAATTTTTTCTTAAATTTAGTTATCTCTTTAATTAAATAAAGCACTATAAATTTAATTTTAAATATAATAGTGAGATATCTTTATCTTATGAACCAAATATTTGAAAATATTAGCACAGGTGCCAACATTTTACTAGTAATGACATTGAATATCTCCTTTCAGTCTTCACATCGTTTAAATACTATACAAAATTATAGTATCAAATTAAATTAATATGATTTTTTTTTTTGGATTATGAATTCGCAATTTGAGTCTCTTAAATTGTATATTTTTCTTCATGATAACTTCACAAATTATGACTACTATCAAAAGTTTCAGTTTTTATACAATCCTACCAGATTTCTTAGTTAATATTATCAATTTATTATTTCCAATGTATTTACGTAAATTTCCCATAAGAAAAAAGTTCCAATCATTATAAAAGCAACTAATCTTTTGCATTGCATTATAATAACAGGAGGGGAAGATGTTTATGAATTGTTTTTTGGGAAAACTACTTGATAAGACCACATTCATATCATATATACTAATTCTATCTGTACTTTCTGATAACTATACATATTTTACTTAGCGGAATTAGATATTTTAATGAGGGTTTAAAATCTGAGAAGTAAACATACGAACTAGTGGGAGGGGGTTCGACATCTATTGTATATATCTAAAAAATAATTTTAATCATGTATAAATAGTAATACTTTTTCACCGACTACATCCGCCCCTGATCTTACTATCAATTAAGAATTTTCTATCATATATTGAGAAACATACACCTAGTTACATATATTTTTGCTATCAGAAATATAAAAATAGAGAAAGGTGAACAAGATTGTCATGCATCTCAGATAAATATGAATCACACCAAATACATGTATATCAATTTAGTGTGATTCAAATATATCTAGGATACCAAATAAATAGAAAAGTAACGAGCGAAATTTGTTATATATTTCATATACATGCGAATCCAATTGTAATCCTCGATGAGTCTGAATTGGATATGCCTTGTTTTGTAACTCTTTGGAGAAATCACTTACATCTTAATAATATTACTCACGTCTTATGAACACTATACACTCTTTTGCTTTAATTTATGTGACATTTTTTTCTTTCTTGAGAGTCAAATCTAAGTTTGATCAAGAATTTGCATATGAAAATTTTAATTCTTTTGAATGAAATTTATATATATTTGTAAACTACGTAAAAAATATTAAAATAAATTACAATATTTAAAAATTTATTAAAAAATTTAAATAAAATAAATTTATTTAAATCTTTAAATTTAAATCACGTAAATTAAAGGAGTATCAAGGACCACGGGATCATGTGCATGTTGTCCTAAAGCTACTATTGGGCCAAGTCACAAATTTGTCTTACGTATTATCCTCGTATTATTATTGGGATATAGATGACAAGTGAGCTGACATTTCAGTGTAACAACCAGTCTAGGAGCGTCCACATTTTATACATGGCAAGTTAGCAACAATCAATGTGAAAATATCCACCTTAAATCACTTGTAGATTTTTTTTATTACTCCTTCTGATTTATAAAGAATCTTGACATGGAGTTTAAAAAGTATAAAAAGAGTTTTGAATCTTGTTATCCTAAATTAAAATTAAGTTAAATGTAAAAAATTGTTCTTTGATCTTCTCACCTTAAATATATCACGTAAAAAATTAAAATTAAAATATTACAATAAAAAAAAGAGATTAATTTTTCTATAACAGACTAAAAAAAGAAAGGAGACTATTTTTTTAAAACCAAAAAAATGTGTCTTTTCAAGAACATAAATATGACAGTTTTTAAATTTCTTTTGTTTGTTATTTGTGCATGATTTGACTCGTGTGGCTCTTATGCCTTGATAAAACCAATATTTGTCTAAGAATATCTTGTGTTTTGAGTTTTATTTCCTTCATTTAGTAATTGTTATTCTTTCCGTCTCTAATTACTTATTCATTTTAAATTGATTTGTTCCTATAAATCATAAAGTGAACTAATTAAAATTTTAAGATTTTTAAAAAATTCTGTCTTTTTCAATATAATAAATTGAGGGTTTAATAAGTAAATTCTTTTTTATTCTTTTTTTATTTGTCAAAATGAACAAGTAATTAGGAACAACTAAGAAAAAGAAAATGGACAAATAATTAGGGACAGAAGGACTATTATTCACTCTCTCCATTTCATTTTGATTGTTTGGTGAGTAACTTGTCCTTTTCGTGTTTTCCAATTGCATAAGATGCTTTAATCTATTGCATACGTTCAATCAACCGTTGTCTTGTATTAACTTGACATGAATTTAAGAAAGTAGAGAAGAGTTTTGAATATTGTGATCTTAAATTAAAGACATGTAGAATATACCAAAATGTTATTTAATTATGTGGCTTTCAACATGTTGTGTGTATACTTTGCCAAACATTTCCAAAAGCTATTAATAAGTTTGACCAACTTTAAAATCAATCCAAACAGACTCATTAAACAAAAAATATAAGCATTATGTATTGGTAGTTAAAACAATTTTGATACTCCTTTGTTTTGAATTTTATATAGGTCATGTAACCAGCATGAGTTGTAATACAGTTATGATGAGATTGCTTTACTCTTGATTAGAGGTTTTGAGGTTTCGAATTTTTAACTTTGAATATTGAAAAAATCCTGTTAGAAGCGCCACTCCAAATGGTCTACTTGTCATGTGTAATTCAAGCAGTAAAATCCACAGAATCAACCTAGATATGATGCATCAACATAGCTTATGTACATCTTCTTAGAATACGACTCTTTCCAGAACCCTGCATGATCACAAGTTTATTCATGCACTTAACTACCTTCTTGACTAGCAACTTGATTGCTTTCTTTTGTTTTAGAGAAAATGGAATAAGAAATTCTTATACATTGTGTATTGTTGATTTTGCAGATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAAATTCCTCTTTAACTTCTTCTCCCTCACTATCCTCGGCGCTGATCCATCTGTCTCCCCAGAAATCGCCAATTCTGGCTACATCTTTCTTGATTCATGGCTAGCTATTCAATTAGCACCTACTGTCAGCATTGGTGTCCTTCAACCTCTTGAAGAAA</genome_strand>
        <mrna_strand>TTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAAATTCCTCTTTAACTTCTTCTCCCTCACTATCCTCGGCGCTGATCCATCTGTCTACCCAGAAATCGCCAATTCTGGCTACATCTTTCTTGATTCATGGCTAGCTATTCAATTAGCACCTACTGTCAGCATTGGTGTCCTTCAACCTCTTGAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296934" ref_strand="+" ref_description="SGN-E296934 [cLET-26-D11]">
      <seq>gtttttcggtagtgtgaatccaaatgtggtggcggttttagatgtgaaatcgttttcgcatctgtttgatatggagattgtagagaaagctaatgtgcttgttggggatttcatgcccagtgttgcttatactggagatatgcgtgtttgtgcttatctcgatacttctgaacctaaacatgcccagattaagaatttttcacaggatattctaaaaagaggctcaaaaacatgggtgcctacactacttaaagagcttgatacaatgtttacaacttttgaagcagatctttcaaaatccaataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25165" stop="30594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25465" g_stop="25651" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25652" i_stop="30174" i_length="4523">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30175" g_stop="30294" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="307" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E296934" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25465" e_stop="25651"/>
          <exon e_start="30175" e_stop="30294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAGGTACACTTTTTCATCTCCCTGAATTATGCAAAAATCAACCATGAAAATTGTTTGAACACAGACTTGTTAGTTGAATTTCGGATTAGAAAAAACTTCCAAAAACATATTTTCACCGACAGAAATTCATAAATATCTCTGATTTGTATTCATGTGTAAACACAATTTCAATAGTATCTACTCGAATTCACACGATTTTTTTCGAGGCTTGCGCTCAAAGTCCGTTAAAATCTGTTTGGATTGACTTAAAAAGATAGATCAAATCTACTTTTAATTGAATTTTTAATTTTTAAAAGTAATTGATAAACATAAAAAAATATTTAAAATAAATTACAAAGTAAAATAAAAATTAACTTAAAATAAATTAGAAATCAAAAATAAACTTTTTATATTTTGATTATAAAATTATTTTAATTTGATTTTTTTATTTTTAACTTAAAAACTATTTTTTTAAAGTTAAATCTAAACTGGTTAATTTGGGGAAAGGTGATTAATATGTTGAATATCAAAATTAAGGTTTTTTTTAAAGAAAAATTATAATTAAGTTTTTTAATTTCTGACATAAACAAAAATAAAGATTCTTATAAAGTGATGTGACAAATTAAAATTTGAATGATATTTTTTAACCGAAGTAAAATTCTGGCTCCGCATATTCCAAATGCATTCCACGATGCAAAATGTTGTTTTCCTTTTGGCTGTTGAGAGTCCTCGTACTATGATTCGATAATTTAATAGTAGTGGGGTAATGAGGAGATTGTTATAGCCTATAGGATTGCTGCACGTATTAAGTTTAAATCAATTAAGATATTTGGGATTAAAATTTTTCGCGGTCCTTCGAGATGACTTAGTTAGTTTAGAGGATATCATTTAGTTAGTTTAGAGGATAGTTGTTTATACGGATGACTCGAAATTGATTCTTCCTCAATAACTTCTGAGTCGAGCTTGTCGCATAGGGCTGCTTAGTGCAGTTTACACTCCCTGTGTGGTTTGCAGGCTATTACATAGTGGGAGTTTACCCAATGCACACAGAGTGCTCACCCAAAAAGGGCAGAGGCTATGGCAGAAGTTGTAGCGATTGCGAGTTATTTTGGGGTTAAAAAGAAAAGAAAAAAAATTCTGTGACATTTAAAAATTTATTATAATTTCGTCGACTATAGGCTAAATGTTTATACAATGAAAATAAATTTGTGTTATGAGGATTAATTCAAAATAGATAAATTTAAATTGAATCATTTTATTTTAGTTGATTTGGGAAATTCCTAACTTAATGAGGGTAATTTTCTTTATTATTGAATATGTTGATAATAATAGGTGTATATTTGATTTTCTAAAATTTTCACCATTTCGTAATTTAATCATAAAAATTAGAAAATATCTGACGGAGATTAAAAGGTCTTTGTAAGCTAGCTTCAGCCATTCCTTTACATTTTGTCCTCACAATGAAGAAAATAGTATGATTTGATCACTTGCAGATTAAAAATAGTAGAAGAAAATGACTACAAATGACAATTGATTTTGATACTCTAAGTCGATAACAAAGTTATCTCAAAATTATAGTCTTGAAATTTATTTATTTTACTTTTTAGATGAGATCAAATAACATTAAATTTGAGGTATAATTTTTTCTTAAATTTAGTTATCTCTTTAATTAAATAAAGCACTATAAATTTAATTTTAAATATAATAGTGAGATATCTTTATCTTATGAACCAAATATTTGAAAATATTAGCACAGGTGCCAACATTTTACTAGTAATGACATTGAATATCTCCTTTCAGTCTTCACATCGTTTAAATACTATACAAAATTATAGTATCAAATTAAATTAATATGATTTTTTTTTTTGGATTATGAATTCGCAATTTGAGTCTCTTAAATTGTATATTTTTCTTCATGATAACTTCACAAATTATGACTACTATCAAAAGTTTCAGTTTTTATACAATCCTACCAGATTTCTTAGTTAATATTATCAATTTATTATTTCCAATGTATTTACGTAAATTTCCCATAAGAAAAAAGTTCCAATCATTATAAAAGCAACTAATCTTTTGCATTGCATTATAATAACAGGAGGGGAAGATGTTTATGAATTGTTTTTTGGGAAAACTACTTGATAAGACCACATTCATATCATATATACTAATTCTATCTGTACTTTCTGATAACTATACATATTTTACTTAGCGGAATTAGATATTTTAATGAGGGTTTAAAATCTGAGAAGTAAACATACGAACTAGTGGGAGGGGGTTCGACATCTATTGTATATATCTAAAAAATAATTTTAATCATGTATAAATAGTAATACTTTTTCACCGACTACATCCGCCCCTGATCTTACTATCAATTAAGAATTTTCTATCATATATTGAGAAACATACACCTAGTTACATATATTTTTGCTATCAGAAATATAAAAATAGAGAAAGGTGAACAAGATTGTCATGCATCTCAGATAAATATGAATCACACCAAATACATGTATATCAATTTAGTGTGATTCAAATATATCTAGGATACCAAATAAATAGAAAAGTAACGAGCGAAATTTGTTATATATTTCATATACATGCGAATCCAATTGTAATCCTCGATGAGTCTGAATTGGATATGCCTTGTTTTGTAACTCTTTGGAGAAATCACTTACATCTTAATAATATTACTCACGTCTTATGAACACTATACACTCTTTTGCTTTAATTTATGTGACATTTTTTTCTTTCTTGAGAGTCAAATCTAAGTTTGATCAAGAATTTGCATATGAAAATTTTAATTCTTTTGAATGAAATTTATATATATTTGTAAACTACGTAAAAAATATTAAAATAAATTACAATATTTAAAAATTTATTAAAAAATTTAAATAAAATAAATTTATTTAAATCTTTAAATTTAAATCACGTAAATTAAAGGAGTATCAAGGACCACGGGATCATGTGCATGTTGTCCTAAAGCTACTATTGGGCCAAGTCACAAATTTGTCTTACGTATTATCCTCGTATTATTATTGGGATATAGATGACAAGTGAGCTGACATTTCAGTGTAACAACCAGTCTAGGAGCGTCCACATTTTATACATGGCAAGTTAGCAACAATCAATGTGAAAATATCCACCTTAAATCACTTGTAGATTTTTTTTATTACTCCTTCTGATTTATAAAGAATCTTGACATGGAGTTTAAAAAGTATAAAAAGAGTTTTGAATCTTGTTATCCTAAATTAAAATTAAGTTAAATGTAAAAAATTGTTCTTTGATCTTCTCACCTTAAATATATCACGTAAAAAATTAAAATTAAAATATTACAATAAAAAAAAGAGATTAATTTTTCTATAACAGACTAAAAAAAGAAAGGAGACTATTTTTTTAAAACCAAAAAAATGTGTCTTTTCAAGAACATAAATATGACAGTTTTTAAATTTCTTTTGTTTGTTATTTGTGCATGATTTGACTCGTGTGGCTCTTATGCCTTGATAAAACCAATATTTGTCTAAGAATATCTTGTGTTTTGAGTTTTATTTCCTTCATTTAGTAATTGTTATTCTTTCCGTCTCTAATTACTTATTCATTTTAAATTGATTTGTTCCTATAAATCATAAAGTGAACTAATTAAAATTTTAAGATTTTTAAAAAATTCTGTCTTTTTCAATATAATAAATTGAGGGTTTAATAAGTAAATTCTTTTTTATTCTTTTTTTATTTGTCAAAATGAACAAGTAATTAGGAACAACTAAGAAAAAGAAAATGGACAAATAATTAGGGACAGAAGGACTATTATTCACTCTCTCCATTTCATTTTGATTGTTTGGTGAGTAACTTGTCCTTTTCGTGTTTTCCAATTGCATAAGATGCTTTAATCTATTGCATACGTTCAATCAACCGTTGTCTTGTATTAACTTGACATGAATTTAAGAAAGTAGAGAAGAGTTTTGAATATTGTGATCTTAAATTAAAGACATGTAGAATATACCAAAATGTTATTTAATTATGTGGCTTTCAACATGTTGTGTGTATACTTTGCCAAACATTTCCAAAAGCTATTAATAAGTTTGACCAACTTTAAAATCAATCCAAACAGACTCATTAAACAAAAAATATAAGCATTATGTATTGGTAGTTAAAACAATTTTGATACTCCTTTGTTTTGAATTTTATATAGGTCATGTAACCAGCATGAGTTGTAATACAGTTATGATGAGATTGCTTTACTCTTGATTAGAGGTTTTGAGGTTTCGAATTTTTAACTTTGAATATTGAAAAAATCCTGTTAGAAGCGCCACTCCAAATGGTCTACTTGTCATGTGTAATTCAAGCAGTAAAATCCACAGAATCAACCTAGATATGATGCATCAACATAGCTTATGTACATCTTCTTAGAATACGACTCTTTCCAGAACCCTGCATGATCACAAGTTTATTCATGCACTTAACTACCTTCTTGACTAGCAACTTGATTGCTTTCTTTTGTTTTAGAGAAAATGGAATAAGAAATTCTTATACATTGTGTATTGTTGATTTTGCAGATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACA</genome_strand>
        <mrna_strand>GTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGCTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358523" ref_strand="+" ref_description="SGN-E358523 [cLHT-22-I3]">
      <seq>agctaatgtgcttgttggggatttcatgcccagtgctgtttatactggagatatgcgtgtttgtgcttatctcgatccttctgaacctaaacatgcccagattaagaattttacactggatcttctaaaaagaggctcaaaaacatgggtgcctacactacttaaagagcttaatacaatgtttacaacttttgaagcagatctttcaaaatccaatacagcttctattcttcctgcactccaaaaattcctctttaacttcttctccctcactatcctcggcgctgatccatcagtctccccggaaatcgccaattctggctacatctttcttgattcatggctagctattcaattagcacctactgtcagcattggtgtccttcaacctcttgaagaaattttagtccattcttttgcataccctttttttcttgtcaaaggtaattatgaaaaactcgttcaattcgtcaaaaatgaagccaaggaagttttaagcagggcacaaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="25252" stop="30886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25552" g_stop="25651" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25652" i_stop="30174" i_length="4523">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30175" g_stop="30586" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="512" r_length="412" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E358523" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25552" e_stop="25651"/>
          <exon e_start="30175" e_stop="30586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAGGTACACTTTTTCATCTCCCTGAATTATGCAAAAATCAACCATGAAAATTGTTTGAACACAGACTTGTTAGTTGAATTTCGGATTAGAAAAAACTTCCAAAAACATATTTTCACCGACAGAAATTCATAAATATCTCTGATTTGTATTCATGTGTAAACACAATTTCAATAGTATCTACTCGAATTCACACGATTTTTTTCGAGGCTTGCGCTCAAAGTCCGTTAAAATCTGTTTGGATTGACTTAAAAAGATAGATCAAATCTACTTTTAATTGAATTTTTAATTTTTAAAAGTAATTGATAAACATAAAAAAATATTTAAAATAAATTACAAAGTAAAATAAAAATTAACTTAAAATAAATTAGAAATCAAAAATAAACTTTTTATATTTTGATTATAAAATTATTTTAATTTGATTTTTTTATTTTTAACTTAAAAACTATTTTTTTAAAGTTAAATCTAAACTGGTTAATTTGGGGAAAGGTGATTAATATGTTGAATATCAAAATTAAGGTTTTTTTTAAAGAAAAATTATAATTAAGTTTTTTAATTTCTGACATAAACAAAAATAAAGATTCTTATAAAGTGATGTGACAAATTAAAATTTGAATGATATTTTTTAACCGAAGTAAAATTCTGGCTCCGCATATTCCAAATGCATTCCACGATGCAAAATGTTGTTTTCCTTTTGGCTGTTGAGAGTCCTCGTACTATGATTCGATAATTTAATAGTAGTGGGGTAATGAGGAGATTGTTATAGCCTATAGGATTGCTGCACGTATTAAGTTTAAATCAATTAAGATATTTGGGATTAAAATTTTTCGCGGTCCTTCGAGATGACTTAGTTAGTTTAGAGGATATCATTTAGTTAGTTTAGAGGATAGTTGTTTATACGGATGACTCGAAATTGATTCTTCCTCAATAACTTCTGAGTCGAGCTTGTCGCATAGGGCTGCTTAGTGCAGTTTACACTCCCTGTGTGGTTTGCAGGCTATTACATAGTGGGAGTTTACCCAATGCACACAGAGTGCTCACCCAAAAAGGGCAGAGGCTATGGCAGAAGTTGTAGCGATTGCGAGTTATTTTGGGGTTAAAAAGAAAAGAAAAAAAATTCTGTGACATTTAAAAATTTATTATAATTTCGTCGACTATAGGCTAAATGTTTATACAATGAAAATAAATTTGTGTTATGAGGATTAATTCAAAATAGATAAATTTAAATTGAATCATTTTATTTTAGTTGATTTGGGAAATTCCTAACTTAATGAGGGTAATTTTCTTTATTATTGAATATGTTGATAATAATAGGTGTATATTTGATTTTCTAAAATTTTCACCATTTCGTAATTTAATCATAAAAATTAGAAAATATCTGACGGAGATTAAAAGGTCTTTGTAAGCTAGCTTCAGCCATTCCTTTACATTTTGTCCTCACAATGAAGAAAATAGTATGATTTGATCACTTGCAGATTAAAAATAGTAGAAGAAAATGACTACAAATGACAATTGATTTTGATACTCTAAGTCGATAACAAAGTTATCTCAAAATTATAGTCTTGAAATTTATTTATTTTACTTTTTAGATGAGATCAAATAACATTAAATTTGAGGTATAATTTTTTCTTAAATTTAGTTATCTCTTTAATTAAATAAAGCACTATAAATTTAATTTTAAATATAATAGTGAGATATCTTTATCTTATGAACCAAATATTTGAAAATATTAGCACAGGTGCCAACATTTTACTAGTAATGACATTGAATATCTCCTTTCAGTCTTCACATCGTTTAAATACTATACAAAATTATAGTATCAAATTAAATTAATATGATTTTTTTTTTTGGATTATGAATTCGCAATTTGAGTCTCTTAAATTGTATATTTTTCTTCATGATAACTTCACAAATTATGACTACTATCAAAAGTTTCAGTTTTTATACAATCCTACCAGATTTCTTAGTTAATATTATCAATTTATTATTTCCAATGTATTTACGTAAATTTCCCATAAGAAAAAAGTTCCAATCATTATAAAAGCAACTAATCTTTTGCATTGCATTATAATAACAGGAGGGGAAGATGTTTATGAATTGTTTTTTGGGAAAACTACTTGATAAGACCACATTCATATCATATATACTAATTCTATCTGTACTTTCTGATAACTATACATATTTTACTTAGCGGAATTAGATATTTTAATGAGGGTTTAAAATCTGAGAAGTAAACATACGAACTAGTGGGAGGGGGTTCGACATCTATTGTATATATCTAAAAAATAATTTTAATCATGTATAAATAGTAATACTTTTTCACCGACTACATCCGCCCCTGATCTTACTATCAATTAAGAATTTTCTATCATATATTGAGAAACATACACCTAGTTACATATATTTTTGCTATCAGAAATATAAAAATAGAGAAAGGTGAACAAGATTGTCATGCATCTCAGATAAATATGAATCACACCAAATACATGTATATCAATTTAGTGTGATTCAAATATATCTAGGATACCAAATAAATAGAAAAGTAACGAGCGAAATTTGTTATATATTTCATATACATGCGAATCCAATTGTAATCCTCGATGAGTCTGAATTGGATATGCCTTGTTTTGTAACTCTTTGGAGAAATCACTTACATCTTAATAATATTACTCACGTCTTATGAACACTATACACTCTTTTGCTTTAATTTATGTGACATTTTTTTCTTTCTTGAGAGTCAAATCTAAGTTTGATCAAGAATTTGCATATGAAAATTTTAATTCTTTTGAATGAAATTTATATATATTTGTAAACTACGTAAAAAATATTAAAATAAATTACAATATTTAAAAATTTATTAAAAAATTTAAATAAAATAAATTTATTTAAATCTTTAAATTTAAATCACGTAAATTAAAGGAGTATCAAGGACCACGGGATCATGTGCATGTTGTCCTAAAGCTACTATTGGGCCAAGTCACAAATTTGTCTTACGTATTATCCTCGTATTATTATTGGGATATAGATGACAAGTGAGCTGACATTTCAGTGTAACAACCAGTCTAGGAGCGTCCACATTTTATACATGGCAAGTTAGCAACAATCAATGTGAAAATATCCACCTTAAATCACTTGTAGATTTTTTTTATTACTCCTTCTGATTTATAAAGAATCTTGACATGGAGTTTAAAAAGTATAAAAAGAGTTTTGAATCTTGTTATCCTAAATTAAAATTAAGTTAAATGTAAAAAATTGTTCTTTGATCTTCTCACCTTAAATATATCACGTAAAAAATTAAAATTAAAATATTACAATAAAAAAAAGAGATTAATTTTTCTATAACAGACTAAAAAAAGAAAGGAGACTATTTTTTTAAAACCAAAAAAATGTGTCTTTTCAAGAACATAAATATGACAGTTTTTAAATTTCTTTTGTTTGTTATTTGTGCATGATTTGACTCGTGTGGCTCTTATGCCTTGATAAAACCAATATTTGTCTAAGAATATCTTGTGTTTTGAGTTTTATTTCCTTCATTTAGTAATTGTTATTCTTTCCGTCTCTAATTACTTATTCATTTTAAATTGATTTGTTCCTATAAATCATAAAGTGAACTAATTAAAATTTTAAGATTTTTAAAAAATTCTGTCTTTTTCAATATAATAAATTGAGGGTTTAATAAGTAAATTCTTTTTTATTCTTTTTTTATTTGTCAAAATGAACAAGTAATTAGGAACAACTAAGAAAAAGAAAATGGACAAATAATTAGGGACAGAAGGACTATTATTCACTCTCTCCATTTCATTTTGATTGTTTGGTGAGTAACTTGTCCTTTTCGTGTTTTCCAATTGCATAAGATGCTTTAATCTATTGCATACGTTCAATCAACCGTTGTCTTGTATTAACTTGACATGAATTTAAGAAAGTAGAGAAGAGTTTTGAATATTGTGATCTTAAATTAAAGACATGTAGAATATACCAAAATGTTATTTAATTATGTGGCTTTCAACATGTTGTGTGTATACTTTGCCAAACATTTCCAAAAGCTATTAATAAGTTTGACCAACTTTAAAATCAATCCAAACAGACTCATTAAACAAAAAATATAAGCATTATGTATTGGTAGTTAAAACAATTTTGATACTCCTTTGTTTTGAATTTTATATAGGTCATGTAACCAGCATGAGTTGTAATACAGTTATGATGAGATTGCTTTACTCTTGATTAGAGGTTTTGAGGTTTCGAATTTTTAACTTTGAATATTGAAAAAATCCTGTTAGAAGCGCCACTCCAAATGGTCTACTTGTCATGTGTAATTCAAGCAGTAAAATCCACAGAATCAACCTAGATATGATGCATCAACATAGCTTATGTACATCTTCTTAGAATACGACTCTTTCCAGAACCCTGCATGATCACAAGTTTATTCATGCACTTAACTACCTTCTTGACTAGCAACTTGATTGCTTTCTTTTGTTTTAGAGAAAATGGAATAAGAAATTCTTATACATTGTGTATTGTTGATTTTGCAGATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAAATTCCTCTTTAACTTCTTCTCCCTCACTATCCTCGGCGCTGATCCATCTGTCTCCCCAGAAATCGCCAATTCTGGCTACATCTTTCTTGATTCATGGCTAGCTATTCAATTAGCACCTACTGTCAGCATTGGTGTCCTTCAACCTCTTGAAGAAATTTTAGTCCATTCTTTTGCATACCCTTTTTTTCTTGTCAAAGGTAATTATGAAAAACTCGTTCAATTCGTCAAAAATGAAGCCAAGGAAGTTTTAAGCAGGGCACAAACAG</genome_strand>
        <mrna_strand>AGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGCTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATCCTTCTGAACCTAAACATGCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGAATTTTACACTGGATCTTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTAATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTATTCTTCCTGCACTCCAAAAATTCCTCTTTAACTTCTTCTCCCTCACTATCCTCGGCGCTGATCCATCAGTCTCCCCGGAAATCGCCAATTCTGGCTACATCTTTCTTGATTCATGGCTAGCTATTCAATTAGCACCTACTGTCAGCATTGGTGTCCTTCAACCTCTTGAAGAAATTTTAGTCCATTCTTTTGCATACCCTTTTTTTCTTGTCAAAGGTAATTATGAAAAACTCGTTCAATTCGTCAAAAATGAAGCCAAGGAAGTTTTAAGCAGGGCACAAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342422" ref_strand="+" ref_description="SGN-E342422 [cTOF-8-O11]">
      <seq>ttctggctacatctttcttgattcatggctagctattcaattagcacctactgtcagcattggtgtccttcaacctcttgaagaaattttagtccattcttttgcataccctttttttcttgtcaaaggtaattatgaaaaactcgttcaattcgtcaaaaatgaagccaaggaagttttaagcagggcacaaacagagtttcaactcacagaacaagaagccattcataaccttttgttcattcttgggttcaatgcttttggtggcttctccattttcttgccaactcttttgggaaatcttggagatgagaaaaacgcggatatgcaagagaaactgagaaaagaagtgagagacaaagtcggcgtaaatccagaaaacttgagttttgaaagtgttaaagaaatggaacttgttcagtcttttgtttatgaaacacttaggcttagtccaccagtaccaagtcaatatgcaagagcaagaaaagattttaaactgagttcacatgattcagtttacgaaatcaagaaaggggagcttctttgtggttatcagcctttagttatgaaagatccaaagggtgtttgatgaacctgaaaagttttgtgttgggagagatttacaaaggaaaaagggaaagaattgctgaattatttgttttggtctaatggtccacaactgggagacctactgaataaacaaagcatgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="30090" stop="31401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30390" g_stop="31101" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E342422" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30390" e_stop="31101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGGCTACATCTTTCTTGATTCATGGCTAGCTATTCAATTAGCACCTACTGTCAGCATTGGTGTCCTTCAACCTCTTGAAGAAATTTTAGTCCATTCTTTTGCATACCCTTTTTTTCTTGTCAAAGGTAATTATGAAAAACTCGTTCAATTCGTCAAAAATGAAGCCAAGGAAGTTTTAAGCAGGGCACAAACAGAGTTTCAACTCACAGAACAAGAAGCCATTCATAACCTTTTGTTCATTCTTGGGTTCAATGCTTTTGGTGGCTTCTCCATTTTCTTGCCAACTCTTTTGGGAAATCTTGGAGATGAGAAAAACGCGGATATGCAAGAGAAACTGAGAAAAGAAGTGAGAGACAAAGTCGGCGTAAATCCAGAAAACTTGAGTTTTGAAAGTGTTAAAGAAATGGAACTTGTTCAGTCTTTTGTTTATGAAACACTTAGGCTTAGTCCACCAGTACCAAGTCAATATGCAAGAGCAAGAAAAGATTTTAAACTGAGTTCACATGATTCAGTTTACGAAATCAAGAAAGGGGAGCTTCTTTGTGGTTATCAGCCTTTAGTTATGAAAGATCCAAA-GGTGTTTGATGAACCTGAAAAG-TTTGTGTT-GGAGAGATTTACAAAGGAAAAAGGGAAAGAATTGCTGAATTATTTGTTTTGGTCTAATGGTCCACAAACTGGGAGACCTACTGAATCAAACAAGCAATGTGCT</genome_strand>
        <mrna_strand>TTCTGGCTACATCTTTCTTGATTCATGGCTAGCTATTCAATTAGCACCTACTGTCAGCATTGGTGTCCTTCAACCTCTTGAAGAAATTTTAGTCCATTCTTTTGCATACCCTTTTTTTCTTGTCAAAGGTAATTATGAAAAACTCGTTCAATTCGTCAAAAATGAAGCCAAGGAAGTTTTAAGCAGGGCACAAACAGAGTTTCAACTCACAGAACAAGAAGCCATTCATAACCTTTTGTTCATTCTTGGGTTCAATGCTTTTGGTGGCTTCTCCATTTTCTTGCCAACTCTTTTGGGAAATCTTGGAGATGAGAAAAACGCGGATATGCAAGAGAAACTGAGAAAAGAAGTGAGAGACAAAGTCGGCGTAAATCCAGAAAACTTGAGTTTTGAAAGTGTTAAAGAAATGGAACTTGTTCAGTCTTTTGTTTATGAAACACTTAGGCTTAGTCCACCAGTACCAAGTCAATATGCAAGAGCAAGAAAAGATTTTAAACTGAGTTCACATGATTCAGTTTACGAAATCAAGAAAGGGGAGCTTCTTTGTGGTTATCAGCCTTTAGTTATGAAAGATCCAAAGGGTGTTTGATGAACCTGAAAAGTTTTGTGTTGGGAGAGATTTACAAAGGAAAAAGGGAAAGAATTGCTGAATTATTTGTTTTGGTCTAATGGTCCAC-AACTGGGAGACCTACTGAAT-AAACAAAGCATGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252354" ref_strand="+" ref_description="SGN-E252354 [cLEG-12-G3]">
      <seq>ggctacatctttcttgattcatggctagctattcaattagcacctactgtcagcattggtgtccttcaacctcttgaagaaattttagtccattcttttgcataccctttttttcttgtcaaaggtaattatgaaaaactcgttcaattcgtcaaaaatgaagccaaggaagttttaagcagggcacaaacagagtttcaactcacagaacaagaagccattcataaccttttgttcattcttgggttcaatgcttttggtggcttctccattttcttgccaactcttttgggaaatcttggagatgagaaaaacgcggatatgcaagagaaactgagaaaagaagtgagagacaaagtcggcgtaaatccagaaaacttgagttttgaaagtgttaaagaaatggaacttgttcagtcttttgtttatgaaacacttaggcttagtccaccagttccaagtcaatatgcaagagcaagaaaagattttaaactgagttcacatgattcagtttacgaaatcaagaaaggggagcttctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="30094" stop="31235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30394" g_stop="30935" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E252354" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30394" e_stop="30935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTACATCTTTCTTGATTCATGGCTAGCTATTCAATTAGCACCTACTGTCAGCATTGGTGTCCTTCAACCTCTTGAAGAAATTTTAGTCCATTCTTTTGCATACCCTTTTTTTCTTGTCAAAGGTAATTATGAAAAACTCGTTCAATTCGTCAAAAATGAAGCCAAGGAAGTTTTAAGCAGGGCACAAACAGAGTTTCAACTCACAGAACAAGAAGCCATTCATAACCTTTTGTTCATTCTTGGGTTCAATGCTTTTGGTGGCTTCTCCATTTTCTTGCCAACTCTTTTGGGAAATCTTGGAGATGAGAAAAACGCGGATATGCAAGAGAAACTGAGAAAAGAAGTGAGAGACAAAGTCGGCGTAAATCCAGAAAACTTGAGTTTTGAAAGTGTTAAAGAAATGGAACTTGTTCAGTCTTTTGTTTATGAAACACTTAGGCTTAGTCCACCAGTACCAAGTCAATATGCAAGAGCAAGAAAAGATTTTAAACTGAGTTCACATGATTCAGTTTACGAAATCAAGAAAGGGGAGCTTCTTTG</genome_strand>
        <mrna_strand>GGCTACATCTTTCTTGATTCATGGCTAGCTATTCAATTAGCACCTACTGTCAGCATTGGTGTCCTTCAACCTCTTGAAGAAATTTTAGTCCATTCTTTTGCATACCCTTTTTTTCTTGTCAAAGGTAATTATGAAAAACTCGTTCAATTCGTCAAAAATGAAGCCAAGGAAGTTTTAAGCAGGGCACAAACAGAGTTTCAACTCACAGAACAAGAAGCCATTCATAACCTTTTGTTCATTCTTGGGTTCAATGCTTTTGGTGGCTTCTCCATTTTCTTGCCAACTCTTTTGGGAAATCTTGGAGATGAGAAAAACGCGGATATGCAAGAGAAACTGAGAAAAGAAGTGAGAGACAAAGTCGGCGTAAATCCAGAAAACTTGAGTTTTGAAAGTGTTAAAGAAATGGAACTTGTTCAGTCTTTTGTTTATGAAACACTTAGGCTTAGTCCACCAGTTCCAAGTCAATATGCAAGAGCAAGAAAAGATTTTAAACTGAGTTCACATGATTCAGTTTACGAAATCAAGAAAGGGGAGCTTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712982" ref_strand="+" ref_description="SGN-E712982 [FB06BE10]">
      <seq>gttttaagcagggcacaaacagagtttcaactcacagaacaacaagccattcataaccttttgttcattcttgggttcaatgcttttggtggcttctccattttcttgccaactcttttgggaaatcttggagatgagaaaaacgcggatatgcaagagaaactgagaaaagaagtgagagacaaagtcggcgtaaatccagaaaacttgagttttgaaagtgttaaagaaatggaacttgttcagtcttttgtttatgaaacacttaggcttagtccaccagtaccaagtcaatatgcaagagcaagaaaagattttaaactgagttcacatgattcagtttacgaaatcaagaaaggggagcttctttgtggttatcagcctttagctatgaaagatccaaaggtgtttgatgaacctgaaaagtttgtgttggagagatttacaaaggaaaaagggaaagaattgctgaattatttgttttggtctaatggtcccaccaactgggagacctactgaatcaaacaaccaatgtgcctgctaaacatatggatactctaactgcttctttgactgtggacttacattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="30265" stop="31452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30565" g_stop="31152" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E712982" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30565" e_stop="31152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTAAGCAGGGCACAAACAGAGTTTCAACTCACAGAACAAGAAGCCATTCATAACCTTTTGTTCATTCTTGGGTTCAATGCTTTTGGTGGCTTCTCCATTTTCTTGCCAACTCTTTTGGGAAATCTTGGAGATGAGAAAAACGCGGATATGCAAGAGAAACTGAGAAAAGAAGTGAGAGACAAAGTCGGCGTAAATCCAGAAAACTTGAGTTTTGAAAGTGTTAAAGAAATGGAACTTGTTCAGTCTTTTGTTTATGAAACACTTAGGCTTAGTCCACCAGTACCAAGTCAATATGCAAGAGCAAGAAAAGATTTTAAACTGAGTTCACATGATTCAGTTTACGAAATCAAGAAAGGGGAGCTTCTTTGTGGTTATCAGCCTTTAGTTATGAAAGATCCAAAGGTGTTTGATGAACCTGAAAAGTTTGTGTTGGAGAGATTTACAAAGGAAAAAGGGAAAGAATTGCTGAATTATTTGTTTTGGTCTAATGGT-CCACAAACTGGGAGACCTACTGAATCAAACAAGCAATGTG-CTGCTAAAGATATGGTTACTCTAACTGCTTCTTTGATTGTGG-CTTACATTTTC</genome_strand>
        <mrna_strand>GTTTTAAGCAGGGCACAAACAGAGTTTCAACTCACAGAACAACAAGCCATTCATAACCTTTTGTTCATTCTTGGGTTCAATGCTTTTGGTGGCTTCTCCATTTTCTTGCCAACTCTTTTGGGAAATCTTGGAGATGAGAAAAACGCGGATATGCAAGAGAAACTGAGAAAAGAAGTGAGAGACAAAGTCGGCGTAAATCCAGAAAACTTGAGTTTTGAAAGTGTTAAAGAAATGGAACTTGTTCAGTCTTTTGTTTATGAAACACTTAGGCTTAGTCCACCAGTACCAAGTCAATATGCAAGAGCAAGAAAAGATTTTAAACTGAGTTCACATGATTCAGTTTACGAAATCAAGAAAGGGGAGCTTCTTTGTGGTTATCAGCCTTTAGCTATGAAAGATCCAAAGGTGTTTGATGAACCTGAAAAGTTTGTGTTGGAGAGATTTACAAAGGAAAAAGGGAAAGAATTGCTGAATTATTTGTTTTGGTCTAATGGTCCCACCAACTGGGAGACCTACTGAATCAAACAACCAATGTGCCTGCTAAACATATGGATACTCTAACTGCTTCTTTGACTGTGGACTTACATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254885" ref_strand="+" ref_description="SGN-E254885 [cLEG-33-N8]">
      <seq>tgccaactcttttgggaaatcttggagatgagaaaaacgcggatatgcaagagaaactgagaaaagaagtgagagacaaagtcggcgtaaatccagaaaacttgagttttgaaagtgttaaagaaatggaacttgttcagtcttttgtttatgaaacacttaggcttagtccaccagtaccaagtcaatatgcaagagcaagaaaagattttaaactgagttcacatgattcagtttacgaaatcaagaaaggggagcttctttgtggttatcagcctttagttatgaaagatccaaaggtgtttgatgaacctgaaaagtttgtgttggagagatttacaaaggaaaaagggaaagaattgctgaattatttgnnttttgggtctaatggtccacaaactgggagacctactgaatcaaacaagcaatgtgctgctaaagatatggttactctaactgcttctttgattgtggcttacattttccaaaagtacgattctgtgagtttctcatctggttcactcacatctgtgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="30371" stop="31504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30671" g_stop="31204" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E254885" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30671" e_stop="31204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCAACTCTTTTGGGAAATCTTGGAGATGAGAAAAACGCGGATATGCAAGAGAAACTGAGAAAAGAAGTGAGAGACAAAGTCGGCGTAAATCCAGAAAACTTGAGTTTTGAAAGTGTTAAAGAAATGGAACTTGTTCAGTCTTTTGTTTATGAAACACTTAGGCTTAGTCCACCAGTACCAAGTCAATATGCAAGAGCAAGAAAAGATTTTAAACTGAGTTCACATGATTCAGTTTACGAAATCAAGAAAGGGGAGCTTCTTTGTGGTTATCAGCCTTTAGTTATGAAAGATCCAAAGGTGTTTGATGAACCTGAAAAGTTTGTGTTGGAGAGATTTACAAAGGAAAAAGGGAAAGAATTGCTGAATTATTTG--TTTT-GGTCTAATGGTCCACAAACTGGGAGACCTACTGAATCAAACAAGCAATGTGCTGCTAAAGATATGGTTACTCTAACTGCTTCTTTGATTGTGGCTTACATTTTCCAAAAGTACGATTCTGTGAGTTTCTCATCTGGTTCACTCACATCTGTGAAAA</genome_strand>
        <mrna_strand>TGCCAACTCTTTTGGGAAATCTTGGAGATGAGAAAAACGCGGATATGCAAGAGAAACTGAGAAAAGAAGTGAGAGACAAAGTCGGCGTAAATCCAGAAAACTTGAGTTTTGAAAGTGTTAAAGAAATGGAACTTGTTCAGTCTTTTGTTTATGAAACACTTAGGCTTAGTCCACCAGTACCAAGTCAATATGCAAGAGCAAGAAAAGATTTTAAACTGAGTTCACATGATTCAGTTTACGAAATCAAGAAAGGGGAGCTTCTTTGTGGTTATCAGCCTTTAGTTATGAAAGATCCAAAGGTGTTTGATGAACCTGAAAAGTTTGTGTTGGAGAGATTTACAAAGGAAAAAGGGAAAGAATTGCTGAATTATTTGNNTTTTGGGTCTAATGGTCCACAAACTGGGAGACCTACTGAATCAAACAAGCAATGTGCTGCTAAAGATATGGTTACTCTAACTGCTTCTTTGATTGTGGCTTACATTTTCCAAAAGTACGATTCTGTGAGTTTCTCATCTGGTTCACTCACATCTGTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261695" ref_strand="+" ref_description="SGN-E261695 [cLEG-61-O20]">
      <seq>tttgaaagtgttaaagaaatggaacttgttcagtcttttgtttatgaaacacttaggcttagtccaccagtaccaagtcaatatgcaagagcaagaaaagattttaaactgagttcacatgattcagtttacgaaatcaagaaaggggagcttctttgtggttatcagcctttagttatgaaagatccaaaggtgtttgatgaacctgaaaagtttgtgttggagagatttacaaaggaaaaagggaaagaattgctgaattatttgttttggtctaatggtccacaaactgggagacctactgaatcaaacaagcaatgtgctgctaaagatatggttactctaactgcttctttgattgtggcttacattttccaaaagtacgattctgtgagtttctcatctggttcactcacatctgtgaaaaaggctagttgagttctgggctgtgtagctgcaaaatctaagcttgctagacatgttgatcttaagtctcggtggctggcttttccttcctccccctattgtgtaatataatttcacaaataaaagttcaacatgagtgtacttattttctgttctgacttatgactattgtctatcctcttacaaattaagttggaacatgaatctaagttataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="30478" stop="31721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30778" g_stop="31421" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E261695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30778" e_stop="31421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAAGTGTTAAAGAAATGGAACTTGTTCAGTCTTTTGTTTATGAAACACTTAGGCTTAGTCCACCAGTACCAAGTCAATATGCAAGAGCAAGAAAAGATTTTAAACTGAGTTCACATGATTCAGTTTACGAAATCAAGAAAGGGGAGCTTCTTTGTGGTTATCAGCCTTTAGTTATGAAAGATCCAAAGGTGTTTGATGAACCTGAAAAGTTTGTGTTGGAGAGATTTACAAAGGAAAAAGGGAAAGAATTGCTGAATTATTTGTTTTGGTCTAATGGTCCACAAACTGGGAGACCTACTGAATCAAACAAGCAATGTGCTGCTAAAGATATGGTTACTCTAACTGCTTCTTTGATTGTGGCTTACATTTTCCAAAAGTACGATTCTGTGAGTTTCTCATCTGGTTCACTCACATCTGTGAAAAAGGCTAGTTGAGTTCTGGGCTGTGTAGCTGCAAAATCTAAGCTTGCTAGACATGTTGATCTTAAGTCTCGGTGGCTGGCTTTTCCTTCCTCCCCCTATTGTGTAATATAATTTCACAAATAAAAGTTCAACATGAGTGTACTTATTTTCTGTTCTGACTTATGACTATTGTCTATCCTCTTACAAATTAAGTTGGAACATGAATCTAAGTTATAATT</genome_strand>
        <mrna_strand>TTTGAAAGTGTTAAAGAAATGGAACTTGTTCAGTCTTTTGTTTATGAAACACTTAGGCTTAGTCCACCAGTACCAAGTCAATATGCAAGAGCAAGAAAAGATTTTAAACTGAGTTCACATGATTCAGTTTACGAAATCAAGAAAGGGGAGCTTCTTTGTGGTTATCAGCCTTTAGTTATGAAAGATCCAAAGGTGTTTGATGAACCTGAAAAGTTTGTGTTGGAGAGATTTACAAAGGAAAAAGGGAAAGAATTGCTGAATTATTTGTTTTGGTCTAATGGTCCACAAACTGGGAGACCTACTGAATCAAACAAGCAATGTGCTGCTAAAGATATGGTTACTCTAACTGCTTCTTTGATTGTGGCTTACATTTTCCAAAAGTACGATTCTGTGAGTTTCTCATCTGGTTCACTCACATCTGTGAAAAAGGCTAGTTGAGTTCTGGGCTGTGTAGCTGCAAAATCTAAGCTTGCTAGACATGTTGATCTTAAGTCTCGGTGGCTGGCTTTTCCTTCCTCCCCCTATTGTGTAATATAATTTCACAAATAAAAGTTCAACATGAGTGTACTTATTTTCTGTTCTGACTTATGACTATTGTCTATCCTCTTACAAATTAAGTTGGAACATGAATCTAAGTTATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226079" ref_strand="+" ref_description="SGN-E226079 [cLEL-31-O9](-)">
      <seq>aaagtttgtgttggagagatttacaaaggaaaaagggaaagaattgctgaattatttgttttggtctaatggtccacaaactgggagacctactgaatcaaacaagcaatgtgctgctaaagatatggttactctaactgcttctttgattgtggcttacattttccaaaagtacgattctgtgagtttctcatctggttcactcacatctgtgaaaaaggctagttgagttctgggctgtgtagctgcaaaatctaagcttgctagacatgttgatcttaagtctcggtggctggcttttccttcctccccctattgtgtaatataatttcacaaataaaagttcaacatgagtgtacttattttctgttctgcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="30687" stop="31660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30987" g_stop="31360" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="376" polyA_stop="394"/>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E226079" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30987" e_stop="31360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTGTGTTGGAGAGATTTACAAAGGAAAAAGGGAAAGAATTGCTGAATTATTTGTTTTGGTCTAATGGTCCACAAACTGGGAGACCTACTGAATCAAACAAGCAATGTGCTGCTAAAGATATGGTTACTCTAACTGCTTCTTTGATTGTGGCTTACATTTTCCAAAAGTACGATTCTGTGAGTTTCTCATCTGGTTCACTCACATCTGTGAAAAAGGCTAGTTGAGTTCTGGGCTGTGTAGCTGCAAAATCTAAGCTTGCTAGACATGTTGATCTTAAGTCTCGGTGGCTGGCTTTTCCTTCCTCCCCCTATTGTGTAATATAATTTCACAAATAAAAGTTCAACATGAGTGTACTTATTTTCTGTTCTG</genome_strand>
        <mrna_strand>AAAGTTTGTGTTGGAGAGATTTACAAAGGAAAAAGGGAAAGAATTGCTGAATTATTTGTTTTGGTCTAATGGTCCACAAACTGGGAGACCTACTGAATCAAACAAGCAATGTGCTGCTAAAGATATGGTTACTCTAACTGCTTCTTTGATTGTGGCTTACATTTTCCAAAAGTACGATTCTGTGAGTTTCTCATCTGGTTCACTCACATCTGTGAAAAAGGCTAGTTGAGTTCTGGGCTGTGTAGCTGCAAAATCTAAGCTTGCTAGACATGTTGATCTTAAGTCTCGGTGGCTGGCTTTTCCTTCCTCCCCCTATTGTGTAATATAATTTCACAAATAAAAGTTCAACATGAGTGTACTTATTTTCTGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224102" ref_strand="+" ref_description="SGN-E224102 [cLEL-19-I8](-)">
      <seq>tttgtgttggagagatttacaaaggaaaaagggaaagaattgctgaattatttgttttggtctaatggtccacaaactgggagacctactgaatcaaacaagcaatgtgctgctaaagatatggttactctaactgcttctttgattgtggcttacattttccaaaagtacgattctgtgagtttctcatctggttcactcacatctgtgaaaaaggctagttgagttctgggctgtgtagctgcaaaatctaagcttgctagacatgttgatcttaagtctcggtggctggcttttccttcctccccctattgtgtaatataatttcacaaataaaagttcaacatgagtgtacttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="30691" stop="31648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30991" g_stop="31347" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="358" polyA_stop="374"/>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E224102" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30991" e_stop="31347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGTTGGAGAGATTTACAAAGGAAAAAGGGAAAGAATTGCTGAATTATTTGTTTTGGTCTAATGGTCCACAAACTGGGAGACCTACTGAATCAAACAAGCAATGTGCTGCTAAAGATATGGTTACTCTAACTGCTTCTTTGATTGTGGCTTACATTTTCCAAAAGTACGATTCTGTGAGTTTCTCATCTGGTTCACTCACATCTGTGAAAAAGGCTAGTTGAGTTCTGGGCTGTGTAGCTGCAAAATCTAAGCTTGCTAGACATGTTGATCTTAAGTCTCGGTGGCTGGCTTTTCCTTCCTCCCCCTATTGTGTAATATAATTTCACAAATAAAAGTTCAACATGAGTGTACTT</genome_strand>
        <mrna_strand>TTTGTGTTGGAGAGATTTACAAAGGAAAAAGGGAAAGAATTGCTGAATTATTTGTTTTGGTCTAATGGTCCACAAACTGGGAGACCTACTGAATCAAACAAGCAATGTGCTGCTAAAGATATGGTTACTCTAACTGCTTCTTTGATTGTGGCTTACATTTTCCAAAAGTACGATTCTGTGAGTTTCTCATCTGGTTCACTCACATCTGTGAAAAAGGCTAGTTGAGTTCTGGGCTGTGTAGCTGCAAAATCTAAGCTTGCTAGACATGTTGATCTTAAGTCTCGGTGGCTGGCTTTTCCTTCCTCCCCCTATTGTGTAATATAATTTCACAAATAAAAGTTCAACATGAGTGTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215652" ref_strand="+" ref_description="SGN-E215652 [cLEL-15-M8](-)">
      <seq>aaaagaaaaaagggaaagaattgctgaattatttgttttggtctaatggtccacaaactgggaggccttctgaatcaaacaagcaatgtgctgctaaagatatggttactctaactgcttctttgattgtggcttacattttccaaaagtacgattctgtgagtttctcatctggttcactcacatctgtgaaaaaggctagttgagttctgggctgtgtagctgcaaaatctaagcttgctagacatgttgatcttaagtctcggtggctggcttttccttcctccccctattgtgtaatataatttcccaaataaaagttcaacatgagtgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="30711" stop="31644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31010" g_stop="31341" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="335" polyA_stop="364"/>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E215652" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31010" e_stop="31341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGAAAAAGGGAAAGAATTGCTGAATTATTTGTTTTGGTCTAATGGTCCACAAACTGGGAGACCTACTGAATCAAACAAGCAATGTGCTGCTAAAGATATGGTTACTCTAACTGCTTCTTTGATTGTGGCTTACATTTTCCAAAAGTACGATTCTGTGAGTTTCTCATCTGGTTCACTCACATCTGTGAAAAAGGCTAGTTGAGTTCTGGGCTGTGTAGCTGCAAAATCTAAGCTTGCTAGACATGTTGATCTTAAGTCTCGGTGGCTGGCTTTTCCTTCCTCCCCCTATTGTGTAATATAATTTCACAAATAAAAGTTCAACATGAGT</genome_strand>
        <mrna_strand>AAAAGAAAAAAGGGAAAGAATTGCTGAATTATTTGTTTTGGTCTAATGGTCCACAAACTGGGAGGCCTTCTGAATCAAACAAGCAATGTGCTGCTAAAGATATGGTTACTCTAACTGCTTCTTTGATTGTGGCTTACATTTTCCAAAAGTACGATTCTGTGAGTTTCTCATCTGGTTCACTCACATCTGTGAAAAAGGCTAGTTGAGTTCTGGGCTGTGTAGCTGCAAAATCTAAGCTTGCTAGACATGTTGATCTTAAGTCTCGGTGGCTGGCTTTTCCTTCCTCCCCCTATTGTGTAATATAATTTCCCAAATAAAAGTTCAACATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226175" ref_strand="+" ref_description="SGN-E226175 [cLEL-31-O9](-)">
      <seq>actgaatcaaacaagcaatgtgctgctaaagatatggttactctaactgcttctttgattgtggcttacattttccaaaagtacgattctgtgagtttctcatctggttcactcacatctgtgaaaaaggctagttgagttctgggctgtgtagctgcaaaatctaagcttgctagacatgttgatcttaagtctcggtggctggcttttccttcctccccctattgtgtaatataatttcacaaataaaagttcaacatgagtgtacttattttctgttctgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="30778" stop="31661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31078" g_stop="31361" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="285" polyA_stop="303"/>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E226175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31078" e_stop="31361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAATCAAACAAGCAATGTGCTGCTAAAGATATGGTTACTCTAACTGCTTCTTTGATTGTGGCTTACATTTTCCAAAAGTACGATTCTGTGAGTTTCTCATCTGGTTCACTCACATCTGTGAAAAAGGCTAGTTGAGTTCTGGGCTGTGTAGCTGCAAAATCTAAGCTTGCTAGACATGTTGATCTTAAGTCTCGGTGGCTGGCTTTTCCTTCCTCCCCCTATTGTGTAATATAATTTCACAAATAAAAGTTCAACATGAGTGTACTTATTTTCTGTTCTGA</genome_strand>
        <mrna_strand>ACTGAATCAAACAAGCAATGTGCTGCTAAAGATATGGTTACTCTAACTGCTTCTTTGATTGTGGCTTACATTTTCCAAAAGTACGATTCTGTGAGTTTCTCATCTGGTTCACTCACATCTGTGAAAAAGGCTAGTTGAGTTCTGGGCTGTGTAGCTGCAAAATCTAAGCTTGCTAGACATGTTGATCTTAAGTCTCGGTGGCTGGCTTTTCCTTCCTCCCCCTATTGTGTAATATAATTTCACAAATAAAAGTTCAACATGAGTGTACTTATTTTCTGTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340943" ref_strand="+" ref_description="SGN-E340943 [cTOF-5-G16]">
      <seq>tccataactagaataagaggcatctgagagattgttggttagatccataccacaatgggattcctggtgacaactctaatttttgttgcaattggtgttattgcatctctctgcgccagaatctgctgcaatagagggccttctactaatctgttacacctaacattgattatcacggcgacagtgtgctgttggatgatgtgggcgattgtatatcttgcacagctgaaaccactcatcgttccagttttgagtgaaggggagtgagtgcattgtacgtcaaattttgtgttgatagttactggagattgctggaccctaagtattcttctctcaggctctgtaaacttttcatctgctgcgaataacttgataatttaatttgtatattgttcacctcttataaaatggttctttatgaaccaccattataatatccgcagtcaattctgggctgaaggtgaggactgtatgtattttggattggactctgagttggatcaaggatgataaataatcaaatggctgtatgttcttgcattgtttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="40274" stop="34993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40102" g_stop="40094" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40093" i_stop="39975" i_length="119">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39974" g_stop="39832" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="152" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39831" i_stop="39438" i_length="394">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39437" g_stop="39390" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="200" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39389" i_stop="35642" i_length="3748">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35641" g_stop="35294" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="548" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="549" polyA_stop="558"/>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E340943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40102" e_stop="40094"/>
          <exon e_start="39974" e_stop="39832"/>
          <exon e_start="39437" e_stop="39390"/>
          <exon e_start="35641" e_stop="35294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATAACTGTACGTCTTCGTCTCTGTATATCTCCATTAGTTTTTGCAGTATACATCTAGTTCATATTATGTGCTTTCGTTCAATTTGATTCTTCCATTTTAAAGTCGAACATTTTTTTGTAATGCAGAGAATAAGAGGCATCTGAGAGATTGTTGGTTAGATCCATACCACAATGGGATTCCTGGTGACAACTCTAATTTTTGTTGCAATTGGTGTTATTGCATCTCTCTGCGCCAGAATCTGCTGCAATAGAGGGCCTTCTACTAATCTGTATGTTATTTTTTTGTTTCATATGGTCTAGATTTCTTTAGTATGACGATACTTACTTTTTTTCATGGATTAATTTACTTGGAACTACTCATAACAGACTTTTATATTTTGTTTCCCAAGTTTAGTTTTCTATGTGCATCTGTAATGTATCAGCTAATGCTGTTTGGTACTTTGGTTATTTCCATCTAGAACTGCTAACTCAAAGGTGAATTCTAAGTCTAGATTAATGATTTATTAATTGTATCTGGCAAAAAATAATTGGGATAGTAAAGTAGTTTTTCCTTCTTCATCAATGGCTTGAGATATTTGAGACTGAATCCTTTGTTAATAATGCTGTGGAAGTATTTAAACTTTTTCTCCCCCTTAATGTTGTTGGTTGTGTTTTATAATGCAGGTTACACCTAACATTGATTATCACGGCGACAGTGTGCTGTTGGATGATGTAAGTGTTATATATGGTTGAAATTTCTGTTATACTTGCGAGACAAGATTAGGAGTAGATTAAAGTATTGCACCATGAAATTCTTATACTTGAATATGTTTGGATGCCTTTAAGTAGAGTATGTAATTTCATATTTTGTCCTTTTGAAGTTTTGGTGGATAAGATAGACTCTTAGTTCGAGGCAACATGGGCAGAAAGAAAAGATTTGTCTGAACCACTGATCGGTCACTAATGCTAAAAGCTTTCCAAATCTAGCAATCAATTAAGCATGTCAAAGAAAATTTGTTTCTAACATTTGTTACCTTTGTCAAAAAAAAAAATTGTTTCTAACACAATGGAATATGTCTTATCCAATGGATCATAATATGAAGCATGGTTAACTGATTCTTTTCTAGAAGAATGAAGTTATCACTTTAGTCTTAGCTTTGGCTGAAGATGCACCTGAGTCTCTCATAATAGCAAGGCAATATTGTCAAAGGTGCACTTAAGGCATGGTGATTTCTACAGTTAGGCTTAATAAAAACTATTACTTTGGATTGCTTAGGTAGCGTTTTAAGGAAGATATAGGATGTTAGGAAATGCGGCTCAGAAAAAGTTAATCAACCAGCAGTTTGTAAAAAAATTAGGTGAATTTGGGTGGCTCTTGGCTCTACCTTGAAGAGGACAACACTTAAAAGATAAATATAATAGAAAAATGACGTCTTAATTGATAAAACAAAACATTGCAGATGAACACAAATATTATTAAGAAATACTGTTTTCTTAACTTAATAACTTTGATATTACCAATACTGTTTAAAATGAAGTTATTAATAAGGGATAAGAAATTAGAATTTTGTTTAAGAAATACTACAACAACAATAACAACTACAACTATACCTCAATCCCAAGCAAGTTGGGGTTGACTATATGAATCCTCATTGTCCATGTCGATCCATTGAAACTTATCTCAGTCCAGAAAAGTACATCTTTGCTTCTGCATTTAATTGACTTTGAACTCAATTATTGGTTGCGACTTAATATATTATGTCATAACAAAATTTTCAATTATCTATTTAAAAAATTGTTGTTTCATTATCATGGTTATTGTTTCTAGCTTTATATTTTTTTATTCATAATGATTTATGTGCATTTCTACACTAAAGCACATTTTTTTTTTAATTTTTTCATAGAAGCTCCAGCAGACCTGTAACATTTAGCAGTTAAAACTTAGTTAGTGTAACCTAAACATCAGCTTGTGTGAGAAAAAGCAAATGATATATACGAAGCGAACAATGTTCAACTTGAGCTAAGGCTCAGTTGGAAGAAAATAAATAGATATCTTGATTCCTTTTTCTTGATAAAGAAGAGGCCATGTTAAAATTGAGATTGAGATAGAGAATGCAATATTTCGAGAAGATTTAGGGGTGTTGTAACTTTTTTTTTGTTATAATAAGGGAAATACGCAGCCGTTACCCTTTGGGTGCGCACAAAGTAAAGCCCTTTACCCTGCTCTTATGCAATAGTTCACAAACCACACAGGGAGGTAACCCGCATTAGGCAAGCCCGGTGCGAAGAGCTCGACCCAAAAGGCTAACCCCTTGCTTTCGCTGGCAAGGGATTACGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCAATGCTGCGGAAAGGTTGAAAATATAGAAGACTCGAGAATTGACATAATTTTTTCATGTGTTTATTTACTTGTAAAATAATACTATGTGAAGCAGCGGAAAGGGAGCAATAAAACCTTACTCATGTTAGAAAATGATTCTCCTAGCAATAGTTTATGGAGAGTAGAGTCAGTAAACTAGGCGAGCTCATCTGCCTGTTACCTATTTGGCCACAAGGTTCTGAAGTGCAAGCATGCACCAAATTGAATTAACAATTTTATGAAATTACTCATTCAACTTCTATCACATGAAATACTCCACAAGTTTTCTGGTAGACTCATAAAGAAAAATATTGAAAGTTTACATTCAAATAGGAAAAGCTGGATCAGGTTTAACTGTAAACATAAAAAATCCTTCTGCCCTAGCCTATTTGACGAAATATGACTTTAATGGACAAATTTCTGATATGATCAGGATGCTTTAATAAATTTGTGAATTACTACCTCAGATGGGATATTTAACTTCTCTCTAAATACTCGAGGTTCAATTTCAAAGTTAGTCTTATCTTTAACTTACTGATAATTTTTACATAACCATATTGCAAAGAGAGTGACGTAGGTTTGATTTGCAGTTTTGTTCCAAAAAAGGAAAAGAAAGAAGTTTGATTAGCAGCTGTCCCAAGGGGATGGTTGAATGGTAGAGGTCAAGTGTTCAATGTCAGTTGGAACACTCCCTTGAGTCTATCTAGTTAGCCATGGTGACATGTTTACCCAACAATGTTCTTGTAGGTTGTAACAGGTTGCAAAAGTGAATTAGTCAAGTAGTCAAGGCTGGTGCAAATTGGAAACTTGAAAAACTGAAATTAACTTTTTTTAGTTTTCATGTGACCTAAAACCTGTAAAACACAATTTGAAGGTCAAACTCTCTTCCTTGATAGTTGTCTCAGGAAGGAAGAATGAAATGCAAATAATGTGATCCAAAAATATGGTTTTGACTTTTGTCTCACTTTCCCCACCTTTGCTTTTAAGTTGTTCAATATCTTTTAGGTTCGACTCTTCTGAATAACTTGAATCCAACTGTCTTCTTGCTTCGCTTCTATTATTTTTCTAATTGCTTCATCGAATCTAAGTTTGCGGCAGCAATCCTTTTGCAAAAGCACAGCTTCATCTTGTGAATCTTGCCAAAGGAATCTGAAGAATACCACTGTTGGCAAATATTAACACCTTCACTCTGATTGATTCACTTGTATTGGGAATTAAACACTGTCCACCTATCAATATGTTTTGTTAATATTTCCAAAGGAAACCCTCTCGAGTGGTTTTGTAATCGTCTAATTAGGGGCTTTCTATGTTAGCAGCCAGGCATATACTATGATAGTTTTCATTAATCCTGAAGACAGATTAGGAGTCATCATTCTTAAGGAGGCCACACTTTTTGTGTCATTTTACGTAGTCATTGATGGATCATGAAATGCTTTTTGTTGCTCTCCTAGTGAGTTGTATCTTAGTACACATAGCCTGAGGGGATCATAGAACTCGTGGTGACAAGAAAGTCTGTCTAAGAGATTTGATATCCAATTTCGATCAGGGGCTGTTATTACTGTCTGAACAGCTGAGAAATGAGTGAACATGAAGTGGTCTTGGAGTAATCCCAACTACAAATTTTTGGACTCCTAGTGCAGCATCCGGTTGGGCAACTGTCCTCCAAATTTGGTCAACTCCTTGATATAGAACTAGAAAGATATATGATATCTCTTTTTTGTATCGTGACAGACAGCTCTCGAATACTAAACATTGACAAGTACAGAGGTCTTTTCTTTAATTCTGCCCTTTTTAAAATGCCTCAACTAGGTATTCACAAACGTACAGCTTTATTATGCTGCCGACAGATATCTACATCTTTGAGCTTGATAATTTTCTGTCGAACTTATGACGGGACATCTGTTGTCCCTGTTAGGGCAGGAAGCAAATTTACTTGAAGGACTTGGTCCTAAATTTTTCCAATTACTGAGGTTTACCTACACAGGCACACAAACTTACCTGTCTTATTCATAAATTATAGCTTGAATGAAATCCATTTTTTGTTTTATCAAAACATATGAAACATTCCTTTGTTTTCTTAAATAGGTGGGCGATTGTATATCTTGCACAGCTGAAACCACTCATCGTTCCAGTTTTGAGTGAAGGGGAGTGAGTGCATTGTACGTCAAATTTTGTGTTGATAGTTACTGGAGATTGCTGGACCCTAAGTATTCTTCTCTCAGGCTCTGTAAACTTTTCATCTGCTGCGAATAACTTGATAATTTAATTTGTATATTGTTCACCTCTTATAAAATGGTTCTTTATGAACCACCATTATAATATCCGCAGTCAATTCTGGGCTGAAGGTGAGGACTGTATGTATTTTGGATTGGACTCTGAGTTGGATCAAGGATGATAAATAATCAAATGGCTGTATGTTCTTGCATTGTTTTT</genome_strand>
        <mrna_strand>TCCATAACT.......................................................................................................................AGAATAAGAGGCATCTGAGAGATTGTTGGTTAGATCCATACCACAATGGGATTCCTGGTGACAACTCTAATTTTTGTTGCAATTGGTGTTATTGCATCTCTCTGCGCCAGAATCTGCTGCAATAGAGGGCCTTCTACTAATCT..........................................................................................................................................................................................................................................................................................................................................................................................................GTTACACCTAACATTGATTATCACGGCGACAGTGTGCTGTTGGATGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCGATTGTATATCTTGCACAGCTGAAACCACTCATCGTTCCAGTTTTGAGTGAAGGGGAGTGAGTGCATTGTACGTCAAATTTTGTGTTGATAGTTACTGGAGATTGCTGGACCCTAAGTATTCTTCTCTCAGGCTCTGTAAACTTTTCATCTGCTGCGAATAACTTGATAATTTAATTTGTATATTGTTCACCTCTTATAAAATGGTTCTTTATGAACCACCATTATAATATCCGCAGTCAATTCTGGGCTGAAGGTGAGGACTGTATGTATTTTGGATTGGACTCTGAGTTGGATCAAGGATGATAAATAATCAAATGGCTGTATGTTCTTGCATTGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299483" ref_strand="+" ref_description="SGN-E299483 [cLET-43-H18]">
      <seq>aataataggcatctgagagattgttggttagatccataccacaatgggattcctggtgacaactctaatttttgttgcaattggtgttattgcatctctctgcgccagaatctgctgcaatagagggccttctactaatctgttacacctaacattgattatcacggcgacagtgtgctgttggatgatgtgggcgattgtatatcttgcacagctgaaaccactcatcgttccagttttgagtgaaggggagtgagtgcattgtacgtcaaattttgtgttgatagttactggagattgctggaccctaagtattcttctctcaggctctgtaaacttttcatctgctgcgaataacttgataatttaatttgtatattgttcacctcttataaaatggttctttatgaaccaccattataatatccgcagtcaattctgggctgaaggtgaagactgtatgtattttggataggactctgagttggatcaaggatgataaataatcaaatggctgtatgttcttgcattgttaaaaaaaaaaaaaaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="40272" stop="34997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39972" g_stop="39832" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39831" i_stop="39438" i_length="394">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39437" g_stop="39390" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="189" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39389" i_stop="35642" i_length="3748">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35641" g_stop="35300" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="531" r_length="342" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="554"/>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E299483" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39972" e_stop="39832"/>
          <exon e_start="39437" e_stop="39390"/>
          <exon e_start="35641" e_stop="35300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAGAGGCATCTGAGAGATTGTTGGTTAGATCCATACCACAATGGGATTCCTGGTGACAACTCTAATTTTTGTTGCAATTGGTGTTATTGCATCTCTCTGCGCCAGAATCTGCTGCAATAGAGGGCCTTCTACTAATCTGTATGTTATTTTTTTGTTTCATATGGTCTAGATTTCTTTAGTATGACGATACTTACTTTTTTTCATGGATTAATTTACTTGGAACTACTCATAACAGACTTTTATATTTTGTTTCCCAAGTTTAGTTTTCTATGTGCATCTGTAATGTATCAGCTAATGCTGTTTGGTACTTTGGTTATTTCCATCTAGAACTGCTAACTCAAAGGTGAATTCTAAGTCTAGATTAATGATTTATTAATTGTATCTGGCAAAAAATAATTGGGATAGTAAAGTAGTTTTTCCTTCTTCATCAATGGCTTGAGATATTTGAGACTGAATCCTTTGTTAATAATGCTGTGGAAGTATTTAAACTTTTTCTCCCCCTTAATGTTGTTGGTTGTGTTTTATAATGCAGGTTACACCTAACATTGATTATCACGGCGACAGTGTGCTGTTGGATGATGTAAGTGTTATATATGGTTGAAATTTCTGTTATACTTGCGAGACAAGATTAGGAGTAGATTAAAGTATTGCACCATGAAATTCTTATACTTGAATATGTTTGGATGCCTTTAAGTAGAGTATGTAATTTCATATTTTGTCCTTTTGAAGTTTTGGTGGATAAGATAGACTCTTAGTTCGAGGCAACATGGGCAGAAAGAAAAGATTTGTCTGAACCACTGATCGGTCACTAATGCTAAAAGCTTTCCAAATCTAGCAATCAATTAAGCATGTCAAAGAAAATTTGTTTCTAACATTTGTTACCTTTGTCAAAAAAAAAAATTGTTTCTAACACAATGGAATATGTCTTATCCAATGGATCATAATATGAAGCATGGTTAACTGATTCTTTTCTAGAAGAATGAAGTTATCACTTTAGTCTTAGCTTTGGCTGAAGATGCACCTGAGTCTCTCATAATAGCAAGGCAATATTGTCAAAGGTGCACTTAAGGCATGGTGATTTCTACAGTTAGGCTTAATAAAAACTATTACTTTGGATTGCTTAGGTAGCGTTTTAAGGAAGATATAGGATGTTAGGAAATGCGGCTCAGAAAAAGTTAATCAACCAGCAGTTTGTAAAAAAATTAGGTGAATTTGGGTGGCTCTTGGCTCTACCTTGAAGAGGACAACACTTAAAAGATAAATATAATAGAAAAATGACGTCTTAATTGATAAAACAAAACATTGCAGATGAACACAAATATTATTAAGAAATACTGTTTTCTTAACTTAATAACTTTGATATTACCAATACTGTTTAAAATGAAGTTATTAATAAGGGATAAGAAATTAGAATTTTGTTTAAGAAATACTACAACAACAATAACAACTACAACTATACCTCAATCCCAAGCAAGTTGGGGTTGACTATATGAATCCTCATTGTCCATGTCGATCCATTGAAACTTATCTCAGTCCAGAAAAGTACATCTTTGCTTCTGCATTTAATTGACTTTGAACTCAATTATTGGTTGCGACTTAATATATTATGTCATAACAAAATTTTCAATTATCTATTTAAAAAATTGTTGTTTCATTATCATGGTTATTGTTTCTAGCTTTATATTTTTTTATTCATAATGATTTATGTGCATTTCTACACTAAAGCACATTTTTTTTTTAATTTTTTCATAGAAGCTCCAGCAGACCTGTAACATTTAGCAGTTAAAACTTAGTTAGTGTAACCTAAACATCAGCTTGTGTGAGAAAAAGCAAATGATATATACGAAGCGAACAATGTTCAACTTGAGCTAAGGCTCAGTTGGAAGAAAATAAATAGATATCTTGATTCCTTTTTCTTGATAAAGAAGAGGCCATGTTAAAATTGAGATTGAGATAGAGAATGCAATATTTCGAGAAGATTTAGGGGTGTTGTAACTTTTTTTTTGTTATAATAAGGGAAATACGCAGCCGTTACCCTTTGGGTGCGCACAAAGTAAAGCCCTTTACCCTGCTCTTATGCAATAGTTCACAAACCACACAGGGAGGTAACCCGCATTAGGCAAGCCCGGTGCGAAGAGCTCGACCCAAAAGGCTAACCCCTTGCTTTCGCTGGCAAGGGATTACGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCAATGCTGCGGAAAGGTTGAAAATATAGAAGACTCGAGAATTGACATAATTTTTTCATGTGTTTATTTACTTGTAAAATAATACTATGTGAAGCAGCGGAAAGGGAGCAATAAAACCTTACTCATGTTAGAAAATGATTCTCCTAGCAATAGTTTATGGAGAGTAGAGTCAGTAAACTAGGCGAGCTCATCTGCCTGTTACCTATTTGGCCACAAGGTTCTGAAGTGCAAGCATGCACCAAATTGAATTAACAATTTTATGAAATTACTCATTCAACTTCTATCACATGAAATACTCCACAAGTTTTCTGGTAGACTCATAAAGAAAAATATTGAAAGTTTACATTCAAATAGGAAAAGCTGGATCAGGTTTAACTGTAAACATAAAAAATCCTTCTGCCCTAGCCTATTTGACGAAATATGACTTTAATGGACAAATTTCTGATATGATCAGGATGCTTTAATAAATTTGTGAATTACTACCTCAGATGGGATATTTAACTTCTCTCTAAATACTCGAGGTTCAATTTCAAAGTTAGTCTTATCTTTAACTTACTGATAATTTTTACATAACCATATTGCAAAGAGAGTGACGTAGGTTTGATTTGCAGTTTTGTTCCAAAAAAGGAAAAGAAAGAAGTTTGATTAGCAGCTGTCCCAAGGGGATGGTTGAATGGTAGAGGTCAAGTGTTCAATGTCAGTTGGAACACTCCCTTGAGTCTATCTAGTTAGCCATGGTGACATGTTTACCCAACAATGTTCTTGTAGGTTGTAACAGGTTGCAAAAGTGAATTAGTCAAGTAGTCAAGGCTGGTGCAAATTGGAAACTTGAAAAACTGAAATTAACTTTTTTTAGTTTTCATGTGACCTAAAACCTGTAAAACACAATTTGAAGGTCAAACTCTCTTCCTTGATAGTTGTCTCAGGAAGGAAGAATGAAATGCAAATAATGTGATCCAAAAATATGGTTTTGACTTTTGTCTCACTTTCCCCACCTTTGCTTTTAAGTTGTTCAATATCTTTTAGGTTCGACTCTTCTGAATAACTTGAATCCAACTGTCTTCTTGCTTCGCTTCTATTATTTTTCTAATTGCTTCATCGAATCTAAGTTTGCGGCAGCAATCCTTTTGCAAAAGCACAGCTTCATCTTGTGAATCTTGCCAAAGGAATCTGAAGAATACCACTGTTGGCAAATATTAACACCTTCACTCTGATTGATTCACTTGTATTGGGAATTAAACACTGTCCACCTATCAATATGTTTTGTTAATATTTCCAAAGGAAACCCTCTCGAGTGGTTTTGTAATCGTCTAATTAGGGGCTTTCTATGTTAGCAGCCAGGCATATACTATGATAGTTTTCATTAATCCTGAAGACAGATTAGGAGTCATCATTCTTAAGGAGGCCACACTTTTTGTGTCATTTTACGTAGTCATTGATGGATCATGAAATGCTTTTTGTTGCTCTCCTAGTGAGTTGTATCTTAGTACACATAGCCTGAGGGGATCATAGAACTCGTGGTGACAAGAAAGTCTGTCTAAGAGATTTGATATCCAATTTCGATCAGGGGCTGTTATTACTGTCTGAACAGCTGAGAAATGAGTGAACATGAAGTGGTCTTGGAGTAATCCCAACTACAAATTTTTGGACTCCTAGTGCAGCATCCGGTTGGGCAACTGTCCTCCAAATTTGGTCAACTCCTTGATATAGAACTAGAAAGATATATGATATCTCTTTTTTGTATCGTGACAGACAGCTCTCGAATACTAAACATTGACAAGTACAGAGGTCTTTTCTTTAATTCTGCCCTTTTTAAAATGCCTCAACTAGGTATTCACAAACGTACAGCTTTATTATGCTGCCGACAGATATCTACATCTTTGAGCTTGATAATTTTCTGTCGAACTTATGACGGGACATCTGTTGTCCCTGTTAGGGCAGGAAGCAAATTTACTTGAAGGACTTGGTCCTAAATTTTTCCAATTACTGAGGTTTACCTACACAGGCACACAAACTTACCTGTCTTATTCATAAATTATAGCTTGAATGAAATCCATTTTTTGTTTTATCAAAACATATGAAACATTCCTTTGTTTTCTTAAATAGGTGGGCGATTGTATATCTTGCACAGCTGAAACCACTCATCGTTCCAGTTTTGAGTGAAGGGGAGTGAGTGCATTGTACGTCAAATTTTGTGTTGATAGTTACTGGAGATTGCTGGACCCTAAGTATTCTTCTCTCAGGCTCTGTAAACTTTTCATCTGCTGCGAATAACTTGATAATTTAATTTGTATATTGTTCACCTCTTATAAAATGGTTCTTTATGAACCACCATTATAATATCCGCAGTCAATTCTGGGCTGAAGGTGAGGACTGTATGTATTTTGGATTGGACTCTGAGTTGGATCAAGGATGATAAATAATCAAATGGCTGTATGTTCTTGCATT</genome_strand>
        <mrna_strand>AATAATAGGCATCTGAGAGATTGTTGGTTAGATCCATACCACAATGGGATTCCTGGTGACAACTCTAATTTTTGTTGCAATTGGTGTTATTGCATCTCTCTGCGCCAGAATCTGCTGCAATAGAGGGCCTTCTACTAATCT..........................................................................................................................................................................................................................................................................................................................................................................................................GTTACACCTAACATTGATTATCACGGCGACAGTGTGCTGTTGGATGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCGATTGTATATCTTGCACAGCTGAAACCACTCATCGTTCCAGTTTTGAGTGAAGGGGAGTGAGTGCATTGTACGTCAAATTTTGTGTTGATAGTTACTGGAGATTGCTGGACCCTAAGTATTCTTCTCTCAGGCTCTGTAAACTTTTCATCTGCTGCGAATAACTTGATAATTTAATTTGTATATTGTTCACCTCTTATAAAATGGTTCTTTATGAACCACCATTATAATATCCGCAGTCAATTCTGGGCTGAAGGTGAAGACTGTATGTATTTTGGATAGGACTCTGAGTTGGATCAAGGATGATAAATAATCAAATGGCTGTATGTTCTTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320751" ref_strand="+" ref_description="SGN-E320751 [cTOB-27-L22]">
      <seq>aataagaggcatctgagagattgttggttagatccataccacaatgggattcctggtgacaactctaatttttgttgcaattggtgttattgcatctctctgcgccagaatctgctgcaatagagggccttctactaatctgttacacctaacattgattatcacggcgacagtgtgctgttggatgatgtgggcgattgtatatcttgcacagctgaaaccactcatcgttccagttttgagtgaaggggagtgagtgcattgtacgtcaaattttgtgttgatagttactggagattgctggaccctaagtattcttctctcaggctctgtaaacttttcatctgctgcgaataacttgataatttaatttgtatattgttcacctcttataaaatggttctttatgaaccaccattataatatccgcagtcaattctgggctgaaggtgaggactgtatgtattttggattggactctgagttggatcaaggatgataaataatcaaatggctgtatgttcttgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="40272" stop="35002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39972" g_stop="39832" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39831" i_stop="39438" i_length="394">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39437" g_stop="39390" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="189" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39389" i_stop="35642" i_length="3748">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35641" g_stop="35301" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="530" r_length="341" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E320751" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39972" e_stop="39832"/>
          <exon e_start="39437" e_stop="39390"/>
          <exon e_start="35641" e_stop="35301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAGAGGCATCTGAGAGATTGTTGGTTAGATCCATACCACAATGGGATTCCTGGTGACAACTCTAATTTTTGTTGCAATTGGTGTTATTGCATCTCTCTGCGCCAGAATCTGCTGCAATAGAGGGCCTTCTACTAATCTGTATGTTATTTTTTTGTTTCATATGGTCTAGATTTCTTTAGTATGACGATACTTACTTTTTTTCATGGATTAATTTACTTGGAACTACTCATAACAGACTTTTATATTTTGTTTCCCAAGTTTAGTTTTCTATGTGCATCTGTAATGTATCAGCTAATGCTGTTTGGTACTTTGGTTATTTCCATCTAGAACTGCTAACTCAAAGGTGAATTCTAAGTCTAGATTAATGATTTATTAATTGTATCTGGCAAAAAATAATTGGGATAGTAAAGTAGTTTTTCCTTCTTCATCAATGGCTTGAGATATTTGAGACTGAATCCTTTGTTAATAATGCTGTGGAAGTATTTAAACTTTTTCTCCCCCTTAATGTTGTTGGTTGTGTTTTATAATGCAGGTTACACCTAACATTGATTATCACGGCGACAGTGTGCTGTTGGATGATGTAAGTGTTATATATGGTTGAAATTTCTGTTATACTTGCGAGACAAGATTAGGAGTAGATTAAAGTATTGCACCATGAAATTCTTATACTTGAATATGTTTGGATGCCTTTAAGTAGAGTATGTAATTTCATATTTTGTCCTTTTGAAGTTTTGGTGGATAAGATAGACTCTTAGTTCGAGGCAACATGGGCAGAAAGAAAAGATTTGTCTGAACCACTGATCGGTCACTAATGCTAAAAGCTTTCCAAATCTAGCAATCAATTAAGCATGTCAAAGAAAATTTGTTTCTAACATTTGTTACCTTTGTCAAAAAAAAAAATTGTTTCTAACACAATGGAATATGTCTTATCCAATGGATCATAATATGAAGCATGGTTAACTGATTCTTTTCTAGAAGAATGAAGTTATCACTTTAGTCTTAGCTTTGGCTGAAGATGCACCTGAGTCTCTCATAATAGCAAGGCAATATTGTCAAAGGTGCACTTAAGGCATGGTGATTTCTACAGTTAGGCTTAATAAAAACTATTACTTTGGATTGCTTAGGTAGCGTTTTAAGGAAGATATAGGATGTTAGGAAATGCGGCTCAGAAAAAGTTAATCAACCAGCAGTTTGTAAAAAAATTAGGTGAATTTGGGTGGCTCTTGGCTCTACCTTGAAGAGGACAACACTTAAAAGATAAATATAATAGAAAAATGACGTCTTAATTGATAAAACAAAACATTGCAGATGAACACAAATATTATTAAGAAATACTGTTTTCTTAACTTAATAACTTTGATATTACCAATACTGTTTAAAATGAAGTTATTAATAAGGGATAAGAAATTAGAATTTTGTTTAAGAAATACTACAACAACAATAACAACTACAACTATACCTCAATCCCAAGCAAGTTGGGGTTGACTATATGAATCCTCATTGTCCATGTCGATCCATTGAAACTTATCTCAGTCCAGAAAAGTACATCTTTGCTTCTGCATTTAATTGACTTTGAACTCAATTATTGGTTGCGACTTAATATATTATGTCATAACAAAATTTTCAATTATCTATTTAAAAAATTGTTGTTTCATTATCATGGTTATTGTTTCTAGCTTTATATTTTTTTATTCATAATGATTTATGTGCATTTCTACACTAAAGCACATTTTTTTTTTAATTTTTTCATAGAAGCTCCAGCAGACCTGTAACATTTAGCAGTTAAAACTTAGTTAGTGTAACCTAAACATCAGCTTGTGTGAGAAAAAGCAAATGATATATACGAAGCGAACAATGTTCAACTTGAGCTAAGGCTCAGTTGGAAGAAAATAAATAGATATCTTGATTCCTTTTTCTTGATAAAGAAGAGGCCATGTTAAAATTGAGATTGAGATAGAGAATGCAATATTTCGAGAAGATTTAGGGGTGTTGTAACTTTTTTTTTGTTATAATAAGGGAAATACGCAGCCGTTACCCTTTGGGTGCGCACAAAGTAAAGCCCTTTACCCTGCTCTTATGCAATAGTTCACAAACCACACAGGGAGGTAACCCGCATTAGGCAAGCCCGGTGCGAAGAGCTCGACCCAAAAGGCTAACCCCTTGCTTTCGCTGGCAAGGGATTACGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCAATGCTGCGGAAAGGTTGAAAATATAGAAGACTCGAGAATTGACATAATTTTTTCATGTGTTTATTTACTTGTAAAATAATACTATGTGAAGCAGCGGAAAGGGAGCAATAAAACCTTACTCATGTTAGAAAATGATTCTCCTAGCAATAGTTTATGGAGAGTAGAGTCAGTAAACTAGGCGAGCTCATCTGCCTGTTACCTATTTGGCCACAAGGTTCTGAAGTGCAAGCATGCACCAAATTGAATTAACAATTTTATGAAATTACTCATTCAACTTCTATCACATGAAATACTCCACAAGTTTTCTGGTAGACTCATAAAGAAAAATATTGAAAGTTTACATTCAAATAGGAAAAGCTGGATCAGGTTTAACTGTAAACATAAAAAATCCTTCTGCCCTAGCCTATTTGACGAAATATGACTTTAATGGACAAATTTCTGATATGATCAGGATGCTTTAATAAATTTGTGAATTACTACCTCAGATGGGATATTTAACTTCTCTCTAAATACTCGAGGTTCAATTTCAAAGTTAGTCTTATCTTTAACTTACTGATAATTTTTACATAACCATATTGCAAAGAGAGTGACGTAGGTTTGATTTGCAGTTTTGTTCCAAAAAAGGAAAAGAAAGAAGTTTGATTAGCAGCTGTCCCAAGGGGATGGTTGAATGGTAGAGGTCAAGTGTTCAATGTCAGTTGGAACACTCCCTTGAGTCTATCTAGTTAGCCATGGTGACATGTTTACCCAACAATGTTCTTGTAGGTTGTAACAGGTTGCAAAAGTGAATTAGTCAAGTAGTCAAGGCTGGTGCAAATTGGAAACTTGAAAAACTGAAATTAACTTTTTTTAGTTTTCATGTGACCTAAAACCTGTAAAACACAATTTGAAGGTCAAACTCTCTTCCTTGATAGTTGTCTCAGGAAGGAAGAATGAAATGCAAATAATGTGATCCAAAAATATGGTTTTGACTTTTGTCTCACTTTCCCCACCTTTGCTTTTAAGTTGTTCAATATCTTTTAGGTTCGACTCTTCTGAATAACTTGAATCCAACTGTCTTCTTGCTTCGCTTCTATTATTTTTCTAATTGCTTCATCGAATCTAAGTTTGCGGCAGCAATCCTTTTGCAAAAGCACAGCTTCATCTTGTGAATCTTGCCAAAGGAATCTGAAGAATACCACTGTTGGCAAATATTAACACCTTCACTCTGATTGATTCACTTGTATTGGGAATTAAACACTGTCCACCTATCAATATGTTTTGTTAATATTTCCAAAGGAAACCCTCTCGAGTGGTTTTGTAATCGTCTAATTAGGGGCTTTCTATGTTAGCAGCCAGGCATATACTATGATAGTTTTCATTAATCCTGAAGACAGATTAGGAGTCATCATTCTTAAGGAGGCCACACTTTTTGTGTCATTTTACGTAGTCATTGATGGATCATGAAATGCTTTTTGTTGCTCTCCTAGTGAGTTGTATCTTAGTACACATAGCCTGAGGGGATCATAGAACTCGTGGTGACAAGAAAGTCTGTCTAAGAGATTTGATATCCAATTTCGATCAGGGGCTGTTATTACTGTCTGAACAGCTGAGAAATGAGTGAACATGAAGTGGTCTTGGAGTAATCCCAACTACAAATTTTTGGACTCCTAGTGCAGCATCCGGTTGGGCAACTGTCCTCCAAATTTGGTCAACTCCTTGATATAGAACTAGAAAGATATATGATATCTCTTTTTTGTATCGTGACAGACAGCTCTCGAATACTAAACATTGACAAGTACAGAGGTCTTTTCTTTAATTCTGCCCTTTTTAAAATGCCTCAACTAGGTATTCACAAACGTACAGCTTTATTATGCTGCCGACAGATATCTACATCTTTGAGCTTGATAATTTTCTGTCGAACTTATGACGGGACATCTGTTGTCCCTGTTAGGGCAGGAAGCAAATTTACTTGAAGGACTTGGTCCTAAATTTTTCCAATTACTGAGGTTTACCTACACAGGCACACAAACTTACCTGTCTTATTCATAAATTATAGCTTGAATGAAATCCATTTTTTGTTTTATCAAAACATATGAAACATTCCTTTGTTTTCTTAAATAGGTGGGCGATTGTATATCTTGCACAGCTGAAACCACTCATCGTTCCAGTTTTGAGTGAAGGGGAGTGAGTGCATTGTACGTCAAATTTTGTGTTGATAGTTACTGGAGATTGCTGGACCCTAAGTATTCTTCTCTCAGGCTCTGTAAACTTTTCATCTGCTGCGAATAACTTGATAATTTAATTTGTATATTGTTCACCTCTTATAAAATGGTTCTTTATGAACCACCATTATAATATCCGCAGTCAATTCTGGGCTGAAGGTGAGGACTGTATGTATTTTGGATTGGACTCTGAGTTGGATCAAGGATGATAAATAATCAAATGGCTGTATGTTCTTGCAT</genome_strand>
        <mrna_strand>AATAAGAGGCATCTGAGAGATTGTTGGTTAGATCCATACCACAATGGGATTCCTGGTGACAACTCTAATTTTTGTTGCAATTGGTGTTATTGCATCTCTCTGCGCCAGAATCTGCTGCAATAGAGGGCCTTCTACTAATCT..........................................................................................................................................................................................................................................................................................................................................................................................................GTTACACCTAACATTGATTATCACGGCGACAGTGTGCTGTTGGATGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCGATTGTATATCTTGCACAGCTGAAACCACTCATCGTTCCAGTTTTGAGTGAAGGGGAGTGAGTGCATTGTACGTCAAATTTTGTGTTGATAGTTACTGGAGATTGCTGGACCCTAAGTATTCTTCTCTCAGGCTCTGTAAACTTTTCATCTGCTGCGAATAACTTGATAATTTAATTTGTATATTGTTCACCTCTTATAAAATGGTTCTTTATGAACCACCATTATAATATCCGCAGTCAATTCTGGGCTGAAGGTGAGGACTGTATGTATTTTGGATTGGACTCTGAGTTGGATCAAGGATGATAAATAATCAAATGGCTGTATGTTCTTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320750" ref_strand="+" ref_description="SGN-E320750 [cTOB-27-L20]">
      <seq>aataagaggcatctgagagattgttggttagatccataccacaatgggattcctggtgacaactctaatttttgttgcaattggtgttattgcatctctctgcgccagaatctgctgcaatagagggccttctactaatctgttacacctaacattgattatcacggcgacagtgtgctgttggatgatgtgggcgattgtatatcttgcacagctgaaaccactcatcgttccagttttgagtgaaggggagtgagtgcattgtacgtcaaattttgtgttgatagttactggagattgctggaccctaagtattcttctctcaggctctgtaaacttttcatctgctgcgaataacttgataatttaatttgtatattgttcacctcttataaaatggttctttatgaaccaccattataatatccgcagtcaattctgggctgaaggtgaggactgtatgtattttggattggactctgagttggatcaaggatgataaataatcaaatggctgtatgttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="40272" stop="35004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39972" g_stop="39832" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39831" i_stop="39438" i_length="394">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39437" g_stop="39390" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="189" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39389" i_stop="35642" i_length="3748">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35641" g_stop="35304" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="527" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E320750" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39972" e_stop="39832"/>
          <exon e_start="39437" e_stop="39390"/>
          <exon e_start="35641" e_stop="35304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAGAGGCATCTGAGAGATTGTTGGTTAGATCCATACCACAATGGGATTCCTGGTGACAACTCTAATTTTTGTTGCAATTGGTGTTATTGCATCTCTCTGCGCCAGAATCTGCTGCAATAGAGGGCCTTCTACTAATCTGTATGTTATTTTTTTGTTTCATATGGTCTAGATTTCTTTAGTATGACGATACTTACTTTTTTTCATGGATTAATTTACTTGGAACTACTCATAACAGACTTTTATATTTTGTTTCCCAAGTTTAGTTTTCTATGTGCATCTGTAATGTATCAGCTAATGCTGTTTGGTACTTTGGTTATTTCCATCTAGAACTGCTAACTCAAAGGTGAATTCTAAGTCTAGATTAATGATTTATTAATTGTATCTGGCAAAAAATAATTGGGATAGTAAAGTAGTTTTTCCTTCTTCATCAATGGCTTGAGATATTTGAGACTGAATCCTTTGTTAATAATGCTGTGGAAGTATTTAAACTTTTTCTCCCCCTTAATGTTGTTGGTTGTGTTTTATAATGCAGGTTACACCTAACATTGATTATCACGGCGACAGTGTGCTGTTGGATGATGTAAGTGTTATATATGGTTGAAATTTCTGTTATACTTGCGAGACAAGATTAGGAGTAGATTAAAGTATTGCACCATGAAATTCTTATACTTGAATATGTTTGGATGCCTTTAAGTAGAGTATGTAATTTCATATTTTGTCCTTTTGAAGTTTTGGTGGATAAGATAGACTCTTAGTTCGAGGCAACATGGGCAGAAAGAAAAGATTTGTCTGAACCACTGATCGGTCACTAATGCTAAAAGCTTTCCAAATCTAGCAATCAATTAAGCATGTCAAAGAAAATTTGTTTCTAACATTTGTTACCTTTGTCAAAAAAAAAAATTGTTTCTAACACAATGGAATATGTCTTATCCAATGGATCATAATATGAAGCATGGTTAACTGATTCTTTTCTAGAAGAATGAAGTTATCACTTTAGTCTTAGCTTTGGCTGAAGATGCACCTGAGTCTCTCATAATAGCAAGGCAATATTGTCAAAGGTGCACTTAAGGCATGGTGATTTCTACAGTTAGGCTTAATAAAAACTATTACTTTGGATTGCTTAGGTAGCGTTTTAAGGAAGATATAGGATGTTAGGAAATGCGGCTCAGAAAAAGTTAATCAACCAGCAGTTTGTAAAAAAATTAGGTGAATTTGGGTGGCTCTTGGCTCTACCTTGAAGAGGACAACACTTAAAAGATAAATATAATAGAAAAATGACGTCTTAATTGATAAAACAAAACATTGCAGATGAACACAAATATTATTAAGAAATACTGTTTTCTTAACTTAATAACTTTGATATTACCAATACTGTTTAAAATGAAGTTATTAATAAGGGATAAGAAATTAGAATTTTGTTTAAGAAATACTACAACAACAATAACAACTACAACTATACCTCAATCCCAAGCAAGTTGGGGTTGACTATATGAATCCTCATTGTCCATGTCGATCCATTGAAACTTATCTCAGTCCAGAAAAGTACATCTTTGCTTCTGCATTTAATTGACTTTGAACTCAATTATTGGTTGCGACTTAATATATTATGTCATAACAAAATTTTCAATTATCTATTTAAAAAATTGTTGTTTCATTATCATGGTTATTGTTTCTAGCTTTATATTTTTTTATTCATAATGATTTATGTGCATTTCTACACTAAAGCACATTTTTTTTTTAATTTTTTCATAGAAGCTCCAGCAGACCTGTAACATTTAGCAGTTAAAACTTAGTTAGTGTAACCTAAACATCAGCTTGTGTGAGAAAAAGCAAATGATATATACGAAGCGAACAATGTTCAACTTGAGCTAAGGCTCAGTTGGAAGAAAATAAATAGATATCTTGATTCCTTTTTCTTGATAAAGAAGAGGCCATGTTAAAATTGAGATTGAGATAGAGAATGCAATATTTCGAGAAGATTTAGGGGTGTTGTAACTTTTTTTTTGTTATAATAAGGGAAATACGCAGCCGTTACCCTTTGGGTGCGCACAAAGTAAAGCCCTTTACCCTGCTCTTATGCAATAGTTCACAAACCACACAGGGAGGTAACCCGCATTAGGCAAGCCCGGTGCGAAGAGCTCGACCCAAAAGGCTAACCCCTTGCTTTCGCTGGCAAGGGATTACGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCAATGCTGCGGAAAGGTTGAAAATATAGAAGACTCGAGAATTGACATAATTTTTTCATGTGTTTATTTACTTGTAAAATAATACTATGTGAAGCAGCGGAAAGGGAGCAATAAAACCTTACTCATGTTAGAAAATGATTCTCCTAGCAATAGTTTATGGAGAGTAGAGTCAGTAAACTAGGCGAGCTCATCTGCCTGTTACCTATTTGGCCACAAGGTTCTGAAGTGCAAGCATGCACCAAATTGAATTAACAATTTTATGAAATTACTCATTCAACTTCTATCACATGAAATACTCCACAAGTTTTCTGGTAGACTCATAAAGAAAAATATTGAAAGTTTACATTCAAATAGGAAAAGCTGGATCAGGTTTAACTGTAAACATAAAAAATCCTTCTGCCCTAGCCTATTTGACGAAATATGACTTTAATGGACAAATTTCTGATATGATCAGGATGCTTTAATAAATTTGTGAATTACTACCTCAGATGGGATATTTAACTTCTCTCTAAATACTCGAGGTTCAATTTCAAAGTTAGTCTTATCTTTAACTTACTGATAATTTTTACATAACCATATTGCAAAGAGAGTGACGTAGGTTTGATTTGCAGTTTTGTTCCAAAAAAGGAAAAGAAAGAAGTTTGATTAGCAGCTGTCCCAAGGGGATGGTTGAATGGTAGAGGTCAAGTGTTCAATGTCAGTTGGAACACTCCCTTGAGTCTATCTAGTTAGCCATGGTGACATGTTTACCCAACAATGTTCTTGTAGGTTGTAACAGGTTGCAAAAGTGAATTAGTCAAGTAGTCAAGGCTGGTGCAAATTGGAAACTTGAAAAACTGAAATTAACTTTTTTTAGTTTTCATGTGACCTAAAACCTGTAAAACACAATTTGAAGGTCAAACTCTCTTCCTTGATAGTTGTCTCAGGAAGGAAGAATGAAATGCAAATAATGTGATCCAAAAATATGGTTTTGACTTTTGTCTCACTTTCCCCACCTTTGCTTTTAAGTTGTTCAATATCTTTTAGGTTCGACTCTTCTGAATAACTTGAATCCAACTGTCTTCTTGCTTCGCTTCTATTATTTTTCTAATTGCTTCATCGAATCTAAGTTTGCGGCAGCAATCCTTTTGCAAAAGCACAGCTTCATCTTGTGAATCTTGCCAAAGGAATCTGAAGAATACCACTGTTGGCAAATATTAACACCTTCACTCTGATTGATTCACTTGTATTGGGAATTAAACACTGTCCACCTATCAATATGTTTTGTTAATATTTCCAAAGGAAACCCTCTCGAGTGGTTTTGTAATCGTCTAATTAGGGGCTTTCTATGTTAGCAGCCAGGCATATACTATGATAGTTTTCATTAATCCTGAAGACAGATTAGGAGTCATCATTCTTAAGGAGGCCACACTTTTTGTGTCATTTTACGTAGTCATTGATGGATCATGAAATGCTTTTTGTTGCTCTCCTAGTGAGTTGTATCTTAGTACACATAGCCTGAGGGGATCATAGAACTCGTGGTGACAAGAAAGTCTGTCTAAGAGATTTGATATCCAATTTCGATCAGGGGCTGTTATTACTGTCTGAACAGCTGAGAAATGAGTGAACATGAAGTGGTCTTGGAGTAATCCCAACTACAAATTTTTGGACTCCTAGTGCAGCATCCGGTTGGGCAACTGTCCTCCAAATTTGGTCAACTCCTTGATATAGAACTAGAAAGATATATGATATCTCTTTTTTGTATCGTGACAGACAGCTCTCGAATACTAAACATTGACAAGTACAGAGGTCTTTTCTTTAATTCTGCCCTTTTTAAAATGCCTCAACTAGGTATTCACAAACGTACAGCTTTATTATGCTGCCGACAGATATCTACATCTTTGAGCTTGATAATTTTCTGTCGAACTTATGACGGGACATCTGTTGTCCCTGTTAGGGCAGGAAGCAAATTTACTTGAAGGACTTGGTCCTAAATTTTTCCAATTACTGAGGTTTACCTACACAGGCACACAAACTTACCTGTCTTATTCATAAATTATAGCTTGAATGAAATCCATTTTTTGTTTTATCAAAACATATGAAACATTCCTTTGTTTTCTTAAATAGGTGGGCGATTGTATATCTTGCACAGCTGAAACCACTCATCGTTCCAGTTTTGAGTGAAGGGGAGTGAGTGCATTGTACGTCAAATTTTGTGTTGATAGTTACTGGAGATTGCTGGACCCTAAGTATTCTTCTCTCAGGCTCTGTAAACTTTTCATCTGCTGCGAATAACTTGATAATTTAATTTGTATATTGTTCACCTCTTATAAAATGGTTCTTTATGAACCACCATTATAATATCCGCAGTCAATTCTGGGCTGAAGGTGAGGACTGTATGTATTTTGGATTGGACTCTGAGTTGGATCAAGGATGATAAATAATCAAATGGCTGTATGTTCTTG</genome_strand>
        <mrna_strand>AATAAGAGGCATCTGAGAGATTGTTGGTTAGATCCATACCACAATGGGATTCCTGGTGACAACTCTAATTTTTGTTGCAATTGGTGTTATTGCATCTCTCTGCGCCAGAATCTGCTGCAATAGAGGGCCTTCTACTAATCT..........................................................................................................................................................................................................................................................................................................................................................................................................GTTACACCTAACATTGATTATCACGGCGACAGTGTGCTGTTGGATGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCGATTGTATATCTTGCACAGCTGAAACCACTCATCGTTCCAGTTTTGAGTGAAGGGGAGTGAGTGCATTGTACGTCAAATTTTGTGTTGATAGTTACTGGAGATTGCTGGACCCTAAGTATTCTTCTCTCAGGCTCTGTAAACTTTTCATCTGCTGCGAATAACTTGATAATTTAATTTGTATATTGTTCACCTCTTATAAAATGGTTCTTTATGAACCACCATTATAATATCCGCAGTCAATTCTGGGCTGAAGGTGAGGACTGTATGTATTTTGGATTGGACTCTGAGTTGGATCAAGGATGATAAATAATCAAATGGCTGTATGTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711152" ref_strand="+" ref_description="SGN-E711152 [FB01AF06]">
      <seq>tgtttctctccataactagaataagaggcatctgagagattgttggttagatccataccacaatgggattcctggtgacaactctaatttttgttgcaattggtgttattgcatctctctgcgccagaatctgctgcaatagagggccttctactaatctgttacacctaacattgattatcacggcgacagtgtgctgttggatgatgtgggcgattgtatatcttgcacagctgaaaccactcatcgttccagttttgagtgaaggggagtgagtgcattgtacgtcaaattttgtgttgatagttactggagattgctggaccctaagtattcttctctcaggctctgtaaacttttcatctgctgcgaataacttgataatttaatttgtatattgttcacctcttataaaatggttctttatgaaccaccattataatatccgcagtcaattctgggctgaaggtgaggactgtatgtattttggattggactctgagttggatcaaggatgataaataatcaaatggctgtatgttcttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="40410" stop="35002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40110" g_stop="40094" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40093" i_stop="39975" i_length="119">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39974" g_stop="39832" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="160" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39831" i_stop="39438" i_length="394">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39437" g_stop="39390" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="208" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39389" i_stop="35642" i_length="3748">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35641" g_stop="35315" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="535" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="547" polyA_stop="563"/>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E711152" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40110" e_stop="40094"/>
          <exon e_start="39974" e_stop="39832"/>
          <exon e_start="39437" e_stop="39390"/>
          <exon e_start="35641" e_stop="35315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCTCTCCATAACTGTACGTCTTCGTCTCTGTATATCTCCATTAGTTTTTGCAGTATACATCTAGTTCATATTATGTGCTTTCGTTCAATTTGATTCTTCCATTTTAAAGTCGAACATTTTTTTGTAATGCAGAGAATAAGAGGCATCTGAGAGATTGTTGGTTAGATCCATACCACAATGGGATTCCTGGTGACAACTCTAATTTTTGTTGCAATTGGTGTTATTGCATCTCTCTGCGCCAGAATCTGCTGCAATAGAGGGCCTTCTACTAATCTGTATGTTATTTTTTTGTTTCATATGGTCTAGATTTCTTTAGTATGACGATACTTACTTTTTTTCATGGATTAATTTACTTGGAACTACTCATAACAGACTTTTATATTTTGTTTCCCAAGTTTAGTTTTCTATGTGCATCTGTAATGTATCAGCTAATGCTGTTTGGTACTTTGGTTATTTCCATCTAGAACTGCTAACTCAAAGGTGAATTCTAAGTCTAGATTAATGATTTATTAATTGTATCTGGCAAAAAATAATTGGGATAGTAAAGTAGTTTTTCCTTCTTCATCAATGGCTTGAGATATTTGAGACTGAATCCTTTGTTAATAATGCTGTGGAAGTATTTAAACTTTTTCTCCCCCTTAATGTTGTTGGTTGTGTTTTATAATGCAGGTTACACCTAACATTGATTATCACGGCGACAGTGTGCTGTTGGATGATGTAAGTGTTATATATGGTTGAAATTTCTGTTATACTTGCGAGACAAGATTAGGAGTAGATTAAAGTATTGCACCATGAAATTCTTATACTTGAATATGTTTGGATGCCTTTAAGTAGAGTATGTAATTTCATATTTTGTCCTTTTGAAGTTTTGGTGGATAAGATAGACTCTTAGTTCGAGGCAACATGGGCAGAAAGAAAAGATTTGTCTGAACCACTGATCGGTCACTAATGCTAAAAGCTTTCCAAATCTAGCAATCAATTAAGCATGTCAAAGAAAATTTGTTTCTAACATTTGTTACCTTTGTCAAAAAAAAAAATTGTTTCTAACACAATGGAATATGTCTTATCCAATGGATCATAATATGAAGCATGGTTAACTGATTCTTTTCTAGAAGAATGAAGTTATCACTTTAGTCTTAGCTTTGGCTGAAGATGCACCTGAGTCTCTCATAATAGCAAGGCAATATTGTCAAAGGTGCACTTAAGGCATGGTGATTTCTACAGTTAGGCTTAATAAAAACTATTACTTTGGATTGCTTAGGTAGCGTTTTAAGGAAGATATAGGATGTTAGGAAATGCGGCTCAGAAAAAGTTAATCAACCAGCAGTTTGTAAAAAAATTAGGTGAATTTGGGTGGCTCTTGGCTCTACCTTGAAGAGGACAACACTTAAAAGATAAATATAATAGAAAAATGACGTCTTAATTGATAAAACAAAACATTGCAGATGAACACAAATATTATTAAGAAATACTGTTTTCTTAACTTAATAACTTTGATATTACCAATACTGTTTAAAATGAAGTTATTAATAAGGGATAAGAAATTAGAATTTTGTTTAAGAAATACTACAACAACAATAACAACTACAACTATACCTCAATCCCAAGCAAGTTGGGGTTGACTATATGAATCCTCATTGTCCATGTCGATCCATTGAAACTTATCTCAGTCCAGAAAAGTACATCTTTGCTTCTGCATTTAATTGACTTTGAACTCAATTATTGGTTGCGACTTAATATATTATGTCATAACAAAATTTTCAATTATCTATTTAAAAAATTGTTGTTTCATTATCATGGTTATTGTTTCTAGCTTTATATTTTTTTATTCATAATGATTTATGTGCATTTCTACACTAAAGCACATTTTTTTTTTAATTTTTTCATAGAAGCTCCAGCAGACCTGTAACATTTAGCAGTTAAAACTTAGTTAGTGTAACCTAAACATCAGCTTGTGTGAGAAAAAGCAAATGATATATACGAAGCGAACAATGTTCAACTTGAGCTAAGGCTCAGTTGGAAGAAAATAAATAGATATCTTGATTCCTTTTTCTTGATAAAGAAGAGGCCATGTTAAAATTGAGATTGAGATAGAGAATGCAATATTTCGAGAAGATTTAGGGGTGTTGTAACTTTTTTTTTGTTATAATAAGGGAAATACGCAGCCGTTACCCTTTGGGTGCGCACAAAGTAAAGCCCTTTACCCTGCTCTTATGCAATAGTTCACAAACCACACAGGGAGGTAACCCGCATTAGGCAAGCCCGGTGCGAAGAGCTCGACCCAAAAGGCTAACCCCTTGCTTTCGCTGGCAAGGGATTACGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCAATGCTGCGGAAAGGTTGAAAATATAGAAGACTCGAGAATTGACATAATTTTTTCATGTGTTTATTTACTTGTAAAATAATACTATGTGAAGCAGCGGAAAGGGAGCAATAAAACCTTACTCATGTTAGAAAATGATTCTCCTAGCAATAGTTTATGGAGAGTAGAGTCAGTAAACTAGGCGAGCTCATCTGCCTGTTACCTATTTGGCCACAAGGTTCTGAAGTGCAAGCATGCACCAAATTGAATTAACAATTTTATGAAATTACTCATTCAACTTCTATCACATGAAATACTCCACAAGTTTTCTGGTAGACTCATAAAGAAAAATATTGAAAGTTTACATTCAAATAGGAAAAGCTGGATCAGGTTTAACTGTAAACATAAAAAATCCTTCTGCCCTAGCCTATTTGACGAAATATGACTTTAATGGACAAATTTCTGATATGATCAGGATGCTTTAATAAATTTGTGAATTACTACCTCAGATGGGATATTTAACTTCTCTCTAAATACTCGAGGTTCAATTTCAAAGTTAGTCTTATCTTTAACTTACTGATAATTTTTACATAACCATATTGCAAAGAGAGTGACGTAGGTTTGATTTGCAGTTTTGTTCCAAAAAAGGAAAAGAAAGAAGTTTGATTAGCAGCTGTCCCAAGGGGATGGTTGAATGGTAGAGGTCAAGTGTTCAATGTCAGTTGGAACACTCCCTTGAGTCTATCTAGTTAGCCATGGTGACATGTTTACCCAACAATGTTCTTGTAGGTTGTAACAGGTTGCAAAAGTGAATTAGTCAAGTAGTCAAGGCTGGTGCAAATTGGAAACTTGAAAAACTGAAATTAACTTTTTTTAGTTTTCATGTGACCTAAAACCTGTAAAACACAATTTGAAGGTCAAACTCTCTTCCTTGATAGTTGTCTCAGGAAGGAAGAATGAAATGCAAATAATGTGATCCAAAAATATGGTTTTGACTTTTGTCTCACTTTCCCCACCTTTGCTTTTAAGTTGTTCAATATCTTTTAGGTTCGACTCTTCTGAATAACTTGAATCCAACTGTCTTCTTGCTTCGCTTCTATTATTTTTCTAATTGCTTCATCGAATCTAAGTTTGCGGCAGCAATCCTTTTGCAAAAGCACAGCTTCATCTTGTGAATCTTGCCAAAGGAATCTGAAGAATACCACTGTTGGCAAATATTAACACCTTCACTCTGATTGATTCACTTGTATTGGGAATTAAACACTGTCCACCTATCAATATGTTTTGTTAATATTTCCAAAGGAAACCCTCTCGAGTGGTTTTGTAATCGTCTAATTAGGGGCTTTCTATGTTAGCAGCCAGGCATATACTATGATAGTTTTCATTAATCCTGAAGACAGATTAGGAGTCATCATTCTTAAGGAGGCCACACTTTTTGTGTCATTTTACGTAGTCATTGATGGATCATGAAATGCTTTTTGTTGCTCTCCTAGTGAGTTGTATCTTAGTACACATAGCCTGAGGGGATCATAGAACTCGTGGTGACAAGAAAGTCTGTCTAAGAGATTTGATATCCAATTTCGATCAGGGGCTGTTATTACTGTCTGAACAGCTGAGAAATGAGTGAACATGAAGTGGTCTTGGAGTAATCCCAACTACAAATTTTTGGACTCCTAGTGCAGCATCCGGTTGGGCAACTGTCCTCCAAATTTGGTCAACTCCTTGATATAGAACTAGAAAGATATATGATATCTCTTTTTTGTATCGTGACAGACAGCTCTCGAATACTAAACATTGACAAGTACAGAGGTCTTTTCTTTAATTCTGCCCTTTTTAAAATGCCTCAACTAGGTATTCACAAACGTACAGCTTTATTATGCTGCCGACAGATATCTACATCTTTGAGCTTGATAATTTTCTGTCGAACTTATGACGGGACATCTGTTGTCCCTGTTAGGGCAGGAAGCAAATTTACTTGAAGGACTTGGTCCTAAATTTTTCCAATTACTGAGGTTTACCTACACAGGCACACAAACTTACCTGTCTTATTCATAAATTATAGCTTGAATGAAATCCATTTTTTGTTTTATCAAAACATATGAAACATTCCTTTGTTTTCTTAAATAGGTGGGCGATTGTATATCTTGCACAGCTGAAACCACTCATCGTTCCAGTTTTGAGTGAAGGGGAGTGAGTGCATTGTACGTCAAATTTTGTGTTGATAGTTACTGGAGATTGCTGGACCCTAAGTATTCTTCTCTCAGGCTCTGTAAACTTTTCATCTGCTGCGAATAACTTGATAATTTAATTTGTATATTGTTCACCTCTTATAAAATGGTTCTTTATGAACCACCATTATAATATCCGCAGTCAATTCTGGGCTGAAGGTGAGGACTGTATGTATTTTGGATTGGACTCTGAGTTGGATCAAGGATGATAAATAATCAAATGGCT</genome_strand>
        <mrna_strand>TGTTTCTCTCCATAACT.......................................................................................................................AGAATAAGAGGCATCTGAGAGATTGTTGGTTAGATCCATACCACAATGGGATTCCTGGTGACAACTCTAATTTTTGTTGCAATTGGTGTTATTGCATCTCTCTGCGCCAGAATCTGCTGCAATAGAGGGCCTTCTACTAATCT..........................................................................................................................................................................................................................................................................................................................................................................................................GTTACACCTAACATTGATTATCACGGCGACAGTGTGCTGTTGGATGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCGATTGTATATCTTGCACAGCTGAAACCACTCATCGTTCCAGTTTTGAGTGAAGGGGAGTGAGTGCATTGTACGTCAAATTTTGTGTTGATAGTTACTGGAGATTGCTGGACCCTAAGTATTCTTCTCTCAGGCTCTGTAAACTTTTCATCTGCTGCGAATAACTTGATAATTTAATTTGTATATTGTTCACCTCTTATAAAATGGTTCTTTATGAACCACCATTATAATATCCGCAGTCAATTCTGGGCTGAAGGTGAGGACTGTATGTATTTTGGATTGGACTCTGAGTTGGATCAAGGATGATAAATAATCAAATGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732956" ref_strand="+" ref_description="SGN-E732956 [LB03CD05]">
      <seq>gtttctctccataactagaataagaggcatctgagagattgttggttagatccataccacaatgggattcctggtgacaactctaatttttgttgcaattggtgttattgcatctctctgcgccagaatctgctgcaatagagggccttctactaatctgttacacctaacattgattatcacggcgacagtgtgctgttggatgatgtgggcgattgtatatcttgcacagctgaaaccactcatcgttccagttttgagtgaaggggagtgagtgcattgtacgtcaaattttgtgttgatagttactggagattgctggaccctaagtattcttctctcaggctctgtaaacttttcatctgctgcgaataacttgataatttaatttgtatattgttcacctcttataaaatggttctttatgaaccaccattataatatccgcagtcaattctgggctgaaggtgaggactgtatgtattttggattggactctgagttggatcaaggatgataaataatcaaatggctgtatgttcttgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="40274" stop="35002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40109" g_stop="40094" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40093" i_stop="39975" i_length="119">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39974" g_stop="39832" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="159" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39831" i_stop="39438" i_length="394">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39437" g_stop="39390" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="207" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39389" i_stop="35642" i_length="3748">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35641" g_stop="35315" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="534" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="547" polyA_stop="556"/>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E732956" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40109" e_stop="40094"/>
          <exon e_start="39974" e_stop="39832"/>
          <exon e_start="39437" e_stop="39390"/>
          <exon e_start="35641" e_stop="35315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTCTCCATAACTGTACGTCTTCGTCTCTGTATATCTCCATTAGTTTTTGCAGTATACATCTAGTTCATATTATGTGCTTTCGTTCAATTTGATTCTTCCATTTTAAAGTCGAACATTTTTTTGTAATGCAGAGAATAAGAGGCATCTGAGAGATTGTTGGTTAGATCCATACCACAATGGGATTCCTGGTGACAACTCTAATTTTTGTTGCAATTGGTGTTATTGCATCTCTCTGCGCCAGAATCTGCTGCAATAGAGGGCCTTCTACTAATCTGTATGTTATTTTTTTGTTTCATATGGTCTAGATTTCTTTAGTATGACGATACTTACTTTTTTTCATGGATTAATTTACTTGGAACTACTCATAACAGACTTTTATATTTTGTTTCCCAAGTTTAGTTTTCTATGTGCATCTGTAATGTATCAGCTAATGCTGTTTGGTACTTTGGTTATTTCCATCTAGAACTGCTAACTCAAAGGTGAATTCTAAGTCTAGATTAATGATTTATTAATTGTATCTGGCAAAAAATAATTGGGATAGTAAAGTAGTTTTTCCTTCTTCATCAATGGCTTGAGATATTTGAGACTGAATCCTTTGTTAATAATGCTGTGGAAGTATTTAAACTTTTTCTCCCCCTTAATGTTGTTGGTTGTGTTTTATAATGCAGGTTACACCTAACATTGATTATCACGGCGACAGTGTGCTGTTGGATGATGTAAGTGTTATATATGGTTGAAATTTCTGTTATACTTGCGAGACAAGATTAGGAGTAGATTAAAGTATTGCACCATGAAATTCTTATACTTGAATATGTTTGGATGCCTTTAAGTAGAGTATGTAATTTCATATTTTGTCCTTTTGAAGTTTTGGTGGATAAGATAGACTCTTAGTTCGAGGCAACATGGGCAGAAAGAAAAGATTTGTCTGAACCACTGATCGGTCACTAATGCTAAAAGCTTTCCAAATCTAGCAATCAATTAAGCATGTCAAAGAAAATTTGTTTCTAACATTTGTTACCTTTGTCAAAAAAAAAAATTGTTTCTAACACAATGGAATATGTCTTATCCAATGGATCATAATATGAAGCATGGTTAACTGATTCTTTTCTAGAAGAATGAAGTTATCACTTTAGTCTTAGCTTTGGCTGAAGATGCACCTGAGTCTCTCATAATAGCAAGGCAATATTGTCAAAGGTGCACTTAAGGCATGGTGATTTCTACAGTTAGGCTTAATAAAAACTATTACTTTGGATTGCTTAGGTAGCGTTTTAAGGAAGATATAGGATGTTAGGAAATGCGGCTCAGAAAAAGTTAATCAACCAGCAGTTTGTAAAAAAATTAGGTGAATTTGGGTGGCTCTTGGCTCTACCTTGAAGAGGACAACACTTAAAAGATAAATATAATAGAAAAATGACGTCTTAATTGATAAAACAAAACATTGCAGATGAACACAAATATTATTAAGAAATACTGTTTTCTTAACTTAATAACTTTGATATTACCAATACTGTTTAAAATGAAGTTATTAATAAGGGATAAGAAATTAGAATTTTGTTTAAGAAATACTACAACAACAATAACAACTACAACTATACCTCAATCCCAAGCAAGTTGGGGTTGACTATATGAATCCTCATTGTCCATGTCGATCCATTGAAACTTATCTCAGTCCAGAAAAGTACATCTTTGCTTCTGCATTTAATTGACTTTGAACTCAATTATTGGTTGCGACTTAATATATTATGTCATAACAAAATTTTCAATTATCTATTTAAAAAATTGTTGTTTCATTATCATGGTTATTGTTTCTAGCTTTATATTTTTTTATTCATAATGATTTATGTGCATTTCTACACTAAAGCACATTTTTTTTTTAATTTTTTCATAGAAGCTCCAGCAGACCTGTAACATTTAGCAGTTAAAACTTAGTTAGTGTAACCTAAACATCAGCTTGTGTGAGAAAAAGCAAATGATATATACGAAGCGAACAATGTTCAACTTGAGCTAAGGCTCAGTTGGAAGAAAATAAATAGATATCTTGATTCCTTTTTCTTGATAAAGAAGAGGCCATGTTAAAATTGAGATTGAGATAGAGAATGCAATATTTCGAGAAGATTTAGGGGTGTTGTAACTTTTTTTTTGTTATAATAAGGGAAATACGCAGCCGTTACCCTTTGGGTGCGCACAAAGTAAAGCCCTTTACCCTGCTCTTATGCAATAGTTCACAAACCACACAGGGAGGTAACCCGCATTAGGCAAGCCCGGTGCGAAGAGCTCGACCCAAAAGGCTAACCCCTTGCTTTCGCTGGCAAGGGATTACGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCAATGCTGCGGAAAGGTTGAAAATATAGAAGACTCGAGAATTGACATAATTTTTTCATGTGTTTATTTACTTGTAAAATAATACTATGTGAAGCAGCGGAAAGGGAGCAATAAAACCTTACTCATGTTAGAAAATGATTCTCCTAGCAATAGTTTATGGAGAGTAGAGTCAGTAAACTAGGCGAGCTCATCTGCCTGTTACCTATTTGGCCACAAGGTTCTGAAGTGCAAGCATGCACCAAATTGAATTAACAATTTTATGAAATTACTCATTCAACTTCTATCACATGAAATACTCCACAAGTTTTCTGGTAGACTCATAAAGAAAAATATTGAAAGTTTACATTCAAATAGGAAAAGCTGGATCAGGTTTAACTGTAAACATAAAAAATCCTTCTGCCCTAGCCTATTTGACGAAATATGACTTTAATGGACAAATTTCTGATATGATCAGGATGCTTTAATAAATTTGTGAATTACTACCTCAGATGGGATATTTAACTTCTCTCTAAATACTCGAGGTTCAATTTCAAAGTTAGTCTTATCTTTAACTTACTGATAATTTTTACATAACCATATTGCAAAGAGAGTGACGTAGGTTTGATTTGCAGTTTTGTTCCAAAAAAGGAAAAGAAAGAAGTTTGATTAGCAGCTGTCCCAAGGGGATGGTTGAATGGTAGAGGTCAAGTGTTCAATGTCAGTTGGAACACTCCCTTGAGTCTATCTAGTTAGCCATGGTGACATGTTTACCCAACAATGTTCTTGTAGGTTGTAACAGGTTGCAAAAGTGAATTAGTCAAGTAGTCAAGGCTGGTGCAAATTGGAAACTTGAAAAACTGAAATTAACTTTTTTTAGTTTTCATGTGACCTAAAACCTGTAAAACACAATTTGAAGGTCAAACTCTCTTCCTTGATAGTTGTCTCAGGAAGGAAGAATGAAATGCAAATAATGTGATCCAAAAATATGGTTTTGACTTTTGTCTCACTTTCCCCACCTTTGCTTTTAAGTTGTTCAATATCTTTTAGGTTCGACTCTTCTGAATAACTTGAATCCAACTGTCTTCTTGCTTCGCTTCTATTATTTTTCTAATTGCTTCATCGAATCTAAGTTTGCGGCAGCAATCCTTTTGCAAAAGCACAGCTTCATCTTGTGAATCTTGCCAAAGGAATCTGAAGAATACCACTGTTGGCAAATATTAACACCTTCACTCTGATTGATTCACTTGTATTGGGAATTAAACACTGTCCACCTATCAATATGTTTTGTTAATATTTCCAAAGGAAACCCTCTCGAGTGGTTTTGTAATCGTCTAATTAGGGGCTTTCTATGTTAGCAGCCAGGCATATACTATGATAGTTTTCATTAATCCTGAAGACAGATTAGGAGTCATCATTCTTAAGGAGGCCACACTTTTTGTGTCATTTTACGTAGTCATTGATGGATCATGAAATGCTTTTTGTTGCTCTCCTAGTGAGTTGTATCTTAGTACACATAGCCTGAGGGGATCATAGAACTCGTGGTGACAAGAAAGTCTGTCTAAGAGATTTGATATCCAATTTCGATCAGGGGCTGTTATTACTGTCTGAACAGCTGAGAAATGAGTGAACATGAAGTGGTCTTGGAGTAATCCCAACTACAAATTTTTGGACTCCTAGTGCAGCATCCGGTTGGGCAACTGTCCTCCAAATTTGGTCAACTCCTTGATATAGAACTAGAAAGATATATGATATCTCTTTTTTGTATCGTGACAGACAGCTCTCGAATACTAAACATTGACAAGTACAGAGGTCTTTTCTTTAATTCTGCCCTTTTTAAAATGCCTCAACTAGGTATTCACAAACGTACAGCTTTATTATGCTGCCGACAGATATCTACATCTTTGAGCTTGATAATTTTCTGTCGAACTTATGACGGGACATCTGTTGTCCCTGTTAGGGCAGGAAGCAAATTTACTTGAAGGACTTGGTCCTAAATTTTTCCAATTACTGAGGTTTACCTACACAGGCACACAAACTTACCTGTCTTATTCATAAATTATAGCTTGAATGAAATCCATTTTTTGTTTTATCAAAACATATGAAACATTCCTTTGTTTTCTTAAATAGGTGGGCGATTGTATATCTTGCACAGCTGAAACCACTCATCGTTCCAGTTTTGAGTGAAGGGGAGTGAGTGCATTGTACGTCAAATTTTGTGTTGATAGTTACTGGAGATTGCTGGACCCTAAGTATTCTTCTCTCAGGCTCTGTAAACTTTTCATCTGCTGCGAATAACTTGATAATTTAATTTGTATATTGTTCACCTCTTATAAAATGGTTCTTTATGAACCACCATTATAATATCCGCAGTCAATTCTGGGCTGAAGGTGAGGACTGTATGTATTTTGGATTGGACTCTGAGTTGGATCAAGGATGATAAATAATCAAATGGCT</genome_strand>
        <mrna_strand>GTTTCTCTCCATAACT.......................................................................................................................AGAATAAGAGGCATCTGAGAGATTGTTGGTTAGATCCATACCACAATGGGATTCCTGGTGACAACTCTAATTTTTGTTGCAATTGGTGTTATTGCATCTCTCTGCGCCAGAATCTGCTGCAATAGAGGGCCTTCTACTAATCT..........................................................................................................................................................................................................................................................................................................................................................................................................GTTACACCTAACATTGATTATCACGGCGACAGTGTGCTGTTGGATGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCGATTGTATATCTTGCACAGCTGAAACCACTCATCGTTCCAGTTTTGAGTGAAGGGGAGTGAGTGCATTGTACGTCAAATTTTGTGTTGATAGTTACTGGAGATTGCTGGACCCTAAGTATTCTTCTCTCAGGCTCTGTAAACTTTTCATCTGCTGCGAATAACTTGATAATTTAATTTGTATATTGTTCACCTCTTATAAAATGGTTCTTTATGAACCACCATTATAATATCCGCAGTCAATTCTGGGCTGAAGGTGAGGACTGTATGTATTTTGGATTGGACTCTGAGTTGGATCAAGGATGATAAATAATCAAATGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317586" ref_strand="+" ref_description="SGN-E317586 [cTOB-8-G13]">
      <seq>tcaatccaacttccgatccagcttgtctctctgtttctctccataactagaataagaggcatctgagagattgttggttagatccataccacaatgggattcctggtgacaactctaatttttgttgcaattggtgttattgcatctctctgcgccagaatctgctgcaatagagggccttctactaatctgttacacctaacattgattatcacggcgacagtgtgctgttggatgatgtgggcgattgtatatcttgcacagctgaaaccactcatcgttccagttttgagtgaaggggagtgagtgcattgtacgtcaaattttgtgttgatagttactggagattgctggaccctaagtattcttctctcaggctctgtaaacttttcatctgctgcgaataacttgataatttaatttgtatattggtcacctcttataaaatggttctttatgaaccaccattataatatccgcagtcaattctgggctgaaggtgaggactgtatgtattttggattggactctgagctggatcaaggatgataaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="40441" stop="35027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40141" g_stop="40094" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40093" i_stop="39975" i_length="119">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39974" g_stop="39832" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="191" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39831" i_stop="39438" i_length="394">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39437" g_stop="39390" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="239" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39389" i_stop="35642" i_length="3748">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35641" g_stop="35327" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="554" r_length="315" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E317586" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40141" e_stop="40094"/>
          <exon e_start="39974" e_stop="39832"/>
          <exon e_start="39437" e_stop="39390"/>
          <exon e_start="35641" e_stop="35327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCCAACTTCCGATCCAGCTTCTCTCTCTGTTTCTCTCCATAACTGTACGTCTTCGTCTCTGTATATCTCCATTAGTTTTTGCAGTATACATCTAGTTCATATTATGTGCTTTCGTTCAATTTGATTCTTCCATTTTAAAGTCGAACATTTTTTTGTAATGCAGAGAATAAGAGGCATCTGAGAGATTGTTGGTTAGATCCATACCACAATGGGATTCCTGGTGACAACTCTAATTTTTGTTGCAATTGGTGTTATTGCATCTCTCTGCGCCAGAATCTGCTGCAATAGAGGGCCTTCTACTAATCTGTATGTTATTTTTTTGTTTCATATGGTCTAGATTTCTTTAGTATGACGATACTTACTTTTTTTCATGGATTAATTTACTTGGAACTACTCATAACAGACTTTTATATTTTGTTTCCCAAGTTTAGTTTTCTATGTGCATCTGTAATGTATCAGCTAATGCTGTTTGGTACTTTGGTTATTTCCATCTAGAACTGCTAACTCAAAGGTGAATTCTAAGTCTAGATTAATGATTTATTAATTGTATCTGGCAAAAAATAATTGGGATAGTAAAGTAGTTTTTCCTTCTTCATCAATGGCTTGAGATATTTGAGACTGAATCCTTTGTTAATAATGCTGTGGAAGTATTTAAACTTTTTCTCCCCCTTAATGTTGTTGGTTGTGTTTTATAATGCAGGTTACACCTAACATTGATTATCACGGCGACAGTGTGCTGTTGGATGATGTAAGTGTTATATATGGTTGAAATTTCTGTTATACTTGCGAGACAAGATTAGGAGTAGATTAAAGTATTGCACCATGAAATTCTTATACTTGAATATGTTTGGATGCCTTTAAGTAGAGTATGTAATTTCATATTTTGTCCTTTTGAAGTTTTGGTGGATAAGATAGACTCTTAGTTCGAGGCAACATGGGCAGAAAGAAAAGATTTGTCTGAACCACTGATCGGTCACTAATGCTAAAAGCTTTCCAAATCTAGCAATCAATTAAGCATGTCAAAGAAAATTTGTTTCTAACATTTGTTACCTTTGTCAAAAAAAAAAATTGTTTCTAACACAATGGAATATGTCTTATCCAATGGATCATAATATGAAGCATGGTTAACTGATTCTTTTCTAGAAGAATGAAGTTATCACTTTAGTCTTAGCTTTGGCTGAAGATGCACCTGAGTCTCTCATAATAGCAAGGCAATATTGTCAAAGGTGCACTTAAGGCATGGTGATTTCTACAGTTAGGCTTAATAAAAACTATTACTTTGGATTGCTTAGGTAGCGTTTTAAGGAAGATATAGGATGTTAGGAAATGCGGCTCAGAAAAAGTTAATCAACCAGCAGTTTGTAAAAAAATTAGGTGAATTTGGGTGGCTCTTGGCTCTACCTTGAAGAGGACAACACTTAAAAGATAAATATAATAGAAAAATGACGTCTTAATTGATAAAACAAAACATTGCAGATGAACACAAATATTATTAAGAAATACTGTTTTCTTAACTTAATAACTTTGATATTACCAATACTGTTTAAAATGAAGTTATTAATAAGGGATAAGAAATTAGAATTTTGTTTAAGAAATACTACAACAACAATAACAACTACAACTATACCTCAATCCCAAGCAAGTTGGGGTTGACTATATGAATCCTCATTGTCCATGTCGATCCATTGAAACTTATCTCAGTCCAGAAAAGTACATCTTTGCTTCTGCATTTAATTGACTTTGAACTCAATTATTGGTTGCGACTTAATATATTATGTCATAACAAAATTTTCAATTATCTATTTAAAAAATTGTTGTTTCATTATCATGGTTATTGTTTCTAGCTTTATATTTTTTTATTCATAATGATTTATGTGCATTTCTACACTAAAGCACATTTTTTTTTTAATTTTTTCATAGAAGCTCCAGCAGACCTGTAACATTTAGCAGTTAAAACTTAGTTAGTGTAACCTAAACATCAGCTTGTGTGAGAAAAAGCAAATGATATATACGAAGCGAACAATGTTCAACTTGAGCTAAGGCTCAGTTGGAAGAAAATAAATAGATATCTTGATTCCTTTTTCTTGATAAAGAAGAGGCCATGTTAAAATTGAGATTGAGATAGAGAATGCAATATTTCGAGAAGATTTAGGGGTGTTGTAACTTTTTTTTTGTTATAATAAGGGAAATACGCAGCCGTTACCCTTTGGGTGCGCACAAAGTAAAGCCCTTTACCCTGCTCTTATGCAATAGTTCACAAACCACACAGGGAGGTAACCCGCATTAGGCAAGCCCGGTGCGAAGAGCTCGACCCAAAAGGCTAACCCCTTGCTTTCGCTGGCAAGGGATTACGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCAATGCTGCGGAAAGGTTGAAAATATAGAAGACTCGAGAATTGACATAATTTTTTCATGTGTTTATTTACTTGTAAAATAATACTATGTGAAGCAGCGGAAAGGGAGCAATAAAACCTTACTCATGTTAGAAAATGATTCTCCTAGCAATAGTTTATGGAGAGTAGAGTCAGTAAACTAGGCGAGCTCATCTGCCTGTTACCTATTTGGCCACAAGGTTCTGAAGTGCAAGCATGCACCAAATTGAATTAACAATTTTATGAAATTACTCATTCAACTTCTATCACATGAAATACTCCACAAGTTTTCTGGTAGACTCATAAAGAAAAATATTGAAAGTTTACATTCAAATAGGAAAAGCTGGATCAGGTTTAACTGTAAACATAAAAAATCCTTCTGCCCTAGCCTATTTGACGAAATATGACTTTAATGGACAAATTTCTGATATGATCAGGATGCTTTAATAAATTTGTGAATTACTACCTCAGATGGGATATTTAACTTCTCTCTAAATACTCGAGGTTCAATTTCAAAGTTAGTCTTATCTTTAACTTACTGATAATTTTTACATAACCATATTGCAAAGAGAGTGACGTAGGTTTGATTTGCAGTTTTGTTCCAAAAAAGGAAAAGAAAGAAGTTTGATTAGCAGCTGTCCCAAGGGGATGGTTGAATGGTAGAGGTCAAGTGTTCAATGTCAGTTGGAACACTCCCTTGAGTCTATCTAGTTAGCCATGGTGACATGTTTACCCAACAATGTTCTTGTAGGTTGTAACAGGTTGCAAAAGTGAATTAGTCAAGTAGTCAAGGCTGGTGCAAATTGGAAACTTGAAAAACTGAAATTAACTTTTTTTAGTTTTCATGTGACCTAAAACCTGTAAAACACAATTTGAAGGTCAAACTCTCTTCCTTGATAGTTGTCTCAGGAAGGAAGAATGAAATGCAAATAATGTGATCCAAAAATATGGTTTTGACTTTTGTCTCACTTTCCCCACCTTTGCTTTTAAGTTGTTCAATATCTTTTAGGTTCGACTCTTCTGAATAACTTGAATCCAACTGTCTTCTTGCTTCGCTTCTATTATTTTTCTAATTGCTTCATCGAATCTAAGTTTGCGGCAGCAATCCTTTTGCAAAAGCACAGCTTCATCTTGTGAATCTTGCCAAAGGAATCTGAAGAATACCACTGTTGGCAAATATTAACACCTTCACTCTGATTGATTCACTTGTATTGGGAATTAAACACTGTCCACCTATCAATATGTTTTGTTAATATTTCCAAAGGAAACCCTCTCGAGTGGTTTTGTAATCGTCTAATTAGGGGCTTTCTATGTTAGCAGCCAGGCATATACTATGATAGTTTTCATTAATCCTGAAGACAGATTAGGAGTCATCATTCTTAAGGAGGCCACACTTTTTGTGTCATTTTACGTAGTCATTGATGGATCATGAAATGCTTTTTGTTGCTCTCCTAGTGAGTTGTATCTTAGTACACATAGCCTGAGGGGATCATAGAACTCGTGGTGACAAGAAAGTCTGTCTAAGAGATTTGATATCCAATTTCGATCAGGGGCTGTTATTACTGTCTGAACAGCTGAGAAATGAGTGAACATGAAGTGGTCTTGGAGTAATCCCAACTACAAATTTTTGGACTCCTAGTGCAGCATCCGGTTGGGCAACTGTCCTCCAAATTTGGTCAACTCCTTGATATAGAACTAGAAAGATATATGATATCTCTTTTTTGTATCGTGACAGACAGCTCTCGAATACTAAACATTGACAAGTACAGAGGTCTTTTCTTTAATTCTGCCCTTTTTAAAATGCCTCAACTAGGTATTCACAAACGTACAGCTTTATTATGCTGCCGACAGATATCTACATCTTTGAGCTTGATAATTTTCTGTCGAACTTATGACGGGACATCTGTTGTCCCTGTTAGGGCAGGAAGCAAATTTACTTGAAGGACTTGGTCCTAAATTTTTCCAATTACTGAGGTTTACCTACACAGGCACACAAACTTACCTGTCTTATTCATAAATTATAGCTTGAATGAAATCCATTTTTTGTTTTATCAAAACATATGAAACATTCCTTTGTTTTCTTAAATAGGTGGGCGATTGTATATCTTGCACAGCTGAAACCACTCATCGTTCCAGTTTTGAGTGAAGGGGAGTGAGTGCATTGTACGTCAAATTTTGTGTTGATAGTTACTGGAGATTGCTGGACCCTAAGTATTCTTCTCTCAGGCTCTGTAAACTTTTCATCTGCTGCGAATAACTTGATAATTTAATTTGTATATTGTTCACCTCTTATAAAATGGTTCTTTATGAACCACCATTATAATATCCGCAGTCAATTCTGGGCTGAAGGTGAGGACTGTATGTATTTTGGATTGGACTCTGAGTTGGATCAAGGATGATAAAT</genome_strand>
        <mrna_strand>TCAATCCAACTTCCGATCCAGCTTGTCTCTCTGTTTCTCTCCATAACT.......................................................................................................................AGAATAAGAGGCATCTGAGAGATTGTTGGTTAGATCCATACCACAATGGGATTCCTGGTGACAACTCTAATTTTTGTTGCAATTGGTGTTATTGCATCTCTCTGCGCCAGAATCTGCTGCAATAGAGGGCCTTCTACTAATCT..........................................................................................................................................................................................................................................................................................................................................................................................................GTTACACCTAACATTGATTATCACGGCGACAGTGTGCTGTTGGATGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCGATTGTATATCTTGCACAGCTGAAACCACTCATCGTTCCAGTTTTGAGTGAAGGGGAGTGAGTGCATTGTACGTCAAATTTTGTGTTGATAGTTACTGGAGATTGCTGGACCCTAAGTATTCTTCTCTCAGGCTCTGTAAACTTTTCATCTGCTGCGAATAACTTGATAATTTAATTTGTATATTGGTCACCTCTTATAAAATGGTTCTTTATGAACCACCATTATAATATCCGCAGTCAATTCTGGGCTGAAGGTGAGGACTGTATGTATTTTGGATTGGACTCTGAGCTGGATCAAGGATGATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335719" ref_strand="+" ref_description="SGN-E335719 [cTOE-8-B5]">
      <seq>tttctctccataactagaataagaggcatctgagagattgttggttagatccataccacaatgggattcctggtgacaactctaatttttgttgcaattggtgttattgcatctctctgcgccagaatctgctgcaatagagggccttctactaatctgttacacctaacattgattatcacggcgacagtgtgctgttggatgatgtgggcgattgtatatcttgcacagctgaaaccactcatcgttccagttttgagtgaaggggagtgagtgcattgtacgtcaaattttgtgttgatagttactggagattgctggaccctaagtattcttctctcaggctctgtaaacttttcatctgctgcgaataacttgataatttaatttgtatattgttcacctcttataaaatggttctttatgaaccaccattataatatccgcagtcaattctgggctgaaggtgaggactgtatgtattttggattggactctgagttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="40274" stop="35041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40108" g_stop="40094" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40093" i_stop="39975" i_length="119">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39974" g_stop="39832" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="158" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39831" i_stop="39438" i_length="394">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39437" g_stop="39390" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="206" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39389" i_stop="35642" i_length="3748">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35641" g_stop="35341" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="507" r_length="301" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E335719" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40108" e_stop="40094"/>
          <exon e_start="39974" e_stop="39832"/>
          <exon e_start="39437" e_stop="39390"/>
          <exon e_start="35641" e_stop="35341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCCATAACTGTACGTCTTCGTCTCTGTATATCTCCATTAGTTTTTGCAGTATACATCTAGTTCATATTATGTGCTTTCGTTCAATTTGATTCTTCCATTTTAAAGTCGAACATTTTTTTGTAATGCAGAGAATAAGAGGCATCTGAGAGATTGTTGGTTAGATCCATACCACAATGGGATTCCTGGTGACAACTCTAATTTTTGTTGCAATTGGTGTTATTGCATCTCTCTGCGCCAGAATCTGCTGCAATAGAGGGCCTTCTACTAATCTGTATGTTATTTTTTTGTTTCATATGGTCTAGATTTCTTTAGTATGACGATACTTACTTTTTTTCATGGATTAATTTACTTGGAACTACTCATAACAGACTTTTATATTTTGTTTCCCAAGTTTAGTTTTCTATGTGCATCTGTAATGTATCAGCTAATGCTGTTTGGTACTTTGGTTATTTCCATCTAGAACTGCTAACTCAAAGGTGAATTCTAAGTCTAGATTAATGATTTATTAATTGTATCTGGCAAAAAATAATTGGGATAGTAAAGTAGTTTTTCCTTCTTCATCAATGGCTTGAGATATTTGAGACTGAATCCTTTGTTAATAATGCTGTGGAAGTATTTAAACTTTTTCTCCCCCTTAATGTTGTTGGTTGTGTTTTATAATGCAGGTTACACCTAACATTGATTATCACGGCGACAGTGTGCTGTTGGATGATGTAAGTGTTATATATGGTTGAAATTTCTGTTATACTTGCGAGACAAGATTAGGAGTAGATTAAAGTATTGCACCATGAAATTCTTATACTTGAATATGTTTGGATGCCTTTAAGTAGAGTATGTAATTTCATATTTTGTCCTTTTGAAGTTTTGGTGGATAAGATAGACTCTTAGTTCGAGGCAACATGGGCAGAAAGAAAAGATTTGTCTGAACCACTGATCGGTCACTAATGCTAAAAGCTTTCCAAATCTAGCAATCAATTAAGCATGTCAAAGAAAATTTGTTTCTAACATTTGTTACCTTTGTCAAAAAAAAAAATTGTTTCTAACACAATGGAATATGTCTTATCCAATGGATCATAATATGAAGCATGGTTAACTGATTCTTTTCTAGAAGAATGAAGTTATCACTTTAGTCTTAGCTTTGGCTGAAGATGCACCTGAGTCTCTCATAATAGCAAGGCAATATTGTCAAAGGTGCACTTAAGGCATGGTGATTTCTACAGTTAGGCTTAATAAAAACTATTACTTTGGATTGCTTAGGTAGCGTTTTAAGGAAGATATAGGATGTTAGGAAATGCGGCTCAGAAAAAGTTAATCAACCAGCAGTTTGTAAAAAAATTAGGTGAATTTGGGTGGCTCTTGGCTCTACCTTGAAGAGGACAACACTTAAAAGATAAATATAATAGAAAAATGACGTCTTAATTGATAAAACAAAACATTGCAGATGAACACAAATATTATTAAGAAATACTGTTTTCTTAACTTAATAACTTTGATATTACCAATACTGTTTAAAATGAAGTTATTAATAAGGGATAAGAAATTAGAATTTTGTTTAAGAAATACTACAACAACAATAACAACTACAACTATACCTCAATCCCAAGCAAGTTGGGGTTGACTATATGAATCCTCATTGTCCATGTCGATCCATTGAAACTTATCTCAGTCCAGAAAAGTACATCTTTGCTTCTGCATTTAATTGACTTTGAACTCAATTATTGGTTGCGACTTAATATATTATGTCATAACAAAATTTTCAATTATCTATTTAAAAAATTGTTGTTTCATTATCATGGTTATTGTTTCTAGCTTTATATTTTTTTATTCATAATGATTTATGTGCATTTCTACACTAAAGCACATTTTTTTTTTAATTTTTTCATAGAAGCTCCAGCAGACCTGTAACATTTAGCAGTTAAAACTTAGTTAGTGTAACCTAAACATCAGCTTGTGTGAGAAAAAGCAAATGATATATACGAAGCGAACAATGTTCAACTTGAGCTAAGGCTCAGTTGGAAGAAAATAAATAGATATCTTGATTCCTTTTTCTTGATAAAGAAGAGGCCATGTTAAAATTGAGATTGAGATAGAGAATGCAATATTTCGAGAAGATTTAGGGGTGTTGTAACTTTTTTTTTGTTATAATAAGGGAAATACGCAGCCGTTACCCTTTGGGTGCGCACAAAGTAAAGCCCTTTACCCTGCTCTTATGCAATAGTTCACAAACCACACAGGGAGGTAACCCGCATTAGGCAAGCCCGGTGCGAAGAGCTCGACCCAAAAGGCTAACCCCTTGCTTTCGCTGGCAAGGGATTACGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCAATGCTGCGGAAAGGTTGAAAATATAGAAGACTCGAGAATTGACATAATTTTTTCATGTGTTTATTTACTTGTAAAATAATACTATGTGAAGCAGCGGAAAGGGAGCAATAAAACCTTACTCATGTTAGAAAATGATTCTCCTAGCAATAGTTTATGGAGAGTAGAGTCAGTAAACTAGGCGAGCTCATCTGCCTGTTACCTATTTGGCCACAAGGTTCTGAAGTGCAAGCATGCACCAAATTGAATTAACAATTTTATGAAATTACTCATTCAACTTCTATCACATGAAATACTCCACAAGTTTTCTGGTAGACTCATAAAGAAAAATATTGAAAGTTTACATTCAAATAGGAAAAGCTGGATCAGGTTTAACTGTAAACATAAAAAATCCTTCTGCCCTAGCCTATTTGACGAAATATGACTTTAATGGACAAATTTCTGATATGATCAGGATGCTTTAATAAATTTGTGAATTACTACCTCAGATGGGATATTTAACTTCTCTCTAAATACTCGAGGTTCAATTTCAAAGTTAGTCTTATCTTTAACTTACTGATAATTTTTACATAACCATATTGCAAAGAGAGTGACGTAGGTTTGATTTGCAGTTTTGTTCCAAAAAAGGAAAAGAAAGAAGTTTGATTAGCAGCTGTCCCAAGGGGATGGTTGAATGGTAGAGGTCAAGTGTTCAATGTCAGTTGGAACACTCCCTTGAGTCTATCTAGTTAGCCATGGTGACATGTTTACCCAACAATGTTCTTGTAGGTTGTAACAGGTTGCAAAAGTGAATTAGTCAAGTAGTCAAGGCTGGTGCAAATTGGAAACTTGAAAAACTGAAATTAACTTTTTTTAGTTTTCATGTGACCTAAAACCTGTAAAACACAATTTGAAGGTCAAACTCTCTTCCTTGATAGTTGTCTCAGGAAGGAAGAATGAAATGCAAATAATGTGATCCAAAAATATGGTTTTGACTTTTGTCTCACTTTCCCCACCTTTGCTTTTAAGTTGTTCAATATCTTTTAGGTTCGACTCTTCTGAATAACTTGAATCCAACTGTCTTCTTGCTTCGCTTCTATTATTTTTCTAATTGCTTCATCGAATCTAAGTTTGCGGCAGCAATCCTTTTGCAAAAGCACAGCTTCATCTTGTGAATCTTGCCAAAGGAATCTGAAGAATACCACTGTTGGCAAATATTAACACCTTCACTCTGATTGATTCACTTGTATTGGGAATTAAACACTGTCCACCTATCAATATGTTTTGTTAATATTTCCAAAGGAAACCCTCTCGAGTGGTTTTGTAATCGTCTAATTAGGGGCTTTCTATGTTAGCAGCCAGGCATATACTATGATAGTTTTCATTAATCCTGAAGACAGATTAGGAGTCATCATTCTTAAGGAGGCCACACTTTTTGTGTCATTTTACGTAGTCATTGATGGATCATGAAATGCTTTTTGTTGCTCTCCTAGTGAGTTGTATCTTAGTACACATAGCCTGAGGGGATCATAGAACTCGTGGTGACAAGAAAGTCTGTCTAAGAGATTTGATATCCAATTTCGATCAGGGGCTGTTATTACTGTCTGAACAGCTGAGAAATGAGTGAACATGAAGTGGTCTTGGAGTAATCCCAACTACAAATTTTTGGACTCCTAGTGCAGCATCCGGTTGGGCAACTGTCCTCCAAATTTGGTCAACTCCTTGATATAGAACTAGAAAGATATATGATATCTCTTTTTTGTATCGTGACAGACAGCTCTCGAATACTAAACATTGACAAGTACAGAGGTCTTTTCTTTAATTCTGCCCTTTTTAAAATGCCTCAACTAGGTATTCACAAACGTACAGCTTTATTATGCTGCCGACAGATATCTACATCTTTGAGCTTGATAATTTTCTGTCGAACTTATGACGGGACATCTGTTGTCCCTGTTAGGGCAGGAAGCAAATTTACTTGAAGGACTTGGTCCTAAATTTTTCCAATTACTGAGGTTTACCTACACAGGCACACAAACTTACCTGTCTTATTCATAAATTATAGCTTGAATGAAATCCATTTTTTGTTTTATCAAAACATATGAAACATTCCTTTGTTTTCTTAAATAGGTGGGCGATTGTATATCTTGCACAGCTGAAACCACTCATCGTTCCAGTTTTGAGTGAAGGGGAGTGAGTGCATTGTACGTCAAATTTTGTGTTGATAGTTACTGGAGATTGCTGGACCCTAAGTATTCTTCTCTCAGGCTCTGTAAACTTTTCATCTGCTGCGAATAACTTGATAATTTAATTTGTATATTGTTCACCTCTTATAAAATGGTTCTTTATGAACCACCATTATAATATCCGCAGTCAATTCTGGGCTGAAGGTGAGGACTGTATGTATTTTGGATTGGACTCTGAGTTGGAT</genome_strand>
        <mrna_strand>TTTCTCTCCATAACT.......................................................................................................................AGAATAAGAGGCATCTGAGAGATTGTTGGTTAGATCCATACCACAATGGGATTCCTGGTGACAACTCTAATTTTTGTTGCAATTGGTGTTATTGCATCTCTCTGCGCCAGAATCTGCTGCAATAGAGGGCCTTCTACTAATCT..........................................................................................................................................................................................................................................................................................................................................................................................................GTTACACCTAACATTGATTATCACGGCGACAGTGTGCTGTTGGATGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCGATTGTATATCTTGCACAGCTGAAACCACTCATCGTTCCAGTTTTGAGTGAAGGGGAGTGAGTGCATTGTACGTCAAATTTTGTGTTGATAGTTACTGGAGATTGCTGGACCCTAAGTATTCTTCTCTCAGGCTCTGTAAACTTTTCATCTGCTGCGAATAACTTGATAATTTAATTTGTATATTGTTCACCTCTTATAAAATGGTTCTTTATGAACCACCATTATAATATCCGCAGTCAATTCTGGGCTGAAGGTGAGGACTGTATGTATTTTGGATTGGACTCTGAGTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747680" ref_strand="+" ref_description="SGN-E747680 [GI|62751088]">
      <seq>ctcaatccaacttccgatccagcttctctctctgtttctctccataactagaataagaggcatctgagagattgttggttagatccataccacaatgggattcctggtgacaactctaatttttgttgcaattggtgttattgcatctctctgcgccagaatctgctgcaatagagggccttctactaatctgttacacctaacattgattatcacggcgacagtgtgctgttggatgatgtgggcgattgtatatcttgcacagctgaaaccactcatcgttccagttttgagtgaaggggagtgagtgcattgtacgtcaaattttgtgttgatagttactggagattgctggaccctaagtattcttctctcaggctctgtaaacttttcatctgctgcgaataacttgataatttaatttgtatattgttcacctcttataaaatggttctttatgaaccaccattataatatccgcagtcaattctgggctgaaggtgaggactgtatgtattttggattggactctgagttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="40442" stop="35042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40142" g_stop="40094" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40093" i_stop="39975" i_length="119">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39974" g_stop="39832" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="192" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39831" i_stop="39438" i_length="394">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39437" g_stop="39390" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="240" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39389" i_stop="35642" i_length="3748">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35641" g_stop="35342" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="540" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E747680" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40142" e_stop="40094"/>
          <exon e_start="39974" e_stop="39832"/>
          <exon e_start="39437" e_stop="39390"/>
          <exon e_start="35641" e_stop="35342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATCCAACTTCCGATCCAGCTTCTCTCTCTGTTTCTCTCCATAACTGTACGTCTTCGTCTCTGTATATCTCCATTAGTTTTTGCAGTATACATCTAGTTCATATTATGTGCTTTCGTTCAATTTGATTCTTCCATTTTAAAGTCGAACATTTTTTTGTAATGCAGAGAATAAGAGGCATCTGAGAGATTGTTGGTTAGATCCATACCACAATGGGATTCCTGGTGACAACTCTAATTTTTGTTGCAATTGGTGTTATTGCATCTCTCTGCGCCAGAATCTGCTGCAATAGAGGGCCTTCTACTAATCTGTATGTTATTTTTTTGTTTCATATGGTCTAGATTTCTTTAGTATGACGATACTTACTTTTTTTCATGGATTAATTTACTTGGAACTACTCATAACAGACTTTTATATTTTGTTTCCCAAGTTTAGTTTTCTATGTGCATCTGTAATGTATCAGCTAATGCTGTTTGGTACTTTGGTTATTTCCATCTAGAACTGCTAACTCAAAGGTGAATTCTAAGTCTAGATTAATGATTTATTAATTGTATCTGGCAAAAAATAATTGGGATAGTAAAGTAGTTTTTCCTTCTTCATCAATGGCTTGAGATATTTGAGACTGAATCCTTTGTTAATAATGCTGTGGAAGTATTTAAACTTTTTCTCCCCCTTAATGTTGTTGGTTGTGTTTTATAATGCAGGTTACACCTAACATTGATTATCACGGCGACAGTGTGCTGTTGGATGATGTAAGTGTTATATATGGTTGAAATTTCTGTTATACTTGCGAGACAAGATTAGGAGTAGATTAAAGTATTGCACCATGAAATTCTTATACTTGAATATGTTTGGATGCCTTTAAGTAGAGTATGTAATTTCATATTTTGTCCTTTTGAAGTTTTGGTGGATAAGATAGACTCTTAGTTCGAGGCAACATGGGCAGAAAGAAAAGATTTGTCTGAACCACTGATCGGTCACTAATGCTAAAAGCTTTCCAAATCTAGCAATCAATTAAGCATGTCAAAGAAAATTTGTTTCTAACATTTGTTACCTTTGTCAAAAAAAAAAATTGTTTCTAACACAATGGAATATGTCTTATCCAATGGATCATAATATGAAGCATGGTTAACTGATTCTTTTCTAGAAGAATGAAGTTATCACTTTAGTCTTAGCTTTGGCTGAAGATGCACCTGAGTCTCTCATAATAGCAAGGCAATATTGTCAAAGGTGCACTTAAGGCATGGTGATTTCTACAGTTAGGCTTAATAAAAACTATTACTTTGGATTGCTTAGGTAGCGTTTTAAGGAAGATATAGGATGTTAGGAAATGCGGCTCAGAAAAAGTTAATCAACCAGCAGTTTGTAAAAAAATTAGGTGAATTTGGGTGGCTCTTGGCTCTACCTTGAAGAGGACAACACTTAAAAGATAAATATAATAGAAAAATGACGTCTTAATTGATAAAACAAAACATTGCAGATGAACACAAATATTATTAAGAAATACTGTTTTCTTAACTTAATAACTTTGATATTACCAATACTGTTTAAAATGAAGTTATTAATAAGGGATAAGAAATTAGAATTTTGTTTAAGAAATACTACAACAACAATAACAACTACAACTATACCTCAATCCCAAGCAAGTTGGGGTTGACTATATGAATCCTCATTGTCCATGTCGATCCATTGAAACTTATCTCAGTCCAGAAAAGTACATCTTTGCTTCTGCATTTAATTGACTTTGAACTCAATTATTGGTTGCGACTTAATATATTATGTCATAACAAAATTTTCAATTATCTATTTAAAAAATTGTTGTTTCATTATCATGGTTATTGTTTCTAGCTTTATATTTTTTTATTCATAATGATTTATGTGCATTTCTACACTAAAGCACATTTTTTTTTTAATTTTTTCATAGAAGCTCCAGCAGACCTGTAACATTTAGCAGTTAAAACTTAGTTAGTGTAACCTAAACATCAGCTTGTGTGAGAAAAAGCAAATGATATATACGAAGCGAACAATGTTCAACTTGAGCTAAGGCTCAGTTGGAAGAAAATAAATAGATATCTTGATTCCTTTTTCTTGATAAAGAAGAGGCCATGTTAAAATTGAGATTGAGATAGAGAATGCAATATTTCGAGAAGATTTAGGGGTGTTGTAACTTTTTTTTTGTTATAATAAGGGAAATACGCAGCCGTTACCCTTTGGGTGCGCACAAAGTAAAGCCCTTTACCCTGCTCTTATGCAATAGTTCACAAACCACACAGGGAGGTAACCCGCATTAGGCAAGCCCGGTGCGAAGAGCTCGACCCAAAAGGCTAACCCCTTGCTTTCGCTGGCAAGGGATTACGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCAATGCTGCGGAAAGGTTGAAAATATAGAAGACTCGAGAATTGACATAATTTTTTCATGTGTTTATTTACTTGTAAAATAATACTATGTGAAGCAGCGGAAAGGGAGCAATAAAACCTTACTCATGTTAGAAAATGATTCTCCTAGCAATAGTTTATGGAGAGTAGAGTCAGTAAACTAGGCGAGCTCATCTGCCTGTTACCTATTTGGCCACAAGGTTCTGAAGTGCAAGCATGCACCAAATTGAATTAACAATTTTATGAAATTACTCATTCAACTTCTATCACATGAAATACTCCACAAGTTTTCTGGTAGACTCATAAAGAAAAATATTGAAAGTTTACATTCAAATAGGAAAAGCTGGATCAGGTTTAACTGTAAACATAAAAAATCCTTCTGCCCTAGCCTATTTGACGAAATATGACTTTAATGGACAAATTTCTGATATGATCAGGATGCTTTAATAAATTTGTGAATTACTACCTCAGATGGGATATTTAACTTCTCTCTAAATACTCGAGGTTCAATTTCAAAGTTAGTCTTATCTTTAACTTACTGATAATTTTTACATAACCATATTGCAAAGAGAGTGACGTAGGTTTGATTTGCAGTTTTGTTCCAAAAAAGGAAAAGAAAGAAGTTTGATTAGCAGCTGTCCCAAGGGGATGGTTGAATGGTAGAGGTCAAGTGTTCAATGTCAGTTGGAACACTCCCTTGAGTCTATCTAGTTAGCCATGGTGACATGTTTACCCAACAATGTTCTTGTAGGTTGTAACAGGTTGCAAAAGTGAATTAGTCAAGTAGTCAAGGCTGGTGCAAATTGGAAACTTGAAAAACTGAAATTAACTTTTTTTAGTTTTCATGTGACCTAAAACCTGTAAAACACAATTTGAAGGTCAAACTCTCTTCCTTGATAGTTGTCTCAGGAAGGAAGAATGAAATGCAAATAATGTGATCCAAAAATATGGTTTTGACTTTTGTCTCACTTTCCCCACCTTTGCTTTTAAGTTGTTCAATATCTTTTAGGTTCGACTCTTCTGAATAACTTGAATCCAACTGTCTTCTTGCTTCGCTTCTATTATTTTTCTAATTGCTTCATCGAATCTAAGTTTGCGGCAGCAATCCTTTTGCAAAAGCACAGCTTCATCTTGTGAATCTTGCCAAAGGAATCTGAAGAATACCACTGTTGGCAAATATTAACACCTTCACTCTGATTGATTCACTTGTATTGGGAATTAAACACTGTCCACCTATCAATATGTTTTGTTAATATTTCCAAAGGAAACCCTCTCGAGTGGTTTTGTAATCGTCTAATTAGGGGCTTTCTATGTTAGCAGCCAGGCATATACTATGATAGTTTTCATTAATCCTGAAGACAGATTAGGAGTCATCATTCTTAAGGAGGCCACACTTTTTGTGTCATTTTACGTAGTCATTGATGGATCATGAAATGCTTTTTGTTGCTCTCCTAGTGAGTTGTATCTTAGTACACATAGCCTGAGGGGATCATAGAACTCGTGGTGACAAGAAAGTCTGTCTAAGAGATTTGATATCCAATTTCGATCAGGGGCTGTTATTACTGTCTGAACAGCTGAGAAATGAGTGAACATGAAGTGGTCTTGGAGTAATCCCAACTACAAATTTTTGGACTCCTAGTGCAGCATCCGGTTGGGCAACTGTCCTCCAAATTTGGTCAACTCCTTGATATAGAACTAGAAAGATATATGATATCTCTTTTTTGTATCGTGACAGACAGCTCTCGAATACTAAACATTGACAAGTACAGAGGTCTTTTCTTTAATTCTGCCCTTTTTAAAATGCCTCAACTAGGTATTCACAAACGTACAGCTTTATTATGCTGCCGACAGATATCTACATCTTTGAGCTTGATAATTTTCTGTCGAACTTATGACGGGACATCTGTTGTCCCTGTTAGGGCAGGAAGCAAATTTACTTGAAGGACTTGGTCCTAAATTTTTCCAATTACTGAGGTTTACCTACACAGGCACACAAACTTACCTGTCTTATTCATAAATTATAGCTTGAATGAAATCCATTTTTTGTTTTATCAAAACATATGAAACATTCCTTTGTTTTCTTAAATAGGTGGGCGATTGTATATCTTGCACAGCTGAAACCACTCATCGTTCCAGTTTTGAGTGAAGGGGAGTGAGTGCATTGTACGTCAAATTTTGTGTTGATAGTTACTGGAGATTGCTGGACCCTAAGTATTCTTCTCTCAGGCTCTGTAAACTTTTCATCTGCTGCGAATAACTTGATAATTTAATTTGTATATTGTTCACCTCTTATAAAATGGTTCTTTATGAACCACCATTATAATATCCGCAGTCAATTCTGGGCTGAAGGTGAGGACTGTATGTATTTTGGATTGGACTCTGAGTTGGA</genome_strand>
        <mrna_strand>CTCAATCCAACTTCCGATCCAGCTTCTCTCTCTGTTTCTCTCCATAACT.......................................................................................................................AGAATAAGAGGCATCTGAGAGATTGTTGGTTAGATCCATACCACAATGGGATTCCTGGTGACAACTCTAATTTTTGTTGCAATTGGTGTTATTGCATCTCTCTGCGCCAGAATCTGCTGCAATAGAGGGCCTTCTACTAATCT..........................................................................................................................................................................................................................................................................................................................................................................................................GTTACACCTAACATTGATTATCACGGCGACAGTGTGCTGTTGGATGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCGATTGTATATCTTGCACAGCTGAAACCACTCATCGTTCCAGTTTTGAGTGAAGGGGAGTGAGTGCATTGTACGTCAAATTTTGTGTTGATAGTTACTGGAGATTGCTGGACCCTAAGTATTCTTCTCTCAGGCTCTGTAAACTTTTCATCTGCTGCGAATAACTTGATAATTTAATTTGTATATTGTTCACCTCTTATAAAATGGTTCTTTATGAACCACCATTATAATATCCGCAGTCAATTCTGGGCTGAAGGTGAGGACTGTATGTATTTTGGATTGGACTCTGAGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335717" ref_strand="+" ref_description="SGN-E335717 [cTOE-8-B1]">
      <seq>tttctctccataactagaataagaggcatctgagagattgttggttagatccataccacaatgggattcctggtgacaactctaatttttgttgcaattggtgttattgcatctctctgcgccagaatctgctgcaatagagggccttctactaatctgttacacctaacattgattatcacggcgacagtgtgctgttggatgatgtgggcgattgtatatcttgcacagctgaaaccactcatcgttccagttttgagtgaaggggagtgagtgcattgtacgtcaaattttgtgttgatagttactggagattgctggaccctaagtattcttctctcaggctctgtaaacttttcatctgctgcgaataacttgataatttaatttgtatattgttcacctcttataaaatggttctttatgaaccaccattataatatccgcagtcaattctgggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="40274" stop="35085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40108" g_stop="40094" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40093" i_stop="39975" i_length="119">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39974" g_stop="39832" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="158" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39831" i_stop="39438" i_length="394">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39437" g_stop="39390" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="206" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39389" i_stop="35642" i_length="3748">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35641" g_stop="35385" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="463" r_length="257" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E335717" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40108" e_stop="40094"/>
          <exon e_start="39974" e_stop="39832"/>
          <exon e_start="39437" e_stop="39390"/>
          <exon e_start="35641" e_stop="35385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCCATAACTGTACGTCTTCGTCTCTGTATATCTCCATTAGTTTTTGCAGTATACATCTAGTTCATATTATGTGCTTTCGTTCAATTTGATTCTTCCATTTTAAAGTCGAACATTTTTTTGTAATGCAGAGAATAAGAGGCATCTGAGAGATTGTTGGTTAGATCCATACCACAATGGGATTCCTGGTGACAACTCTAATTTTTGTTGCAATTGGTGTTATTGCATCTCTCTGCGCCAGAATCTGCTGCAATAGAGGGCCTTCTACTAATCTGTATGTTATTTTTTTGTTTCATATGGTCTAGATTTCTTTAGTATGACGATACTTACTTTTTTTCATGGATTAATTTACTTGGAACTACTCATAACAGACTTTTATATTTTGTTTCCCAAGTTTAGTTTTCTATGTGCATCTGTAATGTATCAGCTAATGCTGTTTGGTACTTTGGTTATTTCCATCTAGAACTGCTAACTCAAAGGTGAATTCTAAGTCTAGATTAATGATTTATTAATTGTATCTGGCAAAAAATAATTGGGATAGTAAAGTAGTTTTTCCTTCTTCATCAATGGCTTGAGATATTTGAGACTGAATCCTTTGTTAATAATGCTGTGGAAGTATTTAAACTTTTTCTCCCCCTTAATGTTGTTGGTTGTGTTTTATAATGCAGGTTACACCTAACATTGATTATCACGGCGACAGTGTGCTGTTGGATGATGTAAGTGTTATATATGGTTGAAATTTCTGTTATACTTGCGAGACAAGATTAGGAGTAGATTAAAGTATTGCACCATGAAATTCTTATACTTGAATATGTTTGGATGCCTTTAAGTAGAGTATGTAATTTCATATTTTGTCCTTTTGAAGTTTTGGTGGATAAGATAGACTCTTAGTTCGAGGCAACATGGGCAGAAAGAAAAGATTTGTCTGAACCACTGATCGGTCACTAATGCTAAAAGCTTTCCAAATCTAGCAATCAATTAAGCATGTCAAAGAAAATTTGTTTCTAACATTTGTTACCTTTGTCAAAAAAAAAAATTGTTTCTAACACAATGGAATATGTCTTATCCAATGGATCATAATATGAAGCATGGTTAACTGATTCTTTTCTAGAAGAATGAAGTTATCACTTTAGTCTTAGCTTTGGCTGAAGATGCACCTGAGTCTCTCATAATAGCAAGGCAATATTGTCAAAGGTGCACTTAAGGCATGGTGATTTCTACAGTTAGGCTTAATAAAAACTATTACTTTGGATTGCTTAGGTAGCGTTTTAAGGAAGATATAGGATGTTAGGAAATGCGGCTCAGAAAAAGTTAATCAACCAGCAGTTTGTAAAAAAATTAGGTGAATTTGGGTGGCTCTTGGCTCTACCTTGAAGAGGACAACACTTAAAAGATAAATATAATAGAAAAATGACGTCTTAATTGATAAAACAAAACATTGCAGATGAACACAAATATTATTAAGAAATACTGTTTTCTTAACTTAATAACTTTGATATTACCAATACTGTTTAAAATGAAGTTATTAATAAGGGATAAGAAATTAGAATTTTGTTTAAGAAATACTACAACAACAATAACAACTACAACTATACCTCAATCCCAAGCAAGTTGGGGTTGACTATATGAATCCTCATTGTCCATGTCGATCCATTGAAACTTATCTCAGTCCAGAAAAGTACATCTTTGCTTCTGCATTTAATTGACTTTGAACTCAATTATTGGTTGCGACTTAATATATTATGTCATAACAAAATTTTCAATTATCTATTTAAAAAATTGTTGTTTCATTATCATGGTTATTGTTTCTAGCTTTATATTTTTTTATTCATAATGATTTATGTGCATTTCTACACTAAAGCACATTTTTTTTTTAATTTTTTCATAGAAGCTCCAGCAGACCTGTAACATTTAGCAGTTAAAACTTAGTTAGTGTAACCTAAACATCAGCTTGTGTGAGAAAAAGCAAATGATATATACGAAGCGAACAATGTTCAACTTGAGCTAAGGCTCAGTTGGAAGAAAATAAATAGATATCTTGATTCCTTTTTCTTGATAAAGAAGAGGCCATGTTAAAATTGAGATTGAGATAGAGAATGCAATATTTCGAGAAGATTTAGGGGTGTTGTAACTTTTTTTTTGTTATAATAAGGGAAATACGCAGCCGTTACCCTTTGGGTGCGCACAAAGTAAAGCCCTTTACCCTGCTCTTATGCAATAGTTCACAAACCACACAGGGAGGTAACCCGCATTAGGCAAGCCCGGTGCGAAGAGCTCGACCCAAAAGGCTAACCCCTTGCTTTCGCTGGCAAGGGATTACGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCAATGCTGCGGAAAGGTTGAAAATATAGAAGACTCGAGAATTGACATAATTTTTTCATGTGTTTATTTACTTGTAAAATAATACTATGTGAAGCAGCGGAAAGGGAGCAATAAAACCTTACTCATGTTAGAAAATGATTCTCCTAGCAATAGTTTATGGAGAGTAGAGTCAGTAAACTAGGCGAGCTCATCTGCCTGTTACCTATTTGGCCACAAGGTTCTGAAGTGCAAGCATGCACCAAATTGAATTAACAATTTTATGAAATTACTCATTCAACTTCTATCACATGAAATACTCCACAAGTTTTCTGGTAGACTCATAAAGAAAAATATTGAAAGTTTACATTCAAATAGGAAAAGCTGGATCAGGTTTAACTGTAAACATAAAAAATCCTTCTGCCCTAGCCTATTTGACGAAATATGACTTTAATGGACAAATTTCTGATATGATCAGGATGCTTTAATAAATTTGTGAATTACTACCTCAGATGGGATATTTAACTTCTCTCTAAATACTCGAGGTTCAATTTCAAAGTTAGTCTTATCTTTAACTTACTGATAATTTTTACATAACCATATTGCAAAGAGAGTGACGTAGGTTTGATTTGCAGTTTTGTTCCAAAAAAGGAAAAGAAAGAAGTTTGATTAGCAGCTGTCCCAAGGGGATGGTTGAATGGTAGAGGTCAAGTGTTCAATGTCAGTTGGAACACTCCCTTGAGTCTATCTAGTTAGCCATGGTGACATGTTTACCCAACAATGTTCTTGTAGGTTGTAACAGGTTGCAAAAGTGAATTAGTCAAGTAGTCAAGGCTGGTGCAAATTGGAAACTTGAAAAACTGAAATTAACTTTTTTTAGTTTTCATGTGACCTAAAACCTGTAAAACACAATTTGAAGGTCAAACTCTCTTCCTTGATAGTTGTCTCAGGAAGGAAGAATGAAATGCAAATAATGTGATCCAAAAATATGGTTTTGACTTTTGTCTCACTTTCCCCACCTTTGCTTTTAAGTTGTTCAATATCTTTTAGGTTCGACTCTTCTGAATAACTTGAATCCAACTGTCTTCTTGCTTCGCTTCTATTATTTTTCTAATTGCTTCATCGAATCTAAGTTTGCGGCAGCAATCCTTTTGCAAAAGCACAGCTTCATCTTGTGAATCTTGCCAAAGGAATCTGAAGAATACCACTGTTGGCAAATATTAACACCTTCACTCTGATTGATTCACTTGTATTGGGAATTAAACACTGTCCACCTATCAATATGTTTTGTTAATATTTCCAAAGGAAACCCTCTCGAGTGGTTTTGTAATCGTCTAATTAGGGGCTTTCTATGTTAGCAGCCAGGCATATACTATGATAGTTTTCATTAATCCTGAAGACAGATTAGGAGTCATCATTCTTAAGGAGGCCACACTTTTTGTGTCATTTTACGTAGTCATTGATGGATCATGAAATGCTTTTTGTTGCTCTCCTAGTGAGTTGTATCTTAGTACACATAGCCTGAGGGGATCATAGAACTCGTGGTGACAAGAAAGTCTGTCTAAGAGATTTGATATCCAATTTCGATCAGGGGCTGTTATTACTGTCTGAACAGCTGAGAAATGAGTGAACATGAAGTGGTCTTGGAGTAATCCCAACTACAAATTTTTGGACTCCTAGTGCAGCATCCGGTTGGGCAACTGTCCTCCAAATTTGGTCAACTCCTTGATATAGAACTAGAAAGATATATGATATCTCTTTTTTGTATCGTGACAGACAGCTCTCGAATACTAAACATTGACAAGTACAGAGGTCTTTTCTTTAATTCTGCCCTTTTTAAAATGCCTCAACTAGGTATTCACAAACGTACAGCTTTATTATGCTGCCGACAGATATCTACATCTTTGAGCTTGATAATTTTCTGTCGAACTTATGACGGGACATCTGTTGTCCCTGTTAGGGCAGGAAGCAAATTTACTTGAAGGACTTGGTCCTAAATTTTTCCAATTACTGAGGTTTACCTACACAGGCACACAAACTTACCTGTCTTATTCATAAATTATAGCTTGAATGAAATCCATTTTTTGTTTTATCAAAACATATGAAACATTCCTTTGTTTTCTTAAATAGGTGGGCGATTGTATATCTTGCACAGCTGAAACCACTCATCGTTCCAGTTTTGAGTGAAGGGGAGTGAGTGCATTGTACGTCAAATTTTGTGTTGATAGTTACTGGAGATTGCTGGACCCTAAGTATTCTTCTCTCAGGCTCTGTAAACTTTTCATCTGCTGCGAATAACTTGATAATTTAATTTGTATATTGTTCACCTCTTATAAAATGGTTCTTTATGAACCACCATTATAATATCCGCAGTCAATTCTGGGCTG</genome_strand>
        <mrna_strand>TTTCTCTCCATAACT.......................................................................................................................AGAATAAGAGGCATCTGAGAGATTGTTGGTTAGATCCATACCACAATGGGATTCCTGGTGACAACTCTAATTTTTGTTGCAATTGGTGTTATTGCATCTCTCTGCGCCAGAATCTGCTGCAATAGAGGGCCTTCTACTAATCT..........................................................................................................................................................................................................................................................................................................................................................................................................GTTACACCTAACATTGATTATCACGGCGACAGTGTGCTGTTGGATGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCGATTGTATATCTTGCACAGCTGAAACCACTCATCGTTCCAGTTTTGAGTGAAGGGGAGTGAGTGCATTGTACGTCAAATTTTGTGTTGATAGTTACTGGAGATTGCTGGACCCTAAGTATTCTTCTCTCAGGCTCTGTAAACTTTTCATCTGCTGCGAATAACTTGATAATTTAATTTGTATATTGTTCACCTCTTATAAAATGGTTCTTTATGAACCACCATTATAATATCCGCAGTCAATTCTGGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378085" ref_strand="+" ref_description="SGN-E378085 [TUS-21-B12]">
      <seq>ttaaaggctattttggaagaattcaaagtagatttggctcgggccaaaaaagggaagcctccggtgaaaggcgccgatggcaaggcgaagaggaacttgacccctcaagcattacagataaaaatagaccaaactaatgtgaagattgataacatagagaggcaaatagatactaaagaagagttgaaaactgtggctttgggcacatcaaaaatcaactatttggatcctaggattactgtggcatggtgtaagcgccatgaggttcccattgaaaagatgttcaacaagtctcttctagcaaagtttgcctgggcgatggatgttgaaccttccttcacattctaaatttttggtggttgttatagtgtaggacatctcttcaaagtcaagtctccctcctaatacccaattgttcacatttcccccttcctccctcctggaaagagaataggaaaaaagttctattatttttgcacttaaaaaagaagaaaaaaaaagagatctttgatcgttgtctgacaatatttaaacttgtttaccctgacaaattcctgttgtaatttgagcttctgaatttatggggtaagttttccttanaaaaaaaaaaaaaaaaaaaaaaaaataaaaaaaaaaaaacaaaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="42546" stop="41153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42442" g_stop="42437" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42436" i_stop="42245" i_length="192">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42244" g_stop="42141" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="110" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42140" i_stop="42062" i_length="79">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42061" g_stop="41893" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="279" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41892" i_stop="41773" i_length="120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41772" g_stop="41467" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="585" r_length="306" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="601" polyA_stop="639"/>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E378085" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42442" e_stop="42437"/>
          <exon e_start="42244" e_stop="42141"/>
          <exon e_start="42061" e_stop="41893"/>
          <exon e_start="41772" e_stop="41467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGGTGATTACTTTTTGTTATCAGTGTTCATTCTCTGTAGTTCCATTTCTGTCTGATAAGTTTCTATAATGTGAGTGGCTAGTTTTTATTTGTCATCAAAATAGAAGAGGATTGCTTATTGATGATATTTTACATAAAGTTGACGTGTATTCAAAATACTTGCATTTCCTTAGGTTGTGATTGTGTTTTTATTAGGCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGCGTACAATTGCTGTCCTTGACTCGAGCCTTTCTTCCATTCTTTGTTTTAGTTGCTGACATATAAGTGTAATTGTTTGCAGATTACAGATAAAAATAGACCAAACTAATGTGAAGATTGATAACATAGAGAGGCAAATAGATACTAAAGAAGAGTTGAAAACTGTGGCTTTGGGCACATCAAAAATCAACTATTTGGATCCTAGGATTACTGTGGCATGGTGTAAGCGCCATGAGGTTCCCATTGAAAAGGTATATGCCTCGTTTACAATGTCTTATGGCTAAGTGTACTTCCATGAATTTCATCTCCTCTTATTTCTAATTGACCTCATGCATTGTGGTTACGTTTTGATCCTTCTTTATCCCTTGCAGATGTTCAACAAGTCTCTTCTAGCAAAGTTTGCCTGGGCGATGGATGTTGAACCTTCCTTCACATTCTAAATTTTTGGTGGTTGTTATAGTGTAGGACATCTCTTCAAAGTCAAGTCTCCCTCCTAATACCCAATTGTTCACATTTCCCCCTTCCTCCCTCCTGGAAAGAGAATAGGAAAAAAGTTCTATTATTTTTGCACTTAAAAAAGAAGAAAAAAAAAGAGATCTTTGATCGTTGTCTGACAATATTTAAACTTGTTTACCCTGACAAATTCCTGTTGTAATTTGAGCTTCTGAATTTATGGG</genome_strand>
        <mrna_strand>TTAAAG................................................................................................................................................................................................GCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGC...............................................................................ATTACAGATAAAAATAGACCAAACTAATGTGAAGATTGATAACATAGAGAGGCAAATAGATACTAAAGAAGAGTTGAAAACTGTGGCTTTGGGCACATCAAAAATCAACTATTTGGATCCTAGGATTACTGTGGCATGGTGTAAGCGCCATGAGGTTCCCATTGAAAAG........................................................................................................................ATGTTCAACAAGTCTCTTCTAGCAAAGTTTGCCTGGGCGATGGATGTTGAACCTTCCTTCACATTCTAAATTTTTGGTGGTTGTTATAGTGTAGGACATCTCTTCAAAGTCAAGTCTCCCTCCTAATACCCAATTGTTCACATTTCCCCCTTCCTCCCTCCTGGAAAGAGAATAGGAAAAAAGTTCTATTATTTTTGCACTTAAAAAAGAAGAAAAAAAAAGAGATCTTTGATCGTTGTCTGACAATATTTAAACTTGTTTACCCTGACAAATTCCTGTTGTAATTTGAGCTTCTGAATTTATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242257" ref_strand="+" ref_description="SGN-E242257 [cLED-37-J20]">
      <seq>ttaaaggctattttggaagaattcaaagtagatttggctcgggccaaaaaagggaagcctccggtgaaaggcgccgatggcaaggcgaagaggaacttgacccctcaagcattacagataaaaatagaccaaactaatgtgaagattgataacatagagaggcaaatagatactaaagaagagttgaaaactgtggctttgggcacatcaaaaatcaactatttggatcctaggattactgtggcatggtgtaagcgccatgaggttcccattgaaaagatgttcaacaagtctcttctagcaaagtttgcctgggcgatggatgttgaaccttccttcacattctaaatttttggtggttgttatagtgtaggacatctcttcaaagtcaagtctccctcctaatacccaattgttcacatttcccccttcctccctcctggaaagagaataggaaaaaagttctattatttttgcacttaaaaaagaagaaaaaaaaagagatctttgatcgttgtctgacaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="42546" stop="41225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42442" g_stop="42437" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42436" i_stop="42245" i_length="192">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42244" g_stop="42141" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="110" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42140" i_stop="42062" i_length="79">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42061" g_stop="41893" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="279" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41892" i_stop="41773" i_length="120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41772" g_stop="41525" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="527" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E242257" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42442" e_stop="42437"/>
          <exon e_start="42244" e_stop="42141"/>
          <exon e_start="42061" e_stop="41893"/>
          <exon e_start="41772" e_stop="41525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGGTGATTACTTTTTGTTATCAGTGTTCATTCTCTGTAGTTCCATTTCTGTCTGATAAGTTTCTATAATGTGAGTGGCTAGTTTTTATTTGTCATCAAAATAGAAGAGGATTGCTTATTGATGATATTTTACATAAAGTTGACGTGTATTCAAAATACTTGCATTTCCTTAGGTTGTGATTGTGTTTTTATTAGGCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGCGTACAATTGCTGTCCTTGACTCGAGCCTTTCTTCCATTCTTTGTTTTAGTTGCTGACATATAAGTGTAATTGTTTGCAGATTACAGATAAAAATAGACCAAACTAATGTGAAGATTGATAACATAGAGAGGCAAATAGATACTAAAGAAGAGTTGAAAACTGTGGCTTTGGGCACATCAAAAATCAACTATTTGGATCCTAGGATTACTGTGGCATGGTGTAAGCGCCATGAGGTTCCCATTGAAAAGGTATATGCCTCGTTTACAATGTCTTATGGCTAAGTGTACTTCCATGAATTTCATCTCCTCTTATTTCTAATTGACCTCATGCATTGTGGTTACGTTTTGATCCTTCTTTATCCCTTGCAGATGTTCAACAAGTCTCTTCTAGCAAAGTTTGCCTGGGCGATGGATGTTGAACCTTCCTTCACATTCTAAATTTTTGGTGGTTGTTATAGTGTAGGACATCTCTTCAAAGTCAAGTCTCCCTCCTAATACCCAATTGTTCACATTTCCCCCTTCCTCCCTCCTGGAAAGAGAATAGGAAAAAAGTTCTATTATTTTTGCACTTAAAAAAGAAGAAAAAAAAAGAGATCTTTGATCGTTGTCTGACAATA</genome_strand>
        <mrna_strand>TTAAAG................................................................................................................................................................................................GCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGC...............................................................................ATTACAGATAAAAATAGACCAAACTAATGTGAAGATTGATAACATAGAGAGGCAAATAGATACTAAAGAAGAGTTGAAAACTGTGGCTTTGGGCACATCAAAAATCAACTATTTGGATCCTAGGATTACTGTGGCATGGTGTAAGCGCCATGAGGTTCCCATTGAAAAG........................................................................................................................ATGTTCAACAAGTCTCTTCTAGCAAAGTTTGCCTGGGCGATGGATGTTGAACCTTCCTTCACATTCTAAATTTTTGGTGGTTGTTATAGTGTAGGACATCTCTTCAAAGTCAAGTCTCCCTCCTAATACCCAATTGTTCACATTTCCCCCTTCCTCCCTCCTGGAAAGAGAATAGGAAAAAAGTTCTATTATTTTTGCACTTAAAAAAGAAGAAAAAAAAAGAGATCTTTGATCGTTGTCTGACAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746938" ref_strand="+" ref_description="SGN-E746938 [GI|47104344]">
      <seq>cgaacttcctcatccccattctcctcctccttccgatctctttctccggccaaattcatctccataaaggagaacattatatgacagtatagcatagagaaagatcatggctgtagaggcttttgccaaaacaaatttgatggaagatatggatgatgacgatgacatgcctttagttttcaaacgaagtagtaccacatcaaagcaaaatcagtccaattcatcatctcagaagcaggatggaagatcggggcggcaagttcctgatatacgttcacctaatggccagagctctagtactcataaagttaagacagtcacctcttctaaggcatctccagcagtttcacctttaactagtccaaaagcgtcgcctctgtcaagcaggacatctcctgcaccaaactcaaggccgtcatcttctgcaggtaatcaggcaaaaaatgttaatcaacaatccaatgttactcctaaggagtcgaaacaagctgttgaaccaaaatctgaacctaatgatgaagctgaggattctgatgatgataaactattgagttctagggtcccttctgggttatctaagagcacttctgttcatgccaagaaagtgctttgtacttcaacatcagttcagaagtctagacctcccaaaaaagaggattcagatgatgaaactcccttagcatcaaggtttccaatgaaatccaatgcaggggcttccactagcaagttttctagttctgaagaagttaagcctaagattcgtcagaatggtttgccatctgcgacagttttaagtaagagaccccctggtgaggtcaagtctgctgctcaggcttcagttaaaaagcctagactttctgatgcgtccacacctgtttctagtaagcaaccgcctttcaaaactgaaaagaagacagaggacgatgacgacgatgttcctatatctcagaggataaaaaaggcagtagattcagcttcagcttcagctagtaaagtgtcatatgtgaagaaagcaactaaagttgtttcgtcatcgatgaagaaaacaaagaagaagttgaaaaaacccaagtactctaagtcgtcaaaactgcagccaagctctggtgatgggcaaaaatggactacactggaacacaatggtgtgatttttccacctccatacaaacctcatggggttaagatgctctacaagggaaagcccgtggatcttactccagagcaggaagaggtcgcaacaatgtatgccgtgatgttagacactgaatacatgactaaagagcagttcaaagagaatttcatgaatgactggagaaaaatacttggaaaaaaccatgtcattcaaaagttagaagagtgtgattttaccccaatatatgagtggcatcagagtgagaaggagaagaagaagcaaatgagttcagaagagaagaaggcattgagagaagagaaacttaagcaagaagagaaatacatgtgggctattgtggatggtgttaaagagaaggttgggaactttcgggttgaaccacctggattgttccgaggccgtggggaacatccaaagatgggaaagctaaagagacggatccggccaaatgatatcacaataaatattggaaagggtgttccagtaccggagtgccccatccctggccaaaggtggaaggaagtaaggcatgacaacacagtaacatggttagctttctggaacgaccctattaatccaagagaattcaaatacgttttcctagcagccagtagttccttgaaagggcaaagtgataaggagaagtatgagaaagctaggcgtttgaaggattacatagaaggcattagatctgcatatacaaaagattttgcaagtaaagatcctgtgaagcgtcagattgcagttgcaacttatcttatcgataaattagctctgagggcagggaatgagaaggatgatgacgaagctgatacagttggttgctgtactttgaaagtagagaatgtagagccagtacctccaaatattttgaagttcgattttcttggtaaagattctatcaggtaccaaaatgaggtggctgtgtatgagcctgtttttaaagctattcaacagttccgaagtggaaaaaagggcagtgacgatctttttgacaagcttgatacgagtaagcttaatgcccatctaaaggaactcatgccagggctcacagcaaaagtatttcgtacatataatgcatcttttacattggagcagcaattgactaagctcacacaagggggggagcttgctgataaaattgcggtatataatgtggcaaataaagaggttgcaataatttgtaatcaccagcgtactgtctcgaagtcccatagcgtgcaaatttcaaggttgaataacaagatagatgagttaaaggctattttggaagaattcaaagtagatttggctcgggccaaaaaagggaagcctccggtgaaaggcgccgatggcaaggcgaagaggaacttgacccctcaagcattacagataaaaatagaccaaactaatgtgaagattgataacatagagaggcaaatagatactaaagaagagttgaaaactgtggctttgggcacatcaaaaatcaactatttggatcctaggattactgtggcatggtgtaagcgccatgaggttcccattgaaaagatgttcaacaagtctcttctagcaaagtttgcctgggcgatggatgttgaaccttccttcacattctaaatttttggtggttgttatagtgtaggacatctcttcaaagtcaagtctccctcctaatacccaattgttcacatttcccccttcctccctcctggaaagagaataggaaaaaagttctattatttttgcacttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="51672" stop="41262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51372" g_stop="51310" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51309" i_stop="50342" i_length="968">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50341" g_stop="49174" g_length="1168"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="1231" r_length="1168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49173" i_stop="49096" i_length="78">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49095" g_stop="48901" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1232" r_stop="1426" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48900" i_stop="47592" i_length="1309">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47591" g_stop="47511" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1427" r_stop="1507" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47510" i_stop="45971" i_length="1540">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45970" g_stop="45911" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1508" r_stop="1567" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45910" i_stop="45779" i_length="132">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45778" g_stop="45684" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1568" r_stop="1662" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45683" i_stop="45530" i_length="154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45529" g_stop="45373" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1663" r_stop="1819" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45372" i_stop="45285" i_length="88">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="45284" g_stop="45159" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1820" r_stop="1945" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="45158" i_stop="44770" i_length="389">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="44769" g_stop="44689" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1946" r_stop="2026" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="44688" i_stop="44576" i_length="113">
            <donor d_prob="0.564" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="44575" g_stop="44485" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="2027" r_stop="2117" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="44484" i_stop="44398" i_length="87">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="44397" g_stop="44264" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="2118" r_stop="2251" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="44263" i_stop="42682" i_length="1582">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="42681" g_stop="42613" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="2252" r_stop="2320" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="42612" i_stop="42527" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="42526" g_stop="42437" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="2321" r_stop="2410" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="42436" i_stop="42245" i_length="192">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="42244" g_stop="42141" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="2411" r_stop="2514" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="42140" i_stop="42062" i_length="79">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="42061" g_stop="41893" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="2515" r_stop="2683" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="41892" i_stop="41773" i_length="120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="41772" g_stop="41563" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="2684" r_stop="2893" r_length="210" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E746938" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2893</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51372" e_stop="51310"/>
          <exon e_start="50341" e_stop="49174"/>
          <exon e_start="49095" e_stop="48901"/>
          <exon e_start="47591" e_stop="47511"/>
          <exon e_start="45970" e_stop="45911"/>
          <exon e_start="45778" e_stop="45684"/>
          <exon e_start="45529" e_stop="45373"/>
          <exon e_start="45284" e_stop="45159"/>
          <exon e_start="44769" e_stop="44689"/>
          <exon e_start="44575" e_stop="44485"/>
          <exon e_start="44397" e_stop="44264"/>
          <exon e_start="42681" e_stop="42613"/>
          <exon e_start="42526" e_stop="42437"/>
          <exon e_start="42244" e_stop="42141"/>
          <exon e_start="42061" e_stop="41893"/>
          <exon e_start="41772" e_stop="41563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACTTCCTCATCCCCATTCTCCTCCTCCTTCCGATCTCTTTCTCCGGCCAAATTCATCTCCGTACGTTCACCTCTCTTTCTCTCTCTCTCTCTCTCTCTCCTGCTCTATATCTTTCCAATTTCATCTATCTGAAACAAAAACCCTAATCCCCCCCTTTTTTTTTCATGTAATAATTAAAATGTGAAATTGTTCTAATGATTTATCTCTTATCTCTCCACTTCTTAATGAAAGCTTAAGTTCCGATTTGTTAATTCTTATAACTATTTTTATATGCTTACTAGTTAATTTGTACATTTTTGGTTTTTTTTTAAACCATCTTAAACCACTTCCTTAAAGCTCCGATGGTCGACTAATTTGTCTTTTCTAATGCTAATCAGTTTTTATTACATTTTATCTGAAAATTTGATTTTTTTTAAATCTTTAATGTGCATGTATATTTCAAGCTCACAGTTACCAGGAGCCTACTGTTTAATTTGCTTCTAGATTTGGGGTTATAGTATGTGTTGGAATAGAAAGGAGAAATTTCCATATGAAGAAATTTTATTTAGCTTGCTCTGCGGATTTTATGTTTCATACTGCATACAAAATGAATGGAGAGGGGAACGGATCCTGTCTTATTTTTGTGTTTGTGTGATGGGGAGAGAGATGCCCTTTAAAGAAGCATTGAGTCCTTGAGGATAAGTGCCAAGTTAATGAGAAATAAACTTACTTTTTGGAAAGAGAAAACATAGATGAAGTAAATTTAAAAAGAAACTTGAACTGCATTTTAAAAAATGCTGGAATTGTGTTTGGCTTGATAGGTTATAATACCTATACTTAAAGTACAACTGGACTAGTTGTTAAGAGGAAGAAACTAGATTTATGTTTTCTTGCCATATGTTGGGGTTATAGATTCGTTTCTCCCTTGTGGCTTTCTGTTACAGCCTTGTTGCAGTGATATACTTCAATTTTTTGTTCTCTAGGTGTCCTTTGCTTTTTCCTTTTTATTGTATTTTAACTGCCCTATAATTATGAAAAAATGTTTACAGATAAAGGAGAACATTATATGACAGTATAGCATAGAGAAAGATCATGGCTGTAGAGGCTTTTGCCAAAACAAATTTGATGGAAGATATGGATGATGACGATGACATGCCTTTAGTTTTCAAACGAAGTAGTACCACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGAAGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCATGCCAAGAAAGTGCTTTGTACTTCAACATCAGTTCAGAAGTCTAGACCTCCCAAAAAAGAGGATTCAGATGATGAAACTCCCTTAGCATCAAGGTTTCCAATGAAATCCAATGCAGGGGCTTCCACTAGCAAGTTTTCTAGTTCTGAAGAAGTTAAGCCTAAGATTCGTCAGAATGGTTTGCCATCTGCGACAGTTTTAAGTAAGAGACCCCCTGGTGAGGTCAAGTCTGCTGCTCAGGCTTCAGTTAAAAAGCCTAGACTTTCTGATGCGTCCACACCTGTTTCTAGTAAGCAACCGCCTTTCAAAACTGAAAAGAAGACAGAGGACGATGACGACGATGTTCCTATATCTCAGAGGATAAAAAAGGCAGTAGATTCAGCTTCAGCTTCAGCTAGTAAAGTGTCATATGTGAAGAAAGCAACTAAAGTTGTTTCGTCATCGATGAAGAAAACAAAGAAGAAGTTGAAAAAACCCAAGTACTCTAAGTCGTCAAAACTGCAGCCAAGCTCTGGTGATGGGCAAAAATGGACTACACTGGAACACAATGGTGTGATTTTTCCACCTCCATACAAACCTCATGGGGTTAAGATGCTCTACAAGGGAAAGCCCGTGGATCTTACTCCAGAGCAGGAAGAGGTCTCAATCTGTCTCTGATTGTATGTGTCTCATTCATGTCTTTGTGATTTTATTCTTAGTACAGCAATTTCTCTGCAGGTCGCAACAATGTATGCCGTGATGTTAGACACTGAATACATGACTAAAGAGCAGTTCAAAGAGAATTTCATGAATGACTGGAGAAAAATACTTGGAAAAAACCATGTCATTCAAAAGTTAGAAGAGTGTGATTTTACCCCAATATATGAGTGGCATCAGAGTGAGAAGGAGAAGAAGAAGCAAATGAGTTCAGAAGTAAGTGAATTAATAAATATTTAAGTTACAAAATATGGTAATTTGTAGTTATCTTGTCACTTAAACCGTGGTTAATTTCATTTTGCTTATACTTTTCCATCTTCTAATCACTTGTTAGCTTTCTTTAGGAGTTGCCGAACTGTTAACTCTAAAAAAATTTCTGATCTTTCACTTGTGACGAAGTTCTGAATTTGTTTGGCAGTTGTATGATCTCACTTGGTAGAGCCAATATATCCCAGTCACCTTTGGACTAAAAAACATCTCTGCTTACTGTGTAGAAATTCATTGATTTCCTGTGTGGGGGATATGTTACTTGCTAATCTTATGGTAGTTAGTTGTTTGGCAGGTGATCTTTTGTGTAGTCATTTGATGCATACATTTGTCTGACCAGCATGAAACTGGCATTTCTGTCAACCTTATAAAATAGATTTAGCTACATTTTCTTAATTGAGAAGATTTGCAGAGACTACTTCATAGGATATTATCTAAGACATCCTTACAATGCAAGAGATTCAGCCACAGTATTGTTTTATATACAACCTCTACCTCTTAGTATATGTTGCTTCGACTCGCCAATAGTGTTGCTGCACTAGTGTCCCACCCTTCAAATATGTACTGCTTTTGAAAGATCCGACATGTACATGTAAACATTTTTGAAGAGTCCGAGTGACATAGCTCTTCAGTGATGTTAATGCTGGATAATCATAGAACTTCATTTTTCATAGCAAGTGGATTTAACCATTACGTTTAGTAGAAGTCTAGTTAGCAATTTTATGAGGGAACAAGTTCCCTTCATTTTGATGGTGGAAGTGTTTTTAGCTCACTTAAAAAGGACTCATTTGGGAAATGATTTGTCCTAATTTTTTTTGTTTTCTCTGGCTGCTTGTCCCTTTCTCCTTTTGTTTTTAATTCTTTTTTCTTCATGGATGGATCGGGGGGGGGGGCACTTTCCAGAATATTGGTTTTGTTTTCCACTGTTGCCGTCAATTAGTTGAAGCTTGGATTGAATTTGGTTGATGAATATATCTGTGTATGATGATAGCAACCACTTTCAGCTTGACAACATTCTTAAACAAACTTGCATGTAGAGTTTCAAAAAAAATATGTCTTCCACTATCGCAAACTGATCACTTATAAGATGTTCGGCATTTTGTCAAATTGGCTGTTATTTTACCTAGTCTCTGACATTTTTGATTCTCAGTCTGATCAAGATGGGACCTATGTTTGTGGTTTAATCTAATAGCACAGTACATAAAGCTCGTAGATGCTTCAAGGTTTTCATCTAAAACATTGCTTACCTATTTTGCAGGAGAAGAAGGCATTGAGAGAAGAGAAACTTAAGCAAGAAGAGAAATACATGTGGGCTATTGTGGATGGTGTTAAAGAGAAGGTTTGGTTCTGTTTAGCTTTAGCTTTTAGCTTTCATACATGGTACTTTAAGAGAAATTATGTTGTGCTATCTTCTAAATTTATCCCAATGGGATTATAAGATGGTCTTACATCTTTTTTCTCTTAAAAAAGGTCTTATGTCTTCTTTTCTAGGGGATGTTTCTTCTGTCTTTTTCAACATCATCTGCTGTTATTGTGGTAATTTCATCTTATTCACAATGCATTTATCCAGCTAGCACAATTTTTTGGTTGGAGTTGTCCAAAATTCTTTTGTGTTTCATTTTTCTAATCTGGTGCTATTCTTGTAATGATTTCCTCTTGACTGATCTTAAACAACATTGGGGAGCTTTATTTCCTTTATGGCTGTGAATAGTTTTTAGAGAACATATTCTCTTCATCTTTGGAATTTACTTTCCTCTGATTAAAGATTCTTTTTCTTATTGGGAGTAATTAAGTTCTTTTTAAAATTGCATTTAAATGGTGTTAAAAGGTTTTCAAAGTAGATTTTTATGAATACCTAAATGTATTTCCCTGTTATATTTCCCTTCCACGAACATTCCATTTTCAGTTTCTGTAATTCTGTTGAGATTTTTGATAGGGCCTGATGTGTTTTTTGCATCTTAATAGTGATTGTTCGAATTGAACCGTACTTCCTGCTCTTATTTGATGGTTGGTTTTCATGGGATGACTATTCTAGGCAGAATTCATCAGCTGTAAAGAGAAAAAAATTGTCTTCCCATTGTCATGTATTGCTGAAGTACATGGACTTGATTTAAGAAAGAAAATAGAAGTGGAAACATTATCAAAAAGATAAGTGGAAAGACGAGCAAAAAGAGTTAGAATGTTCATTCCTGAGTAAGAACAAGGAATGAGGTTCATTAACTTGGATGAAAGGGCTTTCCCTAGAATGAAATGCCCTCTTTTTTACAACTCCAAATTGAAGAATGGACGTAACCGAATGATGGTTTGTTGAATCTTACGTTAGAAATATCTCTTCTTTTATATGTATGTGTGGGGGAAGAGAGGATAGTCTTGTTTTTGGAACAGAAGGCTTCTAGCTCTGGTCTGATGGAGCAAGTTTTGTTTGTTATTGTTAGTGATTTGTGTACTTCTGAGCTCTTGGGGAGTTGGATCGAATTTGCAGCCGTGTTGATAGGTGACGATCTCGAAAATAAATTGATATAATGAAGATGTTGTAATCCATTGTTACATATTGTTTTCACATGTGTTTGCTGATTGCTTCATAGTCCTTTTCTGGATGTTTCTTTGTTTTCATTATTTAGCTGTTTCTTGTGCCATCAGTACATCCTCTTTTTGGTATTTTTTTGTTTCTTAGCCATATGATATTGAGCCCCCTAGCTTTATCTTAACTCTCAAACTTGAGCTTCCCCTTCCTTTTGGTGATGTGCCAACATGGTGTTCTTTATCGTGTTTAACCTACCTATGTATCCACCCCTAAAATCAGAAAGGCCCATAGTATTCGGAGCATGGAAAACTTATAAACCAACTGCGAAATGGTCTGACCATTTCGTTATGTGCAGGTTGGGAACTTTCGGGTTGAACCACCTGGATTGTTCCGAGGCCGTGGGGAACATCCAAAGGTATGTTGGCCTTCTATTTATTGGGTTAAACTGCCAAGAACATTCTACTATGTGCAGAATGGTGTATTATTTATGTTTAGGTACTTCCATGTTTCGCTGTGGTATTGATGGATGTTGCTTTGAATGGTATAGATGGGAAAGCTAAAGAGACGGATCCGGCCAAATGATATCACAATAAATATTGGAAAGGGTGTTCCAGTACCGGAGTGCCCCATCCCTGGCCAAAGGTTCTCTTCATTTTCTCTGTTATCCTTTTGAAAGAATTGTCTATCCTTTGGAGGGTGGTAAAGGAAGTAAGAAATATACTTTTTGCACCATATACAAGGTAAAAAGCTAGAGTTTCACCTTCATTTATTTTCCTTCCCCTTGTTGGCTTGGCAGGTGGAAGGAAGTAAGGCATGACAACACAGTAACATGGTTAGCTTTCTGGAACGACCCTATTAATCCAAGAGAATTCAAATACGTTTTCCTAGCAGCCAGTAGTTCCTTGAAAGGGCAAAGTGATAAGGAGAAGTATGAGAAAGCTAGGCGTTTGAAGGTACAATGAAGCAATTGGCAAGTTGATTTTTTTTTTTGTACTGGTTGCACATGATGATTGGTGGCTATAAACTGTCTCTCGGTTGCAGGATTACATAGAAGGCATTAGATCTGCATATACAAAAGATTTTGCAAGTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAGGTATCAGGAACACTAGTTTATTTTTATTTTTCCTGGATACTTAACTAGGGGCAGCGTAGATCTCAAAAGAGTCTGAAAATTCCAAAACTGGTTGTCAATGCTGGTTTAGTATCTCTTTCAAAAATATTTTTATTAGCATAGAAGCAGGAAGTTATGGCAATATATGTTGCTCCTCGCTTTCCAATTCATAAGTTTACCAAGAGGTATAAAACCATAAAGCAAAAAATAATTTAAGCAGAGATCAATTTATCCAAAAAAACTGAAGGTGAGAGATCAGTTTTCCAGTTTTTTATATTTTTTTTGTATGAAGAACCCATGCTTTTGCCTGCAGAGGCATGGGACAATGCAAAGGTTGCGCAAGTGTTCTTAGTTATATCAATGTGATGCAGGATGATGACGAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAGGTATTGTGGTTTTAAAAGCTAAATTGGAAGAGCTCTCGGAAATTTACTCCTCTACAGGTTCTTAGTTTTGTGCTATTAATTGCAATGCATATAATTGACTTTGCTTTCTTCAGTTCGATTTTCTTGGTAAAGATTCTATCAGGTACCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTTAAAGCTATTCAACAGTTCCGAAGTGGTTAGTAAATGCTGCTTTTGTGCTAGAATATGTGCTTTTTTTAAAAAAAAATCCGTTCTTGAAATACATGGATACACTTGATTTCAGGAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAAGTAAGTTGCTTTCAGAGACTAGACGTTTTTTTTGACTACTGTGTTACCCGTGACTAAGCTGCTTGTCAACCGGAGCTAGTTAGGGTTGTGAAGATTCATTATAAGTTGACGAGTTTTTCATTGGCCATCAACTTACTACAACCTTCCCACACATTGGGTATGGGTCCAGCAATCTGAGGCAGAGTTACCCCTCATCTCCTAAAAGGAGTGAAGGTTGCAGTTCTATATTGGAACTGCCTGTCAGGTTTTTGAATATTATATTACCTTTTACTGATCAAAAAAAGGGGGAAGGCTGCTTCTTTTTCATCTTGGTCAAGTTGCACATATGTTGTAAGAAGTTTGGTCTGAGTTTAATAACTAAGAGAAGGGATCTGCTTATCTATTTGTGTTTTTCTTATATGAGTTTGATTGGTTTGGATTAAAGTAGGATAATGCACTAAAGTTGTTTTTGCTTTGTTTAGAGTTAACAACCTGCTTGGTTTTCTTAGAAAGCTTGATGAGCTATACTATGTGATACTCTTTCTCTGGCTTCTTTTAGATATTTCGTCTCATTTGCCAGGGGAATGGATGATATGAAATTGTTACTTAAAGAATTAAACAGGATGGTTAAAATAGGGAAGTGTTTTCGGAGTGTCTCTTCTATAGAACTATTGTTAGATGGACAATGTTATGTGAGAGTGAATATTGGAATTGTCTCTTAGGTCAACCTATCTGCAACACAAGTAGCCGATATTAACTGGATGTATGGTCACGCTAGATTAGAGAGAATTAATAATGATCACTTTTGAAGAAAGATGCAAGTAGCACAGATAAATGATGAAATAAGAGGGTTCTTGAGATGCTTTTGTCATGTCTCAACCTCTAGATGTAGCTGCTTATAGGTGTGAAATAGTGGGGATAGAAGGTGTTATAAAAGACTAGGTGGTCTAAAATTAAATTGAAAGAAGTCCTGAATAACCTACAATGATTCGTGTAGACTTAGTAAATAATAGGACATAATGGAAAGGAAAAGAAAAAACCCATACAGATGACACCACTTAGTTGGTTGCTAAGTTTGTCTTGTTGGTACATTCTTAAGGTCTGAGATGTTTGCTAGGAGTCTTTTAGTCTTGTTAAAACTGTATATGCCAGTAAAGAGTCTTTTATAAAATTTATATGCCAGTAGAAAATGGAAGAATTTCTTTTATAATTTTTTTTATAGAATTTCTAGTGCTAGAGAACCTACATTGTTGAATATTGGATTGAAGCTGATTGCTTTGTGGAGACATGAATAGTGAGGATTCACATAGCCCAGCCTAATTAGCTTGGGATTTAGGTGGTGTTGTTTTGATGTGGCTGCTTTTGAATTGTGTTAGTTAAGTGTAGCAGAAATGGATGTTAAATGTTTGATTTATAGAAGTTGGAAACGATCACATTCAACAATCAGTATAAATAGTATATATATAGGATAAAAGTTGTCGTTATGGCAATTCCACCAGTAACAAAATTTTGTGCATTGGTCTGGAGATCCATTATGCCTTCCACATTACTAATGCACAACCTTTTTTTTTCCTGTGGTGATTTACATTGCTACTGATGGCAGTTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGAGGTAAGACTTCCATGAAAAATTGTACTAATGATTATTGAAACACTGTTTAGAATTTCCCTTCACTATGTATATATTTCTTGTTGCAGGTTGCAATAATTTGTAATCACCAGCGTACTGTCTCGAAGTCCCATAGCGTGCAAATTTCAAGGTTGAATAACAAGATAGATGAGTTAAAGGTGATTACTTTTTGTTATCAGTGTTCATTCTCTGTAGTTCCATTTCTGTCTGATAAGTTTCTATAATGTGAGTGGCTAGTTTTTATTTGTCATCAAAATAGAAGAGGATTGCTTATTGATGATATTTTACATAAAGTTGACGTGTATTCAAAATACTTGCATTTCCTTAGGTTGTGATTGTGTTTTTATTAGGCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGCGTACAATTGCTGTCCTTGACTCGAGCCTTTCTTCCATTCTTTGTTTTAGTTGCTGACATATAAGTGTAATTGTTTGCAGATTACAGATAAAAATAGACCAAACTAATGTGAAGATTGATAACATAGAGAGGCAAATAGATACTAAAGAAGAGTTGAAAACTGTGGCTTTGGGCACATCAAAAATCAACTATTTGGATCCTAGGATTACTGTGGCATGGTGTAAGCGCCATGAGGTTCCCATTGAAAAGGTATATGCCTCGTTTACAATGTCTTATGGCTAAGTGTACTTCCATGAATTTCATCTCCTCTTATTTCTAATTGACCTCATGCATTGTGGTTACGTTTTGATCCTTCTTTATCCCTTGCAGATGTTCAACAAGTCTCTTCTAGCAAAGTTTGCCTGGGCGATGGATGTTGAACCTTCCTTCACATTCTAAATTTTTGGTGGTTGTTATAGTGTAGGACATCTCTTCAAAGTCAAGTCTCCCTCCTAATACCCAATTGTTCACATTTCCCCCTTCCTCCCTCCTGGAAAGAGAATAGGAAAAAAGTTCTATTATTTTTGCACTTAAAAAAGA</genome_strand>
        <mrna_strand>CGAACTTCCTCATCCCCATTCTCCTCCTCCTTCCGATCTCTTTCTCCGGCCAAATTCATCTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGGAGAACATTATATGACAGTATAGCATAGAGAAAGATCATGGCTGTAGAGGCTTTTGCCAAAACAAATTTGATGGAAGATATGGATGATGACGATGACATGCCTTTAGTTTTCAAACGAAGTAGTACCACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGAAGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCATGCCAAGAAAGTGCTTTGTACTTCAACATCAGTTCAGAAGTCTAGACCTCCCAAAAAAGAGGATTCAGATGATGAAACTCCCTTAGCATCAAGGTTTCCAATGAAATCCAATGCAGGGGCTTCCACTAGCAAGTTTTCTAGTTCTGAAGAAGTTAAGCCTAAGATTCGTCAGAATGGTTTGCCATCTGCGACAGTTTTAAGTAAGAGACCCCCTGGTGAGGTCAAGTCTGCTGCTCAGGCTTCAGTTAAAAAGCCTAGACTTTCTGATGCGTCCACACCTGTTTCTAGTAAGCAACCGCCTTTCAAAACTGAAAAGAAGACAGAGGACGATGACGACGATGTTCCTATATCTCAGAGGATAAAAAAGGCAGTAGATTCAGCTTCAGCTTCAGCTAGTAAAGTGTCATATGTGAAGAAAGCAACTAAAGTTGTTTCGTCATCGATGAAGAAAACAAAGAAGAAGTTGAAAAAACCCAAGTACTCTAAGTCGTCAAAACTGCAGCCAAGCTCTGGTGATGGGCAAAAATGGACTACACTGGAACACAATGGTGTGATTTTTCCACCTCCATACAAACCTCATGGGGTTAAGATGCTCTACAAGGGAAAGCCCGTGGATCTTACTCCAGAGCAGGAAGAG..............................................................................GTCGCAACAATGTATGCCGTGATGTTAGACACTGAATACATGACTAAAGAGCAGTTCAAAGAGAATTTCATGAATGACTGGAGAAAAATACTTGGAAAAAACCATGTCATTCAAAAGTTAGAAGAGTGTGATTTTACCCCAATATATGAGTGGCATCAGAGTGAGAAGGAGAAGAAGAAGCAAATGAGTTCAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGAAGGCATTGAGAGAAGAGAAACTTAAGCAAGAAGAGAAATACATGTGGGCTATTGTGGATGGTGTTAAAGAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGAACTTTCGGGTTGAACCACCTGGATTGTTCCGAGGCCGTGGGGAACATCCAAAG....................................................................................................................................ATGGGAAAGCTAAAGAGACGGATCCGGCCAAATGATATCACAATAAATATTGGAAAGGGTGTTCCAGTACCGGAGTGCCCCATCCCTGGCCAAAG..........................................................................................................................................................GTGGAAGGAAGTAAGGCATGACAACACAGTAACATGGTTAGCTTTCTGGAACGACCCTATTAATCCAAGAGAATTCAAATACGTTTTCCTAGCAGCCAGTAGTTCCTTGAAAGGGCAAAGTGATAAGGAGAAGTATGAGAAAGCTAGGCGTTTGAAG........................................................................................GATTACATAGAAGGCATTAGATCTGCATATACAAAAGATTTTGCAAGTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACGAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAG.................................................................................................................TTCGATTTTCTTGGTAAAGATTCTATCAGGTACCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTTAAAGCTATTCAACAGTTCCGAAGTG.......................................................................................GAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGAG......................................................................................GTTGCAATAATTTGTAATCACCAGCGTACTGTCTCGAAGTCCCATAGCGTGCAAATTTCAAGGTTGAATAACAAGATAGATGAGTTAAAG................................................................................................................................................................................................GCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGC...............................................................................ATTACAGATAAAAATAGACCAAACTAATGTGAAGATTGATAACATAGAGAGGCAAATAGATACTAAAGAAGAGTTGAAAACTGTGGCTTTGGGCACATCAAAAATCAACTATTTGGATCCTAGGATTACTGTGGCATGGTGTAAGCGCCATGAGGTTCCCATTGAAAAG........................................................................................................................ATGTTCAACAAGTCTCTTCTAGCAAAGTTTGCCTGGGCGATGGATGTTGAACCTTCCTTCACATTCTAAATTTTTGGTGGTTGTTATAGTGTAGGACATCTCTTCAAAGTCAAGTCTCCCTCCTAATACCCAATTGTTCACATTTCCCCCTTCCTCCCTCCTGGAAAGAGAATAGGAAAAAAGTTCTATTATTTTTGCACTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379573" ref_strand="+" ref_description="SGN-E379573 [TUS-3-H3](-)">
      <seq>gatttacattgctactgatggcagttgactaagctcacacaagggggggagcttgctgataaaattgcggtatataatgtggcaaataaagaggttgcaataatttgtaatcaccagcgtactgtctcgaagtcccatagcgtgcaaatttcaaggttgaataacaagatagatgagttaaaggctattttggaagaattcaaagtagatttggctcgggccaaaaaagggaagcctccggtgaaaggcgccgatggcaaggcgaagaggaacttgacccctcaagcgtacaattgctgtccttgactcgagcctttcttccattctttgttttagttgctgacatataagtgtaattgtttgcagattacagataaaaatagaccaaactaatgtgaagattgataacatagagaggcaaatagatactaaagaagagttgaaaactgtggctttgggcacatcaaaaatcaactatttggatcctaggattactgtggcatggtgtaagcgccatgaggttcccattgaaaagatgttcaacaagtctcttctagcaaagtttgcctgggcgatggatgttgaaccttccttcacattctaaatttttggtggttgttatagtgtaggacatctcttcaaagtcaagtctccctcctaatagccaattgttcacatttcccccttcctcccaactggaaagagaataggaaaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="43005" stop="41289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42705" g_stop="42613" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42612" i_stop="42527" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42526" g_stop="42437" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="183" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42436" i_stop="42245" i_length="192">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42244" g_stop="41893" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="535" r_length="352" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41892" i_stop="41773" i_length="120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41772" g_stop="41589" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="719" r_length="184" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E379573" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42705" e_stop="42613"/>
          <exon e_start="42526" e_stop="42437"/>
          <exon e_start="42244" e_stop="41893"/>
          <exon e_start="41772" e_stop="41589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTACATTGCTACTGATGGCAGTTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGAGGTAAGACTTCCATGAAAAATTGTACTAATGATTATTGAAACACTGTTTAGAATTTCCCTTCACTATGTATATATTTCTTGTTGCAGGTTGCAATAATTTGTAATCACCAGCGTACTGTCTCGAAGTCCCATAGCGTGCAAATTTCAAGGTTGAATAACAAGATAGATGAGTTAAAGGTGATTACTTTTTGTTATCAGTGTTCATTCTCTGTAGTTCCATTTCTGTCTGATAAGTTTCTATAATGTGAGTGGCTAGTTTTTATTTGTCATCAAAATAGAAGAGGATTGCTTATTGATGATATTTTACATAAAGTTGACGTGTATTCAAAATACTTGCATTTCCTTAGGTTGTGATTGTGTTTTTATTAGGCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGCGTACAATTGCTGTCCTTGACTCGAGCCTTTCTTCCATTCTTTGTTTTAGTTGCTGACATATAAGTGTAATTGTTTGCAGATTACAGATAAAAATAGACCAAACTAATGTGAAGATTGATAACATAGAGAGGCAAATAGATACTAAAGAAGAGTTGAAAACTGTGGCTTTGGGCACATCAAAAATCAACTATTTGGATCCTAGGATTACTGTGGCATGGTGTAAGCGCCATGAGGTTCCCATTGAAAAGGTATATGCCTCGTTTACAATGTCTTATGGCTAAGTGTACTTCCATGAATTTCATCTCCTCTTATTTCTAATTGACCTCATGCATTGTGGTTACGTTTTGATCCTTCTTTATCCCTTGCAGATGTTCAACAAGTCTCTTCTAGCAAAGTTTGCCTGGGCGATGGATGTTGAACCTTCCTTCACATTCTAAATTTTTGGTGGTTGTTATAGTGTAGGACATCTCTTCAAAGTCAAGTCTCCCTCCTAATACCCAATTGTTCACATTTCCCCCTTCCTCCCTCCTGGAAAGAGAATAGGAAAAAAGT</genome_strand>
        <mrna_strand>GATTTACATTGCTACTGATGGCAGTTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGAG......................................................................................GTTGCAATAATTTGTAATCACCAGCGTACTGTCTCGAAGTCCCATAGCGTGCAAATTTCAAGGTTGAATAACAAGATAGATGAGTTAAAG................................................................................................................................................................................................GCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGCGTACAATTGCTGTCCTTGACTCGAGCCTTTCTTCCATTCTTTGTTTTAGTTGCTGACATATAAGTGTAATTGTTTGCAGATTACAGATAAAAATAGACCAAACTAATGTGAAGATTGATAACATAGAGAGGCAAATAGATACTAAAGAAGAGTTGAAAACTGTGGCTTTGGGCACATCAAAAATCAACTATTTGGATCCTAGGATTACTGTGGCATGGTGTAAGCGCCATGAGGTTCCCATTGAAAAG........................................................................................................................ATGTTCAACAAGTCTCTTCTAGCAAAGTTTGCCTGGGCGATGGATGTTGAACCTTCCTTCACATTCTAAATTTTTGGTGGTTGTTATAGTGTAGGACATCTCTTCAAAGTCAAGTCTCCCTCCTAATAGCCAATTGTTCACATTTCCCCCTTCCTCCCAACTGGAAAGAGAATAGGAAAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237857" ref_strand="+" ref_description="SGN-E237857 [cLED-18-P19]">
      <seq>ttaaaggctattttttaagaatataaagtttatttggctcgggccaaaaaagggaagcctccggtgaaaggcgccgatggcaaggcgaagaggaacttgacccctcaagcattacagataaaaatagaccaaactaatgtgaagattgataacatagagaggcaaatagatactaaagaagagttgaaaactgtggctttgggcacatcaaaaatcaactatttggatcctaggattactgtggcatggagtaagcgccatgaggttcccattgaaaagatgttcaacaagtctcttttagcaaagtttgcctgggcgatggatgttgaacctttctttacattctaaatttttggcggttgttatagtgtaagacatctctttaaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="42546" stop="41362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42442" g_stop="42437" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42436" i_stop="42245" i_length="192">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42244" g_stop="42141" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="110" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42140" i_stop="42062" i_length="79">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42061" g_stop="41893" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="279" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41892" i_stop="41773" i_length="120">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41772" g_stop="41662" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="390" r_length="111" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E237857" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42442" e_stop="42437"/>
          <exon e_start="42244" e_stop="42141"/>
          <exon e_start="42061" e_stop="41893"/>
          <exon e_start="41772" e_stop="41662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGGTGATTACTTTTTGTTATCAGTGTTCATTCTCTGTAGTTCCATTTCTGTCTGATAAGTTTCTATAATGTGAGTGGCTAGTTTTTATTTGTCATCAAAATAGAAGAGGATTGCTTATTGATGATATTTTACATAAAGTTGACGTGTATTCAAAATACTTGCATTTCCTTAGGTTGTGATTGTGTTTTTATTAGGCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGCGTACAATTGCTGTCCTTGACTCGAGCCTTTCTTCCATTCTTTGTTTTAGTTGCTGACATATAAGTGTAATTGTTTGCAGATTACAGATAAAAATAGACCAAACTAATGTGAAGATTGATAACATAGAGAGGCAAATAGATACTAAAGAAGAGTTGAAAACTGTGGCTTTGGGCACATCAAAAATCAACTATTTGGATCCTAGGATTACTGTGGCATGGTGTAAGCGCCATGAGGTTCCCATTGAAAAGGTATATGCCTCGTTTACAATGTCTTATGGCTAAGTGTACTTCCATGAATTTCATCTCCTCTTATTTCTAATTGACCTCATGCATTGTGGTTACGTTTTGATCCTTCTTTATCCCTTGCAGATGTTCAACAAGTCTCTTCTAGCAAAGTTTGCCTGGGCGATGGATGTTGAACCTTCCTTCACATTCTAAATTTTTGGTGGTTGTTATAGTGTAGGACATCTCTTCAAAGTC</genome_strand>
        <mrna_strand>TTAAAG................................................................................................................................................................................................GCTATTTTTTAAGAATATAAAGTTTATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGC...............................................................................ATTACAGATAAAAATAGACCAAACTAATGTGAAGATTGATAACATAGAGAGGCAAATAGATACTAAAGAAGAGTTGAAAACTGTGGCTTTGGGCACATCAAAAATCAACTATTTGGATCCTAGGATTACTGTGGCATGGAGTAAGCGCCATGAGGTTCCCATTGAAAAG........................................................................................................................ATGTTCAACAAGTCTCTTTTAGCAAAGTTTGCCTGGGCGATGGATGTTGAACCTTTCTTTACATTCTAAATTTTTGGCGGTTGTTATAGTGTAAGACATCTCTTTAAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231941" ref_strand="+" ref_description="SGN-E231941 [cLED-7-N2]">
      <seq>ttaaaggctcttttggaagaattcaaagtagatttggctcgggccaaaaaagggaagcctccggtgaaaggcgccgatggcaaggcgaaaaggaacttgacccctcaagcattacagataaaaatagaccaaactaatgtgaagattgattacataaagaggcaaatagatactaaagaagagttgaaaactgtggctttgggcacatcaaaaatcaactatttggatcctaggattactgtggcatggtgtaagctccatgaggttcccattgaaaagatgttcaacaagtctcttctagcaaagtttgcctgggcaatggatgtcgaaccttgcttcacattctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="42546" stop="41403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42442" g_stop="42437" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42436" i_stop="42245" i_length="192">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42244" g_stop="42141" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="110" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42140" i_stop="42062" i_length="79">
            <donor d_prob="0.714" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42061" g_stop="41893" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="279" r_length="169" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41892" i_stop="41773" i_length="120">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41772" g_stop="41703" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="349" r_length="70" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E231941" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42442" e_stop="42437"/>
          <exon e_start="42244" e_stop="42141"/>
          <exon e_start="42061" e_stop="41893"/>
          <exon e_start="41772" e_stop="41703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGGTGATTACTTTTTGTTATCAGTGTTCATTCTCTGTAGTTCCATTTCTGTCTGATAAGTTTCTATAATGTGAGTGGCTAGTTTTTATTTGTCATCAAAATAGAAGAGGATTGCTTATTGATGATATTTTACATAAAGTTGACGTGTATTCAAAATACTTGCATTTCCTTAGGTTGTGATTGTGTTTTTATTAGGCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGCGTACAATTGCTGTCCTTGACTCGAGCCTTTCTTCCATTCTTTGTTTTAGTTGCTGACATATAAGTGTAATTGTTTGCAGATTACAGATAAAAATAGACCAAACTAATGTGAAGATTGATAACATAGAGAGGCAAATAGATACTAAAGAAGAGTTGAAAACTGTGGCTTTGGGCACATCAAAAATCAACTATTTGGATCCTAGGATTACTGTGGCATGGTGTAAGCGCCATGAGGTTCCCATTGAAAAGGTATATGCCTCGTTTACAATGTCTTATGGCTAAGTGTACTTCCATGAATTTCATCTCCTCTTATTTCTAATTGACCTCATGCATTGTGGTTACGTTTTGATCCTTCTTTATCCCTTGCAGATGTTCAACAAGTCTCTTCTAGCAAAGTTTGCCTGGGCGATGGATGTTGAACCTTCCTTCACATTCTAAA</genome_strand>
        <mrna_strand>TTAAAG................................................................................................................................................................................................GCTCTTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAAAGGAACTTGACCCCTCAAGC...............................................................................ATTACAGATAAAAATAGACCAAACTAATGTGAAGATTGATTACATAAAGAGGCAAATAGATACTAAAGAAGAGTTGAAAACTGTGGCTTTGGGCACATCAAAAATCAACTATTTGGATCCTAGGATTACTGTGGCATGGTGTAAGCTCCATGAGGTTCCCATTGAAAAG........................................................................................................................ATGTTCAACAAGTCTCTTCTAGCAAAGTTTGCCTGGGCAATGGATGTCGAACCTTGCTTCACATTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304543" ref_strand="+" ref_description="SGN-E304543 [cLEX-11-K24]">
      <seq>tgtttttaaagctattcaacagttccgaagtggaaaaaagggcagtgacgatctttttgacaagcttgatacgagtaagcttaatgcccatctaaaggaactcatgccagggctcacagcaaaagtatttcgtacatataatgcatcttttacattggagcagcaattgactaagctcacacaagggggggagcttgctgataaaattgcggtatataatgtggcaaataaagaggttgcaataatttgtaatcaccagcgtactgtctcgaagtcccatagcgtgcaaatttcaaggttgaataacaagatagatgagttaaaggctattttggaagaattcaaagtagatttggctcgggccaaaaaagggaagcctccggtgaaaggcgccgatggcaaggcgaagaggaacttgacccctcaagcattacagataaaaatagaccaaactaatgtgaagattgataacatagagaggcaaatagatactaaagaagagttgaaaactgtggctttgggcacatcaaaaatcaactatttggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="44816" stop="41643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44516" g_stop="44485" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44484" i_stop="44398" i_length="87">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44397" g_stop="44264" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="166" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44263" i_stop="42682" i_length="1582">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42681" g_stop="42613" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="235" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42612" i_stop="42527" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42437" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="325" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42436" i_stop="42245" i_length="192">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42244" g_stop="42141" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="429" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42140" i_stop="42062" i_length="79">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42061" g_stop="41943" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="548" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E304543" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44516" e_stop="44485"/>
          <exon e_start="44397" e_stop="44264"/>
          <exon e_start="42681" e_stop="42613"/>
          <exon e_start="42526" e_stop="42437"/>
          <exon e_start="42244" e_stop="42141"/>
          <exon e_start="42061" e_stop="41943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTTAAAGCTATTCAACAGTTCCGAAGTGGTTAGTAAATGCTGCTTTTGTGCTAGAATATGTGCTTTTTTTAAAAAAAAATCCGTTCTTGAAATACATGGATACACTTGATTTCAGGAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAAGTAAGTTGCTTTCAGAGACTAGACGTTTTTTTTGACTACTGTGTTACCCGTGACTAAGCTGCTTGTCAACCGGAGCTAGTTAGGGTTGTGAAGATTCATTATAAGTTGACGAGTTTTTCATTGGCCATCAACTTACTACAACCTTCCCACACATTGGGTATGGGTCCAGCAATCTGAGGCAGAGTTACCCCTCATCTCCTAAAAGGAGTGAAGGTTGCAGTTCTATATTGGAACTGCCTGTCAGGTTTTTGAATATTATATTACCTTTTACTGATCAAAAAAAGGGGGAAGGCTGCTTCTTTTTCATCTTGGTCAAGTTGCACATATGTTGTAAGAAGTTTGGTCTGAGTTTAATAACTAAGAGAAGGGATCTGCTTATCTATTTGTGTTTTTCTTATATGAGTTTGATTGGTTTGGATTAAAGTAGGATAATGCACTAAAGTTGTTTTTGCTTTGTTTAGAGTTAACAACCTGCTTGGTTTTCTTAGAAAGCTTGATGAGCTATACTATGTGATACTCTTTCTCTGGCTTCTTTTAGATATTTCGTCTCATTTGCCAGGGGAATGGATGATATGAAATTGTTACTTAAAGAATTAAACAGGATGGTTAAAATAGGGAAGTGTTTTCGGAGTGTCTCTTCTATAGAACTATTGTTAGATGGACAATGTTATGTGAGAGTGAATATTGGAATTGTCTCTTAGGTCAACCTATCTGCAACACAAGTAGCCGATATTAACTGGATGTATGGTCACGCTAGATTAGAGAGAATTAATAATGATCACTTTTGAAGAAAGATGCAAGTAGCACAGATAAATGATGAAATAAGAGGGTTCTTGAGATGCTTTTGTCATGTCTCAACCTCTAGATGTAGCTGCTTATAGGTGTGAAATAGTGGGGATAGAAGGTGTTATAAAAGACTAGGTGGTCTAAAATTAAATTGAAAGAAGTCCTGAATAACCTACAATGATTCGTGTAGACTTAGTAAATAATAGGACATAATGGAAAGGAAAAGAAAAAACCCATACAGATGACACCACTTAGTTGGTTGCTAAGTTTGTCTTGTTGGTACATTCTTAAGGTCTGAGATGTTTGCTAGGAGTCTTTTAGTCTTGTTAAAACTGTATATGCCAGTAAAGAGTCTTTTATAAAATTTATATGCCAGTAGAAAATGGAAGAATTTCTTTTATAATTTTTTTTATAGAATTTCTAGTGCTAGAGAACCTACATTGTTGAATATTGGATTGAAGCTGATTGCTTTGTGGAGACATGAATAGTGAGGATTCACATAGCCCAGCCTAATTAGCTTGGGATTTAGGTGGTGTTGTTTTGATGTGGCTGCTTTTGAATTGTGTTAGTTAAGTGTAGCAGAAATGGATGTTAAATGTTTGATTTATAGAAGTTGGAAACGATCACATTCAACAATCAGTATAAATAGTATATATATAGGATAAAAGTTGTCGTTATGGCAATTCCACCAGTAACAAAATTTTGTGCATTGGTCTGGAGATCCATTATGCCTTCCACATTACTAATGCACAACCTTTTTTTTTCCTGTGGTGATTTACATTGCTACTGATGGCAGTTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGAGGTAAGACTTCCATGAAAAATTGTACTAATGATTATTGAAACACTGTTTAGAATTTCCCTTCACTATGTATATATTTCTTGTTGCAGGTTGCAATAATTTGTAATCACCAGCGTACTGTCTCGAAGTCCCATAGCGTGCAAATTTCAAGGTTGAATAACAAGATAGATGAGTTAAAGGTGATTACTTTTTGTTATCAGTGTTCATTCTCTGTAGTTCCATTTCTGTCTGATAAGTTTCTATAATGTGAGTGGCTAGTTTTTATTTGTCATCAAAATAGAAGAGGATTGCTTATTGATGATATTTTACATAAAGTTGACGTGTATTCAAAATACTTGCATTTCCTTAGGTTGTGATTGTGTTTTTATTAGGCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGCGTACAATTGCTGTCCTTGACTCGAGCCTTTCTTCCATTCTTTGTTTTAGTTGCTGACATATAAGTGTAATTGTTTGCAGATTACAGATAAAAATAGACCAAACTAATGTGAAGATTGATAACATAGAGAGGCAAATAGATACTAAAGAAGAGTTGAAAACTGTGGCTTTGGGCACATCAAAAATCAACTATTTGGATC</genome_strand>
        <mrna_strand>TGTTTTTAAAGCTATTCAACAGTTCCGAAGTG.......................................................................................GAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGAG......................................................................................GTTGCAATAATTTGTAATCACCAGCGTACTGTCTCGAAGTCCCATAGCGTGCAAATTTCAAGGTTGAATAACAAGATAGATGAGTTAAAG................................................................................................................................................................................................GCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGC...............................................................................ATTACAGATAAAAATAGACCAAACTAATGTGAAGATTGATAACATAGAGAGGCAAATAGATACTAAAGAAGAGTTGAAAACTGTGGCTTTGGGCACATCAAAAATCAACTATTTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254916" ref_strand="+" ref_description="SGN-E254916 [cLEG-33-M19]">
      <seq>gaagtggaaaaaaaggcagtgacgatctttttgacaagcttgatacgagtaagcttaatgcccatctaaaggaactcatgccagggctcacagcaaaagtatttcgtacatataatgcatcttttacattggagcagcaattgactaagctcacacaagggggggagcttgctgataaaattgcggtatataatgtggcaaataaagaggttgcaataatttgtaatcaccagcgtactgtctcgaagtcccatagcgtgcaaatttcaaggttgaataacaagatagatgagttaaaggctattttggaagaattcaaagtagatttggctcgggccaaaaaagggaagcctccggtgaaaggcgccgatggcaaggcgaagaggaacttgacccctcaagcattacagataaaaatagaccaaactaatgtgaagattgataacatagagaggcaaatagatactaaagaagagttgaaaactgtggctttgggcacatcaaaaatcaactatttggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="44698" stop="41643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44490" g_stop="44485" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44484" i_stop="44398" i_length="87">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44397" g_stop="44264" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="140" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44263" i_stop="42682" i_length="1582">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42681" g_stop="42613" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="209" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42612" i_stop="42527" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42437" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="299" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42436" i_stop="42245" i_length="192">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42244" g_stop="42141" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="403" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42140" i_stop="42062" i_length="79">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42061" g_stop="41943" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="522" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E254916" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44490" e_stop="44485"/>
          <exon e_start="44397" e_stop="44264"/>
          <exon e_start="42681" e_stop="42613"/>
          <exon e_start="42526" e_stop="42437"/>
          <exon e_start="42244" e_stop="42141"/>
          <exon e_start="42061" e_stop="41943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGGTTAGTAAATGCTGCTTTTGTGCTAGAATATGTGCTTTTTTTAAAAAAAAATCCGTTCTTGAAATACATGGATACACTTGATTTCAGGAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAAGTAAGTTGCTTTCAGAGACTAGACGTTTTTTTTGACTACTGTGTTACCCGTGACTAAGCTGCTTGTCAACCGGAGCTAGTTAGGGTTGTGAAGATTCATTATAAGTTGACGAGTTTTTCATTGGCCATCAACTTACTACAACCTTCCCACACATTGGGTATGGGTCCAGCAATCTGAGGCAGAGTTACCCCTCATCTCCTAAAAGGAGTGAAGGTTGCAGTTCTATATTGGAACTGCCTGTCAGGTTTTTGAATATTATATTACCTTTTACTGATCAAAAAAAGGGGGAAGGCTGCTTCTTTTTCATCTTGGTCAAGTTGCACATATGTTGTAAGAAGTTTGGTCTGAGTTTAATAACTAAGAGAAGGGATCTGCTTATCTATTTGTGTTTTTCTTATATGAGTTTGATTGGTTTGGATTAAAGTAGGATAATGCACTAAAGTTGTTTTTGCTTTGTTTAGAGTTAACAACCTGCTTGGTTTTCTTAGAAAGCTTGATGAGCTATACTATGTGATACTCTTTCTCTGGCTTCTTTTAGATATTTCGTCTCATTTGCCAGGGGAATGGATGATATGAAATTGTTACTTAAAGAATTAAACAGGATGGTTAAAATAGGGAAGTGTTTTCGGAGTGTCTCTTCTATAGAACTATTGTTAGATGGACAATGTTATGTGAGAGTGAATATTGGAATTGTCTCTTAGGTCAACCTATCTGCAACACAAGTAGCCGATATTAACTGGATGTATGGTCACGCTAGATTAGAGAGAATTAATAATGATCACTTTTGAAGAAAGATGCAAGTAGCACAGATAAATGATGAAATAAGAGGGTTCTTGAGATGCTTTTGTCATGTCTCAACCTCTAGATGTAGCTGCTTATAGGTGTGAAATAGTGGGGATAGAAGGTGTTATAAAAGACTAGGTGGTCTAAAATTAAATTGAAAGAAGTCCTGAATAACCTACAATGATTCGTGTAGACTTAGTAAATAATAGGACATAATGGAAAGGAAAAGAAAAAACCCATACAGATGACACCACTTAGTTGGTTGCTAAGTTTGTCTTGTTGGTACATTCTTAAGGTCTGAGATGTTTGCTAGGAGTCTTTTAGTCTTGTTAAAACTGTATATGCCAGTAAAGAGTCTTTTATAAAATTTATATGCCAGTAGAAAATGGAAGAATTTCTTTTATAATTTTTTTTATAGAATTTCTAGTGCTAGAGAACCTACATTGTTGAATATTGGATTGAAGCTGATTGCTTTGTGGAGACATGAATAGTGAGGATTCACATAGCCCAGCCTAATTAGCTTGGGATTTAGGTGGTGTTGTTTTGATGTGGCTGCTTTTGAATTGTGTTAGTTAAGTGTAGCAGAAATGGATGTTAAATGTTTGATTTATAGAAGTTGGAAACGATCACATTCAACAATCAGTATAAATAGTATATATATAGGATAAAAGTTGTCGTTATGGCAATTCCACCAGTAACAAAATTTTGTGCATTGGTCTGGAGATCCATTATGCCTTCCACATTACTAATGCACAACCTTTTTTTTTCCTGTGGTGATTTACATTGCTACTGATGGCAGTTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGAGGTAAGACTTCCATGAAAAATTGTACTAATGATTATTGAAACACTGTTTAGAATTTCCCTTCACTATGTATATATTTCTTGTTGCAGGTTGCAATAATTTGTAATCACCAGCGTACTGTCTCGAAGTCCCATAGCGTGCAAATTTCAAGGTTGAATAACAAGATAGATGAGTTAAAGGTGATTACTTTTTGTTATCAGTGTTCATTCTCTGTAGTTCCATTTCTGTCTGATAAGTTTCTATAATGTGAGTGGCTAGTTTTTATTTGTCATCAAAATAGAAGAGGATTGCTTATTGATGATATTTTACATAAAGTTGACGTGTATTCAAAATACTTGCATTTCCTTAGGTTGTGATTGTGTTTTTATTAGGCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGCGTACAATTGCTGTCCTTGACTCGAGCCTTTCTTCCATTCTTTGTTTTAGTTGCTGACATATAAGTGTAATTGTTTGCAGATTACAGATAAAAATAGACCAAACTAATGTGAAGATTGATAACATAGAGAGGCAAATAGATACTAAAGAAGAGTTGAAAACTGTGGCTTTGGGCACATCAAAAATCAACTATTTGGATC</genome_strand>
        <mrna_strand>GAAGTG.......................................................................................GAAAAAAAGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGAG......................................................................................GTTGCAATAATTTGTAATCACCAGCGTACTGTCTCGAAGTCCCATAGCGTGCAAATTTCAAGGTTGAATAACAAGATAGATGAGTTAAAG................................................................................................................................................................................................GCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGC...............................................................................ATTACAGATAAAAATAGACCAAACTAATGTGAAGATTGATAACATAGAGAGGCAAATAGATACTAAAGAAGAGTTGAAAACTGTGGCTTTGGGCACATCAAAAATCAACTATTTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260444" ref_strand="+" ref_description="SGN-E260444 [cLEG-66-A24]">
      <seq>gtaaagatcctgtgaagcgtcagattgcagttgcaacttatcttatcgataaattagctctgagggcagggaatgagaaggatgatgacgaagctgatacagttggttgctgtactttgaaagtagagaatgtagagccagtacctccaaatattttgaagttcgattttcttggtaaagattctatcaggtaccaaaatgaggtggctgtgtatgagcctgtttttaaagctattcaacagttccgaagtggaaaaaagggcagtgacgatctttttgacaagcttgatacgagtaagcttaatgcccatctaaaggaactcatgccagggctcacagcaaaagtatttcgtacatataatgcatcttttacattggagcagcaattgactaagctcacacaagggggaggagcttgctgataaaattgcggtatataatgtggcaaataaagaggttgcaataatttgtaatcaccagcgtactgtctcgaagtcccatagcgtgcaaatttcaaggttgaataacaagatagatgagttaaaggctattttggaagaattcaaagtagatttggctcgggccaaaaaaaggaagcctccggtgaaaagcgccgatggcaaagcgaagaagaacttgacccctcaagcattacagataaaaatagaccaaactaatgtgaagattgataacatagagaggcaaatagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="45538" stop="41700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45238" g_stop="45159" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45158" i_stop="44770" i_length="389">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44769" g_stop="44689" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="161" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44688" i_stop="44576" i_length="113">
            <donor d_prob="0.564" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44575" g_stop="44485" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="252" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44484" i_stop="44398" i_length="87">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44397" g_stop="44264" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="386" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44263" i_stop="42682" i_length="1582">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42681" g_stop="42613" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="456" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42612" i_stop="42527" i_length="86">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42526" g_stop="42437" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="546" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42436" i_stop="42245" i_length="192">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42244" g_stop="42141" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="650" r_length="104" r_score="0.962"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="42140" i_stop="42062" i_length="79">
            <donor d_prob="0.714" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="42061" g_stop="42000" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="712" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E260444" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45238" e_stop="45159"/>
          <exon e_start="44769" e_stop="44689"/>
          <exon e_start="44575" e_stop="44485"/>
          <exon e_start="44397" e_stop="44264"/>
          <exon e_start="42681" e_stop="42613"/>
          <exon e_start="42526" e_stop="42437"/>
          <exon e_start="42244" e_stop="42141"/>
          <exon e_start="42061" e_stop="42000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAGGTATCAGGAACACTAGTTTATTTTTATTTTTCCTGGATACTTAACTAGGGGCAGCGTAGATCTCAAAAGAGTCTGAAAATTCCAAAACTGGTTGTCAATGCTGGTTTAGTATCTCTTTCAAAAATATTTTTATTAGCATAGAAGCAGGAAGTTATGGCAATATATGTTGCTCCTCGCTTTCCAATTCATAAGTTTACCAAGAGGTATAAAACCATAAAGCAAAAAATAATTTAAGCAGAGATCAATTTATCCAAAAAAACTGAAGGTGAGAGATCAGTTTTCCAGTTTTTTATATTTTTTTTGTATGAAGAACCCATGCTTTTGCCTGCAGAGGCATGGGACAATGCAAAGGTTGCGCAAGTGTTCTTAGTTATATCAATGTGATGCAGGATGATGACGAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAGGTATTGTGGTTTTAAAAGCTAAATTGGAAGAGCTCTCGGAAATTTACTCCTCTACAGGTTCTTAGTTTTGTGCTATTAATTGCAATGCATATAATTGACTTTGCTTTCTTCAGTTCGATTTTCTTGGTAAAGATTCTATCAGGTACCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTTAAAGCTATTCAACAGTTCCGAAGTGGTTAGTAAATGCTGCTTTTGTGCTAGAATATGTGCTTTTTTTAAAAAAAAATCCGTTCTTGAAATACATGGATACACTTGATTTCAGGAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAAGTAAGTTGCTTTCAGAGACTAGACGTTTTTTTTGACTACTGTGTTACCCGTGACTAAGCTGCTTGTCAACCGGAGCTAGTTAGGGTTGTGAAGATTCATTATAAGTTGACGAGTTTTTCATTGGCCATCAACTTACTACAACCTTCCCACACATTGGGTATGGGTCCAGCAATCTGAGGCAGAGTTACCCCTCATCTCCTAAAAGGAGTGAAGGTTGCAGTTCTATATTGGAACTGCCTGTCAGGTTTTTGAATATTATATTACCTTTTACTGATCAAAAAAAGGGGGAAGGCTGCTTCTTTTTCATCTTGGTCAAGTTGCACATATGTTGTAAGAAGTTTGGTCTGAGTTTAATAACTAAGAGAAGGGATCTGCTTATCTATTTGTGTTTTTCTTATATGAGTTTGATTGGTTTGGATTAAAGTAGGATAATGCACTAAAGTTGTTTTTGCTTTGTTTAGAGTTAACAACCTGCTTGGTTTTCTTAGAAAGCTTGATGAGCTATACTATGTGATACTCTTTCTCTGGCTTCTTTTAGATATTTCGTCTCATTTGCCAGGGGAATGGATGATATGAAATTGTTACTTAAAGAATTAAACAGGATGGTTAAAATAGGGAAGTGTTTTCGGAGTGTCTCTTCTATAGAACTATTGTTAGATGGACAATGTTATGTGAGAGTGAATATTGGAATTGTCTCTTAGGTCAACCTATCTGCAACACAAGTAGCCGATATTAACTGGATGTATGGTCACGCTAGATTAGAGAGAATTAATAATGATCACTTTTGAAGAAAGATGCAAGTAGCACAGATAAATGATGAAATAAGAGGGTTCTTGAGATGCTTTTGTCATGTCTCAACCTCTAGATGTAGCTGCTTATAGGTGTGAAATAGTGGGGATAGAAGGTGTTATAAAAGACTAGGTGGTCTAAAATTAAATTGAAAGAAGTCCTGAATAACCTACAATGATTCGTGTAGACTTAGTAAATAATAGGACATAATGGAAAGGAAAAGAAAAAACCCATACAGATGACACCACTTAGTTGGTTGCTAAGTTTGTCTTGTTGGTACATTCTTAAGGTCTGAGATGTTTGCTAGGAGTCTTTTAGTCTTGTTAAAACTGTATATGCCAGTAAAGAGTCTTTTATAAAATTTATATGCCAGTAGAAAATGGAAGAATTTCTTTTATAATTTTTTTTATAGAATTTCTAGTGCTAGAGAACCTACATTGTTGAATATTGGATTGAAGCTGATTGCTTTGTGGAGACATGAATAGTGAGGATTCACATAGCCCAGCCTAATTAGCTTGGGATTTAGGTGGTGTTGTTTTGATGTGGCTGCTTTTGAATTGTGTTAGTTAAGTGTAGCAGAAATGGATGTTAAATGTTTGATTTATAGAAGTTGGAAACGATCACATTCAACAATCAGTATAAATAGTATATATATAGGATAAAAGTTGTCGTTATGGCAATTCCACCAGTAACAAAATTTTGTGCATTGGTCTGGAGATCCATTATGCCTTCCACATTACTAATGCACAACCTTTTTTTTTCCTGTGGTGATTTACATTGCTACTGATGGCAGTTGACTAAGCTCACACAAGGGGG-GGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGAGGTAAGACTTCCATGAAAAATTGTACTAATGATTATTGAAACACTGTTTAGAATTTCCCTTCACTATGTATATATTTCTTGTTGCAGGTTGCAATAATTTGTAATCACCAGCGTACTGTCTCGAAGTCCCATAGCGTGCAAATTTCAAGGTTGAATAACAAGATAGATGAGTTAAAGGTGATTACTTTTTGTTATCAGTGTTCATTCTCTGTAGTTCCATTTCTGTCTGATAAGTTTCTATAATGTGAGTGGCTAGTTTTTATTTGTCATCAAAATAGAAGAGGATTGCTTATTGATGATATTTTACATAAAGTTGACGTGTATTCAAAATACTTGCATTTCCTTAGGTTGTGATTGTGTTTTTATTAGGCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGCGTACAATTGCTGTCCTTGACTCGAGCCTTTCTTCCATTCTTTGTTTTAGTTGCTGACATATAAGTGTAATTGTTTGCAGATTACAGATAAAAATAGACCAAACTAATGTGAAGATTGATAACATAGAGAGGCAAATAGATA</genome_strand>
        <mrna_strand>GTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACGAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAG.................................................................................................................TTCGATTTTCTTGGTAAAGATTCTATCAGGTACCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTTAAAGCTATTCAACAGTTCCGAAGTG.......................................................................................GAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACTAAGCTCACACAAGGGGGAGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGAG......................................................................................GTTGCAATAATTTGTAATCACCAGCGTACTGTCTCGAAGTCCCATAGCGTGCAAATTTCAAGGTTGAATAACAAGATAGATGAGTTAAAG................................................................................................................................................................................................GCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAAGGAAGCCTCCGGTGAAAAGCGCCGATGGCAAAGCGAAGAAGAACTTGACCCCTCAAGC...............................................................................ATTACAGATAAAAATAGACCAAACTAATGTGAAGATTGATAACATAGAGAGGCAAATAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304542" ref_strand="+" ref_description="SGN-E304542 [cLEX-11-K22]">
      <seq>tgtttttaaagctattcaacagttccgaagtggaaaaaagggcagtgacgatctttttgacaagcttgatacgagtaagcttaatgcccatctaaaggaactcatgccagggctcacagcaaaagtatttcgtacatataatgcatcttttacattggagcagcaattgactaagctcacacaagggggggagcttgctgataaaattgcggtatataatgtggcaaataaagaggttgcaataatttgtaatcaccagcgtactgtctcgaagtcccatagcgtgcaaatttcaaggttgaataacaagatagatgagttaaaggctattttggaagaattcaaagtagatttggctcgggccaaaaaagggaagcctccggtgaaaggcgccgatggcaaggcgaagaggaacttgacccctcaagcattacagataaaaatagaccaaactaatgtgaagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="44816" stop="41725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44516" g_stop="44485" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44484" i_stop="44398" i_length="87">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44397" g_stop="44264" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="166" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44263" i_stop="42682" i_length="1582">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42681" g_stop="42613" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="235" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42612" i_stop="42527" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42526" g_stop="42437" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="325" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42436" i_stop="42245" i_length="192">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42244" g_stop="42141" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="429" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42140" i_stop="42062" i_length="79">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42061" g_stop="42025" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="466" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E304542" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44516" e_stop="44485"/>
          <exon e_start="44397" e_stop="44264"/>
          <exon e_start="42681" e_stop="42613"/>
          <exon e_start="42526" e_stop="42437"/>
          <exon e_start="42244" e_stop="42141"/>
          <exon e_start="42061" e_stop="42025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTTAAAGCTATTCAACAGTTCCGAAGTGGTTAGTAAATGCTGCTTTTGTGCTAGAATATGTGCTTTTTTTAAAAAAAAATCCGTTCTTGAAATACATGGATACACTTGATTTCAGGAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAAGTAAGTTGCTTTCAGAGACTAGACGTTTTTTTTGACTACTGTGTTACCCGTGACTAAGCTGCTTGTCAACCGGAGCTAGTTAGGGTTGTGAAGATTCATTATAAGTTGACGAGTTTTTCATTGGCCATCAACTTACTACAACCTTCCCACACATTGGGTATGGGTCCAGCAATCTGAGGCAGAGTTACCCCTCATCTCCTAAAAGGAGTGAAGGTTGCAGTTCTATATTGGAACTGCCTGTCAGGTTTTTGAATATTATATTACCTTTTACTGATCAAAAAAAGGGGGAAGGCTGCTTCTTTTTCATCTTGGTCAAGTTGCACATATGTTGTAAGAAGTTTGGTCTGAGTTTAATAACTAAGAGAAGGGATCTGCTTATCTATTTGTGTTTTTCTTATATGAGTTTGATTGGTTTGGATTAAAGTAGGATAATGCACTAAAGTTGTTTTTGCTTTGTTTAGAGTTAACAACCTGCTTGGTTTTCTTAGAAAGCTTGATGAGCTATACTATGTGATACTCTTTCTCTGGCTTCTTTTAGATATTTCGTCTCATTTGCCAGGGGAATGGATGATATGAAATTGTTACTTAAAGAATTAAACAGGATGGTTAAAATAGGGAAGTGTTTTCGGAGTGTCTCTTCTATAGAACTATTGTTAGATGGACAATGTTATGTGAGAGTGAATATTGGAATTGTCTCTTAGGTCAACCTATCTGCAACACAAGTAGCCGATATTAACTGGATGTATGGTCACGCTAGATTAGAGAGAATTAATAATGATCACTTTTGAAGAAAGATGCAAGTAGCACAGATAAATGATGAAATAAGAGGGTTCTTGAGATGCTTTTGTCATGTCTCAACCTCTAGATGTAGCTGCTTATAGGTGTGAAATAGTGGGGATAGAAGGTGTTATAAAAGACTAGGTGGTCTAAAATTAAATTGAAAGAAGTCCTGAATAACCTACAATGATTCGTGTAGACTTAGTAAATAATAGGACATAATGGAAAGGAAAAGAAAAAACCCATACAGATGACACCACTTAGTTGGTTGCTAAGTTTGTCTTGTTGGTACATTCTTAAGGTCTGAGATGTTTGCTAGGAGTCTTTTAGTCTTGTTAAAACTGTATATGCCAGTAAAGAGTCTTTTATAAAATTTATATGCCAGTAGAAAATGGAAGAATTTCTTTTATAATTTTTTTTATAGAATTTCTAGTGCTAGAGAACCTACATTGTTGAATATTGGATTGAAGCTGATTGCTTTGTGGAGACATGAATAGTGAGGATTCACATAGCCCAGCCTAATTAGCTTGGGATTTAGGTGGTGTTGTTTTGATGTGGCTGCTTTTGAATTGTGTTAGTTAAGTGTAGCAGAAATGGATGTTAAATGTTTGATTTATAGAAGTTGGAAACGATCACATTCAACAATCAGTATAAATAGTATATATATAGGATAAAAGTTGTCGTTATGGCAATTCCACCAGTAACAAAATTTTGTGCATTGGTCTGGAGATCCATTATGCCTTCCACATTACTAATGCACAACCTTTTTTTTTCCTGTGGTGATTTACATTGCTACTGATGGCAGTTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGAGGTAAGACTTCCATGAAAAATTGTACTAATGATTATTGAAACACTGTTTAGAATTTCCCTTCACTATGTATATATTTCTTGTTGCAGGTTGCAATAATTTGTAATCACCAGCGTACTGTCTCGAAGTCCCATAGCGTGCAAATTTCAAGGTTGAATAACAAGATAGATGAGTTAAAGGTGATTACTTTTTGTTATCAGTGTTCATTCTCTGTAGTTCCATTTCTGTCTGATAAGTTTCTATAATGTGAGTGGCTAGTTTTTATTTGTCATCAAAATAGAAGAGGATTGCTTATTGATGATATTTTACATAAAGTTGACGTGTATTCAAAATACTTGCATTTCCTTAGGTTGTGATTGTGTTTTTATTAGGCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGCGTACAATTGCTGTCCTTGACTCGAGCCTTTCTTCCATTCTTTGTTTTAGTTGCTGACATATAAGTGTAATTGTTTGCAGATTACAGATAAAAATAGACCAAACTAATGTGAAGATT</genome_strand>
        <mrna_strand>TGTTTTTAAAGCTATTCAACAGTTCCGAAGTG.......................................................................................GAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGAG......................................................................................GTTGCAATAATTTGTAATCACCAGCGTACTGTCTCGAAGTCCCATAGCGTGCAAATTTCAAGGTTGAATAACAAGATAGATGAGTTAAAG................................................................................................................................................................................................GCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGC...............................................................................ATTACAGATAAAAATAGACCAAACTAATGTGAAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379931" ref_strand="+" ref_description="SGN-E379931 [TUS-3-H3]">
      <seq>ttgttgaatattggattgaagctgattgctttgtggagacatgaatagtgaggattcacatagcccagcctaattagcttgggatttaggtggtgttgttttgatgtggctgcttttgaattgtgttagttaagtgtagcagaaatggatgttaaatgtttgatttatagaagttggaaacgatcacattcaacaatcagtataaatagtatatatataggataaaagttgtcgttatggcaattccaccagtaacaaaattttgtgcattggtctggagatccattatgccttccacattactaatgcacaacctttttttttcctgtggtgatttacattgctactgatggcagttgactaagctcacacaagggggggagcttgctgataaaattgcggtatataatgtggcaaataaagaggttgcaataatttgtaatcaccagcgtactgtctcgaagtcccatagcgtgcaaatttcaaggttgaataacaagatagatgagttaaaggctattttggaagaattcaaagtagatttggctcgggccaaaaaagggaagcctccggtgaaaggcgccgatggcaaggcgaagaggaacttgacccctncagcgtacaattgctgtccttgactcgagcctttcttccattctttgttttagttgctgacatataagtgtaattgtttgcagattacagataaaaatagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="43337" stop="41743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43037" g_stop="42613" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42612" i_stop="42527" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42526" g_stop="42437" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="515" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42436" i_stop="42245" i_length="192">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42244" g_stop="42043" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="717" r_length="202" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E379931" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43037" e_stop="42613"/>
          <exon e_start="42526" e_stop="42437"/>
          <exon e_start="42244" e_stop="42043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGAATATTGGATTGAAGCTGATTGCTTTGTGGAGACATGAATAGTGAGGATTCACATAGCCCAGCCTAATTAGCTTGGGATTTAGGTGGTGTTGTTTTGATGTGGCTGCTTTTGAATTGTGTTAGTTAAGTGTAGCAGAAATGGATGTTAAATGTTTGATTTATAGAAGTTGGAAACGATCACATTCAACAATCAGTATAAATAGTATATATATAGGATAAAAGTTGTCGTTATGGCAATTCCACCAGTAACAAAATTTTGTGCATTGGTCTGGAGATCCATTATGCCTTCCACATTACTAATGCACAACCTTTTTTTTTCCTGTGGTGATTTACATTGCTACTGATGGCAGTTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGAGGTAAGACTTCCATGAAAAATTGTACTAATGATTATTGAAACACTGTTTAGAATTTCCCTTCACTATGTATATATTTCTTGTTGCAGGTTGCAATAATTTGTAATCACCAGCGTACTGTCTCGAAGTCCCATAGCGTGCAAATTTCAAGGTTGAATAACAAGATAGATGAGTTAAAGGTGATTACTTTTTGTTATCAGTGTTCATTCTCTGTAGTTCCATTTCTGTCTGATAAGTTTCTATAATGTGAGTGGCTAGTTTTTATTTGTCATCAAAATAGAAGAGGATTGCTTATTGATGATATTTTACATAAAGTTGACGTGTATTCAAAATACTTGCATTTCCTTAGGTTGTGATTGTGTTTTTATTAGGCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGCGTACAATTGCTGTCCTTGACTCGAGCCTTTCTTCCATTCTTTGTTTTAGTTGCTGACATATAAGTGTAATTGTTTGCAGATTACAGATAAAAATAGAC</genome_strand>
        <mrna_strand>TTGTTGAATATTGGATTGAAGCTGATTGCTTTGTGGAGACATGAATAGTGAGGATTCACATAGCCCAGCCTAATTAGCTTGGGATTTAGGTGGTGTTGTTTTGATGTGGCTGCTTTTGAATTGTGTTAGTTAAGTGTAGCAGAAATGGATGTTAAATGTTTGATTTATAGAAGTTGGAAACGATCACATTCAACAATCAGTATAAATAGTATATATATAGGATAAAAGTTGTCGTTATGGCAATTCCACCAGTAACAAAATTTTGTGCATTGGTCTGGAGATCCATTATGCCTTCCACATTACTAATGCACAACCTTTTTTTTTCCTGTGGTGATTTACATTGCTACTGATGGCAGTTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGAG......................................................................................GTTGCAATAATTTGTAATCACCAGCGTACTGTCTCGAAGTCCCATAGCGTGCAAATTTCAAGGTTGAATAACAAGATAGATGAGTTAAAG................................................................................................................................................................................................GCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTNCAGCGTACAATTGCTGTCCTTGACTCGAGCCTTTCTTCCATTCTTTGTTTTAGTTGCTGACATATAAGTGTAATTGTTTGCAGATTACAGATAAAAATAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325521" ref_strand="+" ref_description="SGN-E325521 [cTOC-15-G1]">
      <seq>aagtatgagaaagctaggcgtttgaaggattacatagaaggcattagatctgcatatacaaaagattttgcaagtaaagatcctgtgaagcgtcagattgcagttgcaacttatcttatcgataaattagctctgagggcagggaatgagaaggatgatgacgaagctgatacagttggttgctgtactttgaaagtagagaatgtagagccagtacctccaaatattttgaagttcgattttcttggtaaagattctatcaggtaccaaaatgaggtggctgtgtatgagcctgtttttaaagctattcaacagttccgaagtggaaaaaagggcagtgacgatctttttgacaagcttgatacgagtaagcttaatgcccatctaaaggaactcatgccagggctcacagcaaaagtatttcgtacatataatgcatcttttacattggagcagcaattgactaagctcacacaagggggggagcttgctgataaaattgcggtatataatgtggcaaataaagaggttgcaataatttgtaatcaccagcgtactgtctcgaagtcccatagcgtgcaaatttcaaggttgaataacaagatagatgagttaaaggctattttggaagaattcaaagtagatttggctcgggccaaaaaagggaagcctccggtgaaaggcgccgatggcaaggcgaagaggaacttgacccctcaagcattacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="45593" stop="41836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45399" g_stop="45373" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45372" i_stop="45285" i_length="88">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45284" g_stop="45159" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="153" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45158" i_stop="44770" i_length="389">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44769" g_stop="44689" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="234" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44688" i_stop="44576" i_length="113">
            <donor d_prob="0.564" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44575" g_stop="44485" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="325" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44484" i_stop="44398" i_length="87">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44397" g_stop="44264" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="459" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44263" i_stop="42682" i_length="1582">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42681" g_stop="42613" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="528" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42612" i_stop="42527" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42526" g_stop="42437" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="618" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="42436" i_stop="42245" i_length="192">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="42244" g_stop="42141" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="722" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="42140" i_stop="42062" i_length="79">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="42061" g_stop="42055" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="729" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E325521" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45399" e_stop="45373"/>
          <exon e_start="45284" e_stop="45159"/>
          <exon e_start="44769" e_stop="44689"/>
          <exon e_start="44575" e_stop="44485"/>
          <exon e_start="44397" e_stop="44264"/>
          <exon e_start="42681" e_stop="42613"/>
          <exon e_start="42526" e_stop="42437"/>
          <exon e_start="42244" e_stop="42141"/>
          <exon e_start="42061" e_stop="42055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTATGAGAAAGCTAGGCGTTTGAAGGTACAATGAAGCAATTGGCAAGTTGATTTTTTTTTTTGTACTGGTTGCACATGATGATTGGTGGCTATAAACTGTCTCTCGGTTGCAGGATTACATAGAAGGCATTAGATCTGCATATACAAAAGATTTTGCAAGTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAGGTATCAGGAACACTAGTTTATTTTTATTTTTCCTGGATACTTAACTAGGGGCAGCGTAGATCTCAAAAGAGTCTGAAAATTCCAAAACTGGTTGTCAATGCTGGTTTAGTATCTCTTTCAAAAATATTTTTATTAGCATAGAAGCAGGAAGTTATGGCAATATATGTTGCTCCTCGCTTTCCAATTCATAAGTTTACCAAGAGGTATAAAACCATAAAGCAAAAAATAATTTAAGCAGAGATCAATTTATCCAAAAAAACTGAAGGTGAGAGATCAGTTTTCCAGTTTTTTATATTTTTTTTGTATGAAGAACCCATGCTTTTGCCTGCAGAGGCATGGGACAATGCAAAGGTTGCGCAAGTGTTCTTAGTTATATCAATGTGATGCAGGATGATGACGAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAGGTATTGTGGTTTTAAAAGCTAAATTGGAAGAGCTCTCGGAAATTTACTCCTCTACAGGTTCTTAGTTTTGTGCTATTAATTGCAATGCATATAATTGACTTTGCTTTCTTCAGTTCGATTTTCTTGGTAAAGATTCTATCAGGTACCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTTAAAGCTATTCAACAGTTCCGAAGTGGTTAGTAAATGCTGCTTTTGTGCTAGAATATGTGCTTTTTTTAAAAAAAAATCCGTTCTTGAAATACATGGATACACTTGATTTCAGGAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAAGTAAGTTGCTTTCAGAGACTAGACGTTTTTTTTGACTACTGTGTTACCCGTGACTAAGCTGCTTGTCAACCGGAGCTAGTTAGGGTTGTGAAGATTCATTATAAGTTGACGAGTTTTTCATTGGCCATCAACTTACTACAACCTTCCCACACATTGGGTATGGGTCCAGCAATCTGAGGCAGAGTTACCCCTCATCTCCTAAAAGGAGTGAAGGTTGCAGTTCTATATTGGAACTGCCTGTCAGGTTTTTGAATATTATATTACCTTTTACTGATCAAAAAAAGGGGGAAGGCTGCTTCTTTTTCATCTTGGTCAAGTTGCACATATGTTGTAAGAAGTTTGGTCTGAGTTTAATAACTAAGAGAAGGGATCTGCTTATCTATTTGTGTTTTTCTTATATGAGTTTGATTGGTTTGGATTAAAGTAGGATAATGCACTAAAGTTGTTTTTGCTTTGTTTAGAGTTAACAACCTGCTTGGTTTTCTTAGAAAGCTTGATGAGCTATACTATGTGATACTCTTTCTCTGGCTTCTTTTAGATATTTCGTCTCATTTGCCAGGGGAATGGATGATATGAAATTGTTACTTAAAGAATTAAACAGGATGGTTAAAATAGGGAAGTGTTTTCGGAGTGTCTCTTCTATAGAACTATTGTTAGATGGACAATGTTATGTGAGAGTGAATATTGGAATTGTCTCTTAGGTCAACCTATCTGCAACACAAGTAGCCGATATTAACTGGATGTATGGTCACGCTAGATTAGAGAGAATTAATAATGATCACTTTTGAAGAAAGATGCAAGTAGCACAGATAAATGATGAAATAAGAGGGTTCTTGAGATGCTTTTGTCATGTCTCAACCTCTAGATGTAGCTGCTTATAGGTGTGAAATAGTGGGGATAGAAGGTGTTATAAAAGACTAGGTGGTCTAAAATTAAATTGAAAGAAGTCCTGAATAACCTACAATGATTCGTGTAGACTTAGTAAATAATAGGACATAATGGAAAGGAAAAGAAAAAACCCATACAGATGACACCACTTAGTTGGTTGCTAAGTTTGTCTTGTTGGTACATTCTTAAGGTCTGAGATGTTTGCTAGGAGTCTTTTAGTCTTGTTAAAACTGTATATGCCAGTAAAGAGTCTTTTATAAAATTTATATGCCAGTAGAAAATGGAAGAATTTCTTTTATAATTTTTTTTATAGAATTTCTAGTGCTAGAGAACCTACATTGTTGAATATTGGATTGAAGCTGATTGCTTTGTGGAGACATGAATAGTGAGGATTCACATAGCCCAGCCTAATTAGCTTGGGATTTAGGTGGTGTTGTTTTGATGTGGCTGCTTTTGAATTGTGTTAGTTAAGTGTAGCAGAAATGGATGTTAAATGTTTGATTTATAGAAGTTGGAAACGATCACATTCAACAATCAGTATAAATAGTATATATATAGGATAAAAGTTGTCGTTATGGCAATTCCACCAGTAACAAAATTTTGTGCATTGGTCTGGAGATCCATTATGCCTTCCACATTACTAATGCACAACCTTTTTTTTTCCTGTGGTGATTTACATTGCTACTGATGGCAGTTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGAGGTAAGACTTCCATGAAAAATTGTACTAATGATTATTGAAACACTGTTTAGAATTTCCCTTCACTATGTATATATTTCTTGTTGCAGGTTGCAATAATTTGTAATCACCAGCGTACTGTCTCGAAGTCCCATAGCGTGCAAATTTCAAGGTTGAATAACAAGATAGATGAGTTAAAGGTGATTACTTTTTGTTATCAGTGTTCATTCTCTGTAGTTCCATTTCTGTCTGATAAGTTTCTATAATGTGAGTGGCTAGTTTTTATTTGTCATCAAAATAGAAGAGGATTGCTTATTGATGATATTTTACATAAAGTTGACGTGTATTCAAAATACTTGCATTTCCTTAGGTTGTGATTGTGTTTTTATTAGGCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGCGTACAATTGCTGTCCTTGACTCGAGCCTTTCTTCCATTCTTTGTTTTAGTTGCTGACATATAAGTGTAATTGTTTGCAGATTACAG</genome_strand>
        <mrna_strand>AAGTATGAGAAAGCTAGGCGTTTGAAG........................................................................................GATTACATAGAAGGCATTAGATCTGCATATACAAAAGATTTTGCAAGTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACGAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAG.................................................................................................................TTCGATTTTCTTGGTAAAGATTCTATCAGGTACCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTTAAAGCTATTCAACAGTTCCGAAGTG.......................................................................................GAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGAG......................................................................................GTTGCAATAATTTGTAATCACCAGCGTACTGTCTCGAAGTCCCATAGCGTGCAAATTTCAAGGTTGAATAACAAGATAGATGAGTTAAAG................................................................................................................................................................................................GCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGC...............................................................................ATTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247689" ref_strand="+" ref_description="SGN-E247689 [cLEF-42-M21]">
      <seq>ttgaaggattacatagaaggcattagatctgcatatacaaaagattttgcaagtaaagatcctgtgaagcgtcagattgcagttgcaacttatcttatcgataaattagctctgagggcagggaatgagaaggatgatgacgaagctgatacagttggttgctgtactttgaaagtagagaatgtagagccagtacctccaaatattttgaagttcgattttcttggtaaagattctatcaggtaccaaaatgaggtggctgtgtatgagcctgtttttaaagctattcaacagttccgaagtggaaaaaagggcagtgacgatctttttgacaagcttgatacgagtaagcttaatgcccatctaaaggaactcatgccagggctcacagcaaaagtatttcgtacatataatgcatcttttacattggagcagcaattgactaagctcacacaagggggggagcttgctgataaaattgcggtatataatgtggcaaataaagaggttgcaataatttgtaatcaccagcgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="45590" stop="42197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45378" g_stop="45373" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45372" i_stop="45285" i_length="88">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45284" g_stop="45159" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="132" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45158" i_stop="44770" i_length="389">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44769" g_stop="44689" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="213" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44688" i_stop="44576" i_length="113">
            <donor d_prob="0.564" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44575" g_stop="44485" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="304" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44484" i_stop="44398" i_length="87">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44397" g_stop="44264" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="438" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44263" i_stop="42682" i_length="1582">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42681" g_stop="42613" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="507" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42612" i_stop="42527" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42526" g_stop="42497" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="537" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E247689" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45378" e_stop="45373"/>
          <exon e_start="45284" e_stop="45159"/>
          <exon e_start="44769" e_stop="44689"/>
          <exon e_start="44575" e_stop="44485"/>
          <exon e_start="44397" e_stop="44264"/>
          <exon e_start="42681" e_stop="42613"/>
          <exon e_start="42526" e_stop="42497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGGTACAATGAAGCAATTGGCAAGTTGATTTTTTTTTTTGTACTGGTTGCACATGATGATTGGTGGCTATAAACTGTCTCTCGGTTGCAGGATTACATAGAAGGCATTAGATCTGCATATACAAAAGATTTTGCAAGTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAGGTATCAGGAACACTAGTTTATTTTTATTTTTCCTGGATACTTAACTAGGGGCAGCGTAGATCTCAAAAGAGTCTGAAAATTCCAAAACTGGTTGTCAATGCTGGTTTAGTATCTCTTTCAAAAATATTTTTATTAGCATAGAAGCAGGAAGTTATGGCAATATATGTTGCTCCTCGCTTTCCAATTCATAAGTTTACCAAGAGGTATAAAACCATAAAGCAAAAAATAATTTAAGCAGAGATCAATTTATCCAAAAAAACTGAAGGTGAGAGATCAGTTTTCCAGTTTTTTATATTTTTTTTGTATGAAGAACCCATGCTTTTGCCTGCAGAGGCATGGGACAATGCAAAGGTTGCGCAAGTGTTCTTAGTTATATCAATGTGATGCAGGATGATGACGAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAGGTATTGTGGTTTTAAAAGCTAAATTGGAAGAGCTCTCGGAAATTTACTCCTCTACAGGTTCTTAGTTTTGTGCTATTAATTGCAATGCATATAATTGACTTTGCTTTCTTCAGTTCGATTTTCTTGGTAAAGATTCTATCAGGTACCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTTAAAGCTATTCAACAGTTCCGAAGTGGTTAGTAAATGCTGCTTTTGTGCTAGAATATGTGCTTTTTTTAAAAAAAAATCCGTTCTTGAAATACATGGATACACTTGATTTCAGGAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAAGTAAGTTGCTTTCAGAGACTAGACGTTTTTTTTGACTACTGTGTTACCCGTGACTAAGCTGCTTGTCAACCGGAGCTAGTTAGGGTTGTGAAGATTCATTATAAGTTGACGAGTTTTTCATTGGCCATCAACTTACTACAACCTTCCCACACATTGGGTATGGGTCCAGCAATCTGAGGCAGAGTTACCCCTCATCTCCTAAAAGGAGTGAAGGTTGCAGTTCTATATTGGAACTGCCTGTCAGGTTTTTGAATATTATATTACCTTTTACTGATCAAAAAAAGGGGGAAGGCTGCTTCTTTTTCATCTTGGTCAAGTTGCACATATGTTGTAAGAAGTTTGGTCTGAGTTTAATAACTAAGAGAAGGGATCTGCTTATCTATTTGTGTTTTTCTTATATGAGTTTGATTGGTTTGGATTAAAGTAGGATAATGCACTAAAGTTGTTTTTGCTTTGTTTAGAGTTAACAACCTGCTTGGTTTTCTTAGAAAGCTTGATGAGCTATACTATGTGATACTCTTTCTCTGGCTTCTTTTAGATATTTCGTCTCATTTGCCAGGGGAATGGATGATATGAAATTGTTACTTAAAGAATTAAACAGGATGGTTAAAATAGGGAAGTGTTTTCGGAGTGTCTCTTCTATAGAACTATTGTTAGATGGACAATGTTATGTGAGAGTGAATATTGGAATTGTCTCTTAGGTCAACCTATCTGCAACACAAGTAGCCGATATTAACTGGATGTATGGTCACGCTAGATTAGAGAGAATTAATAATGATCACTTTTGAAGAAAGATGCAAGTAGCACAGATAAATGATGAAATAAGAGGGTTCTTGAGATGCTTTTGTCATGTCTCAACCTCTAGATGTAGCTGCTTATAGGTGTGAAATAGTGGGGATAGAAGGTGTTATAAAAGACTAGGTGGTCTAAAATTAAATTGAAAGAAGTCCTGAATAACCTACAATGATTCGTGTAGACTTAGTAAATAATAGGACATAATGGAAAGGAAAAGAAAAAACCCATACAGATGACACCACTTAGTTGGTTGCTAAGTTTGTCTTGTTGGTACATTCTTAAGGTCTGAGATGTTTGCTAGGAGTCTTTTAGTCTTGTTAAAACTGTATATGCCAGTAAAGAGTCTTTTATAAAATTTATATGCCAGTAGAAAATGGAAGAATTTCTTTTATAATTTTTTTTATAGAATTTCTAGTGCTAGAGAACCTACATTGTTGAATATTGGATTGAAGCTGATTGCTTTGTGGAGACATGAATAGTGAGGATTCACATAGCCCAGCCTAATTAGCTTGGGATTTAGGTGGTGTTGTTTTGATGTGGCTGCTTTTGAATTGTGTTAGTTAAGTGTAGCAGAAATGGATGTTAAATGTTTGATTTATAGAAGTTGGAAACGATCACATTCAACAATCAGTATAAATAGTATATATATAGGATAAAAGTTGTCGTTATGGCAATTCCACCAGTAACAAAATTTTGTGCATTGGTCTGGAGATCCATTATGCCTTCCACATTACTAATGCACAACCTTTTTTTTTCCTGTGGTGATTTACATTGCTACTGATGGCAGTTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGAGGTAAGACTTCCATGAAAAATTGTACTAATGATTATTGAAACACTGTTTAGAATTTCCCTTCACTATGTATATATTTCTTGTTGCAGGTTGCAATAATTTGTAATCACCAGCGTACT</genome_strand>
        <mrna_strand>TTGAAG........................................................................................GATTACATAGAAGGCATTAGATCTGCATATACAAAAGATTTTGCAAGTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACGAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAG.................................................................................................................TTCGATTTTCTTGGTAAAGATTCTATCAGGTACCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTTAAAGCTATTCAACAGTTCCGAAGTG.......................................................................................GAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGAG......................................................................................GTTGCAATAATTTGTAATCACCAGCGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284820" ref_strand="+" ref_description="SGN-E284820 [cLER-19-G19]">
      <seq>ttggtaaagattctatcaggtaccaaaatgatgtggctgtgtatgagcctgttgttaaagctattcaacagttccgaagtggaaaaaagggcagtgacgatctttttgacaagcttgatacgagtaagcttaatgcccatctaaaggaactcatgccagggctcacagcaaaagtatttcgtacatataatgcatcttttacattggagcagcaattgactaagctcacacaagggggggagcttgctgataaaattgtcggatataatgtggcaaataaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="44865" stop="42313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44565" g_stop="44485" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44484" i_stop="44398" i_length="87">
            <donor d_prob="0.876" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44397" g_stop="44264" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="215" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44263" i_stop="42682" i_length="1582">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42681" g_stop="42613" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="284" r_length="69" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E284820" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44565" e_stop="44485"/>
          <exon e_start="44397" e_stop="44264"/>
          <exon e_start="42681" e_stop="42613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTAAAGATTCTATCAGGTACCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTTAAAGCTATTCAACAGTTCCGAAGTGGTTAGTAAATGCTGCTTTTGTGCTAGAATATGTGCTTTTTTTAAAAAAAAATCCGTTCTTGAAATACATGGATACACTTGATTTCAGGAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAAGTAAGTTGCTTTCAGAGACTAGACGTTTTTTTTGACTACTGTGTTACCCGTGACTAAGCTGCTTGTCAACCGGAGCTAGTTAGGGTTGTGAAGATTCATTATAAGTTGACGAGTTTTTCATTGGCCATCAACTTACTACAACCTTCCCACACATTGGGTATGGGTCCAGCAATCTGAGGCAGAGTTACCCCTCATCTCCTAAAAGGAGTGAAGGTTGCAGTTCTATATTGGAACTGCCTGTCAGGTTTTTGAATATTATATTACCTTTTACTGATCAAAAAAAGGGGGAAGGCTGCTTCTTTTTCATCTTGGTCAAGTTGCACATATGTTGTAAGAAGTTTGGTCTGAGTTTAATAACTAAGAGAAGGGATCTGCTTATCTATTTGTGTTTTTCTTATATGAGTTTGATTGGTTTGGATTAAAGTAGGATAATGCACTAAAGTTGTTTTTGCTTTGTTTAGAGTTAACAACCTGCTTGGTTTTCTTAGAAAGCTTGATGAGCTATACTATGTGATACTCTTTCTCTGGCTTCTTTTAGATATTTCGTCTCATTTGCCAGGGGAATGGATGATATGAAATTGTTACTTAAAGAATTAAACAGGATGGTTAAAATAGGGAAGTGTTTTCGGAGTGTCTCTTCTATAGAACTATTGTTAGATGGACAATGTTATGTGAGAGTGAATATTGGAATTGTCTCTTAGGTCAACCTATCTGCAACACAAGTAGCCGATATTAACTGGATGTATGGTCACGCTAGATTAGAGAGAATTAATAATGATCACTTTTGAAGAAAGATGCAAGTAGCACAGATAAATGATGAAATAAGAGGGTTCTTGAGATGCTTTTGTCATGTCTCAACCTCTAGATGTAGCTGCTTATAGGTGTGAAATAGTGGGGATAGAAGGTGTTATAAAAGACTAGGTGGTCTAAAATTAAATTGAAAGAAGTCCTGAATAACCTACAATGATTCGTGTAGACTTAGTAAATAATAGGACATAATGGAAAGGAAAAGAAAAAACCCATACAGATGACACCACTTAGTTGGTTGCTAAGTTTGTCTTGTTGGTACATTCTTAAGGTCTGAGATGTTTGCTAGGAGTCTTTTAGTCTTGTTAAAACTGTATATGCCAGTAAAGAGTCTTTTATAAAATTTATATGCCAGTAGAAAATGGAAGAATTTCTTTTATAATTTTTTTTATAGAATTTCTAGTGCTAGAGAACCTACATTGTTGAATATTGGATTGAAGCTGATTGCTTTGTGGAGACATGAATAGTGAGGATTCACATAGCCCAGCCTAATTAGCTTGGGATTTAGGTGGTGTTGTTTTGATGTGGCTGCTTTTGAATTGTGTTAGTTAAGTGTAGCAGAAATGGATGTTAAATGTTTGATTTATAGAAGTTGGAAACGATCACATTCAACAATCAGTATAAATAGTATATATATAGGATAAAAGTTGTCGTTATGGCAATTCCACCAGTAACAAAATTTTGTGCATTGGTCTGGAGATCCATTATGCCTTCCACATTACTAATGCACAACCTTTTTTTTTCCTGTGGTGATTTACATTGCTACTGATGGCAGTTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGAG</genome_strand>
        <mrna_strand>TTGGTAAAGATTCTATCAGGTACCAAAATGATGTGGCTGTGTATGAGCCTGTTGTTAAAGCTATTCAACAGTTCCGAAGTG.......................................................................................GAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGTCGGATATAATGTGGCAAATAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256340" ref_strand="+" ref_description="SGN-E256340 [cLEG-37-F17]">
      <seq>taaagatcctgtgaagcgtcagattgcgggtgcaacttatcttatcgatgaattagctctgagggcagggaatgagaaggatgatgacgaagctgatacagttggttgctgtactttgaaagtagagaatgtagagccagtacctccaaatattttgaagttcgattttcttggtaaagattctatcaggtaccaaaatgaggtggctgtgtatgagcctgtttttaaagctattcaacagttccgaagtggaaaaaagggcagtgacgatctttttgacaagcttgatacgagtaagcttaatgcccatctaaaggaactcatgccagggctcacagcaaaagtatttcgtacatataatgcatcttttacattggagcagcaattgactaagctcacacaagggggggagcttgctgataaaattgcggtatataatgtggcaaataaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="45537" stop="42314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45237" g_stop="45159" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45158" i_stop="44770" i_length="389">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44769" g_stop="44689" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="160" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44688" i_stop="44576" i_length="113">
            <donor d_prob="0.564" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44575" g_stop="44485" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="251" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44484" i_stop="44398" i_length="87">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44397" g_stop="44264" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="385" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44263" i_stop="42682" i_length="1582">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42681" g_stop="42614" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="453" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E256340" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45237" e_stop="45159"/>
          <exon e_start="44769" e_stop="44689"/>
          <exon e_start="44575" e_stop="44485"/>
          <exon e_start="44397" e_stop="44264"/>
          <exon e_start="42681" e_stop="42614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAGGTATCAGGAACACTAGTTTATTTTTATTTTTCCTGGATACTTAACTAGGGGCAGCGTAGATCTCAAAAGAGTCTGAAAATTCCAAAACTGGTTGTCAATGCTGGTTTAGTATCTCTTTCAAAAATATTTTTATTAGCATAGAAGCAGGAAGTTATGGCAATATATGTTGCTCCTCGCTTTCCAATTCATAAGTTTACCAAGAGGTATAAAACCATAAAGCAAAAAATAATTTAAGCAGAGATCAATTTATCCAAAAAAACTGAAGGTGAGAGATCAGTTTTCCAGTTTTTTATATTTTTTTTGTATGAAGAACCCATGCTTTTGCCTGCAGAGGCATGGGACAATGCAAAGGTTGCGCAAGTGTTCTTAGTTATATCAATGTGATGCAGGATGATGACGAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAGGTATTGTGGTTTTAAAAGCTAAATTGGAAGAGCTCTCGGAAATTTACTCCTCTACAGGTTCTTAGTTTTGTGCTATTAATTGCAATGCATATAATTGACTTTGCTTTCTTCAGTTCGATTTTCTTGGTAAAGATTCTATCAGGTACCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTTAAAGCTATTCAACAGTTCCGAAGTGGTTAGTAAATGCTGCTTTTGTGCTAGAATATGTGCTTTTTTTAAAAAAAAATCCGTTCTTGAAATACATGGATACACTTGATTTCAGGAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAAGTAAGTTGCTTTCAGAGACTAGACGTTTTTTTTGACTACTGTGTTACCCGTGACTAAGCTGCTTGTCAACCGGAGCTAGTTAGGGTTGTGAAGATTCATTATAAGTTGACGAGTTTTTCATTGGCCATCAACTTACTACAACCTTCCCACACATTGGGTATGGGTCCAGCAATCTGAGGCAGAGTTACCCCTCATCTCCTAAAAGGAGTGAAGGTTGCAGTTCTATATTGGAACTGCCTGTCAGGTTTTTGAATATTATATTACCTTTTACTGATCAAAAAAAGGGGGAAGGCTGCTTCTTTTTCATCTTGGTCAAGTTGCACATATGTTGTAAGAAGTTTGGTCTGAGTTTAATAACTAAGAGAAGGGATCTGCTTATCTATTTGTGTTTTTCTTATATGAGTTTGATTGGTTTGGATTAAAGTAGGATAATGCACTAAAGTTGTTTTTGCTTTGTTTAGAGTTAACAACCTGCTTGGTTTTCTTAGAAAGCTTGATGAGCTATACTATGTGATACTCTTTCTCTGGCTTCTTTTAGATATTTCGTCTCATTTGCCAGGGGAATGGATGATATGAAATTGTTACTTAAAGAATTAAACAGGATGGTTAAAATAGGGAAGTGTTTTCGGAGTGTCTCTTCTATAGAACTATTGTTAGATGGACAATGTTATGTGAGAGTGAATATTGGAATTGTCTCTTAGGTCAACCTATCTGCAACACAAGTAGCCGATATTAACTGGATGTATGGTCACGCTAGATTAGAGAGAATTAATAATGATCACTTTTGAAGAAAGATGCAAGTAGCACAGATAAATGATGAAATAAGAGGGTTCTTGAGATGCTTTTGTCATGTCTCAACCTCTAGATGTAGCTGCTTATAGGTGTGAAATAGTGGGGATAGAAGGTGTTATAAAAGACTAGGTGGTCTAAAATTAAATTGAAAGAAGTCCTGAATAACCTACAATGATTCGTGTAGACTTAGTAAATAATAGGACATAATGGAAAGGAAAAGAAAAAACCCATACAGATGACACCACTTAGTTGGTTGCTAAGTTTGTCTTGTTGGTACATTCTTAAGGTCTGAGATGTTTGCTAGGAGTCTTTTAGTCTTGTTAAAACTGTATATGCCAGTAAAGAGTCTTTTATAAAATTTATATGCCAGTAGAAAATGGAAGAATTTCTTTTATAATTTTTTTTATAGAATTTCTAGTGCTAGAGAACCTACATTGTTGAATATTGGATTGAAGCTGATTGCTTTGTGGAGACATGAATAGTGAGGATTCACATAGCCCAGCCTAATTAGCTTGGGATTTAGGTGGTGTTGTTTTGATGTGGCTGCTTTTGAATTGTGTTAGTTAAGTGTAGCAGAAATGGATGTTAAATGTTTGATTTATAGAAGTTGGAAACGATCACATTCAACAATCAGTATAAATAGTATATATATAGGATAAAAGTTGTCGTTATGGCAATTCCACCAGTAACAAAATTTTGTGCATTGGTCTGGAGATCCATTATGCCTTCCACATTACTAATGCACAACCTTTTTTTTTCCTGTGGTGATTTACATTGCTACTGATGGCAGTTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGA</genome_strand>
        <mrna_strand>TAAAGATCCTGTGAAGCGTCAGATTGCGGGTGCAACTTATCTTATCGATGAATTAGCTCTGAGGGCAGGGAATGAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACGAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAG.................................................................................................................TTCGATTTTCTTGGTAAAGATTCTATCAGGTACCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTTAAAGCTATTCAACAGTTCCGAAGTG.......................................................................................GAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307030" ref_strand="+" ref_description="SGN-E307030 [cLEY-15-G1]">
      <seq>acacagtaacatggttagctttctggaacgaccctattagtccaagagaattcaaatacgttttcctagcagccagtagttccttgaaagggcaaagtgataaggagaagtatgagaaagctaggcgtttgaaggattacatagaaggcattagatctgcatatacaaaagattttgcaagtaaagatcctgtgaagcgtcagattgcagttgcaacttatcttatcgataaattagctctgagggcagggaatgagaaggatgatgacgaagctgatacagttggttgctgtactttgaaagtagagaatgtagagccagtacctccaaatattttgaagttcgattttcttggtaaagattctatcaggtaccaaaatgaggtggctgtgtatgagcctgtttttaaagctattcaacagttccgaagtggaaaaaagggcagtgacgatctttttgacaagcttgatacgagtaagcttaatgcccatctaaaggaactcatgccagggctcacagcaaaagtatttcgtacatataatgcatcttttacattggagcagcaattgactaaactcacacaagggggggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="45806" stop="42354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45506" g_stop="45373" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45372" i_stop="45285" i_length="88">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45284" g_stop="45159" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="260" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45158" i_stop="44770" i_length="389">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44769" g_stop="44689" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="341" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44688" i_stop="44576" i_length="113">
            <donor d_prob="0.564" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44575" g_stop="44485" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="432" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44484" i_stop="44398" i_length="87">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44397" g_stop="44264" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="566" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44263" i_stop="42682" i_length="1582">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42681" g_stop="42654" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="594" r_length="28" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E307030" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45506" e_stop="45373"/>
          <exon e_start="45284" e_stop="45159"/>
          <exon e_start="44769" e_stop="44689"/>
          <exon e_start="44575" e_stop="44485"/>
          <exon e_start="44397" e_stop="44264"/>
          <exon e_start="42681" e_stop="42654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAGTAACATGGTTAGCTTTCTGGAACGACCCTATTAATCCAAGAGAATTCAAATACGTTTTCCTAGCAGCCAGTAGTTCCTTGAAAGGGCAAAGTGATAAGGAGAAGTATGAGAAAGCTAGGCGTTTGAAGGTACAATGAAGCAATTGGCAAGTTGATTTTTTTTTTTGTACTGGTTGCACATGATGATTGGTGGCTATAAACTGTCTCTCGGTTGCAGGATTACATAGAAGGCATTAGATCTGCATATACAAAAGATTTTGCAAGTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAGGTATCAGGAACACTAGTTTATTTTTATTTTTCCTGGATACTTAACTAGGGGCAGCGTAGATCTCAAAAGAGTCTGAAAATTCCAAAACTGGTTGTCAATGCTGGTTTAGTATCTCTTTCAAAAATATTTTTATTAGCATAGAAGCAGGAAGTTATGGCAATATATGTTGCTCCTCGCTTTCCAATTCATAAGTTTACCAAGAGGTATAAAACCATAAAGCAAAAAATAATTTAAGCAGAGATCAATTTATCCAAAAAAACTGAAGGTGAGAGATCAGTTTTCCAGTTTTTTATATTTTTTTTGTATGAAGAACCCATGCTTTTGCCTGCAGAGGCATGGGACAATGCAAAGGTTGCGCAAGTGTTCTTAGTTATATCAATGTGATGCAGGATGATGACGAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAGGTATTGTGGTTTTAAAAGCTAAATTGGAAGAGCTCTCGGAAATTTACTCCTCTACAGGTTCTTAGTTTTGTGCTATTAATTGCAATGCATATAATTGACTTTGCTTTCTTCAGTTCGATTTTCTTGGTAAAGATTCTATCAGGTACCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTTAAAGCTATTCAACAGTTCCGAAGTGGTTAGTAAATGCTGCTTTTGTGCTAGAATATGTGCTTTTTTTAAAAAAAAATCCGTTCTTGAAATACATGGATACACTTGATTTCAGGAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAAGTAAGTTGCTTTCAGAGACTAGACGTTTTTTTTGACTACTGTGTTACCCGTGACTAAGCTGCTTGTCAACCGGAGCTAGTTAGGGTTGTGAAGATTCATTATAAGTTGACGAGTTTTTCATTGGCCATCAACTTACTACAACCTTCCCACACATTGGGTATGGGTCCAGCAATCTGAGGCAGAGTTACCCCTCATCTCCTAAAAGGAGTGAAGGTTGCAGTTCTATATTGGAACTGCCTGTCAGGTTTTTGAATATTATATTACCTTTTACTGATCAAAAAAAGGGGGAAGGCTGCTTCTTTTTCATCTTGGTCAAGTTGCACATATGTTGTAAGAAGTTTGGTCTGAGTTTAATAACTAAGAGAAGGGATCTGCTTATCTATTTGTGTTTTTCTTATATGAGTTTGATTGGTTTGGATTAAAGTAGGATAATGCACTAAAGTTGTTTTTGCTTTGTTTAGAGTTAACAACCTGCTTGGTTTTCTTAGAAAGCTTGATGAGCTATACTATGTGATACTCTTTCTCTGGCTTCTTTTAGATATTTCGTCTCATTTGCCAGGGGAATGGATGATATGAAATTGTTACTTAAAGAATTAAACAGGATGGTTAAAATAGGGAAGTGTTTTCGGAGTGTCTCTTCTATAGAACTATTGTTAGATGGACAATGTTATGTGAGAGTGAATATTGGAATTGTCTCTTAGGTCAACCTATCTGCAACACAAGTAGCCGATATTAACTGGATGTATGGTCACGCTAGATTAGAGAGAATTAATAATGATCACTTTTGAAGAAAGATGCAAGTAGCACAGATAAATGATGAAATAAGAGGGTTCTTGAGATGCTTTTGTCATGTCTCAACCTCTAGATGTAGCTGCTTATAGGTGTGAAATAGTGGGGATAGAAGGTGTTATAAAAGACTAGGTGGTCTAAAATTAAATTGAAAGAAGTCCTGAATAACCTACAATGATTCGTGTAGACTTAGTAAATAATAGGACATAATGGAAAGGAAAAGAAAAAACCCATACAGATGACACCACTTAGTTGGTTGCTAAGTTTGTCTTGTTGGTACATTCTTAAGGTCTGAGATGTTTGCTAGGAGTCTTTTAGTCTTGTTAAAACTGTATATGCCAGTAAAGAGTCTTTTATAAAATTTATATGCCAGTAGAAAATGGAAGAATTTCTTTTATAATTTTTTTTATAGAATTTCTAGTGCTAGAGAACCTACATTGTTGAATATTGGATTGAAGCTGATTGCTTTGTGGAGACATGAATAGTGAGGATTCACATAGCCCAGCCTAATTAGCTTGGGATTTAGGTGGTGTTGTTTTGATGTGGCTGCTTTTGAATTGTGTTAGTTAAGTGTAGCAGAAATGGATGTTAAATGTTTGATTTATAGAAGTTGGAAACGATCACATTCAACAATCAGTATAAATAGTATATATATAGGATAAAAGTTGTCGTTATGGCAATTCCACCAGTAACAAAATTTTGTGCATTGGTCTGGAGATCCATTATGCCTTCCACATTACTAATGCACAACCTTTTTTTTTCCTGTGGTGATTTACATTGCTACTGATGGCAGTTGACTAAGCTCACACAAGGGGGGGAGC</genome_strand>
        <mrna_strand>ACACAGTAACATGGTTAGCTTTCTGGAACGACCCTATTAGTCCAAGAGAATTCAAATACGTTTTCCTAGCAGCCAGTAGTTCCTTGAAAGGGCAAAGTGATAAGGAGAAGTATGAGAAAGCTAGGCGTTTGAAG........................................................................................GATTACATAGAAGGCATTAGATCTGCATATACAAAAGATTTTGCAAGTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACGAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAG.................................................................................................................TTCGATTTTCTTGGTAAAGATTCTATCAGGTACCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTTAAAGCTATTCAACAGTTCCGAAGTG.......................................................................................GAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACTAAACTCACACAAGGGGGGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209206" ref_strand="+" ref_description="SGN-E209206 [cLEC-38-L8]">
      <seq>ttgttgaatattggattgaagctgattgctttgtggagacatgaatagtgaggattcacatagcccagcctaattagcttgggatttaggtggtgttgttttgatgtggctgcttttgaattgtgttagttaagtgtagcagaaatggatgttaaatgtttgatttatagaagttggaaacgatcacattcaacaatcagtataaatagtatatatataggataaaagttgtcgttatggcaattccaccagtaacaaaattttgtgcattggtctggagatccattatgccttccacattactaatgcacaacctttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="43337" stop="42415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43037" g_stop="42715" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E209206" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43037" e_stop="42715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGAATATTGGATTGAAGCTGATTGCTTTGTGGAGACATGAATAGTGAGGATTCACATAGCCCAGCCTAATTAGCTTGGGATTTAGGTGGTGTTGTTTTGATGTGGCTGCTTTTGAATTGTGTTAGTTAAGTGTAGCAGAAATGGATGTTAAATGTTTGATTTATAGAAGTTGGAAACGATCACATTCAACAATCAGTATAAATAGTATATATATAGGATAAAAGTTGTCGTTATGGCAATTCCACCAGTAACAAAATTTTGTGCATTGGTCTGGAGATCCATTATGCCTTCCACATTACTAATGCACAACCTTTTTTTT</genome_strand>
        <mrna_strand>TTGTTGAATATTGGATTGAAGCTGATTGCTTTGTGGAGACATGAATAGTGAGGATTCACATAGCCCAGCCTAATTAGCTTGGGATTTAGGTGGTGTTGTTTTGATGTGGCTGCTTTTGAATTGTGTTAGTTAAGTGTAGCAGAAATGGATGTTAAATGTTTGATTTATAGAAGTTGGAAACGATCACATTCAACAATCAGTATAAATAGTATATATATAGGATAAAAGTTGTCGTTATGGCAATTCCACCAGTAACAAAATTTTGTGCATTGGTCTGGAGATCCATTATGCCTTCCACATTACTAATGCACAACCTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293391" ref_strand="+" ref_description="SGN-E293391 [cLET-18-L9]">
      <seq>caaaagaattttgcaggtaaagatcctgtgaagcgtcagattgcagttgcaacttatcttatcgataaattagctctgagggcagggaatgagaaggatgatgacgacgctgatacagttggttgctgtactttgaaagtagagaatgtagagccagtacctccaaatattttgaagttcgattttcttggtaaagattctatcaggtaccaaaatgaggtggctgtgtatgagcctgtttttaaagctattcaacagttccgaagtggaaaaaagggcagtgacgatctttttgacaagcttgatacgagtaagcttaatgcccatctaaaggaactcatgccagggctcacagcaaaagtatttcgtacatataatgcatcttttacattggagcagcaagtaagttgctttcagagactagacgttttttttgactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="45553" stop="43924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45253" g_stop="45159" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45158" i_stop="44770" i_length="389">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44769" g_stop="44689" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="177" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44688" i_stop="44576" i_length="113">
            <donor d_prob="0.564" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44575" g_stop="44485" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="268" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44484" i_stop="44398" i_length="87">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44397" g_stop="44224" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="442" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E293391" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45253" e_stop="45159"/>
          <exon e_start="44769" e_stop="44689"/>
          <exon e_start="44575" e_stop="44485"/>
          <exon e_start="44397" e_stop="44224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAG-ATTTTGCAAGTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAGGTATCAGGAACACTAGTTTATTTTTATTTTTCCTGGATACTTAACTAGGGGCAGCGTAGATCTCAAAAGAGTCTGAAAATTCCAAAACTGGTTGTCAATGCTGGTTTAGTATCTCTTTCAAAAATATTTTTATTAGCATAGAAGCAGGAAGTTATGGCAATATATGTTGCTCCTCGCTTTCCAATTCATAAGTTTACCAAGAGGTATAAAACCATAAAGCAAAAAATAATTTAAGCAGAGATCAATTTATCCAAAAAAACTGAAGGTGAGAGATCAGTTTTCCAGTTTTTTATATTTTTTTTGTATGAAGAACCCATGCTTTTGCCTGCAGAGGCATGGGACAATGCAAAGGTTGCGCAAGTGTTCTTAGTTATATCAATGTGATGCAGGATGATGACGAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAGGTATTGTGGTTTTAAAAGCTAAATTGGAAGAGCTCTCGGAAATTTACTCCTCTACAGGTTCTTAGTTTTGTGCTATTAATTGCAATGCATATAATTGACTTTGCTTTCTTCAGTTCGATTTTCTTGGTAAAGATTCTATCAGGTACCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTTAAAGCTATTCAACAGTTCCGAAGTGGTTAGTAAATGCTGCTTTTGTGCTAGAATATGTGCTTTTTTTAAAAAAAAATCCGTTCTTGAAATACATGGATACACTTGATTTCAGGAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAAGTAAGTTGCTTTCAGAGACTAGACGTTTTTTTTGACTACT</genome_strand>
        <mrna_strand>CAAAAGAATTTTGCAGGTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACGACGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAG.................................................................................................................TTCGATTTTCTTGGTAAAGATTCTATCAGGTACCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTTAAAGCTATTCAACAGTTCCGAAGTG.......................................................................................GAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAAGTAAGTTGCTTTCAGAGACTAGACGTTTTTTTTGACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319305" ref_strand="+" ref_description="SGN-E319305 [cTOB-16-F14]">
      <seq>ttccttgaaagggcaaagtgataaggagaagtatgagaaagctaggcgtttgaaggattacataaaaggcattagatctgcatatacaaaagattttgcaagtaaagatcctgtgaagcgtcagattgcagttgcaacttatcttatcgataaattagctctgagggcagggaatgagaaggatgatgacgaagctgatacagttggttgctgtactttgaaagtagagaatgtagagccagtacctccaaatattttgaagttcgattttcttggtaaagattctatcaggtaccaaaatgaggtggctgtgtatgagcctgtttttaaagctattcaacagttccgaagtggaaaaaaaggcagtgacgatctttttgacaagcttgatacgagtaagcttaatgcccatctaaaggaactcatgccagggctcacagcataagtatttcgtacatataatgcatcttttacattggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="45727" stop="43969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45427" g_stop="45373" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45372" i_stop="45285" i_length="88">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45284" g_stop="45159" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="181" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45158" i_stop="44770" i_length="389">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44769" g_stop="44689" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="262" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44688" i_stop="44576" i_length="113">
            <donor d_prob="0.564" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44575" g_stop="44485" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="353" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44484" i_stop="44398" i_length="87">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44397" g_stop="44269" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="482" r_length="129" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E319305" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45427" e_stop="45373"/>
          <exon e_start="45284" e_stop="45159"/>
          <exon e_start="44769" e_stop="44689"/>
          <exon e_start="44575" e_stop="44485"/>
          <exon e_start="44397" e_stop="44269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTGAAAGGGCAAAGTGATAAGGAGAAGTATGAGAAAGCTAGGCGTTTGAAGGTACAATGAAGCAATTGGCAAGTTGATTTTTTTTTTTGTACTGGTTGCACATGATGATTGGTGGCTATAAACTGTCTCTCGGTTGCAGGATTACATAGAAGGCATTAGATCTGCATATACAAAAGATTTTGCAAGTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAGGTATCAGGAACACTAGTTTATTTTTATTTTTCCTGGATACTTAACTAGGGGCAGCGTAGATCTCAAAAGAGTCTGAAAATTCCAAAACTGGTTGTCAATGCTGGTTTAGTATCTCTTTCAAAAATATTTTTATTAGCATAGAAGCAGGAAGTTATGGCAATATATGTTGCTCCTCGCTTTCCAATTCATAAGTTTACCAAGAGGTATAAAACCATAAAGCAAAAAATAATTTAAGCAGAGATCAATTTATCCAAAAAAACTGAAGGTGAGAGATCAGTTTTCCAGTTTTTTATATTTTTTTTGTATGAAGAACCCATGCTTTTGCCTGCAGAGGCATGGGACAATGCAAAGGTTGCGCAAGTGTTCTTAGTTATATCAATGTGATGCAGGATGATGACGAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAGGTATTGTGGTTTTAAAAGCTAAATTGGAAGAGCTCTCGGAAATTTACTCCTCTACAGGTTCTTAGTTTTGTGCTATTAATTGCAATGCATATAATTGACTTTGCTTTCTTCAGTTCGATTTTCTTGGTAAAGATTCTATCAGGTACCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTTAAAGCTATTCAACAGTTCCGAAGTGGTTAGTAAATGCTGCTTTTGTGCTAGAATATGTGCTTTTTTTAAAAAAAAATCCGTTCTTGAAATACATGGATACACTTGATTTCAGGAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGC</genome_strand>
        <mrna_strand>TTCCTTGAAAGGGCAAAGTGATAAGGAGAAGTATGAGAAAGCTAGGCGTTTGAAG........................................................................................GATTACATAAAAGGCATTAGATCTGCATATACAAAAGATTTTGCAAGTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACGAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAG.................................................................................................................TTCGATTTTCTTGGTAAAGATTCTATCAGGTACCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTTAAAGCTATTCAACAGTTCCGAAGTG.......................................................................................GAAAAAAAGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCATAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211548" ref_strand="+" ref_description="SGN-E211548 [cLEC-67-C21]">
      <seq>ttgagagaagagaaacttaagcaagaagagaaatacatgtgggctattgtggatggtgttaaagagaaggttgggaactttcgggttgaaccacctggattgttccgaggccgtggggaacatccaaagatgggaaagctaaagagacggatccggccaaatgatatcacaataaatattggaaagggtgttccagtaccggagtgccccatccctggccaaaggtggaaggaagtaaggcatgacaacacagtaacatggttagctttctggaacgaccctattaatccaagagaattcaaatacgttttcctagcagccagtagttccttgaaagggcaaagtgataaggagaagtatgagaaagctaggcgtttgaaggattacatagaaggcattagatctgcatatacaaaagattttgcaagtaaagatcctgtgaagcgtcagattgcagttgcaacttatcttatcgataaattagctctgagggcagggaatgagaaggatgatgacgaagctgatacagttggttgctgtactttgaaagtagagaatgtagagccagtacctccaaatattttgaagttcgattttcttggtaaagattctatcaggtaccaaaatgaggtggctgtgtatgagcctgtttttaagctattcacagttccgaagtggaaaaagggcagtgacgatctttttgacagcttgatacgagtaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="47879" stop="44048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47579" g_stop="47511" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47510" i_stop="45971" i_length="1540">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45970" g_stop="45911" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="129" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45910" i_stop="45779" i_length="132">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45778" g_stop="45684" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="224" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45683" i_stop="45530" i_length="154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45529" g_stop="45373" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="381" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45372" i_stop="45285" i_length="88">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45284" g_stop="45159" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="507" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45158" i_stop="44770" i_length="389">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44769" g_stop="44689" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="588" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44688" i_stop="44576" i_length="113">
            <donor d_prob="0.564" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44575" g_stop="44485" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="677" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44484" i_stop="44398" i_length="87">
            <donor d_prob="0.876" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44397" g_stop="44348" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="725" r_length="48" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E211548" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47579" e_stop="47511"/>
          <exon e_start="45970" e_stop="45911"/>
          <exon e_start="45778" e_stop="45684"/>
          <exon e_start="45529" e_stop="45373"/>
          <exon e_start="45284" e_stop="45159"/>
          <exon e_start="44769" e_stop="44689"/>
          <exon e_start="44575" e_stop="44485"/>
          <exon e_start="44397" e_stop="44348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAGAAGAGAAACTTAAGCAAGAAGAGAAATACATGTGGGCTATTGTGGATGGTGTTAAAGAGAAGGTTTGGTTCTGTTTAGCTTTAGCTTTTAGCTTTCATACATGGTACTTTAAGAGAAATTATGTTGTGCTATCTTCTAAATTTATCCCAATGGGATTATAAGATGGTCTTACATCTTTTTTCTCTTAAAAAAGGTCTTATGTCTTCTTTTCTAGGGGATGTTTCTTCTGTCTTTTTCAACATCATCTGCTGTTATTGTGGTAATTTCATCTTATTCACAATGCATTTATCCAGCTAGCACAATTTTTTGGTTGGAGTTGTCCAAAATTCTTTTGTGTTTCATTTTTCTAATCTGGTGCTATTCTTGTAATGATTTCCTCTTGACTGATCTTAAACAACATTGGGGAGCTTTATTTCCTTTATGGCTGTGAATAGTTTTTAGAGAACATATTCTCTTCATCTTTGGAATTTACTTTCCTCTGATTAAAGATTCTTTTTCTTATTGGGAGTAATTAAGTTCTTTTTAAAATTGCATTTAAATGGTGTTAAAAGGTTTTCAAAGTAGATTTTTATGAATACCTAAATGTATTTCCCTGTTATATTTCCCTTCCACGAACATTCCATTTTCAGTTTCTGTAATTCTGTTGAGATTTTTGATAGGGCCTGATGTGTTTTTTGCATCTTAATAGTGATTGTTCGAATTGAACCGTACTTCCTGCTCTTATTTGATGGTTGGTTTTCATGGGATGACTATTCTAGGCAGAATTCATCAGCTGTAAAGAGAAAAAAATTGTCTTCCCATTGTCATGTATTGCTGAAGTACATGGACTTGATTTAAGAAAGAAAATAGAAGTGGAAACATTATCAAAAAGATAAGTGGAAAGACGAGCAAAAAGAGTTAGAATGTTCATTCCTGAGTAAGAACAAGGAATGAGGTTCATTAACTTGGATGAAAGGGCTTTCCCTAGAATGAAATGCCCTCTTTTTTACAACTCCAAATTGAAGAATGGACGTAACCGAATGATGGTTTGTTGAATCTTACGTTAGAAATATCTCTTCTTTTATATGTATGTGTGGGGGAAGAGAGGATAGTCTTGTTTTTGGAACAGAAGGCTTCTAGCTCTGGTCTGATGGAGCAAGTTTTGTTTGTTATTGTTAGTGATTTGTGTACTTCTGAGCTCTTGGGGAGTTGGATCGAATTTGCAGCCGTGTTGATAGGTGACGATCTCGAAAATAAATTGATATAATGAAGATGTTGTAATCCATTGTTACATATTGTTTTCACATGTGTTTGCTGATTGCTTCATAGTCCTTTTCTGGATGTTTCTTTGTTTTCATTATTTAGCTGTTTCTTGTGCCATCAGTACATCCTCTTTTTGGTATTTTTTTGTTTCTTAGCCATATGATATTGAGCCCCCTAGCTTTATCTTAACTCTCAAACTTGAGCTTCCCCTTCCTTTTGGTGATGTGCCAACATGGTGTTCTTTATCGTGTTTAACCTACCTATGTATCCACCCCTAAAATCAGAAAGGCCCATAGTATTCGGAGCATGGAAAACTTATAAACCAACTGCGAAATGGTCTGACCATTTCGTTATGTGCAGGTTGGGAACTTTCGGGTTGAACCACCTGGATTGTTCCGAGGCCGTGGGGAACATCCAAAGGTATGTTGGCCTTCTATTTATTGGGTTAAACTGCCAAGAACATTCTACTATGTGCAGAATGGTGTATTATTTATGTTTAGGTACTTCCATGTTTCGCTGTGGTATTGATGGATGTTGCTTTGAATGGTATAGATGGGAAAGCTAAAGAGACGGATCCGGCCAAATGATATCACAATAAATATTGGAAAGGGTGTTCCAGTACCGGAGTGCCCCATCCCTGGCCAAAGGTTCTCTTCATTTTCTCTGTTATCCTTTTGAAAGAATTGTCTATCCTTTGGAGGGTGGTAAAGGAAGTAAGAAATATACTTTTTGCACCATATACAAGGTAAAAAGCTAGAGTTTCACCTTCATTTATTTTCCTTCCCCTTGTTGGCTTGGCAGGTGGAAGGAAGTAAGGCATGACAACACAGTAACATGGTTAGCTTTCTGGAACGACCCTATTAATCCAAGAGAATTCAAATACGTTTTCCTAGCAGCCAGTAGTTCCTTGAAAGGGCAAAGTGATAAGGAGAAGTATGAGAAAGCTAGGCGTTTGAAGGTACAATGAAGCAATTGGCAAGTTGATTTTTTTTTTTGTACTGGTTGCACATGATGATTGGTGGCTATAAACTGTCTCTCGGTTGCAGGATTACATAGAAGGCATTAGATCTGCATATACAAAAGATTTTGCAAGTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAGGTATCAGGAACACTAGTTTATTTTTATTTTTCCTGGATACTTAACTAGGGGCAGCGTAGATCTCAAAAGAGTCTGAAAATTCCAAAACTGGTTGTCAATGCTGGTTTAGTATCTCTTTCAAAAATATTTTTATTAGCATAGAAGCAGGAAGTTATGGCAATATATGTTGCTCCTCGCTTTCCAATTCATAAGTTTACCAAGAGGTATAAAACCATAAAGCAAAAAATAATTTAAGCAGAGATCAATTTATCCAAAAAAACTGAAGGTGAGAGATCAGTTTTCCAGTTTTTTATATTTTTTTTGTATGAAGAACCCATGCTTTTGCCTGCAGAGGCATGGGACAATGCAAAGGTTGCGCAAGTGTTCTTAGTTATATCAATGTGATGCAGGATGATGACGAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAGGTATTGTGGTTTTAAAAGCTAAATTGGAAGAGCTCTCGGAAATTTACTCCTCTACAGGTTCTTAGTTTTGTGCTATTAATTGCAATGCATATAATTGACTTTGCTTTCTTCAGTTCGATTTTCTTGGTAAAGATTCTATCAGGTACCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTTAAAGCTATTCAACAGTTCCGAAGTGGTTAGTAAATGCTGCTTTTGTGCTAGAATATGTGCTTTTTTTAAAAAAAAATCCGTTCTTGAAATACATGGATACACTTGATTTCAGGAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTT</genome_strand>
        <mrna_strand>TTGAGAGAAGAGAAACTTAAGCAAGAAGAGAAATACATGTGGGCTATTGTGGATGGTGTTAAAGAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGAACTTTCGGGTTGAACCACCTGGATTGTTCCGAGGCCGTGGGGAACATCCAAAG....................................................................................................................................ATGGGAAAGCTAAAGAGACGGATCCGGCCAAATGATATCACAATAAATATTGGAAAGGGTGTTCCAGTACCGGAGTGCCCCATCCCTGGCCAAAG..........................................................................................................................................................GTGGAAGGAAGTAAGGCATGACAACACAGTAACATGGTTAGCTTTCTGGAACGACCCTATTAATCCAAGAGAATTCAAATACGTTTTCCTAGCAGCCAGTAGTTCCTTGAAAGGGCAAAGTGATAAGGAGAAGTATGAGAAAGCTAGGCGTTTGAAG........................................................................................GATTACATAGAAGGCATTAGATCTGCATATACAAAAGATTTTGCAAGTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACGAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAG.................................................................................................................TTCGATTTTCTTGGTAAAGATTCTATCAGGTACCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTT-AAGCTATTC-ACAGTTCCGAAGTG.......................................................................................G-AAAAAGGGCAGTGACGATCTTTTTGAC-AGCTTGATACGAGTAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538397" ref_strand="+" ref_description="SGN-E538397 [TUS-57-J4]">
      <seq>gagaatttcatgaatgactggagaaaaatacttggaaaaaaccatgtcattcaaaagttagaagagtgtgattttaccccaatatatgagtggcatcagagtgagaaggagaagaagaagcaaatgagttcagaagagaagaaggcattgagagaagagaaacttaagcaagaagagaaatacatgtgggctattgtggatggtgttaaagagaaggttgggaactttcgggttgaaccacctggattgttccgaggccgtggggaacatccaaagatgggaaagctaaagagacggatccggccaaatgatatcacaataaatattggaaagggtgttccagtaccggagtgccccatccctggccaaaggtggaaggaagtaaggcatgacaacacagtaacatggttagctttctggaacgaccctattaatccaagagaattcaaatacgttttcctagcagccagtagttccttgaaagggcaaagtgataaggagaagtatgagaaagctaggcgtttgaaggattacatagaaggcattagatctgcatatacaaaagattttgcaagtaaagatcctgtgaagcgtcagattgcagttgcaacttatcttatcgataaattagctctgagggcagggaatgagaaggatgatgacgaagctgatacagttggttgctgtactttgaaagtagagaatgtagagccagtacctccaaatattttgaaggtatttgtgggtttaaaagctaaattggaagagctctcggaaatttactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="49335" stop="44339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49035" g_stop="48901" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48900" i_stop="47592" i_length="1309">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47591" g_stop="47511" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="216" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47510" i_stop="45971" i_length="1540">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45970" g_stop="45911" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="276" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45910" i_stop="45779" i_length="132">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45778" g_stop="45684" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="371" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45683" i_stop="45530" i_length="154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45529" g_stop="45373" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="528" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45372" i_stop="45285" i_length="88">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45284" g_stop="45159" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="654" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45158" i_stop="44770" i_length="389">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44769" g_stop="44639" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="786" r_length="132" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E538397" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49035" e_stop="48901"/>
          <exon e_start="47591" e_stop="47511"/>
          <exon e_start="45970" e_stop="45911"/>
          <exon e_start="45778" e_stop="45684"/>
          <exon e_start="45529" e_stop="45373"/>
          <exon e_start="45284" e_stop="45159"/>
          <exon e_start="44769" e_stop="44639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATTTCATGAATGACTGGAGAAAAATACTTGGAAAAAACCATGTCATTCAAAAGTTAGAAGAGTGTGATTTTACCCCAATATATGAGTGGCATCAGAGTGAGAAGGAGAAGAAGAAGCAAATGAGTTCAGAAGTAAGTGAATTAATAAATATTTAAGTTACAAAATATGGTAATTTGTAGTTATCTTGTCACTTAAACCGTGGTTAATTTCATTTTGCTTATACTTTTCCATCTTCTAATCACTTGTTAGCTTTCTTTAGGAGTTGCCGAACTGTTAACTCTAAAAAAATTTCTGATCTTTCACTTGTGACGAAGTTCTGAATTTGTTTGGCAGTTGTATGATCTCACTTGGTAGAGCCAATATATCCCAGTCACCTTTGGACTAAAAAACATCTCTGCTTACTGTGTAGAAATTCATTGATTTCCTGTGTGGGGGATATGTTACTTGCTAATCTTATGGTAGTTAGTTGTTTGGCAGGTGATCTTTTGTGTAGTCATTTGATGCATACATTTGTCTGACCAGCATGAAACTGGCATTTCTGTCAACCTTATAAAATAGATTTAGCTACATTTTCTTAATTGAGAAGATTTGCAGAGACTACTTCATAGGATATTATCTAAGACATCCTTACAATGCAAGAGATTCAGCCACAGTATTGTTTTATATACAACCTCTACCTCTTAGTATATGTTGCTTCGACTCGCCAATAGTGTTGCTGCACTAGTGTCCCACCCTTCAAATATGTACTGCTTTTGAAAGATCCGACATGTACATGTAAACATTTTTGAAGAGTCCGAGTGACATAGCTCTTCAGTGATGTTAATGCTGGATAATCATAGAACTTCATTTTTCATAGCAAGTGGATTTAACCATTACGTTTAGTAGAAGTCTAGTTAGCAATTTTATGAGGGAACAAGTTCCCTTCATTTTGATGGTGGAAGTGTTTTTAGCTCACTTAAAAAGGACTCATTTGGGAAATGATTTGTCCTAATTTTTTTTGTTTTCTCTGGCTGCTTGTCCCTTTCTCCTTTTGTTTTTAATTCTTTTTTCTTCATGGATGGATCGGGGGGGGGGGCACTTTCCAGAATATTGGTTTTGTTTTCCACTGTTGCCGTCAATTAGTTGAAGCTTGGATTGAATTTGGTTGATGAATATATCTGTGTATGATGATAGCAACCACTTTCAGCTTGACAACATTCTTAAACAAACTTGCATGTAGAGTTTCAAAAAAAATATGTCTTCCACTATCGCAAACTGATCACTTATAAGATGTTCGGCATTTTGTCAAATTGGCTGTTATTTTACCTAGTCTCTGACATTTTTGATTCTCAGTCTGATCAAGATGGGACCTATGTTTGTGGTTTAATCTAATAGCACAGTACATAAAGCTCGTAGATGCTTCAAGGTTTTCATCTAAAACATTGCTTACCTATTTTGCAGGAGAAGAAGGCATTGAGAGAAGAGAAACTTAAGCAAGAAGAGAAATACATGTGGGCTATTGTGGATGGTGTTAAAGAGAAGGTTTGGTTCTGTTTAGCTTTAGCTTTTAGCTTTCATACATGGTACTTTAAGAGAAATTATGTTGTGCTATCTTCTAAATTTATCCCAATGGGATTATAAGATGGTCTTACATCTTTTTTCTCTTAAAAAAGGTCTTATGTCTTCTTTTCTAGGGGATGTTTCTTCTGTCTTTTTCAACATCATCTGCTGTTATTGTGGTAATTTCATCTTATTCACAATGCATTTATCCAGCTAGCACAATTTTTTGGTTGGAGTTGTCCAAAATTCTTTTGTGTTTCATTTTTCTAATCTGGTGCTATTCTTGTAATGATTTCCTCTTGACTGATCTTAAACAACATTGGGGAGCTTTATTTCCTTTATGGCTGTGAATAGTTTTTAGAGAACATATTCTCTTCATCTTTGGAATTTACTTTCCTCTGATTAAAGATTCTTTTTCTTATTGGGAGTAATTAAGTTCTTTTTAAAATTGCATTTAAATGGTGTTAAAAGGTTTTCAAAGTAGATTTTTATGAATACCTAAATGTATTTCCCTGTTATATTTCCCTTCCACGAACATTCCATTTTCAGTTTCTGTAATTCTGTTGAGATTTTTGATAGGGCCTGATGTGTTTTTTGCATCTTAATAGTGATTGTTCGAATTGAACCGTACTTCCTGCTCTTATTTGATGGTTGGTTTTCATGGGATGACTATTCTAGGCAGAATTCATCAGCTGTAAAGAGAAAAAAATTGTCTTCCCATTGTCATGTATTGCTGAAGTACATGGACTTGATTTAAGAAAGAAAATAGAAGTGGAAACATTATCAAAAAGATAAGTGGAAAGACGAGCAAAAAGAGTTAGAATGTTCATTCCTGAGTAAGAACAAGGAATGAGGTTCATTAACTTGGATGAAAGGGCTTTCCCTAGAATGAAATGCCCTCTTTTTTACAACTCCAAATTGAAGAATGGACGTAACCGAATGATGGTTTGTTGAATCTTACGTTAGAAATATCTCTTCTTTTATATGTATGTGTGGGGGAAGAGAGGATAGTCTTGTTTTTGGAACAGAAGGCTTCTAGCTCTGGTCTGATGGAGCAAGTTTTGTTTGTTATTGTTAGTGATTTGTGTACTTCTGAGCTCTTGGGGAGTTGGATCGAATTTGCAGCCGTGTTGATAGGTGACGATCTCGAAAATAAATTGATATAATGAAGATGTTGTAATCCATTGTTACATATTGTTTTCACATGTGTTTGCTGATTGCTTCATAGTCCTTTTCTGGATGTTTCTTTGTTTTCATTATTTAGCTGTTTCTTGTGCCATCAGTACATCCTCTTTTTGGTATTTTTTTGTTTCTTAGCCATATGATATTGAGCCCCCTAGCTTTATCTTAACTCTCAAACTTGAGCTTCCCCTTCCTTTTGGTGATGTGCCAACATGGTGTTCTTTATCGTGTTTAACCTACCTATGTATCCACCCCTAAAATCAGAAAGGCCCATAGTATTCGGAGCATGGAAAACTTATAAACCAACTGCGAAATGGTCTGACCATTTCGTTATGTGCAGGTTGGGAACTTTCGGGTTGAACCACCTGGATTGTTCCGAGGCCGTGGGGAACATCCAAAGGTATGTTGGCCTTCTATTTATTGGGTTAAACTGCCAAGAACATTCTACTATGTGCAGAATGGTGTATTATTTATGTTTAGGTACTTCCATGTTTCGCTGTGGTATTGATGGATGTTGCTTTGAATGGTATAGATGGGAAAGCTAAAGAGACGGATCCGGCCAAATGATATCACAATAAATATTGGAAAGGGTGTTCCAGTACCGGAGTGCCCCATCCCTGGCCAAAGGTTCTCTTCATTTTCTCTGTTATCCTTTTGAAAGAATTGTCTATCCTTTGGAGGGTGGTAAAGGAAGTAAGAAATATACTTTTTGCACCATATACAAGGTAAAAAGCTAGAGTTTCACCTTCATTTATTTTCCTTCCCCTTGTTGGCTTGGCAGGTGGAAGGAAGTAAGGCATGACAACACAGTAACATGGTTAGCTTTCTGGAACGACCCTATTAATCCAAGAGAATTCAAATACGTTTTCCTAGCAGCCAGTAGTTCCTTGAAAGGGCAAAGTGATAAGGAGAAGTATGAGAAAGCTAGGCGTTTGAAGGTACAATGAAGCAATTGGCAAGTTGATTTTTTTTTTTGTACTGGTTGCACATGATGATTGGTGGCTATAAACTGTCTCTCGGTTGCAGGATTACATAGAAGGCATTAGATCTGCATATACAAAAGATTTTGCAAGTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAGGTATCAGGAACACTAGTTTATTTTTATTTTTCCTGGATACTTAACTAGGGGCAGCGTAGATCTCAAAAGAGTCTGAAAATTCCAAAACTGGTTGTCAATGCTGGTTTAGTATCTCTTTCAAAAATATTTTTATTAGCATAGAAGCAGGAAGTTATGGCAATATATGTTGCTCCTCGCTTTCCAATTCATAAGTTTACCAAGAGGTATAAAACCATAAAGCAAAAAATAATTTAAGCAGAGATCAATTTATCCAAAAAAACTGAAGGTGAGAGATCAGTTTTCCAGTTTTTTATATTTTTTTTGTATGAAGAACCCATGCTTTTGCCTGCAGAGGCATGGGACAATGCAAAGGTTGCGCAAGTGTTCTTAGTTATATCAATGTGATGCAGGATGATGACGAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAGGTA-TTGTGGTTTTAAAAGCTAAATTGGAAGAGCTCTCGGAAATTTACTCC</genome_strand>
        <mrna_strand>GAGAATTTCATGAATGACTGGAGAAAAATACTTGGAAAAAACCATGTCATTCAAAAGTTAGAAGAGTGTGATTTTACCCCAATATATGAGTGGCATCAGAGTGAGAAGGAGAAGAAGAAGCAAATGAGTTCAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGAAGGCATTGAGAGAAGAGAAACTTAAGCAAGAAGAGAAATACATGTGGGCTATTGTGGATGGTGTTAAAGAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGAACTTTCGGGTTGAACCACCTGGATTGTTCCGAGGCCGTGGGGAACATCCAAAG....................................................................................................................................ATGGGAAAGCTAAAGAGACGGATCCGGCCAAATGATATCACAATAAATATTGGAAAGGGTGTTCCAGTACCGGAGTGCCCCATCCCTGGCCAAAG..........................................................................................................................................................GTGGAAGGAAGTAAGGCATGACAACACAGTAACATGGTTAGCTTTCTGGAACGACCCTATTAATCCAAGAGAATTCAAATACGTTTTCCTAGCAGCCAGTAGTTCCTTGAAAGGGCAAAGTGATAAGGAGAAGTATGAGAAAGCTAGGCGTTTGAAG........................................................................................GATTACATAGAAGGCATTAGATCTGCATATACAAAAGATTTTGCAAGTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACGAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAGGTATTTGTGGGTTTAAAAGCTAAATTGGAAGAGCTCTCGGAAATTTACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271710" ref_strand="+" ref_description="SGN-E271710 [cLEM-23-D4]">
      <seq>agcaaatgagttcagaagagaagaaggcattgagagaagagaaacttaagcaagaagagaaatacatgtgggctattgtggatggtgttaaagagaaggttgggaactttcgggttgaaccacctggattgttccgaggccgtggggaacatccaaagatgggaaagctaaagagacggatccggccaaatgatatcacaataaatattggaaagggtgttccagtaccggagtgccccatccctggccaaaggtggaaggaagtaaggcatgacaacacagtaacatggttagctttctggaacgaccctattaatccaagagaattcaaatacgttttcctagcagccagtagttccttgaaagggcaaagtgataaggagaagtatgagaaagctaggcgtttgaaggattacatagaaggcattagatctgcatatacaaaagattttgcaagtaaagatcctgtgaagcgtcagattgcagttgcaacttatcttatcgataaattagctctgagggcagggaatgagaaggatgatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="47899" stop="44850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47591" g_stop="47511" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="98" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47510" i_stop="45971" i_length="1540">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45970" g_stop="45911" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="158" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45910" i_stop="45779" i_length="132">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45778" g_stop="45684" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="253" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45683" i_stop="45530" i_length="154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45529" g_stop="45373" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="410" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45372" i_stop="45285" i_length="88">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45284" g_stop="45159" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="536" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E271710" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47591" e_stop="47511"/>
          <exon e_start="45970" e_stop="45911"/>
          <exon e_start="45778" e_stop="45684"/>
          <exon e_start="45529" e_stop="45373"/>
          <exon e_start="45284" e_stop="45159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGAAGGCATTGAGAGAAGAGAAACTTAAGCAAGAAGAGAAATACATGTGGGCTATTGTGGATGGTGTTAAAGAGAAGGTTTGGTTCTGTTTAGCTTTAGCTTTTAGCTTTCATACATGGTACTTTAAGAGAAATTATGTTGTGCTATCTTCTAAATTTATCCCAATGGGATTATAAGATGGTCTTACATCTTTTTTCTCTTAAAAAAGGTCTTATGTCTTCTTTTCTAGGGGATGTTTCTTCTGTCTTTTTCAACATCATCTGCTGTTATTGTGGTAATTTCATCTTATTCACAATGCATTTATCCAGCTAGCACAATTTTTTGGTTGGAGTTGTCCAAAATTCTTTTGTGTTTCATTTTTCTAATCTGGTGCTATTCTTGTAATGATTTCCTCTTGACTGATCTTAAACAACATTGGGGAGCTTTATTTCCTTTATGGCTGTGAATAGTTTTTAGAGAACATATTCTCTTCATCTTTGGAATTTACTTTCCTCTGATTAAAGATTCTTTTTCTTATTGGGAGTAATTAAGTTCTTTTTAAAATTGCATTTAAATGGTGTTAAAAGGTTTTCAAAGTAGATTTTTATGAATACCTAAATGTATTTCCCTGTTATATTTCCCTTCCACGAACATTCCATTTTCAGTTTCTGTAATTCTGTTGAGATTTTTGATAGGGCCTGATGTGTTTTTTGCATCTTAATAGTGATTGTTCGAATTGAACCGTACTTCCTGCTCTTATTTGATGGTTGGTTTTCATGGGATGACTATTCTAGGCAGAATTCATCAGCTGTAAAGAGAAAAAAATTGTCTTCCCATTGTCATGTATTGCTGAAGTACATGGACTTGATTTAAGAAAGAAAATAGAAGTGGAAACATTATCAAAAAGATAAGTGGAAAGACGAGCAAAAAGAGTTAGAATGTTCATTCCTGAGTAAGAACAAGGAATGAGGTTCATTAACTTGGATGAAAGGGCTTTCCCTAGAATGAAATGCCCTCTTTTTTACAACTCCAAATTGAAGAATGGACGTAACCGAATGATGGTTTGTTGAATCTTACGTTAGAAATATCTCTTCTTTTATATGTATGTGTGGGGGAAGAGAGGATAGTCTTGTTTTTGGAACAGAAGGCTTCTAGCTCTGGTCTGATGGAGCAAGTTTTGTTTGTTATTGTTAGTGATTTGTGTACTTCTGAGCTCTTGGGGAGTTGGATCGAATTTGCAGCCGTGTTGATAGGTGACGATCTCGAAAATAAATTGATATAATGAAGATGTTGTAATCCATTGTTACATATTGTTTTCACATGTGTTTGCTGATTGCTTCATAGTCCTTTTCTGGATGTTTCTTTGTTTTCATTATTTAGCTGTTTCTTGTGCCATCAGTACATCCTCTTTTTGGTATTTTTTTGTTTCTTAGCCATATGATATTGAGCCCCCTAGCTTTATCTTAACTCTCAAACTTGAGCTTCCCCTTCCTTTTGGTGATGTGCCAACATGGTGTTCTTTATCGTGTTTAACCTACCTATGTATCCACCCCTAAAATCAGAAAGGCCCATAGTATTCGGAGCATGGAAAACTTATAAACCAACTGCGAAATGGTCTGACCATTTCGTTATGTGCAGGTTGGGAACTTTCGGGTTGAACCACCTGGATTGTTCCGAGGCCGTGGGGAACATCCAAAGGTATGTTGGCCTTCTATTTATTGGGTTAAACTGCCAAGAACATTCTACTATGTGCAGAATGGTGTATTATTTATGTTTAGGTACTTCCATGTTTCGCTGTGGTATTGATGGATGTTGCTTTGAATGGTATAGATGGGAAAGCTAAAGAGACGGATCCGGCCAAATGATATCACAATAAATATTGGAAAGGGTGTTCCAGTACCGGAGTGCCCCATCCCTGGCCAAAGGTTCTCTTCATTTTCTCTGTTATCCTTTTGAAAGAATTGTCTATCCTTTGGAGGGTGGTAAAGGAAGTAAGAAATATACTTTTTGCACCATATACAAGGTAAAAAGCTAGAGTTTCACCTTCATTTATTTTCCTTCCCCTTGTTGGCTTGGCAGGTGGAAGGAAGTAAGGCATGACAACACAGTAACATGGTTAGCTTTCTGGAACGACCCTATTAATCCAAGAGAATTCAAATACGTTTTCCTAGCAGCCAGTAGTTCCTTGAAAGGGCAAAGTGATAAGGAGAAGTATGAGAAAGCTAGGCGTTTGAAGGTACAATGAAGCAATTGGCAAGTTGATTTTTTTTTTTGTACTGGTTGCACATGATGATTGGTGGCTATAAACTGTCTCTCGGTTGCAGGATTACATAGAAGGCATTAGATCTGCATATACAAAAGATTTTGCAAGTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAG</genome_strand>
        <mrna_strand>GAGAAGAAGGCATTGAGAGAAGAGAAACTTAAGCAAGAAGAGAAATACATGTGGGCTATTGTGGATGGTGTTAAAGAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGAACTTTCGGGTTGAACCACCTGGATTGTTCCGAGGCCGTGGGGAACATCCAAAG....................................................................................................................................ATGGGAAAGCTAAAGAGACGGATCCGGCCAAATGATATCACAATAAATATTGGAAAGGGTGTTCCAGTACCGGAGTGCCCCATCCCTGGCCAAAG..........................................................................................................................................................GTGGAAGGAAGTAAGGCATGACAACACAGTAACATGGTTAGCTTTCTGGAACGACCCTATTAATCCAAGAGAATTCAAATACGTTTTCCTAGCAGCCAGTAGTTCCTTGAAAGGGCAAAGTGATAAGGAGAAGTATGAGAAAGCTAGGCGTTTGAAG........................................................................................GATTACATAGAAGGCATTAGATCTGCATATACAAAAGATTTTGCAAGTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327513" ref_strand="+" ref_description="SGN-E327513 [cTOC-20-A7]">
      <seq>gaaagcccgtggatcttactccagagcaggaagaggtcgcaacaatgtatgccgtgatgttagacactgaatacatgactaaagagcagttcaaagagaatttcatgaatgactggagaaaaatacttggaaaaaaccatgtcattcaaaagttagaagagtgtgattttaccccaatatatgagtggcatcagagtgagaaggagaagaagaagcaaatgagttcagaagagaagaaggcattgagagaagagaaacttaagcaagaagagaaatacatgtgggctattgtggatggtgttaaagagaaggttgggaactttcgggttgaaccacctggattgttccgaggccgtggggaacatccaaagatgggaaagctaaagagacggatccggccaaatgatatcacaataaatattggaaagggtgttccagtaccggagtgccccatccctggccaaaggtggaaggaagtaaggcatgacaacacagtaacatggttagctttctggaacgaccctattaatccaagagaattcaaatacgttttcctagcagccagtagttccttgaaagggcaaagtgataaggagaagtatgagaaagctaggcgtttgaanggatacatagaaggcattagatctgcatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="49508" stop="45044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49208" g_stop="49174" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49173" i_stop="49096" i_length="78">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49095" g_stop="48901" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="230" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48900" i_stop="47592" i_length="1309">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47591" g_stop="47511" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="311" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47510" i_stop="45971" i_length="1540">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45970" g_stop="45911" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="371" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45910" i_stop="45779" i_length="132">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45778" g_stop="45684" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="466" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45683" i_stop="45530" i_length="154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45529" g_stop="45373" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="623" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45372" i_stop="45285" i_length="88">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45284" g_stop="45254" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="654" r_length="31" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E327513" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49208" e_stop="49174"/>
          <exon e_start="49095" e_stop="48901"/>
          <exon e_start="47591" e_stop="47511"/>
          <exon e_start="45970" e_stop="45911"/>
          <exon e_start="45778" e_stop="45684"/>
          <exon e_start="45529" e_stop="45373"/>
          <exon e_start="45284" e_stop="45254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCCCGTGGATCTTACTCCAGAGCAGGAAGAGGTCTCAATCTGTCTCTGATTGTATGTGTCTCATTCATGTCTTTGTGATTTTATTCTTAGTACAGCAATTTCTCTGCAGGTCGCAACAATGTATGCCGTGATGTTAGACACTGAATACATGACTAAAGAGCAGTTCAAAGAGAATTTCATGAATGACTGGAGAAAAATACTTGGAAAAAACCATGTCATTCAAAAGTTAGAAGAGTGTGATTTTACCCCAATATATGAGTGGCATCAGAGTGAGAAGGAGAAGAAGAAGCAAATGAGTTCAGAAGTAAGTGAATTAATAAATATTTAAGTTACAAAATATGGTAATTTGTAGTTATCTTGTCACTTAAACCGTGGTTAATTTCATTTTGCTTATACTTTTCCATCTTCTAATCACTTGTTAGCTTTCTTTAGGAGTTGCCGAACTGTTAACTCTAAAAAAATTTCTGATCTTTCACTTGTGACGAAGTTCTGAATTTGTTTGGCAGTTGTATGATCTCACTTGGTAGAGCCAATATATCCCAGTCACCTTTGGACTAAAAAACATCTCTGCTTACTGTGTAGAAATTCATTGATTTCCTGTGTGGGGGATATGTTACTTGCTAATCTTATGGTAGTTAGTTGTTTGGCAGGTGATCTTTTGTGTAGTCATTTGATGCATACATTTGTCTGACCAGCATGAAACTGGCATTTCTGTCAACCTTATAAAATAGATTTAGCTACATTTTCTTAATTGAGAAGATTTGCAGAGACTACTTCATAGGATATTATCTAAGACATCCTTACAATGCAAGAGATTCAGCCACAGTATTGTTTTATATACAACCTCTACCTCTTAGTATATGTTGCTTCGACTCGCCAATAGTGTTGCTGCACTAGTGTCCCACCCTTCAAATATGTACTGCTTTTGAAAGATCCGACATGTACATGTAAACATTTTTGAAGAGTCCGAGTGACATAGCTCTTCAGTGATGTTAATGCTGGATAATCATAGAACTTCATTTTTCATAGCAAGTGGATTTAACCATTACGTTTAGTAGAAGTCTAGTTAGCAATTTTATGAGGGAACAAGTTCCCTTCATTTTGATGGTGGAAGTGTTTTTAGCTCACTTAAAAAGGACTCATTTGGGAAATGATTTGTCCTAATTTTTTTTGTTTTCTCTGGCTGCTTGTCCCTTTCTCCTTTTGTTTTTAATTCTTTTTTCTTCATGGATGGATCGGGGGGGGGGGCACTTTCCAGAATATTGGTTTTGTTTTCCACTGTTGCCGTCAATTAGTTGAAGCTTGGATTGAATTTGGTTGATGAATATATCTGTGTATGATGATAGCAACCACTTTCAGCTTGACAACATTCTTAAACAAACTTGCATGTAGAGTTTCAAAAAAAATATGTCTTCCACTATCGCAAACTGATCACTTATAAGATGTTCGGCATTTTGTCAAATTGGCTGTTATTTTACCTAGTCTCTGACATTTTTGATTCTCAGTCTGATCAAGATGGGACCTATGTTTGTGGTTTAATCTAATAGCACAGTACATAAAGCTCGTAGATGCTTCAAGGTTTTCATCTAAAACATTGCTTACCTATTTTGCAGGAGAAGAAGGCATTGAGAGAAGAGAAACTTAAGCAAGAAGAGAAATACATGTGGGCTATTGTGGATGGTGTTAAAGAGAAGGTTTGGTTCTGTTTAGCTTTAGCTTTTAGCTTTCATACATGGTACTTTAAGAGAAATTATGTTGTGCTATCTTCTAAATTTATCCCAATGGGATTATAAGATGGTCTTACATCTTTTTTCTCTTAAAAAAGGTCTTATGTCTTCTTTTCTAGGGGATGTTTCTTCTGTCTTTTTCAACATCATCTGCTGTTATTGTGGTAATTTCATCTTATTCACAATGCATTTATCCAGCTAGCACAATTTTTTGGTTGGAGTTGTCCAAAATTCTTTTGTGTTTCATTTTTCTAATCTGGTGCTATTCTTGTAATGATTTCCTCTTGACTGATCTTAAACAACATTGGGGAGCTTTATTTCCTTTATGGCTGTGAATAGTTTTTAGAGAACATATTCTCTTCATCTTTGGAATTTACTTTCCTCTGATTAAAGATTCTTTTTCTTATTGGGAGTAATTAAGTTCTTTTTAAAATTGCATTTAAATGGTGTTAAAAGGTTTTCAAAGTAGATTTTTATGAATACCTAAATGTATTTCCCTGTTATATTTCCCTTCCACGAACATTCCATTTTCAGTTTCTGTAATTCTGTTGAGATTTTTGATAGGGCCTGATGTGTTTTTTGCATCTTAATAGTGATTGTTCGAATTGAACCGTACTTCCTGCTCTTATTTGATGGTTGGTTTTCATGGGATGACTATTCTAGGCAGAATTCATCAGCTGTAAAGAGAAAAAAATTGTCTTCCCATTGTCATGTATTGCTGAAGTACATGGACTTGATTTAAGAAAGAAAATAGAAGTGGAAACATTATCAAAAAGATAAGTGGAAAGACGAGCAAAAAGAGTTAGAATGTTCATTCCTGAGTAAGAACAAGGAATGAGGTTCATTAACTTGGATGAAAGGGCTTTCCCTAGAATGAAATGCCCTCTTTTTTACAACTCCAAATTGAAGAATGGACGTAACCGAATGATGGTTTGTTGAATCTTACGTTAGAAATATCTCTTCTTTTATATGTATGTGTGGGGGAAGAGAGGATAGTCTTGTTTTTGGAACAGAAGGCTTCTAGCTCTGGTCTGATGGAGCAAGTTTTGTTTGTTATTGTTAGTGATTTGTGTACTTCTGAGCTCTTGGGGAGTTGGATCGAATTTGCAGCCGTGTTGATAGGTGACGATCTCGAAAATAAATTGATATAATGAAGATGTTGTAATCCATTGTTACATATTGTTTTCACATGTGTTTGCTGATTGCTTCATAGTCCTTTTCTGGATGTTTCTTTGTTTTCATTATTTAGCTGTTTCTTGTGCCATCAGTACATCCTCTTTTTGGTATTTTTTTGTTTCTTAGCCATATGATATTGAGCCCCCTAGCTTTATCTTAACTCTCAAACTTGAGCTTCCCCTTCCTTTTGGTGATGTGCCAACATGGTGTTCTTTATCGTGTTTAACCTACCTATGTATCCACCCCTAAAATCAGAAAGGCCCATAGTATTCGGAGCATGGAAAACTTATAAACCAACTGCGAAATGGTCTGACCATTTCGTTATGTGCAGGTTGGGAACTTTCGGGTTGAACCACCTGGATTGTTCCGAGGCCGTGGGGAACATCCAAAGGTATGTTGGCCTTCTATTTATTGGGTTAAACTGCCAAGAACATTCTACTATGTGCAGAATGGTGTATTATTTATGTTTAGGTACTTCCATGTTTCGCTGTGGTATTGATGGATGTTGCTTTGAATGGTATAGATGGGAAAGCTAAAGAGACGGATCCGGCCAAATGATATCACAATAAATATTGGAAAGGGTGTTCCAGTACCGGAGTGCCCCATCCCTGGCCAAAGGTTCTCTTCATTTTCTCTGTTATCCTTTTGAAAGAATTGTCTATCCTTTGGAGGGTGGTAAAGGAAGTAAGAAATATACTTTTTGCACCATATACAAGGTAAAAAGCTAGAGTTTCACCTTCATTTATTTTCCTTCCCCTTGTTGGCTTGGCAGGTGGAAGGAAGTAAGGCATGACAACACAGTAACATGGTTAGCTTTCTGGAACGACCCTATTAATCCAAGAGAATTCAAATACGTTTTCCTAGCAGCCAGTAGTTCCTTGAAAGGGCAAAGTGATAAGGAGAAGTATGAGAAAGCTAGGCGTTTGAAGGTACAATGAAGCAATTGGCAAGTTGATTTTTTTTTTTGTACTGGTTGCACATGATGATTGGTGGCTATAAACTGTCTCTCGGTTGCAGGATTACATAGAAGGCATTAGATCTGCATATA</genome_strand>
        <mrna_strand>GAAAGCCCGTGGATCTTACTCCAGAGCAGGAAGAG..............................................................................GTCGCAACAATGTATGCCGTGATGTTAGACACTGAATACATGACTAAAGAGCAGTTCAAAGAGAATTTCATGAATGACTGGAGAAAAATACTTGGAAAAAACCATGTCATTCAAAAGTTAGAAGAGTGTGATTTTACCCCAATATATGAGTGGCATCAGAGTGAGAAGGAGAAGAAGAAGCAAATGAGTTCAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGAAGGCATTGAGAGAAGAGAAACTTAAGCAAGAAGAGAAATACATGTGGGCTATTGTGGATGGTGTTAAAGAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGAACTTTCGGGTTGAACCACCTGGATTGTTCCGAGGCCGTGGGGAACATCCAAAG....................................................................................................................................ATGGGAAAGCTAAAGAGACGGATCCGGCCAAATGATATCACAATAAATATTGGAAAGGGTGTTCCAGTACCGGAGTGCCCCATCCCTGGCCAAAG..........................................................................................................................................................GTGGAAGGAAGTAAGGCATGACAACACAGTAACATGGTTAGCTTTCTGGAACGACCCTATTAATCCAAGAGAATTCAAATACGTTTTCCTAGCAGCCAGTAGTTCCTTGAAAGGGCAAAGTGATAAGGAGAAGTATGAGAAAGCTAGGCGTTTGAAN........................................................................................GGATACATAGAAGGCATTAGATCTGCATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201883" ref_strand="+" ref_description="SGN-E201883 [cLEC-18-C23]">
      <seq>aaccgcctttcaaaactgaaaagaagacagaggacgatgacgacgatgttcctatatctcagaggataaaaaaggcagtagattcagcttcagcttcagctagtaaagtgtcatatgtgaagaaagcaactaaagttgtttcgtcatcgatgaagaaaacaaagaagaagttgaaaaaacccaagtactctaagtcgtcaaaactgcagccaagctctggtgatgggcaaaaatggactacactggaacacaatggtgtgatttttccacctccatacaaacctcatggggttaagatgctctacaagggaaagcccgtggatcttactccagagcaggaagaggtcgcaacaatgtatgccgtgatgttagacactgaatacatgactaaagagcagttcaaagagaatttcatgaatgactggagaaaaatacttggaaaaaaccatgtcattcaaaagttagaagagtgtgattttaccccaatatatgagtggcatcagagtgagaaggagaagaagaagcaaatgagttcagaagagaagaaggcattgagagaagagaaacttaagcaagaagagaaatacatgtgggctattgtggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="49817" stop="47226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49517" g_stop="49174" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49173" i_stop="49096" i_length="78">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49095" g_stop="48901" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="539" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48900" i_stop="47592" i_length="1309">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47591" g_stop="47526" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="605" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E201883" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49517" e_stop="49174"/>
          <exon e_start="49095" e_stop="48901"/>
          <exon e_start="47591" e_stop="47526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCGCCTTTCAAAACTGAAAAGAAGACAGAGGACGATGACGACGATGTTCCTATATCTCAGAGGATAAAAAAGGCAGTAGATTCAGCTTCAGCTTCAGCTAGTAAAGTGTCATATGTGAAGAAAGCAACTAAAGTTGTTTCGTCATCGATGAAGAAAACAAAGAAGAAGTTGAAAAAACCCAAGTACTCTAAGTCGTCAAAACTGCAGCCAAGCTCTGGTGATGGGCAAAAATGGACTACACTGGAACACAATGGTGTGATTTTTCCACCTCCATACAAACCTCATGGGGTTAAGATGCTCTACAAGGGAAAGCCCGTGGATCTTACTCCAGAGCAGGAAGAGGTCTCAATCTGTCTCTGATTGTATGTGTCTCATTCATGTCTTTGTGATTTTATTCTTAGTACAGCAATTTCTCTGCAGGTCGCAACAATGTATGCCGTGATGTTAGACACTGAATACATGACTAAAGAGCAGTTCAAAGAGAATTTCATGAATGACTGGAGAAAAATACTTGGAAAAAACCATGTCATTCAAAAGTTAGAAGAGTGTGATTTTACCCCAATATATGAGTGGCATCAGAGTGAGAAGGAGAAGAAGAAGCAAATGAGTTCAGAAGTAAGTGAATTAATAAATATTTAAGTTACAAAATATGGTAATTTGTAGTTATCTTGTCACTTAAACCGTGGTTAATTTCATTTTGCTTATACTTTTCCATCTTCTAATCACTTGTTAGCTTTCTTTAGGAGTTGCCGAACTGTTAACTCTAAAAAAATTTCTGATCTTTCACTTGTGACGAAGTTCTGAATTTGTTTGGCAGTTGTATGATCTCACTTGGTAGAGCCAATATATCCCAGTCACCTTTGGACTAAAAAACATCTCTGCTTACTGTGTAGAAATTCATTGATTTCCTGTGTGGGGGATATGTTACTTGCTAATCTTATGGTAGTTAGTTGTTTGGCAGGTGATCTTTTGTGTAGTCATTTGATGCATACATTTGTCTGACCAGCATGAAACTGGCATTTCTGTCAACCTTATAAAATAGATTTAGCTACATTTTCTTAATTGAGAAGATTTGCAGAGACTACTTCATAGGATATTATCTAAGACATCCTTACAATGCAAGAGATTCAGCCACAGTATTGTTTTATATACAACCTCTACCTCTTAGTATATGTTGCTTCGACTCGCCAATAGTGTTGCTGCACTAGTGTCCCACCCTTCAAATATGTACTGCTTTTGAAAGATCCGACATGTACATGTAAACATTTTTGAAGAGTCCGAGTGACATAGCTCTTCAGTGATGTTAATGCTGGATAATCATAGAACTTCATTTTTCATAGCAAGTGGATTTAACCATTACGTTTAGTAGAAGTCTAGTTAGCAATTTTATGAGGGAACAAGTTCCCTTCATTTTGATGGTGGAAGTGTTTTTAGCTCACTTAAAAAGGACTCATTTGGGAAATGATTTGTCCTAATTTTTTTTGTTTTCTCTGGCTGCTTGTCCCTTTCTCCTTTTGTTTTTAATTCTTTTTTCTTCATGGATGGATCGGGGGGGGGGGCACTTTCCAGAATATTGGTTTTGTTTTCCACTGTTGCCGTCAATTAGTTGAAGCTTGGATTGAATTTGGTTGATGAATATATCTGTGTATGATGATAGCAACCACTTTCAGCTTGACAACATTCTTAAACAAACTTGCATGTAGAGTTTCAAAAAAAATATGTCTTCCACTATCGCAAACTGATCACTTATAAGATGTTCGGCATTTTGTCAAATTGGCTGTTATTTTACCTAGTCTCTGACATTTTTGATTCTCAGTCTGATCAAGATGGGACCTATGTTTGTGGTTTAATCTAATAGCACAGTACATAAAGCTCGTAGATGCTTCAAGGTTTTCATCTAAAACATTGCTTACCTATTTTGCAGGAGAAGAAGGCATTGAGAGAAGAGAAACTTAAGCAAGAAGAGAAATACATGTGGGCTATTGTGGAT</genome_strand>
        <mrna_strand>AACCGCCTTTCAAAACTGAAAAGAAGACAGAGGACGATGACGACGATGTTCCTATATCTCAGAGGATAAAAAAGGCAGTAGATTCAGCTTCAGCTTCAGCTAGTAAAGTGTCATATGTGAAGAAAGCAACTAAAGTTGTTTCGTCATCGATGAAGAAAACAAAGAAGAAGTTGAAAAAACCCAAGTACTCTAAGTCGTCAAAACTGCAGCCAAGCTCTGGTGATGGGCAAAAATGGACTACACTGGAACACAATGGTGTGATTTTTCCACCTCCATACAAACCTCATGGGGTTAAGATGCTCTACAAGGGAAAGCCCGTGGATCTTACTCCAGAGCAGGAAGAG..............................................................................GTCGCAACAATGTATGCCGTGATGTTAGACACTGAATACATGACTAAAGAGCAGTTCAAAGAGAATTTCATGAATGACTGGAGAAAAATACTTGGAAAAAACCATGTCATTCAAAAGTTAGAAGAGTGTGATTTTACCCCAATATATGAGTGGCATCAGAGTGAGAAGGAGAAGAAGAAGCAAATGAGTTCAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGAAGGCATTGAGAGAAGAGAAACTTAAGCAAGAAGAGAAATACATGTGGGCTATTGTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279413" ref_strand="+" ref_description="SGN-E279413 [cLER-11-L8]">
      <seq>acctccatacaaacctcatggggttaagatgctctacaagggaaagcccgtggatcttactccagagcaggaagaggtcgcaacaatgtatgccgtgatgttagacactgaatacatgactaaagagcagttcaaagagaatttcatgaatgactggagaaaaatacttggaaaaaaccatgtcattcaaaagttagaagagtgtgattttaccccaatatatgagtggcatcagagtgagaaggagaagaaaaagcaaatgagttcagaagagaagaaggcattgagagaagagaaacttaagccagaagagaaatacatgtgggctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="49549" stop="47232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49249" g_stop="49174" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49173" i_stop="49096" i_length="78">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49095" g_stop="48901" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="271" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48900" i_stop="47592" i_length="1309">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47591" g_stop="47532" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="331" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E279413" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49249" e_stop="49174"/>
          <exon e_start="49095" e_stop="48901"/>
          <exon e_start="47591" e_stop="47532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCCATACAAACCTCATGGGGTTAAGATGCTCTACAAGGGAAAGCCCGTGGATCTTACTCCAGAGCAGGAAGAGGTCTCAATCTGTCTCTGATTGTATGTGTCTCATTCATGTCTTTGTGATTTTATTCTTAGTACAGCAATTTCTCTGCAGGTCGCAACAATGTATGCCGTGATGTTAGACACTGAATACATGACTAAAGAGCAGTTCAAAGAGAATTTCATGAATGACTGGAGAAAAATACTTGGAAAAAACCATGTCATTCAAAAGTTAGAAGAGTGTGATTTTACCCCAATATATGAGTGGCATCAGAGTGAGAAGGAGAAGAAGAAGCAAATGAGTTCAGAAGTAAGTGAATTAATAAATATTTAAGTTACAAAATATGGTAATTTGTAGTTATCTTGTCACTTAAACCGTGGTTAATTTCATTTTGCTTATACTTTTCCATCTTCTAATCACTTGTTAGCTTTCTTTAGGAGTTGCCGAACTGTTAACTCTAAAAAAATTTCTGATCTTTCACTTGTGACGAAGTTCTGAATTTGTTTGGCAGTTGTATGATCTCACTTGGTAGAGCCAATATATCCCAGTCACCTTTGGACTAAAAAACATCTCTGCTTACTGTGTAGAAATTCATTGATTTCCTGTGTGGGGGATATGTTACTTGCTAATCTTATGGTAGTTAGTTGTTTGGCAGGTGATCTTTTGTGTAGTCATTTGATGCATACATTTGTCTGACCAGCATGAAACTGGCATTTCTGTCAACCTTATAAAATAGATTTAGCTACATTTTCTTAATTGAGAAGATTTGCAGAGACTACTTCATAGGATATTATCTAAGACATCCTTACAATGCAAGAGATTCAGCCACAGTATTGTTTTATATACAACCTCTACCTCTTAGTATATGTTGCTTCGACTCGCCAATAGTGTTGCTGCACTAGTGTCCCACCCTTCAAATATGTACTGCTTTTGAAAGATCCGACATGTACATGTAAACATTTTTGAAGAGTCCGAGTGACATAGCTCTTCAGTGATGTTAATGCTGGATAATCATAGAACTTCATTTTTCATAGCAAGTGGATTTAACCATTACGTTTAGTAGAAGTCTAGTTAGCAATTTTATGAGGGAACAAGTTCCCTTCATTTTGATGGTGGAAGTGTTTTTAGCTCACTTAAAAAGGACTCATTTGGGAAATGATTTGTCCTAATTTTTTTTGTTTTCTCTGGCTGCTTGTCCCTTTCTCCTTTTGTTTTTAATTCTTTTTTCTTCATGGATGGATCGGGGGGGGGGGCACTTTCCAGAATATTGGTTTTGTTTTCCACTGTTGCCGTCAATTAGTTGAAGCTTGGATTGAATTTGGTTGATGAATATATCTGTGTATGATGATAGCAACCACTTTCAGCTTGACAACATTCTTAAACAAACTTGCATGTAGAGTTTCAAAAAAAATATGTCTTCCACTATCGCAAACTGATCACTTATAAGATGTTCGGCATTTTGTCAAATTGGCTGTTATTTTACCTAGTCTCTGACATTTTTGATTCTCAGTCTGATCAAGATGGGACCTATGTTTGTGGTTTAATCTAATAGCACAGTACATAAAGCTCGTAGATGCTTCAAGGTTTTCATCTAAAACATTGCTTACCTATTTTGCAGGAGAAGAAGGCATTGAGAGAAGAGAAACTTAAGCAAGAAGAGAAATACATGTGGGCTATT</genome_strand>
        <mrna_strand>ACCTCCATACAAACCTCATGGGGTTAAGATGCTCTACAAGGGAAAGCCCGTGGATCTTACTCCAGAGCAGGAAGAG..............................................................................GTCGCAACAATGTATGCCGTGATGTTAGACACTGAATACATGACTAAAGAGCAGTTCAAAGAGAATTTCATGAATGACTGGAGAAAAATACTTGGAAAAAACCATGTCATTCAAAAGTTAGAAGAGTGTGATTTTACCCCAATATATGAGTGGCATCAGAGTGAGAAGGAGAAGAAAAAGCAAATGAGTTCAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGAAGGCATTGAGAGAAGAGAAACTTAAGCCAGAAGAGAAATACATGTGGGCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247859" ref_strand="+" ref_description="SGN-E247859 [cLEF-47-A10]">
      <seq>gaagaagttaagcctaagattcgtcagaatggtttgccatcggcgacagtgggaagtaagagaccccctggtgaggtcaagtctgctgctcaggcttcagttaaaaagcctagactttctgatgcgtccacacctgtttctagtaagcaaccgcctttcaaaactgaaaagaagacagaggacgatgacgacgatgttcctatatctcagaggataaaaaaggcagtagattcagcttcagcttcagctagtaaagtgtcatatgtgaagaaagcaactaaagttgtttcgtcatcgatgaagaaaacaaagaagaagttgaaaaaacccaagtactctaagtcgtcaaaactgcagccaagctctggtgatgggcaaaaatggactacactggaacacaatggtgtgatttttccacctccatacaaacctcatggggttaagatgctctacaagggaaagcccgtggatcttactccagagcaggaagaggtcgcaacaatgtatgccgtgatgttagacactgaatacatgactaaagagcagttcaaagagaatttcatgaatgactggagaaaaatacttggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="49965" stop="48697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49665" g_stop="49174" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49173" i_stop="49096" i_length="78">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49095" g_stop="48997" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="591" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E247859" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49665" e_stop="49174"/>
          <exon e_start="49095" e_stop="48997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGTTAAGCCTAAGATTCGTCAGAATGGTTTGCCATCTGCGACAGTTTTAAGTAAGAGACCCCCTGGTGAGGTCAAGTCTGCTGCTCAGGCTTCAGTTAAAAAGCCTAGACTTTCTGATGCGTCCACACCTGTTTCTAGTAAGCAACCGCCTTTCAAAACTGAAAAGAAGACAGAGGACGATGACGACGATGTTCCTATATCTCAGAGGATAAAAAAGGCAGTAGATTCAGCTTCAGCTTCAGCTAGTAAAGTGTCATATGTGAAGAAAGCAACTAAAGTTGTTTCGTCATCGATGAAGAAAACAAAGAAGAAGTTGAAAAAACCCAAGTACTCTAAGTCGTCAAAACTGCAGCCAAGCTCTGGTGATGGGCAAAAATGGACTACACTGGAACACAATGGTGTGATTTTTCCACCTCCATACAAACCTCATGGGGTTAAGATGCTCTACAAGGGAAAGCCCGTGGATCTTACTCCAGAGCAGGAAGAGGTCTCAATCTGTCTCTGATTGTATGTGTCTCATTCATGTCTTTGTGATTTTATTCTTAGTACAGCAATTTCTCTGCAGGTCGCAACAATGTATGCCGTGATGTTAGACACTGAATACATGACTAAAGAGCAGTTCAAAGAGAATTTCATGAATGACTGGAGAAAAATACTTGGAAAA</genome_strand>
        <mrna_strand>GAAGAAGTTAAGCCTAAGATTCGTCAGAATGGTTTGCCATCGGCGACAGTGGGAAGTAAGAGACCCCCTGGTGAGGTCAAGTCTGCTGCTCAGGCTTCAGTTAAAAAGCCTAGACTTTCTGATGCGTCCACACCTGTTTCTAGTAAGCAACCGCCTTTCAAAACTGAAAAGAAGACAGAGGACGATGACGACGATGTTCCTATATCTCAGAGGATAAAAAAGGCAGTAGATTCAGCTTCAGCTTCAGCTAGTAAAGTGTCATATGTGAAGAAAGCAACTAAAGTTGTTTCGTCATCGATGAAGAAAACAAAGAAGAAGTTGAAAAAACCCAAGTACTCTAAGTCGTCAAAACTGCAGCCAAGCTCTGGTGATGGGCAAAAATGGACTACACTGGAACACAATGGTGTGATTTTTCCACCTCCATACAAACCTCATGGGGTTAAGATGCTCTACAAGGGAAAGCCCGTGGATCTTACTCCAGAGCAGGAAGAG..............................................................................GTCGCAACAATGTATGCCGTGATGTTAGACACTGAATACATGACTAAAGAGCAGTTCAAAGAGAATTTCATGAATGACTGGAGAAAAATACTTGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209202" ref_strand="+" ref_description="SGN-E209202 [cLEC-38-J8]">
      <seq>tgatgaaactcccttagcatcaaggtttccaatgaaatccaatgcaggggcttccactagcaagttttctagttctgaagaagttaagcctaagattcgtcagaatggtttgccatctgcgacagttttaagtaagagaccccctggtgaggtcaagtctgctgctcaggcttcagttaaaaagcctagactttctgatgcgtccacacctgtttctagtaagcaaccgcctttcaaaactgaaaagaagacagaggacgatgacgacgatgttcctatatctcagaggataaaaaaggcagtagattcagcttcagcttcagctagtaaagtgtcatatgtgaagaaagcaactaaagttgtttcgtcatcgatgaagaaaacaaagaagaagttgaaaaaacccaagtactctaagtcgtcaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="50041" stop="49013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49741" g_stop="49313" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E209202" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49741" e_stop="49313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGAAACTCCCTTAGCATCAAGGTTTCCAATGAAATCCAATGCAGGGGCTTCCACTAGCAAGTTTTCTAGTTCTGAAGAAGTTAAGCCTAAGATTCGTCAGAATGGTTTGCCATCTGCGACAGTTTTAAGTAAGAGACCCCCTGGTGAGGTCAAGTCTGCTGCTCAGGCTTCAGTTAAAAAGCCTAGACTTTCTGATGCGTCCACACCTGTTTCTAGTAAGCAACCGCCTTTCAAAACTGAAAAGAAGACAGAGGACGATGACGACGATGTTCCTATATCTCAGAGGATAAAAAAGGCAGTAGATTCAGCTTCAGCTTCAGCTAGTAAAGTGTCATATGTGAAGAAAGCAACTAAAGTTGTTTCGTCATCGATGAAGAAAACAAAGAAGAAGTTGAAAAAACCCAAGTACTCTAAGTCGTCAAAACT</genome_strand>
        <mrna_strand>TGATGAAACTCCCTTAGCATCAAGGTTTCCAATGAAATCCAATGCAGGGGCTTCCACTAGCAAGTTTTCTAGTTCTGAAGAAGTTAAGCCTAAGATTCGTCAGAATGGTTTGCCATCTGCGACAGTTTTAAGTAAGAGACCCCCTGGTGAGGTCAAGTCTGCTGCTCAGGCTTCAGTTAAAAAGCCTAGACTTTCTGATGCGTCCACACCTGTTTCTAGTAAGCAACCGCCTTTCAAAACTGAAAAGAAGACAGAGGACGATGACGACGATGTTCCTATATCTCAGAGGATAAAAAAGGCAGTAGATTCAGCTTCAGCTTCAGCTAGTAAAGTGTCATATGTGAAGAAAGCAACTAAAGTTGTTTCGTCATCGATGAAGAAAACAAAGAAGAAGTTGAAAAAACCCAAGTACTCTAAGTCGTCAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285888" ref_strand="+" ref_description="SGN-E285888 [cLES-13-C9]">
      <seq>agcctagactttctgatgcgtccacacctgtttctagtaagcaaccgcctttcaaaactgaaaagaagacagaggacgatgacgacgatgttcctatatctcagaggataaaaaaggcagtagattcagcttcagcttcagctagtaaagtgtcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="49859" stop="49103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49559" g_stop="49403" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E285888" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>157</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49559" e_stop="49403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTAGACTTTCTGATGCGTCCACACCTGTTTCTAGTAAGCAACCGCCTTTCAAAACTGAAAAGAAGACAGAGGACGATGACGACGATGTTCCTATATCTCAGAGGATAAAAAAGGCAGTAGATTCAGCTTCAGCTTCAGCTAGTAAAGTGTCATA</genome_strand>
        <mrna_strand>AGCCTAGACTTTCTGATGCGTCCACACCTGTTTCTAGTAAGCAACCGCCTTTCAAAACTGAAAAGAAGACAGAGGACGATGACGACGATGTTCCTATATCTCAGAGGATAAAAAAGGCAGTAGATTCAGCTTCAGCTTCAGCTAGTAAAGTGTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210206" ref_strand="+" ref_description="SGN-E210206 [cLEC-40-K18]">
      <seq>taagacagtcacctcttctaaggcatctccagcagtttcacctttaactagtccaaaagcgtcgcctctgtcaagcaggacatctcctgcaccaaactcaaggccgtcatcttctgcaggtaatcaggcaaaaaatgttaatcaacaatccaatgttactcctaaggagtcgaaacaagctgttgaaccaaaatctgaacctaatgatgaagctgaggattctgatgatgataaactattgagttctagggtcccttctgggttatctaagagcacttctgttcatgccaagaaagtgctttgtacttcaacatcagttcagaagtctagacctcccaaaaaagaggattcagatgatgaaactcccttagcatcaaggtttccaatgaaatccaatgcaggggcttccactagcaagttttctagttctgaagaagttaagcctaagattcgtcagaatggtttgccatctgcgacagttttaagtaagagaccccctggtgaggtcaagtctgctgctcaggcttcagttaaaaagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="50395" stop="49255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50095" g_stop="49555" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E210206" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50095" e_stop="49555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCATGCCAAGAAAGTGCTTTGTACTTCAACATCAGTTCAGAAGTCTAGACCTCCCAAAAAAGAGGATTCAGATGATGAAACTCCCTTAGCATCAAGGTTTCCAATGAAATCCAATGCAGGGGCTTCCACTAGCAAGTTTTCTAGTTCTGAAGAAGTTAAGCCTAAGATTCGTCAGAATGGTTTGCCATCTGCGACAGTTTTAAGTAAGAGACCCCCTGGTGAGGTCAAGTCTGCTGCTCAGGCTTCAGTTAAAAAGCCT</genome_strand>
        <mrna_strand>TAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCATGCCAAGAAAGTGCTTTGTACTTCAACATCAGTTCAGAAGTCTAGACCTCCCAAAAAAGAGGATTCAGATGATGAAACTCCCTTAGCATCAAGGTTTCCAATGAAATCCAATGCAGGGGCTTCCACTAGCAAGTTTTCTAGTTCTGAAGAAGTTAAGCCTAAGATTCGTCAGAATGGTTTGCCATCTGCGACAGTTTTAAGTAAGAGACCCCCTGGTGAGGTCAAGTCTGCTGCTCAGGCTTCAGTTAAAAAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249356" ref_strand="+" ref_description="SGN-E249356 [cLEF-50-I4]">
      <seq>gcaaaaaaatgttaatcaacaatccaatgttactcctaacgagtcgaaacaagctgttgaaccaaaatctgaacctaatgatgaagctgaggattctgatgatgataaactattgagttctagggtcccttctgggttatctaagagcacttctgttcatgccaagaaagtgctttgtacttcaacatcagttcagaagtctagacctcccaaaaaagaggattcagatgatgaaactcccttagcatcaaggtttccaatgaaatccaatgcaggggcttccactagcaagttgtctagttctgaagaagttaagcctaagattcgtcagaatggtttgccatctgcgacagctttaagtaagagaccccctggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="50268" stop="49292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49969" g_stop="49592" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E249356" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49969" e_stop="49592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCATGCCAAGAAAGTGCTTTGTACTTCAACATCAGTTCAGAAGTCTAGACCTCCCAAAAAAGAGGATTCAGATGATGAAACTCCCTTAGCATCAAGGTTTCCAATGAAATCCAATGCAGGGGCTTCCACTAGCAAGTTTTCTAGTTCTGAAGAAGTTAAGCCTAAGATTCGTCAGAATGGTTTGCCATCTGCGACAGTTTTAAGTAAGAGACCCCCTGGTGA</genome_strand>
        <mrna_strand>GCAAAAAAATGTTAATCAACAATCCAATGTTACTCCTAACGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCATGCCAAGAAAGTGCTTTGTACTTCAACATCAGTTCAGAAGTCTAGACCTCCCAAAAAAGAGGATTCAGATGATGAAACTCCCTTAGCATCAAGGTTTCCAATGAAATCCAATGCAGGGGCTTCCACTAGCAAGTTGTCTAGTTCTGAAGAAGTTAAGCCTAAGATTCGTCAGAATGGTTTGCCATCTGCGACAGCTTTAAGTAAGAGACCCCCTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317693" ref_strand="+" ref_description="SGN-E317693 [cTOB-8-G12]">
      <seq>caaaatctgaacctaatgatgaagctgaggattctgatgatgataaactattgagttctagggtcccttctgggttatctaagagcacttctgttcatgccaagaaagtgctgtgtgcttcaacatcagttcagaagtctagacctcccaaaaaagaggattcagatgatgaaactcccttagcatcaaggtttccaatgaaatccaatgcaggggcttccactagcaagttttctagtgctgaaaaagttaagcctaagattcgtcggaatggtttgccatctgcgacagttttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="50207" stop="49310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49907" g_stop="49610" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E317693" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49907" e_stop="49610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCATGCCAAGAAAGTGCTTTGTACTTCAACATCAGTTCAGAAGTCTAGACCTCCCAAAAAAGAGGATTCAGATGATGAAACTCCCTTAGCATCAAGGTTTCCAATGAAATCCAATGCAGGGGCTTCCACTAGCAAGTTTTCTAGTTCTGAAGAAGTTAAGCCTAAGATTCGTCAGAATGGTTTGCCATCTGCGACAGTTTTAAG</genome_strand>
        <mrna_strand>CAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCATGCCAAGAAAGTGCTGTGTGCTTCAACATCAGTTCAGAAGTCTAGACCTCCCAAAAAAGAGGATTCAGATGATGAAACTCCCTTAGCATCAAGGTTTCCAATGAAATCCAATGCAGGGGCTTCCACTAGCAAGTTTTCTAGTGCTGAAAAAGTTAAGCCTAAGATTCGTCGGAATGGTTTGCCATCTGCGACAGTTTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340346" ref_strand="+" ref_description="SGN-E340346 [cTOF-2-B19]">
      <seq>cgaacttcctcatccccattctcctcctccttccgatctctttctccggccaaattcatctccataaaggagaacattatatgacagtatagcatagagaaagatcatggctgtagaggcttttgccaaaacaaatttgatggaagatatggatgatgacgatgacatgcctttagttttcaaacgaagtagtaccacatcaaagcaaaatcagtccaattcatcatctcagaagcaggatggaagatcggggcggcaagttcctgatatacgttcacctaatggccagagctctagtactcataaagttaagacagtcacctcttctaaggcatctccagcagtttcacctttaactagtccaaaagcgtcgcctctgtcaagcaggacatctcctgcaccaaactcaaggccgtcatcttctgcaggtaatcaggcaaaaaatgttaatcaacaatccaatgttactcctaaggagtcgaaacaagctgttgaaccaaaatctgaacctaatgatgaagctgaggattctgatgatgataaactattgagttctagggtcccttctgggttatctaagagcacttctgttcatgccaagaaagtgctttgtacttcaacatcangtcagaagtctagacctnccaaaaaagagattcagatgatgaaactcccttagcatcaaggtttccaatgaaatccaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="51672" stop="49396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51372" g_stop="51310" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51309" i_stop="50342" i_length="968">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50341" g_stop="49696" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="708" r_length="645" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E340346" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51372" e_stop="51310"/>
          <exon e_start="50341" e_stop="49696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACTTCCTCATCCCCATTCTCCTCCTCCTTCCGATCTCTTTCTCCGGCCAAATTCATCTCCGTACGTTCACCTCTCTTTCTCTCTCTCTCTCTCTCTCTCCTGCTCTATATCTTTCCAATTTCATCTATCTGAAACAAAAACCCTAATCCCCCCCTTTTTTTTTCATGTAATAATTAAAATGTGAAATTGTTCTAATGATTTATCTCTTATCTCTCCACTTCTTAATGAAAGCTTAAGTTCCGATTTGTTAATTCTTATAACTATTTTTATATGCTTACTAGTTAATTTGTACATTTTTGGTTTTTTTTTAAACCATCTTAAACCACTTCCTTAAAGCTCCGATGGTCGACTAATTTGTCTTTTCTAATGCTAATCAGTTTTTATTACATTTTATCTGAAAATTTGATTTTTTTTAAATCTTTAATGTGCATGTATATTTCAAGCTCACAGTTACCAGGAGCCTACTGTTTAATTTGCTTCTAGATTTGGGGTTATAGTATGTGTTGGAATAGAAAGGAGAAATTTCCATATGAAGAAATTTTATTTAGCTTGCTCTGCGGATTTTATGTTTCATACTGCATACAAAATGAATGGAGAGGGGAACGGATCCTGTCTTATTTTTGTGTTTGTGTGATGGGGAGAGAGATGCCCTTTAAAGAAGCATTGAGTCCTTGAGGATAAGTGCCAAGTTAATGAGAAATAAACTTACTTTTTGGAAAGAGAAAACATAGATGAAGTAAATTTAAAAAGAAACTTGAACTGCATTTTAAAAAATGCTGGAATTGTGTTTGGCTTGATAGGTTATAATACCTATACTTAAAGTACAACTGGACTAGTTGTTAAGAGGAAGAAACTAGATTTATGTTTTCTTGCCATATGTTGGGGTTATAGATTCGTTTCTCCCTTGTGGCTTTCTGTTACAGCCTTGTTGCAGTGATATACTTCAATTTTTTGTTCTCTAGGTGTCCTTTGCTTTTTCCTTTTTATTGTATTTTAACTGCCCTATAATTATGAAAAAATGTTTACAGATAAAGGAGAACATTATATGACAGTATAGCATAGAGAAAGATCATGGCTGTAGAGGCTTTTGCCAAAACAAATTTGATGGAAGATATGGATGATGACGATGACATGCCTTTAGTTTTCAAACGAAGTAGTACCACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGAAGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCATGCCAAGAAAGTGCTTTGTACTTCAACATCAGTTCAGAAGTCTAGACCTCCCAAAAAAGAGGATTCAGATGATGAAACTCCCTTAGCATCAAGGTTTCCAATGAAATCCAATGCA</genome_strand>
        <mrna_strand>CGAACTTCCTCATCCCCATTCTCCTCCTCCTTCCGATCTCTTTCTCCGGCCAAATTCATCTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGGAGAACATTATATGACAGTATAGCATAGAGAAAGATCATGGCTGTAGAGGCTTTTGCCAAAACAAATTTGATGGAAGATATGGATGATGACGATGACATGCCTTTAGTTTTCAAACGAAGTAGTACCACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGAAGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCATGCCAAGAAAGTGCTTTGTACTTCAACATCANGTCAGAAGTCTAGACCTNCCAAAAAAGA-GATTCAGATGATGAAACTCCCTTAGCATCAAGGTTTCCAATGAAATCCAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323201" ref_strand="+" ref_description="SGN-E323201 [cTOB-28-K7]">
      <seq>tcctccttccgatctctttctccggccaaattcatctccataaaggagaacattatatgacagtatagcatagagaaagatcatggctgtagaggcttttgccaaaacaaatttgatggaagatatggatgatgacgatgacatgcctttagttttcaaacgaagtagtaccacatcaaagcaaaatcagtccaattcatcatctcagaagcaggatggaagatcggggcggcaagttcctgatatacgttcacctaatggccagagctctagtactcataaagttaagacagtcacctcttctaaggcatctccagcagtttcacctttaactagtccaaaagcgtcgcctctgtcaagcaggacatctcctgcaccaaactcaaggccgtcatcttctgcaggtaatcaggcaaaaaatgttaatcaacaatccaatgttactcctaaggagtcgaaacaagctgttgaaccaaaatctgaacctaatgatgaagctgaggattctgatgatgataaactattgagttctagggtcccttctgggttatctaagagcacttctgttcatgccaagaaagtgctttgtacttcaacatcagttcagaagtctagacctcccaaaaaagaggattcagatgatgaaactcccttagcatcaaggtttccaatgaaatccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="51648" stop="49399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51348" g_stop="51310" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51309" i_stop="50342" i_length="968">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50341" g_stop="49699" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="682" r_length="643" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E323201" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51348" e_stop="51310"/>
          <exon e_start="50341" e_stop="49699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCTTCCGATCTCTTTCTCCGGCCAAATTCATCTCCGTACGTTCACCTCTCTTTCTCTCTCTCTCTCTCTCTCTCCTGCTCTATATCTTTCCAATTTCATCTATCTGAAACAAAAACCCTAATCCCCCCCTTTTTTTTTCATGTAATAATTAAAATGTGAAATTGTTCTAATGATTTATCTCTTATCTCTCCACTTCTTAATGAAAGCTTAAGTTCCGATTTGTTAATTCTTATAACTATTTTTATATGCTTACTAGTTAATTTGTACATTTTTGGTTTTTTTTTAAACCATCTTAAACCACTTCCTTAAAGCTCCGATGGTCGACTAATTTGTCTTTTCTAATGCTAATCAGTTTTTATTACATTTTATCTGAAAATTTGATTTTTTTTAAATCTTTAATGTGCATGTATATTTCAAGCTCACAGTTACCAGGAGCCTACTGTTTAATTTGCTTCTAGATTTGGGGTTATAGTATGTGTTGGAATAGAAAGGAGAAATTTCCATATGAAGAAATTTTATTTAGCTTGCTCTGCGGATTTTATGTTTCATACTGCATACAAAATGAATGGAGAGGGGAACGGATCCTGTCTTATTTTTGTGTTTGTGTGATGGGGAGAGAGATGCCCTTTAAAGAAGCATTGAGTCCTTGAGGATAAGTGCCAAGTTAATGAGAAATAAACTTACTTTTTGGAAAGAGAAAACATAGATGAAGTAAATTTAAAAAGAAACTTGAACTGCATTTTAAAAAATGCTGGAATTGTGTTTGGCTTGATAGGTTATAATACCTATACTTAAAGTACAACTGGACTAGTTGTTAAGAGGAAGAAACTAGATTTATGTTTTCTTGCCATATGTTGGGGTTATAGATTCGTTTCTCCCTTGTGGCTTTCTGTTACAGCCTTGTTGCAGTGATATACTTCAATTTTTTGTTCTCTAGGTGTCCTTTGCTTTTTCCTTTTTATTGTATTTTAACTGCCCTATAATTATGAAAAAATGTTTACAGATAAAGGAGAACATTATATGACAGTATAGCATAGAGAAAGATCATGGCTGTAGAGGCTTTTGCCAAAACAAATTTGATGGAAGATATGGATGATGACGATGACATGCCTTTAGTTTTCAAACGAAGTAGTACCACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGAAGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCATGCCAAGAAAGTGCTTTGTACTTCAACATCAGTTCAGAAGTCTAGACCTCCCAAAAAAGAGGATTCAGATGATGAAACTCCCTTAGCATCAAGGTTTCCAATGAAATCCAAT</genome_strand>
        <mrna_strand>TCCTCCTTCCGATCTCTTTCTCCGGCCAAATTCATCTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGGAGAACATTATATGACAGTATAGCATAGAGAAAGATCATGGCTGTAGAGGCTTTTGCCAAAACAAATTTGATGGAAGATATGGATGATGACGATGACATGCCTTTAGTTTTCAAACGAAGTAGTACCACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGAAGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCATGCCAAGAAAGTGCTTTGTACTTCAACATCAGTTCAGAAGTCTAGACCTCCCAAAAAAGAGGATTCAGATGATGAAACTCCCTTAGCATCAAGGTTTCCAATGAAATCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325482" ref_strand="+" ref_description="SGN-E325482 [cTOC-1-J2]">
      <seq>ccataaagcaaaatcagtccaattcatcatctcaaacaggatggaagatcgggcggcaagttcctgatatactcacctaatggccagagctctagtactcataaagtaagacagcaccttttaaggcatctccagcagttacctttaactagtcaaaagcgtcgcctctgtcaagcagacatctcctgcaccaaactcaaggccgtcatcttctgcaggtaatcaggcaaaaaatgttaatcaacaatccaatgttactcctaaggagtcgaaacaagctgttgaaccaaaatctgaacctaatgatgaagctgaggattctgatgatgataaactattgagttctagggtcccttctgggttatctaagagcacttctgttcatgccaagaaagtgctttgtacttcaacatcagttcagaagtctagacctcccaaaaaagaggattcagatgatgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="50507" stop="49433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50208" g_stop="49733" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E325482" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.030" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50208" e_stop="49733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGAAGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCATGCCAAGAAAGTGCTTTGTACTTCAACATCAGTTCAGAAGTCTAGACCTCCCAAAAAAGAGGATTCAGATGATGAAAC</genome_strand>
        <mrna_strand>CCAT-AAAGCAAAATCAGTCCAATTCATCATCTCA-AA-CAGGATGGAAGATC-GGGCGGCAAGTTCCTGATATAC--TCACCTAATGGCCAGAGCTCTAGTACTCATAAAG-TAAGACAG-CACCT-TT-TAAGGCATCTCCAGCAG-TT-ACCTTTAACTAGT-CAAAAGCGTCGCCTCTGTCAAGCA-GACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCATGCCAAGAAAGTGCTTTGTACTTCAACATCAGTTCAGAAGTCTAGACCTCCCAAAAAAGAGGATTCAGATGATGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369650" ref_strand="+" ref_description="SGN-E369650 [TUS-25-H22]">
      <seq>gaacttcctcatccccattctcctcctccttccgatctctttctccggccaaattcatctccataaaggagaacattatatgacagtatagcatagagaaagatcatggctgtagaggcttttgccaaaacaaatttgatggaagatatggatgatgacgatgacatgcctttagttttcaaacgaagtagtaccacatcaaagcaaaatcagtccaattcatcatctcagaagcaggatggaagatcggggcggcaagttcctgatatacgttcacctaatggccagagctctagtactcataaagttaagacagtcacctcttctaaggcatctccagcagtttcacctttaactagtccaaaagcgtcgcctctgtcaagcaggacatctcctgcaccaaactcaaggccgtcatcttctgcaggtaatcaggcaaaaaatgttaatcaacaatccaatgttactcctaaggagtcgaaacaagctgttgaaccaaaatctgaacctaatgatgaagctgaggattctgatgatgataaactattgagttctagggtcccttctgggttatctaagagcacttctgttcatgccaagaaagtgctttgtacttcaacatcagttcagaagtctagacctcccaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="51671" stop="49453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51371" g_stop="51310" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51309" i_stop="50342" i_length="968">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50341" g_stop="49753" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="651" r_length="589" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E369650" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51371" e_stop="51310"/>
          <exon e_start="50341" e_stop="49753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTCCTCATCCCCATTCTCCTCCTCCTTCCGATCTCTTTCTCCGGCCAAATTCATCTCCGTACGTTCACCTCTCTTTCTCTCTCTCTCTCTCTCTCTCCTGCTCTATATCTTTCCAATTTCATCTATCTGAAACAAAAACCCTAATCCCCCCCTTTTTTTTTCATGTAATAATTAAAATGTGAAATTGTTCTAATGATTTATCTCTTATCTCTCCACTTCTTAATGAAAGCTTAAGTTCCGATTTGTTAATTCTTATAACTATTTTTATATGCTTACTAGTTAATTTGTACATTTTTGGTTTTTTTTTAAACCATCTTAAACCACTTCCTTAAAGCTCCGATGGTCGACTAATTTGTCTTTTCTAATGCTAATCAGTTTTTATTACATTTTATCTGAAAATTTGATTTTTTTTAAATCTTTAATGTGCATGTATATTTCAAGCTCACAGTTACCAGGAGCCTACTGTTTAATTTGCTTCTAGATTTGGGGTTATAGTATGTGTTGGAATAGAAAGGAGAAATTTCCATATGAAGAAATTTTATTTAGCTTGCTCTGCGGATTTTATGTTTCATACTGCATACAAAATGAATGGAGAGGGGAACGGATCCTGTCTTATTTTTGTGTTTGTGTGATGGGGAGAGAGATGCCCTTTAAAGAAGCATTGAGTCCTTGAGGATAAGTGCCAAGTTAATGAGAAATAAACTTACTTTTTGGAAAGAGAAAACATAGATGAAGTAAATTTAAAAAGAAACTTGAACTGCATTTTAAAAAATGCTGGAATTGTGTTTGGCTTGATAGGTTATAATACCTATACTTAAAGTACAACTGGACTAGTTGTTAAGAGGAAGAAACTAGATTTATGTTTTCTTGCCATATGTTGGGGTTATAGATTCGTTTCTCCCTTGTGGCTTTCTGTTACAGCCTTGTTGCAGTGATATACTTCAATTTTTTGTTCTCTAGGTGTCCTTTGCTTTTTCCTTTTTATTGTATTTTAACTGCCCTATAATTATGAAAAAATGTTTACAGATAAAGGAGAACATTATATGACAGTATAGCATAGAGAAAGATCATGGCTGTAGAGGCTTTTGCCAAAACAAATTTGATGGAAGATATGGATGATGACGATGACATGCCTTTAGTTTTCAAACGAAGTAGTACCACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGAAGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCATGCCAAGAAAGTGCTTTGTACTTCAACATCAGTTCAGAAGTCTAGACCTCCCAAAAAA</genome_strand>
        <mrna_strand>GAACTTCCTCATCCCCATTCTCCTCCTCCTTCCGATCTCTTTCTCCGGCCAAATTCATCTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGGAGAACATTATATGACAGTATAGCATAGAGAAAGATCATGGCTGTAGAGGCTTTTGCCAAAACAAATTTGATGGAAGATATGGATGATGACGATGACATGCCTTTAGTTTTCAAACGAAGTAGTACCACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGAAGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCATGCCAAGAAAGTGCTTTGTACTTCAACATCAGTTCAGAAGTCTAGACCTCCCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321413" ref_strand="+" ref_description="SGN-E321413 [cTOB-23-O17]">
      <seq>tcctccttccgatctctttctccggccaaattcatctccataaaggagaacattatatgacagtatagcatagagaaagatcatggctgtagaggcttttgccaaaacaaatttgatggaagatatggatgatgacgatgacatgcctttagttttcaaacgaagtagtaccacatcaaagcaaaatcagtccaattcatcatctcagaagcaggatggaagatcggggcggcaagttcctgatatacgttcacctaatggccagagctctagtactcataaagttaagacagtcacctcttctaaggcatctccagcagtttcacctttaactagtccaaaagcgtcgcctctgtcaagcaggacatctcctgcaccaaactcaaggccgtcatcttctgcaggtaatcaggcaaaaaatgttaatcaacaatccaatgttactcctaaggagtcgaaacaagctgttgaaccaaaatctgaacctaatgatgaagctgaggattctgatgatgataaactattgagttctagggtcccttctgggttatctaagagcacttctgttcatgccaagaaagtgctttgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="51648" stop="49490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51348" g_stop="51310" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51309" i_stop="50342" i_length="968">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50341" g_stop="49790" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="591" r_length="552" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E321413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51348" e_stop="51310"/>
          <exon e_start="50341" e_stop="49790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCTTCCGATCTCTTTCTCCGGCCAAATTCATCTCCGTACGTTCACCTCTCTTTCTCTCTCTCTCTCTCTCTCTCCTGCTCTATATCTTTCCAATTTCATCTATCTGAAACAAAAACCCTAATCCCCCCCTTTTTTTTTCATGTAATAATTAAAATGTGAAATTGTTCTAATGATTTATCTCTTATCTCTCCACTTCTTAATGAAAGCTTAAGTTCCGATTTGTTAATTCTTATAACTATTTTTATATGCTTACTAGTTAATTTGTACATTTTTGGTTTTTTTTTAAACCATCTTAAACCACTTCCTTAAAGCTCCGATGGTCGACTAATTTGTCTTTTCTAATGCTAATCAGTTTTTATTACATTTTATCTGAAAATTTGATTTTTTTTAAATCTTTAATGTGCATGTATATTTCAAGCTCACAGTTACCAGGAGCCTACTGTTTAATTTGCTTCTAGATTTGGGGTTATAGTATGTGTTGGAATAGAAAGGAGAAATTTCCATATGAAGAAATTTTATTTAGCTTGCTCTGCGGATTTTATGTTTCATACTGCATACAAAATGAATGGAGAGGGGAACGGATCCTGTCTTATTTTTGTGTTTGTGTGATGGGGAGAGAGATGCCCTTTAAAGAAGCATTGAGTCCTTGAGGATAAGTGCCAAGTTAATGAGAAATAAACTTACTTTTTGGAAAGAGAAAACATAGATGAAGTAAATTTAAAAAGAAACTTGAACTGCATTTTAAAAAATGCTGGAATTGTGTTTGGCTTGATAGGTTATAATACCTATACTTAAAGTACAACTGGACTAGTTGTTAAGAGGAAGAAACTAGATTTATGTTTTCTTGCCATATGTTGGGGTTATAGATTCGTTTCTCCCTTGTGGCTTTCTGTTACAGCCTTGTTGCAGTGATATACTTCAATTTTTTGTTCTCTAGGTGTCCTTTGCTTTTTCCTTTTTATTGTATTTTAACTGCCCTATAATTATGAAAAAATGTTTACAGATAAAGGAGAACATTATATGACAGTATAGCATAGAGAAAGATCATGGCTGTAGAGGCTTTTGCCAAAACAAATTTGATGGAAGATATGGATGATGACGATGACATGCCTTTAGTTTTCAAACGAAGTAGTACCACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGAAGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCATGCCAAGAAAGTGCTTTGTAC</genome_strand>
        <mrna_strand>TCCTCCTTCCGATCTCTTTCTCCGGCCAAATTCATCTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGGAGAACATTATATGACAGTATAGCATAGAGAAAGATCATGGCTGTAGAGGCTTTTGCCAAAACAAATTTGATGGAAGATATGGATGATGACGATGACATGCCTTTAGTTTTCAAACGAAGTAGTACCACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGAAGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCATGCCAAGAAAGTGCTTTGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321264" ref_strand="+" ref_description="SGN-E321264 [cTOB-23-M7]">
      <seq>tcctccttccgatctctttctccggccaaattcatctccataaaggagaacattatatgacagtatagcatagagaaagatcatggctgtagaggcttttgccaaaacaaatttgatggaagatatggatgatgacgatgacatgcctttagttttcaaacgaagtagtaccacatcaaagcaaaatcagtccaattcatcatctcagaagcaggatggaagatcggggcggcaagttcctgatatacgttcacctaatggccagagctctagtactcataaagttaagacagtcacctcttctaaggcatctccagcagtttcacctttaactagtccaaaagcgtcgcctctgtcaagcaggacatctcctgcaccaaactcaaggccgtcatcttctgcaggtaatcaggcaaaaaatgttaatcaacaatccaatgttactcctaaggagtcgaaacaagctgttgaaccaaaatctgaacctaatgatgaagctgangattctgatgatgataaactattgagttctanggtcccttctgggttatctaagagcacttctgttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="51648" stop="49511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51348" g_stop="51310" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51309" i_stop="50342" i_length="968">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50341" g_stop="49811" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="570" r_length="531" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E321264" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51348" e_stop="51310"/>
          <exon e_start="50341" e_stop="49811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCTTCCGATCTCTTTCTCCGGCCAAATTCATCTCCGTACGTTCACCTCTCTTTCTCTCTCTCTCTCTCTCTCTCCTGCTCTATATCTTTCCAATTTCATCTATCTGAAACAAAAACCCTAATCCCCCCCTTTTTTTTTCATGTAATAATTAAAATGTGAAATTGTTCTAATGATTTATCTCTTATCTCTCCACTTCTTAATGAAAGCTTAAGTTCCGATTTGTTAATTCTTATAACTATTTTTATATGCTTACTAGTTAATTTGTACATTTTTGGTTTTTTTTTAAACCATCTTAAACCACTTCCTTAAAGCTCCGATGGTCGACTAATTTGTCTTTTCTAATGCTAATCAGTTTTTATTACATTTTATCTGAAAATTTGATTTTTTTTAAATCTTTAATGTGCATGTATATTTCAAGCTCACAGTTACCAGGAGCCTACTGTTTAATTTGCTTCTAGATTTGGGGTTATAGTATGTGTTGGAATAGAAAGGAGAAATTTCCATATGAAGAAATTTTATTTAGCTTGCTCTGCGGATTTTATGTTTCATACTGCATACAAAATGAATGGAGAGGGGAACGGATCCTGTCTTATTTTTGTGTTTGTGTGATGGGGAGAGAGATGCCCTTTAAAGAAGCATTGAGTCCTTGAGGATAAGTGCCAAGTTAATGAGAAATAAACTTACTTTTTGGAAAGAGAAAACATAGATGAAGTAAATTTAAAAAGAAACTTGAACTGCATTTTAAAAAATGCTGGAATTGTGTTTGGCTTGATAGGTTATAATACCTATACTTAAAGTACAACTGGACTAGTTGTTAAGAGGAAGAAACTAGATTTATGTTTTCTTGCCATATGTTGGGGTTATAGATTCGTTTCTCCCTTGTGGCTTTCTGTTACAGCCTTGTTGCAGTGATATACTTCAATTTTTTGTTCTCTAGGTGTCCTTTGCTTTTTCCTTTTTATTGTATTTTAACTGCCCTATAATTATGAAAAAATGTTTACAGATAAAGGAGAACATTATATGACAGTATAGCATAGAGAAAGATCATGGCTGTAGAGGCTTTTGCCAAAACAAATTTGATGGAAGATATGGATGATGACGATGACATGCCTTTAGTTTTCAAACGAAGTAGTACCACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGAAGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCA</genome_strand>
        <mrna_strand>TCCTCCTTCCGATCTCTTTCTCCGGCCAAATTCATCTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGGAGAACATTATATGACAGTATAGCATAGAGAAAGATCATGGCTGTAGAGGCTTTTGCCAAAACAAATTTGATGGAAGATATGGATGATGACGATGACATGCCTTTAGTTTTCAAACGAAGTAGTACCACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGAAGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGANGATTCTGATGATGATAAACTATTGAGTTCTANGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248953" ref_strand="+" ref_description="SGN-E248953 [cLEF-49-H4]">
      <seq>gaacttcctcatccccattctcctcctccttccgatctggggctgcggccaaattcatctccataaaggagaacattatatgacagtatagcatagagaaagatcatggctgtagaggcttttgccaaaacaaatttgatggaagatatggatgatgacgatgacatgcctttagttttcaaacgaagtagtaccacatcaaagcaaaatcagtccaattcatcatctcagaagcaggatggaagatcggggcggcaagttcctgatatacgttcacctaatggccagagctctagtactcataaagttaagacagtcacctcttctaaggcatctccagcagtttcacctttaactagtccaaaagcgtcgcctctgtcaagcaggacatctcctgcaccaaactcaaggccgtcatcttctgcaggtaatcaggcaaaaaatgttaatcaacaatccaatgttactcctaaggagtcgaaacaagctgttgaaccaaaatctgaacctaatgatgaagctgaggattctgatgatgataaactattgagttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="51671" stop="49548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51371" g_stop="51310" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51309" i_stop="50342" i_length="968">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50341" g_stop="49848" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="556" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E248953" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51371" e_stop="51310"/>
          <exon e_start="50341" e_stop="49848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTCCTCATCCCCATTCTCCTCCTCCTTCCGATCTCTTTCTCCGGCCAAATTCATCTCCGTACGTTCACCTCTCTTTCTCTCTCTCTCTCTCTCTCTCCTGCTCTATATCTTTCCAATTTCATCTATCTGAAACAAAAACCCTAATCCCCCCCTTTTTTTTTCATGTAATAATTAAAATGTGAAATTGTTCTAATGATTTATCTCTTATCTCTCCACTTCTTAATGAAAGCTTAAGTTCCGATTTGTTAATTCTTATAACTATTTTTATATGCTTACTAGTTAATTTGTACATTTTTGGTTTTTTTTTAAACCATCTTAAACCACTTCCTTAAAGCTCCGATGGTCGACTAATTTGTCTTTTCTAATGCTAATCAGTTTTTATTACATTTTATCTGAAAATTTGATTTTTTTTAAATCTTTAATGTGCATGTATATTTCAAGCTCACAGTTACCAGGAGCCTACTGTTTAATTTGCTTCTAGATTTGGGGTTATAGTATGTGTTGGAATAGAAAGGAGAAATTTCCATATGAAGAAATTTTATTTAGCTTGCTCTGCGGATTTTATGTTTCATACTGCATACAAAATGAATGGAGAGGGGAACGGATCCTGTCTTATTTTTGTGTTTGTGTGATGGGGAGAGAGATGCCCTTTAAAGAAGCATTGAGTCCTTGAGGATAAGTGCCAAGTTAATGAGAAATAAACTTACTTTTTGGAAAGAGAAAACATAGATGAAGTAAATTTAAAAAGAAACTTGAACTGCATTTTAAAAAATGCTGGAATTGTGTTTGGCTTGATAGGTTATAATACCTATACTTAAAGTACAACTGGACTAGTTGTTAAGAGGAAGAAACTAGATTTATGTTTTCTTGCCATATGTTGGGGTTATAGATTCGTTTCTCCCTTGTGGCTTTCTGTTACAGCCTTGTTGCAGTGATATACTTCAATTTTTTGTTCTCTAGGTGTCCTTTGCTTTTTCCTTTTTATTGTATTTTAACTGCCCTATAATTATGAAAAAATGTTTACAGATAAAGGAGAACATTATATGACAGTATAGCATAGAGAAAGATCATGGCTGTAGAGGCTTTTGCCAAAACAAATTTGATGGAAGATATGGATGATGACGATGACATGCCTTTAGTTTTCAAACGAAGTAGTACCACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGAAGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTA</genome_strand>
        <mrna_strand>GAACTTCCTCATCCCCATTCTCCTCCTCCTTCCGATCTGGGGCTGCGGCCAAATTCATCTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGGAGAACATTATATGACAGTATAGCATAGAGAAAGATCATGGCTGTAGAGGCTTTTGCCAAAACAAATTTGATGGAAGATATGGATGATGACGATGACATGCCTTTAGTTTTCAAACGAAGTAGTACCACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGAAGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334724" ref_strand="+" ref_description="SGN-E334724 [cTOE-3-E11]">
      <seq>gaatgaccaccactcttcctcgcctacgaacttcctcatccccattctcctcctccttccgatctctttctccggccaaattcatctccataaaggagaacattatatgacagtatagcatagagaaagatcatggctgtagaggcttttgccaaaacaaatttgatggaagatatggatgatgacgatgacatgcctttagttttcaaacgaagtagtaccacatcaaagcaaaatcagtccaattcatcatctcagaagcaggatggaagatcggggcggcaagttcctgatatacgttcacctaatggccagagctctagtactcataaagttaagacagtcacctcttctaaggcatctccagcagtttcacctttaactagtccaaaagcgtcgcctctgtcaagcaggacatctcctgcaccaaactcaaggccgtcatcttctgcaggtaatcaggcaaaaaatgttaatcaacaatccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="51698" stop="49641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51398" g_stop="51310" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51309" i_stop="50342" i_length="968">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50341" g_stop="49941" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="490" r_length="401" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E334724" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51398" e_stop="51310"/>
          <exon e_start="50341" e_stop="49941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGACCACCACTCTTCCTCGCCTACGAACTTCCTCATCCCCATTCTCCTCCTCCTTCCGATCTCTTTCTCCGGCCAAATTCATCTCCGTACGTTCACCTCTCTTTCTCTCTCTCTCTCTCTCTCTCCTGCTCTATATCTTTCCAATTTCATCTATCTGAAACAAAAACCCTAATCCCCCCCTTTTTTTTTCATGTAATAATTAAAATGTGAAATTGTTCTAATGATTTATCTCTTATCTCTCCACTTCTTAATGAAAGCTTAAGTTCCGATTTGTTAATTCTTATAACTATTTTTATATGCTTACTAGTTAATTTGTACATTTTTGGTTTTTTTTTAAACCATCTTAAACCACTTCCTTAAAGCTCCGATGGTCGACTAATTTGTCTTTTCTAATGCTAATCAGTTTTTATTACATTTTATCTGAAAATTTGATTTTTTTTAAATCTTTAATGTGCATGTATATTTCAAGCTCACAGTTACCAGGAGCCTACTGTTTAATTTGCTTCTAGATTTGGGGTTATAGTATGTGTTGGAATAGAAAGGAGAAATTTCCATATGAAGAAATTTTATTTAGCTTGCTCTGCGGATTTTATGTTTCATACTGCATACAAAATGAATGGAGAGGGGAACGGATCCTGTCTTATTTTTGTGTTTGTGTGATGGGGAGAGAGATGCCCTTTAAAGAAGCATTGAGTCCTTGAGGATAAGTGCCAAGTTAATGAGAAATAAACTTACTTTTTGGAAAGAGAAAACATAGATGAAGTAAATTTAAAAAGAAACTTGAACTGCATTTTAAAAAATGCTGGAATTGTGTTTGGCTTGATAGGTTATAATACCTATACTTAAAGTACAACTGGACTAGTTGTTAAGAGGAAGAAACTAGATTTATGTTTTCTTGCCATATGTTGGGGTTATAGATTCGTTTCTCCCTTGTGGCTTTCTGTTACAGCCTTGTTGCAGTGATATACTTCAATTTTTTGTTCTCTAGGTGTCCTTTGCTTTTTCCTTTTTATTGTATTTTAACTGCCCTATAATTATGAAAAAATGTTTACAGATAAAGGAGAACATTATATGACAGTATAGCATAGAGAAAGATCATGGCTGTAGAGGCTTTTGCCAAAACAAATTTGATGGAAGATATGGATGATGACGATGACATGCCTTTAGTTTTCAAACGAAGTAGTACCACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGAAGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATG</genome_strand>
        <mrna_strand>GAATGACCACCACTCTTCCTCGCCTACGAACTTCCTCATCCCCATTCTCCTCCTCCTTCCGATCTCTTTCTCCGGCCAAATTCATCTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGGAGAACATTATATGACAGTATAGCATAGAGAAAGATCATGGCTGTAGAGGCTTTTGCCAAAACAAATTTGATGGAAGATATGGATGATGACGATGACATGCCTTTAGTTTTCAAACGAAGTAGTACCACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGAAGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269884" ref_strand="+" ref_description="SGN-E269884 [cLEM-17-B18]">
      <seq>cactctttctcgcctacgaacttcctcatgcgcattctcctcctccttccgatctctttctccggccaaattcatctccataaaggagaacattatatgacagtatagcatagagaaagatcatggctgtagaggcttttgccaaaacaaatttgatggaagatatggatgatgacgatgacatgcctttagttttcaaacgaagtagtaccacatcaaagcaaaatcagtccaattcatcatctcagaagcaggatggaagatcggggcggcaagttcctgatatacgttcacctaatggccagagctctagtactcataaagttaagacagtcacctcttctaaggcatctccaacagtttcacctttaactagtccaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="51688" stop="49737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51388" g_stop="51310" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51309" i_stop="50342" i_length="968">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50341" g_stop="50037" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="384" r_length="305" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E269884" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51388" e_stop="51310"/>
          <exon e_start="50341" e_stop="50037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTTCCTCGCCTACGAACTTCCTCATCCCCATTCTCCTCCTCCTTCCGATCTCTTTCTCCGGCCAAATTCATCTCCGTACGTTCACCTCTCTTTCTCTCTCTCTCTCTCTCTCTCCTGCTCTATATCTTTCCAATTTCATCTATCTGAAACAAAAACCCTAATCCCCCCCTTTTTTTTTCATGTAATAATTAAAATGTGAAATTGTTCTAATGATTTATCTCTTATCTCTCCACTTCTTAATGAAAGCTTAAGTTCCGATTTGTTAATTCTTATAACTATTTTTATATGCTTACTAGTTAATTTGTACATTTTTGGTTTTTTTTTAAACCATCTTAAACCACTTCCTTAAAGCTCCGATGGTCGACTAATTTGTCTTTTCTAATGCTAATCAGTTTTTATTACATTTTATCTGAAAATTTGATTTTTTTTAAATCTTTAATGTGCATGTATATTTCAAGCTCACAGTTACCAGGAGCCTACTGTTTAATTTGCTTCTAGATTTGGGGTTATAGTATGTGTTGGAATAGAAAGGAGAAATTTCCATATGAAGAAATTTTATTTAGCTTGCTCTGCGGATTTTATGTTTCATACTGCATACAAAATGAATGGAGAGGGGAACGGATCCTGTCTTATTTTTGTGTTTGTGTGATGGGGAGAGAGATGCCCTTTAAAGAAGCATTGAGTCCTTGAGGATAAGTGCCAAGTTAATGAGAAATAAACTTACTTTTTGGAAAGAGAAAACATAGATGAAGTAAATTTAAAAAGAAACTTGAACTGCATTTTAAAAAATGCTGGAATTGTGTTTGGCTTGATAGGTTATAATACCTATACTTAAAGTACAACTGGACTAGTTGTTAAGAGGAAGAAACTAGATTTATGTTTTCTTGCCATATGTTGGGGTTATAGATTCGTTTCTCCCTTGTGGCTTTCTGTTACAGCCTTGTTGCAGTGATATACTTCAATTTTTTGTTCTCTAGGTGTCCTTTGCTTTTTCCTTTTTATTGTATTTTAACTGCCCTATAATTATGAAAAAATGTTTACAGATAAAGGAGAACATTATATGACAGTATAGCATAGAGAAAGATCATGGCTGTAGAGGCTTTTGCCAAAACAAATTTGATGGAAGATATGGATGATGACGATGACATGCCTTTAGTTTTCAAACGAAGTAGTACCACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGAAGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAG</genome_strand>
        <mrna_strand>CACTCTTTCTCGCCTACGAACTTCCTCATGCGCATTCTCCTCCTCCTTCCGATCTCTTTCTCCGGCCAAATTCATCTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGGAGAACATTATATGACAGTATAGCATAGAGAAAGATCATGGCTGTAGAGGCTTTTGCCAAAACAAATTTGATGGAAGATATGGATGATGACGATGACATGCCTTTAGTTTTCAAACGAAGTAGTACCACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGAAGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCATCTCCAACAGTTTCACCTTTAACTAGTCCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="51481" stop="52376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51781" g_stop="52102" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51781" e_stop="52102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTTTAAGTGTATAGTAAGAAGATATATG-TTTT-TCTCGTTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTACAATTGTATAATTCGCAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGTATGTGTATATACAATTTTCTCTCGCTTTCTACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGCGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="51481" stop="52376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51781" g_stop="52071" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51781" e_stop="52071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTTTAAGTGTATAGTAAGAAGATATATG-TTTT-TCTCGTTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTACAATTGTATAATTCGCAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGTATGTGTATATACAATTTTCTCTCGCTTTCTACAAAACAGAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="51482" stop="52525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51782" g_stop="52220" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51782" e_stop="52220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTTTAAGTGTATAGTAAGAAGATATATG-TTTT-TCTCGTTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTACAATTGTATAATTCGCAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGTATGTGTATATACAATTTTCTCTCGCTTTCTACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGCGAGGCGAGCGAGAATAGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGA-AACTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350709" ref_strand="+" ref_description="SGN-E350709 [cTOS-7-K24]">
      <seq>acaaatgcaattctggaatggagacatgtgaagaggcaagggaaaaagctgaggttcttttattggcacaaaagaaaatgactgctacatgggagatgagggcgcgtcaaaaaggatggaaagaaggggcagccaagtctcgaactcagtctcaggggaatgtacagaccatgtaacatgcgcatggtctcaagtagcttgtctcgacttgatctgatgccaagttccggtgcaacaaagttgtctataattgagtcccagctcaaaaatgtgttagcacatgaatggattccatttattttgaatcatatgcacgattttagtttagagttcactataagatatccctctctatatgcgtagtcatctgaaacagattgccatttgttccactataaggcaaagcctttccatatatcctgctgagttgaaattccactagtaaaagtttgagtgaatattgcaatcaactgccttacaaattttcatctggctgagtggcatttgtcaacatttctatatctatatatgggtgaagaagattaactgtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="54507" stop="53355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54207" g_stop="53645" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E350709" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54207" e_stop="53645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAGATTGCCATTTGTTCCACTATAAGGCAAAGCCTTTCCATATATCCTGCTGAGTTGAAATTCCACTAGTAAAAGTTTGAGTGAATATTGCAATCAACTGCCTTACAAATTTTCATCTGGCTGAGTGGCATTTGTCAACATTTCTATATCTATATATGGGTGAAGAAGATTAACTGTGAAGTGTCACAAC</genome_strand>
        <mrna_strand>ACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAGATTGCCATTTGTTCCACTATAAGGCAAAGCCTTTCCATATATCCTGCTGAGTTGAAATTCCACTAGTAAAAGTTTGAGTGAATATTGCAATCAACTGCCTTACAAATTTTCATCTGGCTGAGTGGCATTTGTCAACATTTCTATATCTATATATGGGTGAAGAAGATTAACTGTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349533" ref_strand="+" ref_description="SGN-E349533 [cTOS-1-I10]">
      <seq>atgaaagaagcagacaaatgcaattctggaatggagacatgtgaagaggcaagggaaaaagctgaggttcttttattggcacaaaagaaaatgactgctacatgggagatgagggcgcgtcaaaaaggatggaaagaaggggcagccaagtctcgaactcagtctcaggggaatgtacagaccatgtaacatgcgcatggtctcaagtagcttgtctcgacttgatctgatgccaagttccggtgcaacaaagttgtctataattgagtcccagctcaaaaatgtgttagcacatgaatggattccatttattttgaatcatatgcacgattttagtttagagttcactataagatatccctctctatatgcgtagtcatctgaaacagattgccatttgttccactataaggcaaagcctttccatatatcctgctgagttgaaattccactagtaaaagtttgagtgaatattgcaatcaactgccttacaaattttcatctggctgagtggcatttgtcaacatttctatatctatatatgggtgaagaagattaactgtgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="54520" stop="53355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54220" g_stop="53646" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E349533" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54220" e_stop="53646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAGATTGCCATTTGTTCCACTATAAGGCAAAGCCTTTCCATATATCCTGCTGAGTTGAAATTCCACTAGTAAAAGTTTGAGTGAATATTGCAATCAACTGCCTTACAAATTTTCATCTGGCTGAGTGGCATTTGTCAACATTTCTATATCTATATATGGGTGAAGAAGATTAACTGTGAAGTGTCACAA</genome_strand>
        <mrna_strand>ATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAGATTGCCATTTGTTCCACTATAAGGCAAAGCCTTTCCATATATCCTGCTGAGTTGAAATTCCACTAGTAAAAGTTTGAGTGAATATTGCAATCAACTGCCTTACAAATTTTCATCTGGCTGAGTGGCATTTGTCAACATTTCTATATCTATATATGGGTGAAGAAGATTAACTGTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547998" ref_strand="+" ref_description="SGN-E547998 [TUS-57-A13](-)">
      <seq>ccccaggtttgagcaatgtttctttgacagattgtgctaagcgtgatccagaagttggtgaagacacggaaaaaaactttgctgatttgttgtctgaggaacttaaactgcgagaagctgaagcctcagaaaatcagcggaaggctgacatggcacttcttgaagcaaaaaagttgacatcccaatatatgaaagaagcagacaaatgcaattctggaatggagacatgtgaagaggcaagggaaaaagctgaggttcttttattggcacaaaagaaaatgactgctacatgggagatgagggcgcgtcaaaaaggatggaaagaaggggcagccaagtctcgaactcagtctcaggggaatgtacagaccatgtaacatgcgcatggtctcaagtagcttgtctcgacttgatctgatgccaagttccggtgcaacaaagttgtctataattgagtcccagctcaaaaatgtgttagcacatgaatggattccatttattttgaatcatatgcacgattttagtttagagttcactataagatatccctctctatatgcgtagtcatctgaaacagattgccatttgttccactataaggcaaagcctttccatatatcctgctgagttgaaattccactagtaaaagtttgagtgaatattgcaatcaactgccttacaaattttcatctggctgagtggcatttgtcaacatttctatatctatatatgggtgaagaagattaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="56468" stop="53362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56171" g_stop="56142" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56141" i_stop="54379" i_length="1763">
            <donor d_prob="0.817" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54378" g_stop="53662" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="747" r_length="717" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="748" polyA_stop="768"/>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E547998" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56171" e_stop="56142"/>
          <exon e_start="54378" e_stop="53662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGGTTTGAGCAATGTTTCTTTGACAGGTTAGTGTCATGAGATCTTTGGCAGTTCTTTAGTTTTCTTTGATTATGGTATCATTTATTTTTTGATCCGATGGAAGATTTCATCAAGTCATCATTTTCTTCTTCTAGCTTTTATCATTTACCTTTCTTAACATTGAGATCATCAACACTTTGTATTCTACGTTTTCATGAACTTTATTATCATAGGAATATGTTTGGGTTCGTATTTCGACTTTGAGCTTGAGGGGTTTTTAACCATTCTAGGTTGGTGTTGTCAAATGCTCTCTCCCTCTAAGTTATGTCAGAGATTTTCCGTTGGACTCCATATTTACCTTAATGTAAATAGGCCTGCAGATGAAATATTAGTAAGGGCTTCTAATATGATTTGTGTTTTTTTATAAGGAAAAAAAAAACGAACCCGTATTTTCTCTTGAATAACCTGCTTATGTACTGATCGAACCCTTATATTTTCTTGAATAACCTGCTTTCTTCTGTTATGACTCTCAGAATGATACCTTGATTGGAAGCTATTACGTGACACATGAAAATATTAGCTTTGGCAACTTAACACCTGAGGTGATATAACCCTTGGATTTCCCTTGTATGACACCTGCCTTCGTCAAGGACATTGTTTTGGACTTTTGATGGATCCCCTGATTGCCACAACTACATTTAACATGAAAAAGGCAGTAGCTTGATACTCCCTTTGTCCAACAATAGTTGTCCACTATTGACTTGCCACACCTTAAAAAACAATAAATAATAGGGGTAATATTACTATATTATCATTTGAATTTATTAAATTTTATGCTTTGAGAAATGTGTAGATGATAAATAGTATTTAATAGCAAGTTTAAAATAGACACAAAAAGGTAAATTATTTCTTGGTTTTCCAAAAGGACAAGTATTGTTGGACAACTATTTTTAGTAGAGTGGACAACTATTGTTGGACAGAGGAGCATAGAAGCTACTTACAACAACTTAATGGATCCAAAAATTCGGACAAGTATTTCTACGAAATTCTATGAGCATTTCCACTGGTAGCCTGATAACAACTTCGAAGAATTTCTGGACATGCCTTCCTCGTCCCCCTCTCTATCTTTTATCAGTTTCTCTCCTCAATATGGATTCATTTTGGCTACTAAAACAACAATAGCATACTTTTTCTGCAGAAGATTACCAGCTCTTTTTTTTTGTCGAAGTGGAAGGATCGCAGCATAGTTGTGATTAATTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCAATGTTTTGCAGATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAGATTGCCATTTGTTCCACTATAAGGCAAAGCCTTTCCATATATCCTGCTGAGTTGAAATTCCACTAGTAAAAGTTTGAGTGAATATTGCAATCAACTGCCTTACAAATTTTCATCTGGCTGAGTGGCATTTGTCAACATTTCTATATCTATATATGGGTGAAGAAGATTAA</genome_strand>
        <mrna_strand>CCCCAGGTTTGAGCAATGTTTCTTTGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAGATTGCCATTTGTTCCACTATAAGGCAAAGCCTTTCCATATATCCTGCTGAGTTGAAATTCCACTAGTAAAAGTTTGAGTGAATATTGCAATCAACTGCCTTACAAATTTTCATCTGGCTGAGTGGCATTTGTCAACATTTCTATATCTATATATGGGTGAAGAAGATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269947" ref_strand="+" ref_description="SGN-E269947 [cLEM-7-O19]">
      <seq>ttaaactgcgagaagctgaagcctcagaaaatcagcggaaggctgacatggcacttcttgaagcaaaaaagttgacatcccaatatatgaaagaagcagacaaatgcaattctggaatggagacatgtgaagaggcaagggaaaaagctgaggttcttttattggcacaaaagaaaatgactgctacatgggagatgagggcgcgtcaaaaaggatggaaagaaggggcagccaagtctcgaactcagtctcaggggaatgtacagaccatgtaacatgcgcatggtctcaagtagcttgtctcgacttgatctgatgccaagttccggtgcaacaaagttgtctataattgagtcccagctcaaaaatgtgttagcacatgaatggattccatttattttgaatcatatgcacgattttagtttagagttcactataagatatccctctctatatgcgtagtcatctgaaacagattgccatttgttccactataaggcaaagcctttccatatatcctgctgagttgaaattccactagtaaaagtttgagtgaatattgcaatcaactgccttacaaattttcatctggctgagtggcatttgtcaacatttctatatctatatatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="54606" stop="53376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54306" g_stop="53676" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E269947" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54306" e_stop="53676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAGATTGCCATTTGTTCCACTATAAGGCAAAGCCTTTCCATATATCCTGCTGAGTTGAAATTCCACTAGTAAAAGTTTGAGTGAATATTGCAATCAACTGCCTTACAAATTTTCATCTGGCTGAGTGGCATTTGTCAACATTTCTATATCTATATATGG</genome_strand>
        <mrna_strand>TTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAGATTGCCATTTGTTCCACTATAAGGCAAAGCCTTTCCATATATCCTGCTGAGTTGAAATTCCACTAGTAAAAGTTTGAGTGAATATTGCAATCAACTGCCTTACAAATTTTCATCTGGCTGAGTGGCATTTGTCAACATTTCTATATCTATATATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702697" ref_strand="+" ref_description="SGN-E702697 [FA19BG10]">
      <seq>gtaagcacaaaactaacaatttaactcaaaattgttttttccaacttctccgtttactggccagtagaaaaagcaaacagaacgaccaatggcgttgaatcaagcaggaagatcatcaccatgtagtcctagggtgttgaaatctgtattgggtctaatggcaattagtttggcagcctatattttgggtcctcctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgtaattgtgactgcaattcggaacccttcttttttattcccccaggtttgagcaatgtttctttgacagattgtgctaagcgtgatccagaagttggtgaagacacggaaaaaaactttgctgatttgttgtctgaggaacttaaactgcgagaagctgaagcctcagaaaatcagcggaaggctgacatggcacttcttgaagcaaaaaagttgacatcccaatatatgaaagaagcagacaaatgcaattctggaatggagacatgtgaagaggcaagggaaaaagctgaggttcttttattggcacaaaagaaaatgactgctacatgggagatgagggcgcgtcaaaaaggatggaaagaaggggcagccaagtctcgaactcagtctcaggggaatgtacagaccatgtaacatgcgcatggtctcaagtagcttgtctcgacttgatctgatgccaagttccggtgcaacaaagttgtctataattgagtcccagctcaaaaatgtgttagcacatgaatggattccatttattttgaatcatatgcacgattttagtttagagttcactataagatatccctctctatatgcgtagtcatctgaaacagaattgccatttgttccactataaggcaaagccttttcatatatcctgctgaattgaaattccactagtaaaagtttgagtgaatatggcaatccactgccttacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57755" stop="53426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57455" g_stop="57145" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57144" i_stop="56166" i_length="979">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56165" g_stop="56142" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="335" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56141" i_stop="54379" i_length="1763">
            <donor d_prob="0.817" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54378" g_stop="53721" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="994" r_length="659" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E702697" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>993</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57455" e_stop="57145"/>
          <exon e_start="56165" e_stop="56142"/>
          <exon e_start="54378" e_stop="53721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGCTTGTTTCATGAATGTGTTAACGTGAATTGAACTATTCCCCAATCATTCTGCTTGTTGTTATATGTCGTTTGGGATTATTTGGAGGAAGGGCGGGAGTCAGGATGTGTGGGTTAGAAAATTTGCTATCAACTTTGAATAATGTCTAAAAATACTATTTGCTTTTCCTCCTTATGAGTTATGAAACCTGTTGTCTTGAAGTCGTGGCTGATATGGTTAATTAGTTTGGTGACCTTCACATGTTTCTTGTGAGTTTGAGATATATTAAATTCTTCTGGTTTTCCTTTTCGTAATATAGTAAATCTTGAACAATTTGGAACTCACCTATCTTAAAACTGGGAGTTTTTAGTGATAGCTTTTGGTCTTTGTCCTTTGAATGGACCATAGTGGAGCCATGGAAGATTTCTCTTGCTTACTTGCCATGCTTGTTCAGCAGAATTGACATTTCCTATGATCTGGACACCATGTCTTTTTCTTAGGGTTGTTTAGAGTATCTGGTTACGTGAGGATATTGGTTTGTCGAGTATTGCTCCCATTGACTTCTTATTTTTGTATGTCTTGCAGGTTTGAGCAATGTTTCTTTGACAGGTTAGTGTCATGAGATCTTTGGCAGTTCTTTAGTTTTCTTTGATTATGGTATCATTTATTTTTTGATCCGATGGAAGATTTCATCAAGTCATCATTTTCTTCTTCTAGCTTTTATCATTTACCTTTCTTAACATTGAGATCATCAACACTTTGTATTCTACGTTTTCATGAACTTTATTATCATAGGAATATGTTTGGGTTCGTATTTCGACTTTGAGCTTGAGGGGTTTTTAACCATTCTAGGTTGGTGTTGTCAAATGCTCTCTCCCTCTAAGTTATGTCAGAGATTTTCCGTTGGACTCCATATTTACCTTAATGTAAATAGGCCTGCAGATGAAATATTAGTAAGGGCTTCTAATATGATTTGTGTTTTTTTATAAGGAAAAAAAAAACGAACCCGTATTTTCTCTTGAATAACCTGCTTATGTACTGATCGAACCCTTATATTTTCTTGAATAACCTGCTTTCTTCTGTTATGACTCTCAGAATGATACCTTGATTGGAAGCTATTACGTGACACATGAAAATATTAGCTTTGGCAACTTAACACCTGAGGTGATATAACCCTTGGATTTCCCTTGTATGACACCTGCCTTCGTCAAGGACATTGTTTTGGACTTTTGATGGATCCCCTGATTGCCACAACTACATTTAACATGAAAAAGGCAGTAGCTTGATACTCCCTTTGTCCAACAATAGTTGTCCACTATTGACTTGCCACACCTTAAAAAACAATAAATAATAGGGGTAATATTACTATATTATCATTTGAATTTATTAAATTTTATGCTTTGAGAAATGTGTAGATGATAAATAGTATTTAATAGCAAGTTTAAAATAGACACAAAAAGGTAAATTATTTCTTGGTTTTCCAAAAGGACAAGTATTGTTGGACAACTATTTTTAGTAGAGTGGACAACTATTGTTGGACAGAGGAGCATAGAAGCTACTTACAACAACTTAATGGATCCAAAAATTCGGACAAGTATTTCTACGAAATTCTATGAGCATTTCCACTGGTAGCCTGATAACAACTTCGAAGAATTTCTGGACATGCCTTCCTCGTCCCCCTCTCTATCTTTTATCAGTTTCTCTCCTCAATATGGATTCATTTTGGCTACTAAAACAACAATAGCATACTTTTTCTGCAGAAGATTACCAGCTCTTTTTTTTTGTCGAAGTGGAAGGATCGCAGCATAGTTGTGATTAATTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCAATGTTTTGCAGATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAG-ATTGCCATTTGTTCCACTATAAGGCAAAGCCTTTCCATATATCCTGCTGAGTTGAAATTCCACTAGTAAAAGTTTGAGTGAATATTGCAATCAACTGCCTTACAAATTTTC</genome_strand>
        <mrna_strand>GTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGCAATGTTTCTTTGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAGAATTGCCATTTGTTCCACTATAAGGCAAAGCCTTTTCATATATCCTGCTGAATTGAAATTCCACTAGTAAAAGTTTGAGTGAATATGGCAATCCACTGCCTTACAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734772" ref_strand="+" ref_description="SGN-E734772 [LB13CC01]">
      <seq>cgtttactggccagtagaaaaagcaaacagaacgaccaatggcgttgaatcaagcaggaagatcatcaccatgtagtcctagggtgttgaaatctgtattgggtctaatggcaattagtttggcagcctatattttgggtcctcctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgtaattgtgactgcaattcggaacccttcttttttattcccccaggtttgagcaatgtttctttgacagattgtgctaagcgtgatccagaagttggtgaagacacggaaaaaaactttgctgatttgttgtctgaggaacttaaactgcgagaagctgaagcctcagaaaatcagcggaaggctgacatggcacttcttgaagcaaaaaagttgacatcccaatatatgaaagaagcagacaaatgcaattctggaatggagacatgtgaagaggcaagggaaaaagctgaggttcttttattggcacaaaagaaaatgactgctatgtgggagatgagggcgcgtcaaaaaggatggaaagaaggggcagccaagtctcgaactcagtctcaggggaatgtacagaccatgtaacatgcgcatggtctcaagtagcttgtctcgacttgatctgatgccaagttccggtgcaacaaagttgtctataattgagtcccagctcaaaaatgtgttagcacatgaatggattccatttattttgaatcatatgcacgattttagtttagagttcactataagatatccctctctatatgcgtagtcatctgaaacagattgccatttgttccactataaggcaaagcctttccatatatcctgctgagttgaaatcccctaataaaagttgagtgaatattgcattcactgccttacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57705" stop="53426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57405" g_stop="57145" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57144" i_stop="56166" i_length="979">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56165" g_stop="56142" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="285" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56141" i_stop="54379" i_length="1763">
            <donor d_prob="0.817" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54378" g_stop="53721" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="940" r_length="655" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E734772" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>943</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57405" e_stop="57145"/>
          <exon e_start="56165" e_stop="56142"/>
          <exon e_start="54378" e_stop="53721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGCTTGTTTCATGAATGTGTTAACGTGAATTGAACTATTCCCCAATCATTCTGCTTGTTGTTATATGTCGTTTGGGATTATTTGGAGGAAGGGCGGGAGTCAGGATGTGTGGGTTAGAAAATTTGCTATCAACTTTGAATAATGTCTAAAAATACTATTTGCTTTTCCTCCTTATGAGTTATGAAACCTGTTGTCTTGAAGTCGTGGCTGATATGGTTAATTAGTTTGGTGACCTTCACATGTTTCTTGTGAGTTTGAGATATATTAAATTCTTCTGGTTTTCCTTTTCGTAATATAGTAAATCTTGAACAATTTGGAACTCACCTATCTTAAAACTGGGAGTTTTTAGTGATAGCTTTTGGTCTTTGTCCTTTGAATGGACCATAGTGGAGCCATGGAAGATTTCTCTTGCTTACTTGCCATGCTTGTTCAGCAGAATTGACATTTCCTATGATCTGGACACCATGTCTTTTTCTTAGGGTTGTTTAGAGTATCTGGTTACGTGAGGATATTGGTTTGTCGAGTATTGCTCCCATTGACTTCTTATTTTTGTATGTCTTGCAGGTTTGAGCAATGTTTCTTTGACAGGTTAGTGTCATGAGATCTTTGGCAGTTCTTTAGTTTTCTTTGATTATGGTATCATTTATTTTTTGATCCGATGGAAGATTTCATCAAGTCATCATTTTCTTCTTCTAGCTTTTATCATTTACCTTTCTTAACATTGAGATCATCAACACTTTGTATTCTACGTTTTCATGAACTTTATTATCATAGGAATATGTTTGGGTTCGTATTTCGACTTTGAGCTTGAGGGGTTTTTAACCATTCTAGGTTGGTGTTGTCAAATGCTCTCTCCCTCTAAGTTATGTCAGAGATTTTCCGTTGGACTCCATATTTACCTTAATGTAAATAGGCCTGCAGATGAAATATTAGTAAGGGCTTCTAATATGATTTGTGTTTTTTTATAAGGAAAAAAAAAACGAACCCGTATTTTCTCTTGAATAACCTGCTTATGTACTGATCGAACCCTTATATTTTCTTGAATAACCTGCTTTCTTCTGTTATGACTCTCAGAATGATACCTTGATTGGAAGCTATTACGTGACACATGAAAATATTAGCTTTGGCAACTTAACACCTGAGGTGATATAACCCTTGGATTTCCCTTGTATGACACCTGCCTTCGTCAAGGACATTGTTTTGGACTTTTGATGGATCCCCTGATTGCCACAACTACATTTAACATGAAAAAGGCAGTAGCTTGATACTCCCTTTGTCCAACAATAGTTGTCCACTATTGACTTGCCACACCTTAAAAAACAATAAATAATAGGGGTAATATTACTATATTATCATTTGAATTTATTAAATTTTATGCTTTGAGAAATGTGTAGATGATAAATAGTATTTAATAGCAAGTTTAAAATAGACACAAAAAGGTAAATTATTTCTTGGTTTTCCAAAAGGACAAGTATTGTTGGACAACTATTTTTAGTAGAGTGGACAACTATTGTTGGACAGAGGAGCATAGAAGCTACTTACAACAACTTAATGGATCCAAAAATTCGGACAAGTATTTCTACGAAATTCTATGAGCATTTCCACTGGTAGCCTGATAACAACTTCGAAGAATTTCTGGACATGCCTTCCTCGTCCCCCTCTCTATCTTTTATCAGTTTCTCTCCTCAATATGGATTCATTTTGGCTACTAAAACAACAATAGCATACTTTTTCTGCAGAAGATTACCAGCTCTTTTTTTTTGTCGAAGTGGAAGGATCGCAGCATAGTTGTGATTAATTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCAATGTTTTGCAGATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAGATTGCCATTTGTTCCACTATAAGGCAAAGCCTTTCCATATATCCTGCTGAGTTGAAATTCCACTAGTAAAAGTTTGAGTGAATATTGCAATCAACTGCCTTACAAATTTTC</genome_strand>
        <mrna_strand>CGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGCAATGTTTCTTTGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTATGTGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAGATTGCCATTTGTTCCACTATAAGGCAAAGCCTTTCCATATATCCTGCTGAGTTGAAA-TCCCCTAATAAAAG-TTGAGTGAATATTGCATTC-ACTGCCTTACAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325850" ref_strand="+" ref_description="SGN-E325850 [cTOC-12-D18]">
      <seq>aaaatttgtaaggcagttgattgcaatattcactcaaacttttactagtggaatttcaactcagcaggatatatggaaaggctttgccttatagtggaacaaatggcaatctgtttcagatgactacgcatatagagagggatatcttatagtgaactctaaactaaaatcgtgcatatgattcaaaataaatggaatccattcatgtgctaacacatttttgagctgggactcaattatagacaactttgttgcaccggaacttggcatcagatcaagtcgagacaagctacttgagaccatgcgcatgttacatggtctgtacattcccctgagactgagttcgagacttggctgccccttctttccatcctttttgacgcgccctcatctcccatgtagcagtcattttcttttgtgccaataaaagaacctcagctttttcccttgcctcttcacatgtctccattccagaattgcatttgtctgcttctttcatatattgggatgtcaacttttttgcttcaagaagtgccatgtcagccttccgctgattttctgaggcttcagcttctcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="53422" stop="54600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53722" g_stop="54300" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E325850" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53722" e_stop="54300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTGTAAGGCAGTTGATTGCAATATTCACTCAAACTTTTACTAGTGGAATTTCAACTCAGCAGGATATATGGAAAGGCTTTGCCTTATAGTGGAACAAATGGCAATCTGTTTCAGATGACTACGCATATAGAGAGGGATATCTTATAGTGAACTCTAAACTAAAATCGTGCATATGATTCAAAATAAATGGAATCCATTCATGTGCTAACACATTTTTGAGCTGGGACTCAATTATAGACAACTTTGTTGCACCGGAACTTGGCATCAGATCAAGTCGAGACAAGCTACTTGAGACCATGCGCATGTTACATGGTCTGTACATTCCCCTGAGACTGAGTTCGAGACTTGGCTGCCCCTTCTTTCCATCCTTTTTGACGCGCCCTCATCTCCCATGTAGCAGTCATTTTCTTTTGTGCCAATAAAAGAACCTCAGCTTTTTCCCTTGCCTCTTCACATGTCTCCATTCCAGAATTGCATTTGTCTGCTTCTTTCATATATTGGGATGTCAACTTTTTTGCTTCAAGAAGTGCCATGTCAGCCTTCCGCTGATTTTCTGAGGCTTCAGCTTCTCGCA</genome_strand>
        <mrna_strand>AAAATTTGTAAGGCAGTTGATTGCAATATTCACTCAAACTTTTACTAGTGGAATTTCAACTCAGCAGGATATATGGAAAGGCTTTGCCTTATAGTGGAACAAATGGCAATCTGTTTCAGATGACTACGCATATAGAGAGGGATATCTTATAGTGAACTCTAAACTAAAATCGTGCATATGATTCAAAATAAATGGAATCCATTCATGTGCTAACACATTTTTGAGCTGGGACTCAATTATAGACAACTTTGTTGCACCGGAACTTGGCATCAGATCAAGTCGAGACAAGCTACTTGAGACCATGCGCATGTTACATGGTCTGTACATTCCCCTGAGACTGAGTTCGAGACTTGGCTGCCCCTTCTTTCCATCCTTTTTGACGCGCCCTCATCTCCCATGTAGCAGTCATTTTCTTTTGTGCCAATAAAAGAACCTCAGCTTTTTCCCTTGCCTCTTCACATGTCTCCATTCCAGAATTGCATTTGTCTGCTTCTTTCATATATTGGGATGTCAACTTTTTTGCTTCAAGAAGTGCCATGTCAGCCTTCCGCTGATTTTCTGAGGCTTCAGCTTCTCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392003" ref_strand="+" ref_description="SGN-E392003 [TUS-24-I4](-)">
      <seq>agttgggggaagacacggaaaaaaactttgctggatttgttgtatgaggaacttaaactgcgagaagctgaagcttcagaaaatcagcggaaggctgacatggcactttttgaagcaaaaaagttgacatcccaatatatgaaagaagcagacaaatgcaattctggaatggagacatgtgaagaggcaagggaaaaagctgaggttcttttattggcacaaaagaaaatgactgctacatgggagatgagggcgcgtcaaaaaggatggaaagaaggggcagccaagtctcgaattcagtttcaggggaatgtacagaccatgtaacatgcgcatggtttcaagtagcttgtctcgacttgatctgatgccaagttccggtgcaacaaagttgtctataattgagtcccagctcaaaaatgtgttagcacatgaatggattccatttattttgaatcatatgcacgattttagtttagagttcactataacatatccctctctatatgcgtagtcatctgaaacagattgccatttgttccactataaggcaaagcctttccatatatcctgctgagttgaaattccactagtaaaagtttgagtgaatattgcaatcaactgccttacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="54656" stop="53426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54356" g_stop="53727" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="633" polyA_stop="647"/>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E392003" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54356" e_stop="53727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTT-GGTGAAGACACGGAAAAAAACTTTGCT-GATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAGATTGCCATTTGTTCCACTATAAGGCAAAGCCTTTCCATATATCCTGCTGAGTTGAAATTCCACTAGTAAAAGTTTGAGTGAATATTGCAATCAACTGCCTTACAA</genome_strand>
        <mrna_strand>AGTTGGGGGAAGACACGGAAAAAAACTTTGCTGGATTTGTTGTATGAGGAACTTAAACTGCGAGAAGCTGAAGCTTCAGAAAATCAGCGGAAGGCTGACATGGCACTTTTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAATTCAGTTTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTTTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAACATATCCCTCTCTATATGCGTAGTCATCTGAAACAGATTGCCATTTGTTCCACTATAAGGCAAAGCCTTTCCATATATCCTGCTGAGTTGAAATTCCACTAGTAAAAGTTTGAGTGAATATTGCAATCAACTGCCTTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746063" ref_strand="+" ref_description="SGN-E746063 [GI|47105339]">
      <seq>aacagaacgaccaatggcgttgaatcaagcaggaagatcatcaccatgtagtcctagggtgttgaaatctgtattgggtctaatggcaattagtttggcagcctatattttgggtcctcctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgtaattgtgactgcaattcggaacccttcttttttattcccccaggtttgagcaatgtttctttgacagattgtgctaagcgtgatccagaagttggtgaagacacggaaaaaaactttgctgatttgttgtctgaggaacttaaactgcgagaagctgaagcctcagaaaatcagcggaaggctgacatggcacttcttgaagcaaaaaagttgacatcccaatatatgaaagaagcagacaaatgcaattctggaatggagacatgtgaagaggcaagggaaaaagctgaggttcttttattggcacaaaagaaaatgactgctacatgggagatgagggcgcgtcaaaaaggatggaaagaaggggcagccaagtctcgaactcagtctcaggggaatgtacagaccatgtaacatgcgcatggtctcaagtagcttgtctcgacttgatctgatgccaagttccggtgcaacaaagttgtctataattgagtcccagctcaaaaatgtgttagcacatgaatggattccatttattttgaatcatatgcacgattttagtttagagttcactataagatatccctctctatatgcgtagtcatctgaaacagattgccatttgttccactataaggcaaagcctttccatatatcctgctgagttgaaattccactagtaaaagtttgagtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57680" stop="53448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57380" g_stop="57145" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57144" i_stop="56166" i_length="979">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56165" g_stop="56142" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="260" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56141" i_stop="54379" i_length="1763">
            <donor d_prob="0.817" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54378" g_stop="53735" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="904" r_length="644" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E746063" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57380" e_stop="57145"/>
          <exon e_start="56165" e_stop="56142"/>
          <exon e_start="54378" e_stop="53735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGCTTGTTTCATGAATGTGTTAACGTGAATTGAACTATTCCCCAATCATTCTGCTTGTTGTTATATGTCGTTTGGGATTATTTGGAGGAAGGGCGGGAGTCAGGATGTGTGGGTTAGAAAATTTGCTATCAACTTTGAATAATGTCTAAAAATACTATTTGCTTTTCCTCCTTATGAGTTATGAAACCTGTTGTCTTGAAGTCGTGGCTGATATGGTTAATTAGTTTGGTGACCTTCACATGTTTCTTGTGAGTTTGAGATATATTAAATTCTTCTGGTTTTCCTTTTCGTAATATAGTAAATCTTGAACAATTTGGAACTCACCTATCTTAAAACTGGGAGTTTTTAGTGATAGCTTTTGGTCTTTGTCCTTTGAATGGACCATAGTGGAGCCATGGAAGATTTCTCTTGCTTACTTGCCATGCTTGTTCAGCAGAATTGACATTTCCTATGATCTGGACACCATGTCTTTTTCTTAGGGTTGTTTAGAGTATCTGGTTACGTGAGGATATTGGTTTGTCGAGTATTGCTCCCATTGACTTCTTATTTTTGTATGTCTTGCAGGTTTGAGCAATGTTTCTTTGACAGGTTAGTGTCATGAGATCTTTGGCAGTTCTTTAGTTTTCTTTGATTATGGTATCATTTATTTTTTGATCCGATGGAAGATTTCATCAAGTCATCATTTTCTTCTTCTAGCTTTTATCATTTACCTTTCTTAACATTGAGATCATCAACACTTTGTATTCTACGTTTTCATGAACTTTATTATCATAGGAATATGTTTGGGTTCGTATTTCGACTTTGAGCTTGAGGGGTTTTTAACCATTCTAGGTTGGTGTTGTCAAATGCTCTCTCCCTCTAAGTTATGTCAGAGATTTTCCGTTGGACTCCATATTTACCTTAATGTAAATAGGCCTGCAGATGAAATATTAGTAAGGGCTTCTAATATGATTTGTGTTTTTTTATAAGGAAAAAAAAAACGAACCCGTATTTTCTCTTGAATAACCTGCTTATGTACTGATCGAACCCTTATATTTTCTTGAATAACCTGCTTTCTTCTGTTATGACTCTCAGAATGATACCTTGATTGGAAGCTATTACGTGACACATGAAAATATTAGCTTTGGCAACTTAACACCTGAGGTGATATAACCCTTGGATTTCCCTTGTATGACACCTGCCTTCGTCAAGGACATTGTTTTGGACTTTTGATGGATCCCCTGATTGCCACAACTACATTTAACATGAAAAAGGCAGTAGCTTGATACTCCCTTTGTCCAACAATAGTTGTCCACTATTGACTTGCCACACCTTAAAAAACAATAAATAATAGGGGTAATATTACTATATTATCATTTGAATTTATTAAATTTTATGCTTTGAGAAATGTGTAGATGATAAATAGTATTTAATAGCAAGTTTAAAATAGACACAAAAAGGTAAATTATTTCTTGGTTTTCCAAAAGGACAAGTATTGTTGGACAACTATTTTTAGTAGAGTGGACAACTATTGTTGGACAGAGGAGCATAGAAGCTACTTACAACAACTTAATGGATCCAAAAATTCGGACAAGTATTTCTACGAAATTCTATGAGCATTTCCACTGGTAGCCTGATAACAACTTCGAAGAATTTCTGGACATGCCTTCCTCGTCCCCCTCTCTATCTTTTATCAGTTTCTCTCCTCAATATGGATTCATTTTGGCTACTAAAACAACAATAGCATACTTTTTCTGCAGAAGATTACCAGCTCTTTTTTTTTGTCGAAGTGGAAGGATCGCAGCATAGTTGTGATTAATTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCAATGTTTTGCAGATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAGATTGCCATTTGTTCCACTATAAGGCAAAGCCTTTCCATATATCCTGCTGAGTTGAAATTCCACTAGTAAAAGTTTGAGTGAATATTGCAATCAACTG</genome_strand>
        <mrna_strand>AACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGCAATGTTTCTTTGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAGATTGCCATTTGTTCCACTATAAGGCAAAGCCTTTCCATATATCCTGCTGAGTTGAAATTCCACTAGTAAAAGTTTGAGTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308288" ref_strand="+" ref_description="SGN-E308288 [cLEZ-6-C3](-)">
      <seq>ccaagttccggtgcaacaaagttgtctataattgagtcccagctcaaaaatgtgttagcacatgaatggattccatttattttgaatcatatgcacgattttagtttagagttcactataagatatccctctctatatgcgtagtcatctgaaacagattgccatttgttccactataaggcaaagcctttccatatatcctgctgagttgaaattccactagtaaaagtttgagtgaatattgcaatcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="54288" stop="53437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53988" g_stop="53737" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E308288" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53988" e_stop="53737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAGATTGCCATTTGTTCCACTATAAGGCAAAGCCTTTCCATATATCCTGCTGAGTTGAAATTCCACTAGTAAAAGTTTGAGTGAATATTGCAATCAAC</genome_strand>
        <mrna_strand>CCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAGATTGCCATTTGTTCCACTATAAGGCAAAGCCTTTCCATATATCCTGCTGAGTTGAAATTCCACTAGTAAAAGTTTGAGTGAATATTGCAATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701137" ref_strand="+" ref_description="SGN-E701137 [FA15AE09]">
      <seq>gaaatctgtattgggtctaatggcaattagtttggcagcctatattttgggtcctcctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgtaattgtgactgcaattcggaacccttcttttttattcccccaggtttgagcaatgtttctttgacagattgtgctaagcgtgatccagaagttggtgaagacacggaaaaaaactttgctgatttgttgtctgaggaacttaaactgcgagaagctgaagcctcagaaaatcagcggaaggctgacatggcacttcttgaagcaaaaaagttgacatcccaatatatgaaagaagcagacaaatgcaattctggaatggagacatgtgaagaggcaagggaaaaagctgaggttcttttattggcacaaaagaaaatgactgctacatgggagatgagggcgcgtcaaaaaggatggaaagaaggggcagccaagtctcgaactcagtctcaggggaatgtacagaccatgtaacatgcgcatggtctcaagtagcttgtctcgacttgatctgatgccaagttccggtgcaacaaagttgtctataattgagtcccagctcaaaaatgtgttagcacatgaatggattccatttattttgaatcatatgcacgattttagtttagagttcactataagatatccctctctatatgcgtagtcatctgaaacagattgccattttgttccactataaagcaaagccttttcatatatcctgctgagttgaaattccactaataaaagtttgagtgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57617" stop="53448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57317" g_stop="57145" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57144" i_stop="56166" i_length="979">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56165" g_stop="56142" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="197" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56141" i_stop="54379" i_length="1763">
            <donor d_prob="0.817" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54378" g_stop="53743" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="834" r_length="637" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E701137" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57317" e_stop="57145"/>
          <exon e_start="56165" e_stop="56142"/>
          <exon e_start="54378" e_stop="53743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGCTTGTTTCATGAATGTGTTAACGTGAATTGAACTATTCCCCAATCATTCTGCTTGTTGTTATATGTCGTTTGGGATTATTTGGAGGAAGGGCGGGAGTCAGGATGTGTGGGTTAGAAAATTTGCTATCAACTTTGAATAATGTCTAAAAATACTATTTGCTTTTCCTCCTTATGAGTTATGAAACCTGTTGTCTTGAAGTCGTGGCTGATATGGTTAATTAGTTTGGTGACCTTCACATGTTTCTTGTGAGTTTGAGATATATTAAATTCTTCTGGTTTTCCTTTTCGTAATATAGTAAATCTTGAACAATTTGGAACTCACCTATCTTAAAACTGGGAGTTTTTAGTGATAGCTTTTGGTCTTTGTCCTTTGAATGGACCATAGTGGAGCCATGGAAGATTTCTCTTGCTTACTTGCCATGCTTGTTCAGCAGAATTGACATTTCCTATGATCTGGACACCATGTCTTTTTCTTAGGGTTGTTTAGAGTATCTGGTTACGTGAGGATATTGGTTTGTCGAGTATTGCTCCCATTGACTTCTTATTTTTGTATGTCTTGCAGGTTTGAGCAATGTTTCTTTGACAGGTTAGTGTCATGAGATCTTTGGCAGTTCTTTAGTTTTCTTTGATTATGGTATCATTTATTTTTTGATCCGATGGAAGATTTCATCAAGTCATCATTTTCTTCTTCTAGCTTTTATCATTTACCTTTCTTAACATTGAGATCATCAACACTTTGTATTCTACGTTTTCATGAACTTTATTATCATAGGAATATGTTTGGGTTCGTATTTCGACTTTGAGCTTGAGGGGTTTTTAACCATTCTAGGTTGGTGTTGTCAAATGCTCTCTCCCTCTAAGTTATGTCAGAGATTTTCCGTTGGACTCCATATTTACCTTAATGTAAATAGGCCTGCAGATGAAATATTAGTAAGGGCTTCTAATATGATTTGTGTTTTTTTATAAGGAAAAAAAAAACGAACCCGTATTTTCTCTTGAATAACCTGCTTATGTACTGATCGAACCCTTATATTTTCTTGAATAACCTGCTTTCTTCTGTTATGACTCTCAGAATGATACCTTGATTGGAAGCTATTACGTGACACATGAAAATATTAGCTTTGGCAACTTAACACCTGAGGTGATATAACCCTTGGATTTCCCTTGTATGACACCTGCCTTCGTCAAGGACATTGTTTTGGACTTTTGATGGATCCCCTGATTGCCACAACTACATTTAACATGAAAAAGGCAGTAGCTTGATACTCCCTTTGTCCAACAATAGTTGTCCACTATTGACTTGCCACACCTTAAAAAACAATAAATAATAGGGGTAATATTACTATATTATCATTTGAATTTATTAAATTTTATGCTTTGAGAAATGTGTAGATGATAAATAGTATTTAATAGCAAGTTTAAAATAGACACAAAAAGGTAAATTATTTCTTGGTTTTCCAAAAGGACAAGTATTGTTGGACAACTATTTTTAGTAGAGTGGACAACTATTGTTGGACAGAGGAGCATAGAAGCTACTTACAACAACTTAATGGATCCAAAAATTCGGACAAGTATTTCTACGAAATTCTATGAGCATTTCCACTGGTAGCCTGATAACAACTTCGAAGAATTTCTGGACATGCCTTCCTCGTCCCCCTCTCTATCTTTTATCAGTTTCTCTCCTCAATATGGATTCATTTTGGCTACTAAAACAACAATAGCATACTTTTTCTGCAGAAGATTACCAGCTCTTTTTTTTTGTCGAAGTGGAAGGATCGCAGCATAGTTGTGATTAATTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCAATGTTTTGCAGATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAGATTGCCATTT-GTTCCACTATAAGGCAAAGCCTTTCCATATATCCTGCTGAGTTGAAATTCCACTAGTAAAAGTTTGAGTGAATATTGCA</genome_strand>
        <mrna_strand>GAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGCAATGTTTCTTTGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAGATTGCCATTTTGTTCCACTATAAAGCAAAGCCTTTTCATATATCCTGCTGAGTTGAAATTCCACTAATAAAAGTTTGAGTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730593" ref_strand="+" ref_description="SGN-E730593 [LA24CD08]">
      <seq>ctttctcaaaattgttttttccaacttctccgtttactggccagtagaaaaagcaaacagaacgaccaatggcgttgaatcaagcaggaagatcatcaccatgtagtcctagggtgttgaaatctgtattgggtctaatggcaattagtttggcagcctatattttgggtcctcctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgtaattgtgactgcaattcggaacccttcttttttattcccccaggtttgagcaatgtttctttgacagattgtgctaagcgtgatccagaagttggtgaagacacggaaaaaaactttgctgatttgttgtctgaggaacttaaactgcgagaagctgaagcctcagaaaatcagcggaaggctgacatggcacttcttgaagcaaaaaagttgacatcccaatatatgaaagaagcagacaaatgcaattctggaatggagacatgtgaagaggcaagggaaaaagctgaggttcttttattggcacaaaagaaaatgactgctacatgggagatgagggcgcgtcaaaaaggatggaaagaaggggcagccaagtctcgaactcagtctcaggggaatgtacagaccatgtaacatgcgcatggtctcaagtagcttgtctcgacttgatctgatgccaagttccggtgcaacaaagttgtctataattgagtcccagctcaacaatgtgttagcacatgaatggattccatttattttgaatcatatgcacgattttagtttagagttcactataagatatccctctctatatgcgtagtcatctgaaacagattgccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57731" stop="53523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57435" g_stop="57145" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57144" i_stop="56166" i_length="979">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56165" g_stop="56142" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="315" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56141" i_stop="54379" i_length="1763">
            <donor d_prob="0.817" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54378" g_stop="53823" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="871" r_length="556" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E730593" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57435" e_stop="57145"/>
          <exon e_start="56165" e_stop="56142"/>
          <exon e_start="54378" e_stop="53823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGCTTGTTTCATGAATGTGTTAACGTGAATTGAACTATTCCCCAATCATTCTGCTTGTTGTTATATGTCGTTTGGGATTATTTGGAGGAAGGGCGGGAGTCAGGATGTGTGGGTTAGAAAATTTGCTATCAACTTTGAATAATGTCTAAAAATACTATTTGCTTTTCCTCCTTATGAGTTATGAAACCTGTTGTCTTGAAGTCGTGGCTGATATGGTTAATTAGTTTGGTGACCTTCACATGTTTCTTGTGAGTTTGAGATATATTAAATTCTTCTGGTTTTCCTTTTCGTAATATAGTAAATCTTGAACAATTTGGAACTCACCTATCTTAAAACTGGGAGTTTTTAGTGATAGCTTTTGGTCTTTGTCCTTTGAATGGACCATAGTGGAGCCATGGAAGATTTCTCTTGCTTACTTGCCATGCTTGTTCAGCAGAATTGACATTTCCTATGATCTGGACACCATGTCTTTTTCTTAGGGTTGTTTAGAGTATCTGGTTACGTGAGGATATTGGTTTGTCGAGTATTGCTCCCATTGACTTCTTATTTTTGTATGTCTTGCAGGTTTGAGCAATGTTTCTTTGACAGGTTAGTGTCATGAGATCTTTGGCAGTTCTTTAGTTTTCTTTGATTATGGTATCATTTATTTTTTGATCCGATGGAAGATTTCATCAAGTCATCATTTTCTTCTTCTAGCTTTTATCATTTACCTTTCTTAACATTGAGATCATCAACACTTTGTATTCTACGTTTTCATGAACTTTATTATCATAGGAATATGTTTGGGTTCGTATTTCGACTTTGAGCTTGAGGGGTTTTTAACCATTCTAGGTTGGTGTTGTCAAATGCTCTCTCCCTCTAAGTTATGTCAGAGATTTTCCGTTGGACTCCATATTTACCTTAATGTAAATAGGCCTGCAGATGAAATATTAGTAAGGGCTTCTAATATGATTTGTGTTTTTTTATAAGGAAAAAAAAAACGAACCCGTATTTTCTCTTGAATAACCTGCTTATGTACTGATCGAACCCTTATATTTTCTTGAATAACCTGCTTTCTTCTGTTATGACTCTCAGAATGATACCTTGATTGGAAGCTATTACGTGACACATGAAAATATTAGCTTTGGCAACTTAACACCTGAGGTGATATAACCCTTGGATTTCCCTTGTATGACACCTGCCTTCGTCAAGGACATTGTTTTGGACTTTTGATGGATCCCCTGATTGCCACAACTACATTTAACATGAAAAAGGCAGTAGCTTGATACTCCCTTTGTCCAACAATAGTTGTCCACTATTGACTTGCCACACCTTAAAAAACAATAAATAATAGGGGTAATATTACTATATTATCATTTGAATTTATTAAATTTTATGCTTTGAGAAATGTGTAGATGATAAATAGTATTTAATAGCAAGTTTAAAATAGACACAAAAAGGTAAATTATTTCTTGGTTTTCCAAAAGGACAAGTATTGTTGGACAACTATTTTTAGTAGAGTGGACAACTATTGTTGGACAGAGGAGCATAGAAGCTACTTACAACAACTTAATGGATCCAAAAATTCGGACAAGTATTTCTACGAAATTCTATGAGCATTTCCACTGGTAGCCTGATAACAACTTCGAAGAATTTCTGGACATGCCTTCCTCGTCCCCCTCTCTATCTTTTATCAGTTTCTCTCCTCAATATGGATTCATTTTGGCTACTAAAACAACAATAGCATACTTTTTCTGCAGAAGATTACCAGCTCTTTTTTTTTGTCGAAGTGGAAGGATCGCAGCATAGTTGTGATTAATTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCAATGTTTTGCAGATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAGATTGCCATT</genome_strand>
        <mrna_strand>CTTTCTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGCAATGTTTCTTTGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAACAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAGATTGCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230397" ref_strand="+" ref_description="SGN-E230397 [cLEL-35-H21](-)">
      <seq>caattctggaatgaaaacatgtgaaaaggcaagggaaaaagctaaggttcttttattggcacaaaagaaaatgactgctacatgggagatgagggcgcgtcaaaaaggatggaaagaaggggcagccaagtctcgaactcagtctcaggggaatgtacagaccatgtaacatgcgcatggtctcaagtagcttgtctcgacttgatctgatgccaagttccggtgcaacaaagttgtctataattgagtcccagctcaaaaatgtgttagcacatgaatggattccatttattttgaatcatatgcacgattttagtttagagttcaaaaaaaanaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="54500" stop="53564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54200" g_stop="53867" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E230397" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54200" e_stop="53867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAG</genome_strand>
        <mrna_strand>CAATTCTGGAATGAAAACATGTGAAAAGGCAAGGGAAAAAGCTAAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214115" ref_strand="+" ref_description="SGN-E214115 [cLEC-80-O20]">
      <seq>ttactggccagtagaaaaagcaaacagaacgaccaatggcgttgaatcaagcaggaagatcatcaccatgtagtcctagggtgttgaaatctgtattgggtctaatggcaattagtttggcagcctatattttgggtcctcctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgtaattgtgactgcaattcggaacccttcttttttattccccgaggtttgagcaatgtttctttgacagattgtgctaagcgtgatccagaagttggtgaagacacggaaaaaaactttgctgatttgttgtctgaggaacttaaactgcgagaagctgaagcctcagaaaatcagcggaaggctgacatggcacttcttgaagcaaaaaagttgacatcccaatatatgaaagaagcagacaaatgcaattctggaatggagacatgtgaagaggcaagggaaaaagctgaggttcttttattggcacaaaagaaaatgactgctacatgggagatgagggcgcgtcaaaaaggatggaaagaaggggcagccaagtctcgaactcagtctcaggggaatgtacagaccatgtaacatgcgcatggtctcaagtagcttgtctcgacttgatctgatgccaagttccggtgcaacaaagttgtctataattgagtcccagctcaaaatgtgttagcacatgaatggattccatttatttttgatcatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57702" stop="53596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57402" g_stop="57145" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57144" i_stop="56166" i_length="979">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56165" g_stop="56142" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="282" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56141" i_stop="54379" i_length="1763">
            <donor d_prob="0.817" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54378" g_stop="53896" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="764" r_length="482" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E214115" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57402" e_stop="57145"/>
          <exon e_start="56165" e_stop="56142"/>
          <exon e_start="54378" e_stop="53896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGCTTGTTTCATGAATGTGTTAACGTGAATTGAACTATTCCCCAATCATTCTGCTTGTTGTTATATGTCGTTTGGGATTATTTGGAGGAAGGGCGGGAGTCAGGATGTGTGGGTTAGAAAATTTGCTATCAACTTTGAATAATGTCTAAAAATACTATTTGCTTTTCCTCCTTATGAGTTATGAAACCTGTTGTCTTGAAGTCGTGGCTGATATGGTTAATTAGTTTGGTGACCTTCACATGTTTCTTGTGAGTTTGAGATATATTAAATTCTTCTGGTTTTCCTTTTCGTAATATAGTAAATCTTGAACAATTTGGAACTCACCTATCTTAAAACTGGGAGTTTTTAGTGATAGCTTTTGGTCTTTGTCCTTTGAATGGACCATAGTGGAGCCATGGAAGATTTCTCTTGCTTACTTGCCATGCTTGTTCAGCAGAATTGACATTTCCTATGATCTGGACACCATGTCTTTTTCTTAGGGTTGTTTAGAGTATCTGGTTACGTGAGGATATTGGTTTGTCGAGTATTGCTCCCATTGACTTCTTATTTTTGTATGTCTTGCAGGTTTGAGCAATGTTTCTTTGACAGGTTAGTGTCATGAGATCTTTGGCAGTTCTTTAGTTTTCTTTGATTATGGTATCATTTATTTTTTGATCCGATGGAAGATTTCATCAAGTCATCATTTTCTTCTTCTAGCTTTTATCATTTACCTTTCTTAACATTGAGATCATCAACACTTTGTATTCTACGTTTTCATGAACTTTATTATCATAGGAATATGTTTGGGTTCGTATTTCGACTTTGAGCTTGAGGGGTTTTTAACCATTCTAGGTTGGTGTTGTCAAATGCTCTCTCCCTCTAAGTTATGTCAGAGATTTTCCGTTGGACTCCATATTTACCTTAATGTAAATAGGCCTGCAGATGAAATATTAGTAAGGGCTTCTAATATGATTTGTGTTTTTTTATAAGGAAAAAAAAAACGAACCCGTATTTTCTCTTGAATAACCTGCTTATGTACTGATCGAACCCTTATATTTTCTTGAATAACCTGCTTTCTTCTGTTATGACTCTCAGAATGATACCTTGATTGGAAGCTATTACGTGACACATGAAAATATTAGCTTTGGCAACTTAACACCTGAGGTGATATAACCCTTGGATTTCCCTTGTATGACACCTGCCTTCGTCAAGGACATTGTTTTGGACTTTTGATGGATCCCCTGATTGCCACAACTACATTTAACATGAAAAAGGCAGTAGCTTGATACTCCCTTTGTCCAACAATAGTTGTCCACTATTGACTTGCCACACCTTAAAAAACAATAAATAATAGGGGTAATATTACTATATTATCATTTGAATTTATTAAATTTTATGCTTTGAGAAATGTGTAGATGATAAATAGTATTTAATAGCAAGTTTAAAATAGACACAAAAAGGTAAATTATTTCTTGGTTTTCCAAAAGGACAAGTATTGTTGGACAACTATTTTTAGTAGAGTGGACAACTATTGTTGGACAGAGGAGCATAGAAGCTACTTACAACAACTTAATGGATCCAAAAATTCGGACAAGTATTTCTACGAAATTCTATGAGCATTTCCACTGGTAGCCTGATAACAACTTCGAAGAATTTCTGGACATGCCTTCCTCGTCCCCCTCTCTATCTTTTATCAGTTTCTCTCCTCAATATGGATTCATTTTGGCTACTAAAACAACAATAGCATACTTTTTCTGCAGAAGATTACCAGCTCTTTTTTTTTGTCGAAGTGGAAGGATCGCAGCATAGTTGTGATTAATTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCAATGTTTTGCAGATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATG</genome_strand>
        <mrna_strand>TTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGCAATGTTTCTTTGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTC-AAAATGTGTTAGCACATGAATGGATTCCATTTATTTTTGATCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211385" ref_strand="+" ref_description="SGN-E211385 [cLEC-67-I11]">
      <seq>ttactggccagtagaaaaagcaaacagaacgaccaatggcgttgaatcaagcaggaagatcatcaccatgtagtcctagggtgttgaaatctgtattgggtctaatggcaattagtttggcagcctatattttgggtcctcctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgtaattgtgactgcaattcggaacccttcttttttattcccccaggtttgagcaatgtttctttgacagattgtgctaagcgtgatccagaagttggtgaagacacggaaaaaaactttgctgatttgttgtctgaggaacttaaactgcgagaagctgaagcctcagaaaatcagcggaaggctgacatggcacttcttgaagcaaaaaagttgacatcccaatatatgaaagaagcagacaaatgcaattctggaatggagacatgtgaagaggcaagggaaaaagctgaggttcttttattggcacaaaagaaaatgactgctacatgggagatgagggcgcgtcaaaaaggatggaaagaaggggcagccaagtctcgaactcagtctcaggggaatgtacagaccatgtaacatgcgcatggtctcaagtagcttgtctcgacttgatctgatgccaagttccggtgcaacaaagttgtctataattgagtcccagctcaaaatgtgttagcacatgaatggattccatttatttttgatcatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57702" stop="53596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57402" g_stop="57145" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57144" i_stop="56166" i_length="979">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56165" g_stop="56142" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="282" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56141" i_stop="54379" i_length="1763">
            <donor d_prob="0.817" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54378" g_stop="53896" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="764" r_length="482" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E211385" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57402" e_stop="57145"/>
          <exon e_start="56165" e_stop="56142"/>
          <exon e_start="54378" e_stop="53896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGCTTGTTTCATGAATGTGTTAACGTGAATTGAACTATTCCCCAATCATTCTGCTTGTTGTTATATGTCGTTTGGGATTATTTGGAGGAAGGGCGGGAGTCAGGATGTGTGGGTTAGAAAATTTGCTATCAACTTTGAATAATGTCTAAAAATACTATTTGCTTTTCCTCCTTATGAGTTATGAAACCTGTTGTCTTGAAGTCGTGGCTGATATGGTTAATTAGTTTGGTGACCTTCACATGTTTCTTGTGAGTTTGAGATATATTAAATTCTTCTGGTTTTCCTTTTCGTAATATAGTAAATCTTGAACAATTTGGAACTCACCTATCTTAAAACTGGGAGTTTTTAGTGATAGCTTTTGGTCTTTGTCCTTTGAATGGACCATAGTGGAGCCATGGAAGATTTCTCTTGCTTACTTGCCATGCTTGTTCAGCAGAATTGACATTTCCTATGATCTGGACACCATGTCTTTTTCTTAGGGTTGTTTAGAGTATCTGGTTACGTGAGGATATTGGTTTGTCGAGTATTGCTCCCATTGACTTCTTATTTTTGTATGTCTTGCAGGTTTGAGCAATGTTTCTTTGACAGGTTAGTGTCATGAGATCTTTGGCAGTTCTTTAGTTTTCTTTGATTATGGTATCATTTATTTTTTGATCCGATGGAAGATTTCATCAAGTCATCATTTTCTTCTTCTAGCTTTTATCATTTACCTTTCTTAACATTGAGATCATCAACACTTTGTATTCTACGTTTTCATGAACTTTATTATCATAGGAATATGTTTGGGTTCGTATTTCGACTTTGAGCTTGAGGGGTTTTTAACCATTCTAGGTTGGTGTTGTCAAATGCTCTCTCCCTCTAAGTTATGTCAGAGATTTTCCGTTGGACTCCATATTTACCTTAATGTAAATAGGCCTGCAGATGAAATATTAGTAAGGGCTTCTAATATGATTTGTGTTTTTTTATAAGGAAAAAAAAAACGAACCCGTATTTTCTCTTGAATAACCTGCTTATGTACTGATCGAACCCTTATATTTTCTTGAATAACCTGCTTTCTTCTGTTATGACTCTCAGAATGATACCTTGATTGGAAGCTATTACGTGACACATGAAAATATTAGCTTTGGCAACTTAACACCTGAGGTGATATAACCCTTGGATTTCCCTTGTATGACACCTGCCTTCGTCAAGGACATTGTTTTGGACTTTTGATGGATCCCCTGATTGCCACAACTACATTTAACATGAAAAAGGCAGTAGCTTGATACTCCCTTTGTCCAACAATAGTTGTCCACTATTGACTTGCCACACCTTAAAAAACAATAAATAATAGGGGTAATATTACTATATTATCATTTGAATTTATTAAATTTTATGCTTTGAGAAATGTGTAGATGATAAATAGTATTTAATAGCAAGTTTAAAATAGACACAAAAAGGTAAATTATTTCTTGGTTTTCCAAAAGGACAAGTATTGTTGGACAACTATTTTTAGTAGAGTGGACAACTATTGTTGGACAGAGGAGCATAGAAGCTACTTACAACAACTTAATGGATCCAAAAATTCGGACAAGTATTTCTACGAAATTCTATGAGCATTTCCACTGGTAGCCTGATAACAACTTCGAAGAATTTCTGGACATGCCTTCCTCGTCCCCCTCTCTATCTTTTATCAGTTTCTCTCCTCAATATGGATTCATTTTGGCTACTAAAACAACAATAGCATACTTTTTCTGCAGAAGATTACCAGCTCTTTTTTTTTGTCGAAGTGGAAGGATCGCAGCATAGTTGTGATTAATTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCAATGTTTTGCAGATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATG</genome_strand>
        <mrna_strand>TTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGCAATGTTTCTTTGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTC-AAAATGTGTTAGCACATGAATGGATTCCATTTATTTTTGATCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702421" ref_strand="+" ref_description="SGN-E702421 [FA18CF12]">
      <seq>tgaaaagcggagaaaaaaaaaacagctgatctttcttccacactctcattcatctgctattggtctccataagtaagcacaaaactaacaatttaactcaaaattgttttttccaacttctccgtttactggccagtagaaaaagcaaacagaacgaccaatggcgttgaatcaagcaggaagatcatcaccatgtagtcctagggtgttgaaatctgtattgggtctaatggcaattagtttggcagcctatattttgggtcctcctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgtaattgtgactgcaattcggaacccttcttttttattcccccaggtttgagcaatgtttctttgacagattgtgctaagcgtgatccaaaagttggtgaagacacggaaaaaaactttgctgatttgttgtctgaggaacttaaactgcgagaagctgaagcctcaaaaaatcagcggaaggctgacatggcacttcttgaagcaaaaaagttgacatcccaatatatgaaagaagcagacaaatgcaattctggaatggagacatgtgaagaggcaagggaaaaagctgaggttcttttattggcacaaaagaaaatgactgctacatgggagatgagggcgcgtcaaaaaggatggaaagaaggggcagccaagtctcgaactcagtctcaggggaatgtacagaccatgtaacatgcgcatggtctcaagtagcttgtctcgacttgatctgatgccaagttccggtgcaacaaagttgtctataattgagtcccacctcaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57827" stop="53638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57527" g_stop="57145" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57144" i_stop="56166" i_length="979">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56165" g_stop="56142" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="407" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56141" i_stop="54379" i_length="1763">
            <donor d_prob="0.817" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54378" g_stop="53938" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="848" r_length="441" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E702421" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57527" e_stop="57145"/>
          <exon e_start="56165" e_stop="56142"/>
          <exon e_start="54378" e_stop="53938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAGCGGAGAAAAAAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGCTTGTTTCATGAATGTGTTAACGTGAATTGAACTATTCCCCAATCATTCTGCTTGTTGTTATATGTCGTTTGGGATTATTTGGAGGAAGGGCGGGAGTCAGGATGTGTGGGTTAGAAAATTTGCTATCAACTTTGAATAATGTCTAAAAATACTATTTGCTTTTCCTCCTTATGAGTTATGAAACCTGTTGTCTTGAAGTCGTGGCTGATATGGTTAATTAGTTTGGTGACCTTCACATGTTTCTTGTGAGTTTGAGATATATTAAATTCTTCTGGTTTTCCTTTTCGTAATATAGTAAATCTTGAACAATTTGGAACTCACCTATCTTAAAACTGGGAGTTTTTAGTGATAGCTTTTGGTCTTTGTCCTTTGAATGGACCATAGTGGAGCCATGGAAGATTTCTCTTGCTTACTTGCCATGCTTGTTCAGCAGAATTGACATTTCCTATGATCTGGACACCATGTCTTTTTCTTAGGGTTGTTTAGAGTATCTGGTTACGTGAGGATATTGGTTTGTCGAGTATTGCTCCCATTGACTTCTTATTTTTGTATGTCTTGCAGGTTTGAGCAATGTTTCTTTGACAGGTTAGTGTCATGAGATCTTTGGCAGTTCTTTAGTTTTCTTTGATTATGGTATCATTTATTTTTTGATCCGATGGAAGATTTCATCAAGTCATCATTTTCTTCTTCTAGCTTTTATCATTTACCTTTCTTAACATTGAGATCATCAACACTTTGTATTCTACGTTTTCATGAACTTTATTATCATAGGAATATGTTTGGGTTCGTATTTCGACTTTGAGCTTGAGGGGTTTTTAACCATTCTAGGTTGGTGTTGTCAAATGCTCTCTCCCTCTAAGTTATGTCAGAGATTTTCCGTTGGACTCCATATTTACCTTAATGTAAATAGGCCTGCAGATGAAATATTAGTAAGGGCTTCTAATATGATTTGTGTTTTTTTATAAGGAAAAAAAAAACGAACCCGTATTTTCTCTTGAATAACCTGCTTATGTACTGATCGAACCCTTATATTTTCTTGAATAACCTGCTTTCTTCTGTTATGACTCTCAGAATGATACCTTGATTGGAAGCTATTACGTGACACATGAAAATATTAGCTTTGGCAACTTAACACCTGAGGTGATATAACCCTTGGATTTCCCTTGTATGACACCTGCCTTCGTCAAGGACATTGTTTTGGACTTTTGATGGATCCCCTGATTGCCACAACTACATTTAACATGAAAAAGGCAGTAGCTTGATACTCCCTTTGTCCAACAATAGTTGTCCACTATTGACTTGCCACACCTTAAAAAACAATAAATAATAGGGGTAATATTACTATATTATCATTTGAATTTATTAAATTTTATGCTTTGAGAAATGTGTAGATGATAAATAGTATTTAATAGCAAGTTTAAAATAGACACAAAAAGGTAAATTATTTCTTGGTTTTCCAAAAGGACAAGTATTGTTGGACAACTATTTTTAGTAGAGTGGACAACTATTGTTGGACAGAGGAGCATAGAAGCTACTTACAACAACTTAATGGATCCAAAAATTCGGACAAGTATTTCTACGAAATTCTATGAGCATTTCCACTGGTAGCCTGATAACAACTTCGAAGAATTTCTGGACATGCCTTCCTCGTCCCCCTCTCTATCTTTTATCAGTTTCTCTCCTCAATATGGATTCATTTTGGCTACTAAAACAACAATAGCATACTTTTTCTGCAGAAGATTACCAGCTCTTTTTTTTTGTCGAAGTGGAAGGATCGCAGCATAGTTGTGATTAATTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCAATGTTTTGCAGATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAAT</genome_strand>
        <mrna_strand>TGAAAAGCGGAGAAAAAAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGCAATGTTTCTTTGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCTAAGCGTGATCCAAAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAAAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCACCTCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708534" ref_strand="+" ref_description="SGN-E708534 [FA36AB07]">
      <seq>gggctaaattcccaaacgcgtcacagcagttgaaaagcggagaaaaaaaaaacagctgatctttcttccacactctcattcatctgctattggtctccataagtaagcacaaaactaacaatttaactcaaaattgttttttccaacttctccgtttactggccagtaaaaaaagcaaacagaacgaccaatggcgttgaatcaagcaggaagatcatcaccatgtagtcctagggtgttgaaatctgtattgggtctaatggcaattagtttggcagcctatattttgggtcctcctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgtaattgtgactgcaattcggaacccttcttttttattcccccaggtttgagcaatgtttctttgacagattgtgctaagcgtgatccaaaagttggtgaagacacggaaaaaaactttgctgatttgttgtctgaggaacttaaactgcgagaagctgaagcctcaaaaaatcagcggaaggctgacatggcacttcttgaagcaaaaaagttgacatcccaatatatgaaagaagcagacaaatgcaattctggaatggagacatgtgaagaggcaagggaaaaagctgaggttcttttattggcacaaaagaaaatgactgctacatgggagatgagggcgcgtcaaaaaggatggaaagaaggggcagccaagtctcgaactcagtctcaggggaatgtacagaccatgtaacatgcgcatggtctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57857" stop="53715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57557" g_stop="57145" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57144" i_stop="56166" i_length="979">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56165" g_stop="56142" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="437" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56141" i_stop="54379" i_length="1763">
            <donor d_prob="0.817" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54378" g_stop="54015" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="801" r_length="364" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E708534" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57557" e_stop="57145"/>
          <exon e_start="56165" e_stop="56142"/>
          <exon e_start="54378" e_stop="54015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCTAAATTCCCAAACGCGTCACAGCAGTTGAAAAGCGGAGAAAAAAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGCTTGTTTCATGAATGTGTTAACGTGAATTGAACTATTCCCCAATCATTCTGCTTGTTGTTATATGTCGTTTGGGATTATTTGGAGGAAGGGCGGGAGTCAGGATGTGTGGGTTAGAAAATTTGCTATCAACTTTGAATAATGTCTAAAAATACTATTTGCTTTTCCTCCTTATGAGTTATGAAACCTGTTGTCTTGAAGTCGTGGCTGATATGGTTAATTAGTTTGGTGACCTTCACATGTTTCTTGTGAGTTTGAGATATATTAAATTCTTCTGGTTTTCCTTTTCGTAATATAGTAAATCTTGAACAATTTGGAACTCACCTATCTTAAAACTGGGAGTTTTTAGTGATAGCTTTTGGTCTTTGTCCTTTGAATGGACCATAGTGGAGCCATGGAAGATTTCTCTTGCTTACTTGCCATGCTTGTTCAGCAGAATTGACATTTCCTATGATCTGGACACCATGTCTTTTTCTTAGGGTTGTTTAGAGTATCTGGTTACGTGAGGATATTGGTTTGTCGAGTATTGCTCCCATTGACTTCTTATTTTTGTATGTCTTGCAGGTTTGAGCAATGTTTCTTTGACAGGTTAGTGTCATGAGATCTTTGGCAGTTCTTTAGTTTTCTTTGATTATGGTATCATTTATTTTTTGATCCGATGGAAGATTTCATCAAGTCATCATTTTCTTCTTCTAGCTTTTATCATTTACCTTTCTTAACATTGAGATCATCAACACTTTGTATTCTACGTTTTCATGAACTTTATTATCATAGGAATATGTTTGGGTTCGTATTTCGACTTTGAGCTTGAGGGGTTTTTAACCATTCTAGGTTGGTGTTGTCAAATGCTCTCTCCCTCTAAGTTATGTCAGAGATTTTCCGTTGGACTCCATATTTACCTTAATGTAAATAGGCCTGCAGATGAAATATTAGTAAGGGCTTCTAATATGATTTGTGTTTTTTTATAAGGAAAAAAAAAACGAACCCGTATTTTCTCTTGAATAACCTGCTTATGTACTGATCGAACCCTTATATTTTCTTGAATAACCTGCTTTCTTCTGTTATGACTCTCAGAATGATACCTTGATTGGAAGCTATTACGTGACACATGAAAATATTAGCTTTGGCAACTTAACACCTGAGGTGATATAACCCTTGGATTTCCCTTGTATGACACCTGCCTTCGTCAAGGACATTGTTTTGGACTTTTGATGGATCCCCTGATTGCCACAACTACATTTAACATGAAAAAGGCAGTAGCTTGATACTCCCTTTGTCCAACAATAGTTGTCCACTATTGACTTGCCACACCTTAAAAAACAATAAATAATAGGGGTAATATTACTATATTATCATTTGAATTTATTAAATTTTATGCTTTGAGAAATGTGTAGATGATAAATAGTATTTAATAGCAAGTTTAAAATAGACACAAAAAGGTAAATTATTTCTTGGTTTTCCAAAAGGACAAGTATTGTTGGACAACTATTTTTAGTAGAGTGGACAACTATTGTTGGACAGAGGAGCATAGAAGCTACTTACAACAACTTAATGGATCCAAAAATTCGGACAAGTATTTCTACGAAATTCTATGAGCATTTCCACTGGTAGCCTGATAACAACTTCGAAGAATTTCTGGACATGCCTTCCTCGTCCCCCTCTCTATCTTTTATCAGTTTCTCTCCTCAATATGGATTCATTTTGGCTACTAAAACAACAATAGCATACTTTTTCTGCAGAAGATTACCAGCTCTTTTTTTTTGTCGAAGTGGAAGGATCGCAGCATAGTTGTGATTAATTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCAATGTTTTGCAGATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAA</genome_strand>
        <mrna_strand>GGGCTAAATTCCCAAACGCGTCACAGCAGTTGAAAAGCGGAGAAAAAAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAAAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGCAATGTTTCTTTGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCTAAGCGTGATCCAAAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAAAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699018" ref_strand="+" ref_description="SGN-E699018 [FA08BC06]">
      <seq>ccgttttttcttccacactctcattcatctgctattggtctccataagtaagcacaaaactaacaatttaactcaaaattgttttttccaacttctccgtttactggccagtagaaaaagcaaacagaacgaccaatggcgttgaatcaagcaggaagatcatcaccatgtagtcctagggtgttgaaatctgtattgggtctaatggcaattagtttggcagcctatattttgggtcctcctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgtaattgtgactgcaattcggaacccttcttttttattcccccaggtttgagcaatgtttctttgacagattgtgctaagcgtgatccagaagttggcgaagacacggaaaaaaactttgctgatttgttgtctgaggaacttaaactgcgagaagctgaagcctcagaaaatcagcggaaggctgacatggcacttcttgaagcaaaaaagttgacatcccaatatatgaaagaagcagacaaatgcaattctggaatggagacatgtgaagaggcaagggaaaaagctgaggttcttttattggcacaaaagaaaatgactgctacatgggagatgagggcgcgtcaaaaaggatggaaagaaggggcagccaagtctcgaactcaatctcaggggaatgtacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57802" stop="53741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57502" g_stop="57145" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57144" i_stop="56166" i_length="979">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56165" g_stop="56142" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="382" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56141" i_stop="54379" i_length="1763">
            <donor d_prob="0.817" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54378" g_stop="54041" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="720" r_length="338" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E699018" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57502" e_stop="57145"/>
          <exon e_start="56165" e_stop="56142"/>
          <exon e_start="54378" e_stop="54041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGCTTGTTTCATGAATGTGTTAACGTGAATTGAACTATTCCCCAATCATTCTGCTTGTTGTTATATGTCGTTTGGGATTATTTGGAGGAAGGGCGGGAGTCAGGATGTGTGGGTTAGAAAATTTGCTATCAACTTTGAATAATGTCTAAAAATACTATTTGCTTTTCCTCCTTATGAGTTATGAAACCTGTTGTCTTGAAGTCGTGGCTGATATGGTTAATTAGTTTGGTGACCTTCACATGTTTCTTGTGAGTTTGAGATATATTAAATTCTTCTGGTTTTCCTTTTCGTAATATAGTAAATCTTGAACAATTTGGAACTCACCTATCTTAAAACTGGGAGTTTTTAGTGATAGCTTTTGGTCTTTGTCCTTTGAATGGACCATAGTGGAGCCATGGAAGATTTCTCTTGCTTACTTGCCATGCTTGTTCAGCAGAATTGACATTTCCTATGATCTGGACACCATGTCTTTTTCTTAGGGTTGTTTAGAGTATCTGGTTACGTGAGGATATTGGTTTGTCGAGTATTGCTCCCATTGACTTCTTATTTTTGTATGTCTTGCAGGTTTGAGCAATGTTTCTTTGACAGGTTAGTGTCATGAGATCTTTGGCAGTTCTTTAGTTTTCTTTGATTATGGTATCATTTATTTTTTGATCCGATGGAAGATTTCATCAAGTCATCATTTTCTTCTTCTAGCTTTTATCATTTACCTTTCTTAACATTGAGATCATCAACACTTTGTATTCTACGTTTTCATGAACTTTATTATCATAGGAATATGTTTGGGTTCGTATTTCGACTTTGAGCTTGAGGGGTTTTTAACCATTCTAGGTTGGTGTTGTCAAATGCTCTCTCCCTCTAAGTTATGTCAGAGATTTTCCGTTGGACTCCATATTTACCTTAATGTAAATAGGCCTGCAGATGAAATATTAGTAAGGGCTTCTAATATGATTTGTGTTTTTTTATAAGGAAAAAAAAAACGAACCCGTATTTTCTCTTGAATAACCTGCTTATGTACTGATCGAACCCTTATATTTTCTTGAATAACCTGCTTTCTTCTGTTATGACTCTCAGAATGATACCTTGATTGGAAGCTATTACGTGACACATGAAAATATTAGCTTTGGCAACTTAACACCTGAGGTGATATAACCCTTGGATTTCCCTTGTATGACACCTGCCTTCGTCAAGGACATTGTTTTGGACTTTTGATGGATCCCCTGATTGCCACAACTACATTTAACATGAAAAAGGCAGTAGCTTGATACTCCCTTTGTCCAACAATAGTTGTCCACTATTGACTTGCCACACCTTAAAAAACAATAAATAATAGGGGTAATATTACTATATTATCATTTGAATTTATTAAATTTTATGCTTTGAGAAATGTGTAGATGATAAATAGTATTTAATAGCAAGTTTAAAATAGACACAAAAAGGTAAATTATTTCTTGGTTTTCCAAAAGGACAAGTATTGTTGGACAACTATTTTTAGTAGAGTGGACAACTATTGTTGGACAGAGGAGCATAGAAGCTACTTACAACAACTTAATGGATCCAAAAATTCGGACAAGTATTTCTACGAAATTCTATGAGCATTTCCACTGGTAGCCTGATAACAACTTCGAAGAATTTCTGGACATGCCTTCCTCGTCCCCCTCTCTATCTTTTATCAGTTTCTCTCCTCAATATGGATTCATTTTGGCTACTAAAACAACAATAGCATACTTTTTCTGCAGAAGATTACCAGCTCTTTTTTTTTGTCGAAGTGGAAGGATCGCAGCATAGTTGTGATTAATTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCAATGTTTTGCAGATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAG</genome_strand>
        <mrna_strand>CCGTTTTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGCAATGTTTCTTTGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCTAAGCGTGATCCAGAAGTTGGCGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAATCTCAGGGGAATGTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730402" ref_strand="+" ref_description="SGN-E730402 [LA24AB02]">
      <seq>cactttaaaagcggagaaaaaaaaaaacagctgatctttcttccacactctcattcatctgctattggtctccataagtaagcacaaaactaacaatttaactcaaaattgttttttccaacttctccgtttactggccagtaaaaaaagcaaacaaaacgaccaatggcgttgaatcaagcaggaaaatcatcaccatgtagtcctagggtgttgaaatctgtattgggtctaatggcaattagtttggcagcctatattttgggtcctcctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgtaattgtgactgcaattcggaacccttcttttttattcccccaggtttgagcaatgtttctttgacaaattgtgctaagcgtgatccaaaagttggtgaaaacacggaaaaaaactttgctgatttgttgtctgaggaacttaaactgcgaaaagctgaagcctcaaaaaatcagcggaaggctgacatggcacttcttgaagcaaaaaagttgacatcccaatatatgaaagaagcagacaaatgcaattctggaatggagacatgtgaagaggcaagggaaaaagctgaggttcttttattggcacaaaagaaaatgactgctacatgggaaatgagggcgcgtcaaaaaggatggaaaaaaggggcagccaagtctcaaactcagtctcagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57831" stop="53752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57531" g_stop="57145" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57144" i_stop="56166" i_length="979">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56165" g_stop="56142" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="412" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56141" i_stop="54379" i_length="1763">
            <donor d_prob="0.817" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54378" g_stop="54052" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="739" r_length="327" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E730402" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57531" e_stop="57145"/>
          <exon e_start="56165" e_stop="56142"/>
          <exon e_start="54378" e_stop="54052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGAAAAGCGGAGAAAAAAA-AAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGCTTGTTTCATGAATGTGTTAACGTGAATTGAACTATTCCCCAATCATTCTGCTTGTTGTTATATGTCGTTTGGGATTATTTGGAGGAAGGGCGGGAGTCAGGATGTGTGGGTTAGAAAATTTGCTATCAACTTTGAATAATGTCTAAAAATACTATTTGCTTTTCCTCCTTATGAGTTATGAAACCTGTTGTCTTGAAGTCGTGGCTGATATGGTTAATTAGTTTGGTGACCTTCACATGTTTCTTGTGAGTTTGAGATATATTAAATTCTTCTGGTTTTCCTTTTCGTAATATAGTAAATCTTGAACAATTTGGAACTCACCTATCTTAAAACTGGGAGTTTTTAGTGATAGCTTTTGGTCTTTGTCCTTTGAATGGACCATAGTGGAGCCATGGAAGATTTCTCTTGCTTACTTGCCATGCTTGTTCAGCAGAATTGACATTTCCTATGATCTGGACACCATGTCTTTTTCTTAGGGTTGTTTAGAGTATCTGGTTACGTGAGGATATTGGTTTGTCGAGTATTGCTCCCATTGACTTCTTATTTTTGTATGTCTTGCAGGTTTGAGCAATGTTTCTTTGACAGGTTAGTGTCATGAGATCTTTGGCAGTTCTTTAGTTTTCTTTGATTATGGTATCATTTATTTTTTGATCCGATGGAAGATTTCATCAAGTCATCATTTTCTTCTTCTAGCTTTTATCATTTACCTTTCTTAACATTGAGATCATCAACACTTTGTATTCTACGTTTTCATGAACTTTATTATCATAGGAATATGTTTGGGTTCGTATTTCGACTTTGAGCTTGAGGGGTTTTTAACCATTCTAGGTTGGTGTTGTCAAATGCTCTCTCCCTCTAAGTTATGTCAGAGATTTTCCGTTGGACTCCATATTTACCTTAATGTAAATAGGCCTGCAGATGAAATATTAGTAAGGGCTTCTAATATGATTTGTGTTTTTTTATAAGGAAAAAAAAAACGAACCCGTATTTTCTCTTGAATAACCTGCTTATGTACTGATCGAACCCTTATATTTTCTTGAATAACCTGCTTTCTTCTGTTATGACTCTCAGAATGATACCTTGATTGGAAGCTATTACGTGACACATGAAAATATTAGCTTTGGCAACTTAACACCTGAGGTGATATAACCCTTGGATTTCCCTTGTATGACACCTGCCTTCGTCAAGGACATTGTTTTGGACTTTTGATGGATCCCCTGATTGCCACAACTACATTTAACATGAAAAAGGCAGTAGCTTGATACTCCCTTTGTCCAACAATAGTTGTCCACTATTGACTTGCCACACCTTAAAAAACAATAAATAATAGGGGTAATATTACTATATTATCATTTGAATTTATTAAATTTTATGCTTTGAGAAATGTGTAGATGATAAATAGTATTTAATAGCAAGTTTAAAATAGACACAAAAAGGTAAATTATTTCTTGGTTTTCCAAAAGGACAAGTATTGTTGGACAACTATTTTTAGTAGAGTGGACAACTATTGTTGGACAGAGGAGCATAGAAGCTACTTACAACAACTTAATGGATCCAAAAATTCGGACAAGTATTTCTACGAAATTCTATGAGCATTTCCACTGGTAGCCTGATAACAACTTCGAAGAATTTCTGGACATGCCTTCCTCGTCCCCCTCTCTATCTTTTATCAGTTTCTCTCCTCAATATGGATTCATTTTGGCTACTAAAACAACAATAGCATACTTTTTCTGCAGAAGATTACCAGCTCTTTTTTTTTGTCGAAGTGGAAGGATCGCAGCATAGTTGTGATTAATTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCAATGTTTTGCAGATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGG</genome_strand>
        <mrna_strand>CACTTTAAAAGCGGAGAAAAAAAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAAAAAAAGCAAACAAAACGACCAATGGCGTTGAATCAAGCAGGAAAATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGCAATGTTTCTTTGACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCTAAGCGTGATCCAAAAGTTGGTGAAAACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAAAAGCTGAAGCCTCAAAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAAATGAGGGCGCGTCAAAAAGGATGGAAAAAAGGGGCAGCCAAGTCTCAAACTCAGTCTCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718623" ref_strand="+" ref_description="SGN-E718623 [FC05AH07]">
      <seq>gggcgattggcggccaatcggccgaattggtcggcggatctggcctaaattcccaaacgcgtcacagcagttgaaaagcggagaaaaaaaaaacagctgatctttcttccacactctcattcatctgctattggtctccataagtaagcacaaaactaacaatttaactcaaaattgttttttccaacttctccgtttactggccagtaaaaaaagcaaacaaaacgaccaatggcgttgaatcaagcaggaaaatcatcaccatgtagtcctagggtgttgaaatctgtattgggtctaagggcaattagtttggcagcctatattttgggtcctcctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgaaattgtgactgcaattcgaaacccttcttttttattcccccaggtttgagcaatgtttctttgacaaattgtgctaagcgtgatccaaaagttggtgaaaacacggaaaaaaactttgctgatttgttgtctgaggaacttaaactgcgaaaagctgaagcctcaaaaaatcagcgaaaggctgacatggcacttcttgaagcaaaaaagttgacatcccaatatatgaaagaagcaaacaaatgcaattctggaatggaaacatgtgaaaaggcaagggaaaaagctgaggttcttttattggcacaaaagaaaatgactgctacatgggagatgagggcgcgtcaaaaaggatggaaaaaaggggcagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57869" stop="53773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57571" g_stop="57145" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="454" r_length="426" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57144" i_stop="56166" i_length="979">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56165" g_stop="56142" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="478" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56141" i_stop="54379" i_length="1763">
            <donor d_prob="0.817" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54378" g_stop="54073" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="784" r_length="306" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E718623" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57571" e_stop="57145"/>
          <exon e_start="56165" e_stop="56142"/>
          <exon e_start="54378" e_stop="54073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTCGGCGGATCTGGGCTAAATTCCCAAACGCGTCACAGCAGTTGAAAAGCGGAGAAAAAAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGCTTGTTTCATGAATGTGTTAACGTGAATTGAACTATTCCCCAATCATTCTGCTTGTTGTTATATGTCGTTTGGGATTATTTGGAGGAAGGGCGGGAGTCAGGATGTGTGGGTTAGAAAATTTGCTATCAACTTTGAATAATGTCTAAAAATACTATTTGCTTTTCCTCCTTATGAGTTATGAAACCTGTTGTCTTGAAGTCGTGGCTGATATGGTTAATTAGTTTGGTGACCTTCACATGTTTCTTGTGAGTTTGAGATATATTAAATTCTTCTGGTTTTCCTTTTCGTAATATAGTAAATCTTGAACAATTTGGAACTCACCTATCTTAAAACTGGGAGTTTTTAGTGATAGCTTTTGGTCTTTGTCCTTTGAATGGACCATAGTGGAGCCATGGAAGATTTCTCTTGCTTACTTGCCATGCTTGTTCAGCAGAATTGACATTTCCTATGATCTGGACACCATGTCTTTTTCTTAGGGTTGTTTAGAGTATCTGGTTACGTGAGGATATTGGTTTGTCGAGTATTGCTCCCATTGACTTCTTATTTTTGTATGTCTTGCAGGTTTGAGCAATGTTTCTTTGACAGGTTAGTGTCATGAGATCTTTGGCAGTTCTTTAGTTTTCTTTGATTATGGTATCATTTATTTTTTGATCCGATGGAAGATTTCATCAAGTCATCATTTTCTTCTTCTAGCTTTTATCATTTACCTTTCTTAACATTGAGATCATCAACACTTTGTATTCTACGTTTTCATGAACTTTATTATCATAGGAATATGTTTGGGTTCGTATTTCGACTTTGAGCTTGAGGGGTTTTTAACCATTCTAGGTTGGTGTTGTCAAATGCTCTCTCCCTCTAAGTTATGTCAGAGATTTTCCGTTGGACTCCATATTTACCTTAATGTAAATAGGCCTGCAGATGAAATATTAGTAAGGGCTTCTAATATGATTTGTGTTTTTTTATAAGGAAAAAAAAAACGAACCCGTATTTTCTCTTGAATAACCTGCTTATGTACTGATCGAACCCTTATATTTTCTTGAATAACCTGCTTTCTTCTGTTATGACTCTCAGAATGATACCTTGATTGGAAGCTATTACGTGACACATGAAAATATTAGCTTTGGCAACTTAACACCTGAGGTGATATAACCCTTGGATTTCCCTTGTATGACACCTGCCTTCGTCAAGGACATTGTTTTGGACTTTTGATGGATCCCCTGATTGCCACAACTACATTTAACATGAAAAAGGCAGTAGCTTGATACTCCCTTTGTCCAACAATAGTTGTCCACTATTGACTTGCCACACCTTAAAAAACAATAAATAATAGGGGTAATATTACTATATTATCATTTGAATTTATTAAATTTTATGCTTTGAGAAATGTGTAGATGATAAATAGTATTTAATAGCAAGTTTAAAATAGACACAAAAAGGTAAATTATTTCTTGGTTTTCCAAAAGGACAAGTATTGTTGGACAACTATTTTTAGTAGAGTGGACAACTATTGTTGGACAGAGGAGCATAGAAGCTACTTACAACAACTTAATGGATCCAAAAATTCGGACAAGTATTTCTACGAAATTCTATGAGCATTTCCACTGGTAGCCTGATAACAACTTCGAAGAATTTCTGGACATGCCTTCCTCGTCCCCCTCTCTATCTTTTATCAGTTTCTCTCCTCAATATGGATTCATTTTGGCTACTAAAACAACAATAGCATACTTTTTCTGCAGAAGATTACCAGCTCTTTTTTTTTGTCGAAGTGGAAGGATCGCAGCATAGTTGTGATTAATTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCAATGTTTTGCAGATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCA</genome_strand>
        <mrna_strand>G-GTCGGCGGATCTGGCCTAAATTCCCAAACGCGTCACAGCAGTTGAAAAGCGGAGAAAAAAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAAAAAAAGCAAACAAAACGACCAATGGCGTTGAATCAAGCAGGAAAATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAAGGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGAAATTGTGACTGCAATTCGAAACCCTTCTTTTTTATTCCCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGCAATGTTTCTTTGACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCTAAGCGTGATCCAAAAGTTGGTGAAAACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAAAAGCTGAAGCCTCAAAAAATCAGCGAAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAAACAAATGCAATTCTGGAATGGAAACATGTGAAAAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAAAAGGGGCAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268632" ref_strand="+" ref_description="SGN-E268632 [cLEI-13-P14]">
      <seq>tcttccacactctcattcatctgctattggtctccataagtaagcacaaaactaacaatttaactcaaaattgttttttccaacttctccgtttactggccagtagaaaaagcaaacagaacgaccaatggcgttgaatcaagcaggaagatcatcaccatgtagtcctagggtgttgaaatctgtattgggtctaatggcaattagtttggcagcctatattttgggtcctcctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgtaattgtgactgcaattcggaacccttcttttttattcccccaggtttgagcaatgtttctttgacagattgtgctaagcgtgatccagaagttggtgaagacacggaaaaaaactttgctgatttgttgtctgaggaacttaaactgcgagaagctgaagcctcagaaaatcagcggaaggctgacatggcacttcttgaagcaaaaaagttgacatcccaatatatgaaagaagcagacaaatgcaattctggaatggagacatgtgaagaggcaagggaaaaagctgaggttcttttattggcacaaaagaaaatgactgctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57794" stop="53819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57494" g_stop="57145" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57144" i_stop="56166" i_length="979">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56165" g_stop="56142" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="374" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56141" i_stop="54379" i_length="1763">
            <donor d_prob="0.817" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54378" g_stop="54119" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="634" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E268632" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57494" e_stop="57145"/>
          <exon e_start="56165" e_stop="56142"/>
          <exon e_start="54378" e_stop="54119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGCTTGTTTCATGAATGTGTTAACGTGAATTGAACTATTCCCCAATCATTCTGCTTGTTGTTATATGTCGTTTGGGATTATTTGGAGGAAGGGCGGGAGTCAGGATGTGTGGGTTAGAAAATTTGCTATCAACTTTGAATAATGTCTAAAAATACTATTTGCTTTTCCTCCTTATGAGTTATGAAACCTGTTGTCTTGAAGTCGTGGCTGATATGGTTAATTAGTTTGGTGACCTTCACATGTTTCTTGTGAGTTTGAGATATATTAAATTCTTCTGGTTTTCCTTTTCGTAATATAGTAAATCTTGAACAATTTGGAACTCACCTATCTTAAAACTGGGAGTTTTTAGTGATAGCTTTTGGTCTTTGTCCTTTGAATGGACCATAGTGGAGCCATGGAAGATTTCTCTTGCTTACTTGCCATGCTTGTTCAGCAGAATTGACATTTCCTATGATCTGGACACCATGTCTTTTTCTTAGGGTTGTTTAGAGTATCTGGTTACGTGAGGATATTGGTTTGTCGAGTATTGCTCCCATTGACTTCTTATTTTTGTATGTCTTGCAGGTTTGAGCAATGTTTCTTTGACAGGTTAGTGTCATGAGATCTTTGGCAGTTCTTTAGTTTTCTTTGATTATGGTATCATTTATTTTTTGATCCGATGGAAGATTTCATCAAGTCATCATTTTCTTCTTCTAGCTTTTATCATTTACCTTTCTTAACATTGAGATCATCAACACTTTGTATTCTACGTTTTCATGAACTTTATTATCATAGGAATATGTTTGGGTTCGTATTTCGACTTTGAGCTTGAGGGGTTTTTAACCATTCTAGGTTGGTGTTGTCAAATGCTCTCTCCCTCTAAGTTATGTCAGAGATTTTCCGTTGGACTCCATATTTACCTTAATGTAAATAGGCCTGCAGATGAAATATTAGTAAGGGCTTCTAATATGATTTGTGTTTTTTTATAAGGAAAAAAAAAACGAACCCGTATTTTCTCTTGAATAACCTGCTTATGTACTGATCGAACCCTTATATTTTCTTGAATAACCTGCTTTCTTCTGTTATGACTCTCAGAATGATACCTTGATTGGAAGCTATTACGTGACACATGAAAATATTAGCTTTGGCAACTTAACACCTGAGGTGATATAACCCTTGGATTTCCCTTGTATGACACCTGCCTTCGTCAAGGACATTGTTTTGGACTTTTGATGGATCCCCTGATTGCCACAACTACATTTAACATGAAAAAGGCAGTAGCTTGATACTCCCTTTGTCCAACAATAGTTGTCCACTATTGACTTGCCACACCTTAAAAAACAATAAATAATAGGGGTAATATTACTATATTATCATTTGAATTTATTAAATTTTATGCTTTGAGAAATGTGTAGATGATAAATAGTATTTAATAGCAAGTTTAAAATAGACACAAAAAGGTAAATTATTTCTTGGTTTTCCAAAAGGACAAGTATTGTTGGACAACTATTTTTAGTAGAGTGGACAACTATTGTTGGACAGAGGAGCATAGAAGCTACTTACAACAACTTAATGGATCCAAAAATTCGGACAAGTATTTCTACGAAATTCTATGAGCATTTCCACTGGTAGCCTGATAACAACTTCGAAGAATTTCTGGACATGCCTTCCTCGTCCCCCTCTCTATCTTTTATCAGTTTCTCTCCTCAATATGGATTCATTTTGGCTACTAAAACAACAATAGCATACTTTTTCTGCAGAAGATTACCAGCTCTTTTTTTTTGTCGAAGTGGAAGGATCGCAGCATAGTTGTGATTAATTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCAATGTTTTGCAGATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACA</genome_strand>
        <mrna_strand>TCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGCAATGTTTCTTTGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341782" ref_strand="+" ref_description="SGN-E341782 [cTOF-9-A16]">
      <seq>gagggccggagaaaaaaaaaaaagctgatctttcttccacaccctcactcatctgccattggtctccacaagtaagcacaaaactaacaatttaactcaaaattgttttttccaaccttctccgtttacctggccagtagaaaaagcaaacagaacgaccaatggcgttgaatcaagcaggaagactcatcaccatgtagtcctagggtgttgaaatctgtattgggtctaatggcaattagtttggcagcctatattttgggtcctcctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgtaattgtgactgcaattcggaacccttcttttttattcccccaggtttgagcaatgtttctttgacagattgtgctaagcgtgatccagaagttggtgaagacacggaaaaaaactttgctgatttgttgtctgaggaacttaaactgcgagaagctgaagcctcagaaaatcagcggaaggctgacatggcacttcttgaagcaaaaaagttgacatcccaatatatgaaagaagcagacaaatgcaattctggaatggagacatgtgaagaggcaagggaaaagcctgaggttcttttattggcacaaaagaaaatgactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57820" stop="53823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57526" g_stop="57145" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57144" i_stop="56166" i_length="979">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56165" g_stop="56142" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="409" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56141" i_stop="54379" i_length="1763">
            <donor d_prob="0.817" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54378" g_stop="54123" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="665" r_length="256" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E341782" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57526" e_stop="57145"/>
          <exon e_start="56165" e_stop="56142"/>
          <exon e_start="54378" e_stop="54123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCGGAGAAAAAAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAA-CTTCTCCGTTTA-CTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGA-TCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGCTTGTTTCATGAATGTGTTAACGTGAATTGAACTATTCCCCAATCATTCTGCTTGTTGTTATATGTCGTTTGGGATTATTTGGAGGAAGGGCGGGAGTCAGGATGTGTGGGTTAGAAAATTTGCTATCAACTTTGAATAATGTCTAAAAATACTATTTGCTTTTCCTCCTTATGAGTTATGAAACCTGTTGTCTTGAAGTCGTGGCTGATATGGTTAATTAGTTTGGTGACCTTCACATGTTTCTTGTGAGTTTGAGATATATTAAATTCTTCTGGTTTTCCTTTTCGTAATATAGTAAATCTTGAACAATTTGGAACTCACCTATCTTAAAACTGGGAGTTTTTAGTGATAGCTTTTGGTCTTTGTCCTTTGAATGGACCATAGTGGAGCCATGGAAGATTTCTCTTGCTTACTTGCCATGCTTGTTCAGCAGAATTGACATTTCCTATGATCTGGACACCATGTCTTTTTCTTAGGGTTGTTTAGAGTATCTGGTTACGTGAGGATATTGGTTTGTCGAGTATTGCTCCCATTGACTTCTTATTTTTGTATGTCTTGCAGGTTTGAGCAATGTTTCTTTGACAGGTTAGTGTCATGAGATCTTTGGCAGTTCTTTAGTTTTCTTTGATTATGGTATCATTTATTTTTTGATCCGATGGAAGATTTCATCAAGTCATCATTTTCTTCTTCTAGCTTTTATCATTTACCTTTCTTAACATTGAGATCATCAACACTTTGTATTCTACGTTTTCATGAACTTTATTATCATAGGAATATGTTTGGGTTCGTATTTCGACTTTGAGCTTGAGGGGTTTTTAACCATTCTAGGTTGGTGTTGTCAAATGCTCTCTCCCTCTAAGTTATGTCAGAGATTTTCCGTTGGACTCCATATTTACCTTAATGTAAATAGGCCTGCAGATGAAATATTAGTAAGGGCTTCTAATATGATTTGTGTTTTTTTATAAGGAAAAAAAAAACGAACCCGTATTTTCTCTTGAATAACCTGCTTATGTACTGATCGAACCCTTATATTTTCTTGAATAACCTGCTTTCTTCTGTTATGACTCTCAGAATGATACCTTGATTGGAAGCTATTACGTGACACATGAAAATATTAGCTTTGGCAACTTAACACCTGAGGTGATATAACCCTTGGATTTCCCTTGTATGACACCTGCCTTCGTCAAGGACATTGTTTTGGACTTTTGATGGATCCCCTGATTGCCACAACTACATTTAACATGAAAAAGGCAGTAGCTTGATACTCCCTTTGTCCAACAATAGTTGTCCACTATTGACTTGCCACACCTTAAAAAACAATAAATAATAGGGGTAATATTACTATATTATCATTTGAATTTATTAAATTTTATGCTTTGAGAAATGTGTAGATGATAAATAGTATTTAATAGCAAGTTTAAAATAGACACAAAAAGGTAAATTATTTCTTGGTTTTCCAAAAGGACAAGTATTGTTGGACAACTATTTTTAGTAGAGTGGACAACTATTGTTGGACAGAGGAGCATAGAAGCTACTTACAACAACTTAATGGATCCAAAAATTCGGACAAGTATTTCTACGAAATTCTATGAGCATTTCCACTGGTAGCCTGATAACAACTTCGAAGAATTTCTGGACATGCCTTCCTCGTCCCCCTCTCTATCTTTTATCAGTTTCTCTCCTCAATATGGATTCATTTTGGCTACTAAAACAACAATAGCATACTTTTTCTGCAGAAGATTACCAGCTCTTTTTTTTTGTCGAAGTGGAAGGATCGCAGCATAGTTGTGATTAATTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCAATGTTTTGCAGATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGC</genome_strand>
        <mrna_strand>GAGGGCCGGAGAAAAAAAAAAAAGCTGATCTTTCTTCCACACCCTCACTCATCTGCCATTGGTCTCCACAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACCTTCTCCGTTTACCTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGACTCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGCAATGTTTCTTTGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAGCCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311091" ref_strand="+" ref_description="SGN-E311091 [cLEZ-16-A10]">
      <seq>ttctccgtttactggccagtagaaaaagcaaacagaacgaccaatggcgttgaatcaagcaggaagatcatcaccatgtagtcctagggtgttgaaatctgtattgggtctaatggcaattagtttggcagcctatattttgggtcctcctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgtaattgtgactgcaattcggaacccttcttttttattcccccaggtttgagcaatgtttctttgacagattgtgctaagcgtgatccagaagttggtgaagacacggaaaaaaactttgctgatttgttgtctgaggaacttaaactgcgagaagctgaagcctcagaaaatcagcggaaggctgacatggcacttcttgaagcaaaaaagttgacatcccaatatatgaaagaagcagacaaatgcaattctggaatggagacatgtgaagaggcaagggaaaaagctgaggttcttttattggcacaaaagaaaatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57710" stop="53825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57410" g_stop="57145" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57144" i_stop="56166" i_length="979">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56165" g_stop="56142" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="290" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56141" i_stop="54379" i_length="1763">
            <donor d_prob="0.817" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54378" g_stop="54125" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="544" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E311091" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57410" e_stop="57145"/>
          <exon e_start="56165" e_stop="56142"/>
          <exon e_start="54378" e_stop="54125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGCTTGTTTCATGAATGTGTTAACGTGAATTGAACTATTCCCCAATCATTCTGCTTGTTGTTATATGTCGTTTGGGATTATTTGGAGGAAGGGCGGGAGTCAGGATGTGTGGGTTAGAAAATTTGCTATCAACTTTGAATAATGTCTAAAAATACTATTTGCTTTTCCTCCTTATGAGTTATGAAACCTGTTGTCTTGAAGTCGTGGCTGATATGGTTAATTAGTTTGGTGACCTTCACATGTTTCTTGTGAGTTTGAGATATATTAAATTCTTCTGGTTTTCCTTTTCGTAATATAGTAAATCTTGAACAATTTGGAACTCACCTATCTTAAAACTGGGAGTTTTTAGTGATAGCTTTTGGTCTTTGTCCTTTGAATGGACCATAGTGGAGCCATGGAAGATTTCTCTTGCTTACTTGCCATGCTTGTTCAGCAGAATTGACATTTCCTATGATCTGGACACCATGTCTTTTTCTTAGGGTTGTTTAGAGTATCTGGTTACGTGAGGATATTGGTTTGTCGAGTATTGCTCCCATTGACTTCTTATTTTTGTATGTCTTGCAGGTTTGAGCAATGTTTCTTTGACAGGTTAGTGTCATGAGATCTTTGGCAGTTCTTTAGTTTTCTTTGATTATGGTATCATTTATTTTTTGATCCGATGGAAGATTTCATCAAGTCATCATTTTCTTCTTCTAGCTTTTATCATTTACCTTTCTTAACATTGAGATCATCAACACTTTGTATTCTACGTTTTCATGAACTTTATTATCATAGGAATATGTTTGGGTTCGTATTTCGACTTTGAGCTTGAGGGGTTTTTAACCATTCTAGGTTGGTGTTGTCAAATGCTCTCTCCCTCTAAGTTATGTCAGAGATTTTCCGTTGGACTCCATATTTACCTTAATGTAAATAGGCCTGCAGATGAAATATTAGTAAGGGCTTCTAATATGATTTGTGTTTTTTTATAAGGAAAAAAAAAACGAACCCGTATTTTCTCTTGAATAACCTGCTTATGTACTGATCGAACCCTTATATTTTCTTGAATAACCTGCTTTCTTCTGTTATGACTCTCAGAATGATACCTTGATTGGAAGCTATTACGTGACACATGAAAATATTAGCTTTGGCAACTTAACACCTGAGGTGATATAACCCTTGGATTTCCCTTGTATGACACCTGCCTTCGTCAAGGACATTGTTTTGGACTTTTGATGGATCCCCTGATTGCCACAACTACATTTAACATGAAAAAGGCAGTAGCTTGATACTCCCTTTGTCCAACAATAGTTGTCCACTATTGACTTGCCACACCTTAAAAAACAATAAATAATAGGGGTAATATTACTATATTATCATTTGAATTTATTAAATTTTATGCTTTGAGAAATGTGTAGATGATAAATAGTATTTAATAGCAAGTTTAAAATAGACACAAAAAGGTAAATTATTTCTTGGTTTTCCAAAAGGACAAGTATTGTTGGACAACTATTTTTAGTAGAGTGGACAACTATTGTTGGACAGAGGAGCATAGAAGCTACTTACAACAACTTAATGGATCCAAAAATTCGGACAAGTATTTCTACGAAATTCTATGAGCATTTCCACTGGTAGCCTGATAACAACTTCGAAGAATTTCTGGACATGCCTTCCTCGTCCCCCTCTCTATCTTTTATCAGTTTCTCTCCTCAATATGGATTCATTTTGGCTACTAAAACAACAATAGCATACTTTTTCTGCAGAAGATTACCAGCTCTTTTTTTTTGTCGAAGTGGAAGGATCGCAGCATAGTTGTGATTAATTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCAATGTTTTGCAGATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACT</genome_strand>
        <mrna_strand>TTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGCAATGTTTCTTTGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245009" ref_strand="+" ref_description="SGN-E245009 [cLEF-2-H8]">
      <seq>aaaattgttttttccaacttctccgtttactggccagtagaaaaagcaaacagaacgaccaatggcgttgaatcaagcaggaagatcatcaccatgtagtcctagggtgttgaaatctgtattgggtctaatggcaattagtttggcagcctatattttgggtcctcctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgtaattgtgactgcaattcggaacccttcttttttattcccccaggtttgagcaatgtttctttgacagattgtgctaagcgtgatccagaagttggtgaagacacggaaaaaaactttgctgatttgttgtctgaggaacttaaactgcgagaagctgaagcctcagaaaatcagcggaaggctgacatggcacttcttgaagcaaaaaagttgacatcccaatatatgaaagaagcagacaaatgcaattctggaatggagacatgtgaagaggcaagggaaaaagctgaggttcttttattggcacaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57728" stop="53832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57428" g_stop="57145" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57144" i_stop="56166" i_length="979">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56165" g_stop="56142" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="308" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56141" i_stop="54379" i_length="1763">
            <donor d_prob="0.817" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54378" g_stop="54132" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="555" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E245009" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57428" e_stop="57145"/>
          <exon e_start="56165" e_stop="56142"/>
          <exon e_start="54378" e_stop="54132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGCTTGTTTCATGAATGTGTTAACGTGAATTGAACTATTCCCCAATCATTCTGCTTGTTGTTATATGTCGTTTGGGATTATTTGGAGGAAGGGCGGGAGTCAGGATGTGTGGGTTAGAAAATTTGCTATCAACTTTGAATAATGTCTAAAAATACTATTTGCTTTTCCTCCTTATGAGTTATGAAACCTGTTGTCTTGAAGTCGTGGCTGATATGGTTAATTAGTTTGGTGACCTTCACATGTTTCTTGTGAGTTTGAGATATATTAAATTCTTCTGGTTTTCCTTTTCGTAATATAGTAAATCTTGAACAATTTGGAACTCACCTATCTTAAAACTGGGAGTTTTTAGTGATAGCTTTTGGTCTTTGTCCTTTGAATGGACCATAGTGGAGCCATGGAAGATTTCTCTTGCTTACTTGCCATGCTTGTTCAGCAGAATTGACATTTCCTATGATCTGGACACCATGTCTTTTTCTTAGGGTTGTTTAGAGTATCTGGTTACGTGAGGATATTGGTTTGTCGAGTATTGCTCCCATTGACTTCTTATTTTTGTATGTCTTGCAGGTTTGAGCAATGTTTCTTTGACAGGTTAGTGTCATGAGATCTTTGGCAGTTCTTTAGTTTTCTTTGATTATGGTATCATTTATTTTTTGATCCGATGGAAGATTTCATCAAGTCATCATTTTCTTCTTCTAGCTTTTATCATTTACCTTTCTTAACATTGAGATCATCAACACTTTGTATTCTACGTTTTCATGAACTTTATTATCATAGGAATATGTTTGGGTTCGTATTTCGACTTTGAGCTTGAGGGGTTTTTAACCATTCTAGGTTGGTGTTGTCAAATGCTCTCTCCCTCTAAGTTATGTCAGAGATTTTCCGTTGGACTCCATATTTACCTTAATGTAAATAGGCCTGCAGATGAAATATTAGTAAGGGCTTCTAATATGATTTGTGTTTTTTTATAAGGAAAAAAAAAACGAACCCGTATTTTCTCTTGAATAACCTGCTTATGTACTGATCGAACCCTTATATTTTCTTGAATAACCTGCTTTCTTCTGTTATGACTCTCAGAATGATACCTTGATTGGAAGCTATTACGTGACACATGAAAATATTAGCTTTGGCAACTTAACACCTGAGGTGATATAACCCTTGGATTTCCCTTGTATGACACCTGCCTTCGTCAAGGACATTGTTTTGGACTTTTGATGGATCCCCTGATTGCCACAACTACATTTAACATGAAAAAGGCAGTAGCTTGATACTCCCTTTGTCCAACAATAGTTGTCCACTATTGACTTGCCACACCTTAAAAAACAATAAATAATAGGGGTAATATTACTATATTATCATTTGAATTTATTAAATTTTATGCTTTGAGAAATGTGTAGATGATAAATAGTATTTAATAGCAAGTTTAAAATAGACACAAAAAGGTAAATTATTTCTTGGTTTTCCAAAAGGACAAGTATTGTTGGACAACTATTTTTAGTAGAGTGGACAACTATTGTTGGACAGAGGAGCATAGAAGCTACTTACAACAACTTAATGGATCCAAAAATTCGGACAAGTATTTCTACGAAATTCTATGAGCATTTCCACTGGTAGCCTGATAACAACTTCGAAGAATTTCTGGACATGCCTTCCTCGTCCCCCTCTCTATCTTTTATCAGTTTCTCTCCTCAATATGGATTCATTTTGGCTACTAAAACAACAATAGCATACTTTTTCTGCAGAAGATTACCAGCTCTTTTTTTTTGTCGAAGTGGAAGGATCGCAGCATAGTTGTGATTAATTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCAATGTTTTGCAGATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAA</genome_strand>
        <mrna_strand>AAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGCAATGTTTCTTTGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731380" ref_strand="+" ref_description="SGN-E731380 [LA26DG11]">
      <seq>atttgaaaagcggacaaacaaaaaagcggcggatcttactcccaccctcccattcagcggcaattgaactccataagaaaccacaaaattaacaatttacctcaaaattgttttttccaacttctccgtttactggccagtaaaaaaaccaaacagaaccaccaatggcgttaaatcaggcaggaaaatcatcaccatggaggccaagggggttgaaatctgtattgggtctaatggcaattagtttggcagcctatattttgggcccccctttgaattggcactggagggaaggtttaattgctgaaacccgttcttcttcggttactacttgccctccttgaaattgtgactgcaattcgaaacccttcttttttattcccccaggtttaagcaatgtttctttgacaaatggtgctaagcgtgatccaaaatttggtgaaaacacggaaaaaaactttgctgatttgttgtctgaggaacttaacctgcaaaaagctgaagcctcaaaaaatcaccggaaggctaacttggcacttcttgaagcaaaaaagttgacatcccaatatatgaaaaaatcagacaactgcaattctggaatggagacatgtaaaaaggcaaggaaaaaatctgaggttcttttattggcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57830" stop="53836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57530" g_stop="57145" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57144" i_stop="56166" i_length="979">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56165" g_stop="56142" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="411" r_length="24" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56141" i_stop="54379" i_length="1763">
            <donor d_prob="0.817" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54378" g_stop="54136" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="654" r_length="243" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E731380" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57530" e_stop="57145"/>
          <exon e_start="56165" e_stop="56142"/>
          <exon e_start="54378" e_stop="54136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGAAAAGCGGAGAAA-AAAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGCTTGTTTCATGAATGTGTTAACGTGAATTGAACTATTCCCCAATCATTCTGCTTGTTGTTATATGTCGTTTGGGATTATTTGGAGGAAGGGCGGGAGTCAGGATGTGTGGGTTAGAAAATTTGCTATCAACTTTGAATAATGTCTAAAAATACTATTTGCTTTTCCTCCTTATGAGTTATGAAACCTGTTGTCTTGAAGTCGTGGCTGATATGGTTAATTAGTTTGGTGACCTTCACATGTTTCTTGTGAGTTTGAGATATATTAAATTCTTCTGGTTTTCCTTTTCGTAATATAGTAAATCTTGAACAATTTGGAACTCACCTATCTTAAAACTGGGAGTTTTTAGTGATAGCTTTTGGTCTTTGTCCTTTGAATGGACCATAGTGGAGCCATGGAAGATTTCTCTTGCTTACTTGCCATGCTTGTTCAGCAGAATTGACATTTCCTATGATCTGGACACCATGTCTTTTTCTTAGGGTTGTTTAGAGTATCTGGTTACGTGAGGATATTGGTTTGTCGAGTATTGCTCCCATTGACTTCTTATTTTTGTATGTCTTGCAGGTTTGAGCAATGTTTCTTTGACAGGTTAGTGTCATGAGATCTTTGGCAGTTCTTTAGTTTTCTTTGATTATGGTATCATTTATTTTTTGATCCGATGGAAGATTTCATCAAGTCATCATTTTCTTCTTCTAGCTTTTATCATTTACCTTTCTTAACATTGAGATCATCAACACTTTGTATTCTACGTTTTCATGAACTTTATTATCATAGGAATATGTTTGGGTTCGTATTTCGACTTTGAGCTTGAGGGGTTTTTAACCATTCTAGGTTGGTGTTGTCAAATGCTCTCTCCCTCTAAGTTATGTCAGAGATTTTCCGTTGGACTCCATATTTACCTTAATGTAAATAGGCCTGCAGATGAAATATTAGTAAGGGCTTCTAATATGATTTGTGTTTTTTTATAAGGAAAAAAAAAACGAACCCGTATTTTCTCTTGAATAACCTGCTTATGTACTGATCGAACCCTTATATTTTCTTGAATAACCTGCTTTCTTCTGTTATGACTCTCAGAATGATACCTTGATTGGAAGCTATTACGTGACACATGAAAATATTAGCTTTGGCAACTTAACACCTGAGGTGATATAACCCTTGGATTTCCCTTGTATGACACCTGCCTTCGTCAAGGACATTGTTTTGGACTTTTGATGGATCCCCTGATTGCCACAACTACATTTAACATGAAAAAGGCAGTAGCTTGATACTCCCTTTGTCCAACAATAGTTGTCCACTATTGACTTGCCACACCTTAAAAAACAATAAATAATAGGGGTAATATTACTATATTATCATTTGAATTTATTAAATTTTATGCTTTGAGAAATGTGTAGATGATAAATAGTATTTAATAGCAAGTTTAAAATAGACACAAAAAGGTAAATTATTTCTTGGTTTTCCAAAAGGACAAGTATTGTTGGACAACTATTTTTAGTAGAGTGGACAACTATTGTTGGACAGAGGAGCATAGAAGCTACTTACAACAACTTAATGGATCCAAAAATTCGGACAAGTATTTCTACGAAATTCTATGAGCATTTCCACTGGTAGCCTGATAACAACTTCGAAGAATTTCTGGACATGCCTTCCTCGTCCCCCTCTCTATCTTTTATCAGTTTCTCTCCTCAATATGGATTCATTTTGGCTACTAAAACAACAATAGCATACTTTTTCTGCAGAAGATTACCAGCTCTTTTTTTTTGTCGAAGTGGAAGGATCGCAGCATAGTTGTGATTAATTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCAATGTTTTGCAGATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAA</genome_strand>
        <mrna_strand>ATTTGAAAAGCGGACAAACAAAAAAGCGGCGGATCTTACTCCCACCCTCCCATTCAGCGGCAATTGAACTCCATAAGAAACCACAAAATTAACAATTTACCTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAAAAAAACCAAACAGAACCACCAATGGCGTTAAATCAGGCAGGAAAATCATCACCATGGAGGCCAAGGGGGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGCCCCCCTTTGAATTGGCACTGGAGGGAAGGTTTAATTGCTGAAACCCGTTCTTCTTCGGTTACTACTTGCCCTCCTTGAAATTGTGACTGCAATTCGAAACCCTTCTTTTTTATTCCCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAAGCAATGTTTCTTTGACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGCTAAGCGTGATCCAAAATTTGGTGAAAACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAACCTGCAAAAAGCTGAAGCCTCAAAAAATCACCGGAAGGCTAACTTGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAAAATCAGACAACTGCAATTCTGGAATGGAGACATGTAAAAAGGCAAGGAAAAAATCTGAGGTTCTTTTATTGGCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331077" ref_strand="+" ref_description="SGN-E331077 [cTOD-6-I8]">
      <seq>aaaagcaaacagaacgaccaatggcgttgaatcaagcaggaagatcatcaccatgtagtcctagggtgttgaaatctgtattgggtctaatggcaattagtttggcagcctatattttgggtcctcctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgtaattgtgactgcaattcggaacccttcttttttattcccccaggtttgagcaatgtttctttgacagattgtgctaagcgtgatccagaagttggtgaagacacggaaaaaaactttgctgatttgttgtctgaggaacttaaactgcgagaagctgaagcctcagaaaatcagcggaaggctgacatggcacttcttgaagcaaaaaagttgacatcccaatatatgaaagaagcagacaaatgcaattctggaatggagacatgtgaagaggcaagggaaaaagctgaggttcttttattggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57687" stop="53840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57387" g_stop="57145" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57144" i_stop="56166" i_length="979">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56165" g_stop="56142" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="267" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56141" i_stop="54379" i_length="1763">
            <donor d_prob="0.817" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54378" g_stop="54140" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="506" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E331077" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57387" e_stop="57145"/>
          <exon e_start="56165" e_stop="56142"/>
          <exon e_start="54378" e_stop="54140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGCTTGTTTCATGAATGTGTTAACGTGAATTGAACTATTCCCCAATCATTCTGCTTGTTGTTATATGTCGTTTGGGATTATTTGGAGGAAGGGCGGGAGTCAGGATGTGTGGGTTAGAAAATTTGCTATCAACTTTGAATAATGTCTAAAAATACTATTTGCTTTTCCTCCTTATGAGTTATGAAACCTGTTGTCTTGAAGTCGTGGCTGATATGGTTAATTAGTTTGGTGACCTTCACATGTTTCTTGTGAGTTTGAGATATATTAAATTCTTCTGGTTTTCCTTTTCGTAATATAGTAAATCTTGAACAATTTGGAACTCACCTATCTTAAAACTGGGAGTTTTTAGTGATAGCTTTTGGTCTTTGTCCTTTGAATGGACCATAGTGGAGCCATGGAAGATTTCTCTTGCTTACTTGCCATGCTTGTTCAGCAGAATTGACATTTCCTATGATCTGGACACCATGTCTTTTTCTTAGGGTTGTTTAGAGTATCTGGTTACGTGAGGATATTGGTTTGTCGAGTATTGCTCCCATTGACTTCTTATTTTTGTATGTCTTGCAGGTTTGAGCAATGTTTCTTTGACAGGTTAGTGTCATGAGATCTTTGGCAGTTCTTTAGTTTTCTTTGATTATGGTATCATTTATTTTTTGATCCGATGGAAGATTTCATCAAGTCATCATTTTCTTCTTCTAGCTTTTATCATTTACCTTTCTTAACATTGAGATCATCAACACTTTGTATTCTACGTTTTCATGAACTTTATTATCATAGGAATATGTTTGGGTTCGTATTTCGACTTTGAGCTTGAGGGGTTTTTAACCATTCTAGGTTGGTGTTGTCAAATGCTCTCTCCCTCTAAGTTATGTCAGAGATTTTCCGTTGGACTCCATATTTACCTTAATGTAAATAGGCCTGCAGATGAAATATTAGTAAGGGCTTCTAATATGATTTGTGTTTTTTTATAAGGAAAAAAAAAACGAACCCGTATTTTCTCTTGAATAACCTGCTTATGTACTGATCGAACCCTTATATTTTCTTGAATAACCTGCTTTCTTCTGTTATGACTCTCAGAATGATACCTTGATTGGAAGCTATTACGTGACACATGAAAATATTAGCTTTGGCAACTTAACACCTGAGGTGATATAACCCTTGGATTTCCCTTGTATGACACCTGCCTTCGTCAAGGACATTGTTTTGGACTTTTGATGGATCCCCTGATTGCCACAACTACATTTAACATGAAAAAGGCAGTAGCTTGATACTCCCTTTGTCCAACAATAGTTGTCCACTATTGACTTGCCACACCTTAAAAAACAATAAATAATAGGGGTAATATTACTATATTATCATTTGAATTTATTAAATTTTATGCTTTGAGAAATGTGTAGATGATAAATAGTATTTAATAGCAAGTTTAAAATAGACACAAAAAGGTAAATTATTTCTTGGTTTTCCAAAAGGACAAGTATTGTTGGACAACTATTTTTAGTAGAGTGGACAACTATTGTTGGACAGAGGAGCATAGAAGCTACTTACAACAACTTAATGGATCCAAAAATTCGGACAAGTATTTCTACGAAATTCTATGAGCATTTCCACTGGTAGCCTGATAACAACTTCGAAGAATTTCTGGACATGCCTTCCTCGTCCCCCTCTCTATCTTTTATCAGTTTCTCTCCTCAATATGGATTCATTTTGGCTACTAAAACAACAATAGCATACTTTTTCTGCAGAAGATTACCAGCTCTTTTTTTTTGTCGAAGTGGAAGGATCGCAGCATAGTTGTGATTAATTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCAATGTTTTGCAGATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCA</genome_strand>
        <mrna_strand>AAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGCAATGTTTCTTTGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330537" ref_strand="+" ref_description="SGN-E330537 [cTOD-8-M11]">
      <seq>aaaagcaaacagaacgaccaatggcgttgaatcaagcaggaagatcatcaccatgtagtcctagggtgttgaaatctgtattgggtctaatggcaattagtttggcagcctatattttgggtcctcctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgtaattgtgactgcaattcggaacccttcttttttattcccccaggtttgagcaatgtttctttgacagattgtgctaagcgtgatccagaagttggtgaagacacggaaaaaaactttgctgatttgttgtctgaggaacttaaactgcgagaagctgaagcctcagaaaatcagcggaaggctgacatggcacttcttgaagcaaaaaagttgacatcccaatatatgaaagaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57687" stop="53910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57387" g_stop="57145" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57144" i_stop="56166" i_length="979">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56165" g_stop="56142" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="267" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56141" i_stop="54379" i_length="1763">
            <donor d_prob="0.817" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54378" g_stop="54210" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="436" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E330537" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57387" e_stop="57145"/>
          <exon e_start="56165" e_stop="56142"/>
          <exon e_start="54378" e_stop="54210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGCTTGTTTCATGAATGTGTTAACGTGAATTGAACTATTCCCCAATCATTCTGCTTGTTGTTATATGTCGTTTGGGATTATTTGGAGGAAGGGCGGGAGTCAGGATGTGTGGGTTAGAAAATTTGCTATCAACTTTGAATAATGTCTAAAAATACTATTTGCTTTTCCTCCTTATGAGTTATGAAACCTGTTGTCTTGAAGTCGTGGCTGATATGGTTAATTAGTTTGGTGACCTTCACATGTTTCTTGTGAGTTTGAGATATATTAAATTCTTCTGGTTTTCCTTTTCGTAATATAGTAAATCTTGAACAATTTGGAACTCACCTATCTTAAAACTGGGAGTTTTTAGTGATAGCTTTTGGTCTTTGTCCTTTGAATGGACCATAGTGGAGCCATGGAAGATTTCTCTTGCTTACTTGCCATGCTTGTTCAGCAGAATTGACATTTCCTATGATCTGGACACCATGTCTTTTTCTTAGGGTTGTTTAGAGTATCTGGTTACGTGAGGATATTGGTTTGTCGAGTATTGCTCCCATTGACTTCTTATTTTTGTATGTCTTGCAGGTTTGAGCAATGTTTCTTTGACAGGTTAGTGTCATGAGATCTTTGGCAGTTCTTTAGTTTTCTTTGATTATGGTATCATTTATTTTTTGATCCGATGGAAGATTTCATCAAGTCATCATTTTCTTCTTCTAGCTTTTATCATTTACCTTTCTTAACATTGAGATCATCAACACTTTGTATTCTACGTTTTCATGAACTTTATTATCATAGGAATATGTTTGGGTTCGTATTTCGACTTTGAGCTTGAGGGGTTTTTAACCATTCTAGGTTGGTGTTGTCAAATGCTCTCTCCCTCTAAGTTATGTCAGAGATTTTCCGTTGGACTCCATATTTACCTTAATGTAAATAGGCCTGCAGATGAAATATTAGTAAGGGCTTCTAATATGATTTGTGTTTTTTTATAAGGAAAAAAAAAACGAACCCGTATTTTCTCTTGAATAACCTGCTTATGTACTGATCGAACCCTTATATTTTCTTGAATAACCTGCTTTCTTCTGTTATGACTCTCAGAATGATACCTTGATTGGAAGCTATTACGTGACACATGAAAATATTAGCTTTGGCAACTTAACACCTGAGGTGATATAACCCTTGGATTTCCCTTGTATGACACCTGCCTTCGTCAAGGACATTGTTTTGGACTTTTGATGGATCCCCTGATTGCCACAACTACATTTAACATGAAAAAGGCAGTAGCTTGATACTCCCTTTGTCCAACAATAGTTGTCCACTATTGACTTGCCACACCTTAAAAAACAATAAATAATAGGGGTAATATTACTATATTATCATTTGAATTTATTAAATTTTATGCTTTGAGAAATGTGTAGATGATAAATAGTATTTAATAGCAAGTTTAAAATAGACACAAAAAGGTAAATTATTTCTTGGTTTTCCAAAAGGACAAGTATTGTTGGACAACTATTTTTAGTAGAGTGGACAACTATTGTTGGACAGAGGAGCATAGAAGCTACTTACAACAACTTAATGGATCCAAAAATTCGGACAAGTATTTCTACGAAATTCTATGAGCATTTCCACTGGTAGCCTGATAACAACTTCGAAGAATTTCTGGACATGCCTTCCTCGTCCCCCTCTCTATCTTTTATCAGTTTCTCTCCTCAATATGGATTCATTTTGGCTACTAAAACAACAATAGCATACTTTTTCTGCAGAAGATTACCAGCTCTTTTTTTTTGTCGAAGTGGAAGGATCGCAGCATAGTTGTGATTAATTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCAATGTTTTGCAGATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGC</genome_strand>
        <mrna_strand>AAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGCAATGTTTCTTTGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272217" ref_strand="+" ref_description="SGN-E272217 [cLEM-19-K9]">
      <seq>taaattcccaaacgcgtcacagcanttgaaaagcggagaaaaaaaaaacagctgatctttcttccacactctcattcatctgctattggtctccataagtaagcacaaaactaacaatttaactcaaaattgttttttccaacttctccgtttactggccagtagaaaaagcaaacagaacgaccaatggcgttgaatcaagcaggaagatcatcaccatgtagtcctagggtgttgaaatctgtattgggtctaatggcaattagtttggcagcctatattttgggtcctcctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgtaattgtgactgcaattcggaacccttcttttttattcccccaggtttgagcaatgtttctttgacagattgtgctaagcgtgatccagaagttggtgaagacacggaaaaaaactttgctgatttgttgtctgaggaacttaaactgcgagaagctgaagcctcagaaaatcagcggaaggctgacatggcacttcttgaagcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57853" stop="53938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57553" g_stop="57145" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57144" i_stop="56166" i_length="979">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56165" g_stop="56142" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="433" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56141" i_stop="54379" i_length="1763">
            <donor d_prob="0.817" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54378" g_stop="54238" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="574" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E272217" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57553" e_stop="57145"/>
          <exon e_start="56165" e_stop="56142"/>
          <exon e_start="54378" e_stop="54238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTCCCAAACGCGTCACAGCAGTTGAAAAGCGGAGAAAAAAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGCTTGTTTCATGAATGTGTTAACGTGAATTGAACTATTCCCCAATCATTCTGCTTGTTGTTATATGTCGTTTGGGATTATTTGGAGGAAGGGCGGGAGTCAGGATGTGTGGGTTAGAAAATTTGCTATCAACTTTGAATAATGTCTAAAAATACTATTTGCTTTTCCTCCTTATGAGTTATGAAACCTGTTGTCTTGAAGTCGTGGCTGATATGGTTAATTAGTTTGGTGACCTTCACATGTTTCTTGTGAGTTTGAGATATATTAAATTCTTCTGGTTTTCCTTTTCGTAATATAGTAAATCTTGAACAATTTGGAACTCACCTATCTTAAAACTGGGAGTTTTTAGTGATAGCTTTTGGTCTTTGTCCTTTGAATGGACCATAGTGGAGCCATGGAAGATTTCTCTTGCTTACTTGCCATGCTTGTTCAGCAGAATTGACATTTCCTATGATCTGGACACCATGTCTTTTTCTTAGGGTTGTTTAGAGTATCTGGTTACGTGAGGATATTGGTTTGTCGAGTATTGCTCCCATTGACTTCTTATTTTTGTATGTCTTGCAGGTTTGAGCAATGTTTCTTTGACAGGTTAGTGTCATGAGATCTTTGGCAGTTCTTTAGTTTTCTTTGATTATGGTATCATTTATTTTTTGATCCGATGGAAGATTTCATCAAGTCATCATTTTCTTCTTCTAGCTTTTATCATTTACCTTTCTTAACATTGAGATCATCAACACTTTGTATTCTACGTTTTCATGAACTTTATTATCATAGGAATATGTTTGGGTTCGTATTTCGACTTTGAGCTTGAGGGGTTTTTAACCATTCTAGGTTGGTGTTGTCAAATGCTCTCTCCCTCTAAGTTATGTCAGAGATTTTCCGTTGGACTCCATATTTACCTTAATGTAAATAGGCCTGCAGATGAAATATTAGTAAGGGCTTCTAATATGATTTGTGTTTTTTTATAAGGAAAAAAAAAACGAACCCGTATTTTCTCTTGAATAACCTGCTTATGTACTGATCGAACCCTTATATTTTCTTGAATAACCTGCTTTCTTCTGTTATGACTCTCAGAATGATACCTTGATTGGAAGCTATTACGTGACACATGAAAATATTAGCTTTGGCAACTTAACACCTGAGGTGATATAACCCTTGGATTTCCCTTGTATGACACCTGCCTTCGTCAAGGACATTGTTTTGGACTTTTGATGGATCCCCTGATTGCCACAACTACATTTAACATGAAAAAGGCAGTAGCTTGATACTCCCTTTGTCCAACAATAGTTGTCCACTATTGACTTGCCACACCTTAAAAAACAATAAATAATAGGGGTAATATTACTATATTATCATTTGAATTTATTAAATTTTATGCTTTGAGAAATGTGTAGATGATAAATAGTATTTAATAGCAAGTTTAAAATAGACACAAAAAGGTAAATTATTTCTTGGTTTTCCAAAAGGACAAGTATTGTTGGACAACTATTTTTAGTAGAGTGGACAACTATTGTTGGACAGAGGAGCATAGAAGCTACTTACAACAACTTAATGGATCCAAAAATTCGGACAAGTATTTCTACGAAATTCTATGAGCATTTCCACTGGTAGCCTGATAACAACTTCGAAGAATTTCTGGACATGCCTTCCTCGTCCCCCTCTCTATCTTTTATCAGTTTCTCTCCTCAATATGGATTCATTTTGGCTACTAAAACAACAATAGCATACTTTTTCTGCAGAAGATTACCAGCTCTTTTTTTTTGTCGAAGTGGAAGGATCGCAGCATAGTTGTGATTAATTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCAATGTTTTGCAGATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAA</genome_strand>
        <mrna_strand>TAAATTCCCAAACGCGTCACAGCANTTGAAAAGCGGAGAAAAAAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGAGCAATGTTTCTTTGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233604" ref_strand="+" ref_description="SGN-E233604 [cLED-14-E7]">
      <seq>ttactggccagtagaaaaagcaaacagaacgaccaatggcgttgaatcaagcaggaagatcatcaccatgtagtcctagggtgttgaaatctgtattgggtctaatggcaattagtttggcagcctatattttgggtcctcctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgtaattgtgactgcaattcggaacccttcttttttattcccccagattgtgctaagcgtgatccagaagttggtgaagacacggaaaaaactttgctgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57702" stop="54021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57402" g_stop="57145" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57144" i_stop="54379" i_length="2766">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54378" g_stop="54321" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="315" r_length="57" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E233604" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57402" e_stop="57145"/>
          <exon e_start="54378" e_stop="54321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGCTTGTTTCATGAATGTGTTAACGTGAATTGAACTATTCCCCAATCATTCTGCTTGTTGTTATATGTCGTTTGGGATTATTTGGAGGAAGGGCGGGAGTCAGGATGTGTGGGTTAGAAAATTTGCTATCAACTTTGAATAATGTCTAAAAATACTATTTGCTTTTCCTCCTTATGAGTTATGAAACCTGTTGTCTTGAAGTCGTGGCTGATATGGTTAATTAGTTTGGTGACCTTCACATGTTTCTTGTGAGTTTGAGATATATTAAATTCTTCTGGTTTTCCTTTTCGTAATATAGTAAATCTTGAACAATTTGGAACTCACCTATCTTAAAACTGGGAGTTTTTAGTGATAGCTTTTGGTCTTTGTCCTTTGAATGGACCATAGTGGAGCCATGGAAGATTTCTCTTGCTTACTTGCCATGCTTGTTCAGCAGAATTGACATTTCCTATGATCTGGACACCATGTCTTTTTCTTAGGGTTGTTTAGAGTATCTGGTTACGTGAGGATATTGGTTTGTCGAGTATTGCTCCCATTGACTTCTTATTTTTGTATGTCTTGCAGGTTTGAGCAATGTTTCTTTGACAGGTTAGTGTCATGAGATCTTTGGCAGTTCTTTAGTTTTCTTTGATTATGGTATCATTTATTTTTTGATCCGATGGAAGATTTCATCAAGTCATCATTTTCTTCTTCTAGCTTTTATCATTTACCTTTCTTAACATTGAGATCATCAACACTTTGTATTCTACGTTTTCATGAACTTTATTATCATAGGAATATGTTTGGGTTCGTATTTCGACTTTGAGCTTGAGGGGTTTTTAACCATTCTAGGTTGGTGTTGTCAAATGCTCTCTCCCTCTAAGTTATGTCAGAGATTTTCCGTTGGACTCCATATTTACCTTAATGTAAATAGGCCTGCAGATGAAATATTAGTAAGGGCTTCTAATATGATTTGTGTTTTTTTATAAGGAAAAAAAAAACGAACCCGTATTTTCTCTTGAATAACCTGCTTATGTACTGATCGAACCCTTATATTTTCTTGAATAACCTGCTTTCTTCTGTTATGACTCTCAGAATGATACCTTGATTGGAAGCTATTACGTGACACATGAAAATATTAGCTTTGGCAACTTAACACCTGAGGTGATATAACCCTTGGATTTCCCTTGTATGACACCTGCCTTCGTCAAGGACATTGTTTTGGACTTTTGATGGATCCCCTGATTGCCACAACTACATTTAACATGAAAAAGGCAGTAGCTTGATACTCCCTTTGTCCAACAATAGTTGTCCACTATTGACTTGCCACACCTTAAAAAACAATAAATAATAGGGGTAATATTACTATATTATCATTTGAATTTATTAAATTTTATGCTTTGAGAAATGTGTAGATGATAAATAGTATTTAATAGCAAGTTTAAAATAGACACAAAAAGGTAAATTATTTCTTGGTTTTCCAAAAGGACAAGTATTGTTGGACAACTATTTTTAGTAGAGTGGACAACTATTGTTGGACAGAGGAGCATAGAAGCTACTTACAACAACTTAATGGATCCAAAAATTCGGACAAGTATTTCTACGAAATTCTATGAGCATTTCCACTGGTAGCCTGATAACAACTTCGAAGAATTTCTGGACATGCCTTCCTCGTCCCCCTCTCTATCTTTTATCAGTTTCTCTCCTCAATATGGATTCATTTTGGCTACTAAAACAACAATAGCATACTTTTTCTGCAGAAGATTACCAGCTCTTTTTTTTTGTCGAAGTGGAAGGATCGCAGCATAGTTGTGATTAATTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCAATGTTTTGCAGATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTT</genome_strand>
        <mrna_strand>TTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGG-AAAAAACTTTGCTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214707" ref_strand="+" ref_description="SGN-E214707 [cLEC-79-N9]">
      <seq>tttagttgtgaaaattatctgaggagacgtgtaacatgtattattataaatctgagattttttggtttgaaatctgaaaatggacgaaaaaggaagagttcttatgagtttatctgatgcatctaatctctgttgtggtagagcatattgtatgacttcagatgagaccttttagtacttggtaggttaggaactactgttagtttaaataggacattttgcagaactttgttgttgtaaaaacatttatttagttgcatcccataaacgaccatctcaagtatgatggttgagttcgaggatggcatgatttctttgattctgtaatgagttgaaactgtgcaaatatttggatgatctgcaagactgcaaatgcttgacatcttaataagctgaatatgttcaaaatatcgtatagttaatgtgaacctcctatattttagttttgttgcgttgaagtagccatttactctttctttttatcattaaaatctatattttgtgacttgacatctaaaatcttggatttgccttcttattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="55231" stop="54090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54931" g_stop="54390" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E214707" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54931" e_stop="54390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCA</genome_strand>
        <mrna_strand>TTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739945" ref_strand="+" ref_description="SGN-E739945 [LC19BH01]">
      <seq>ctttcttccacactctcattcatctgctattggtctccataagtaagcacaaaactaacaatttaactcaaaattgttttttccaacttctccgtttactggccagtagaaaaagcaaacagaacgaccaatggcgttgaatcaagcaggaagatcatcaccatgtagtcctagggtgttgaaatctgtattgggtctaatggcaattagtttggcagcctatattttgggtcctcctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgtaattgtgactgcaattcggaacccttcttttttattcccccaggtatacattttccctgatctgctgtaatatgtgccattaactgtcaagaatggtctttttgtgcggatatggtaatttaaagaacccttttttatttgcttaaagacccatttgtgaatctggtggtttaattgaaagatcttaaaaaaaattgtacctttgttggttctggctttggatctgctttctaaaggaagcagaatccaattgattgtgctttatgtgatatgctgcgtatattgaatcataatcctgctaaaatgatacagtgatttgaaattgtaagtttatacttctaatttcaggctaaattgggaagtttacactgtttgaagttcaattattgcagattgttagttgttgttactactgttaatcatttttgttctttttatatttcaggcaatatttccatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57797" stop="56427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57497" g_stop="56727" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="771" r_length="771" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E739945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57497" e_stop="56727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGC</genome_strand>
        <mrna_strand>CTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367646" ref_strand="+" ref_description="SGN-E367646 [cLPT-14-K4]">
      <seq>ttgaaaagcggagaaaaaaaaaacagctgatctttcttccacactctcattcatctgctattggtctccataagtaagcacaaaactaacaatttaactcaaatttttttttcaacttctctgtttactggcccgtagagaaagcaaacagaaccaccaatggcgttgaatcaagcaggaagatcatcaacatgtactcctagggtgttgaaatcagtattgggtctaatggcaattagtttggcagcatatattttgggtccacctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgtaattgtgactgcaattccgaacccttcttttttattcccccaggtatacattttccctgatctgctgtaatatgtgccattaactgtcaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57828" stop="56793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57528" g_stop="57093" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E367646" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57528" e_stop="57093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAAGCGGAGAAAAAAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATG</genome_strand>
        <mrna_strand>TTGAAAAGCGGAGAAAAAAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTC-AAATT-TTTTTTTCAACTTCTCTGTTTACTGGCCCGTAGAGAAAGCAAACAGAACCACCAATGGCGTTGAATCAAGCAGGAAGATCATCAACATGTACTCCTAGGGTGTTGAAATCAGTATTGGGTCTAATGGCAATTAGTTTGGCAGCATATATTTTGGGTCCACCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCCGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365745" ref_strand="+" ref_description="SGN-E365745 [cLPT-8-F20]">
      <seq>ttgaaaagcggagaaaaaaaaaaacagctgatctttcttccacactctcattcatctgctattggtctccataagtaagcacaaaactaacaatttaactcaaatttttttttcaacttctctgtttactggccagtagagaaagcaaacagaaccaccaatggcgttgaatcaagcaggaagatcatcagcatgtagtcctagggtgttgaaatcagtattgggtctaatggcaattagtttggcagcatatattttgggtccacctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgtaattgtgactgcaattccgaacccttcttttttattcccccaggtatacattttccctgatctgctgtaatatgtgccatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57828" stop="56806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57528" g_stop="57106" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E365745" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57528" e_stop="57106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAAGCGGAGAAAA-AAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTA</genome_strand>
        <mrna_strand>TTGAAAAGCGGAGAAAAAAAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTC-AAATT-TTTTTTTCAACTTCTCTGTTTACTGGCCAGTAGAGAAAGCAAACAGAACCACCAATGGCGTTGAATCAAGCAGGAAGATCATCAGCATGTAGTCCTAGGGTGTTGAAATCAGTATTGGGTCTAATGGCAATTAGTTTGGCAGCATATATTTTGGGTCCACCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCCGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272837" ref_strand="+" ref_description="SGN-E272837 [cLEM-25-A24]">
      <seq>ttgaaaagcggagaaaaaaaaaacagctgatctttcttccacactctcattcatctgctattggtctccataagtaagcacaaaactaacaatttaactcaaaattgttttttccaacttctccgtttactggccagtagaaaaagcaaacagaacgaccaatggcgttgaatcaagcaggaagatcatcaccatgtagtcctagggtgttgaaatctgtattgggtctaatggcaattagtttggcagcctatattttgggtcctcctttgtattggcacttgatggaaggtttagttgctgttagccgttcttcttctgttactacttgccctccttgtaattgtgactgcaattcggaacccttctttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57828" stop="56854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57528" g_stop="57154" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E272837" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57528" e_stop="57154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAAGCGGAGAAAAAAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTA</genome_strand>
        <mrna_strand>TTGAAAAGCGGAGAAAAAAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308287" ref_strand="+" ref_description="SGN-E308287 [cLEZ-6-C3]">
      <seq>ccaaacgcgtcacagcagttgaaaagcggagaaaaaaaaaacagctgatctttcttccacactctcattcatctgctattggtctccataagtaagcacaaaactaacaatttaactcaaaattgttttttccaacttctccgtttactggccagtagaaaaagcaaacagaacgaccaatggcgttgaatcaagcaggaagatcatcaccatgtagtcctagggtgttgaaatctgtattgggtctaatggcaattagtttggcagcctatattttgggtcctcctttgtattggcacttgatggaaggtttagttgctgttagccgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57846" stop="56915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57546" g_stop="57215" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E308287" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57546" e_stop="57215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAACGCGTCACAGCAGTTGAAAAGCGGAGAAAAAAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCT</genome_strand>
        <mrna_strand>CCAAACGCGTCACAGCAGTTGAAAAGCGGAGAAAAAAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275088" ref_strand="+" ref_description="SGN-E275088 [cLEN-9-M21]">
      <seq>tctgggctaaattcccaaacgcgtcacagcagttgaaaagcggagaaaaaaaaaacagctgatctttcttccacactctcattcatctgctattggtctccataagtaagcacaaaactaacaatttaactcaaaattgttttttccaacttctccgtttactggccagtagaaaaagcaaacagaacgaccaatggcgttgaatcaagcaggaagatcatcaccatgtagtcctagggtgttgaaatctgtattgggtctaatggcaattagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="-" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="57860" stop="56987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57560" g_stop="57287" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="-" ref_id="SGN-E275088" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57560" e_stop="57287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGGCTAAATTCCCAAACGCGTCACAGCAGTTGAAAAGCGGAGAAAAAAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGT</genome_strand>
        <mrna_strand>TCTGGGCTAAATTCCCAAACGCGTCACAGCAGTTGAAAAGCGGAGAAAAAAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274748" ref_strand="+" ref_description="SGN-E274748 [cLEN-13-D14]">
      <seq>tcactctgtgccatttttgaaaaaagaagatcaagtttgcaaagatatggtttttagaagaatttggaatgtgaattgggtggtaaacatgaagttgatgcggaagatgagacgaacattctcagtttcaagtcaatctgcagttgattttgcttcaaaagatggcgaactcagggtcttcattgttgctggggaggtttctggtgatacaattgggtcccgtgtaatgggttctctaataaagctttctcctttgcctgttcgttttgctggtgttggagggaagatgatgtctaagcaagggttgaatcctttgttcccgatggaggatattgcagtaatgggcatttgggagctgctgccgtatcttaatcaatttagagttaggctcaagcaaactatagaagctgctctttcttttaagcctcatgtcgtactcactgtagacgctaaaggattttccttccgtttcctaaagcatttgaggggtaacgctctgtagcttttctacttgtgttcaacaggggatggttagcccgctggacttccattatgtattaccatcattttgggcctggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="65328" stop="67350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65628" g_stop="65661" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65662" i_stop="65759" i_length="98">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.575" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65760" g_stop="66007" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="282" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66008" i_stop="66513" i_length="506">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66514" g_stop="66613" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="382" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66614" i_stop="66769" i_length="156">
            <donor d_prob="0.027" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66770" g_stop="66894" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="507" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66895" i_stop="66975" i_length="81">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66976" g_stop="67050" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="582" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E274748" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65628" e_stop="65661"/>
          <exon e_start="65760" e_stop="66007"/>
          <exon e_start="66514" e_stop="66613"/>
          <exon e_start="66770" e_stop="66894"/>
          <exon e_start="66976" e_stop="67050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCTGTGCCATTTTTGAAAAAAGAAGATCAAGTTCAGTAATTTGATGAAATTCCCATTTCATTTACTGCTTTAGTACTTACCAAATTAAGGGTGTCTCTAAGATTTTGTGTATATTATTTTGATGATAGGTTTGCAAAGATATGGTTTTTAGAAGAATTTGGAATGTGAATTGGGTGGTAAACATGAAGTTGATGCGGAAGATGAGACGAACATTCTCAGTTTCAAGTCAATCTGCAGTTGATTTTGCTTCAAAAGATGGCGAACTCAGGGTCTTCATTGTTGCTGGGGAGGTTTCTGGTGATACAATTGGGTCCCGTGTAATGGGTTCTCTAATAAAGCTTTCTCCTTTGCCTGTTCGTTTTGCTGGTGTTGGAGGGTAACGTTTAACTTTCTTTTAGTTATCTGCTTATCATATTTTCTGCGTTTTTTAGGTCTGCCAATAACAGTTCTTTTTTGCAACTTTGTATGTTCTCCCCCACTTTCAATTTGTTTGTCGTGGTTTTGACTTGACGCATAGTTTAAAAAATGATAAAGACTTCTGAATCTTGGTAATCTTAAAACTAAAAGATATGTAGTTTAAATGGACTAAAAAGGAAAGTAGTACAAATGAATTGAAAGGGAGGAGTAACTTTTAATTTCAGTAGGAAATTTGAGGTACTCTCTTAAGATTCTAAACTGCTATAGTGTTCGCATAATGGATAACTATGTCTTGAGATGTTTTCATTCTTTCTCAGAACCCTTATTTACTATTAATTGTAGCTTGTTAAAGTTAAAATTGAAACCTGAAAGTATCTTATGCTTTTCACTAGTCAATAGTGCAGCAGGCATAAGTCAAGTTGTCAACTCCTTAATTATCATTGTTTTTCCTGTGTATGTTTACAGGAAGATGATGTCTAAGCAAGGGTTGAATCCTTTGTTCCCGATGGAGGATATTGCAGTAATGGGCATTTGGGAGCTGCTGCCGTATCTTAATCAATTTAGAGTATGGATACTTATGAATATCTGCAAAAAGAAAATCAAGTTGTGGTTTTTCCAAGTGATTACTTGAAGTGACATTTTGAAGGAAAAAGATTTATGCTGTCTGAATGGTATGATATATGCATGAACTAAGGAGCTTATTTGGATTTTAAAATGACAGGTTAGGCTCAAGCAAACTATAGAAGCTGCTCTTTCTTTTAAGCCTCATGTCGTACTCACTGTAGACGCTAAAGGATTTTCCTTCCGTTTCCTAAAGCATTTGAGGGGTAACGCTCTGTAGCTTTTGTAAGTTCGAAAGAGATTTTCAAGTTTACCTTTGCACTGGGAAATATAAGGTATTAGGAATACAAGAAATACATTTTGCAGCTACTTGTGTTCAACAGGGGATGGTTAGCCCGCTGCACTTCCATTATGTATCACCATCATTTTGGGCCTGGAAAG</genome_strand>
        <mrna_strand>TCACTCTGTGCCATTTTTGAAAAAAGAAGATCAA..................................................................................................GTTTGCAAAGATATGGTTTTTAGAAGAATTTGGAATGTGAATTGGGTGGTAAACATGAAGTTGATGCGGAAGATGAGACGAACATTCTCAGTTTCAAGTCAATCTGCAGTTGATTTTGCTTCAAAAGATGGCGAACTCAGGGTCTTCATTGTTGCTGGGGAGGTTTCTGGTGATACAATTGGGTCCCGTGTAATGGGTTCTCTAATAAAGCTTTCTCCTTTGCCTGTTCGTTTTGCTGGTGTTGGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGATGTCTAAGCAAGGGTTGAATCCTTTGTTCCCGATGGAGGATATTGCAGTAATGGGCATTTGGGAGCTGCTGCCGTATCTTAATCAATTTAGA............................................................................................................................................................GTTAGGCTCAAGCAAACTATAGAAGCTGCTCTTTCTTTTAAGCCTCATGTCGTACTCACTGTAGACGCTAAAGGATTTTCCTTCCGTTTCCTAAAGCATTTGAGGGGTAACGCTCTGTAGCTTTT.................................................................................CTACTTGTGTTCAACAGGGGATGGTTAGCCCGCTGGACTTCCATTATGTATTACCATCATTTTGGGCCTGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276890" ref_strand="+" ref_description="SGN-E276890 [cLEN-14-D14]">
      <seq>tcactctgtgccatttttgaaaaaagaagatcaagtttgcaaagatatggtttttagaagaatttggaatgtgaattgggtggtaaacatgaagttgatgcggaagatgagacgaacattctcagtttcaagtcaatctgcagttgattttgcttcaaaagatggcgaactcagggtcttcattgttgctggggaggtttctggtgatacaattgggtcccgtgtaatgggttctctaataaagctttctcctttgcctgttcgttttgctggtgttggagggaagatgatgtctaagcaagggttgaatcctttgttcccgatggaggatattgcagtaatgggcatttgggagctgctgccgtatcttaatcaatttagagttaggctcaagcaaactatagaagctgctctttcttttaagcctcatgtcgtactcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="65328" stop="67128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65628" g_stop="65661" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65662" i_stop="65759" i_length="98">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.575" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65760" g_stop="66007" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="282" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66008" i_stop="66513" i_length="506">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66514" g_stop="66613" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="382" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66614" i_stop="66769" i_length="156">
            <donor d_prob="0.027" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66770" g_stop="66828" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="441" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E276890" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65628" e_stop="65661"/>
          <exon e_start="65760" e_stop="66007"/>
          <exon e_start="66514" e_stop="66613"/>
          <exon e_start="66770" e_stop="66828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCTGTGCCATTTTTGAAAAAAGAAGATCAAGTTCAGTAATTTGATGAAATTCCCATTTCATTTACTGCTTTAGTACTTACCAAATTAAGGGTGTCTCTAAGATTTTGTGTATATTATTTTGATGATAGGTTTGCAAAGATATGGTTTTTAGAAGAATTTGGAATGTGAATTGGGTGGTAAACATGAAGTTGATGCGGAAGATGAGACGAACATTCTCAGTTTCAAGTCAATCTGCAGTTGATTTTGCTTCAAAAGATGGCGAACTCAGGGTCTTCATTGTTGCTGGGGAGGTTTCTGGTGATACAATTGGGTCCCGTGTAATGGGTTCTCTAATAAAGCTTTCTCCTTTGCCTGTTCGTTTTGCTGGTGTTGGAGGGTAACGTTTAACTTTCTTTTAGTTATCTGCTTATCATATTTTCTGCGTTTTTTAGGTCTGCCAATAACAGTTCTTTTTTGCAACTTTGTATGTTCTCCCCCACTTTCAATTTGTTTGTCGTGGTTTTGACTTGACGCATAGTTTAAAAAATGATAAAGACTTCTGAATCTTGGTAATCTTAAAACTAAAAGATATGTAGTTTAAATGGACTAAAAAGGAAAGTAGTACAAATGAATTGAAAGGGAGGAGTAACTTTTAATTTCAGTAGGAAATTTGAGGTACTCTCTTAAGATTCTAAACTGCTATAGTGTTCGCATAATGGATAACTATGTCTTGAGATGTTTTCATTCTTTCTCAGAACCCTTATTTACTATTAATTGTAGCTTGTTAAAGTTAAAATTGAAACCTGAAAGTATCTTATGCTTTTCACTAGTCAATAGTGCAGCAGGCATAAGTCAAGTTGTCAACTCCTTAATTATCATTGTTTTTCCTGTGTATGTTTACAGGAAGATGATGTCTAAGCAAGGGTTGAATCCTTTGTTCCCGATGGAGGATATTGCAGTAATGGGCATTTGGGAGCTGCTGCCGTATCTTAATCAATTTAGAGTATGGATACTTATGAATATCTGCAAAAAGAAAATCAAGTTGTGGTTTTTCCAAGTGATTACTTGAAGTGACATTTTGAAGGAAAAAGATTTATGCTGTCTGAATGGTATGATATATGCATGAACTAAGGAGCTTATTTGGATTTTAAAATGACAGGTTAGGCTCAAGCAAACTATAGAAGCTGCTCTTTCTTTTAAGCCTCATGTCGTACTCAC</genome_strand>
        <mrna_strand>TCACTCTGTGCCATTTTTGAAAAAAGAAGATCAA..................................................................................................GTTTGCAAAGATATGGTTTTTAGAAGAATTTGGAATGTGAATTGGGTGGTAAACATGAAGTTGATGCGGAAGATGAGACGAACATTCTCAGTTTCAAGTCAATCTGCAGTTGATTTTGCTTCAAAAGATGGCGAACTCAGGGTCTTCATTGTTGCTGGGGAGGTTTCTGGTGATACAATTGGGTCCCGTGTAATGGGTTCTCTAATAAAGCTTTCTCCTTTGCCTGTTCGTTTTGCTGGTGTTGGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGATGTCTAAGCAAGGGTTGAATCCTTTGTTCCCGATGGAGGATATTGCAGTAATGGGCATTTGGGAGCTGCTGCCGTATCTTAATCAATTTAGA............................................................................................................................................................GTTAGGCTCAAGCAAACTATAGAAGCTGCTCTTTCTTTTAAGCCTCATGTCGTACTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212940" ref_strand="+" ref_description="SGN-E212940 [cLEC-73-N18]">
      <seq>gggaacggacagtagatttcagtgaagagaacaaaaaaatcctgactgaacacaacactcttttcaatttgctcgacaatggcattcgagctcccaagtgatctgatccaacaagccaagatcttgacccgaaccgaagcgggtctacccgactacctccctgatgactcatcacttccggccatgccttctctttccgccaccgtcgccgccttcgatccttctccaccctatctccgctgtaagcactgccatggtaggcttctcagagggctcgagtccttgatttgcatatattgtggccacaaattgcaccaaaaccctgacgttgctcctgaacccatttcatttaagtccactgtgggctatcaatggtttctccaagctcttcgccttgatggatcggagaaggttggagcagctactgaaaagaatcaggtgaacaaggggccgagttcacctcatgatgaagttcttttatctgatttccttgatctgaaaataagatggccaactgagctggagacagacaacactatcatgaccaagaagctagagcntagcaaaagctcttatgatccgactggatttgacctggatactttctttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="72018" stop="74510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72318" g_stop="72722" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72723" i_stop="74001" i_length="1279">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74002" g_stop="74210" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="613" r_length="208" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E212940" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72318" e_stop="72722"/>
          <exon e_start="74002" e_stop="74210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAACGGACAGTAGATTTCAGTGAAGAGAACAAAAAAATCCTGACTGAACACAACACTCTTTTCAATTTGCTCGACAATGGCATTCGAGCTCCCAAGTGATCTGATCCAACAAGCCAAGATCTTGACCCGAACCGAAGCGGGTCTACCCGACTACCTCCCTGATGACTCATCACTTCCGGCCATGCCTTCTCTTTCCGCCACCGTCGCCGCCTTCGATCCTTCTCCACCCTATCTCCGCTGTAAGCACTGCCAAGGTAGGCTTCTCAGAGGGCTCGAGTCCTTGATTTGCATATATTGTGGCCACAAATTGCACCAAAACCCTGACGTTGCTCCTGAACCCATTTCATTTAAGTCCACTGTGGGCTATCAATGGTTTCTCCAAGCTCTTCGCCTTGATGGATCGGTATGTCGAGTCTCTCTACCTGAAACACACTCAGTTTGCTTATTTCTCTATGAAATAGTTTTGGTTGCTTCCTGTTATGGGTATTGATAATGCAAGATCAGATCTTCTCTATTATGTTTTGCAGATTAGGATTTTGAATTTTATTTTGAAAATATATTATATTTATACTGGATTCTAACCTACTTTTGCGTTTTTTTTTAATAATTGAACAAAAGCAAGTCTGAATGAGTATACTTAGTCGTGGAGCATTCCGGGTCTTTGTTTTAGGTATCGTTCCTGGGCATCTCCTTACTTTATAGCAGTTATTGTTCTGGTTCCAGAAGGTATAGCTCTCACCTCAGCTTTTTTCTTGAAATCAGAGACTCTACCAATTTCCTACCGAGATAGGCAAGTGGAGGGAGAACTAGACATGTCTTGCTAGGCAAAGATAGGTTAGAATGGATAGTCGCAGGTGGGATTGACGGGATAGATCACTATTGCAGAAGGAGTTATGTGACCTGCGATTAGTGAGTGCTGGTGTTCTTCAAATCTTCTAACTTAGTATCCTTGGTAGATCGTATGGGGTGTGCCTTCTGCTTATTGCTTTATAGGGGTAGTTTATTTTATACACCAGCTTGCACGCACCTCCACTAATTCTATGGGATATCTGCCACCTCCCACCACCAACAGTTACCATGTAGCTTTGTCCACCAAGGCTAGGACAACGAGAAGAAATCACCTGGTGTTTTGTATATTCTAGGACTTGAACCTGAGACCTTATGATGCTCAACCCACTTTATTGATTAGTAGGACACACCTCTGGGTTTTATATGAGTATGGTTATTCCTACCAGTTACGGAAGAACAATAATGCAAGATGAGAGATTTTCTTAAAATTCTTTTTAGAAACTGGTATATTTACACTCAATTCTAACCAATGGTGAGGAATTAGTAAGTGCAGTGGTGCCTCGAGTCCACCTTGCTAGATTATATTGTTTTTTTCTTCCTCTATCTCAAATCACAATTTTGCTCATTGCTCTATCTCAATGTCTGGCTTGCTTCCAGTTATAGAGGGCAGATAATCCAAGACTGGGCTTCTTTGTGTTTTGTTGAAAATCTATATATAAAAAAGACTTAGTTGGTTGAATGTTACTCGAATCCACTATCCATAAAGTGTAATCAGTCTCTGTTTCTCACTAAATCTTCCTTTTTTTCTTATGCCTTCTAGTATTTCTGATAGACTCTTGTTAACTTGTTGAATTAGGAGTATATGTTAAGAACTTGTCCCATTTGGTTTCCAGGAGAAGGTTGGAGCAGCTACTGAAAAGAATCAGGTGAACAAGGGGCCGAGTTCACCTCATGATGAAGTTCTTTTATCTGATTTCCTTGATCTGAAAATAAGATGGCCAACTGAGCTGGAGACAGACAACACTATCATGACCAAGAAGCTAGAGCTAAGCAAAAGCTCTTATGATCCGACTGGATTTGACCTGGATAACTTTCTTTCTTT</genome_strand>
        <mrna_strand>GGGAACGGACAGTAGATTTCAGTGAAGAGAACAAAAAAATCCTGACTGAACACAACACTCTTTTCAATTTGCTCGACAATGGCATTCGAGCTCCCAAGTGATCTGATCCAACAAGCCAAGATCTTGACCCGAACCGAAGCGGGTCTACCCGACTACCTCCCTGATGACTCATCACTTCCGGCCATGCCTTCTCTTTCCGCCACCGTCGCCGCCTTCGATCCTTCTCCACCCTATCTCCGCTGTAAGCACTGCCATGGTAGGCTTCTCAGAGGGCTCGAGTCCTTGATTTGCATATATTGTGGCCACAAATTGCACCAAAACCCTGACGTTGCTCCTGAACCCATTTCATTTAAGTCCACTGTGGGCTATCAATGGTTTCTCCAAGCTCTTCGCCTTGATGGATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGTTGGAGCAGCTACTGAAAAGAATCAGGTGAACAAGGGGCCGAGTTCACCTCATGATGAAGTTCTTTTATCTGATTTCCTTGATCTGAAAATAAGATGGCCAACTGAGCTGGAGACAGACAACACTATCATGACCAAGAAGCTAGAGCNTAGCAAAAGCTCTTATGATCCGACTGGATTTGACCTGGAT-ACTTTCTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328102" ref_strand="+" ref_description="SGN-E328102 [cTOC-22-N3]">
      <seq>tgatctgatccaacaagccaagatcttgacccgaaccgaagcgggtctacccgactacctccctgatgactcatcacttccgggcatgccttctctttccgccaccgtcgccgcctgcgatccttctccaccctatctccgctgtaaacactgccatggtaggcttctcatagggctcgagtccttgatttgcatatattgtggccacaaattgcaccaaaaccctgacgttgctcctgaacccatttcatttaggtccactgtgggctatcaatggtttctccaagctcttcgccttgatggatcggagaaggctggagcggctactgaaaagaatcaggtgaacaaggggccgagttcacctcatgatgaagctctttgatctgatttccttgatctgaaaataagatggccgactgagctggagacagaccacactatcatgaccaagaagctagagctaagcatcagctcgtatgatccgactggatttgacctgtataactgtctttctttgccaaagagggagaacatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="72116" stop="74531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72416" g_stop="72722" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72723" i_stop="74001" i_length="1279">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74002" g_stop="74231" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="537" r_length="230" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E328102" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72416" e_stop="72722"/>
          <exon e_start="74002" e_stop="74231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTGATCCAACAAGCCAAGATCTTGACCCGAACCGAAGCGGGTCTACCCGACTACCTCCCTGATGACTCATCACTTCCGGCCATGCCTTCTCTTTCCGCCACCGTCGCCGCCTTCGATCCTTCTCCACCCTATCTCCGCTGTAAGCACTGCCAAGGTAGGCTTCTCAGAGGGCTCGAGTCCTTGATTTGCATATATTGTGGCCACAAATTGCACCAAAACCCTGACGTTGCTCCTGAACCCATTTCATTTAAGTCCACTGTGGGCTATCAATGGTTTCTCCAAGCTCTTCGCCTTGATGGATCGGTATGTCGAGTCTCTCTACCTGAAACACACTCAGTTTGCTTATTTCTCTATGAAATAGTTTTGGTTGCTTCCTGTTATGGGTATTGATAATGCAAGATCAGATCTTCTCTATTATGTTTTGCAGATTAGGATTTTGAATTTTATTTTGAAAATATATTATATTTATACTGGATTCTAACCTACTTTTGCGTTTTTTTTTAATAATTGAACAAAAGCAAGTCTGAATGAGTATACTTAGTCGTGGAGCATTCCGGGTCTTTGTTTTAGGTATCGTTCCTGGGCATCTCCTTACTTTATAGCAGTTATTGTTCTGGTTCCAGAAGGTATAGCTCTCACCTCAGCTTTTTTCTTGAAATCAGAGACTCTACCAATTTCCTACCGAGATAGGCAAGTGGAGGGAGAACTAGACATGTCTTGCTAGGCAAAGATAGGTTAGAATGGATAGTCGCAGGTGGGATTGACGGGATAGATCACTATTGCAGAAGGAGTTATGTGACCTGCGATTAGTGAGTGCTGGTGTTCTTCAAATCTTCTAACTTAGTATCCTTGGTAGATCGTATGGGGTGTGCCTTCTGCTTATTGCTTTATAGGGGTAGTTTATTTTATACACCAGCTTGCACGCACCTCCACTAATTCTATGGGATATCTGCCACCTCCCACCACCAACAGTTACCATGTAGCTTTGTCCACCAAGGCTAGGACAACGAGAAGAAATCACCTGGTGTTTTGTATATTCTAGGACTTGAACCTGAGACCTTATGATGCTCAACCCACTTTATTGATTAGTAGGACACACCTCTGGGTTTTATATGAGTATGGTTATTCCTACCAGTTACGGAAGAACAATAATGCAAGATGAGAGATTTTCTTAAAATTCTTTTTAGAAACTGGTATATTTACACTCAATTCTAACCAATGGTGAGGAATTAGTAAGTGCAGTGGTGCCTCGAGTCCACCTTGCTAGATTATATTGTTTTTTTCTTCCTCTATCTCAAATCACAATTTTGCTCATTGCTCTATCTCAATGTCTGGCTTGCTTCCAGTTATAGAGGGCAGATAATCCAAGACTGGGCTTCTTTGTGTTTTGTTGAAAATCTATATATAAAAAAGACTTAGTTGGTTGAATGTTACTCGAATCCACTATCCATAAAGTGTAATCAGTCTCTGTTTCTCACTAAATCTTCCTTTTTTTCTTATGCCTTCTAGTATTTCTGATAGACTCTTGTTAACTTGTTGAATTAGGAGTATATGTTAAGAACTTGTCCCATTTGGTTTCCAGGAGAAGGTTGGAGCAGCTACTGAAAAGAATCAGGTGAACAAGGGGCCGAGTTCACCTCATGATGAAGTTCTTTTATCTGATTTCCTTGATCTGAAAATAAGATGGCCAACTGAGCTGGAGACAGACAACACTATCATGACCAAGAAGCTAGAGCTAAGCAAAAGCTCTTATGATCCGACTGGATTTGACCTGGATAACTTTCTTTCTTTTCCAAAGAGGGAGAACATATC</genome_strand>
        <mrna_strand>TGATCTGATCCAACAAGCCAAGATCTTGACCCGAACCGAAGCGGGTCTACCCGACTACCTCCCTGATGACTCATCACTTCCGGGCATGCCTTCTCTTTCCGCCACCGTCGCCGCCTGCGATCCTTCTCCACCCTATCTCCGCTGTAAACACTGCCATGGTAGGCTTCTCATAGGGCTCGAGTCCTTGATTTGCATATATTGTGGCCACAAATTGCACCAAAACCCTGACGTTGCTCCTGAACCCATTTCATTTAGGTCCACTGTGGGCTATCAATGGTTTCTCCAAGCTCTTCGCCTTGATGGATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGCTGGAGCGGCTACTGAAAAGAATCAGGTGAACAAGGGGCCGAGTTCACCTCATGATGAAGCTCTTTGATCTGATTTCCTTGATCTGAAAATAAGATGGCCGACTGAGCTGGAGACAGACCACACTATCATGACCAAGAAGCTAGAGCTAAGCATCAGCTCGTATGATCCGACTGGATTTGACCTGTATAACTGTCTTTCTTTGCCAAAGAGGGAGAACATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714334" ref_strand="+" ref_description="SGN-E714334 [FB11AF08]">
      <seq>caatgacgcagaactaacaaattttagttcaaatcttgaagatatggattttggcagtttttcgcagtcagatcctttttcaggtgcacctggcaaagaaggtgtttctgcggaagggaatggagatattttggaagttcctaccatattcagtaccgttgataccccaagcaaggttggtgacgatgctggacatgcttcagagaatgcagccattcatgctgaatcaaatccattgaagaatgatatgaatatagaaagtataatgtcacagatgcatgatctttcttttatgctcgagaccaatctatccattccctcaaaatccaacatttcttctcccaaagattgatacatcactttgctcgtgtggtttgacttcaatattcatgtaatcaagctgtacctgttcatgtattttataataagagaatatgcttgtttttgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0053G19-xhXtC/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07SLm0053G19.1" temp_strand="+" temp_description="C07SLm0053G19.1  AC232635.2 htgs_phase:2 submitted_to_sgn_as:gi|208879545|gb|AC232635.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0053G19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces">
        <position start="74784" stop="77406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75084" g_stop="75236" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75237" i_stop="76810" i_length="1574">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76811" g_stop="77106" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="449" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="460"/>
      <MATCH_line gen_id="C07SLm0053G19.1" gen_strand="+" ref_id="SGN-E714334" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0053G19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75084" e_stop="75236"/>
          <exon e_start="76811" e_stop="77106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGACGCAGAACTAACAAATTTTAGTTCAAATCTTGAAGATATGGATTTTGGCAGTTTTTCGCAGTCAGATCCTTTTTCAGGTGCACCTGGCAAAGAAGGTGTTTCTGCGGAAGGGAATGGAGATATTTTGGAAGTTCCTACCATATTCAGGTGTGCGCATGTTTTTATTATTTCATTATATGGCCTCAATATTGGCTGATTTTATTTGTGGAGATTCTGAAGAACATAGGCATCAACTATGGCTCTTATACTGTGGTTGGGTTGAAAAGAGAAGGAGCTGGAAGAGCACAAGGAAATGCGAGATTAGGTTGAGTTCCCTTATTAAGAGTAAAGGAGGTGAAGTAAATTTAAAGGGGTCAGAATATCCCTCCACATAAGCTTTTCCCATTTGGAAAGGAAGTAGAATTTTTTTTGGATCTACTTCCTTCTATACAAAATGATTGGAAGTAAATTATCTGAATATTACCTTGGGGACAGAATTAAGTTAATTTCTCTCTTTCACCCTTGCTCCCCTTCGTAGAACTAAAATAGAATTAAAGTAGAAATAAAGGAATTAGATCTGAATTCTGAACATATTAAAATAACAGAATACGAGTGTCAGAAAAAGCAATAGAAAAGAAAGAATCTGGAAGACCACAGGCTTCTACCATGGCTCTGAAAGTAAAATATAACAAATTTAGTCAGAAATTTGTAGGAAAAAAAAATACTGCAGTATCCACTGAAAGTTCCTTGGAGTAGCTAAGCATATAATAAGCTTAAGATAGCTTAGAAGTTTTATGGTTCAACTTTAGTGCGAATTTGAGTCTGAAGAAGTAGGAACTGGATGTTGAGTGGTAAGTGTCTACATCCTTGTGGTGCAAGGTCACATTCTCATTGGATTCCTCTTCCCCTTTGACCTACCCACACCTGAAAACAAGAATTTCAAAGCATGGGAAAAAAGATCGTCATGTTCACGGAAGAGTTCTTAAATTTTTTAATGGCTTAGAGATTGAAAGGGAAGAGCCTGGAGAAGTAAGATTACGTGGGCTCTTTGGGAGCAGGGGCTGAGGATGGTGTGTTCCCTTGTTCCCAGAAAAGTAAACTCGCAACAATAGCAACGATGGTTCAAATCCAACCACCCCTGCTCGTTCCCCAACAACATACCCAGTATAGTTCCACAAGTGAGGTTGGGGAGAGTGGGCTGTATGCAGACCTTACCCTACCTATGCGTGTGCTTGTGTGTGTGGGTGGGGGGGGGGGGTAGAGTCTGTTTTCGATAGCCCCCCTCCCCCTCAAAAAGAAAAAAAAATGTTAAACCATTTCTAGCTTGTCAAAAGGTAAAAAAGGCCTGTTAGAATAGATTTGATTTCTGTCCAGGACAGTTGGTTTGTATTAGTTTGCTGGTTAAGTCTGTCTGTTGTTCTTGAGATAGTGTAACCGTGGGATGTGGCTGGAGTATCCAAGGTGAAATTTGAGATTATCTATTGTTCTTCAGTGGAGTATAACTTAGGGATGCTGGGATGTACACTGCCTGAGACAGAGCAGTAGAAGAAAGAGATTCAGAAATAGATGGAAAAGGTTTTTTTTAACAAGCTGGCGAAATAATGATACATCTGACCTTTGAGAGTTTTACCTTGTTCAACCATGATTGAATTCTTGTTTTCCTTGTTACTACTATTTAACTGTTAACTTCCTACACTCTAGTTCAATCAACAATTTCTAATAATTCATTTTACATCTTTTAGTACCGTTGATACCCCAAGCAAGGTTGGTGACGATGCTGGACATGCTTCAGAGAATGCAGCCATTCATGCTGAATCAAATCCATTGAAGAATGATATGAATATAGAAAGTATAATGTCACAGATGCATGATCTTTCTTTTATGCTCGAGACCAATCTATCCATTCCCTCAAAATCCAACATTTCTTCTCCCAAAGATTGATACATCACTTTGCTCGTGTGGTTTGACTTCAATATTCATGTAATCAAGCTGTACCTGTTCATGTATTTTATAATAAGAGAATATGCTTGTTTTTGTA</genome_strand>
        <mrna_strand>CAATGACGCAGAACTAACAAATTTTAGTTCAAATCTTGAAGATATGGATTTTGGCAGTTTTTCGCAGTCAGATCCTTTTTCAGGTGCACCTGGCAAAGAAGGTGTTTCTGCGGAAGGGAATGGAGATATTTTGGAAGTTCCTACCATATTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGTTGATACCCCAAGCAAGGTTGGTGACGATGCTGGACATGCTTCAGAGAATGCAGCCATTCATGCTGAATCAAATCCATTGAAGAATGATATGAATATAGAAAGTATAATGTCACAGATGCATGATCTTTCTTTTATGCTCGAGACCAATCTATCCATTCCCTCAAAATCCAACATTTCTTCTCCCAAAGATTGATACATCACTTTGCTCGTGTGGTTTGACTTCAATATTCATGTAATCAAGCTGTACCTGTTCATGTATTTTATAATAAGAGAATATGCTTGTTTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>150</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4347" PGL_stop="6134"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4347" e_stop="4848"/>
            <exon e_start="4974" e_stop="6134"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="0.998"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="4347" e_stop="4848" e_length="502"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="4849" i_stop="4973" i_length="125"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="4974" e_stop="6134" e_length="1161"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4347" stop="4848"/>
              <exon start="4974" stop="5036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4349" stop="4848"/>
              <exon start="4974" stop="5326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4349" stop="4848"/>
              <exon start="4974" stop="5139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4349" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4350" stop="4848"/>
              <exon start="4974" stop="5031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4350" stop="4848"/>
              <exon start="4974" stop="4990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4351" stop="4848"/>
              <exon start="4974" stop="5119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370072" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4351" stop="4848"/>
              <exon start="4974" stop="5083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4352" stop="4638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4362" stop="4825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4472" stop="4637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4979" stop="5431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5052" stop="5831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5218" stop="5819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5218" stop="5812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5248" stop="5999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5248" stop="5999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5643" stop="5922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5727" stop="6134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351629" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCAAAATCTTCTTCATATCTCCATTTTTATTCAATAATGGATTCAATTAAGCCATCCTCATCACAATTAGTATTCACGGTGAGAAGGCAAAATGCAGAGCTAATTGCTCCAGCAAAGCCAACTCCACGTGAAACTAAATTTCTCTCAGACATTGATGATCAAGAAGGTCTTCGATTTCAAATCCCCGTTATTAATTTTTATCGTAAAGATTCGGATATTTCTACGGGAGGAAATCATGACCCTGTAAAAGTGATTAAAAAGGCAATAGCTGAAACACTTGTTTTTTACTATCCGTTTGCTGGTCGGCTCCGGGAAGGAAATGGCCGGAAACTGATGGTGGATTGTACCGGGGAAGGAGTTATGTTCGTGGAAGCGGATGCTGATGTGACCCTTGAACAATTTGGAGATGAACTTCAGCCTCCATTTCCGTGTTTGGAAGAACTCCTTTATGATGTTCCTGGCTCTGCTGAAGTTCTTAATTCTCCTCTGCTTCTTATTCAG : GTCACTCGTCTCAAGTGTGGTGGTTTCATTTTCGCAGTGCGATTAAACCACACAATGAGTGATGCAGCCGGTCTTGTCCAATTCATGACTGCTGTTGGTGAAATGGCACGCGGGGCCTCTGTTCCGTCTACACTCCCTGTCTGGTCCAGAGAATTGCTCAACTCCCGTGATCCACCTCGAGTGACTTGCACCCACCATGAATACGATGAAGTTCCTGATACAAAGGGTACAATTATCCCATTAGATGATATGGTACACAAATCATTCTTTTTTGGCCCTTCTCAAGTCTCAGCTCTTCGTCGATTCATCCCTCCTCATTTGCGCAAATCTTCCACTTTTGAATTGCTCACATCAGTCCTCTGGCGCTGCCGCACAATTTCCCTAAAACCAGATCCTGAAGAGGAAGTTCGCGTGCTTTGCCTTGTCAATGCACGTTCCAAGTTCAATCCACCCTTACCTAACGGCTTCTACGGGAACGCCTTTGCGTTCCCCGTAGCAGTCACAACCGCAGCTAAATTGTGTAAAAATCCATTAGGATATGCTCTTGAGCTAGTGAAGAAGGCTAAGTCGGACGTGACGGAAGAATACATGAAATCCGTAGCGGATTTGATGGTGATGAAAGGAAGGCCTCATTTCACAGTGGTGCGGACTTATCTGGTGTCAGACGTGACTCGAGCGGGATTCGGAGAAGTAGATTTTGGATGGGGGAAAGCAGCGTATGGTGGACCGGCTAAAGGAGGAGTAGGAGCAATCCCTGGTGTGGCGAGTTTTTACATACCATTTAAAAACAAAAATGGTGAAAATGGAATTGTGGTGCCTGTATGTTTGCCTGCTTTTGCAATGGAAATATTCGTTAGGGAACTCAATGGCATGTTGAAAAGTGAAGAAGATCCATTAGGCAAATACACAAACTATGCCATCATCAAACCCGCACTTTGACATGTTAATCGCATGCAATATTTCTTTTTAACTTGGTTTTGTAAAGCATTTTAATATCCTTAATTTATGTTAAGAGTGCTTTTACCAATTCCTTCCCTGCGTAATTACATTTTTTTTTTCGATGCATTACTTTCTTTTGTCAGTTGATGACATCTTTGTGAAGTGAATGTAATGGTCCTCCGTTGTGTTCCCTGGCAGAATGTGCAGTGGTCAACTATTAAG</gDNA_template>
            <first_frame> S  K  I  F  F  I  S  P  F  L  F  N  N  G  F  N  *  A  I  L  I  T  I  S  I  H  G  E  K  A  K  C  R  A  N  C  S  S  K  A  N  S  T  *  N  *  I  S  L  R  H  *  *  S  R  R  S  S  I  S  N  P  R  Y  *  F  L  S  *  R  F  G  Y  F  Y  G  R  K  S  *  P  C  K  S  D  *  K  G  N  S  *  N  T  C  F  L  L  S  V  C  W  S  A  P  G  R  K  W  P  E  T  D  G  G  L  Y  R  G  R  S  Y  V  R  G  S  G  C  *  C  D  P  *  T  I  W  R  *  T  S  A  S  I  S  V  F  G  R  T  P  L  *  C  S  W  L  C  *  S  S  *  F  S  S  A  S  Y  S   : G  H  S  S  Q  V  W  W  F  H  F  R  S  A  I  K  P  H  N  E  *  C  S  R  S  C  P  I  H  D  C  C  W  *  N  G  T  R  G  L  C  S  V  Y  T  P  C  L  V  Q  R  I  A  Q  L  P  *  S  T  S  S  D  L  H  P  P  *  I  R  *  S  S  *  Y  K  G  Y  N  Y  P  I  R  *  Y  G  T  Q  I  I  L  F  W  P  F  S  S  L  S  S  S  S  I  H  P  S  S  F  A  Q  I  F  H  F  *  I  A  H  I  S  P  L  A  L  P  H  N  F  P  K  T  R  S  *  R  G  S  S  R  A  L  P  C  Q  C  T  F  Q  V  Q  S  T  L  T  *  R  L  L  R  E  R  L  C  V  P  R  S  S  H  N  R  S  *  I  V  *  K  S  I  R  I  C  S  *  A  S  E  E  G  *  V  G  R  D  G  R  I  H  E  I  R  S  G  F  D  G  D  E  R  K  A  S  F  H  S  G  A  D  L  S  G  V  R  R  D  S  S  G  I  R  R  S  R  F  W  M  G  E  S  S  V  W  W  T  G  *  R  R  S  R  S  N  P  W  C  G  E  F  L  H  T  I  *  K  Q  K  W  *  K  W  N  C  G  A  C  M  F  A  C  F  C  N  G  N  I  R  *  G  T  Q  W  H  V  E  K  *  R  R  S  I  R  Q  I  H  K  L  C  H  H  Q  T  R  T  L  T  C  *  S  H  A  I  F  L  F  N  L  V  L  *  S  I  L  I  S  L  I  Y  V  K  S  A  F  T  N  S  F  P  A  *  L  H  F  F  F  R  C  I  T  F  F  C  Q  L  M  T  S  L  *  S  E  C  N  G  P  P  L  C  S  L  A  E  C  A  V  V  N  Y  *  </first_frame>
            <second_frame>  P  K  S  S  S  Y  L  H  F  Y  S  I  M  D  S  I  K  P  S  S  S  Q  L  V  F  T  V  R  R  Q  N  A  E  L  I  A  P  A  K  P  T  P  R  E  T  K  F  L  S  D  I  D  D  Q  E  G  L  R  F  Q  I  P  V  I  N  F  Y  R  K  D  S  D  I  S  T  G  G  N  H  D  P  V  K  V  I  K  K  A  I  A  E  T  L  V  F  Y  Y  P  F  A  G  R  L  R  E  G  N  G  R  K  L  M  V  D  C  T  G  E  G  V  M  F  V  E  A  D  A  D  V  T  L  E  Q  F  G  D  E  L  Q  P  P  F  P  C  L  E  E  L  L  Y  D  V  P  G  S  A  E  V  L  N  S  P  L  L  L  I  Q  :  V  T  R  L  K  C  G  G  F  I  F  A  V  R  L  N  H  T  M  S  D  A  A  G  L  V  Q  F  M  T  A  V  G  E  M  A  R  G  A  S  V  P  S  T  L  P  V  W  S  R  E  L  L  N  S  R  D  P  P  R  V  T  C  T  H  H  E  Y  D  E  V  P  D  T  K  G  T  I  I  P  L  D  D  M  V  H  K  S  F  F  F  G  P  S  Q  V  S  A  L  R  R  F  I  P  P  H  L  R  K  S  S  T  F  E  L  L  T  S  V  L  W  R  C  R  T  I  S  L  K  P  D  P  E  E  E  V  R  V  L  C  L  V  N  A  R  S  K  F  N  P  P  L  P  N  G  F  Y  G  N  A  F  A  F  P  V  A  V  T  T  A  A  K  L  C  K  N  P  L  G  Y  A  L  E  L  V  K  K  A  K  S  D  V  T  E  E  Y  M  K  S  V  A  D  L  M  V  M  K  G  R  P  H  F  T  V  V  R  T  Y  L  V  S  D  V  T  R  A  G  F  G  E  V  D  F  G  W  G  K  A  A  Y  G  G  P  A  K  G  G  V  G  A  I  P  G  V  A  S  F  Y  I  P  F  K  N  K  N  G  E  N  G  I  V  V  P  V  C  L  P  A  F  A  M  E  I  F  V  R  E  L  N  G  M  L  K  S  E  E  D  P  L  G  K  Y  T  N  Y  A  I  I  K  P  A  L  *  H  V  N  R  M  Q  Y  F  F  L  T  W  F  C  K  A  F  *  Y  P  *  F  M  L  R  V  L  L  P  I  P  S  L  R  N  Y  I  F  F  F  D  A  L  L  S  F  V  S  *  *  H  L  C  E  V  N  V  M  V  L  R  C  V  P  W  Q  N  V  Q  W  S  T  I  K </second_frame>
            <third_frame>   Q  N  L  L  H  I  S  I  F  I  Q  *  W  I  Q  L  S  H  P  H  H  N  *  Y  S  R  *  E  G  K  M  Q  S  *  L  L  Q  Q  S  Q  L  H  V  K  L  N  F  S  Q  T  L  M  I  K  K  V  F  D  F  K  S  P  L  L  I  F  I  V  K  I  R  I  F  L  R  E  E  I  M  T  L  *  K  *  L  K  R  Q  *  L  K  H  L  F  F  T  I  R  L  L  V  G  S  G  K  E  M  A  G  N  *  W  W  I  V  P  G  K  E  L  C  S  W  K  R  M  L  M  *  P  L  N  N  L  E  M  N  F  S  L  H  F  R  V  W  K  N  S  F  M  M  F  L  A  L  L  K  F  L  I  L  L  C  F  L  F  R :   S  L  V  S  S  V  V  V  S  F  S  Q  C  D  *  T  T  Q  *  V  M  Q  P  V  L  S  N  S  *  L  L  L  V  K  W  H  A  G  P  L  F  R  L  H  S  L  S  G  P  E  N  C  S  T  P  V  I  H  L  E  *  L  A  P  T  M  N  T  M  K  F  L  I  Q  R  V  Q  L  S  H  *  M  I  W  Y  T  N  H  S  F  L  A  L  L  K  S  Q  L  F  V  D  S  S  L  L  I  C  A  N  L  P  L  L  N  C  S  H  Q  S  S  G  A  A  A  Q  F  P  *  N  Q  I  L  K  R  K  F  A  C  F  A  L  S  M  H  V  P  S  S  I  H  P  Y  L  T  A  S  T  G  T  P  L  R  S  P  *  Q  S  Q  P  Q  L  N  C  V  K  I  H  *  D  M  L  L  S  *  *  R  R  L  S  R  T  *  R  K  N  T  *  N  P  *  R  I  *  W  *  *  K  E  G  L  I  S  Q  W  C  G  L  I  W  C  Q  T  *  L  E  R  D  S  E  K  *  I  L  D  G  G  K  Q  R  M  V  D  R  L  K  E  E  *  E  Q  S  L  V  W  R  V  F  T  Y  H  L  K  T  K  M  V  K  M  E  L  W  C  L  Y  V  C  L  L  L  Q  W  K  Y  S  L  G  N  S  M  A  C  *  K  V  K  K  I  H  *  A  N  T  Q  T  M  P  S  S  N  P  H  F  D  M  L  I  A  C  N  I  S  F  *  L  G  F  V  K  H  F  N  I  L  N  L  C  *  E  C  F  Y  Q  F  L  P  C  V  I  T  F  F  F  S  M  H  Y  F  L  L  S  V  D  D  I  F  V  K  *  M  *  W  S  S  V  V  F  P  G  R  M  C  S  G  Q  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0053G19.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4348" stop="4848"/>
                    <exon start="4974" stop="5912"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1437</number_coding_nucleotides>
                  <number_encoded_amino_acids>479</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKSSSYLHFYSIMDSIKPSSSQLVFTVRRQNAELIAPAKPTPRETKFLSDIDDQEGLRFQIPVINFYRKDSDISTGGNHDPVKVIKKAIAETLVFYYPFAGRLREGNGRKLMVDCTGEGVMFVEADADVTLEQFGDELQPPFPCLEELLYDVPGSAEVLNSPLLLIQVTRLKCGGFIFAVRLNHTMSDAAGLVQFMTAVGEMARGASVPSTLPVWSRELLNSRDPPRVTCTHHEYDEVPDTKGTIIPLDDMVHKSFFFGPSQVSALRRFIPPHLRKSSTFELLTSVLWRCRTISLKPDPEEEVRVLCLVNARSKFNPPLPNGFYGNAFAFPVAVTTAAKLCKNPLGYALELVKKAKSDVTEEYMKSVADLMVMKGRPHFTVVRTYLVSDVTRAGFGEVDFGWGKAAYGGPAKGGVGAIPGVASFYIPFKNKNGENGIVVPVCLPAFAMEIFVRELNGMLKSEEDPLGKYTNYAIIKPAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="13592" PGL_stop="14226"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13592" e_stop="14015"/>
            <exon e_start="14125" e_stop="14226"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.658" e_score="0.995"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="13592" e_stop="14015" e_length="424"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.658">
            <gDNA_intron_boundary i_start="14016" i_stop="14124" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="14125" e_stop="14226" e_length="102"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13592" stop="14015"/>
              <exon start="14125" stop="14226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13685" stop="14015"/>
              <exon start="14125" stop="14150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13701" stop="13976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337967" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCGCAAATTCAAAATTGGAAAAGGTGGGAAATCACAAATCACTTTCCCAATCCGAACGGCAACCAGAAGCTCCCATTCTTCTCACCGCTCTCTAACCGGAAACTTCCACCGGCGCACGCACCACTTCTCAGGTTCACTTCTCGTAACGTGTAAGTCTACTAGATCTATAAATTGACGACTGCAATGGCGGAAATCATAAGCCCTAATCCCAAACTGAAAGGTCCAGGTCCATTTTCTCCGACAAAATTCGTCTTGGGCTCCAATGACGACAAGCTCGAACGCGCTCAAGCACGCGCCGCCCGTGCTGCGGTCATCCGTCGTAAGCCCATCCCTGTTGCGCCTCCTCCATCTGAAGATCCTTGTCTTGACAAGGAGCAGATTCTCGAACTCTTCCAGAATTGCATCAAACTCGCCAGTGAAAAT : AAAATTAATCAGAAGAATACTTGGGAGCTAGGTCTAATTGATCATCTATGCGAGATAGTTAAAGTTGAACAAGAGAATGATTCCGAGACCAACTTCCAGAAG</gDNA_template>
            <first_frame> V  A  N  S  K  L  E  K  V  G  N  H  K  S  L  S  Q  S  E  R  Q  P  E  A  P  I  L  L  T  A  L  *  P  E  T  S  T  G  A  R  T  T  S  Q  V  H  F  S  *  R  V  S  L  L  D  L  *  I  D  D  C  N  G  G  N  H  K  P  *  S  Q  T  E  R  S  R  S  I  F  S  D  K  I  R  L  G  L  Q  *  R  Q  A  R  T  R  S  S  T  R  R  P  C  C  G  H  P  S  *  A  H  P  C  C  A  S  S  I  *  R  S  L  S  *  Q  G  A  D  S  R  T  L  P  E  L  H  Q  T  R  Q  *  K   : *  N  *  S  E  E  Y  L  G  A  R  S  N  *  S  S  M  R  D  S  *  S  *  T  R  E  *  F  R  D  Q  L  P  E  </first_frame>
            <second_frame>  S  Q  I  Q  N  W  K  R  W  E  I  T  N  H  F  P  N  P  N  G  N  Q  K  L  P  F  F  S  P  L  S  N  R  K  L  P  P  A  H  A  P  L  L  R  F  T  S  R  N  V  *  V  Y  *  I  Y  K  L  T  T  A  M  A  E  I  I  S  P  N  P  K  L  K  G  P  G  P  F  S  P  T  K  F  V  L  G  S  N  D  D  K  L  E  R  A  Q  A  R  A  A  R  A  A  V  I  R  R  K  P  I  P  V  A  P  P  P  S  E  D  P  C  L  D  K  E  Q  I  L  E  L  F  Q  N  C  I  K  L  A  S  E  N  :  K  I  N  Q  K  N  T  W  E  L  G  L  I  D  H  L  C  E  I  V  K  V  E  Q  E  N  D  S  E  T  N  F  Q  K </second_frame>
            <third_frame>   R  K  F  K  I  G  K  G  G  K  S  Q  I  T  F  P  I  R  T  A  T  R  S  S  H  S  S  H  R  S  L  T  G  N  F  H  R  R  T  H  H  F  S  G  S  L  L  V  T  C  K  S  T  R  S  I  N  *  R  L  Q  W  R  K  S  *  A  L  I  P  N  *  K  V  Q  V  H  F  L  R  Q  N  S  S  W  A  P  M  T  T  S  S  N  A  L  K  H  A  P  P  V  L  R  S  S  V  V  S  P  S  L  L  R  L  L  H  L  K  I  L  V  L  T  R  S  R  F  S  N  S  S  R  I  A  S  N  S  P  V  K  I :   K  L  I  R  R  I  L  G  S  *  V  *  L  I  I  Y  A  R  *  L  K  L  N  K  R  M  I  P  R  P  T  S  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0053G19.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13755" stop="14015"/>
                    <exon start="14125" stop="14226"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYKLTTAMAEIISPNPKLKGPGPFSPTKFVLGSNDDKLERAQARAARAAVIRRKPIPVAPPPSEDPCLDKEQILELFQNCIKLASENKINQKNTWELGLIDHLCEIVKVEQENDSETNFQK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="24946" PGL_stop="31427"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25007" e_stop="25651"/>
            <exon e_start="30175" e_stop="31427"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="0.993"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="25007" e_stop="25651" e_length="645"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="25652" i_stop="30174" i_length="4523"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="30175" e_stop="31427" e_length="1253"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25007" stop="25472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25056" stop="25646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25060" stop="25651"/>
              <exon start="30175" stop="30411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25061" stop="25639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25077" stop="25651"/>
              <exon start="30175" stop="30320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25077" stop="25651"/>
              <exon start="30175" stop="30220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25094" stop="25651"/>
              <exon start="30175" stop="31427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25094" stop="25581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25113" stop="25651"/>
              <exon start="30175" stop="30427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25115" stop="25651"/>
              <exon start="30175" stop="30504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25136" stop="25651"/>
              <exon start="30175" stop="30342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25136" stop="25651"/>
              <exon start="30175" stop="30218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25234" stop="25651"/>
              <exon start="30175" stop="30269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25243" stop="25651"/>
              <exon start="30175" stop="30320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25244" stop="25419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25246" stop="25651"/>
              <exon start="30175" stop="30320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25253" stop="25651"/>
              <exon start="30175" stop="31215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25258" stop="25651"/>
              <exon start="30175" stop="30260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25260" stop="25651"/>
              <exon start="30175" stop="30269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25398" stop="25651"/>
              <exon start="30175" stop="30686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25461" stop="25651"/>
              <exon start="30175" stop="30552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25461" stop="25651"/>
              <exon start="30175" stop="30475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25465" stop="25651"/>
              <exon start="30175" stop="30294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25552" stop="25651"/>
              <exon start="30175" stop="30586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30390" stop="31101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30394" stop="30935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30565" stop="31152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30671" stop="31204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30778" stop="31421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30987" stop="31360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30991" stop="31347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31010" stop="31341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31078" stop="31361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226175" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTACCACAACTGATATTGATAATGATATTCAGCTTACCACCCAACGCCCTCAACCTTGACTAGCCCTCCCTCAAACTCTCCTTTTTCACCAATCTCACTCTCCAAATAGTATTTTCTAGGTTTCATAGTGATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCGAAAAAAAAAAAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAG : ATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAAATTCCTCTTTAACTTCTTCTCCCTCACTATCCTCGGCGCTGATCCATCTGTCTCCCCAGAAATCGCCAATTCTGGCTACATCTTTCTTGATTCATGGCTAGCTATTCAATTAGCACCTACTGTCAGCATTGGTGTCCTTCAACCTCTTGAAGAAATTTTAGTCCATTCTTTTGCATACCCTTTTTTTCTTGTCAAAGGTAATTATGAAAAACTCGTTCAATTCGTCAAAAATGAAGCCAAGGAAGTTTTAAGCAGGGCACAAACAGAGTTTCAACTCACAGAACAAGAAGCCATTCATAACCTTTTGTTCATTCTTGGGTTCAATGCTTTTGGTGGCTTCTCCATTTTCTTGCCAACTCTTTTGGGAAATCTTGGAGATGAGAAAAACGCGGATATGCAAGAGAAACTGAGAAAAGAAGTGAGAGACAAAGTCGGCGTAAATCCAGAAAACTTGAGTTTTGAAAGTGTTAAAGAAATGGAACTTGTTCAGTCTTTTGTTTATGAAACACTTAGGCTTAGTCCACCAGTACCAAGTCAATATGCAAGAGCAAGAAAAGATTTTAAACTGAGTTCACATGATTCAGTTTACGAAATCAAGAAAGGGGAGCTTCTTTGTGGTTATCAGCCTTTAGTTATGAAAGATCCAAAGGTGTTTGATGAACCTGAAAAGTTTGTGTTGGAGAGATTTACAAAGGAAAAAGGGAAAGAATTGCTGAATTATTTGTTTTGGTCTAATGGTCCACAAACTGGGAGACCTACTGAATCAAACAAGCAATGTGCTGCTAAAGATATGGTTACTCTAACTGCTTCTTTGATTGTGGCTTACATTTTCCAAAAGTACGATTCTGTGAGTTTCTCATCTGGTTCACTCACATCTGTGAAAAAGGCTAGTTGAGTTCTGGGCTGTGTAGCTGCAAAATCTAAGCTTGCTAGACATGTTGATCTTAAGTCTCGGTGGCTGGCTTTTCCTTCCTCCCCCTATTGTGTAATATAATTTCACAAATAAAAGTTCAACATGAGTGTACTTATTTTCTGTTCTGACTTATGACTATTGTCTATCCTCTTACAAATTAAGTTGGAACATGAATCTAAGTTATAATTACAGAA</gDNA_template>
            <first_frame> V  P  Q  L  I  L  I  M  I  F  S  L  P  P  N  A  L  N  L  D  *  P  S  L  K  L  S  F  F  T  N  L  T  L  Q  I  V  F  S  R  F  H  S  D  K  H  I  H  T  R  A  M  K  F  L  K  Q  T  L  Q  *  T  H  G  V  F  I  S  L  K  Q  S  Y  P  L  S  R  S  K  K  K  K  I  P  I  M  N  S  A  P  L  S  T  P  A  P  V  T  L  P  V  R  S  I  P  G  S  Y  G  L  P  L  V  G  P  I  A  D  R  L  D  Y  F  W  F  Q  K  P  E  N  F  F  T  K  R  M  E  K  H  K  S  T  V  F  R  T  N  V  P  P  C  F  P  F  F  G  S  V  N  P  N  V  V  A  V  L  D  V  K  S  F  S  H  L  F  D  M  E  I  V  E  K  A  N  V  L  V  G  D  F  M  P  S  V  V  Y  T  G  D  M  R  V  C  A  Y  L  D  T  S  E  P  K  H  A  Q  :  I  K  N  F  S  Q  D  I  L  K  R  G  S  K  T  W  V  P  T  L  L  K  E  L  D  T  M  F  T  T  F  E  A  D  L  S  K  S  N  T  A  S  L  L  P  A  L  Q  K  F  L  F  N  F  F  S  L  T  I  L  G  A  D  P  S  V  S  P  E  I  A  N  S  G  Y  I  F  L  D  S  W  L  A  I  Q  L  A  P  T  V  S  I  G  V  L  Q  P  L  E  E  I  L  V  H  S  F  A  Y  P  F  F  L  V  K  G  N  Y  E  K  L  V  Q  F  V  K  N  E  A  K  E  V  L  S  R  A  Q  T  E  F  Q  L  T  E  Q  E  A  I  H  N  L  L  F  I  L  G  F  N  A  F  G  G  F  S  I  F  L  P  T  L  L  G  N  L  G  D  E  K  N  A  D  M  Q  E  K  L  R  K  E  V  R  D  K  V  G  V  N  P  E  N  L  S  F  E  S  V  K  E  M  E  L  V  Q  S  F  V  Y  E  T  L  R  L  S  P  P  V  P  S  Q  Y  A  R  A  R  K  D  F  K  L  S  S  H  D  S  V  Y  E  I  K  K  G  E  L  L  C  G  Y  Q  P  L  V  M  K  D  P  K  V  F  D  E  P  E  K  F  V  L  E  R  F  T  K  E  K  G  K  E  L  L  N  Y  L  F  W  S  N  G  P  Q  T  G  R  P  T  E  S  N  K  Q  C  A  A  K  D  M  V  T  L  T  A  S  L  I  V  A  Y  I  F  Q  K  Y  D  S  V  S  F  S  S  G  S  L  T  S  V  K  K  A  S  *  V  L  G  C  V  A  A  K  S  K  L  A  R  H  V  D  L  K  S  R  W  L  A  F  P  S  S  P  Y  C  V  I  *  F  H  K  *  K  F  N  M  S  V  L  I  F  C  S  D  L  *  L  L  S  I  L  L  Q  I  K  L  E  H  E  S  K  L  *  L  Q   </first_frame>
            <second_frame>  Y  H  N  *  Y  *  *  *  Y  S  A  Y  H  P  T  P  S  T  L  T  S  P  P  S  N  S  P  F  S  P  I  S  L  S  K  *  Y  F  L  G  F  I  V  I  S  T  S  T  Q  E  L  *  N  F  *  N  K  R  Y  N  R  H  T  A  Y  L  F  P  S  S  N  R  I  P  L  A  D  R  K  K  K  R  Y  R  *  *  I  L  L  L  Y  Q  L  R  R  R  L  L  C  P  S  V  R  F  R  A  A  T  D  C  R  *  *  G  Q  S  R  I  D  *  T  T  S  G  S  K  N  R  K  T  S  S  P  R  E  W  K  S  T  R  A  R  F  S  E  R  T  C  R  R  V  F  R  F  S  V  V  *  I  Q  M  W  W  R  F  *  M  *  N  R  F  R  I  C  L  I  W  R  L  *  R  K  L  M  C  L  L  G  I  S  C  P  V  L  F  I  L  E  I  C  V  F  V  L  I  S  I  L  L  N  L  N  M  P  R :   L  R  I  F  H  R  I  F  *  K  E  A  Q  K  H  G  C  L  H  Y  L  K  S  L  I  Q  C  L  Q  L  L  K  Q  I  F  Q  N  P  I  Q  L  L  F  F  L  H  S  K  N  S  S  L  T  S  S  P  S  L  S  S  A  L  I  H  L  S  P  Q  K  S  P  I  L  A  T  S  F  L  I  H  G  *  L  F  N  *  H  L  L  S  A  L  V  S  F  N  L  L  K  K  F  *  S  I  L  L  H  T  L  F  F  L  S  K  V  I  M  K  N  S  F  N  S  S  K  M  K  P  R  K  F  *  A  G  H  K  Q  S  F  N  S  Q  N  K  K  P  F  I  T  F  C  S  F  L  G  S  M  L  L  V  A  S  P  F  S  C  Q  L  F  W  E  I  L  E  M  R  K  T  R  I  C  K  R  N  *  E  K  K  *  E  T  K  S  A  *  I  Q  K  T  *  V  L  K  V  L  K  K  W  N  L  F  S  L  L  F  M  K  H  L  G  L  V  H  Q  Y  Q  V  N  M  Q  E  Q  E  K  I  L  N  *  V  H  M  I  Q  F  T  K  S  R  K  G  S  F  F  V  V  I  S  L  *  L  *  K  I  Q  R  C  L  M  N  L  K  S  L  C  W  R  D  L  Q  R  K  K  G  K  N  C  *  I  I  C  F  G  L  M  V  H  K  L  G  D  L  L  N  Q  T  S  N  V  L  L  K  I  W  L  L  *  L  L  L  *  L  W  L  T  F  S  K  S  T  I  L  *  V  S  H  L  V  H  S  H  L  *  K  R  L  V  E  F  W  A  V  *  L  Q  N  L  S  L  L  D  M  L  I  L  S  L  G  G  W  L  F  L  P  P  P  I  V  *  Y  N  F  T  N  K  S  S  T  *  V  Y  L  F  S  V  L  T  Y  D  Y  C  L  S  S  Y  K  L  S  W  N  M  N  L  S  Y  N  Y  R  </second_frame>
            <third_frame>   T  T  T  D  I  D  N  D  I  Q  L  T  T  Q  R  P  Q  P  *  L  A  L  P  Q  T  L  L  F  H  Q  S  H  S  P  N  S  I  F  *  V  S  *  *  *  A  H  P  H  K  S  Y  E  I  S  E  T  N  V  T  I  D  T  R  R  I  Y  F  P  Q  A  I  V  S  P  *  Q  I  E  K  K  K  D  T  D  N  E  F  C  S  S  I  N  S  G  A  G  Y  S  A  R  P  F  D  S  G  Q  L  R  I  A  V  S  R  A  N  R  G  S  I  R  L  L  L  V  P  K  T  G  K  L  L  H  Q  E  N  G  K  A  Q  E  H  G  F  Q  N  E  R  A  A  V  F  S  V  F  R  *  C  E  S  K  C  G  G  G  F  R  C  E  I  V  F  A  S  V  *  Y  G  D  C  R  E  S  *  C  A  C  W  G  F  H  A  Q  C  C  L  Y  W  R  Y  A  C  L  C  L  S  R  Y  F  *  T  *  T  C  P   : D  *  E  F  F  T  G  Y  S  K  K  R  L  K  N  M  G  A  Y  T  T  *  R  A  *  Y  N  V  Y  N  F  *  S  R  S  F  K  I  Q  Y  S  F  S  S  S  C  T  P  K  I  P  L  *  L  L  L  P  H  Y  P  R  R  *  S  I  C  L  P  R  N  R  Q  F  W  L  H  L  S  *  F  M  A  S  Y  S  I  S  T  Y  C  Q  H  W  C  P  S  T  S  *  R  N  F  S  P  F  F  C  I  P  F  F  S  C  Q  R  *  L  *  K  T  R  S  I  R  Q  K  *  S  Q  G  S  F  K  Q  G  T  N  R  V  S  T  H  R  T  R  S  H  S  *  P  F  V  H  S  W  V  Q  C  F  W  W  L  L  H  F  L  A  N  S  F  G  K  S  W  R  *  E  K  R  G  Y  A  R  E  T  E  K  R  S  E  R  Q  S  R  R  K  S  R  K  L  E  F  *  K  C  *  R  N  G  T  C  S  V  F  C  L  *  N  T  *  A  *  S  T  S  T  K  S  I  C  K  S  K  K  R  F  *  T  E  F  T  *  F  S  L  R  N  Q  E  R  G  A  S  L  W  L  S  A  F  S  Y  E  R  S  K  G  V  *  *  T  *  K  V  C  V  G  E  I  Y  K  G  K  R  E  R  I  A  E  L  F  V  L  V  *  W  S  T  N  W  E  T  Y  *  I  K  Q  A  M  C  C  *  R  Y  G  Y  S  N  C  F  F  D  C  G  L  H  F  P  K  V  R  F  C  E  F  L  I  W  F  T  H  I  C  E  K  G  *  L  S  S  G  L  C  S  C  K  I  *  A  C  *  T  C  *  S  *  V  S  V  A  G  F  S  F  L  P  L  L  C  N  I  I  S  Q  I  K  V  Q  H  E  C  T  Y  F  L  F  *  L  M  T  I  V  Y  P  L  T  N  *  V  G  T  *  I  *  V  I  I  T  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0053G19.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25190" stop="25651"/>
                    <exon start="30175" stop="31215"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1500</number_coding_nucleotides>
                  <number_encoded_amino_acids>500</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THGVFISLKQSYPLSRSKKKKIPIMNSAPLSTPAPVTLPVRSIPGSYGLPLVGPIADRLDYFWFQKPENFFTKRMEKHKSTVFRTNVPPCFPFFGSVNPNVVAVLDVKSFSHLFDMEIVEKANVLVGDFMPSVVYTGDMRVCAYLDTSEPKHAQIKNFSQDILKRGSKTWVPTLLKELDTMFTTFEADLSKSNTASLLPALQKFLFNFFSLTILGADPSVSPEIANSGYIFLDSWLAIQLAPTVSIGVLQPLEEILVHSFAYPFFLVKGNYEKLVQFVKNEAKEVLSRAQTEFQLTEQEAIHNLLFILGFNAFGGFSIFLPTLLGNLGDEKNADMQEKLRKEVRDKVGVNPENLSFESVKEMELVQSFVYETLRLSPPVPSQYARARKDFKLSSHDSVYEIKKGELLCGYQPLVMKDPKVFDEPEKFVLERFTKEKGKELLNYLFWSNGPQTGRPTESNKQCAAKDMVTLTASLIVAYIFQKYDSVSFSSGSLTSVKKAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24946" e_stop="24960"/>
            <exon e_start="25039" e_stop="25651"/>
            <exon e_start="30175" e_stop="31427"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.383" acc_prob="0.961" e_score="0.800"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="0.993"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.800">
            <gDNA_exon_boundary e_start="24946" e_stop="24960" e_length="15"/>
          </exon>
          <intron i_serial="1" don_prob="0.383" acc_prob="0.961">
            <gDNA_intron_boundary i_start="24961" i_stop="25038" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="25039" e_stop="25651" e_length="613"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="25652" i_stop="30174" i_length="4523"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="30175" e_stop="31427" e_length="1253"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24946" stop="24960"/>
              <exon start="25039" stop="25651"/>
              <exon start="30175" stop="31366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25056" stop="25646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25060" stop="25651"/>
              <exon start="30175" stop="30411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25061" stop="25639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25077" stop="25651"/>
              <exon start="30175" stop="30320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25077" stop="25651"/>
              <exon start="30175" stop="30220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25094" stop="25651"/>
              <exon start="30175" stop="31427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25094" stop="25581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25113" stop="25651"/>
              <exon start="30175" stop="30427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25115" stop="25651"/>
              <exon start="30175" stop="30504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25136" stop="25651"/>
              <exon start="30175" stop="30342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25136" stop="25651"/>
              <exon start="30175" stop="30218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25234" stop="25651"/>
              <exon start="30175" stop="30269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25243" stop="25651"/>
              <exon start="30175" stop="30320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25244" stop="25419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25246" stop="25651"/>
              <exon start="30175" stop="30320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25253" stop="25651"/>
              <exon start="30175" stop="31215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25258" stop="25651"/>
              <exon start="30175" stop="30260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25260" stop="25651"/>
              <exon start="30175" stop="30269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25398" stop="25651"/>
              <exon start="30175" stop="30686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25461" stop="25651"/>
              <exon start="30175" stop="30552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25461" stop="25651"/>
              <exon start="30175" stop="30475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25465" stop="25651"/>
              <exon start="30175" stop="30294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25552" stop="25651"/>
              <exon start="30175" stop="30586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30390" stop="31101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30394" stop="30935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30565" stop="31152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30671" stop="31204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30778" stop="31421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30987" stop="31360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30991" stop="31347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31010" stop="31341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31078" stop="31361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226175" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTATATTCA : CTTACCACCCAACGCCCTCAACCTTGACTAGCCCTCCCTCAAACTCTCCTTTTTCACCAATCTCACTCTCCAAATAGTATTTTCTAGGTTTCATAGTGATAAGCACATCCACACAAGAGCTATGAAATTTCTGAAACAAACGTTACAATAGACACACGGCGTATTTATTTCCCTCAAGCAATCGTATCCCCTTAGCAGATCGAAAAAAAAAAAGATACCGATAATGAATTCTGCTCCTCTATCAACTCCGGCGCCGGTTACTCTGCCCGTCCGTTCGATTCCGGGCAGCTACGGATTGCCGTTAGTAGGGCCAATCGCGGATCGATTAGACTACTTCTGGTTCCAAAAACCGGAAAACTTCTTCACCAAGAGAATGGAAAAGCACAAGAGCACGGTTTTCAGAACGAACGTGCCGCCGTGTTTTCCGTTTTTCGGTAGTGTGAATCCAAATGTGGTGGCGGTTTTAGATGTGAAATCGTTTTCGCATCTGTTTGATATGGAGATTGTAGAGAAAGCTAATGTGCTTGTTGGGGATTTCATGCCCAGTGTTGTTTATACTGGAGATATGCGTGTTTGTGCTTATCTCGATACTTCTGAACCTAAACATGCCCAG : ATTAAGAATTTTTCACAGGATATTCTAAAAAGAGGCTCAAAAACATGGGTGCCTACACTACTTAAAGAGCTTGATACAATGTTTACAACTTTTGAAGCAGATCTTTCAAAATCCAATACAGCTTCTCTTCTTCCTGCACTCCAAAAATTCCTCTTTAACTTCTTCTCCCTCACTATCCTCGGCGCTGATCCATCTGTCTCCCCAGAAATCGCCAATTCTGGCTACATCTTTCTTGATTCATGGCTAGCTATTCAATTAGCACCTACTGTCAGCATTGGTGTCCTTCAACCTCTTGAAGAAATTTTAGTCCATTCTTTTGCATACCCTTTTTTTCTTGTCAAAGGTAATTATGAAAAACTCGTTCAATTCGTCAAAAATGAAGCCAAGGAAGTTTTAAGCAGGGCACAAACAGAGTTTCAACTCACAGAACAAGAAGCCATTCATAACCTTTTGTTCATTCTTGGGTTCAATGCTTTTGGTGGCTTCTCCATTTTCTTGCCAACTCTTTTGGGAAATCTTGGAGATGAGAAAAACGCGGATATGCAAGAGAAACTGAGAAAAGAAGTGAGAGACAAAGTCGGCGTAAATCCAGAAAACTTGAGTTTTGAAAGTGTTAAAGAAATGGAACTTGTTCAGTCTTTTGTTTATGAAACACTTAGGCTTAGTCCACCAGTACCAAGTCAATATGCAAGAGCAAGAAAAGATTTTAAACTGAGTTCACATGATTCAGTTTACGAAATCAAGAAAGGGGAGCTTCTTTGTGGTTATCAGCCTTTAGTTATGAAAGATCCAAAGGTGTTTGATGAACCTGAAAAGTTTGTGTTGGAGAGATTTACAAAGGAAAAAGGGAAAGAATTGCTGAATTATTTGTTTTGGTCTAATGGTCCACAAACTGGGAGACCTACTGAATCAAACAAGCAATGTGCTGCTAAAGATATGGTTACTCTAACTGCTTCTTTGATTGTGGCTTACATTTTCCAAAAGTACGATTCTGTGAGTTTCTCATCTGGTTCACTCACATCTGTGAAAAAGGCTAGTTGAGTTCTGGGCTGTGTAGCTGCAAAATCTAAGCTTGCTAGACATGTTGATCTTAAGTCTCGGTGGCTGGCTTTTCCTTCCTCCCCCTATTGTGTAATATAATTTCACAAATAAAAGTTCAACATGAGTGTACTTATTTTCTGTTCTGACTTATGACTATTGTCTATCCTCTTACAAATTAAGTTGGAACATGAATCTAAGTTATAATTACAGAA</gDNA_template>
            <first_frame> F  F  L  Y  S  :  L  T  T  Q  R  P  Q  P  *  L  A  L  P  Q  T  L  L  F  H  Q  S  H  S  P  N  S  I  F  *  V  S  *  *  *  A  H  P  H  K  S  Y  E  I  S  E  T  N  V  T  I  D  T  R  R  I  Y  F  P  Q  A  I  V  S  P  *  Q  I  E  K  K  K  D  T  D  N  E  F  C  S  S  I  N  S  G  A  G  Y  S  A  R  P  F  D  S  G  Q  L  R  I  A  V  S  R  A  N  R  G  S  I  R  L  L  L  V  P  K  T  G  K  L  L  H  Q  E  N  G  K  A  Q  E  H  G  F  Q  N  E  R  A  A  V  F  S  V  F  R  *  C  E  S  K  C  G  G  G  F  R  C  E  I  V  F  A  S  V  *  Y  G  D  C  R  E  S  *  C  A  C  W  G  F  H  A  Q  C  C  L  Y  W  R  Y  A  C  L  C  L  S  R  Y  F  *  T  *  T  C  P   : D  *  E  F  F  T  G  Y  S  K  K  R  L  K  N  M  G  A  Y  T  T  *  R  A  *  Y  N  V  Y  N  F  *  S  R  S  F  K  I  Q  Y  S  F  S  S  S  C  T  P  K  I  P  L  *  L  L  L  P  H  Y  P  R  R  *  S  I  C  L  P  R  N  R  Q  F  W  L  H  L  S  *  F  M  A  S  Y  S  I  S  T  Y  C  Q  H  W  C  P  S  T  S  *  R  N  F  S  P  F  F  C  I  P  F  F  S  C  Q  R  *  L  *  K  T  R  S  I  R  Q  K  *  S  Q  G  S  F  K  Q  G  T  N  R  V  S  T  H  R  T  R  S  H  S  *  P  F  V  H  S  W  V  Q  C  F  W  W  L  L  H  F  L  A  N  S  F  G  K  S  W  R  *  E  K  R  G  Y  A  R  E  T  E  K  R  S  E  R  Q  S  R  R  K  S  R  K  L  E  F  *  K  C  *  R  N  G  T  C  S  V  F  C  L  *  N  T  *  A  *  S  T  S  T  K  S  I  C  K  S  K  K  R  F  *  T  E  F  T  *  F  S  L  R  N  Q  E  R  G  A  S  L  W  L  S  A  F  S  Y  E  R  S  K  G  V  *  *  T  *  K  V  C  V  G  E  I  Y  K  G  K  R  E  R  I  A  E  L  F  V  L  V  *  W  S  T  N  W  E  T  Y  *  I  K  Q  A  M  C  C  *  R  Y  G  Y  S  N  C  F  F  D  C  G  L  H  F  P  K  V  R  F  C  E  F  L  I  W  F  T  H  I  C  E  K  G  *  L  S  S  G  L  C  S  C  K  I  *  A  C  *  T  C  *  S  *  V  S  V  A  G  F  S  F  L  P  L  L  C  N  I  I  S  Q  I  K  V  Q  H  E  C  T  Y  F  L  F  *  L  M  T  I  V  Y  P  L  T  N  *  V  G  T  *  I  *  V  I  I  T  E </first_frame>
            <second_frame>  F  F  Y  I  H :   L  P  P  N  A  L  N  L  D  *  P  S  L  K  L  S  F  F  T  N  L  T  L  Q  I  V  F  S  R  F  H  S  D  K  H  I  H  T  R  A  M  K  F  L  K  Q  T  L  Q  *  T  H  G  V  F  I  S  L  K  Q  S  Y  P  L  S  R  S  K  K  K  K  I  P  I  M  N  S  A  P  L  S  T  P  A  P  V  T  L  P  V  R  S  I  P  G  S  Y  G  L  P  L  V  G  P  I  A  D  R  L  D  Y  F  W  F  Q  K  P  E  N  F  F  T  K  R  M  E  K  H  K  S  T  V  F  R  T  N  V  P  P  C  F  P  F  F  G  S  V  N  P  N  V  V  A  V  L  D  V  K  S  F  S  H  L  F  D  M  E  I  V  E  K  A  N  V  L  V  G  D  F  M  P  S  V  V  Y  T  G  D  M  R  V  C  A  Y  L  D  T  S  E  P  K  H  A  Q  :  I  K  N  F  S  Q  D  I  L  K  R  G  S  K  T  W  V  P  T  L  L  K  E  L  D  T  M  F  T  T  F  E  A  D  L  S  K  S  N  T  A  S  L  L  P  A  L  Q  K  F  L  F  N  F  F  S  L  T  I  L  G  A  D  P  S  V  S  P  E  I  A  N  S  G  Y  I  F  L  D  S  W  L  A  I  Q  L  A  P  T  V  S  I  G  V  L  Q  P  L  E  E  I  L  V  H  S  F  A  Y  P  F  F  L  V  K  G  N  Y  E  K  L  V  Q  F  V  K  N  E  A  K  E  V  L  S  R  A  Q  T  E  F  Q  L  T  E  Q  E  A  I  H  N  L  L  F  I  L  G  F  N  A  F  G  G  F  S  I  F  L  P  T  L  L  G  N  L  G  D  E  K  N  A  D  M  Q  E  K  L  R  K  E  V  R  D  K  V  G  V  N  P  E  N  L  S  F  E  S  V  K  E  M  E  L  V  Q  S  F  V  Y  E  T  L  R  L  S  P  P  V  P  S  Q  Y  A  R  A  R  K  D  F  K  L  S  S  H  D  S  V  Y  E  I  K  K  G  E  L  L  C  G  Y  Q  P  L  V  M  K  D  P  K  V  F  D  E  P  E  K  F  V  L  E  R  F  T  K  E  K  G  K  E  L  L  N  Y  L  F  W  S  N  G  P  Q  T  G  R  P  T  E  S  N  K  Q  C  A  A  K  D  M  V  T  L  T  A  S  L  I  V  A  Y  I  F  Q  K  Y  D  S  V  S  F  S  S  G  S  L  T  S  V  K  K  A  S  *  V  L  G  C  V  A  A  K  S  K  L  A  R  H  V  D  L  K  S  R  W  L  A  F  P  S  S  P  Y  C  V  I  *  F  H  K  *  K  F  N  M  S  V  L  I  F  C  S  D  L  *  L  L  S  I  L  L  Q  I  K  L  E  H  E  S  K  L  *  L  Q   </second_frame>
            <third_frame>   F  F  I  F   : T  Y  H  P  T  P  S  T  L  T  S  P  P  S  N  S  P  F  S  P  I  S  L  S  K  *  Y  F  L  G  F  I  V  I  S  T  S  T  Q  E  L  *  N  F  *  N  K  R  Y  N  R  H  T  A  Y  L  F  P  S  S  N  R  I  P  L  A  D  R  K  K  K  R  Y  R  *  *  I  L  L  L  Y  Q  L  R  R  R  L  L  C  P  S  V  R  F  R  A  A  T  D  C  R  *  *  G  Q  S  R  I  D  *  T  T  S  G  S  K  N  R  K  T  S  S  P  R  E  W  K  S  T  R  A  R  F  S  E  R  T  C  R  R  V  F  R  F  S  V  V  *  I  Q  M  W  W  R  F  *  M  *  N  R  F  R  I  C  L  I  W  R  L  *  R  K  L  M  C  L  L  G  I  S  C  P  V  L  F  I  L  E  I  C  V  F  V  L  I  S  I  L  L  N  L  N  M  P  R :   L  R  I  F  H  R  I  F  *  K  E  A  Q  K  H  G  C  L  H  Y  L  K  S  L  I  Q  C  L  Q  L  L  K  Q  I  F  Q  N  P  I  Q  L  L  F  F  L  H  S  K  N  S  S  L  T  S  S  P  S  L  S  S  A  L  I  H  L  S  P  Q  K  S  P  I  L  A  T  S  F  L  I  H  G  *  L  F  N  *  H  L  L  S  A  L  V  S  F  N  L  L  K  K  F  *  S  I  L  L  H  T  L  F  F  L  S  K  V  I  M  K  N  S  F  N  S  S  K  M  K  P  R  K  F  *  A  G  H  K  Q  S  F  N  S  Q  N  K  K  P  F  I  T  F  C  S  F  L  G  S  M  L  L  V  A  S  P  F  S  C  Q  L  F  W  E  I  L  E  M  R  K  T  R  I  C  K  R  N  *  E  K  K  *  E  T  K  S  A  *  I  Q  K  T  *  V  L  K  V  L  K  K  W  N  L  F  S  L  L  F  M  K  H  L  G  L  V  H  Q  Y  Q  V  N  M  Q  E  Q  E  K  I  L  N  *  V  H  M  I  Q  F  T  K  S  R  K  G  S  F  F  V  V  I  S  L  *  L  *  K  I  Q  R  C  L  M  N  L  K  S  L  C  W  R  D  L  Q  R  K  K  G  K  N  C  *  I  I  C  F  G  L  M  V  H  K  L  G  D  L  L  N  Q  T  S  N  V  L  L  K  I  W  L  L  *  L  L  L  *  L  W  L  T  F  S  K  S  T  I  L  *  V  S  H  L  V  H  S  H  L  *  K  R  L  V  E  F  W  A  V  *  L  Q  N  L  S  L  L  D  M  L  I  L  S  L  G  G  W  L  F  L  P  P  P  I  V  *  Y  N  F  T  N  K  S  S  T  *  V  Y  L  F  S  V  L  T  Y  D  Y  C  L  S  S  Y  K  L  S  W  N  M  N  L  S  Y  N  Y  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0053G19.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25190" stop="25651"/>
                    <exon start="30175" stop="31215"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1500</number_coding_nucleotides>
                  <number_encoded_amino_acids>500</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THGVFISLKQSYPLSRSKKKKIPIMNSAPLSTPAPVTLPVRSIPGSYGLPLVGPIADRLDYFWFQKPENFFTKRMEKHKSTVFRTNVPPCFPFFGSVNPNVVAVLDVKSFSHLFDMEIVEKANVLVGDFMPSVVYTGDMRVCAYLDTSEPKHAQIKNFSQDILKRGSKTWVPTLLKELDTMFTTFEADLSKSNTASLLPALQKFLFNFFSLTILGADPSVSPEIANSGYIFLDSWLAIQLAPTVSIGVLQPLEEILVHSFAYPFFLVKGNYEKLVQFVKNEAKEVLSRAQTEFQLTEQEAIHNLLFILGFNAFGGFSIFLPTLLGNLGDEKNADMQEKLRKEVRDKVGVNPENLSFESVKEMELVQSFVYETLRLSPPVPSQYARARKDFKLSSHDSVYEIKKGELLCGYQPLVMKDPKVFDEPEKFVLERFTKEKGKELLNYLFWSNGPQTGRPTESNKQCAAKDMVTLTASLIVAYIFQKYDSVSFSSGSLTSVKKAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="40142" PGL_stop="35294"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40142" e_stop="40094"/>
            <exon e_start="39974" e_stop="39832"/>
            <exon e_start="39437" e_stop="39390"/>
            <exon e_start="35641" e_stop="35294"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40142" e_stop="40094" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="40093" i_stop="39975" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39974" e_stop="39832" e_length="143"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39831" i_stop="39438" i_length="394"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39437" e_stop="39390" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39389" i_stop="35642" i_length="3748"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35641" e_stop="35294" e_length="348"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40142" stop="40094"/>
              <exon start="39974" stop="39832"/>
              <exon start="39437" stop="39390"/>
              <exon start="35641" stop="35342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40141" stop="40094"/>
              <exon start="39974" stop="39832"/>
              <exon start="39437" stop="39390"/>
              <exon start="35641" stop="35327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40110" stop="40094"/>
              <exon start="39974" stop="39832"/>
              <exon start="39437" stop="39390"/>
              <exon start="35641" stop="35315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40109" stop="40094"/>
              <exon start="39974" stop="39832"/>
              <exon start="39437" stop="39390"/>
              <exon start="35641" stop="35315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40108" stop="40094"/>
              <exon start="39974" stop="39832"/>
              <exon start="39437" stop="39390"/>
              <exon start="35641" stop="35341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40108" stop="40094"/>
              <exon start="39974" stop="39832"/>
              <exon start="39437" stop="39390"/>
              <exon start="35641" stop="35385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40102" stop="40094"/>
              <exon start="39974" stop="39832"/>
              <exon start="39437" stop="39390"/>
              <exon start="35641" stop="35294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39972" stop="39832"/>
              <exon start="39437" stop="39390"/>
              <exon start="35641" stop="35300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39972" stop="39832"/>
              <exon start="39437" stop="39390"/>
              <exon start="35641" stop="35301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39972" stop="39832"/>
              <exon start="39437" stop="39390"/>
              <exon start="35641" stop="35304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320750" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAATCCAACTTCCGATCCAGCTTCTCTCTCTGTTTCTCTCCATAACT : AGAATAAGAGGCATCTGAGAGATTGTTGGTTAGATCCATACCACAATGGGATTCCTGGTGACAACTCTAATTTTTGTTGCAATTGGTGTTATTGCATCTCTCTGCGCCAGAATCTGCTGCAATAGAGGGCCTTCTACTAATCT : GTTACACCTAACATTGATTATCACGGCGACAGTGTGCTGTTGGATGAT : GTGGGCGATTGTATATCTTGCACAGCTGAAACCACTCATCGTTCCAGTTTTGAGTGAAGGGGAGTGAGTGCATTGTACGTCAAATTTTGTGTTGATAGTTACTGGAGATTGCTGGACCCTAAGTATTCTTCTCTCAGGCTCTGTAAACTTTTCATCTGCTGCGAATAACTTGATAATTTAATTTGTATATTGTTCACCTCTTATAAAATGGTTCTTTATGAACCACCATTATAATATCCGCAGTCAATTCTGGGCTGAAGGTGAGGACTGTATGTATTTTGGATTGGACTCTGAGTTGGATCAAGGATGATAAATAATCAAATGGCTGTATGTTCTTGCATTGTTTTT</gDNA_template>
            <first_frame> L  N  P  T  S  D  P  A  S  L  S  V  S  L  H  N   : *  N  K  R  H  L  R  D  C  W  L  D  P  Y  H  N  G  I  P  G  D  N  S  N  F  C  C  N  W  C  Y  C  I  S  L  R  Q  N  L  L  Q  *  R  A  F  Y  *  S  :  V  T  P  N  I  D  Y  H  G  D  S  V  L  L  D  D  :  V  G  D  C  I  S  C  T  A  E  T  T  H  R  S  S  F  E  *  R  G  V  S  A  L  Y  V  K  F  C  V  D  S  Y  W  R  L  L  D  P  K  Y  S  S  L  R  L  C  K  L  F  I  C  C  E  *  L  D  N  L  I  C  I  L  F  T  S  Y  K  M  V  L  Y  E  P  P  L  *  Y  P  Q  S  I  L  G  *  R  *  G  L  Y  V  F  W  I  G  L  *  V  G  S  R  M  I  N  N  Q  M  A  V  C  S  C  I  V  F </first_frame>
            <second_frame>  S  I  Q  L  P  I  Q  L  L  S  L  F  L  S  I  T  :  R  I  R  G  I  *  E  I  V  G  *  I  H  T  T  M  G  F  L  V  T  T  L  I  F  V  A  I  G  V  I  A  S  L  C  A  R  I  C  C  N  R  G  P  S  T  N  L :   L  H  L  T  L  I  I  T  A  T  V  C  C  W  M  M :   W  A  I  V  Y  L  A  Q  L  K  P  L  I  V  P  V  L  S  E  G  E  *  V  H  C  T  S  N  F  V  L  I  V  T  G  D  C  W  T  L  S  I  L  L  S  G  S  V  N  F  S  S  A  A  N  N  L  I  I  *  F  V  Y  C  S  P  L  I  K  W  F  F  M  N  H  H  Y  N  I  R  S  Q  F  W  A  E  G  E  D  C  M  Y  F  G  L  D  S  E  L  D  Q  G  *  *  I  I  K  W  L  Y  V  L  A  L  F   </second_frame>
            <third_frame>   Q  S  N  F  R  S  S  F  S  L  C  F  S  P  *  L :   E  *  E  A  S  E  R  L  L  V  R  S  I  P  Q  W  D  S  W  *  Q  L  *  F  L  L  Q  L  V  L  L  H  L  S  A  P  E  S  A  A  I  E  G  L  L  L  I   : C  Y  T  *  H  *  L  S  R  R  Q  C  A  V  G  *   : C  G  R  L  Y  I  L  H  S  *  N  H  S  S  F  Q  F  *  V  K  G  S  E  C  I  V  R  Q  I  L  C  *  *  L  L  E  I  A  G  P  *  V  F  F  S  Q  A  L  *  T  F  H  L  L  R  I  T  *  *  F  N  L  Y  I  V  H  L  L  *  N  G  S  L  *  T  T  I  I  I  S  A  V  N  S  G  L  K  V  R  T  V  C  I  L  D  W  T  L  S  W  I  K  D  D  K  *  S  N  G  C  M  F  L  H  C  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0053G19.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39941" stop="39832"/>
                    <exon start="39437" stop="39390"/>
                    <exon start="35641" stop="35575"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHTTMGFLVTTLIFVAIGVIASLCARICCNRGPSTNLLHLTLIITATVCCWMMWAIVYLAQLKPLIVPVLSEGE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="51398" PGL_stop="41467"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
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            <exon e_start="42061" e_stop="41893"/>
            <exon e_start="41772" e_stop="41467"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.564" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.876" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.714" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51398" e_stop="51310" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="51309" i_stop="50342" i_length="968"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50341" e_stop="49174" e_length="1168"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.996">
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          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49095" e_stop="48901" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.980">
            <gDNA_intron_boundary i_start="48900" i_stop="47592" i_length="1309"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47591" e_stop="47511" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.994">
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          </intron>
          <exon e_serial="5" e_score="1.000">
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          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.905">
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          </intron>
          <exon e_serial="6" e_score="1.000">
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          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.989">
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          </intron>
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          </exon>
          <intron i_serial="7" don_prob="0.979" acc_prob="0.988">
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          </intron>
          <exon e_serial="8" e_score="1.000">
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          </exon>
          <intron i_serial="8" don_prob="0.971" acc_prob="0.878">
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          </exon>
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          </exon>
          <intron i_serial="10" don_prob="0.876" acc_prob="0.998">
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          </intron>
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          </exon>
          <intron i_serial="11" don_prob="0.910" acc_prob="0.996">
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          </intron>
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          </exon>
          <intron i_serial="12" don_prob="1.000" acc_prob="0.999">
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          </intron>
          <exon e_serial="13" e_score="1.000">
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          </exon>
          <intron i_serial="13" don_prob="0.964" acc_prob="0.995">
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          </intron>
          <exon e_serial="14" e_score="1.000">
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          </exon>
          <intron i_serial="14" don_prob="0.714" acc_prob="0.996">
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          </intron>
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          </exon>
          <intron i_serial="15" don_prob="0.996" acc_prob="0.974">
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          </intron>
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            <gDNA_exon_boundary e_start="41772" e_stop="41467" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334724" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E269884" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746938" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E340346" strand="+"/>
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            <referenceDNA id="SGN-E369650" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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              <exon start="51348" stop="51310"/>
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            <referenceDNA id="SGN-E321413" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51348" stop="51310"/>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E231941" strand="+"/>
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        </supporting_evidence>
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          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATGACCACCACTCTTCCTCGCCTACGAACTTCCTCATCCCCATTCTCCTCCTCCTTCCGATCTCTTTCTCCGGCCAAATTCATCTCC : ATAAAGGAGAACATTATATGACAGTATAGCATAGAGAAAGATCATGGCTGTAGAGGCTTTTGCCAAAACAAATTTGATGGAAGATATGGATGATGACGATGACATGCCTTTAGTTTTCAAACGAAGTAGTACCACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGAAGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCATGCCAAGAAAGTGCTTTGTACTTCAACATCAGTTCAGAAGTCTAGACCTCCCAAAAAAGAGGATTCAGATGATGAAACTCCCTTAGCATCAAGGTTTCCAATGAAATCCAATGCAGGGGCTTCCACTAGCAAGTTTTCTAGTTCTGAAGAAGTTAAGCCTAAGATTCGTCAGAATGGTTTGCCATCTGCGACAGTTTTAAGTAAGAGACCCCCTGGTGAGGTCAAGTCTGCTGCTCAGGCTTCAGTTAAAAAGCCTAGACTTTCTGATGCGTCCACACCTGTTTCTAGTAAGCAACCGCCTTTCAAAACTGAAAAGAAGACAGAGGACGATGACGACGATGTTCCTATATCTCAGAGGATAAAAAAGGCAGTAGATTCAGCTTCAGCTTCAGCTAGTAAAGTGTCATATGTGAAGAAAGCAACTAAAGTTGTTTCGTCATCGATGAAGAAAACAAAGAAGAAGTTGAAAAAACCCAAGTACTCTAAGTCGTCAAAACTGCAGCCAAGCTCTGGTGATGGGCAAAAATGGACTACACTGGAACACAATGGTGTGATTTTTCCACCTCCATACAAACCTCATGGGGTTAAGATGCTCTACAAGGGAAAGCCCGTGGATCTTACTCCAGAGCAGGAAGAG : GTCGCAACAATGTATGCCGTGATGTTAGACACTGAATACATGACTAAAGAGCAGTTCAAAGAGAATTTCATGAATGACTGGAGAAAAATACTTGGAAAAAACCATGTCATTCAAAAGTTAGAAGAGTGTGATTTTACCCCAATATATGAGTGGCATCAGAGTGAGAAGGAGAAGAAGAAGCAAATGAGTTCAGAA : GAGAAGAAGGCATTGAGAGAAGAGAAACTTAAGCAAGAAGAGAAATACATGTGGGCTATTGTGGATGGTGTTAAAGAGAAG : GTTGGGAACTTTCGGGTTGAACCACCTGGATTGTTCCGAGGCCGTGGGGAACATCCAAAG : ATGGGAAAGCTAAAGAGACGGATCCGGCCAAATGATATCACAATAAATATTGGAAAGGGTGTTCCAGTACCGGAGTGCCCCATCCCTGGCCAAAG : GTGGAAGGAAGTAAGGCATGACAACACAGTAACATGGTTAGCTTTCTGGAACGACCCTATTAATCCAAGAGAATTCAAATACGTTTTCCTAGCAGCCAGTAGTTCCTTGAAAGGGCAAAGTGATAAGGAGAAGTATGAGAAAGCTAGGCGTTTGAAG : GATTACATAGAAGGCATTAGATCTGCATATACAAAAGATTTTGCAAGTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAG : GATGATGACGAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAG : TTCGATTTTCTTGGTAAAGATTCTATCAGGTACCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTTAAAGCTATTCAACAGTTCCGAAGTG : GAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAA : TTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGAG : GTTGCAATAATTTGTAATCACCAGCGTACTGTCTCGAAGTCCCATAGCGTGCAAATTTCAAGGTTGAATAACAAGATAGATGAGTTAAAG : GCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGC : ATTACAGATAAAAATAGACCAAACTAATGTGAAGATTGATAACATAGAGAGGCAAATAGATACTAAAGAAGAGTTGAAAACTGTGGCTTTGGGCACATCAAAAATCAACTATTTGGATCCTAGGATTACTGTGGCATGGTGTAAGCGCCATGAGGTTCCCATTGAAAAG : ATGTTCAACAAGTCTCTTCTAGCAAAGTTTGCCTGGGCGATGGATGTTGAACCTTCCTTCACATTCTAAATTTTTGGTGGTTGTTATAGTGTAGGACATCTCTTCAAAGTCAAGTCTCCCTCCTAATACCCAATTGTTCACATTTCCCCCTTCCTCCCTCCTGGAAAGAGAATAGGAAAAAAGTTCTATTATTTTTGCACTTAAAAAAGAAGAAAAAAAAAGAGATCTTTGATCGTTGTCTGACAATATTTAAACTTGTTTACCCTGACAAATTCCTGTTGTAATTTGAGCTTCTGAATTTATGGG</gDNA_template>
            <first_frame> E  *  P  P  L  F  L  A  Y  E  L  P  H  P  H  S  P  P  P  S  D  L  F  L  R  P  N  S  S  P :   *  R  R  T  L  Y  D  S  I  A  *  R  K  I  M  A  V  E  A  F  A  K  T  N  L  M  E  D  M  D  D  D  D  D  M  P  L  V  F  K  R  S  S  T  T  S  K  Q  N  Q  S  N  S  S  S  Q  K  Q  D  G  R  S  G  R  Q  V  P  D  I  R  S  P  N  G  Q  S  S  S  T  H  K  V  K  T  V  T  S  S  K  A  S  P  A  V  S  P  L  T  S  P  K  A  S  P  L  S  S  R  T  S  P  A  P  N  S  R  P  S  S  S  A  G  N  Q  A  K  N  V  N  Q  Q  S  N  V  T  P  K  E  S  K  Q  A  V  E  P  K  S  E  P  N  D  E  A  E  D  S  D  D  D  K  L  L  S  S  R  V  P  S  G  L  S  K  S  T  S  V  H  A  K  K  V  L  C  T  S  T  S  V  Q  K  S  R  P  P  K  K  E  D  S  D  D  E  T  P  L  A  S  R  F  P  M  K  S  N  A  G  A  S  T  S  K  F  S  S  S  E  E  V  K  P  K  I  R  Q  N  G  L  P  S  A  T  V  L  S  K  R  P  P  G  E  V  K  S  A  A  Q  A  S  V  K  K  P  R  L  S  D  A  S  T  P  V  S  S  K  Q  P  P  F  K  T  E  K  K  T  E  D  D  D  D  D  V  P  I  S  Q  R  I  K  K  A  V  D  S  A  S  A  S  A  S  K  V  S  Y  V  K  K  A  T  K  V  V  S  S  S  M  K  K  T  K  K  K  L  K  K  P  K  Y  S  K  S  S  K  L  Q  P  S  S  G  D  G  Q  K  W  T  T  L  E  H  N  G  V  I  F  P  P  P  Y  K  P  H  G  V  K  M  L  Y  K  G  K  P  V  D  L  T  P  E  Q  E  E  :  V  A  T  M  Y  A  V  M  L  D  T  E  Y  M  T  K  E  Q  F  K  E  N  F  M  N  D  W  R  K  I  L  G  K  N  H  V  I  Q  K  L  E  E  C  D  F  T  P  I  Y  E  W  H  Q  S  E  K  E  K  K  K  Q  M  S  S  E  :  E  K  K  A  L  R  E  E  K  L  K  Q  E  E  K  Y  M  W  A  I  V  D  G  V  K  E  K  :  V  G  N  F  R  V  E  P  P  G  L  F  R  G  R  G  E  H  P  K  :  M  G  K  L  K  R  R  I  R  P  N  D  I  T  I  N  I  G  K  G  V  P  V  P  E  C  P  I  P  G  Q  R :   W  K  E  V  R  H  D  N  T  V  T  W  L  A  F  W  N  D  P  I  N  P  R  E  F  K  Y  V  F  L  A  A  S  S  S  L  K  G  Q  S  D  K  E  K  Y  E  K  A  R  R  L  K  :  D  Y  I  E  G  I  R  S  A  Y  T  K  D  F  A  S  K  D  P  V  K  R  Q  I  A  V  A  T  Y  L  I  D  K  L  A  L  R  A  G  N  E  K  :  D  D  D  E  A  D  T  V  G  C  C  T  L  K  V  E  N  V  E  P  V  P  P  N  I  L  K  :  F  D  F  L  G  K  D  S  I  R  Y  Q  N  E  V  A  V  Y  E  P  V  F  K  A  I  Q  Q  F  R  S   : G  K  K  G  S  D  D  L  F  D  K  L  D  T  S  K  L  N  A  H  L  K  E  L  M  P  G  L  T  A  K  V  F  R  T  Y  N  A  S  F  T  L  E  Q  Q  :  L  T  K  L  T  Q  G  G  E  L  A  D  K  I  A  V  Y  N  V  A  N  K  E  :  V  A  I  I  C  N  H  Q  R  T  V  S  K  S  H  S  V  Q  I  S  R  L  N  N  K  I  D  E  L  K  :  A  I  L  E  E  F  K  V  D  L  A  R  A  K  K  G  K  P  P  V  K  G  A  D  G  K  A  K  R  N  L  T  P  Q  A :   L  Q  I  K  I  D  Q  T  N  V  K  I  D  N  I  E  R  Q  I  D  T  K  E  E  L  K  T  V  A  L  G  T  S  K  I  N  Y  L  D  P  R  I  T  V  A  W  C  K  R  H  E  V  P  I  E  K  :  M  F  N  K  S  L  L  A  K  F  A  W  A  M  D  V  E  P  S  F  T  F  *  I  F  G  G  C  Y  S  V  G  H  L  F  K  V  K  S  P  S  *  Y  P  I  V  H  I  S  P  F  L  P  P  G  K  R  I  G  K  K  F  Y  Y  F  C  T  *  K  R  R  K  K  K  R  S  L  I  V  V  *  Q  Y  L  N  L  F  T  L  T  N  S  C  C  N  L  S  F  *  I  Y  G </first_frame>
            <second_frame>  N  D  H  H  S  S  S  P  T  N  F  L  I  P  I  L  L  L  L  P  I  S  F  S  G  Q  I  H  L   : H  K  G  E  H  Y  M  T  V  *  H  R  E  R  S  W  L  *  R  L  L  P  K  Q  I  *  W  K  I  W  M  M  T  M  T  C  L  *  F  S  N  E  V  V  P  H  Q  S  K  I  S  P  I  H  H  L  R  S  R  M  E  D  R  G  G  K  F  L  I  Y  V  H  L  M  A  R  A  L  V  L  I  K  L  R  Q  S  P  L  L  R  H  L  Q  Q  F  H  L  *  L  V  Q  K  R  R  L  C  Q  A  G  H  L  L  H  Q  T  Q  G  R  H  L  L  Q  V  I  R  Q  K  M  L  I  N  N  P  M  L  L  L  R  S  R  N  K  L  L  N  Q  N  L  N  L  M  M  K  L  R  I  L  M  M  I  N  Y  *  V  L  G  S  L  L  G  Y  L  R  A  L  L  F  M  P  R  K  C  F  V  L  Q  H  Q  F  R  S  L  D  L  P  K  K  R  I  Q  M  M  K  L  P  *  H  Q  G  F  Q  *  N  P  M  Q  G  L  P  L  A  S  F  L  V  L  K  K  L  S  L  R  F  V  R  M  V  C  H  L  R  Q  F  *  V  R  D  P  L  V  R  S  S  L  L  L  R  L  Q  L  K  S  L  D  F  L  M  R  P  H  L  F  L  V  S  N  R  L  S  K  L  K  R  R  Q  R  T  M  T  T  M  F  L  Y  L  R  G  *  K  R  Q  *  I  Q  L  Q  L  Q  L  V  K  C  H  M  *  R  K  Q  L  K  L  F  R  H  R  *  R  K  Q  R  R  S  *  K  N  P  S  T  L  S  R  Q  N  C  S  Q  A  L  V  M  G  K  N  G  L  H  W  N  T  M  V  *  F  F  H  L  H  T  N  L  M  G  L  R  C  S  T  R  E  S  P  W  I  L  L  Q  S  R  K  R :   S  Q  Q  C  M  P  *  C  *  T  L  N  T  *  L  K  S  S  S  K  R  I  S  *  M  T  G  E  K  Y  L  E  K  T  M  S  F  K  S  *  K  S  V  I  L  P  Q  Y  M  S  G  I  R  V  R  R  R  R  R  S  K  *  V  Q  K :   R  R  R  H  *  E  K  R  N  L  S  K  K  R  N  T  C  G  L  L  W  M  V  L  K  R  R :   L  G  T  F  G  L  N  H  L  D  C  S  E  A  V  G  N  I  Q  R :   W  E  S  *  R  D  G  S  G  Q  M  I  S  Q  *  I  L  E  R  V  F  Q  Y  R  S  A  P  S  L  A  K   : G  G  R  K  *  G  M  T  T  Q  *  H  G  *  L  S  G  T  T  L  L  I  Q  E  N  S  N  T  F  S  *  Q  P  V  V  P  *  K  G  K  V  I  R  R  S  M  R  K  L  G  V  *  R :   I  T  *  K  A  L  D  L  H  I  Q  K  I  L  Q  V  K  I  L  *  S  V  R  L  Q  L  Q  L  I  L  S  I  N  *  L  *  G  Q  G  M  R  R :   M  M  T  K  L  I  Q  L  V  A  V  L  *  K  *  R  M  *  S  Q  Y  L  Q  I  F  *  S :   S  I  F  L  V  K  I  L  S  G  T  K  M  R  W  L  C  M  S  L  F  L  K  L  F  N  S  S  E  V  :  E  K  R  A  V  T  I  F  L  T  S  L  I  R  V  S  L  M  P  I  *  R  N  S  C  Q  G  S  Q  Q  K  Y  F  V  H  I  M  H  L  L  H  W  S  S  N :   *  L  S  S  H  K  G  G  S  L  L  I  K  L  R  Y  I  M  W  Q  I  K  R :   L  Q  *  F  V  I  T  S  V  L  S  R  S  P  I  A  C  K  F  Q  G  *  I  T  R  *  M  S  *  R :   L  F  W  K  N  S  K  *  I  W  L  G  P  K  K  G  S  L  R  *  K  A  P  M  A  R  R  R  G  T  *  P  L  K   : H  Y  R  *  K  *  T  K  L  M  *  R  L  I  T  *  R  G  K  *  I  L  K  K  S  *  K  L  W  L  W  A  H  Q  K  S  T  I  W  I  L  G  L  L  W  H  G  V  S  A  M  R  F  P  L  K  R :   C  S  T  S  L  F  *  Q  S  L  P  G  R  W  M  L  N  L  P  S  H  S  K  F  L  V  V  V  I  V  *  D  I  S  S  K  S  S  L  P  P  N  T  Q  L  F  T  F  P  P  S  S  L  L  E  R  E  *  E  K  S  S  I  I  F  A  L  K  K  E  E  K  K  R  D  L  *  S  L  S  D  N  I  *  T  C  L  P  *  Q  I  P  V  V  I  *  A  S  E  F  M   </second_frame>
            <third_frame>   M  T  T  T  L  P  R  L  R  T  S  S  S  P  F  S  S  S  F  R  S  L  S  P  A  K  F  I  S  :  I  K  E  N  I  I  *  Q  Y  S  I  E  K  D  H  G  C  R  G  F  C  Q  N  K  F  D  G  R  Y  G  *  *  R  *  H  A  F  S  F  Q  T  K  *  Y  H  I  K  A  K  S  V  Q  F  I  I  S  E  A  G  W  K  I  G  A  A  S  S  *  Y  T  F  T  *  W  P  E  L  *  Y  S  *  S  *  D  S  H  L  F  *  G  I  S  S  S  F  T  F  N  *  S  K  S  V  A  S  V  K  Q  D  I  S  C  T  K  L  K  A  V  I  F  C  R  *  S  G  K  K  C  *  S  T  I  Q  C  Y  S  *  G  V  E  T  S  C  *  T  K  I  *  T  *  *  *  S  *  G  F  *  *  *  *  T  I  E  F  *  G  P  F  W  V  I  *  E  H  F  C  S  C  Q  E  S  A  L  Y  F  N  I  S  S  E  V  *  T  S  Q  K  R  G  F  R  *  *  N  S  L  S  I  K  V  S  N  E  I  Q  C  R  G  F  H  *  Q  V  F  *  F  *  R  S  *  A  *  D  S  S  E  W  F  A  I  C  D  S  F  K  *  E  T  P  W  *  G  Q  V  C  C  S  G  F  S  *  K  A  *  T  F  *  C  V  H  T  C  F  *  *  A  T  A  F  Q  N  *  K  E  D  R  G  R  *  R  R  C  S  Y  I  S  E  D  K  K  G  S  R  F  S  F  S  F  S  *  *  S  V  I  C  E  E  S  N  *  S  C  F  V  I  D  E  E  N  K  E  E  V  E  K  T  Q  V  L  *  V  V  K  T  A  A  K  L  W  *  W  A  K  M  D  Y  T  G  T  Q  W  C  D  F  S  T  S  I  Q  T  S  W  G  *  D  A  L  Q  G  K  A  R  G  S  Y  S  R  A  G  R   : G  R  N  N  V  C  R  D  V  R  H  *  I  H  D  *  R  A  V  Q  R  E  F  H  E  *  L  E  K  N  T  W  K  K  P  C  H  S  K  V  R  R  V  *  F  Y  P  N  I  *  V  A  S  E  *  E  G  E  E  E  A  N  E  F  R   : R  E  E  G  I  E  R  R  E  T  *  A  R  R  E  I  H  V  G  Y  C  G  W  C  *  R  E   : G  W  E  L  S  G  *  T  T  W  I  V  P  R  P  W  G  T  S  K   : D  G  K  A  K  E  T  D  P  A  K  *  Y  H  N  K  Y  W  K  G  C  S  S  T  G  V  P  H  P  W  P  K  :  V  E  G  S  K  A  *  Q  H  S  N  M  V  S  F  L  E  R  P  Y  *  S  K  R  I  Q  I  R  F  P  S  S  Q  *  F  L  E  R  A  K  *  *  G  E  V  *  E  S  *  A  F  E   : G  L  H  R  R  H  *  I  C  I  Y  K  R  F  C  K  *  R  S  C  E  A  S  D  C  S  C  N  L  S  Y  R  *  I  S  S  E  G  R  E  *  E   : G  *  *  R  S  *  Y  S  W  L  L  Y  F  E  S  R  E  C  R  A  S  T  S  K  Y  F  E   : V  R  F  S  W  *  R  F  Y  Q  V  P  K  *  G  G  C  V  *  A  C  F  *  S  Y  S  T  V  P  K  W :   K  K  G  Q  *  R  S  F  *  Q  A  *  Y  E  *  A  *  C  P  S  K  G  T  H  A  R  A  H  S  K  S  I  S  Y  I  *  C  I  F  Y  I  G  A  A   : I  D  *  A  H  T  R  G  G  A  C  *  *  N  C  G  I  *  C  G  K  *  R   : G  C  N  N  L  *  S  P  A  Y  C  L  E  V  P  *  R  A  N  F  K  V  E  *  Q  D  R  *  V  K   : G  Y  F  G  R  I  Q  S  R  F  G  S  G  Q  K  R  E  A  S  G  E  R  R  R  W  Q  G  E  E  E  L  D  P  S  S  :  I  T  D  K  N  R  P  N  *  C  E  D  *  *  H  R  E  A  N  R  Y  *  R  R  V  E  N  C  G  F  G  H  I  K  N  Q  L  F  G  S  *  D  Y  C  G  M  V  *  A  P  *  G  S  H  *  K   : D  V  Q  Q  V  S  S  S  K  V  C  L  G  D  G  C  *  T  F  L  H  I  L  N  F  W  W  L  L  *  C  R  T  S  L  Q  S  Q  V  S  L  L  I  P  N  C  S  H  F  P  L  P  P  S  W  K  E  N  R  K  K  V  L  L  F  L  H  L  K  K  K  K  K  K  E  I  F  D  R  C  L  T  I  F  K  L  V  Y  P  D  K  F  L  L  *  F  E  L  L  N  L  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0053G19.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50307" stop="49174"/>
                    <exon start="49095" stop="48901"/>
                    <exon start="47591" stop="47511"/>
                    <exon start="45970" stop="45911"/>
                    <exon start="45778" stop="45684"/>
                    <exon start="45529" stop="45373"/>
                    <exon start="45284" stop="45159"/>
                    <exon start="44769" stop="44689"/>
                    <exon start="44575" stop="44485"/>
                    <exon start="44397" stop="44264"/>
                    <exon start="42681" stop="42613"/>
                    <exon start="42526" stop="42437"/>
                    <exon start="42244" stop="42141"/>
                    <exon start="42061" stop="41893"/>
                    <exon start="41772" stop="41704"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2652</number_coding_nucleotides>
                  <number_encoded_amino_acids>884</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKIMAVEAFAKTNLMEDMDDDDDMPLVFKRSSTTSKQNQSNSSSQKQDGRSGRQVPDIRSPNGQSSSTHKVKTVTSSKASPAVSPLTSPKASPLSSRTSPAPNSRPSSSAGNQAKNVNQQSNVTPKESKQAVEPKSEPNDEAEDSDDDKLLSSRVPSGLSKSTSVHAKKVLCTSTSVQKSRPPKKEDSDDETPLASRFPMKSNAGASTSKFSSSEEVKPKIRQNGLPSATVLSKRPPGEVKSAAQASVKKPRLSDASTPVSSKQPPFKTEKKTEDDDDDVPISQRIKKAVDSASASASKVSYVKKATKVVSSSMKKTKKKLKKPKYSKSSKLQPSSGDGQKWTTLEHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMYAVMLDTEYMTKEQFKENFMNDWRKILGKNHVIQKLEECDFTPIYEWHQSEKEKKKQMSSEEKKALREEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPNDITINIGKGVPVPECPIPGQRWKEVRHDNTVTWLAFWNDPINPREFKYVFLAASSSLKGQSDKEKYEKARRLKDYIEGIRSAYTKDFASKDPVKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVAVYEPVFKAIQQFRSGKKGSDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASFTLEQQLTKLTQGGELADKIAVYNVANKEVAIICNHQRTVSKSHSVQISRLNNKIDELKAILEEFKVDLARAKKGKPPVKGADGKAKRNLTPQALQIKIDQTNVKIDNIERQIDTKEELKTVALGTSKINYLDPRITVAWCKRHEVPIEKMFNKSLLAKFAWAMDVEPSFTF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0053G19.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41683" stop="41489"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRTSLQSQVSLLIPNCSHFPLPPSWKENRKKVLLFLHLKKKKKKEIFDRCLTIFKLVYPDKFLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="51398" e_stop="51310"/>
            <exon e_start="50341" e_stop="49174"/>
            <exon e_start="49095" e_stop="48901"/>
            <exon e_start="47591" e_stop="47511"/>
            <exon e_start="45970" e_stop="45911"/>
            <exon e_start="45778" e_stop="45684"/>
            <exon e_start="45529" e_stop="45373"/>
            <exon e_start="45284" e_stop="45159"/>
            <exon e_start="44769" e_stop="44689"/>
            <exon e_start="44575" e_stop="44485"/>
            <exon e_start="44397" e_stop="44224"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.564" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.876" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51398" e_stop="51310" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="51309" i_stop="50342" i_length="968"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50341" e_stop="49174" e_length="1168"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49173" i_stop="49096" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49095" e_stop="48901" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.980">
            <gDNA_intron_boundary i_start="48900" i_stop="47592" i_length="1309"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47591" e_stop="47511" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.994">
            <gDNA_intron_boundary i_start="47510" i_stop="45971" i_length="1540"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45970" e_stop="45911" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.905">
            <gDNA_intron_boundary i_start="45910" i_stop="45779" i_length="132"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45778" e_stop="45684" e_length="95"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="45683" i_stop="45530" i_length="154"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="45529" e_stop="45373" e_length="157"/>
          </exon>
          <intron i_serial="7" don_prob="0.979" acc_prob="0.988">
            <gDNA_intron_boundary i_start="45372" i_stop="45285" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="45284" e_stop="45159" e_length="126"/>
          </exon>
          <intron i_serial="8" don_prob="0.971" acc_prob="0.878">
            <gDNA_intron_boundary i_start="45158" i_stop="44770" i_length="389"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="44769" e_stop="44689" e_length="81"/>
          </exon>
          <intron i_serial="9" don_prob="0.564" acc_prob="0.952">
            <gDNA_intron_boundary i_start="44688" i_stop="44576" i_length="113"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="44575" e_stop="44485" e_length="91"/>
          </exon>
          <intron i_serial="10" don_prob="0.876" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44484" i_stop="44398" i_length="87"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="44397" e_stop="44224" e_length="174"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51398" stop="51310"/>
              <exon start="50341" stop="49941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51388" stop="51310"/>
              <exon start="50341" stop="50037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51372" stop="51310"/>
              <exon start="50341" stop="49696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51371" stop="51310"/>
              <exon start="50341" stop="49753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51371" stop="51310"/>
              <exon start="50341" stop="49848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51348" stop="51310"/>
              <exon start="50341" stop="49699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51348" stop="51310"/>
              <exon start="50341" stop="49790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51348" stop="51310"/>
              <exon start="50341" stop="49811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50208" stop="49733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50095" stop="49555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49969" stop="49592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49907" stop="49610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49741" stop="49313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49665" stop="49174"/>
              <exon start="49095" stop="48997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49559" stop="49403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49517" stop="49174"/>
              <exon start="49095" stop="48901"/>
              <exon start="47591" stop="47526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49249" stop="49174"/>
              <exon start="49095" stop="48901"/>
              <exon start="47591" stop="47532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49208" stop="49174"/>
              <exon start="49095" stop="48901"/>
              <exon start="47591" stop="47511"/>
              <exon start="45970" stop="45911"/>
              <exon start="45778" stop="45684"/>
              <exon start="45529" stop="45373"/>
              <exon start="45284" stop="45254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47591" stop="47511"/>
              <exon start="45970" stop="45911"/>
              <exon start="45778" stop="45684"/>
              <exon start="45529" stop="45373"/>
              <exon start="45284" stop="45159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47579" stop="47511"/>
              <exon start="45970" stop="45911"/>
              <exon start="45778" stop="45684"/>
              <exon start="45529" stop="45373"/>
              <exon start="45284" stop="45159"/>
              <exon start="44769" stop="44689"/>
              <exon start="44575" stop="44485"/>
              <exon start="44397" stop="44348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45427" stop="45373"/>
              <exon start="45284" stop="45159"/>
              <exon start="44769" stop="44689"/>
              <exon start="44575" stop="44485"/>
              <exon start="44397" stop="44269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45253" stop="45159"/>
              <exon start="44769" stop="44689"/>
              <exon start="44575" stop="44485"/>
              <exon start="44397" stop="44224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293391" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATGACCACCACTCTTCCTCGCCTACGAACTTCCTCATCCCCATTCTCCTCCTCCTTCCGATCTCTTTCTCCGGCCAAATTCATCTCC : ATAAAGGAGAACATTATATGACAGTATAGCATAGAGAAAGATCATGGCTGTAGAGGCTTTTGCCAAAACAAATTTGATGGAAGATATGGATGATGACGATGACATGCCTTTAGTTTTCAAACGAAGTAGTACCACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGAAGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCATGCCAAGAAAGTGCTTTGTACTTCAACATCAGTTCAGAAGTCTAGACCTCCCAAAAAAGAGGATTCAGATGATGAAACTCCCTTAGCATCAAGGTTTCCAATGAAATCCAATGCAGGGGCTTCCACTAGCAAGTTTTCTAGTTCTGAAGAAGTTAAGCCTAAGATTCGTCAGAATGGTTTGCCATCTGCGACAGTTTTAAGTAAGAGACCCCCTGGTGAGGTCAAGTCTGCTGCTCAGGCTTCAGTTAAAAAGCCTAGACTTTCTGATGCGTCCACACCTGTTTCTAGTAAGCAACCGCCTTTCAAAACTGAAAAGAAGACAGAGGACGATGACGACGATGTTCCTATATCTCAGAGGATAAAAAAGGCAGTAGATTCAGCTTCAGCTTCAGCTAGTAAAGTGTCATATGTGAAGAAAGCAACTAAAGTTGTTTCGTCATCGATGAAGAAAACAAAGAAGAAGTTGAAAAAACCCAAGTACTCTAAGTCGTCAAAACTGCAGCCAAGCTCTGGTGATGGGCAAAAATGGACTACACTGGAACACAATGGTGTGATTTTTCCACCTCCATACAAACCTCATGGGGTTAAGATGCTCTACAAGGGAAAGCCCGTGGATCTTACTCCAGAGCAGGAAGAG : GTCGCAACAATGTATGCCGTGATGTTAGACACTGAATACATGACTAAAGAGCAGTTCAAAGAGAATTTCATGAATGACTGGAGAAAAATACTTGGAAAAAACCATGTCATTCAAAAGTTAGAAGAGTGTGATTTTACCCCAATATATGAGTGGCATCAGAGTGAGAAGGAGAAGAAGAAGCAAATGAGTTCAGAA : GAGAAGAAGGCATTGAGAGAAGAGAAACTTAAGCAAGAAGAGAAATACATGTGGGCTATTGTGGATGGTGTTAAAGAGAAG : GTTGGGAACTTTCGGGTTGAACCACCTGGATTGTTCCGAGGCCGTGGGGAACATCCAAAG : ATGGGAAAGCTAAAGAGACGGATCCGGCCAAATGATATCACAATAAATATTGGAAAGGGTGTTCCAGTACCGGAGTGCCCCATCCCTGGCCAAAG : GTGGAAGGAAGTAAGGCATGACAACACAGTAACATGGTTAGCTTTCTGGAACGACCCTATTAATCCAAGAGAATTCAAATACGTTTTCCTAGCAGCCAGTAGTTCCTTGAAAGGGCAAAGTGATAAGGAGAAGTATGAGAAAGCTAGGCGTTTGAAG : GATTACATAGAAGGCATTAGATCTGCATATACAAAAGATTTTGCAAGTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAG : GATGATGACGAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAG : TTCGATTTTCTTGGTAAAGATTCTATCAGGTACCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTTAAAGCTATTCAACAGTTCCGAAGTG : GAAAAAAGGGCAGTGACGATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATATAATGCATCTTTTACATTGGAGCAGCAAGTAAGTTGCTTTCAGAGACTAGACGTTTTTTTTGACTACT</gDNA_template>
            <first_frame> E  *  P  P  L  F  L  A  Y  E  L  P  H  P  H  S  P  P  P  S  D  L  F  L  R  P  N  S  S  P :   *  R  R  T  L  Y  D  S  I  A  *  R  K  I  M  A  V  E  A  F  A  K  T  N  L  M  E  D  M  D  D  D  D  D  M  P  L  V  F  K  R  S  S  T  T  S  K  Q  N  Q  S  N  S  S  S  Q  K  Q  D  G  R  S  G  R  Q  V  P  D  I  R  S  P  N  G  Q  S  S  S  T  H  K  V  K  T  V  T  S  S  K  A  S  P  A  V  S  P  L  T  S  P  K  A  S  P  L  S  S  R  T  S  P  A  P  N  S  R  P  S  S  S  A  G  N  Q  A  K  N  V  N  Q  Q  S  N  V  T  P  K  E  S  K  Q  A  V  E  P  K  S  E  P  N  D  E  A  E  D  S  D  D  D  K  L  L  S  S  R  V  P  S  G  L  S  K  S  T  S  V  H  A  K  K  V  L  C  T  S  T  S  V  Q  K  S  R  P  P  K  K  E  D  S  D  D  E  T  P  L  A  S  R  F  P  M  K  S  N  A  G  A  S  T  S  K  F  S  S  S  E  E  V  K  P  K  I  R  Q  N  G  L  P  S  A  T  V  L  S  K  R  P  P  G  E  V  K  S  A  A  Q  A  S  V  K  K  P  R  L  S  D  A  S  T  P  V  S  S  K  Q  P  P  F  K  T  E  K  K  T  E  D  D  D  D  D  V  P  I  S  Q  R  I  K  K  A  V  D  S  A  S  A  S  A  S  K  V  S  Y  V  K  K  A  T  K  V  V  S  S  S  M  K  K  T  K  K  K  L  K  K  P  K  Y  S  K  S  S  K  L  Q  P  S  S  G  D  G  Q  K  W  T  T  L  E  H  N  G  V  I  F  P  P  P  Y  K  P  H  G  V  K  M  L  Y  K  G  K  P  V  D  L  T  P  E  Q  E  E  :  V  A  T  M  Y  A  V  M  L  D  T  E  Y  M  T  K  E  Q  F  K  E  N  F  M  N  D  W  R  K  I  L  G  K  N  H  V  I  Q  K  L  E  E  C  D  F  T  P  I  Y  E  W  H  Q  S  E  K  E  K  K  K  Q  M  S  S  E  :  E  K  K  A  L  R  E  E  K  L  K  Q  E  E  K  Y  M  W  A  I  V  D  G  V  K  E  K  :  V  G  N  F  R  V  E  P  P  G  L  F  R  G  R  G  E  H  P  K  :  M  G  K  L  K  R  R  I  R  P  N  D  I  T  I  N  I  G  K  G  V  P  V  P  E  C  P  I  P  G  Q  R :   W  K  E  V  R  H  D  N  T  V  T  W  L  A  F  W  N  D  P  I  N  P  R  E  F  K  Y  V  F  L  A  A  S  S  S  L  K  G  Q  S  D  K  E  K  Y  E  K  A  R  R  L  K  :  D  Y  I  E  G  I  R  S  A  Y  T  K  D  F  A  S  K  D  P  V  K  R  Q  I  A  V  A  T  Y  L  I  D  K  L  A  L  R  A  G  N  E  K  :  D  D  D  E  A  D  T  V  G  C  C  T  L  K  V  E  N  V  E  P  V  P  P  N  I  L  K  :  F  D  F  L  G  K  D  S  I  R  Y  Q  N  E  V  A  V  Y  E  P  V  F  K  A  I  Q  Q  F  R  S   : G  K  K  G  S  D  D  L  F  D  K  L  D  T  S  K  L  N  A  H  L  K  E  L  M  P  G  L  T  A  K  V  F  R  T  Y  N  A  S  F  T  L  E  Q  Q  V  S  C  F  Q  R  L  D  V  F  F  D  Y  </first_frame>
            <second_frame>  N  D  H  H  S  S  S  P  T  N  F  L  I  P  I  L  L  L  L  P  I  S  F  S  G  Q  I  H  L   : H  K  G  E  H  Y  M  T  V  *  H  R  E  R  S  W  L  *  R  L  L  P  K  Q  I  *  W  K  I  W  M  M  T  M  T  C  L  *  F  S  N  E  V  V  P  H  Q  S  K  I  S  P  I  H  H  L  R  S  R  M  E  D  R  G  G  K  F  L  I  Y  V  H  L  M  A  R  A  L  V  L  I  K  L  R  Q  S  P  L  L  R  H  L  Q  Q  F  H  L  *  L  V  Q  K  R  R  L  C  Q  A  G  H  L  L  H  Q  T  Q  G  R  H  L  L  Q  V  I  R  Q  K  M  L  I  N  N  P  M  L  L  L  R  S  R  N  K  L  L  N  Q  N  L  N  L  M  M  K  L  R  I  L  M  M  I  N  Y  *  V  L  G  S  L  L  G  Y  L  R  A  L  L  F  M  P  R  K  C  F  V  L  Q  H  Q  F  R  S  L  D  L  P  K  K  R  I  Q  M  M  K  L  P  *  H  Q  G  F  Q  *  N  P  M  Q  G  L  P  L  A  S  F  L  V  L  K  K  L  S  L  R  F  V  R  M  V  C  H  L  R  Q  F  *  V  R  D  P  L  V  R  S  S  L  L  L  R  L  Q  L  K  S  L  D  F  L  M  R  P  H  L  F  L  V  S  N  R  L  S  K  L  K  R  R  Q  R  T  M  T  T  M  F  L  Y  L  R  G  *  K  R  Q  *  I  Q  L  Q  L  Q  L  V  K  C  H  M  *  R  K  Q  L  K  L  F  R  H  R  *  R  K  Q  R  R  S  *  K  N  P  S  T  L  S  R  Q  N  C  S  Q  A  L  V  M  G  K  N  G  L  H  W  N  T  M  V  *  F  F  H  L  H  T  N  L  M  G  L  R  C  S  T  R  E  S  P  W  I  L  L  Q  S  R  K  R :   S  Q  Q  C  M  P  *  C  *  T  L  N  T  *  L  K  S  S  S  K  R  I  S  *  M  T  G  E  K  Y  L  E  K  T  M  S  F  K  S  *  K  S  V  I  L  P  Q  Y  M  S  G  I  R  V  R  R  R  R  R  S  K  *  V  Q  K :   R  R  R  H  *  E  K  R  N  L  S  K  K  R  N  T  C  G  L  L  W  M  V  L  K  R  R :   L  G  T  F  G  L  N  H  L  D  C  S  E  A  V  G  N  I  Q  R :   W  E  S  *  R  D  G  S  G  Q  M  I  S  Q  *  I  L  E  R  V  F  Q  Y  R  S  A  P  S  L  A  K   : G  G  R  K  *  G  M  T  T  Q  *  H  G  *  L  S  G  T  T  L  L  I  Q  E  N  S  N  T  F  S  *  Q  P  V  V  P  *  K  G  K  V  I  R  R  S  M  R  K  L  G  V  *  R :   I  T  *  K  A  L  D  L  H  I  Q  K  I  L  Q  V  K  I  L  *  S  V  R  L  Q  L  Q  L  I  L  S  I  N  *  L  *  G  Q  G  M  R  R :   M  M  T  K  L  I  Q  L  V  A  V  L  *  K  *  R  M  *  S  Q  Y  L  Q  I  F  *  S :   S  I  F  L  V  K  I  L  S  G  T  K  M  R  W  L  C  M  S  L  F  L  K  L  F  N  S  S  E  V  :  E  K  R  A  V  T  I  F  L  T  S  L  I  R  V  S  L  M  P  I  *  R  N  S  C  Q  G  S  Q  Q  K  Y  F  V  H  I  M  H  L  L  H  W  S  S  K  *  V  A  F  R  D  *  T  F  F  L  T  T </second_frame>
            <third_frame>   M  T  T  T  L  P  R  L  R  T  S  S  S  P  F  S  S  S  F  R  S  L  S  P  A  K  F  I  S  :  I  K  E  N  I  I  *  Q  Y  S  I  E  K  D  H  G  C  R  G  F  C  Q  N  K  F  D  G  R  Y  G  *  *  R  *  H  A  F  S  F  Q  T  K  *  Y  H  I  K  A  K  S  V  Q  F  I  I  S  E  A  G  W  K  I  G  A  A  S  S  *  Y  T  F  T  *  W  P  E  L  *  Y  S  *  S  *  D  S  H  L  F  *  G  I  S  S  S  F  T  F  N  *  S  K  S  V  A  S  V  K  Q  D  I  S  C  T  K  L  K  A  V  I  F  C  R  *  S  G  K  K  C  *  S  T  I  Q  C  Y  S  *  G  V  E  T  S  C  *  T  K  I  *  T  *  *  *  S  *  G  F  *  *  *  *  T  I  E  F  *  G  P  F  W  V  I  *  E  H  F  C  S  C  Q  E  S  A  L  Y  F  N  I  S  S  E  V  *  T  S  Q  K  R  G  F  R  *  *  N  S  L  S  I  K  V  S  N  E  I  Q  C  R  G  F  H  *  Q  V  F  *  F  *  R  S  *  A  *  D  S  S  E  W  F  A  I  C  D  S  F  K  *  E  T  P  W  *  G  Q  V  C  C  S  G  F  S  *  K  A  *  T  F  *  C  V  H  T  C  F  *  *  A  T  A  F  Q  N  *  K  E  D  R  G  R  *  R  R  C  S  Y  I  S  E  D  K  K  G  S  R  F  S  F  S  F  S  *  *  S  V  I  C  E  E  S  N  *  S  C  F  V  I  D  E  E  N  K  E  E  V  E  K  T  Q  V  L  *  V  V  K  T  A  A  K  L  W  *  W  A  K  M  D  Y  T  G  T  Q  W  C  D  F  S  T  S  I  Q  T  S  W  G  *  D  A  L  Q  G  K  A  R  G  S  Y  S  R  A  G  R   : G  R  N  N  V  C  R  D  V  R  H  *  I  H  D  *  R  A  V  Q  R  E  F  H  E  *  L  E  K  N  T  W  K  K  P  C  H  S  K  V  R  R  V  *  F  Y  P  N  I  *  V  A  S  E  *  E  G  E  E  E  A  N  E  F  R   : R  E  E  G  I  E  R  R  E  T  *  A  R  R  E  I  H  V  G  Y  C  G  W  C  *  R  E   : G  W  E  L  S  G  *  T  T  W  I  V  P  R  P  W  G  T  S  K   : D  G  K  A  K  E  T  D  P  A  K  *  Y  H  N  K  Y  W  K  G  C  S  S  T  G  V  P  H  P  W  P  K  :  V  E  G  S  K  A  *  Q  H  S  N  M  V  S  F  L  E  R  P  Y  *  S  K  R  I  Q  I  R  F  P  S  S  Q  *  F  L  E  R  A  K  *  *  G  E  V  *  E  S  *  A  F  E   : G  L  H  R  R  H  *  I  C  I  Y  K  R  F  C  K  *  R  S  C  E  A  S  D  C  S  C  N  L  S  Y  R  *  I  S  S  E  G  R  E  *  E   : G  *  *  R  S  *  Y  S  W  L  L  Y  F  E  S  R  E  C  R  A  S  T  S  K  Y  F  E   : V  R  F  S  W  *  R  F  Y  Q  V  P  K  *  G  G  C  V  *  A  C  F  *  S  Y  S  T  V  P  K  W :   K  K  G  Q  *  R  S  F  *  Q  A  *  Y  E  *  A  *  C  P  S  K  G  T  H  A  R  A  H  S  K  S  I  S  Y  I  *  C  I  F  Y  I  G  A  A  S  K  L  L  S  E  T  R  R  F  F  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0053G19.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50307" stop="49174"/>
                    <exon start="49095" stop="48901"/>
                    <exon start="47591" stop="47511"/>
                    <exon start="45970" stop="45911"/>
                    <exon start="45778" stop="45684"/>
                    <exon start="45529" stop="45373"/>
                    <exon start="45284" stop="45159"/>
                    <exon start="44769" stop="44689"/>
                    <exon start="44575" stop="44485"/>
                    <exon start="44397" stop="44225"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2193</number_coding_nucleotides>
                  <number_encoded_amino_acids>731</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKIMAVEAFAKTNLMEDMDDDDDMPLVFKRSSTTSKQNQSNSSSQKQDGRSGRQVPDIRSPNGQSSSTHKVKTVTSSKASPAVSPLTSPKASPLSSRTSPAPNSRPSSSAGNQAKNVNQQSNVTPKESKQAVEPKSEPNDEAEDSDDDKLLSSRVPSGLSKSTSVHAKKVLCTSTSVQKSRPPKKEDSDDETPLASRFPMKSNAGASTSKFSSSEEVKPKIRQNGLPSATVLSKRPPGEVKSAAQASVKKPRLSDASTPVSSKQPPFKTEKKTEDDDDDVPISQRIKKAVDSASASASKVSYVKKATKVVSSSMKKTKKKLKKPKYSKSSKLQPSSGDGQKWTTLEHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMYAVMLDTEYMTKEQFKENFMNDWRKILGKNHVIQKLEECDFTPIYEWHQSEKEKKKQMSSEEKKALREEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPNDITINIGKGVPVPECPIPGQRWKEVRHDNTVTWLAFWNDPINPREFKYVFLAASSSLKGQSDKEKYEKARRLKDYIEGIRSAYTKDFASKDPVKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVAVYEPVFKAIQQFRSGKKGSDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASFTLEQQVSCFQRLDVFFDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="51398" e_stop="51310"/>
            <exon e_start="50341" e_stop="49174"/>
            <exon e_start="49095" e_stop="48901"/>
            <exon e_start="47591" e_stop="47511"/>
            <exon e_start="45970" e_stop="45911"/>
            <exon e_start="45778" e_stop="45684"/>
            <exon e_start="45529" e_stop="45373"/>
            <exon e_start="45284" e_stop="45159"/>
            <exon e_start="44769" e_stop="44639"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.878" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51398" e_stop="51310" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="51309" i_stop="50342" i_length="968"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50341" e_stop="49174" e_length="1168"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49173" i_stop="49096" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49095" e_stop="48901" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.980">
            <gDNA_intron_boundary i_start="48900" i_stop="47592" i_length="1309"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47591" e_stop="47511" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.994">
            <gDNA_intron_boundary i_start="47510" i_stop="45971" i_length="1540"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45970" e_stop="45911" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.905">
            <gDNA_intron_boundary i_start="45910" i_stop="45779" i_length="132"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45778" e_stop="45684" e_length="95"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="45683" i_stop="45530" i_length="154"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="45529" e_stop="45373" e_length="157"/>
          </exon>
          <intron i_serial="7" don_prob="0.979" acc_prob="0.988">
            <gDNA_intron_boundary i_start="45372" i_stop="45285" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="45284" e_stop="45159" e_length="126"/>
          </exon>
          <intron i_serial="8" don_prob="0.971" acc_prob="0.878">
            <gDNA_intron_boundary i_start="45158" i_stop="44770" i_length="389"/>
          </intron>
          <exon e_serial="9" e_score="0.977">
            <gDNA_exon_boundary e_start="44769" e_stop="44639" e_length="131"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51398" stop="51310"/>
              <exon start="50341" stop="49941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51388" stop="51310"/>
              <exon start="50341" stop="50037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51372" stop="51310"/>
              <exon start="50341" stop="49696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51371" stop="51310"/>
              <exon start="50341" stop="49753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51371" stop="51310"/>
              <exon start="50341" stop="49848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51348" stop="51310"/>
              <exon start="50341" stop="49699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51348" stop="51310"/>
              <exon start="50341" stop="49790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51348" stop="51310"/>
              <exon start="50341" stop="49811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50208" stop="49733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50095" stop="49555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49969" stop="49592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49907" stop="49610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49741" stop="49313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49665" stop="49174"/>
              <exon start="49095" stop="48997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49559" stop="49403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49517" stop="49174"/>
              <exon start="49095" stop="48901"/>
              <exon start="47591" stop="47526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49249" stop="49174"/>
              <exon start="49095" stop="48901"/>
              <exon start="47591" stop="47532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49208" stop="49174"/>
              <exon start="49095" stop="48901"/>
              <exon start="47591" stop="47511"/>
              <exon start="45970" stop="45911"/>
              <exon start="45778" stop="45684"/>
              <exon start="45529" stop="45373"/>
              <exon start="45284" stop="45254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49035" stop="48901"/>
              <exon start="47591" stop="47511"/>
              <exon start="45970" stop="45911"/>
              <exon start="45778" stop="45684"/>
              <exon start="45529" stop="45373"/>
              <exon start="45284" stop="45159"/>
              <exon start="44769" stop="44639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47591" stop="47511"/>
              <exon start="45970" stop="45911"/>
              <exon start="45778" stop="45684"/>
              <exon start="45529" stop="45373"/>
              <exon start="45284" stop="45159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATGACCACCACTCTTCCTCGCCTACGAACTTCCTCATCCCCATTCTCCTCCTCCTTCCGATCTCTTTCTCCGGCCAAATTCATCTCC : ATAAAGGAGAACATTATATGACAGTATAGCATAGAGAAAGATCATGGCTGTAGAGGCTTTTGCCAAAACAAATTTGATGGAAGATATGGATGATGACGATGACATGCCTTTAGTTTTCAAACGAAGTAGTACCACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGAAGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCATCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCTGCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAATGATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCATGCCAAGAAAGTGCTTTGTACTTCAACATCAGTTCAGAAGTCTAGACCTCCCAAAAAAGAGGATTCAGATGATGAAACTCCCTTAGCATCAAGGTTTCCAATGAAATCCAATGCAGGGGCTTCCACTAGCAAGTTTTCTAGTTCTGAAGAAGTTAAGCCTAAGATTCGTCAGAATGGTTTGCCATCTGCGACAGTTTTAAGTAAGAGACCCCCTGGTGAGGTCAAGTCTGCTGCTCAGGCTTCAGTTAAAAAGCCTAGACTTTCTGATGCGTCCACACCTGTTTCTAGTAAGCAACCGCCTTTCAAAACTGAAAAGAAGACAGAGGACGATGACGACGATGTTCCTATATCTCAGAGGATAAAAAAGGCAGTAGATTCAGCTTCAGCTTCAGCTAGTAAAGTGTCATATGTGAAGAAAGCAACTAAAGTTGTTTCGTCATCGATGAAGAAAACAAAGAAGAAGTTGAAAAAACCCAAGTACTCTAAGTCGTCAAAACTGCAGCCAAGCTCTGGTGATGGGCAAAAATGGACTACACTGGAACACAATGGTGTGATTTTTCCACCTCCATACAAACCTCATGGGGTTAAGATGCTCTACAAGGGAAAGCCCGTGGATCTTACTCCAGAGCAGGAAGAG : GTCGCAACAATGTATGCCGTGATGTTAGACACTGAATACATGACTAAAGAGCAGTTCAAAGAGAATTTCATGAATGACTGGAGAAAAATACTTGGAAAAAACCATGTCATTCAAAAGTTAGAAGAGTGTGATTTTACCCCAATATATGAGTGGCATCAGAGTGAGAAGGAGAAGAAGAAGCAAATGAGTTCAGAA : GAGAAGAAGGCATTGAGAGAAGAGAAACTTAAGCAAGAAGAGAAATACATGTGGGCTATTGTGGATGGTGTTAAAGAGAAG : GTTGGGAACTTTCGGGTTGAACCACCTGGATTGTTCCGAGGCCGTGGGGAACATCCAAAG : ATGGGAAAGCTAAAGAGACGGATCCGGCCAAATGATATCACAATAAATATTGGAAAGGGTGTTCCAGTACCGGAGTGCCCCATCCCTGGCCAAAG : GTGGAAGGAAGTAAGGCATGACAACACAGTAACATGGTTAGCTTTCTGGAACGACCCTATTAATCCAAGAGAATTCAAATACGTTTTCCTAGCAGCCAGTAGTTCCTTGAAAGGGCAAAGTGATAAGGAGAAGTATGAGAAAGCTAGGCGTTTGAAG : GATTACATAGAAGGCATTAGATCTGCATATACAAAAGATTTTGCAAGTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAG : GATGATGACGAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAGGTATTGTGGTTTTAAAAGCTAAATTGGAAGAGCTCTCGGAAATTTACTCC</gDNA_template>
            <first_frame> E  *  P  P  L  F  L  A  Y  E  L  P  H  P  H  S  P  P  P  S  D  L  F  L  R  P  N  S  S  P :   *  R  R  T  L  Y  D  S  I  A  *  R  K  I  M  A  V  E  A  F  A  K  T  N  L  M  E  D  M  D  D  D  D  D  M  P  L  V  F  K  R  S  S  T  T  S  K  Q  N  Q  S  N  S  S  S  Q  K  Q  D  G  R  S  G  R  Q  V  P  D  I  R  S  P  N  G  Q  S  S  S  T  H  K  V  K  T  V  T  S  S  K  A  S  P  A  V  S  P  L  T  S  P  K  A  S  P  L  S  S  R  T  S  P  A  P  N  S  R  P  S  S  S  A  G  N  Q  A  K  N  V  N  Q  Q  S  N  V  T  P  K  E  S  K  Q  A  V  E  P  K  S  E  P  N  D  E  A  E  D  S  D  D  D  K  L  L  S  S  R  V  P  S  G  L  S  K  S  T  S  V  H  A  K  K  V  L  C  T  S  T  S  V  Q  K  S  R  P  P  K  K  E  D  S  D  D  E  T  P  L  A  S  R  F  P  M  K  S  N  A  G  A  S  T  S  K  F  S  S  S  E  E  V  K  P  K  I  R  Q  N  G  L  P  S  A  T  V  L  S  K  R  P  P  G  E  V  K  S  A  A  Q  A  S  V  K  K  P  R  L  S  D  A  S  T  P  V  S  S  K  Q  P  P  F  K  T  E  K  K  T  E  D  D  D  D  D  V  P  I  S  Q  R  I  K  K  A  V  D  S  A  S  A  S  A  S  K  V  S  Y  V  K  K  A  T  K  V  V  S  S  S  M  K  K  T  K  K  K  L  K  K  P  K  Y  S  K  S  S  K  L  Q  P  S  S  G  D  G  Q  K  W  T  T  L  E  H  N  G  V  I  F  P  P  P  Y  K  P  H  G  V  K  M  L  Y  K  G  K  P  V  D  L  T  P  E  Q  E  E  :  V  A  T  M  Y  A  V  M  L  D  T  E  Y  M  T  K  E  Q  F  K  E  N  F  M  N  D  W  R  K  I  L  G  K  N  H  V  I  Q  K  L  E  E  C  D  F  T  P  I  Y  E  W  H  Q  S  E  K  E  K  K  K  Q  M  S  S  E  :  E  K  K  A  L  R  E  E  K  L  K  Q  E  E  K  Y  M  W  A  I  V  D  G  V  K  E  K  :  V  G  N  F  R  V  E  P  P  G  L  F  R  G  R  G  E  H  P  K  :  M  G  K  L  K  R  R  I  R  P  N  D  I  T  I  N  I  G  K  G  V  P  V  P  E  C  P  I  P  G  Q  R :   W  K  E  V  R  H  D  N  T  V  T  W  L  A  F  W  N  D  P  I  N  P  R  E  F  K  Y  V  F  L  A  A  S  S  S  L  K  G  Q  S  D  K  E  K  Y  E  K  A  R  R  L  K  :  D  Y  I  E  G  I  R  S  A  Y  T  K  D  F  A  S  K  D  P  V  K  R  Q  I  A  V  A  T  Y  L  I  D  K  L  A  L  R  A  G  N  E  K  :  D  D  D  E  A  D  T  V  G  C  C  T  L  K  V  E  N  V  E  P  V  P  P  N  I  L  K  V  L  W  F  *  K  L  N  W  K  S  S  R  K  F  T   </first_frame>
            <second_frame>  N  D  H  H  S  S  S  P  T  N  F  L  I  P  I  L  L  L  L  P  I  S  F  S  G  Q  I  H  L   : H  K  G  E  H  Y  M  T  V  *  H  R  E  R  S  W  L  *  R  L  L  P  K  Q  I  *  W  K  I  W  M  M  T  M  T  C  L  *  F  S  N  E  V  V  P  H  Q  S  K  I  S  P  I  H  H  L  R  S  R  M  E  D  R  G  G  K  F  L  I  Y  V  H  L  M  A  R  A  L  V  L  I  K  L  R  Q  S  P  L  L  R  H  L  Q  Q  F  H  L  *  L  V  Q  K  R  R  L  C  Q  A  G  H  L  L  H  Q  T  Q  G  R  H  L  L  Q  V  I  R  Q  K  M  L  I  N  N  P  M  L  L  L  R  S  R  N  K  L  L  N  Q  N  L  N  L  M  M  K  L  R  I  L  M  M  I  N  Y  *  V  L  G  S  L  L  G  Y  L  R  A  L  L  F  M  P  R  K  C  F  V  L  Q  H  Q  F  R  S  L  D  L  P  K  K  R  I  Q  M  M  K  L  P  *  H  Q  G  F  Q  *  N  P  M  Q  G  L  P  L  A  S  F  L  V  L  K  K  L  S  L  R  F  V  R  M  V  C  H  L  R  Q  F  *  V  R  D  P  L  V  R  S  S  L  L  L  R  L  Q  L  K  S  L  D  F  L  M  R  P  H  L  F  L  V  S  N  R  L  S  K  L  K  R  R  Q  R  T  M  T  T  M  F  L  Y  L  R  G  *  K  R  Q  *  I  Q  L  Q  L  Q  L  V  K  C  H  M  *  R  K  Q  L  K  L  F  R  H  R  *  R  K  Q  R  R  S  *  K  N  P  S  T  L  S  R  Q  N  C  S  Q  A  L  V  M  G  K  N  G  L  H  W  N  T  M  V  *  F  F  H  L  H  T  N  L  M  G  L  R  C  S  T  R  E  S  P  W  I  L  L  Q  S  R  K  R :   S  Q  Q  C  M  P  *  C  *  T  L  N  T  *  L  K  S  S  S  K  R  I  S  *  M  T  G  E  K  Y  L  E  K  T  M  S  F  K  S  *  K  S  V  I  L  P  Q  Y  M  S  G  I  R  V  R  R  R  R  R  S  K  *  V  Q  K :   R  R  R  H  *  E  K  R  N  L  S  K  K  R  N  T  C  G  L  L  W  M  V  L  K  R  R :   L  G  T  F  G  L  N  H  L  D  C  S  E  A  V  G  N  I  Q  R :   W  E  S  *  R  D  G  S  G  Q  M  I  S  Q  *  I  L  E  R  V  F  Q  Y  R  S  A  P  S  L  A  K   : G  G  R  K  *  G  M  T  T  Q  *  H  G  *  L  S  G  T  T  L  L  I  Q  E  N  S  N  T  F  S  *  Q  P  V  V  P  *  K  G  K  V  I  R  R  S  M  R  K  L  G  V  *  R :   I  T  *  K  A  L  D  L  H  I  Q  K  I  L  Q  V  K  I  L  *  S  V  R  L  Q  L  Q  L  I  L  S  I  N  *  L  *  G  Q  G  M  R  R :   M  M  T  K  L  I  Q  L  V  A  V  L  *  K  *  R  M  *  S  Q  Y  L  Q  I  F  *  R  Y  C  G  F  K  S  *  I  G  R  A  L  G  N  L  L  </second_frame>
            <third_frame>   M  T  T  T  L  P  R  L  R  T  S  S  S  P  F  S  S  S  F  R  S  L  S  P  A  K  F  I  S  :  I  K  E  N  I  I  *  Q  Y  S  I  E  K  D  H  G  C  R  G  F  C  Q  N  K  F  D  G  R  Y  G  *  *  R  *  H  A  F  S  F  Q  T  K  *  Y  H  I  K  A  K  S  V  Q  F  I  I  S  E  A  G  W  K  I  G  A  A  S  S  *  Y  T  F  T  *  W  P  E  L  *  Y  S  *  S  *  D  S  H  L  F  *  G  I  S  S  S  F  T  F  N  *  S  K  S  V  A  S  V  K  Q  D  I  S  C  T  K  L  K  A  V  I  F  C  R  *  S  G  K  K  C  *  S  T  I  Q  C  Y  S  *  G  V  E  T  S  C  *  T  K  I  *  T  *  *  *  S  *  G  F  *  *  *  *  T  I  E  F  *  G  P  F  W  V  I  *  E  H  F  C  S  C  Q  E  S  A  L  Y  F  N  I  S  S  E  V  *  T  S  Q  K  R  G  F  R  *  *  N  S  L  S  I  K  V  S  N  E  I  Q  C  R  G  F  H  *  Q  V  F  *  F  *  R  S  *  A  *  D  S  S  E  W  F  A  I  C  D  S  F  K  *  E  T  P  W  *  G  Q  V  C  C  S  G  F  S  *  K  A  *  T  F  *  C  V  H  T  C  F  *  *  A  T  A  F  Q  N  *  K  E  D  R  G  R  *  R  R  C  S  Y  I  S  E  D  K  K  G  S  R  F  S  F  S  F  S  *  *  S  V  I  C  E  E  S  N  *  S  C  F  V  I  D  E  E  N  K  E  E  V  E  K  T  Q  V  L  *  V  V  K  T  A  A  K  L  W  *  W  A  K  M  D  Y  T  G  T  Q  W  C  D  F  S  T  S  I  Q  T  S  W  G  *  D  A  L  Q  G  K  A  R  G  S  Y  S  R  A  G  R   : G  R  N  N  V  C  R  D  V  R  H  *  I  H  D  *  R  A  V  Q  R  E  F  H  E  *  L  E  K  N  T  W  K  K  P  C  H  S  K  V  R  R  V  *  F  Y  P  N  I  *  V  A  S  E  *  E  G  E  E  E  A  N  E  F  R   : R  E  E  G  I  E  R  R  E  T  *  A  R  R  E  I  H  V  G  Y  C  G  W  C  *  R  E   : G  W  E  L  S  G  *  T  T  W  I  V  P  R  P  W  G  T  S  K   : D  G  K  A  K  E  T  D  P  A  K  *  Y  H  N  K  Y  W  K  G  C  S  S  T  G  V  P  H  P  W  P  K  :  V  E  G  S  K  A  *  Q  H  S  N  M  V  S  F  L  E  R  P  Y  *  S  K  R  I  Q  I  R  F  P  S  S  Q  *  F  L  E  R  A  K  *  *  G  E  V  *  E  S  *  A  F  E   : G  L  H  R  R  H  *  I  C  I  Y  K  R  F  C  K  *  R  S  C  E  A  S  D  C  S  C  N  L  S  Y  R  *  I  S  S  E  G  R  E  *  E   : G  *  *  R  S  *  Y  S  W  L  L  Y  F  E  S  R  E  C  R  A  S  T  S  K  Y  F  E  G  I  V  V  L  K  A  K  L  E  E  L  S  E  I  Y  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0053G19.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50307" stop="49174"/>
                    <exon start="49095" stop="48901"/>
                    <exon start="47591" stop="47511"/>
                    <exon start="45970" stop="45911"/>
                    <exon start="45778" stop="45684"/>
                    <exon start="45529" stop="45373"/>
                    <exon start="45284" stop="45159"/>
                    <exon start="44769" stop="44674"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1941</number_coding_nucleotides>
                  <number_encoded_amino_acids>647</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKIMAVEAFAKTNLMEDMDDDDDMPLVFKRSSTTSKQNQSNSSSQKQDGRSGRQVPDIRSPNGQSSSTHKVKTVTSSKASPAVSPLTSPKASPLSSRTSPAPNSRPSSSAGNQAKNVNQQSNVTPKESKQAVEPKSEPNDEAEDSDDDKLLSSRVPSGLSKSTSVHAKKVLCTSTSVQKSRPPKKEDSDDETPLASRFPMKSNAGASTSKFSSSEEVKPKIRQNGLPSATVLSKRPPGEVKSAAQASVKKPRLSDASTPVSSKQPPFKTEKKTEDDDDDVPISQRIKKAVDSASASASKVSYVKKATKVVSSSMKKTKKKLKKPKYSKSSKLQPSSGDGQKWTTLEHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMYAVMLDTEYMTKEQFKENFMNDWRKILGKNHVIQKLEECDFTPIYEWHQSEKEKKKQMSSEEKKALREEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPNDITINIGKGVPVPECPIPGQRWKEVRHDNTVTWLAFWNDPINPREFKYVFLAASSSLKGQSDKEKYEKARRLKDYIEGIRSAYTKDFASKDPVKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKVLWF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="43037" e_stop="42613"/>
            <exon e_start="42526" e_stop="42437"/>
            <exon e_start="42244" e_stop="41893"/>
            <exon e_start="41772" e_stop="41589"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43037" e_stop="42613" e_length="425"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42612" i_stop="42527" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42526" e_stop="42437" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.995">
            <gDNA_intron_boundary i_start="42436" i_stop="42245" i_length="192"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42244" e_stop="41893" e_length="352"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.974">
            <gDNA_intron_boundary i_start="41892" i_stop="41773" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="41772" e_stop="41589" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43037" stop="42613"/>
              <exon start="42526" stop="42437"/>
              <exon start="42244" stop="42043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43037" stop="42715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42705" stop="42613"/>
              <exon start="42526" stop="42437"/>
              <exon start="42244" stop="41893"/>
              <exon start="41772" stop="41589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379573" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTGAATATTGGATTGAAGCTGATTGCTTTGTGGAGACATGAATAGTGAGGATTCACATAGCCCAGCCTAATTAGCTTGGGATTTAGGTGGTGTTGTTTTGATGTGGCTGCTTTTGAATTGTGTTAGTTAAGTGTAGCAGAAATGGATGTTAAATGTTTGATTTATAGAAGTTGGAAACGATCACATTCAACAATCAGTATAAATAGTATATATATAGGATAAAAGTTGTCGTTATGGCAATTCCACCAGTAACAAAATTTTGTGCATTGGTCTGGAGATCCATTATGCCTTCCACATTACTAATGCACAACCTTTTTTTTTCCTGTGGTGATTTACATTGCTACTGATGGCAGTTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAATAAAGAG : GTTGCAATAATTTGTAATCACCAGCGTACTGTCTCGAAGTCCCATAGCGTGCAAATTTCAAGGTTGAATAACAAGATAGATGAGTTAAAG : GCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAGAGGAACTTGACCCCTCAAGCGTACAATTGCTGTCCTTGACTCGAGCCTTTCTTCCATTCTTTGTTTTAGTTGCTGACATATAAGTGTAATTGTTTGCAGATTACAGATAAAAATAGACCAAACTAATGTGAAGATTGATAACATAGAGAGGCAAATAGATACTAAAGAAGAGTTGAAAACTGTGGCTTTGGGCACATCAAAAATCAACTATTTGGATCCTAGGATTACTGTGGCATGGTGTAAGCGCCATGAGGTTCCCATTGAAAAG : ATGTTCAACAAGTCTCTTCTAGCAAAGTTTGCCTGGGCGATGGATGTTGAACCTTCCTTCACATTCTAAATTTTTGGTGGTTGTTATAGTGTAGGACATCTCTTCAAAGTCAAGTCTCCCTCCTAATACCCAATTGTTCACATTTCCCCCTTCCTCCCTCCTGGAAAGAGAATAGGAAAAAAGT</gDNA_template>
            <first_frame> L  L  N  I  G  L  K  L  I  A  L  W  R  H  E  *  *  G  F  T  *  P  S  L  I  S  L  G  F  R  W  C  C  F  D  V  A  A  F  E  L  C  *  L  S  V  A  E  M  D  V  K  C  L  I  Y  R  S  W  K  R  S  H  S  T  I  S  I  N  S  I  Y  I  G  *  K  L  S  L  W  Q  F  H  Q  *  Q  N  F  V  H  W  S  G  D  P  L  C  L  P  H  Y  *  C  T  T  F  F  F  P  V  V  I  Y  I  A  T  D  G  S  *  L  S  S  H  K  G  G  S  L  L  I  K  L  R  Y  I  M  W  Q  I  K  R :   L  Q  *  F  V  I  T  S  V  L  S  R  S  P  I  A  C  K  F  Q  G  *  I  T  R  *  M  S  *  R :   L  F  W  K  N  S  K  *  I  W  L  G  P  K  K  G  S  L  R  *  K  A  P  M  A  R  R  R  G  T  *  P  L  K  R  T  I  A  V  L  D  S  S  L  S  S  I  L  C  F  S  C  *  H  I  S  V  I  V  C  R  L  Q  I  K  I  D  Q  T  N  V  K  I  D  N  I  E  R  Q  I  D  T  K  E  E  L  K  T  V  A  L  G  T  S  K  I  N  Y  L  D  P  R  I  T  V  A  W  C  K  R  H  E  V  P  I  E  K  :  M  F  N  K  S  L  L  A  K  F  A  W  A  M  D  V  E  P  S  F  T  F  *  I  F  G  G  C  Y  S  V  G  H  L  F  K  V  K  S  P  S  *  Y  P  I  V  H  I  S  P  F  L  P  P  G  K  R  I  G  K  K  </first_frame>
            <second_frame>  C  *  I  L  D  *  S  *  L  L  C  G  D  M  N  S  E  D  S  H  S  P  A  *  L  A  W  D  L  G  G  V  V  L  M  W  L  L  L  N  C  V  S  *  V  *  Q  K  W  M  L  N  V  *  F  I  E  V  G  N  D  H  I  Q  Q  S  V  *  I  V  Y  I  *  D  K  S  C  R  Y  G  N  S  T  S  N  K  I  L  C  I  G  L  E  I  H  Y  A  F  H  I  T  N  A  Q  P  F  F  F  L  W  *  F  T  L  L  L  M  A  V  D  *  A  H  T  R  G  G  A  C  *  *  N  C  G  I  *  C  G  K  *  R   : G  C  N  N  L  *  S  P  A  Y  C  L  E  V  P  *  R  A  N  F  K  V  E  *  Q  D  R  *  V  K   : G  Y  F  G  R  I  Q  S  R  F  G  S  G  Q  K  R  E  A  S  G  E  R  R  R  W  Q  G  E  E  E  L  D  P  S  S  V  Q  L  L  S  L  T  R  A  F  L  P  F  F  V  L  V  A  D  I  *  V  *  L  F  A  D  Y  R  *  K  *  T  K  L  M  *  R  L  I  T  *  R  G  K  *  I  L  K  K  S  *  K  L  W  L  W  A  H  Q  K  S  T  I  W  I  L  G  L  L  W  H  G  V  S  A  M  R  F  P  L  K  R :   C  S  T  S  L  F  *  Q  S  L  P  G  R  W  M  L  N  L  P  S  H  S  K  F  L  V  V  V  I  V  *  D  I  S  S  K  S  S  L  P  P  N  T  Q  L  F  T  F  P  P  S  S  L  L  E  R  E  *  E  K  S </second_frame>
            <third_frame>   V  E  Y  W  I  E  A  D  C  F  V  E  T  *  I  V  R  I  H  I  A  Q  P  N  *  L  G  I  *  V  V  L  F  *  C  G  C  F  *  I  V  L  V  K  C  S  R  N  G  C  *  M  F  D  L  *  K  L  E  T  I  T  F  N  N  Q  Y  K  *  Y  I  Y  R  I  K  V  V  V  M  A  I  P  P  V  T  K  F  C  A  L  V  W  R  S  I  M  P  S  T  L  L  M  H  N  L  F  F  S  C  G  D  L  H  C  Y  *  W  Q  L  T  K  L  T  Q  G  G  E  L  A  D  K  I  A  V  Y  N  V  A  N  K  E  :  V  A  I  I  C  N  H  Q  R  T  V  S  K  S  H  S  V  Q  I  S  R  L  N  N  K  I  D  E  L  K  :  A  I  L  E  E  F  K  V  D  L  A  R  A  K  K  G  K  P  P  V  K  G  A  D  G  K  A  K  R  N  L  T  P  Q  A  Y  N  C  C  P  *  L  E  P  F  F  H  S  L  F  *  L  L  T  Y  K  C  N  C  L  Q  I  T  D  K  N  R  P  N  *  C  E  D  *  *  H  R  E  A  N  R  Y  *  R  R  V  E  N  C  G  F  G  H  I  K  N  Q  L  F  G  S  *  D  Y  C  G  M  V  *  A  P  *  G  S  H  *  K   : D  V  Q  Q  V  S  S  S  K  V  C  L  G  D  G  C  *  T  F  L  H  I  L  N  F  W  W  L  L  *  C  R  T  S  L  Q  S  Q  V  S  L  L  I  P  N  C  S  H  F  P  L  P  P  S  W  K  E  N  R  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0053G19.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42687" stop="42613"/>
                    <exon start="42526" stop="42437"/>
                    <exon start="42244" stop="42122"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WQLTKLTQGGELADKIAVYNVANKEVAIICNHQRTVSKSHSVQISRLNNKIDELKAILEEFKVDLARAKKGKPPVKGADGKAKRNLTPQAYNCCP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0053G19.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42084" stop="41893"/>
                    <exon start="41772" stop="41704"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HISVIVCRLQIKIDQTNVKIDNIERQIDTKEELKTVALGTSKINYLDPRITVAWCKRHEVPIEKMFNKSLLAKFAWAMDVEPSFTF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="51781" PGL_stop="52220"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51781" e_stop="52220"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="51781" e_stop="52220" e_length="440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51781" stop="52102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51781" stop="52071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51782" stop="52220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTTTAAGTGTATAGTAAGAAGATATATGTTTTTCTCGTTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTACAATTGTATAATTCGCAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGTATGTGTATATACAATTTTCTCTCGCTTTCTACAAAACAGAAACAGAATTATACACTTCTGTGTATAAAGCGAGCGAGGCGAGCGAGAATAGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGAAACTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  F  K  C  I  V  R  R  Y  M  F  F  S  F  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  Y  N  C  I  I  R  N  C  I  I  C  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  V  C  V  Y  T  I  F  S  R  F  L  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  *  R  V  A  S  E  I  F  G  R  E  K  L  A  N  F  S  *  C  L  L  W  S  T  I  K  S  N  P  S  Y  S  I  *  F   </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  L  S  V  *  *  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  T  I  V  *  F  A  I  V  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  Y  V  Y  I  Q  F  S  L  A  F  Y  K  T  E  T  E  L  Y  T  S  V  Y  K  A  S  E  A  S  E  N  R  E  W  R  A  R  F  L  G  E  R  N  W  Q  I  L  A  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  I  P  F  N  L  </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  F  *  V  Y  S  K  K  I  Y  V  F  L  V  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  L  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  S  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  A  R  R  A  R  I  E  S  G  E  R  D  F  W  E  R  E  T  G  K  F  *  L  M  F  A  M  E  H  N  *  I  K  P  *  L  F  H  L  I  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0053G19.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51968" stop="52219"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMFVNCIIKCITRRYTFLYVYIQFSLAFYKTETELYTSVYKASEASENREWRARFLGERNWQILANVCYGAQLNQTLAIPFNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="57571" PGL_stop="53645"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57571" e_stop="57145"/>
            <exon e_start="56165" e_stop="56142"/>
            <exon e_start="54378" e_stop="53645"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="0.998"/>
          <exon-intron don_prob="0.817" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="57571" e_stop="57145" e_length="427"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="57144" i_stop="56166" i_length="979"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56165" e_stop="56142" e_length="24"/>
          </exon>
          <intron i_serial="2" don_prob="0.817" acc_prob="0.999">
            <gDNA_intron_boundary i_start="56141" i_stop="54379" i_length="1763"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54378" e_stop="53645" e_length="734"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57571" stop="57145"/>
              <exon start="56165" stop="56142"/>
              <exon start="54378" stop="54073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57560" stop="57287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57557" stop="57145"/>
              <exon start="56165" stop="56142"/>
              <exon start="54378" stop="54015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57553" stop="57145"/>
              <exon start="56165" stop="56142"/>
              <exon start="54378" stop="54238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57546" stop="57215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57531" stop="57145"/>
              <exon start="56165" stop="56142"/>
              <exon start="54378" stop="54052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57530" stop="57145"/>
              <exon start="56165" stop="56142"/>
              <exon start="54378" stop="54136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57528" stop="57154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57527" stop="57145"/>
              <exon start="56165" stop="56142"/>
              <exon start="54378" stop="53938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57526" stop="57145"/>
              <exon start="56165" stop="56142"/>
              <exon start="54378" stop="54123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57502" stop="57145"/>
              <exon start="56165" stop="56142"/>
              <exon start="54378" stop="54041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57494" stop="57145"/>
              <exon start="56165" stop="56142"/>
              <exon start="54378" stop="54119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57455" stop="57145"/>
              <exon start="56165" stop="56142"/>
              <exon start="54378" stop="53721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57435" stop="57145"/>
              <exon start="56165" stop="56142"/>
              <exon start="54378" stop="53823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57428" stop="57145"/>
              <exon start="56165" stop="56142"/>
              <exon start="54378" stop="54132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57410" stop="57145"/>
              <exon start="56165" stop="56142"/>
              <exon start="54378" stop="54125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57405" stop="57145"/>
              <exon start="56165" stop="56142"/>
              <exon start="54378" stop="53721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57402" stop="57145"/>
              <exon start="56165" stop="56142"/>
              <exon start="54378" stop="53896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57402" stop="57145"/>
              <exon start="56165" stop="56142"/>
              <exon start="54378" stop="53896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57387" stop="57145"/>
              <exon start="56165" stop="56142"/>
              <exon start="54378" stop="54140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57387" stop="57145"/>
              <exon start="56165" stop="56142"/>
              <exon start="54378" stop="54210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57380" stop="57145"/>
              <exon start="56165" stop="56142"/>
              <exon start="54378" stop="53735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57317" stop="57145"/>
              <exon start="56165" stop="56142"/>
              <exon start="54378" stop="53743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54356" stop="53727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54306" stop="53676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54220" stop="53646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54207" stop="53645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54200" stop="53867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53988" stop="53737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGTCGGCGGATCTGGGCTAAATTCCCAAACGCGTCACAGCAGTTGAAAAGCGGAGAAAAAAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAG : GTTTGAGCAATGTTTCTTTGACAG : ATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAGATTGCCATTTGTTCCACTATAAGGCAAAGCCTTTCCATATATCCTGCTGAGTTGAAATTCCACTAGTAAAAGTTTGAGTGAATATTGCAATCAACTGCCTTACAAATTTTCATCTGGCTGAGTGGCATTTGTCAACATTTCTATATCTATATATGGGTGAAGAAGATTAACTGTGAAGTGTCACAAC</gDNA_template>
            <first_frame> A  S  A  D  L  G  *  I  P  K  R  V  T  A  V  E  K  R  R  K  K  K  Q  L  I  F  L  P  H  S  H  S  S  A  I  G  L  H  K  *  A  Q  N  *  Q  F  N  S  K  L  F  F  P  T  S  P  F  T  G  Q  *  K  K  Q  T  E  R  P  M  A  L  N  Q  A  G  R  S  S  P  C  S  P  R  V  L  K  S  V  L  G  L  M  A  I  S  L  A  A  Y  I  L  G  P  P  L  Y  W  H  L  M  E  G  L  V  A  V  S  R  S  S  S  V  T  T  C  P  P  C  N  C  D  C  N  S  E  P  F  F  F  I  P  P   : G  L  S  N  V  S  L  T   : D  C  A  K  R  D  P  E  V  G  E  D  T  E  K  N  F  A  D  L  L  S  E  E  L  K  L  R  E  A  E  A  S  E  N  Q  R  K  A  D  M  A  L  L  E  A  K  K  L  T  S  Q  Y  M  K  E  A  D  K  C  N  S  G  M  E  T  C  E  E  A  R  E  K  A  E  V  L  L  L  A  Q  K  K  M  T  A  T  W  E  M  R  A  R  Q  K  G  W  K  E  G  A  A  K  S  R  T  Q  S  Q  G  N  V  Q  T  M  *  H  A  H  G  L  K  *  L  V  S  T  *  S  D  A  K  F  R  C  N  K  V  V  Y  N  *  V  P  A  Q  K  C  V  S  T  *  M  D  S  I  Y  F  E  S  Y  A  R  F  *  F  R  V  H  Y  K  I  S  L  S  I  C  V  V  I  *  N  R  L  P  F  V  P  L  *  G  K  A  F  P  Y  I  L  L  S  *  N  S  T  S  K  S  L  S  E  Y  C  N  Q  L  P  Y  K  F  S  S  G  *  V  A  F  V  N  I  S  I  S  I  Y  G  *  R  R  L  T  V  K  C  H  N </first_frame>
            <second_frame>  R  R  R  I  W  A  K  F  P  N  A  S  Q  Q  L  K  S  G  E  K  K  N  S  *  S  F  F  H  T  L  I  H  L  L  L  V  S  I  S  K  H  K  T  N  N  L  T  Q  N  C  F  F  Q  L  L  R  L  L  A  S  R  K  S  K  Q  N  D  Q  W  R  *  I  K  Q  E  D  H  H  H  V  V  L  G  C  *  N  L  Y  W  V  *  W  Q  L  V  W  Q  P  I  F  W  V  L  L  C  I  G  T  *  W  K  V  *  L  L  L  A  V  L  L  L  L  L  L  A  L  L  V  I  V  T  A  I  R  N  P  S  F  L  F  P  Q  :  V  *  A  M  F  L  *  Q  :  I  V  L  S  V  I  Q  K  L  V  K  T  R  K  K  T  L  L  I  C  C  L  R  N  L  N  C  E  K  L  K  P  Q  K  I  S  G  R  L  T  W  H  F  L  K  Q  K  S  *  H  P  N  I  *  K  K  Q  T  N  A  I  L  E  W  R  H  V  K  R  Q  G  K  K  L  R  F  F  Y  W  H  K  R  K  *  L  L  H  G  R  *  G  R  V  K  K  D  G  K  K  G  Q  P  S  L  E  L  S  L  R  G  M  Y  R  P  C  N  M  R  M  V  S  S  S  L  S  R  L  D  L  M  P  S  S  G  A  T  K  L  S  I  I  E  S  Q  L  K  N  V  L  A  H  E  W  I  P  F  I  L  N  H  M  H  D  F  S  L  E  F  T  I  R  Y  P  S  L  Y  A  *  S  S  E  T  D  C  H  L  F  H  Y  K  A  K  P  F  H  I  S  C  *  V  E  I  P  L  V  K  V  *  V  N  I  A  I  N  C  L  T  N  F  H  L  A  E  W  H  L  S  T  F  L  Y  L  Y  M  G  E  E  D  *  L  *  S  V  T   </second_frame>
            <third_frame>   V  G  G  S  G  L  N  S  Q  T  R  H  S  S  *  K  A  E  K  K  K  T  A  D  L  S  S  T  L  S  F  I  C  Y  W  S  P  *  V  S  T  K  L  T  I  *  L  K  I  V  F  S  N  F  S  V  Y  W  P  V  E  K  A  N  R  T  T  N  G  V  E  S  S  R  K  I  I  T  M  *  S  *  G  V  E  I  C  I  G  S  N  G  N  *  F  G  S  L  Y  F  G  S  S  F  V  L  A  L  D  G  R  F  S  C  C  *  P  F  F  F  C  Y  Y  L  P  S  L  *  L  *  L  Q  F  G  T  L  L  F  Y  S  P  R :   F  E  Q  C  F  F  D  R :   L  C  *  A  *  S  R  S  W  *  R  H  G  K  K  L  C  *  F  V  V  *  G  T  *  T  A  R  S  *  S  L  R  K  S  A  E  G  *  H  G  T  S  *  S  K  K  V  D  I  P  I  Y  E  R  S  R  Q  M  Q  F  W  N  G  D  M  *  R  G  K  G  K  S  *  G  S  F  I  G  T  K  E  N  D  C  Y  M  G  D  E  G  A  S  K  R  M  E  R  R  G  S  Q  V  S  N  S  V  S  G  E  C  T  D  H  V  T  C  A  W  S  Q  V  A  C  L  D  L  I  *  C  Q  V  P  V  Q  Q  S  C  L  *  L  S  P  S  S  K  M  C  *  H  M  N  G  F  H  L  F  *  I  I  C  T  I  L  V  *  S  S  L  *  D  I  P  L  Y  M  R  S  H  L  K  Q  I  A  I  C  S  T  I  R  Q  S  L  S  I  Y  P  A  E  L  K  F  H  *  *  K  F  E  *  I  L  Q  S  T  A  L  Q  I  F  I  W  L  S  G  I  C  Q  H  F  Y  I  Y  I  W  V  K  K  I  N  C  E  V  S  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0053G19.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57388" stop="57145"/>
                    <exon start="56165" stop="56142"/>
                    <exon start="54378" stop="54032"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKQTERPMALNQAGRSSPCSPRVLKSVLGLMAISLAAYILGPPLYWHLMEGLVAVSRSSSVTTCPPCNCDCNSEPFFFIPPGLSNVSLTDCAKRDPEVGEDTEKNFADLLSEELKLREAEASENQRKADMALLEAKKLTSQYMKEADKCNSGMETCEEAREKAEVLLLAQKKMTATWEMRARQKGWKEGAAKSRTQSQGNVQTM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="57560" e_stop="57145"/>
            <exon e_start="54378" e_stop="53645"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57560" e_stop="57145" e_length="416"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57144" i_stop="54379" i_length="2766"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54378" e_stop="53645" e_length="734"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57560" stop="57287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57546" stop="57215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57528" stop="57154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57402" stop="57145"/>
              <exon start="54378" stop="54321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54356" stop="53727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54306" stop="53676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54220" stop="53646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54207" stop="53645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54200" stop="53867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53988" stop="53737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTGGGCTAAATTCCCAAACGCGTCACAGCAGTTGAAAAGCGGAGAAAAAAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAG : ATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAGATTGCCATTTGTTCCACTATAAGGCAAAGCCTTTCCATATATCCTGCTGAGTTGAAATTCCACTAGTAAAAGTTTGAGTGAATATTGCAATCAACTGCCTTACAAATTTTCATCTGGCTGAGTGGCATTTGTCAACATTTCTATATCTATATATGGGTGAAGAAGATTAACTGTGAAGTGTCACAAC</gDNA_template>
            <first_frame> S  G  L  N  S  Q  T  R  H  S  S  *  K  A  E  K  K  K  T  A  D  L  S  S  T  L  S  F  I  C  Y  W  S  P  *  V  S  T  K  L  T  I  *  L  K  I  V  F  S  N  F  S  V  Y  W  P  V  E  K  A  N  R  T  T  N  G  V  E  S  S  R  K  I  I  T  M  *  S  *  G  V  E  I  C  I  G  S  N  G  N  *  F  G  S  L  Y  F  G  S  S  F  V  L  A  L  D  G  R  F  S  C  C  *  P  F  F  F  C  Y  Y  L  P  S  L  *  L  *  L  Q  F  G  T  L  L  F  Y  S  P  R :   L  C  *  A  *  S  R  S  W  *  R  H  G  K  K  L  C  *  F  V  V  *  G  T  *  T  A  R  S  *  S  L  R  K  S  A  E  G  *  H  G  T  S  *  S  K  K  V  D  I  P  I  Y  E  R  S  R  Q  M  Q  F  W  N  G  D  M  *  R  G  K  G  K  S  *  G  S  F  I  G  T  K  E  N  D  C  Y  M  G  D  E  G  A  S  K  R  M  E  R  R  G  S  Q  V  S  N  S  V  S  G  E  C  T  D  H  V  T  C  A  W  S  Q  V  A  C  L  D  L  I  *  C  Q  V  P  V  Q  Q  S  C  L  *  L  S  P  S  S  K  M  C  *  H  M  N  G  F  H  L  F  *  I  I  C  T  I  L  V  *  S  S  L  *  D  I  P  L  Y  M  R  S  H  L  K  Q  I  A  I  C  S  T  I  R  Q  S  L  S  I  Y  P  A  E  L  K  F  H  *  *  K  F  E  *  I  L  Q  S  T  A  L  Q  I  F  I  W  L  S  G  I  C  Q  H  F  Y  I  Y  I  W  V  K  K  I  N  C  E  V  S  Q  </first_frame>
            <second_frame>  L  G  *  I  P  K  R  V  T  A  V  E  K  R  R  K  K  K  Q  L  I  F  L  P  H  S  H  S  S  A  I  G  L  H  K  *  A  Q  N  *  Q  F  N  S  K  L  F  F  P  T  S  P  F  T  G  Q  *  K  K  Q  T  E  R  P  M  A  L  N  Q  A  G  R  S  S  P  C  S  P  R  V  L  K  S  V  L  G  L  M  A  I  S  L  A  A  Y  I  L  G  P  P  L  Y  W  H  L  M  E  G  L  V  A  V  S  R  S  S  S  V  T  T  C  P  P  C  N  C  D  C  N  S  E  P  F  F  F  I  P  P   : D  C  A  K  R  D  P  E  V  G  E  D  T  E  K  N  F  A  D  L  L  S  E  E  L  K  L  R  E  A  E  A  S  E  N  Q  R  K  A  D  M  A  L  L  E  A  K  K  L  T  S  Q  Y  M  K  E  A  D  K  C  N  S  G  M  E  T  C  E  E  A  R  E  K  A  E  V  L  L  L  A  Q  K  K  M  T  A  T  W  E  M  R  A  R  Q  K  G  W  K  E  G  A  A  K  S  R  T  Q  S  Q  G  N  V  Q  T  M  *  H  A  H  G  L  K  *  L  V  S  T  *  S  D  A  K  F  R  C  N  K  V  V  Y  N  *  V  P  A  Q  K  C  V  S  T  *  M  D  S  I  Y  F  E  S  Y  A  R  F  *  F  R  V  H  Y  K  I  S  L  S  I  C  V  V  I  *  N  R  L  P  F  V  P  L  *  G  K  A  F  P  Y  I  L  L  S  *  N  S  T  S  K  S  L  S  E  Y  C  N  Q  L  P  Y  K  F  S  S  G  *  V  A  F  V  N  I  S  I  S  I  Y  G  *  R  R  L  T  V  K  C  H  N </second_frame>
            <third_frame>   W  A  K  F  P  N  A  S  Q  Q  L  K  S  G  E  K  K  N  S  *  S  F  F  H  T  L  I  H  L  L  L  V  S  I  S  K  H  K  T  N  N  L  T  Q  N  C  F  F  Q  L  L  R  L  L  A  S  R  K  S  K  Q  N  D  Q  W  R  *  I  K  Q  E  D  H  H  H  V  V  L  G  C  *  N  L  Y  W  V  *  W  Q  L  V  W  Q  P  I  F  W  V  L  L  C  I  G  T  *  W  K  V  *  L  L  L  A  V  L  L  L  L  L  L  A  L  L  V  I  V  T  A  I  R  N  P  S  F  L  F  P  Q  :  I  V  L  S  V  I  Q  K  L  V  K  T  R  K  K  T  L  L  I  C  C  L  R  N  L  N  C  E  K  L  K  P  Q  K  I  S  G  R  L  T  W  H  F  L  K  Q  K  S  *  H  P  N  I  *  K  K  Q  T  N  A  I  L  E  W  R  H  V  K  R  Q  G  K  K  L  R  F  F  Y  W  H  K  R  K  *  L  L  H  G  R  *  G  R  V  K  K  D  G  K  K  G  Q  P  S  L  E  L  S  L  R  G  M  Y  R  P  C  N  M  R  M  V  S  S  S  L  S  R  L  D  L  M  P  S  S  G  A  T  K  L  S  I  I  E  S  Q  L  K  N  V  L  A  H  E  W  I  P  F  I  L  N  H  M  H  D  F  S  L  E  F  T  I  R  Y  P  S  L  Y  A  *  S  S  E  T  D  C  H  L  F  H  Y  K  A  K  P  F  H  I  S  C  *  V  E  I  P  L  V  K  V  *  V  N  I  A  I  N  C  L  T  N  F  H  L  A  E  W  H  L  S  T  F  L  Y  L  Y  M  G  E  E  D  *  L  *  S  V  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0053G19.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57388" stop="57145"/>
                    <exon start="54378" stop="54032"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKQTERPMALNQAGRSSPCSPRVLKSVLGLMAISLAAYILGPPLYWHLMEGLVAVSRSSSVTTCPPCNCDCNSEPFFFIPPDCAKRDPEVGEDTEKNFADLLSEELKLREAEASENQRKADMALLEAKKLTSQYMKEADKCNSGMETCEEAREKAEVLLLAQKKMTATWEMRARQKGWKEGAAKSRTQSQGNVQTM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="56171" e_stop="56142"/>
            <exon e_start="54378" e_stop="53645"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.817" acc_prob="0.999" e_score="0.900"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="56171" e_stop="56142" e_length="30"/>
          </exon>
          <intron i_serial="1" don_prob="0.817" acc_prob="0.999">
            <gDNA_intron_boundary i_start="56141" i_stop="54379" i_length="1763"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54378" e_stop="53645" e_length="734"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56171" stop="56142"/>
              <exon start="54378" stop="53662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54356" stop="53727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54306" stop="53676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54220" stop="53646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54207" stop="53645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54200" stop="53867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53988" stop="53737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGCAGGTTTGAGCAATGTTTCTTTGACAG : ATTGTGCTAAGCGTGATCCAGAAGTTGGTGAAGACACGGAAAAAAACTTTGCTGATTTGTTGTCTGAGGAACTTAAACTGCGAGAAGCTGAAGCCTCAGAAAATCAGCGGAAGGCTGACATGGCACTTCTTGAAGCAAAAAAGTTGACATCCCAATATATGAAAGAAGCAGACAAATGCAATTCTGGAATGGAGACATGTGAAGAGGCAAGGGAAAAAGCTGAGGTTCTTTTATTGGCACAAAAGAAAATGACTGCTACATGGGAGATGAGGGCGCGTCAAAAAGGATGGAAAGAAGGGGCAGCCAAGTCTCGAACTCAGTCTCAGGGGAATGTACAGACCATGTAACATGCGCATGGTCTCAAGTAGCTTGTCTCGACTTGATCTGATGCCAAGTTCCGGTGCAACAAAGTTGTCTATAATTGAGTCCCAGCTCAAAAATGTGTTAGCACATGAATGGATTCCATTTATTTTGAATCATATGCACGATTTTAGTTTAGAGTTCACTATAAGATATCCCTCTCTATATGCGTAGTCATCTGAAACAGATTGCCATTTGTTCCACTATAAGGCAAAGCCTTTCCATATATCCTGCTGAGTTGAAATTCCACTAGTAAAAGTTTGAGTGAATATTGCAATCAACTGCCTTACAAATTTTCATCTGGCTGAGTGGCATTTGTCAACATTTCTATATCTATATATGGGTGAAGAAGATTAACTGTGAAGTGTCACAAC</gDNA_template>
            <first_frame> L  Q  V  *  A  M  F  L  *  Q  :  I  V  L  S  V  I  Q  K  L  V  K  T  R  K  K  T  L  L  I  C  C  L  R  N  L  N  C  E  K  L  K  P  Q  K  I  S  G  R  L  T  W  H  F  L  K  Q  K  S  *  H  P  N  I  *  K  K  Q  T  N  A  I  L  E  W  R  H  V  K  R  Q  G  K  K  L  R  F  F  Y  W  H  K  R  K  *  L  L  H  G  R  *  G  R  V  K  K  D  G  K  K  G  Q  P  S  L  E  L  S  L  R  G  M  Y  R  P  C  N  M  R  M  V  S  S  S  L  S  R  L  D  L  M  P  S  S  G  A  T  K  L  S  I  I  E  S  Q  L  K  N  V  L  A  H  E  W  I  P  F  I  L  N  H  M  H  D  F  S  L  E  F  T  I  R  Y  P  S  L  Y  A  *  S  S  E  T  D  C  H  L  F  H  Y  K  A  K  P  F  H  I  S  C  *  V  E  I  P  L  V  K  V  *  V  N  I  A  I  N  C  L  T  N  F  H  L  A  E  W  H  L  S  T  F  L  Y  L  Y  M  G  E  E  D  *  L  *  S  V  T   </first_frame>
            <second_frame>  C  R  F  E  Q  C  F  F  D  R :   L  C  *  A  *  S  R  S  W  *  R  H  G  K  K  L  C  *  F  V  V  *  G  T  *  T  A  R  S  *  S  L  R  K  S  A  E  G  *  H  G  T  S  *  S  K  K  V  D  I  P  I  Y  E  R  S  R  Q  M  Q  F  W  N  G  D  M  *  R  G  K  G  K  S  *  G  S  F  I  G  T  K  E  N  D  C  Y  M  G  D  E  G  A  S  K  R  M  E  R  R  G  S  Q  V  S  N  S  V  S  G  E  C  T  D  H  V  T  C  A  W  S  Q  V  A  C  L  D  L  I  *  C  Q  V  P  V  Q  Q  S  C  L  *  L  S  P  S  S  K  M  C  *  H  M  N  G  F  H  L  F  *  I  I  C  T  I  L  V  *  S  S  L  *  D  I  P  L  Y  M  R  S  H  L  K  Q  I  A  I  C  S  T  I  R  Q  S  L  S  I  Y  P  A  E  L  K  F  H  *  *  K  F  E  *  I  L  Q  S  T  A  L  Q  I  F  I  W  L  S  G  I  C  Q  H  F  Y  I  Y  I  W  V  K  K  I  N  C  E  V  S  Q  </second_frame>
            <third_frame>   A  G  L  S  N  V  S  L  T   : D  C  A  K  R  D  P  E  V  G  E  D  T  E  K  N  F  A  D  L  L  S  E  E  L  K  L  R  E  A  E  A  S  E  N  Q  R  K  A  D  M  A  L  L  E  A  K  K  L  T  S  Q  Y  M  K  E  A  D  K  C  N  S  G  M  E  T  C  E  E  A  R  E  K  A  E  V  L  L  L  A  Q  K  K  M  T  A  T  W  E  M  R  A  R  Q  K  G  W  K  E  G  A  A  K  S  R  T  Q  S  Q  G  N  V  Q  T  M  *  H  A  H  G  L  K  *  L  V  S  T  *  S  D  A  K  F  R  C  N  K  V  V  Y  N  *  V  P  A  Q  K  C  V  S  T  *  M  D  S  I  Y  F  E  S  Y  A  R  F  *  F  R  V  H  Y  K  I  S  L  S  I  C  V  V  I  *  N  R  L  P  F  V  P  L  *  G  K  A  F  P  Y  I  L  L  S  *  N  S  T  S  K  S  L  S  E  Y  C  N  Q  L  P  Y  K  F  S  S  G  *  V  A  F  V  N  I  S  I  S  I  Y  G  *  R  R  L  T  V  K  C  H  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0053G19.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56169" stop="56142"/>
                    <exon start="54378" stop="54032"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGLSNVSLTDCAKRDPEVGEDTEKNFADLLSEELKLREAEASENQRKADMALLEAKKLTSQYMKEADKCNSGMETCEEAREKAEVLLLAQKKMTATWEMRARQKGWKEGAAKSRTQSQGNVQTM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="57560" e_stop="56727"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57560" e_stop="56727" e_length="834"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57560" stop="57287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57546" stop="57215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57528" stop="57093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57528" stop="57106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57528" stop="57154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57497" stop="56727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTGGGCTAAATTCCCAAACGCGTCACAGCAGTTGAAAAGCGGAGAAAAAAAAAACAGCTGATCTTTCTTCCACACTCTCATTCATCTGCTATTGGTCTCCATAAGTAAGCACAAAACTAACAATTTAACTCAAAATTGTTTTTTCCAACTTCTCCGTTTACTGGCCAGTAGAAAAAGCAAACAGAACGACCAATGGCGTTGAATCAAGCAGGAAGATCATCACCATGTAGTCCTAGGGTGTTGAAATCTGTATTGGGTCTAATGGCAATTAGTTTGGCAGCCTATATTTTGGGTCCTCCTTTGTATTGGCACTTGATGGAAGGTTTAGTTGCTGTTAGCCGTTCTTCTTCTGTTACTACTTGCCCTCCTTGTAATTGTGACTGCAATTCGGAACCCTTCTTTTTTATTCCCCCAGGTATACATTTTCCCTGATCTGCTGTAATATGTGCCATTAACTGTCAAGAATGGTCTTTTTGTGCGGATATGGTAATTTAAAGAACCCTTTTTTATTTGCTTAAAGACCCATTTGTGAATCTGGTGGTTTAATTGAAAGATCTTAAAAAAAATTGTACCTTTGTTGGTTCTGGCTTTGGATCTGCTTTCTAAAGGAAGCAGAATCCAATTGATTGTGCTTTATGTGATATGCTGCGTATATTGAATCATAATCCTGCTAAAATGATACAGTGATTTGAAATTGTAAGTTTATACTTCTAATTTCAGGCTAAATTGGGAAGTTTACACTGTTTGAAGTTCAATTATTGCAGATTGTTAGTTGTTGTTACTACTGTTAATCATTTTTGTTCTTTTTATATTTCAGGCAATATTTCCATGGC</gDNA_template>
            <first_frame> S  G  L  N  S  Q  T  R  H  S  S  *  K  A  E  K  K  K  T  A  D  L  S  S  T  L  S  F  I  C  Y  W  S  P  *  V  S  T  K  L  T  I  *  L  K  I  V  F  S  N  F  S  V  Y  W  P  V  E  K  A  N  R  T  T  N  G  V  E  S  S  R  K  I  I  T  M  *  S  *  G  V  E  I  C  I  G  S  N  G  N  *  F  G  S  L  Y  F  G  S  S  F  V  L  A  L  D  G  R  F  S  C  C  *  P  F  F  F  C  Y  Y  L  P  S  L  *  L  *  L  Q  F  G  T  L  L  F  Y  S  P  R  Y  T  F  S  L  I  C  C  N  M  C  H  *  L  S  R  M  V  F  L  C  G  Y  G  N  L  K  N  P  F  L  F  A  *  R  P  I  C  E  S  G  G  L  I  E  R  S  *  K  K  L  Y  L  C  W  F  W  L  W  I  C  F  L  K  E  A  E  S  N  *  L  C  F  M  *  Y  A  A  Y  I  E  S  *  S  C  *  N  D  T  V  I  *  N  C  K  F  I  L  L  I  S  G  *  I  G  K  F  T  L  F  E  V  Q  L  L  Q  I  V  S  C  C  Y  Y  C  *  S  F  L  F  F  L  Y  F  R  Q  Y  F  H  G </first_frame>
            <second_frame>  L  G  *  I  P  K  R  V  T  A  V  E  K  R  R  K  K  K  Q  L  I  F  L  P  H  S  H  S  S  A  I  G  L  H  K  *  A  Q  N  *  Q  F  N  S  K  L  F  F  P  T  S  P  F  T  G  Q  *  K  K  Q  T  E  R  P  M  A  L  N  Q  A  G  R  S  S  P  C  S  P  R  V  L  K  S  V  L  G  L  M  A  I  S  L  A  A  Y  I  L  G  P  P  L  Y  W  H  L  M  E  G  L  V  A  V  S  R  S  S  S  V  T  T  C  P  P  C  N  C  D  C  N  S  E  P  F  F  F  I  P  P  G  I  H  F  P  *  S  A  V  I  C  A  I  N  C  Q  E  W  S  F  C  A  D  M  V  I  *  R  T  L  F  Y  L  L  K  D  P  F  V  N  L  V  V  *  L  K  D  L  K  K  N  C  T  F  V  G  S  G  F  G  S  A  F  *  R  K  Q  N  P  I  D  C  A  L  C  D  M  L  R  I  L  N  H  N  P  A  K  M  I  Q  *  F  E  I  V  S  L  Y  F  *  F  Q  A  K  L  G  S  L  H  C  L  K  F  N  Y  C  R  L  L  V  V  V  T  T  V  N  H  F  C  S  F  Y  I  S  G  N  I  S  M   </second_frame>
            <third_frame>   W  A  K  F  P  N  A  S  Q  Q  L  K  S  G  E  K  K  N  S  *  S  F  F  H  T  L  I  H  L  L  L  V  S  I  S  K  H  K  T  N  N  L  T  Q  N  C  F  F  Q  L  L  R  L  L  A  S  R  K  S  K  Q  N  D  Q  W  R  *  I  K  Q  E  D  H  H  H  V  V  L  G  C  *  N  L  Y  W  V  *  W  Q  L  V  W  Q  P  I  F  W  V  L  L  C  I  G  T  *  W  K  V  *  L  L  L  A  V  L  L  L  L  L  L  A  L  L  V  I  V  T  A  I  R  N  P  S  F  L  F  P  Q  V  Y  I  F  P  D  L  L  *  Y  V  P  L  T  V  K  N  G  L  F  V  R  I  W  *  F  K  E  P  F  F  I  C  L  K  T  H  L  *  I  W  W  F  N  *  K  I  L  K  K  I  V  P  L  L  V  L  A  L  D  L  L  S  K  G  S  R  I  Q  L  I  V  L  Y  V  I  C  C  V  Y  *  I  I  I  L  L  K  *  Y  S  D  L  K  L  *  V  Y  T  S  N  F  R  L  N  W  E  V  Y  T  V  *  S  S  I  I  A  D  C  *  L  L  L  L  L  L  I  I  F  V  L  F  I  F  Q  A  I  F  P  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0053G19.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57388" stop="57128"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKQTERPMALNQAGRSSPCSPRVLKSVLGLMAISLAAYILGPPLYWHLMEGLVAVSRSSSVTTCPPCNCDCNSEPFFFIPPGIHFP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="54931" e_stop="54390"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54931" e_stop="54390" e_length="542"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54931" stop="54390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214707" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAGTTGTGAAAATTATCTGAGGAGACGTGTAACATGTATTATTATAAATCTGAGATTTTTTGGTTTGAAATCTGAAAATGGACGAAAAAGGAAGAGTTCTTATGAGTTTATCTGATGCATCTAATCTCTGTTGTGGTAGAGCATATTGTATGACTTCAGATGAGACCTTTTAGTACTTGGTAGGTTAGGAACTACTGTTAGTTTAAATAGGACATTTTGCAGAACTTTGTTGTTGTAAAAACATTTATTTAGTTGCATCCCATAAACGACCATCTCAAGTATGATGGTTGAGTTCGAGGATGGCATGATTTCTTTGATTCTGTAATGAGTTGAAACTGTGCAAATATTTGGATGATCTGCAAGACTGCAAATGCTTGACATCTTAATAAGCTGAATATGTTCAAAATATCGTATAGTTAATGTGAACCTCCTATATTTTAGTTTTGTTGCGTTGAAGTAGCCATTTACTCTTTCTTTTTATCATTAAAATCTATATTTTGTGACTTGACATCTAAAATCTTGGATTTGCCTTCTTATTCA</gDNA_template>
            <first_frame> F  S  C  E  N  Y  L  R  R  R  V  T  C  I  I  I  N  L  R  F  F  G  L  K  S  E  N  G  R  K  R  K  S  S  Y  E  F  I  *  C  I  *  S  L  L  W  *  S  I  L  Y  D  F  R  *  D  L  L  V  L  G  R  L  G  T  T  V  S  L  N  R  T  F  C  R  T  L  L  L  *  K  H  L  F  S  C  I  P  *  T  T  I  S  S  M  M  V  E  F  E  D  G  M  I  S  L  I  L  *  *  V  E  T  V  Q  I  F  G  *  S  A  R  L  Q  M  L  D  I  L  I  S  *  I  C  S  K  Y  R  I  V  N  V  N  L  L  Y  F  S  F  V  A  L  K  *  P  F  T  L  S  F  Y  H  *  N  L  Y  F  V  T  *  H  L  K  S  W  I  C  L  L  I   </first_frame>
            <second_frame>  L  V  V  K  I  I  *  G  D  V  *  H  V  L  L  *  I  *  D  F  L  V  *  N  L  K  M  D  E  K  G  R  V  L  M  S  L  S  D  A  S  N  L  C  C  G  R  A  Y  C  M  T  S  D  E  T  F  *  Y  L  V  G  *  E  L  L  L  V  *  I  G  H  F  A  E  L  C  C  C  K  N  I  Y  L  V  A  S  H  K  R  P  S  Q  V  *  W  L  S  S  R  M  A  *  F  L  *  F  C  N  E  L  K  L  C  K  Y  L  D  D  L  Q  D  C  K  C  L  T  S  *  *  A  E  Y  V  Q  N  I  V  *  L  M  *  T  S  Y  I  L  V  L  L  R  *  S  S  H  L  L  F  L  F  I  I  K  I  Y  I  L  *  L  D  I  *  N  L  G  F  A  F  L  F  </second_frame>
            <third_frame>   *  L  *  K  L  S  E  E  T  C  N  M  Y  Y  Y  K  S  E  I  F  W  F  E  I  *  K  W  T  K  K  E  E  F  L  *  V  Y  L  M  H  L  I  S  V  V  V  E  H  I  V  *  L  Q  M  R  P  F  S  T  W  *  V  R  N  Y  C  *  F  K  *  D  I  L  Q  N  F  V  V  V  K  T  F  I  *  L  H  P  I  N  D  H  L  K  Y  D  G  *  V  R  G  W  H  D  F  F  D  S  V  M  S  *  N  C  A  N  I  W  M  I  C  K  T  A  N  A  *  H  L  N  K  L  N  M  F  K  I  S  Y  S  *  C  E  P  P  I  F  *  F  C  C  V  E  V  A  I  Y  S  F  F  L  S  L  K  S  I  F  C  D  L  T  S  K  I  L  D  L  P  S  Y  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0053G19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="53722" PGL_stop="54300"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53722" e_stop="54300"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53722" e_stop="54300" e_length="579"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53722" stop="54300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATTTGTAAGGCAGTTGATTGCAATATTCACTCAAACTTTTACTAGTGGAATTTCAACTCAGCAGGATATATGGAAAGGCTTTGCCTTATAGTGGAACAAATGGCAATCTGTTTCAGATGACTACGCATATAGAGAGGGATATCTTATAGTGAACTCTAAACTAAAATCGTGCATATGATTCAAAATAAATGGAATCCATTCATGTGCTAACACATTTTTGAGCTGGGACTCAATTATAGACAACTTTGTTGCACCGGAACTTGGCATCAGATCAAGTCGAGACAAGCTACTTGAGACCATGCGCATGTTACATGGTCTGTACATTCCCCTGAGACTGAGTTCGAGACTTGGCTGCCCCTTCTTTCCATCCTTTTTGACGCGCCCTCATCTCCCATGTAGCAGTCATTTTCTTTTGTGCCAATAAAAGAACCTCAGCTTTTTCCCTTGCCTCTTCACATGTCTCCATTCCAGAATTGCATTTGTCTGCTTCTTTCATATATTGGGATGTCAACTTTTTTGCTTCAAGAAGTGCCATGTCAGCCTTCCGCTGATTTTCTGAGGCTTCAGCTTCTCGCA</gDNA_template>
            <first_frame> K  I  C  K  A  V  D  C  N  I  H  S  N  F  Y  *  W  N  F  N  S  A  G  Y  M  E  R  L  C  L  I  V  E  Q  M  A  I  C  F  R  *  L  R  I  *  R  G  I  S  Y  S  E  L  *  T  K  I  V  H  M  I  Q  N  K  W  N  P  F  M  C  *  H  I  F  E  L  G  L  N  Y  R  Q  L  C  C  T  G  T  W  H  Q  I  K  S  R  Q  A  T  *  D  H  A  H  V  T  W  S  V  H  S  P  E  T  E  F  E  T  W  L  P  L  L  S  I  L  F  D  A  P  S  S  P  M  *  Q  S  F  S  F  V  P  I  K  E  P  Q  L  F  P  L  P  L  H  M  S  P  F  Q  N  C  I  C  L  L  L  S  Y  I  G  M  S  T  F  L  L  Q  E  V  P  C  Q  P  S  A  D  F  L  R  L  Q  L  L  A </first_frame>
            <second_frame>  K  F  V  R  Q  L  I  A  I  F  T  Q  T  F  T  S  G  I  S  T  Q  Q  D  I  W  K  G  F  A  L  *  W  N  K  W  Q  S  V  S  D  D  Y  A  Y  R  E  G  Y  L  I  V  N  S  K  L  K  S  C  I  *  F  K  I  N  G  I  H  S  C  A  N  T  F  L  S  W  D  S  I  I  D  N  F  V  A  P  E  L  G  I  R  S  S  R  D  K  L  L  E  T  M  R  M  L  H  G  L  Y  I  P  L  R  L  S  S  R  L  G  C  P  F  F  P  S  F  L  T  R  P  H  L  P  C  S  S  H  F  L  L  C  Q  *  K  N  L  S  F  F  P  C  L  F  T  C  L  H  S  R  I  A  F  V  C  F  F  H  I  L  G  C  Q  L  F  C  F  K  K  C  H  V  S  L  P  L  I  F  *  G  F  S  F  S   </second_frame>
            <third_frame>   N  L  *  G  S  *  L  Q  Y  S  L  K  L  L  L  V  E  F  Q  L  S  R  I  Y  G  K  A  L  P  Y  S  G  T  N  G  N  L  F  Q  M  T  T  H  I  E  R  D  I  L  *  *  T  L  N  *  N  R  A  Y  D  S  K  *  M  E  S  I  H  V  L  T  H  F  *  A  G  T  Q  L  *  T  T  L  L  H  R  N  L  A  S  D  Q  V  E  T  S  Y  L  R  P  C  A  C  Y  M  V  C  T  F  P  *  D  *  V  R  D  L  A  A  P  S  F  H  P  F  *  R  A  L  I  S  H  V  A  V  I  F  F  C  A  N  K  R  T  S  A  F  S  L  A  S  S  H  V  S  I  P  E  L  H  L  S  A  S  F  I  Y  W  D  V  N  F  F  A  S  R  S  A  M  S  A  F  R  *  F  S  E  A  S  A  S  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0053G19.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53903" stop="54148"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKINGIHSCANTFLSWDSIIDNFVAPELGIRSSRDKLLETMRMLHGLYIPLRLSSRLGCPFFPSFLTRPHLPCSSHFLLCQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="65628" PGL_stop="67050"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65628" e_stop="65661"/>
            <exon e_start="65760" e_stop="66007"/>
            <exon e_start="66514" e_stop="66613"/>
            <exon e_start="66770" e_stop="66894"/>
            <exon e_start="66976" e_stop="67050"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.575" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.027" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.937" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65628" e_stop="65661" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.575">
            <gDNA_intron_boundary i_start="65662" i_stop="65759" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65760" e_stop="66007" e_length="248"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="66008" i_stop="66513" i_length="506"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66514" e_stop="66613" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.027" acc_prob="0.978">
            <gDNA_intron_boundary i_start="66614" i_stop="66769" i_length="156"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="66770" e_stop="66894" e_length="125"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.937">
            <gDNA_intron_boundary i_start="66895" i_stop="66975" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="0.973">
            <gDNA_exon_boundary e_start="66976" e_stop="67050" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65628" stop="65661"/>
              <exon start="65760" stop="66007"/>
              <exon start="66514" stop="66613"/>
              <exon start="66770" stop="66894"/>
              <exon start="66976" stop="67050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65628" stop="65661"/>
              <exon start="65760" stop="66007"/>
              <exon start="66514" stop="66613"/>
              <exon start="66770" stop="66828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276890" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACTCTGTGCCATTTTTGAAAAAAGAAGATCAA : GTTTGCAAAGATATGGTTTTTAGAAGAATTTGGAATGTGAATTGGGTGGTAAACATGAAGTTGATGCGGAAGATGAGACGAACATTCTCAGTTTCAAGTCAATCTGCAGTTGATTTTGCTTCAAAAGATGGCGAACTCAGGGTCTTCATTGTTGCTGGGGAGGTTTCTGGTGATACAATTGGGTCCCGTGTAATGGGTTCTCTAATAAAGCTTTCTCCTTTGCCTGTTCGTTTTGCTGGTGTTGGAGG : GAAGATGATGTCTAAGCAAGGGTTGAATCCTTTGTTCCCGATGGAGGATATTGCAGTAATGGGCATTTGGGAGCTGCTGCCGTATCTTAATCAATTTAGA : GTTAGGCTCAAGCAAACTATAGAAGCTGCTCTTTCTTTTAAGCCTCATGTCGTACTCACTGTAGACGCTAAAGGATTTTCCTTCCGTTTCCTAAAGCATTTGAGGGGTAACGCTCTGTAGCTTTT : CTACTTGTGTTCAACAGGGGATGGTTAGCCCGCTGCACTTCCATTATGTATCACCATCATTTTGGGCCTGGAAAG</gDNA_template>
            <first_frame> S  L  C  A  I  F  E  K  R  R  S   : S  L  Q  R  Y  G  F  *  K  N  L  E  C  E  L  G  G  K  H  E  V  D  A  E  D  E  T  N  I  L  S  F  K  S  I  C  S  *  F  C  F  K  R  W  R  T  Q  G  L  H  C  C  W  G  G  F  W  *  Y  N  W  V  P  C  N  G  F  S  N  K  A  F  S  F  A  C  S  F  C  W  C  W  R  :  E  D  D  V  *  A  R  V  E  S  F  V  P  D  G  G  Y  C  S  N  G  H  L  G  A  A  A  V  S  *  S  I  *   : S  *  A  Q  A  N  Y  R  S  C  S  F  F  *  A  S  C  R  T  H  C  R  R  *  R  I  F  L  P  F  P  K  A  F  E  G  *  R  S  V  A  F  :  L  L  V  F  N  R  G  W  L  A  R  C  T  S  I  M  Y  H  H  H  F  G  P  G  K </first_frame>
            <second_frame>  H  S  V  P  F  L  K  K  E  D  Q  :  V  C  K  D  M  V  F  R  R  I  W  N  V  N  W  V  V  N  M  K  L  M  R  K  M  R  R  T  F  S  V  S  S  Q  S  A  V  D  F  A  S  K  D  G  E  L  R  V  F  I  V  A  G  E  V  S  G  D  T  I  G  S  R  V  M  G  S  L  I  K  L  S  P  L  P  V  R  F  A  G  V  G  G :   K  M  M  S  K  Q  G  L  N  P  L  F  P  M  E  D  I  A  V  M  G  I  W  E  L  L  P  Y  L  N  Q  F  R  :  V  R  L  K  Q  T  I  E  A  A  L  S  F  K  P  H  V  V  L  T  V  D  A  K  G  F  S  F  R  F  L  K  H  L  R  G  N  A  L  *  L  F :   Y  L  C  S  T  G  D  G  *  P  A  A  L  P  L  C  I  T  I  I  L  G  L  E   </second_frame>
            <third_frame>   T  L  C  H  F  *  K  K  K  I  K :   F  A  K  I  W  F  L  E  E  F  G  M  *  I  G  W  *  T  *  S  *  C  G  R  *  D  E  H  S  Q  F  Q  V  N  L  Q  L  I  L  L  Q  K  M  A  N  S  G  S  S  L  L  L  G  R  F  L  V  I  Q  L  G  P  V  *  W  V  L  *  *  S  F  L  L  C  L  F  V  L  L  V  L  E   : G  R  *  C  L  S  K  G  *  I  L  C  S  R  W  R  I  L  Q  *  W  A  F  G  S  C  C  R  I  L  I  N  L  E :   L  G  S  S  K  L  *  K  L  L  F  L  L  S  L  M  S  Y  S  L  *  T  L  K  D  F  P  S  V  S  *  S  I  *  G  V  T  L  C  S  F   : S  T  C  V  Q  Q  G  M  V  S  P  L  H  F  H  Y  V  S  P  S  F  W  A  W  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0053G19.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65629" stop="65661"/>
                    <exon start="65760" stop="66007"/>
                    <exon start="66514" stop="66613"/>
                    <exon start="66770" stop="66889"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSVPFLKKEDQVCKDMVFRRIWNVNWVVNMKLMRKMRRTFSVSSQSAVDFASKDGELRVFIVAGEVSGDTIGSRVMGSLIKLSPLPVRFAGVGGKMMSKQGLNPLFPMEDIAVMGIWELLPYLNQFRVRLKQTIEAALSFKPHVVLTVDAKGFSFRFLKHLRGNAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="72318" PGL_stop="74231"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72318" e_stop="72722"/>
            <exon e_start="74002" e_stop="74231"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.995" e_score="0.998"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="72318" e_stop="72722" e_length="405"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.995">
            <gDNA_intron_boundary i_start="72723" i_stop="74001" i_length="1279"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="74002" e_stop="74231" e_length="230"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72318" stop="72722"/>
              <exon start="74002" stop="74210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72416" stop="72722"/>
              <exon start="74002" stop="74231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328102" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGAACGGACAGTAGATTTCAGTGAAGAGAACAAAAAAATCCTGACTGAACACAACACTCTTTTCAATTTGCTCGACAATGGCATTCGAGCTCCCAAGTGATCTGATCCAACAAGCCAAGATCTTGACCCGAACCGAAGCGGGTCTACCCGACTACCTCCCTGATGACTCATCACTTCCGGCCATGCCTTCTCTTTCCGCCACCGTCGCCGCCTTCGATCCTTCTCCACCCTATCTCCGCTGTAAGCACTGCCAAGGTAGGCTTCTCAGAGGGCTCGAGTCCTTGATTTGCATATATTGTGGCCACAAATTGCACCAAAACCCTGACGTTGCTCCTGAACCCATTTCATTTAAGTCCACTGTGGGCTATCAATGGTTTCTCCAAGCTCTTCGCCTTGATGGATCG : GAGAAGGTTGGAGCAGCTACTGAAAAGAATCAGGTGAACAAGGGGCCGAGTTCACCTCATGATGAAGTTCTTTTATCTGATTTCCTTGATCTGAAAATAAGATGGCCAACTGAGCTGGAGACAGACAACACTATCATGACCAAGAAGCTAGAGCTAAGCAAAAGCTCTTATGATCCGACTGGATTTGACCTGGATAACTTTCTTTCTTTTCCAAAGAGGGAGAACATATC</gDNA_template>
            <first_frame> G  N  G  Q  *  I  S  V  K  R  T  K  K  S  *  L  N  T  T  L  F  S  I  C  S  T  M  A  F  E  L  P  S  D  L  I  Q  Q  A  K  I  L  T  R  T  E  A  G  L  P  D  Y  L  P  D  D  S  S  L  P  A  M  P  S  L  S  A  T  V  A  A  F  D  P  S  P  P  Y  L  R  C  K  H  C  Q  G  R  L  L  R  G  L  E  S  L  I  C  I  Y  C  G  H  K  L  H  Q  N  P  D  V  A  P  E  P  I  S  F  K  S  T  V  G  Y  Q  W  F  L  Q  A  L  R  L  D  G  S  :  E  K  V  G  A  A  T  E  K  N  Q  V  N  K  G  P  S  S  P  H  D  E  V  L  L  S  D  F  L  D  L  K  I  R  W  P  T  E  L  E  T  D  N  T  I  M  T  K  K  L  E  L  S  K  S  S  Y  D  P  T  G  F  D  L  D  N  F  L  S  F  P  K  R  E  N  I   </first_frame>
            <second_frame>  G  T  D  S  R  F  Q  *  R  E  Q  K  N  P  D  *  T  Q  H  S  F  Q  F  A  R  Q  W  H  S  S  S  Q  V  I  *  S  N  K  P  R  S  *  P  E  P  K  R  V  Y  P  T  T  S  L  M  T  H  H  F  R  P  C  L  L  F  P  P  P  S  P  P  S  I  L  L  H  P  I  S  A  V  S  T  A  K  V  G  F  S  E  G  S  S  P  *  F  A  Y  I  V  A  T  N  C  T  K  T  L  T  L  L  L  N  P  F  H  L  S  P  L  W  A  I  N  G  F  S  K  L  F  A  L  M  D  R :   R  R  L  E  Q  L  L  K  R  I  R  *  T  R  G  R  V  H  L  M  M  K  F  F  Y  L  I  S  L  I  *  K  *  D  G  Q  L  S  W  R  Q  T  T  L  S  *  P  R  S  *  S  *  A  K  A  L  M  I  R  L  D  L  T  W  I  T  F  F  L  F  Q  R  G  R  T  Y  </second_frame>
            <third_frame>   E  R  T  V  D  F  S  E  E  N  K  K  I  L  T  E  H  N  T  L  F  N  L  L  D  N  G  I  R  A  P  K  *  S  D  P  T  S  Q  D  L  D  P  N  R  S  G  S  T  R  L  P  P  *  *  L  I  T  S  G  H  A  F  S  F  R  H  R  R  R  L  R  S  F  S  T  L  S  P  L  *  A  L  P  R  *  A  S  Q  R  A  R  V  L  D  L  H  I  L  W  P  Q  I  A  P  K  P  *  R  C  S  *  T  H  F  I  *  V  H  C  G  L  S  M  V  S  P  S  S  S  P  *  W  I   : G  E  G  W  S  S  Y  *  K  E  S  G  E  Q  G  A  E  F  T  S  *  *  S  S  F  I  *  F  P  *  S  E  N  K  M  A  N  *  A  G  D  R  Q  H  Y  H  D  Q  E  A  R  A  K  Q  K  L  L  *  S  D  W  I  *  P  G  *  L  S  F  F  S  K  E  G  E  H  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0053G19.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72363" stop="72722"/>
                    <exon start="74002" stop="74229"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNTTLFSICSTMAFELPSDLIQQAKILTRTEAGLPDYLPDDSSLPAMPSLSATVAAFDPSPPYLRCKHCQGRLLRGLESLICIYCGHKLHQNPDVAPEPISFKSTVGYQWFLQALRLDGSEKVGAATEKNQVNKGPSSPHDEVLLSDFLDLKIRWPTELETDNTIMTKKLELSKSSYDPTGFDLDNFLSFPKRENI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="75084" PGL_stop="77106"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75084" e_stop="75236"/>
            <exon e_start="76811" e_stop="77106"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75084" e_stop="75236" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.976">
            <gDNA_intron_boundary i_start="75237" i_stop="76810" i_length="1574"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76811" e_stop="77106" e_length="296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75084" stop="75236"/>
              <exon start="76811" stop="77106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714334" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATGACGCAGAACTAACAAATTTTAGTTCAAATCTTGAAGATATGGATTTTGGCAGTTTTTCGCAGTCAGATCCTTTTTCAGGTGCACCTGGCAAAGAAGGTGTTTCTGCGGAAGGGAATGGAGATATTTTGGAAGTTCCTACCATATTCAG : TACCGTTGATACCCCAAGCAAGGTTGGTGACGATGCTGGACATGCTTCAGAGAATGCAGCCATTCATGCTGAATCAAATCCATTGAAGAATGATATGAATATAGAAAGTATAATGTCACAGATGCATGATCTTTCTTTTATGCTCGAGACCAATCTATCCATTCCCTCAAAATCCAACATTTCTTCTCCCAAAGATTGATACATCACTTTGCTCGTGTGGTTTGACTTCAATATTCATGTAATCAAGCTGTACCTGTTCATGTATTTTATAATAAGAGAATATGCTTGTTTTTGTA</gDNA_template>
            <first_frame> Q  *  R  R  T  N  K  F  *  F  K  S  *  R  Y  G  F  W  Q  F  F  A  V  R  S  F  F  R  C  T  W  Q  R  R  C  F  C  G  R  E  W  R  Y  F  G  S  S  Y  H  I  Q  :  Y  R  *  Y  P  K  Q  G  W  *  R  C  W  T  C  F  R  E  C  S  H  S  C  *  I  K  S  I  E  E  *  Y  E  Y  R  K  Y  N  V  T  D  A  *  S  F  F  Y  A  R  D  Q  S  I  H  S  L  K  I  Q  H  F  F  S  Q  R  L  I  H  H  F  A  R  V  V  *  L  Q  Y  S  C  N  Q  A  V  P  V  H  V  F  Y  N  K  R  I  C  L  F  L   </first_frame>
            <second_frame>  N  D  A  E  L  T  N  F  S  S  N  L  E  D  M  D  F  G  S  F  S  Q  S  D  P  F  S  G  A  P  G  K  E  G  V  S  A  E  G  N  G  D  I  L  E  V  P  T  I  F  S :   T  V  D  T  P  S  K  V  G  D  D  A  G  H  A  S  E  N  A  A  I  H  A  E  S  N  P  L  K  N  D  M  N  I  E  S  I  M  S  Q  M  H  D  L  S  F  M  L  E  T  N  L  S  I  P  S  K  S  N  I  S  S  P  K  D  *  Y  I  T  L  L  V  W  F  D  F  N  I  H  V  I  K  L  Y  L  F  M  Y  F  I  I  R  E  Y  A  C  F  C  </second_frame>
            <third_frame>   M  T  Q  N  *  Q  I  L  V  Q  I  L  K  I  W  I  L  A  V  F  R  S  Q  I  L  F  Q  V  H  L  A  K  K  V  F  L  R  K  G  M  E  I  F  W  K  F  L  P  Y  S   : V  P  L  I  P  Q  A  R  L  V  T  M  L  D  M  L  Q  R  M  Q  P  F  M  L  N  Q  I  H  *  R  M  I  *  I  *  K  V  *  C  H  R  C  M  I  F  L  L  C  S  R  P  I  Y  P  F  P  Q  N  P  T  F  L  L  P  K  I  D  T  S  L  C  S  C  G  L  T  S  I  F  M  *  S  S  C  T  C  S  C  I  L  *  *  E  N  M  L  V  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0053G19.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75085" stop="75236"/>
                    <exon start="76811" stop="77009"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDAELTNFSSNLEDMDFGSFSQSDPFSGAPGKEGVSAEGNGDILEVPTIFSTVDTPSKVGDDAGHASENAAIHAESNPLKNDMNIESIMSQMHDLSFMLETNLSIPSKSNISSPKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 192 chains have been computed
$ 
$ memory statistics:
$ 323232 bytes spliced alignments in total
$ 150 spliced alignments have been stored
$ 2154 bytes was the average size of a spliced alignment
$ 21960 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1996 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 208 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 05:36:25
-->
