<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 05:43:39"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321457" ref_strand="+" ref_description="SGN-U321457        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | DNAJ heat shock N-terminal domain-containing protein, low similarity to GFA2 (Arabidopsis thaliana) GI:21429604; contains Pfam profile PF00226: DnaJ domain | chr2:17800384-17802757 FORWARD | Aliases: F7D19.25, F7D19_25(evalue: 1e-127, score=453) genbank/nr: gi|18406052|ref|NP_565982.1| DnaJ protein family [Arabidopsis thaliana] gi|17978968|gb|AAL47445.1| At2g42750/F7D19.25 [Arabidopsis thaliana] gi|20197961|gb|AAD21732.2| expressed protein [Arabidopsis thaliana] gi|20453337|gb|AAM19907.1| At2g42750/F7D19.25 [Arabidopsis thaliana] gi|21553687|gb|AAM62780.1| unknown [Arabidopsis thaliana](evalue: 9e-126, score=453)">
      <seq>ttgatccattatttggtcagttcttgatttttctgtaaaaaaaaatggctcaattgttgtcacctgtttgtacagattcactaaaattacagaacacagttcagtgtttctatacaagaagtaaagttccaattttgggtaataattttagctcaatgggtgtttttggaaagaagagaggaggattagggaggattaaagttgcttatcaagattctgctgctgcatctgaggaaattgctgatgatttttatgctgttttgggtttgcttcctgatgctacacctgctcaaataaagaaggcatactatagttgcatgaaagcttgccatccagatttgagtggtgatgatcccgagaccacaaatttttgcatgtttatcaatgaggtctatgagattcttagtgatccagtgcaaaggagagtttatgatgagatccatgggtacacagccacagcaattaaccctttcctgagcgattcatcgccgaaagatcatgtatttgttgacgagtttagctgcataggctgcaaaaattgtgccaatgtttgctcaaaagtgtttgggattgaggaagactttggaagagctagagtttacgatcaatgtggacaccctgatttaattcaacaagctatagatagctgcccagtggattgcatacattggacttctgctgcacagctgtctttgcttgaggatgaaatgcgaagaatagaaagagtaaacgttgccttgatgctatcaggaatgggcagtggagccatggatgtattcagaatggcgagcacgcggtgggaaaaacgacaatctaaagttctggaacaagctaaagtcagaatgatgaagaagaaaaattctgagaaaactgaatcatactgggataacctatggggcgatcgtaaagattacacaaagacagaggaggaagtggaagatagatcaaaacgagctgcagcagctgctcgcaaatggagagagtactcaaggagaggtgctgacaaacctcctacctttaaacttcccgaggccatctctaatgacaattgacatatacttcctaaccgactttgcagtgcacggtacatgcatctcacctttgtaaaatatggtacatttagatatagtatattcatgatagtcatggttcctccccatatcgatgtaattatatagctaaaattgacctcgggtacatctatctgtatgtaagatcattcataattcaataaaagttgtatggagaaaacaattattcaacctgtgtatttcgtcgtttgatattcatgattngatggttctattctgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="13019" stop="19357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13295" g_stop="13556" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13557" i_stop="14541" i_length="985">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.476" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14542" g_stop="14670" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="398" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14671" i_stop="14743" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14744" g_stop="14873" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="528" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14874" i_stop="15399" i_length="526">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15400" g_stop="15520" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="649" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15521" i_stop="16312" i_length="792">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16313" g_stop="16394" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="731" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16395" i_stop="17567" i_length="1173">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17568" g_stop="17621" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="785" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17622" i_stop="17999" i_length="378">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18000" g_stop="18038" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="824" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18039" i_stop="18499" i_length="461">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="18500" g_stop="18599" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="825" r_stop="924" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="18600" i_stop="18673" i_length="74">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="18674" g_stop="19051" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="925" r_stop="1304" r_length="380" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1311" polyA_stop="1323"/>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-U321457" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>1295</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13295" e_stop="13556"/>
          <exon e_start="14542" e_stop="14670"/>
          <exon e_start="14744" e_stop="14873"/>
          <exon e_start="15400" e_stop="15520"/>
          <exon e_start="16313" e_stop="16394"/>
          <exon e_start="17568" e_stop="17621"/>
          <exon e_start="18000" e_stop="18038"/>
          <exon e_start="18500" e_stop="18599"/>
          <exon e_start="18674" e_stop="19051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAT-CATTATT-GGTCAGT-CTTGATTT-TCTGTAA-AAAAA-TGGCTCAATGGTTGTCACCTG-TTGTACAGATTCACTAAAATTACGGACCACAGTTCAGTGTTTCTATACAAGAAGTAAAGTTCCAATTTTGGGTAATAATTTTAGCTCAATGGGTGTTTTTGGAAAGAAGAGAGGAGGATTAGGGAGGATTAAAGTTGCTTATCAAGATTCTGCTGCTGCATCTGAGGAAATTGCTGATGATTTTTATGCTGTTTTGGGTTTGGTAATTTACAACTTTTTTTTTTTTTTTTTTGCATTTTACTTGTCAAAGATCAAATTTTTATTGCTGCTTGGTGTATGGGGTAAGGTCATTTGAAGCTGTTTTTTTGCTTTTCATGTTGTAGTTTCTGTTTTTGTGATTACTTGCAATGAATTTCTCAGTAAAGAGGTAATTCATTTATGTAGTAATTTTTGTGTAAGTTGTATAATGTTCGGTAGATAGTTAGGAAGTAAGTTATTCACGTAAAAAATAATATGATATTTTTGTGTAAGTTGTATAATGTTATGTAGCTAGTTAGGAAGTAAGTTATTCACGTAAAAAATGATACGATATTTTTGTGTAAGTTGTATAATGTTCGGTAGCTAGTTTGGAAGTAAATTATTCATGTAAAAAATGATATGATATTTTTGTGTAAGTTGTATAATGTTCGGTAGCTTGTTAGTAAGTAAGTTATTCATGTGAAAATTGATATGATGCAAGGCTTGCAATTTAGAAACTCGCATAACTAATACATGTATAAGTTATGAGGGAATTGGTAATAATCTTATGCGGGGAGAAGATGGAATAATTAATACGTGCATAATTTAATCAGCTACCAAGCATCATTAATATTATTAAGGAAGATACACCATGAGTTTATAGTAACAAAAAAATATCAGTTGTTGTACTTTATCAGATTCAAGAAGCTCGATTTGCAGGAATCTAGAGGCGGATCTAGGATTTAAGTTTATGAGATCCTATAATAACCTCAAGTTAACATATAATAACAATTGATTTCATGATAAAATATTTACAGATATTTAGTGTATTATTAGATTTATGTAAACCCCTAGATCACACTTAAATCCGCCCGGTGCAGGACATGAAAATGCACATTTCTAGCATAATTTTGTATGTTTTGTTTTTCTCTTGTCTGTTTCCTTTTCTGTGTTTTTTTGGTCATGCTAAAGGATACCTCGTTAACTTATAATGTCCATTATGTTGCTAGCTTCCTGATGCTACACCTGCTCAAATAAAGAAGGCATACTATAGTTGCATGAAAGCTTGCCATCCAGATTTGAGTGGTGATGATCCCGAGACCACAAATTTTTGCATGTTTATCAATGAGGTCTATGAGGTAGGTGCTTCACAATTTGACAATCCATGTGTTTTTTCTGGAACTTCAATTTCTAATCATTATAATACTGTAGATTCTTAGTGATCCAGTGCAAAGGAGAGTTTATGATGAGATCCATGGGTACACAGCCACAGCAATTAACCCTTTCCTGAGCGATTCATCGCCGAAAGATCATGTATTTGTTGACGAGTTTAGCTGCATAGGTATTATAGTCTCACATTTTATTTGTTTGTTAATCTTTTTTTGTTCCACTTCATATCTTTTTCAAGTAGCTGTCCTTTTTGTACTTCCAGTTAAAATATGTCGATAGTTAATCATAATCTATTAGTTAACTTGTTGGTTAACTATATTTTGAAACACACATCTTCCATAGTTTCAGTTTCCTTTTTCCTGATGCTGAATTCTTAAAGGCCGTGTTTGTACTAATTAAAGAAGCTAGTTGTCATCTGATCACCTCCAACTCATTTGTGTTCACCAAATCATGCTTTTTTACAAGGCTAGAAAGCGAGAATGTTTCACGTCACAATGTGTATGAATGCTTAAAGTATATATAAAGAAGTTCATAGCTTTTGTATAGTCTAAGTGCAAAGCATTGTACTTCCAGTTCTAATTTTTTTCCGAAATTTGTTGAACTATGTTACGGATGTTTTGTCAATTCATTGAAATAAAAAAACATTGCAGCTCATTCTTGAAAAAATATGATTTAGAACACATCTCTCTCCTTCACAGGCTGCAAAAATTGTGCCAATGTTTGCTCAAAAGTGTTTGGGATTGAGGAAGACTTTGGAAGAGCTAGAGTTTACGATCAATGTGGACACCCTGATTTAATTCAACAAGCTATAGATAGCTGGTAGGTTCTTGCTTCATAGATGTAGTTGCTTGTTTCGAACTTATATATCCGTTCTGGTAATGACCTAATATAATTTTGCACTGAAAAGTTTCAAGTAAGAAAAGACATATAGTCATTATTTCCTTTCTGGTCTCTCAATGTGGTAAAACCACGATATATAGCAAATAAATTTGCAAAAATGATATTGCAGATTGGCAATTGAAGTGCAATGCCGGAGCTTATATATGTGATGCATTTCCTATGTTATCATGTTTCGTTCATTTGTTTTATCATGCTGCTACGAGATCTTTCAACTATCATATTCTTGCTCTATCAGATGCTTATGACACACACTAAGTGTGACTAAAAAACAATTTGAGACTTGAGTCACTAGAGTATAGTTCAACTGTGTATCTCCTTTAGACCGCAATGTTTATTCTAGCTATTTCCCCTCCCATAAGTAGTTATAAGCTGGTCAAATAAGCTTGAACTTTAGCAGAGTATGGAAGAATGTCATTTGTGATAGACTGATGTAAGTAAGTTTGCTTCAACTTCTGGGAATACCTGCATTATTAGTTTTAACAAAGATTCTTATGCTGTATTAAGGCTACATTTCCAAAAGGAGAGGAAAGGAAACTTGATTTATGTCTTATCATCTGATGACTTTGAGTTCATCTTGGAAAAAAATTACATACTCCCTCCGTTTCAATTTGGTTATTTGGTTTTAACTTGTACTTCTGCTATATCCATCTCACGGGATTTGTAGGATCAAATGATATAGCTAGTCAAATCACTAGTTCTTTCTCTTTGCAGCCCAGTGGATTGCATACATTGGACTTCTGCTGCACAGCTGTCTTTGCTTGAGGATGAAATGCGAAGAATAGAAAGAGTAAACGTGAGCTACATTTCTCATTTATCTTGGTGATTTATGTCCATCACTTATGCAGTTTATATTCCTTTTTGCTGCTCTAAAATGCTCGACGACTTCACGAGTTGTTGCCAGATCAATTCTAAGTTTATGCTTTTTGCTGAATATTCCGGATGCCAATAACCTAATACATCCATGTAATACTATGGATATCAATAACCTAATAATCCATGTAGTACTTTGGATATCAATAACCTAAATTTATGCTTTTTGCTGACTGAACTTACCTATCACCTAACAGTTCTATAAACAGGAAATAAGAGATCATCTCACTCAACTCTATGTGACCAAAAAAATTGTAGTATTCAAAATACCTTGCATTCTCCTTTAAGTGTAATAAAATGCCTTTAACTAATCAAGGCAGGCCAGGGGTTAAAAAATTTTCGACATTATACTCCTTGGTAAAAGTCCTAATTGGTGGGCCTAATAATGGGATATGATCTTCCCTCTACGGGAAGGAATACCATTCCCCTACCTTGTGGAAAAAGCGTTGAATGTAAGGGGTTCCAAATAAAAATAAAAATCTAATGGCCTCCTTGGCGGGGGGGGGGAAGGGTTTTTGGGGGCCCCCCTAAAATTCCCAAATTTTGGCTCCCGGTGGAATTACAAATGTTTAAATGACCCTTTCCCACAAAAAAAAATTTTGGGGGGACCCAAATCTCAAAAACCCCCAAACTGGGGGGGGACCTTTTTAAAACGGGGGTTGAAAAAAAAGTGGGTTATTACGGGTTAAAAAGGGGCGCCGTAGCACTCCAAAAGAGGGGGGGGGGCCCCGGTTTTTTTTAAAGGGGTGCCCCCCCCCCCCTTTTTTGGTCCTCTGGCGCGGAGAATTAACGTCCGCGTTTTTTCACAAAATATTGTCGCCAAAAAACAAAAATTGTTTGGGACCCCGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCCGTTTGAGTTAACAAGTTTCAAATGACTCTATCAACTAAAAAACATATGCTGCTAGCTAAACTTCACAAATTCCTTAATCTTGTTTGATCTTCTTTTTAGCTTGGTATTGAGTATAACGTGTGTATTTCATGTGTCAATAGGTTGCCTTGATGCTATCAGGAATGGGCAGTGGAGCCATGGATGTATTCAGAATGGTAAACCCTAATTCCATTTTTTTTGTCTCTTTTGTCCGTATGAGTTTAATGTCTAGTTGATGTTATCATGATATTTTGTCCTTGAGATGTCCATAATTTTGTTGTAGCTTACAGTGTTCCACATGTTATCTACAACTATTCTGTTATTTTATTTTTTCGAGACCACCATTAGTTCTGTTTCTTCATTTGGACTTCTAAGTGAAATGATGGTTTGTGCACACTCTCGGAATGATTTGTACAGTTGCTGAATTAGCAAGTCATTATTTTTAAGAAATGTTCTGATAGTGAAGCTCTTTGCATATAAAGTTCAGCTAATGATTTTCTCTTCTCCAATTCCCTTCGCGCATTTGAATTATGTCAAAATACTTTATGATGCAGGCGAGCACGCGGTGGGAAAAACGACAATCTAAAGTTCTGGTATGAACTCTTGGCTCAAGTGTTTAAATATACGTCTACCAACCTTATTATATTCATCGTTCAGTTAGCTTGTTTTGCTTATGTGCAAATTGAAGCGCTTGTTGACAATATTTAGGACAGTGGTATTTTATATATGCCATAGCGCACATGGTACGTGTTTGCAAATGGTTTACTTTTATGCATGTTCCAGATTTCAATTGGCTTTTCATGCCTTAAGAAGTTTTAAGTTCTAGTAAATTTACGCATGGTGCTGCAGTTTCCTCTATTTGTTGTTCATTTTTGTCTCCTTTTGAGCAGAGAAATTTCTATGACATTAGATATTGCTTCGGATATTGTTAGTTAACGGTAGAGGGATACATAAAGTTGTTTCTATACGGGATATTTTTCTCGATTTTCCTCCTATTGATAGTTGTAGCATTGTGATTAGATAGAAAACTTGTATGACATGTAAGTTACTGCAGGAACAAGCTAAAGTCAGAATGATGAAGAAGAAAAATTCTGAGAAAACTGAATCATACTGGGATAACCTATGGGGCGATCGTAAAGACTACACAAAGACAGGTAGGAAAAACAAGCCTAGATAAACTTGCTAATGCATATTATCCATGTAACCTCATTTGATTTGGTTTCTACAGAGGAGGAAGTGGAAGATAGATCAAAACGAGCTGCAGCAGCTGCTCGCAAATGGAGAGAGTACTCAAGGAGAGGTGCTGACAAACCTCCTACCTTTAAACTTCCCGAGGCCATCTCTAATGACAATTGACATATACTTCCTAACCGACTTTGCAGTGCACGGTACATGCATCTCACCTTTGTAAAATATGGTACATTTAGATATAGTATATTCATGATAGTCATGGTTCCTCCCCATATCGATGTAATTATATAGCTAAAATTGACCTCGGGTACATCTATCTGTATGTAAGATCATTCATAATTCAATAAAAGTTGTATGGAGAAAACAATTATTCAACCTGTGTA-TTCGTCGTTTGATATTCATGATT-GATGGTTCT</genome_strand>
        <mrna_strand>TTGATCCATTATTTGGTCAGTTCTTGATTTTTCTGTAAAAAAAAATGGCTCAATTGTTGTCACCTGTTTGTACAGATTCACTAAAATTACAGAACACAGTTCAGTGTTTCTATACAAGAAGTAAAGTTCCAATTTTGGGTAATAATTTTAGCTCAATGGGTGTTTTTGGAAAGAAGAGAGGAGGATTAGGGAGGATTAAAGTTGCTTATCAAGATTCTGCTGCTGCATCTGAGGAAATTGCTGATGATTTTTATGCTGTTTTGGGTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCTGATGCTACACCTGCTCAAATAAAGAAGGCATACTATAGTTGCATGAAAGCTTGCCATCCAGATTTGAGTGGTGATGATCCCGAGACCACAAATTTTTGCATGTTTATCAATGAGGTCTATGAG.........................................................................ATTCTTAGTGATCCAGTGCAAAGGAGAGTTTATGATGAGATCCATGGGTACACAGCCACAGCAATTAACCCTTTCCTGAGCGATTCATCGCCGAAAGATCATGTATTTGTTGACGAGTTTAGCTGCATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAAAATTGTGCCAATGTTTGCTCAAAAGTGTTTGGGATTGAGGAAGACTTTGGAAGAGCTAGAGTTTACGATCAATGTGGACACCCTGATTTAATTCAACAAGCTATAGATAGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGTGGATTGCATACATTGGACTTCTGCTGCACAGCTGTCTTTGCTTGAGGATGAAATGCGAAGAATAGAAAGAGTAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCTTGATGCTATCAGGAATGGGCAGTGGAGCCATGGATGTATTCAGAATG..........................................................................................................................................................................................................................................................................................................................................................................................GCGAGCACGCGGTGGGAAAAACGACAATCTAAAGTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAGCTAAAGTCAGAATGATGAAGAAGAAAAATTCTGAGAAAACTGAATCATACTGGGATAACCTATGGGGCGATCGTAAAGATTACACAAAGACAG..........................................................................AGGAGGAAGTGGAAGATAGATCAAAACGAGCTGCAGCAGCTGCTCGCAAATGGAGAGAGTACTCAAGGAGAGGTGCTGACAAACCTCCTACCTTTAAACTTCCCGAGGCCATCTCTAATGACAATTGACATATACTTCCTAACCGACTTTGCAGTGCACGGTACATGCATCTCACCTTTGTAAAATATGGTACATTTAGATATAGTATATTCATGATAGTCATGGTTCCTCCCCATATCGATGTAATTATATAGCTAAAATTGACCTCGGGTACATCTATCTGTATGTAAGATCATTCATAATTCAATAAAAGTTGTATGGAGAAAACAATTATTCAACCTGTGTATTTCGTCGTTTGATATTCATGATTNGATGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319627" ref_strand="+" ref_description="SGN-U319627        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: AT1G06400.1 | Symbol: None | Ras-related GTP-binding protein (ARA-2), identical to Ras-related protein ARA-2 SP:P28185 from (Arabidopsis thaliana) | chr1:1950843-1952726 REVERSE | Aliases: T2D23.10, T2D23_10 (evalue: 2e-98, score=355) genbank/nr: gi|6688535|emb|CAB65172.1| Rab11 GTPase [Lycopersicon esculentum](evalue: 4e-119, score=431)">
      <seq>tatttttttcttcttcaaaattgaatcttttcagtgaacttttactatttggtcaatcaagaagtgaaattacagagcaaaagcagatatagttttgaagatggcaggttacagaggtgatgatgagtatgattaccttttcaagcttgtgttgataggtgattcaggtgtgggtaaatctaatctgctttccaggttcaccaaaaatgaattcaatttggagtctaaatcaactattggggttgaatttgcaaccaaaagtcttaatattgatggtaaagttattaaagctcagatttgggatactgctggtcaagaaaggtatcgtgccattacgagtgcttattatcggggagctgtcggtgctttgctcgtatatgatgttactcgacatgttacctttgaaaacgtcaacaggtggttgaaggaattgagagaccatactgaccctaacattgtagtcatgctcctaggcaacaaatcagatctccgacatctcgtggctgtttcaactgaagaggctaaatctttggcagagagggaagccctatacttcatggaaacttctgcattagaagcgaccaacgttgaaaatgcgtttactgaagctctcacgcagatataccggatcgtcagtaagaaagcagtcgaggcaggggacgaaggtgctacttcaaccgcaccacctaaaggacagacgattaatatcaaagatgaaggatctgcttggaaaaagtttgggtgctgttcgagctagggctcacgtaagacaatagctcaagctttatatatcagttgtaaattgtcattaaatcaatgatttcctctccctgttttctctcactttgggtatcgcgattgtgggatataagatttattctatagtcatgagaatacgtgaagcagcgcgttctcatgaaaaattccgaaggaggatcaggtactgctagtttctaattacagaatgtctaaacaaggtcttagttttatgttttctggttgatggcttgaaaaactggagatatctttgcaataacctgttaccgaatatcttcttatttgtctcgaatttacgtcttaattatttttccccttctaaaagtgtatttcctgagctgagtagcaatgtttgttgttcatgatatgtgtagtttgataaattaaagtagaacatggcaaggtgtgcccagagttgatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="29629" stop="35603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29929" g_stop="30249" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30250" i_stop="34423" i_length="4174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34424" g_stop="35311" g_length="888"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="1209" r_length="888" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-U319627" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1209</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29929" e_stop="30249"/>
          <exon e_start="34424" e_stop="35311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTAAAGGTTAAATCTTTGAACTTTTTTTTGTTTTGTATTGGTGATATTCACTCAGTATGTTAGTTTTTGTGTTTCTATATCTGGGGTTTTCTTGTTTTTGGTTTATGGCTTGAGTTTTAGTGTTTTTTGTTGATTGGTTGCATAGTTTTGGTGTAACAGTCTTTTTACTAGTGATTGAGTCTGCATCTGTTTATTTTGAAGTTGTGTGGGTTTGAAGAGTAGTGTTAATGGTAATAACAACATACTGAGTGTAGTCCTACAAGTGGGGGTCTCGGGAGGGTAGTGTATATGCAACTTTACGCCCCCTCCCCCCCAACCTTGCGAAGGTAGGGACTAGGAAAGCGGGTTCCGAAGGACCATTGGCTCAAGTAAACGTATGTAAGGGTAGTATTAAGTATTAAGTAGTTATATTTATGTGTTTGGGATTTAGGCAAGTGAGAATTGCTTGTTTATGGTTTGTGGCTTGAGTTTTAGTGTTTTTGTTGATTAATTGCATATTCTTAGTGGAACTTGCTGTAACACTGCTTGAGCTTGCATCTCTTGATTGGTTGCTTATTTAAGAGTGGTATTAACAGTAACAACAACATACTGATTGTAATCCCGCAAGTGGGGTCTATAGAGGGTAGTGTGTATGCAGCCTTAATCCCCTACCTTGTGAAGGTAGAGAGGCAGTTTCTGAAGGATCCTTGGCTCAACTAACCACATATAAGAGTAGTATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTGTTTGACTGGTTTCTAGCTTTTTTTCTTTTGGGTGTAACCATCTGATATCTGATACTCATACCACGACTAGTTTAGATTCGTGTTGCATAGGACCATTAAATGGGGAAACACTCACATCCACTTAGTTAAAGGTATGGTATCCCATCCACTTCACCGCACCTTTGATGTTAGACTTTTTACTGTGATTTCATAGCTTTTGTTTTACCAATCTAGGAAATCAAAGAAGACAACTTGGTGTTATATGTGAAAAAGGAATTGATAATTTTTTACAGGCATGGTTGATGTGTAGACTAGAATGGAATGTTTTTCGCTAGCAAATGCTTCCTCTGAATAGGAAATAGTTTTACTGAACTGACCAATGTAAAATATACTCCATTTCTAGATGAGACCATTACTCTTTGCGGAATAAGATAGTTTTTCTGTTTGGTTGTAATTCTTGCAGATACTTGTAAAAAATATGAATTAATTGTATTTTCTTATGTAGTTTCTACATTTATAGCATATGATTTTGATTAGTTTTTTTTTATGTCATTGAATTTTGGTTTTGTAGTAGATGCTATACTTAAAGAACATACTTCCTTGTTTAATGTATGAAAATTGGAAGGAATATCCTTAGTCAACAGTCTGTCCTACACTTGATATTGTTATTCTACCGGATAGTATGAGTTTCTCCTTTTTGATTTCATTGAGTAGATTTGTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCTATTGTAGTATGTTAAGAGGAGTATAGTAGATATTTGGTATGGGCAAAAAAGAATCTCAGATTAATTATTTCTCCAAAAAGTAGTGAACGTGAAAGAATTTGGTGAACCAAAAAAAGTGAGGATTTCAGTGTAGGGAGAAATTTGGGGAACTAAAAGAACTGACGATATGGGTTACATTATTGGTTACTAGGCTTATGAATCATAAGTGTCGATCAAATGCCACGAGCAATGGCATCGTGTCACGGTTGTCCTTGAAATGTTCTATACTCATGTTACTTGCAACAAATAATAATTTTTGGGTGGAAACACAGTGCAGTTTTAATGATGGGGTGATTGAAACATGTGTAGCTGGCATGATAAAAACGTGAGGATTGAATAAAGAGGAACATAACAGCTGTCCCTGCTTGAACACCCTTGCATATCTTTCTGATATGATGCTCAAGTTTGTAAGTGGCCTTTATCCTATTCATTTCTTGAGAATATGTGAAGCTATGCGTATTGGTTCTGCCAGTGTTTCTGTTGGCACAGTTCAGCCTCTGGTTCACCACCTTTTAGTTTGTAAATAACATCTTGTACGCTTCTCAATGTCAAGGACGTGATCCACTCTGGACGAAATATTAATCTTCCTTCTTATTACAAATCCATCATTCTGTTGTATCTCCTATTGTTGTTTGCATGCAAAACCCTTTTCTGAGATGAATTACATTGGCAAATAAGAGGTAATCGCTGAGCATTCTCATCTCTTGTGAGGAGAAAAAAATTATTTTCTTCTCTAACTATTCCACTCAAGGTGCTTTTTTATGTCTACTATATTTATCCACAGTAACCCAGTTTCCTACTTAGAGCTTAAAGATAGCAACAAAAGAAAGATGGAGTAGCCCTCATCCTTCTGGGCATTTTTTTGGTCTTATGGTTTCTTGTCCTATTGTTTTTTTCCAATTCTCCTATAGGCCCTGCTATGCGTGACTCCAGATTTGTTGGGCTCCAATGCGGGTATCAAAACACTGGGCAGGAAACCAAAGAAAATAGAATTAAAGAAAGTTAACTTTGTGAATAAATTGGGTCACGTATTACTGGTAAACTACAGTGTTCATTATTTTTCTTAAATCAGTAAATTTAATATTCATTATATTCAAACTCAGTTGCATCTACAGATTTTTCGTTTACTACTAGTTTTTGTTTGTTTTCTTCCCTCTTGGTGTTGCCTCCCTCCCTCCTCCCCCAACATTATTGACGATCTGTGCTGATGGAGAATGGTGTTATATGCAACTTATTGTTACTGTTGTATAGAAAGGGAATGTATTGGGATGCATCCTTGTTCCTTTAAGTTGTTGTACTATTGCTTCAGTTTTTCTTCTTCATACCAGGTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTTGCAATAACCTGTTACCGAATATCTTCTTATTTGTCTCGAATTTACGTCTTAATTATTTTTCCCCTTCTAAAAGTGTATTTCCTGAGCTGAGTAGCAATGTTTGTTGTTCATGATATGTGTAGTTTGATAAATTAAAGTAGAACATGGCAAGGTGTGCCCAGAGTTGATTTAAGTGGATGA</genome_strand>
        <mrna_strand>TATTTTTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTTGCAATAACCTGTTACCGAATATCTTCTTATTTGTCTCGAATTTACGTCTTAATTATTTTTCCCCTTCTAAAAGTGTATTTCCTGAGCTGAGTAGCAATGTTTGTTGTTCATGATATGTGTAGTTTGATAAATTAAAGTAGAACATGGCAAGGTGTGCCCAGAGTTGATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344053" ref_strand="+" ref_description="SGN-U344053        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gggaactagtctcgagttttttttttttttttttgtgtgtttgggatttagatgagtgagaagtgcttgtgggtttgttggtttaatcttatttttggtaaggttcttcaaatgatgttgtgtttattggtattttctaagagtgtctagatgtgctgttgttgcttgattgggatttcttgtctttgggtgtggtatctgtgttcctaattgaaattcgagggacatggagtgcttactgcaaccaattatatataaaaaaaaaagaagaatatttttccgtgtttggttcatgaaaaagaatatcgtgagagcattttgaagacgtaatgaagtaaatcaaagtgtgttgccccaatggacttttagatgagatgatcatacaattcaacatttgtgcaggctatgtgtgctcctagttgtttagatgctattgtgatgtcaatctgaaagctaattatagaaattgtagtatccaaatttgttgttttaaaattatttgaacttattcagttcccgcacgagtacattggcaggtatgttttttctaatatgaaaaataattgaccaaagtaactcaatatttcctcataatttttgaaatccttagctattttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="13258" stop="31870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30602" g_stop="30617" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.625"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30618" i_stop="30964" i_length="347">
            <donor d_prob="0.879" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30965" g_stop="31570" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="621" r_length="606" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-U344053" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30602" e_stop="30617"/>
          <exon e_start="30965" e_stop="31570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACCATTGGCTCAAGTAAACGTATGTAAGGGTAGTATTAAGTATTAAGTAGTTATATTTATGTGTTTGGGATTTAGGCAAGTGAGAATTGCTTGTTTATGGTTTGTGGCTTGAGTTTTAGTGTTTTTGTTGATTAATTGCATATTCTTAGTGGAACTTGCTGTAACACTGCTTGAGCTTGCATCTCTTGATTGGTTGCTTATTTAAGAGTGGTATTAACAGTAACAACAACATACTGATTGTAATCCCGCAAGTGGGGTCTATAGAGGGTAGTGTGTATGCAGCCTTAATCCCCTACCTTGTGAAGGTAGAGAGGCAGTTTCTGAAGGATCCTTGGCTCAACTAACCACATATAAGAGTAGTATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTG</genome_strand>
        <mrna_strand>GGGAAC-TAGTCTCGA...........................................................................................................................................................................................................................................................................................................................................................GTTTTTTTTTTTTTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331368" ref_strand="+" ref_description="SGN-U331368        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>gtgatgattataagacatataaaacatgttaataaaaaggagtagagaagtatatgcgaaaattcaaactacaaacttagttccaaactaaactgtcattttgaaatatagatgttttacatggattcttcattaatcattatcatcaatatacgtgtttgagtgattgtgatgtgggcatggttacttcatgtagatacactcaaaattagcgaaaagtctataagtacacatactagatacgtatgcacatcataggaataataaatctttggattagttaggcataaactaaaccaagatgcccccaaggcctagctcgagtggcaaaaggtggaggatttgtgacttaggtcgcaggttcaagcccacaccatgcaaagcgaagcctggtatttaagtggggaagggtagaggggtggacccattatccaccgagtttagaaggttgtgattggtccaaagggcagtgggtcacggataaataaataattggaagtcatatttgtatgtgatacaacttaaagtactgacaaaaagaattgagatacaacttaaggtaacattcgaacttctgtaggattttttagtaaaggtggttttcaggccattttgagccacctgttacgttctaaatcaccagtatagttatccggtaactgtctatcaaagcttagacaaatgggaagatgtcaccctacattttttgcctatgctaggacttgatcccagaaatcccatggttttaatctatttcattgacactaccctggctttttataacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="31968" stop="33356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32268" g_stop="33056" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="788" r_length="788" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-U331368" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32268" e_stop="33056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCT</genome_strand>
        <mrna_strand>GTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAAT-CACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323323" ref_strand="+" ref_description="SGN-U323323        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: AT3G58710.1 | Symbol: None | WRKY family transcription factor, contains Pfam profile: PF03106#WRKY DNA -binding domain | chr3:21725984-21728129 FORWARD | Aliases: T20N10.60 (evalue: 3e-50, score=196) genbank/nr: gi|74096728|gb|AAZ99027.1| WRKY-A1244 [Capsicum annuum] (evalue: 4e-49, score=198)">
      <seq>ctttttattttctctcattttttcttctaatttctatatgatataaaacaaaatttagttaatcctcaaaaagtttttattttctttcttttttttttctaagttatataagttatttttgtgttttttggtcatggaagatagttcatacaaaaatctattttttcataaacaagaagattccaccggaactccaccggataatgctgctgattcttgtttttccggtgatgaagcggcggaagttagcatgccatcacctagaaaaagtaggagaggagcaaaaaagaaagtaatttcagtgccaataattgaaggtgatggatcaagaagtaaaggggaagtttatccaccacaagattcttggtcttggagaaaatatggacaaaaaccaattaaaggatcaccttatcccaggggatattatcgatgcagtagctccaaaggctgtcccgccagaaaacaagtcgagcgtagccgcctggaccccaccatgcttctcattacctattgctccgaacacaatcaccaaatcccggccgccgccgccgccaaacaccaccatcacaaccaccctactaccaccaccagttcacccactacctctaccggcaccgccggagacaataatgctactgcggctgtagccacggactctaccgtagtagacaaatcatcccccgaagaaccagatctatttgcttatcaacacgataatggattttcagagctcgccggtgagttaggttggttttccgatatgggaacaacaactacgtttatggagagtacgtcgtcgtccatggcgggatccacgtggaacgacagtgacgtggcgttaatgttgccgattcgagaagaggatcagtcgttgtacggtgatctcggtgaattaccggaatgttcagttgttttccggcggtacagtgtggaaactccctgctgcggaggtacaggataacaaatcatttgtcaatttttcactgaaattgccatatttttattttttaattatcttcctgacttttggttccacgttcttcgtgacccttttttttaattttatttttatgtaaagatctggtagattaaaaaaaaaaagaaatatactttgatttgatttttacttgaaaaacaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="40117" stop="4021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39817" g_stop="39548" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39547" i_stop="39334" i_length="214">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39333" g_stop="39187" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="417" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39186" i_stop="36759" i_length="2428">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36758" g_stop="36044" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="1132" r_length="715" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36043" i_stop="35776" i_length="268">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35775" g_stop="35752" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1133" r_stop="1156" r_length="24" r_score="0.708"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-U323323" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1156</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39817" e_stop="39548"/>
          <exon e_start="39333" e_stop="39187"/>
          <exon e_start="36758" e_stop="36044"/>
          <exon e_start="35775" e_stop="35752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTATTTTCTCTCATTTTTTCTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAGGTTTGTTCATTTACTTTATATCTGTCTCGATCAGTTTGTACACGCCTAGAGTAATTTTCAGTAATTGAACTGTGGGGTTTTGATTGTGTTTTTTTAAAAGAAATTTGATTGAAAAAATTCAGTTATACGATTTCACTAAATATGTTATTATTATTGAATTTGATAAAAAAAATATATATATGTATATGATAATTTTTTTTAAAAAATTTTGTAGTAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAGGTAATTATAATTATAATTAATCTTCACTTATTGTTAAATTTTTCATAAAAATGAATTTTATAATTAGTGTAATAAAAAAAAATTAATCAGTCTTTTTTTTGGTAATAATAATTGGTTTCTCTTTGTAGTTGCCGCCGGGGATAGTTGGTAAAGGTTTTTATACTTATCCGATAGGTTTAATGACTAAATTATTATAGACCAAAAACATTGCATTAATTAGAGTAGTAATTAATTAATATAATTAATTAATGTAGTAGTTTGAATTTTGTGTTTGCTAGTTACTACTACTTCTCACTCGCTTACTTAAACCTTGTTAATCACGCTCCTTTTATGGTGATTAGTAAGTATTTGTCCGTTTCAATTTATCTGTCGTGATTTTTGAAAACGATAATTAATTTGAATTATTTGTTGTTTTAGAAGTCGAAGATAAAAATTTATCTCATTTTTTATTTTATACTTACTGTTTTCAAAGACTACGAATATTTTAAATTATGGATAATGTAATGACAATTAAAATATTATAAAAGAAAAAAGATATTCATATAATTTGAGACGGAGAACGGAATAGGCCACCCGCTAGGCGTAGAGTTTGTTTTTTTTCCTTGAATTATATTAATTGAATCAATTTTTCTTTTAAAAAGTATTTATGAACATTTATGCTAAGTTTCTATCAATAATTACCATTAGAAAAATATGTCGCAAATTAAATTGTTGCTTCTAGCTTGTAGCTTGTAGGGCTAAACTTACCAAAAGTCAAATTTACTTTTTTTTTTAGAAAAATTAGGTATTTAACCAAATTATTGGGGGGGAGGGGGGGAGGTGTTTTTGAGTAATAGCACAAATTATTTTTTAGAAGTTGAAAAAACTATATTTTGGAGCATTAAATAACACAAATTATTGTTTTTATAGTGATTAAAGTATTTTAAAATTGATTAATCAAATATAAATTCATAATTTAAGAGCTAGCACAACAACTCATTAGAGTTATGGTAAAGTGATAAGTATTTCTTTATTTTTAATCATAAATTTCGAGTTTAAATTGTCGTGATATAAGATCATCTTTATTAGAGAACACTTTAATTCTAATAAGAAACTATCTTTCGGACACAAATTTAAATTTACTCGAACCCCAACAGAAAAACAAACATAAGGATGTTGTATGGTACTTGCTTCTTCTTCTTCTAGAAATGAAGCATTTATGCCATTAAATAAGGTTTTAATTTTGCATATAACATTAATATAGTTGTCTCTTATAGTAGACTCTTTCAACACATTGTTCCTTAATTTAATAACCATTTGCTCTTATTGATTTTCATAGTATGGCCACATTGATAACATTTACACATTTACACCATTAGATAAGATTTTGTGCATAGTGGCCTTTAAGATTCTCATTTTTTTAATAGCCACTTTGAATGAACTTCTACAACCTTGATCTAACCTCGATTTCTACAATGTCCAATTAGTAATATAGCCACTTTCTTCTTCATTAATGTGGATTCCATGATTGATGGTGAATGCACAAACACTCATTGTTTTCAAACTTAGACTTTACTACTTATTTATATTTATTTTTAAATGTAGTTAAAAATATGTCCGAAATTATACTCCCTTCGTCCCATTTATGTGAGATAGTTTAACTCGGCACGGAGTTTAATAAAGAAAGGAAGACTTTTAAAATCTATGGTCCAAAATGAATAATTGAAATTTGTGTGACTGTAAATCATTTCATCAAAGGTAAAATAGATATTTTATTGTTAAATTATCACTTTATGTATAAATATGTCATTCTTTACGAGACCGACTAAAAAATAAAAGTAAGTCACATAAATTGGGACAGAGGGAGTACAATTTTTTCAAGAAATAATTGTAAATATTATGGGTAAGGAAAGATGAAATAGGCAAAGAGATTACGAAATAAAGAACCGTGTAATCATATTAAAAACACCTTTAAACATGACGTGAATTATTGACAGTTTTAAAGACAATCCTTTACTTGTACTAAACATAAAACTCAAATCATACAACATGAATGAGTGAATATACTCCTAAATGCTCGTCTAGTTTAGGAATGTTTTCAGCTCTTCTTTTGACTTTTTATTACATGTCTCGTGCTACTATAAGAGTTTATTACCACACGTTATATCATGCTATGAATCGAGGTATATCTATGTTTAGTTAGTCAACTAGAAAAATGATTTTGTAAGGCGATTAATAATTCAGATACGAAACTAATAATCTATGTTAAATTTATAATTGTCTTCGATTTTTATATCTAAAGAAATTAAACTCTCGTTAAATAAGTCATAATCAATTAACTGAGTTACTACAATTCCGCTAAAATATTATAATATAAAGTTTTGGTGGGCTATGAGTTAGTAGTATTTACTTGTATTTTTTAAAATTTTAACATGTGTTTCATGTGTAGGGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAATCACCAAATCCCGGCCGCCGCCGCCGCCAAACACCACCATCACAACCACCCTACTACCACCACCAGTTCACCCACTACCTCTACCGGCACCGCCGGAGACAATAATGCTACTGCGGCTGTAGCCACGGACTCTACCGTAGTAGACAAATCATCCCCCGAAGAACCAGATCTATTTGCTTATCAACACGATAATGGATTTTCAGAGCTCGCCGGTGAGTTAGGTTGGTTTTCCGATATGGGAACAACAACTACGTTTATGGAGAGTACGTCGTCGTCCATGGCGGGATCCACGTGGAACGACAGTGACGTGGCGTTAATGTTGCCGATTCGAGAAGAGGATCAGTCGTTGTACGGTGATCTCGGTGAATTACCGGAATGTTCAGTTGTTTTCCGGCGGTACAGTGTGGAAACTCCCTGCTGCGGAGGTACAGGATAACAAATCATTTGTCAATTTTTCACTGAAATTGCCATATTTTTATTTTTTAATTATCTTCCTGACTTTTGGTTCCACGTTCTTCGTGACCCTTTTTTTTAATTTTATTTTTATGTAAAGATCTGGTAGATTAAAAAAAAAAAGAAATATACTTTGATTTGATTTTTACTTGAAGCCATTGAGCTGCTTTTGTAATTTTTACAATAAAAATATAGTCTAAATTTGAAGATTATAAATTTAAAATTTTCGTTATTTTAGTCAAAATTATCAAATCATAATAAAAAAAGCTAAGATCACTCTCTAATCTCTATTCACATTTTGGAGGCCTACTTATTGCTTTACAAAGATATTTGGTGCCTGGCGGCTTATTTGGTTCCCTTTTTTTTGACTTATTGGACTATTTTCATTTTTTTCTGTTTGATAAAAACAAATACTTTTTTTAAAAAAAAAAAAAAACTATATTCAA</genome_strand>
        <mrna_strand>CTTTTTATTTTCTCTCATTTTTTCTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAG......................................................................................................................................................................................................................TAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAATCACCAAATCCCGGCCGCCGCCGCCGCCAAACACCACCATCACAACCACCCTACTACCACCACCAGTTCACCCACTACCTCTACCGGCACCGCCGGAGACAATAATGCTACTGCGGCTGTAGCCACGGACTCTACCGTAGTAGACAAATCATCCCCCGAAGAACCAGATCTATTTGCTTATCAACACGATAATGGATTTTCAGAGCTCGCCGGTGAGTTAGGTTGGTTTTCCGATATGGGAACAACAACTACGTTTATGGAGAGTACGTCGTCGTCCATGGCGGGATCCACGTGGAACGACAGTGACGTGGCGTTAATGTTGCCGATTCGAGAAGAGGATCAGTCGTTGTACGGTGATCTCGGTGAATTACCGGAATGTTCAGTTGTTTTCCGGCGGTACAGTGTGGAAACTCCCTGCTGCGGAGGTACAGGATAACAAATCATTTGTCAATTTTTCACTGAAATTGCCATATTTTTATTTTTTAATTATCTTCCTGACTTTTGGTTCCACGTTCTTCGTGACCCTTTTTTTTAATTTTATTTTTATGTAAAGATCTGGTAGATTAAAAAAAAAAAGAAATATACTTTGATTTGATTTTTACTTGAA............................................................................................................................................................................................................................................................................AAACAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327974" ref_strand="+" ref_description="SGN-U327974        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT5G05340.1 | Symbol: None | peroxidase, putative, similar to peroxidase (Nicotiana tabacum) gi:5381253:dbj:BAA82306; similar to Peroxidase P7 (Brassica rapa (Turnip)) SWISS-PROT:P00434 | chr5:1578952-1580876 REVERSE | Aliases: K18I23.14, K18I23_14 (evalue: 6e-45, score=176) genbank/nr: gi|5453379|gb|AAD43561.1| bacterial-induced peroxidase precursor [Gossypium hirsutum](evalue: 6e-50, score=198)">
      <seq>ctgagatccgccattaaacaattcctgatccgattgaagcaatccacgccgagcctctaagttttgataatatttattatcgaattggctcggcgtctggatatctaacggggctaaattactgtctccgccagatgcagggcatgtggccccgagtgtggcggcgaattctgagttgatgttggtggcgttgttgacgcggtcgcggaaactggcgcatcgggcttggccgattgtgtggctgccggagagggcggtcatctcggcggcgttaaggcctttggcggagaacatggagatcaaagttgaaagggtggaagttggcatagggatttgggcgttggcggagcttaggcttgcggttcttgcgtctcttcggcccaattgcacggtccatgttggccctcctagctgcgtaaatacgatgttataaatatatatttaaatttgtataaaattaatttaataaaaaaaatatattttgtttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="44142" stop="45230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44442" g_stop="44931" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-U327974" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44442" e_stop="44931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGATCCGCCATTAAACAATTCCTGATCCGATTGAAGCAATCCACGCCGAGCCTCTAAGTTTTGATAATATTTATTATCGAATTGGCTCGGCGTCTGGATATCTAACGGGGCTAAATTACTGTCTCCGCCAGATGCAGGGCATGTGGCCCCGAGTGTGGCGGCGAATTCTGAGTTGATGTTGGTGGCGTTGTTGACGCGGTCGCGGAAACTGGCGCATCGGGCTTGGCCGATTGTGTGGCTGCCGGAGAGGGCGGTCATCTCGGCGGCGTTAAGGCCTTTGGCGGAGAACATGGAGATCAAAGTTGAAAGGGTGGAAGTTGGCATAGGGATTTGGGCGTTGGCGGAGCTTAGGCTTGCGGTTCTTGCGTCTCTTCGGCCCAATTGCACGGTCCATGTTGGCCCTCCTAGCTGCGTAAATACGATGTTATAAATATATATTTAAATTTGTATAAAATTAATTTAATAAAAAAAATATATTTTGTTTGAC</genome_strand>
        <mrna_strand>CTGAGATCCGCCATTAAACAATTCCTGATCCGATTGAAGCAATCCACGCCGAGCCTCTAAGTTTTGATAATATTTATTATCGAATTGGCTCGGCGTCTGGATATCTAACGGGGCTAAATTACTGTCTCCGCCAGATGCAGGGCATGTGGCCCCGAGTGTGGCGGCGAATTCTGAGTTGATGTTGGTGGCGTTGTTGACGCGGTCGCGGAAACTGGCGCATCGGGCTTGGCCGATTGTGTGGCTGCCGGAGAGGGCGGTCATCTCGGCGGCGTTAAGGCCTTTGGCGGAGAACATGGAGATCAAAGTTGAAAGGGTGGAAGTTGGCATAGGGATTTGGGCGTTGGCGGAGCTTAGGCTTGCGGTTCTTGCGTCTCTTCGGCCCAATTGCACGGTCCATGTTGGCCCTCCTAGCTGCGTAAATACGATGTTATAAATATATATTTAAATTTGTATAAAATTAATTTAATAAAAAAAATATATTTTGTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326054" ref_strand="+" ref_description="SGN-U326054        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT3G58690.1 | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr3:21720168-21722358 FORWARD | Aliases: T20N10.40 (evalue: 1e-136, score=483) genbank/nr: gi|42566031|ref|NP_191428.3| protein kinase family protein [Arabidopsis thaliana](evalue: 8e-135, score=483)">
      <seq>aaaaaagaagactgttttgtgactcagtcccatttagtcttgtcaacatcacaggactagtattgtacttcttaaacttctctctttaatggcttctctataacccctctttgggtgttttcccttttctttgctagcaccatggaagcagaaaatgatgagtaccataagaaagaaagggcaattgcagttactatactggtctttgcttctcttgccattgcttctttgtttgtagcctttagttactattgttatatccgtaataaagttgccaagcgtctcaagaaccgcacttatacggagagtgcttgtgaggacaagggcaatagtttctccaatctggaagttattgcagagaagggacttcaggttttcacatttaagcagctgcattcagcaactggtggatttggaaaatctaatgtgattggaaatggtgctttcgggtcagtatatagaggagtacttcaagatggtaggaaggttgcaattaagctgatggatcaggctggaaaacagggggaggaagaattcaaagtggaggtggagttgctatgccgcttgcgctcaccgtatttgctgtcattgattggctattgttcagaaagcagccataaattgcttgtatatgagttcatggcaaatggtggtttacaggagcacttgtatccaatcaaaggttccaataatttttgtccaaagttggactggaagacccggttaagaatagcgttggaggctgctaaaggtttggaatatctacatgagcatgtcaatcccccagttatacatagagacctcaaaagtagcaatattcttttggacaaaaatttccatgccaaagtttctgacttcggattggccaagcttggatctgataaagctggtggacatgtctctacccgagttttgggaacacagggatatgttgctccagaatatgcattaacaggacacttgaccaccaaatcagatgtttacagttatggggttgtcctcctagagttgttgacagggagagttccagttgatatgaagagatctcctggcgaaggcgttcttgtttcttgggcattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="54822" stop="50924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54522" g_stop="54225" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54224" i_stop="52931" i_length="1294">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52930" g_stop="52683" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="546" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52682" i_stop="52359" i_length="324">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52358" g_stop="52223" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="682" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52222" i_stop="51767" i_length="456">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51766" g_stop="51508" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="941" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51507" i_stop="51360" i_length="148">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51359" g_stop="51227" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="942" r_stop="1074" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51226" i_stop="51104" i_length="123">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.567" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51103" g_stop="51097" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1075" r_stop="1081" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-U326054" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1081</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54522" e_stop="54225"/>
          <exon e_start="52930" e_stop="52683"/>
          <exon e_start="52358" e_stop="52223"/>
          <exon e_start="51766" e_stop="51508"/>
          <exon e_start="51359" e_stop="51227"/>
          <exon e_start="51103" e_stop="51097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAAGACTGTTTTGTGACTCAGTCCCATTTAGTCTTGTCAACATCACAGGACTAGTATTGTACTTCTTAAACTTCTCTCTTTAATGGCTTCTCTATAACCCCTCTTTGGGTGTTTTCCCTTTTCTTTGCTAGCACCATGGAAGCAGAAAATGATGAGTACCATAAGAAAGAAAGGGCAATTGCAGTTACTATACTGGTCTTTGCTTCTCTTGCCATTGCTTCTTTGTTTGTAGCCTNTAGTTACTATTGTTATATCCGTAATAAAGTTGCCAAGCGTCTCAAGAACCGCACTTGTAAGTATTGTTTTTATAATTTTTGTAAGGTGGTTACCAGTGTTTTCAAGAATTAGGTACATTTTTTGAGTTGTGGCTTTGGGGGGTTCTTGAATATTGCAGAAAGTTTTAATCTTTATGAAGATATAGGTTGAAATGGAAGGTGGGGTGGGGGGTGGGGGTCAGTTTTTTTCCCTTTTAGGAAAAGAAAAGAAGAAACAGACAATGTCATTGTGACTATTGGAAAAGATTGCATTTCATATTTTCTTGAGTTGTGGCTTTTGTGTTCTTGAATGTATTGCAGAAAGTTTTGATCTTTTGGAAGATAAGAGTTGAAATGGGAGGGTGGGGTGGGGGAGGGTTCAGTTTTTCCACTTTTAGGAAAAGAAAAGAAGAAACACACATTGTCATTGTGACTAATGGAAAGGATTGCATTACATATTCTTGAGTTGTGGTTTTTGTGTTCTTGAAAGTATTGCAGAAAGTTTTGATCTTTAGGAAGATAAGGGTCAAGAGGGGATTGCACTGAGCTAAGGGAGAAAAGAAGAAAGGTAAGGGTAGATGGGATGGAGGGTTTGGGGGAGGGGGTCCATTTTTTTTAGGGAAAGAAAAGAAGAAACTTGCATTTTCACTATGACAAATGGAAAAGCTGTAATGTTGGTTACAGTATTGTTGAAATTCTGAGTGAAATGCCTTAATGTCTGGAAGCAGATTAAATTTCCTCAACTTAATGGAGAAGATTTCTCTAACTGACCATGACTAGTTTGGAATTGAGCCTTAATTGTAGTTGATTAATTAGCACTGATTGTCAAACTTGTTTTACTGAAAATATGCTTCCTAATGCTCAAATTTACACCATGCTCATTGTGCTTTAGTAGTTGTTAGTAGAATTAGCACTAATCCTCCGGCTTGTTGACTGAAAAATGCTTCCTAATGCACAAATTATTACCCTGCTCTCTGTGCTTTAGTAGTTGTAAGTTAATGATTAGCACTAATCTTCCTGCTTATTATACTGAGAAAATGCTTCCTAATGCACAAATTTACACCCTGCTCACTATGCTTTAGTAGTTGTTAATAAAGTTAGCACTAATCTTCCGTCTTGTTATACTGAGGAAATGTTTCTTTATGCACAAGTTTTTCACCCTCGACACTGTGCTCTATTAGTTGTTTATAAAACTAGCTCAAACTGTTTGGCTTGTGCTGTATAGGAAGTGCTTCCTAAGGCACAATTTTACACCTTCACATTGTGTTTTTCTGTGTCAGTTCATGTTTTGGGAAAGCTTAAGTCTTGATACATTTTTGTTACTCCATCCAGATACGGAGAGTGCTTGTGAGGACAAGGGCAATAGTTTCTCCAATCTGGAAGTTATTGCAGAGAAGGGACTTCAGGTTTTCACATTTAAGCAGCTGCATTCAGCAACTGGTGGATTTGGAAAATCTAATGTGATTGGAAATGGTGCTTTCGGGTCAGTATATAGAGGAGTACTTCAAGATGGTAGGAAGGTTGCAATTAAGCTGATGGATCAGGCTGGAAAACAGGGGGAGGAAGAATTCAAAGTGGAGGTAATTGCAAATATAAATTCAATATAATCCATAAGAAGATGTGATCTTGTCTCGTCATTAGCAAGAAAACAAATACACAAATGTCCTGATCTTCGAAAGATATCACGTTAGGATGTAATCTAATATAAAGCAAATTGTCTTTCCAATGCTATATGAGTTTCTAAGATTTTTCGACCGTGTGTCAAACAGTTAAAAAGTACAGAGTTTCAGTTGAACCTTTTTTAAAACTCCAAGAAGAGTTAAAGGACTCTGATTATTCTTTTACATGTTGTTTTATTGCCTCTCTTTTACTTTGGTGAAATGATTGCTGTTATCAAATATCAGGTGGAGTTGCTATGCCGCTTGCGCTCACCGTATTTGCTGTCATTGATTGGCTATTGTTCAGAAAGCAGCCATAAATTGCTTGTATATGAGTTCATGGCAAATGGTGGTTTACAGGAGCACTTGTATCCAATCAAAGGTCTGTTTGGTTTTCAGTTGTATATGGTTTTGGGCATTTTTGGAATTTAGTACCAGCCTGCCTTCTCTGCTTGAAAAGCCAATGTGGAAAAAATACTTCATAGATATGGCAGTGATGAATGGATATCCTCATCAAGTGACATTCTGAGACATATCAAAGTTTGTCATATGCATAAAATGAGTGATTTTTTCTGGTGTCCTCGTCAGTAATTGAGATTATTCTCTGAAGTGTAGAAAACCACACACTAAATTATATGTTATGAAACCAACTCCAAAGGGAACAAAGGAAGTCTTTTCCTGAAATTCTACTGGCATGTGAAATTCGTGTTTACTGTGTACTGTTCCTAGTTGTGCAAAATGGCCTGTTCCTATTCTTACACCTTCTTTTCACATTGTTTCGAGTTTTTCTTTTCAAGTCATCAAGTTATTAATGAAAGTGTTGCACTTCAATCTGTAGGTTCCAATAATTTTTGTCCAAAGTTGGACTGGAAGACCCGGTTAAGAATAGCGTTGGAGGCTGCTAAAGGTTTGGAATATCTACATGAGCATGTCAATCCCCCAGTTATACATAGAGACCTCAAAAGTAGCAATATTCTTTTGGACAAAAATTTCCATGCCAAAGTTTCTGACTTCGGATTGGCCAAGCTTGGATCTGATAAAGCTGGTGGACATGTCTCTACCCGAGTTTTGGGAACACAGGGATATGTTGCTCCAGAGTAAGAACCCTTCATTTAGCTGAAATATGTTAGATTATAGCAGTTCCATGCGTAATCGTTGAGGTGATGTCTTCTCTTAACTTACCAGTACCTTTTTATGTGAGATTTTAACGTATCAATGTCGATTTCTTCCATTGAACCATTGCAGATATGCATTAACAGGACACTTGACCACCAAATCAGATGTTTACAGTTATGGGGTTGTCCTCCTAGAGTTGTTGACAGGGAGAGTTCCAGTTGATATGAAGAGATCTCCTGGCGAAGGCGTTCTTGTTTCTTGGGTAGGTTCTCGTAAATGTTGTAAGCATACTATCCTACATTTTCAGACATTCTTCTGTCTAATGTCCCATAGGCCGCGCTAGTGAATTGAAACGTTTCTCCAGCTGACCTCTTCCTATTCTTAGGCATTGC</genome_strand>
        <mrna_strand>AAAAAAGAAGACTGTTTTGTGACTCAGTCCCATTTAGTCTTGTCAACATCACAGGACTAGTATTGTACTTCTTAAACTTCTCTCTTTAATGGCTTCTCTATAACCCCTCTTTGGGTGTTTTCCCTTTTCTTTGCTAGCACCATGGAAGCAGAAAATGATGAGTACCATAAGAAAGAAAGGGCAATTGCAGTTACTATACTGGTCTTTGCTTCTCTTGCCATTGCTTCTTTGTTTGTAGCCTTTAGTTACTATTGTTATATCCGTAATAAAGTTGCCAAGCGTCTCAAGAACCGCACTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGAGAGTGCTTGTGAGGACAAGGGCAATAGTTTCTCCAATCTGGAAGTTATTGCAGAGAAGGGACTTCAGGTTTTCACATTTAAGCAGCTGCATTCAGCAACTGGTGGATTTGGAAAATCTAATGTGATTGGAAATGGTGCTTTCGGGTCAGTATATAGAGGAGTACTTCAAGATGGTAGGAAGGTTGCAATTAAGCTGATGGATCAGGCTGGAAAACAGGGGGAGGAAGAATTCAAAGTGGAG....................................................................................................................................................................................................................................................................................................................................GTGGAGTTGCTATGCCGCTTGCGCTCACCGTATTTGCTGTCATTGATTGGCTATTGTTCAGAAAGCAGCCATAAATTGCTTGTATATGAGTTCATGGCAAATGGTGGTTTACAGGAGCACTTGTATCCAATCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAATAATTTTTGTCCAAAGTTGGACTGGAAGACCCGGTTAAGAATAGCGTTGGAGGCTGCTAAAGGTTTGGAATATCTACATGAGCATGTCAATCCCCCAGTTATACATAGAGACCTCAAAAGTAGCAATATTCTTTTGGACAAAAATTTCCATGCCAAAGTTTCTGACTTCGGATTGGCCAAGCTTGGATCTGATAAAGCTGGTGGACATGTCTCTACCCGAGTTTTGGGAACACAGGGATATGTTGCTCCAGA....................................................................................................................................................ATATGCATTAACAGGACACTTGACCACCAAATCAGATGTTTACAGTTATGGGGTTGTCCTCCTAGAGTTGTTGACAGGGAGAGTTCCAGTTGATATGAAGAGATCTCCTGGCGAAGGCGTTCTTGTTTCTTGG...........................................................................................................................GCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340982" ref_strand="+" ref_description="SGN-U340982        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | lipase, putative, similar to lipase (Dianthus caryophyllus) GI:4103627; contains Pfam profile PF01764: Lipase | chr2:17783318-17784794 REVERSE | Aliases: F14N22.2(evalue: 2e-50, score=196) genbank/nr: gi|15227978|ref|NP_181797.1| lipase, putative [Arabidopsis thaliana] gi|25408806|pir||A84857 probable lipase [imported] - Arabidopsis thaliana gi|4512683|gb|AAD21737.1| putative lipase [Arabidopsis thaliana] gi|15293129|gb|AAK93675.1| putative lipase [Arabidopsis thaliana] gi|19310713|gb|AAL85087.1| putative lipase [Arabidopsis thaliana] gi|20198071|gb|AAM15382.1| putative lipase [Arabidopsis thaliana](evalue: 1e-48, score=196)">
      <seq>ttctgatagtggaaaaggcacaaaaatggggaaagaaccaacatggcatgaattactaggaagcaacaactgggaaggtcttcttgaaccattacacctcaatctccggcgactcatactccggtgcggcgacttttgtcaagcaacttacgacgccttcaacaatgacgaatactccatgtactgtggcagtagtcgttacggtaaaagttcacttttccacaaagtcatgttcaaatccgcctcagattaccaaatcgtcagcttcctttacaccactgctcgtgttggtgcccataaagccctcttcctccactctctttctcgtgaatcatgggatcgtgaatccaattggatcgggtttatagctataactaacgacgaaatcattgaacaactgggtcgtcgtgaaatctacatagcatttcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="57852" stop="58882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58152" g_stop="58582" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-U340982" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58152" e_stop="58582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGATAGTGGAAAAGGCACAAAAATGGGGAAAGAACCAACATGGCATGAATTACTAGGAAGCAACAACTGGGAAGGTCTTCTTGAACCATTACACCTCAATCTCCGGCGACTCATACTCCGGTGCGGCGACTTTTGTCAAGCAACTTACGACGCCTTCAACAATGACGAATACTCCATGTACTGTGGCAGTAGTCGTTACGGTAAAAGTTCACTTTTCCACAAAGTCATGTTCAAATCCGCCTCAGATTACCAAATCGTCAGCTTCCTTTACGCCACTGCTCGTGTTGGTGCCCATAAAGCCCTCTTCCTCCACTCTCTTTCTCGTGAATCATGGGATCGTGAATCCAATTGGATCGGGTTTATAGCTATAACTAACGACGAAATCAGTGAACAACTGGGTCGTCGTGAAATCTACATAGCATTTCGTG</genome_strand>
        <mrna_strand>TTCTGATAGTGGAAAAGGCACAAAAATGGGGAAAGAACCAACATGGCATGAATTACTAGGAAGCAACAACTGGGAAGGTCTTCTTGAACCATTACACCTCAATCTCCGGCGACTCATACTCCGGTGCGGCGACTTTTGTCAAGCAACTTACGACGCCTTCAACAATGACGAATACTCCATGTACTGTGGCAGTAGTCGTTACGGTAAAAGTTCACTTTTCCACAAAGTCATGTTCAAATCCGCCTCAGATTACCAAATCGTCAGCTTCCTTTACACCACTGCTCGTGTTGGTGCCCATAAAGCCCTCTTCCTCCACTCTCTTTCTCGTGAATCATGGGATCGTGAATCCAATTGGATCGGGTTTATAGCTATAACTAACGACGAAATCATTGAACAACTGGGTCGTCGTGAAATCTACATAGCATTTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317439" ref_strand="+" ref_description="SGN-U317439        Tomato 200607 #1 [20 ESTs aligned] arabidopsis/peptide: AT2G30980.1 | Symbol: None | shaggy-related protein kinase delta / ASK-delta / ASK-dzeta (ASK4), identical to shaggy-related protein kinase delta (ASK-delta) (ASK- dzeta) (Arabidopsis thaliana) SWISS-PROT:Q39010 | chr2:13189148-13193026 REVERSE | Aliases: F7F1.19, F7F1_19 (evalue: 0, score=711) genbank/nr: Protein(evalue: 0, score=721)">
      <seq>tgaagagtagcagaggagaagagagcacatggcctcgataccgctgggacctcagcaccataatccgccggaaaatcaccatcaccaccaccttcagccgccgccgcagctcgtgcagcagcagcagcaacagcctgtgaatcgtgaactaggaggaggaggaggagctgcagtaaggaacgccggagcacgaccggaaatggaatccgaaaaggaaatgtcagctgctgttgttgagggtaatggtgccgtcactggtcacataatttccaccaccattggaggcaagaatggagaaccaaaaaggaccatcagttatatggcagagcgagttgtcggtacagggtcctttgggatagtgtttcaggcaaaatgcttggaaactggagagactgtggccataaagaaggttttacaggacaaacggtataaaaatcgtgaactacaactgatgcgcttgatggatcacccaaatgtcattactctaaagcactgcttcttttccacgactagtagagatgagctttttcttaatttggtcatggattatgtccctgaaagtttatacaaggttttaaagcactatagcaattcaaatcaaaggatgccactcatatatgtcaaactttacatgtatcagatattcagagggctggcttacattcataatgttccaaggatttgccatagagatgtgaaacctcaaaatcttttggttgatcctctgacccatcaagtcaagctgtgtgattttggaagtgcaaaagtcctggtaaatggtgaagcaaatatttcatacatttgctctcgctactacagagctccagaactcatatttggtgccacagagtatacaacatcaattgatatttggtcagcaggctgtgtccttgctgagcttcttctggggcagccgctctttcctggcgaaaatgcagtagatcaactggtggagatcatcaaggtccttggtactcctactcgggaagaaattcgatgtatgaacccaaactacacagatttcagattcccacagataaaagctcatccttggcacaaggtattccataaaagaatgcctcctgaagcaattgatcttgcctcacggcttcttcaatattcaccaagtcttcgctgtactgcactagaagcatgtgcacattcgttctttgatgagcttcgtgagcccaatgcccgtctccctaatggacgtccatttccacctcttttcaactttaaacaagagttaactggagcttcacctgatttggtcaacaagctgatccctgagcatgtgtggaggcaacttggtttgaatttcccatttcctggtgcgacgtaattgtactaatgtaatatagagttggtgtatcagaaaaaatatatagggagtccttgtggattaatgtaaccatgcattttggcgtaaccagtggctatgcacgcatgtaaaagttgtatgcatatagccgctgtttggcttacaagaagtgatcctgtctctacttgtgtcctcttttagctaatagcagacctgttgcctcttttgtacattgtttttgataagaagaattcagataggagtataaagtgataaatattgtaatgtctagttaagcagatttccttgagagaccttctggagcactaggacttgtagctttgggttgtagttatatttatatgcaagttgtttttagctctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="63709" stop="69115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64009" g_stop="64222" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65122" g_stop="65214" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="307" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65373" g_stop="65432" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="367" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65508" g_stop="65780" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="640" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65781" i_stop="65856" i_length="76">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65857" g_stop="65931" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="715" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65932" i_stop="66007" i_length="76">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66008" g_stop="66064" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="772" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="66065" i_stop="66532" i_length="468">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66533" g_stop="66673" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="913" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="66674" i_stop="66774" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66775" g_stop="66825" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="914" r_stop="964" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66826" i_stop="66906" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.051" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66907" g_stop="67002" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="965" r_stop="1060" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="67003" i_stop="67135" i_length="133">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="67136" g_stop="67219" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1061" r_stop="1144" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="67220" i_stop="67317" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="67318" g_stop="67419" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1145" r_stop="1246" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="67420" i_stop="68356" i_length="937">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="68357" g_stop="68814" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1247" r_stop="1704" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1705" polyA_stop="1722"/>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-U317439" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1704</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64009" e_stop="64222"/>
          <exon e_start="65122" e_stop="65214"/>
          <exon e_start="65373" e_stop="65432"/>
          <exon e_start="65508" e_stop="65780"/>
          <exon e_start="65857" e_stop="65931"/>
          <exon e_start="66008" e_stop="66064"/>
          <exon e_start="66533" e_stop="66673"/>
          <exon e_start="66775" e_stop="66825"/>
          <exon e_start="66907" e_stop="67002"/>
          <exon e_start="67136" e_stop="67219"/>
          <exon e_start="67318" e_stop="67419"/>
          <exon e_start="68357" e_stop="68814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAGTAGCAGAGGAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAGGTAGTTCTACTACTTTAATGTCCTCCGACTATTACTAGAGAGTCGCACACTCTTGTTCTACTTCAATTCTATATGCTGATGAAGTTTGACAGTATCGGTTTATGTTCGTTGTGCTTCGATCTAGCTCGATCTCTTTGTGTTCAGTTGTTCTCCGGTATCGGAAAGTTCGCCGGAATATTTTTCCGGCGAGGCAATTTTTTTGAGCTTGTTGCTTCAGTGAGGTGTTCTTCGCTCTATATTTGAAATTTCAGGTGGACTTTGAGTATGAGGTGTTTTTAGTTTTGATTTCCTTTTTATTTTTGACATTTTTGTTGTAGCTCTTAAGATTTTAAATTAAATTTATTTTTGAGTAGCTTCTGCTTCTGGCTTTTAGTTTAATTTACCAGAAAATGATTCTTTGTTTGCTTGTGTTTGTTCTATCTGGAGTTTCTACTGTAGCTGATTTTGGGGGTAGAGTGCATGTATAGAGTTAGATCCATGTGATTCTTTTGTGGAGTAGCGACTTCTTTATCCTGTTATCTACTTTGTGTATCTGGGATTACAAGGGACAGGTTTTCTTGAGTTGATTAGGTAGCTTGCAAGTCCCTCTTTCAGAAAAAGCTATTTAGCTGCTTTTCTTCATCTTTAGGTAAATTGTGCTTCAATCTTTTATTGGGTTTGCTTCATGTGAATTGTGATGGCTGATTCTCCTTTAGTACTGTTTTTGTCTTAGTTACAAGTCTCTATTATTTGATGCTTTCTTAAAGCCTATTTAAGTGCCATTCACTGCTTTTCTATTTTTGTTGAACAACCTGTAAGGTCCTCTGACAGGTTATGGTAAGTTGAGCTTCTTACTATTTTCTAAACGAGATGGAGTTCTTTTTGGCACTGCAATTCACCTTGCTTGGTTTGCATTGTAGGAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGGGTGTGTGCCTGATATATATCAGTTTCTTTGTTTAAATTGGAGATTCAATGTTTTGTAATTTCTTGGTTCTTAGATATTATGACTCTGATCACTGGTGTCAATGGTCGTGACTTGTGAGAGTATTAAGTAACAGAATCTGATGAGATCTTTTTCTGCAGACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAGGTTTGTGAGCTGACTTTATTGTAAATTTGCAGCAGTCTTCTTCTACGTTGCAAGACTTGATGTTGTTGTCTCTAGGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAGGTTTGCATATCTCCTTTCTCTTTATGCCTCTTCTGCAACTGGATATTATGTGATTCTGATAAGTTGTTACTGTCAGATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTGGTATGTGAACAGGAGTCCACTTCATTCCTATTGTATGCAATCATCAATCTAAATCTCTATTGTATGTCATTTGAAGGTTGATCCTCTGACCCATCAAGTCAAGCTGTGTGATTTTGGAAGTGCAAAAGTCCTGGTATGTCTGTTTTTTCATAATTATTACGTCCTTATAAGTGCTGCATTATGCAAAGATTCTTTGAAGGTGCTTTAGTGTCATGATAGTAGTCTGTTTTTCATGTGCTTGACTGCACGAGTTGGTGCTGATTAAGGCACTGTCTGAAGACATTTCAGTTTTTAAACATTTGATACTTTTTTGACCCTTGGCTGTCAGGTTCTTAGATCTCTTGTTTGCAGAACAAGAGAAGTTTTTAACCAATACAATTAGGTTTTGACATGCGAGTTTGGATGTATTATTACTCTTGACAGTGGGAACGAGAGCAGAACTAGTTTCTAGCATTTCAGAATTCTCTGCTCAAAAACTGCAATACTTTTCCTTGCATTTTTTTTCTTTTTTTGCATGGCTCTTTCCTCGTGGAGAATTGTTTAGCGCATAACATAAACTGAAGCATTTCATTTTGATACTAATGAACTTTTCAATGCACAGGTAAATGGTGAAGCAAATATTTCATACATTTGCTCTCGCTACTACAGAGCTCCAGAACTCATATTTGGTGCCACAGAGTATACAACATCAATTGATATTTGGTCAGCAGGCTGTGTCCTTGCTGAGCTTCTTCTGGGGCAGGTTTGTGTTGTTTATCTTTGTTTGCAAGTGGATATTTCCATCTATTATTTCATTGAAGATTGTTACTTTATTGAGCTTTCATCAATTATAAACTATGACAGCCGCTCTTTCCTGGCGAAAATGCAGTAGATCAACTGGTGGAGATCATCAAGGTGTGTCTTTATACTTCATTGTAGTAAATCTCAGACAACACTTACAGGATCTCTTTTTACTAATGAGAAACCTTGCCACAGGTCCTTGGTACTCCTACTCGGGAAGAAATTCGATGTATGAACCCAAACTACACAGATTTCAGATTCCCACAGATAAAAGCTCATCCTTGGCACAAGGTATTGTTTGTTATTGTTATATTTTGATAGTTATTCTGCACTAGATCATTTTCTTGTTGAAATATGTGTATGTTAACTACCCCTAAAATCAGTTTTATTTGAAACGAGAGCTAAAAGACTTTCATGGTTTCAGGTATTCCATAAAAGAATGCCTCCTGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCAGTAAGTTATCTCATTTTACCAGTGATATTCGTTAATGTTGTTTCATCTACAAAACCGTTTGTTGTATCAGTCTATTTACCTGCTTCTACTCCTTGCAGCTAGAAGCATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAGGTACAATTTTCGGAAACTTCTTAGTTTACTGACTTTGTTATGTTTCTCTGTAACTATTATCTAGAAAGTTATCTTTTGAGTTGTTTATTAAGTGTTGGTTCACTAGTTGAATTTATGATTATGCAGCTCTATGCACCCATCTGAACATTTTTTTCATTGATTAGAGCATTTTTTTTCCTTATCCATTATTTGAATGTTATGAAAACGGAAGGAGGTATTGACGGTGAAGCGGCACATCTTGTTCTCTTGTGAAGTGATAAATACAAGAAACAAACTATTAAAAGTAAATCCTTCTGTGATGAAGGATTTTCAAAGTGAATAATACAAGAAATTGGTGCGTTACATATTAATTCATGATTTCTTCGTGTTCTTCTTGTACTTTAAATGCATCATGCGTCTTGTCGGTTATCTTCTTTTTTCCGTTGCTTTTGATAATCCATTGTCTTTTCCCTCTCAAATAACACTCACTCACGTAATCTTTTGTCCTTCTGCGTTTCAAAATGTGAGACTTTTAAAGATTGTCTACATGTGCATGGATCCAAGCAATCATATTAACTGTGTTTCCAATTATTGTGTAACCATTTAATAAAACTGATTTTGGTGATTGACTGTCACGAGACTTGATCTCGAGTAAAATATGGTTTTAGAAAGTAATCACATTCCCCTACATTTAGCAGATCTTTAGACTTTTACTTCCACGATCTTTAGACAGTAATTTTGGGCTCTCTGTTACTGTCAGAAATATATTGACCAATTACAGAGGTCCCTGTTGTTATGAGGCTGTATTAGATATTTATTGTTATTATTACCAGTTAGACTATGTGTGGTAAGGCTGGCATATGAACCTTGCTTAAATTGATTGAGAGGCGAAACTTCCCTTTATGTAAGATGTTAGGGATCATGAAAGTAATGTTTATGTTCTGGCTGTTGCTTGCAGTTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAATTGTACTAATGTAATATAGAGTTGGTGTATCAGAAAAAATATATAGGGAGTCCTTGTGGATTAATGTAACCATGCATTTTGGCGTAACCAGTGGCTATGCACGCATGTAAAAGTTGTATGCATATAGCCGCTGTTTGGCTTACAAGAAGTGATCCTGTCTCTACTTGTGTCCTCTTTTAGCTAATAGCAGACCTGTTGCCTCTTTTGTACATTGTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAGTTAAGCAGATTTCCTTGAGAGACCTTCTGGAGCACTAGGACTTGTAGCTTTGGGTTGTAGTTATATTTATATGCAAGTTGTTTTTAGCTCT</genome_strand>
        <mrna_strand>TGAAGAGTAGCAGAGGAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGG..............................................................................................................................................................ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG...........................................................................GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAG............................................................................ATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTG............................................................................GTTGATCCTCTGACCCATCAAGTCAAGCTGTGTGATTTTGGAAGTGCAAAAGTCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGGTGAAGCAAATATTTCATACATTTGCTCTCGCTACTACAGAGCTCCAGAACTCATATTTGGTGCCACAGAGTATACAACATCAATTGATATTTGGTCAGCAGGCTGTGTCCTTGCTGAGCTTCTTCTGGGGCAG.....................................................................................................CCGCTCTTTCCTGGCGAAAATGCAGTAGATCAACTGGTGGAGATCATCAAG.................................................................................GTCCTTGGTACTCCTACTCGGGAAGAAATTCGATGTATGAACCCAAACTACACAGATTTCAGATTCCCACAGATAAAAGCTCATCCTTGGCACAAG.....................................................................................................................................GTATTCCATAAAAGAATGCCTCCTGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCA..................................................................................................CTAGAAGCATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAATTGTACTAATGTAATATAGAGTTGGTGTATCAGAAAAAATATATAGGGAGTCCTTGTGGATTAATGTAACCATGCATTTTGGCGTAACCAGTGGCTATGCACGCATGTAAAAGTTGTATGCATATAGCCGCTGTTTGGCTTACAAGAAGTGATCCTGTCTCTACTTGTGTCCTCTTTTAGCTAATAGCAGACCTGTTGCCTCTTTTGTACATTGTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAGTTAAGCAGATTTCCTTGAGAGACCTTCTGGAGCACTAGGACTTGTAGCTTTGGGTTGTAGTTATATTTATATGCAAGTTGTTTTTAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336124" ref_strand="+" ref_description="SGN-U336124        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G30980.1 | Symbol: None | shaggy-related protein kinase delta / ASK-delta / ASK-dzeta (ASK4), identical to shaggy-related protein kinase delta (ASK-delta) (ASK- dzeta) (Arabidopsis thaliana) SWISS-PROT:Q39010 | chr2:13189148-13193026 REVERSE | Aliases: F7F1.19, F7F1_19 (evalue: 6e-65, score=244) genbank/nr: Protein(evalue: 6e-66, score=253)">
      <seq>gatcatcaaggtccttggtactcctactcgggaagaaattcgatgtatgaacccaaactacacagatttcagattcccacagataaaagctcatccttggcacaaggtattccataaaagaatgcctcctgaagcaattgatcttgcctcacggcttcttcaatattcaccaagtcttcgctgtactgcactagaagcatgtgcacattcgttctttgatgagcttcgtgagcccaatgcccgtctccctaatggacgtccatttccacctcttttcaactttaaacaagagttaactggagcttcacctgatttggtcaacaagctgatccctgagcatgtgtggaggcaacttggtttgaatttcccatttcctggtgcgacgtaattgtactaatgtttttgataagaagaattcagataggagtataaagtgataaatattgtaatgtctagttaagcagatttccttgagagaccttctggagcactaggacttgtagctttgggtntgtagttatatttattatgcaagttgtttttagctcaaannanaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="66602" stop="69115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66816" g_stop="66825" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66826" i_stop="66906" i_length="81">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.051" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66907" g_stop="67002" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="106" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67003" i_stop="67135" i_length="133">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67136" g_stop="67219" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="190" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67220" i_stop="67317" i_length="98">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67318" g_stop="67419" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="292" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67420" i_stop="68356" i_length="937">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68357" g_stop="68462" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="398" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68463" i_stop="68665" i_length="203">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68666" g_stop="68814" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="549" r_length="151" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="576"/>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-U336124" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66816" e_stop="66825"/>
          <exon e_start="66907" e_stop="67002"/>
          <exon e_start="67136" e_stop="67219"/>
          <exon e_start="67318" e_stop="67419"/>
          <exon e_start="68357" e_stop="68462"/>
          <exon e_start="68666" e_stop="68814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCATCAAGGTGTGTCTTTATACTTCATTGTAGTAAATCTCAGACAACACTTACAGGATCTCTTTTTACTAATGAGAAACCTTGCCACAGGTCCTTGGTACTCCTACTCGGGAAGAAATTCGATGTATGAACCCAAACTACACAGATTTCAGATTCCCACAGATAAAAGCTCATCCTTGGCACAAGGTATTGTTTGTTATTGTTATATTTTGATAGTTATTCTGCACTAGATCATTTTCTTGTTGAAATATGTGTATGTTAACTACCCCTAAAATCAGTTTTATTTGAAACGAGAGCTAAAAGACTTTCATGGTTTCAGGTATTCCATAAAAGAATGCCTCCTGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCAGTAAGTTATCTCATTTTACCAGTGATATTCGTTAATGTTGTTTCATCTACAAAACCGTTTGTTGTATCAGTCTATTTACCTGCTTCTACTCCTTGCAGCTAGAAGCATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAGGTACAATTTTCGGAAACTTCTTAGTTTACTGACTTTGTTATGTTTCTCTGTAACTATTATCTAGAAAGTTATCTTTTGAGTTGTTTATTAAGTGTTGGTTCACTAGTTGAATTTATGATTATGCAGCTCTATGCACCCATCTGAACATTTTTTTCATTGATTAGAGCATTTTTTTTCCTTATCCATTATTTGAATGTTATGAAAACGGAAGGAGGTATTGACGGTGAAGCGGCACATCTTGTTCTCTTGTGAAGTGATAAATACAAGAAACAAACTATTAAAAGTAAATCCTTCTGTGATGAAGGATTTTCAAAGTGAATAATACAAGAAATTGGTGCGTTACATATTAATTCATGATTTCTTCGTGTTCTTCTTGTACTTTAAATGCATCATGCGTCTTGTCGGTTATCTTCTTTTTTCCGTTGCTTTTGATAATCCATTGTCTTTTCCCTCTCAAATAACACTCACTCACGTAATCTTTTGTCCTTCTGCGTTTCAAAATGTGAGACTTTTAAAGATTGTCTACATGTGCATGGATCCAAGCAATCATATTAACTGTGTTTCCAATTATTGTGTAACCATTTAATAAAACTGATTTTGGTGATTGACTGTCACGAGACTTGATCTCGAGTAAAATATGGTTTTAGAAAGTAATCACATTCCCCTACATTTAGCAGATCTTTAGACTTTTACTTCCACGATCTTTAGACAGTAATTTTGGGCTCTCTGTTACTGTCAGAAATATATTGACCAATTACAGAGGTCCCTGTTGTTATGAGGCTGTATTAGATATTTATTGTTATTATTACCAGTTAGACTATGTGTGGTAAGGCTGGCATATGAACCTTGCTTAAATTGATTGAGAGGCGAAACTTCCCTTTATGTAAGATGTTAGGGATCATGAAAGTAATGTTTATGTTCTGGCTGTTGCTTGCAGTTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAATTGTACTAATGTAATATAGAGTTGGTGTATCAGAAAAAATATATAGGGAGTCCTTGTGGATTAATGTAACCATGCATTTTGGCGTAACCAGTGGCTATGCACGCATGTAAAAGTTGTATGCATATAGCCGCTGTTTGGCTTACAAGAAGTGATCCTGTCTCTACTTGTGTCCTCTTTTAGCTAATAGCAGACCTGTTGCCTCTTTTGTACATTGTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAGTTAAGCAGATTTCCTTGAGAGACCTTCTGGAGCACTAGGACTTGTAGCTTTGGGT-TGTAGTTATATTTA-TATGCAAGTTGTTTTTAGCTCT</genome_strand>
        <mrna_strand>GATCATCAAG.................................................................................GTCCTTGGTACTCCTACTCGGGAAGAAATTCGATGTATGAACCCAAACTACACAGATTTCAGATTCCCACAGATAAAAGCTCATCCTTGGCACAAG.....................................................................................................................................GTATTCCATAAAAGAATGCCTCCTGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCA..................................................................................................CTAGAAGCATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAATTGTACTAAT...........................................................................................................................................................................................................GTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAGTTAAGCAGATTTCCTTGAGAGACCTTCTGGAGCACTAGGACTTGTAGCTTTGGGTNTGTAGTTATATTTATTATGCAAGTTGTTTTTAGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314712" ref_strand="+" ref_description="SGN-U314712        Tomato 200607 #1 [22 ESTs aligned] arabidopsis/peptide: | Symbol: None | aspartate aminotransferase, mitochondrial / transaminase A (ASP1), identical to SP:P46643 Aspartate aminotransferase, mitochondrial precursor (EC 2.6.1.1) (Transaminase A) {Arabidopsis thaliana} | chr2:13185926-13188984 FORWARD | Aliases: F7F1.18, F7F1_18(evalue: 0, score=712) genbank/nr: aspartate(evalue: 0, score=729)">
      <seq>actactcttacgtctcctatttataaagtcccatctctatcaaccgcctctacaaacacgccattttcctctcctatttggccatttctctatatcctctctccgttccggccatggcgatgcgtgccgctatttccggtcgtcaactaaaacttagctcgtcgtcgttcggagcgcgatccctgtcgtcgtggtggcgaaatgttgaaccggctcctaaagatcctatcctcggcgtaactgaagcttttctcgccgatcctagccctgacaaagtcaatgttggcgttggagcttacagggatgacaatggaaaacccgtggtactggagtgtgttagagaagcagagcgaaggatagctggtggtttcaatatggaatatcttcctatgggaggtagtgtcaacatgatccaggagtcgctgaagttagcctatggagagaactcagacttgataaaagataaacgcattgctgcaattcaagcattatctggaacaggcgcatgcagaatttttgcggacttccaaaagcgcttttgtcctgattcacagatttatattcctgttcctacatggtctaatcatcataacatttggagagatgctcacgtccctgagaaaacatatcactattatcatgctgaatcaaagggcttggactttgctgcaatgatggatgatataaagaatgccccaaaaggatcattctttctgcttcatgcttgtgctcataatcctactggggtggatccgacagaggaacaatggagggagatctcgcaccagttcaaggtgaagggacattttgctttgtttgacatggcatatcaaggatttgcaagtgggtatccagagaaggatgctaaagcaatcaggatatttcttgaggatggtcatccgatagcatgtgcccaatcatatgcaaaaaatatggggctatatggtcagagagttggttgcctaagtgttgtctgtgaggatgaaaaacaagcagtggcagtgaaaagtcagttgcagcaacttgccaggcccatgtacagtaatccacctcttcatggtgctcttgttgtttctacaatccttggagatccaaacttgaaaactctatggctcggggaagtgaagggcatggctgatcgtatcatcgggatgagaactgctttaaggggaaatcttgagaagttgggctcacctctatcttgggaacacataaccaaccagattggcatgttctgctacagtgggatgacaccggaacaagtagaccgattgacaaaagagtatcacatctacatgactcgtaatggtcgtatcagtatggcaggagttactactggaaatgttggttacttggcaaacgctattcatgaggttactaaatctgcttaagcgttaacgtcatggattcaataatcagctaaataaaggctgtggaaattcattttttgtgatcggaaagatcacaacatgttgtaaacttgtaatagttgagttaaaactatcgtacggaggggaggggtaataaatagagccattttaaggtgtagaagtcattagcaacgttgaggtggagttgtagttattttagggtacattgcagacattaatcatctctggtgtcaagtagctcctgtttttcatatacaacagcgtagttacatgatatttatgccagcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="74152" stop="69232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73852" g_stop="73563" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73201" g_stop="73116" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="376" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72010" g_stop="71804" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="583" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123">
            <donor d_prob="0.513" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71680" g_stop="71575" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="689" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71574" i_stop="71461" i_length="114">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71356" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="794" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71355" i_stop="71286" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71285" g_stop="71113" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="795" r_stop="967" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71112" i_stop="70551" i_length="562">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70550" g_stop="70391" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="968" r_stop="1127" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70390" i_stop="70290" i_length="101">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70289" g_stop="70194" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1128" r_stop="1223" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="70193" i_stop="70100" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="70099" g_stop="70005" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1224" r_stop="1318" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="70004" i_stop="69893" i_length="112">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="69892" g_stop="69524" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1319" r_stop="1687" r_length="369" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-U314712" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U314712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73852" e_stop="73563"/>
          <exon e_start="73201" e_stop="73116"/>
          <exon e_start="72010" e_stop="71804"/>
          <exon e_start="71680" e_stop="71575"/>
          <exon e_start="71460" e_stop="71356"/>
          <exon e_start="71285" e_stop="71113"/>
          <exon e_start="70550" e_stop="70391"/>
          <exon e_start="70289" e_stop="70194"/>
          <exon e_start="70099" e_stop="70005"/>
          <exon e_start="69892" e_stop="69524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACTCTTACGTCTCCTATTTATAAAGTCCCATCTCTATCAACCGCCTCTACAAACACGCCATTTTCCTCTCCTATTTGGCCATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTTGTAAGTTCTCTGCTCTGTGCTTTGATTTGATTAGCTTTATTTTCTACCTTGTTTTCTCAGTTTTTGTAATCATGGATTTAGCTTCTTAATTTGGGAATTGTGTATGCTTAGCTCTTGTTTTGTTTTGTGTGAGTTAAGATTAATTGAATAGAAGGTTAACTGCTGTAAATCTTATAGTTAAACACATAAGTTGATATATTAGTGTAAAATAATCATCCGTTAGCGGAAAATGATGCAGAGGATTCACACAGTGGATCTCAATTGATTTGGATTTGAAATTCCTGTGTGATCTTATTACTTATGAGCTCGATCTAATTAAGCAAAAACAAATGAGTTTGTTTTTGTTGTTGTGAATTTTAAGGGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATATGTGAGTGAATCTCACCATTTCTCTATTTTGTGAATTTGAATTTGTTGTTCACTTGAAAGGTCCTTTATTCATTATTTAAATTTGACTTCTGTTTTTAGTTATTAAAATTTTGTTAAAGTTTGAATGCATATATCATAGAAAAGTTATTGTAGGTGTATAGCAAAATGTAACAGTACAAATATTTGTCAAGTACTACAAAAGATATATGAATTTATTAAAATTTTTAGCAGCAGCACCATAATATTCATGTAACTGAAAAAAAAAAGATCAAACCTATATAGTTGATTTGGTTTTGATAAAACTGAATCAAACCCCGTGAATACGCCTACAGTGCTGACTATTCTTTATTTTTCTTTTACTAGAGCCACTTGTTGTTGGTTATTGTGCATCAATGACTGTATGTGAGTGCATATTTGAATAATAAAGCATCTCTTTTTAGTATTCCATCTGTCAGTTCCACTGACCTGTTTGATTCTTTAGGTTTTCTTCCTTTCTTTCCGCATCTTGATGATATTTCTATTCTCATTTTTTCTGCTATATGGATGGTGGAGATGGGTCCCTTCACCAATTCTATCTTATACTTTTGTTTAGCTTTTCTACCAAGATGGATTGTTTATATCAAATTTACTATTCCATAGTCTAATGGCGGCGTTTACTTTTGAAATGATCTGTTCTTGTTGTTTGACGAAGTTTGACTTAGATATGGAATACAATTTTATTTGACATGTATATTTTATTCATTGTGATAGAAGAATAATTTAAATAACAAGTGACTTTTTATAATGGTTTTGTAAATTGAAAGTGTAAATGAATTGACTTCATAAACTGACAACTGCTTCTGTCAAACGTTTTGTAGTGTCCTAAAGTAAAAAGTATTATGCAACTTCTCTATGTAAATCAGTAAATGTTCTGATTTTGTCCTCATTCTTTAGAAATCTATTGGATTAATTGACACGGAGTAAAATGCTTTATGTGGAAAGATGGCAATGAATTTGAAAGTAAGAATCAAAATGTTTTCAGCATTGCTAAAAAAAGGCCAGGGTGGTTTATGTGGATATCTTTTAGTTCAGTAATGTGCTTACATGGACAATTCATCATTTACCAGGGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAAGTAAGTACATTTGATGCATCATTGTAGCTTCTTGATTGTTTTTTGCACAGTAAAACATTAGTTTGTGAATGGCTTCATAAATTTCTGATGTCGTAATATTTACTAATATGAGATTCTTGACAGTCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAGGTATGAAACACAGTTGAGATGTTTTTTTTAATGCTTTGGTTCGTTTCATGATATGATGTTTTTCCTCAGATTGCCATTATTTATCCTGACCTATTACAACTTTCTTTTACATAGAATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAGGTAATGACTTGTATATTTTTATCCTCTTTCTTGTCATAAGTCTCATATTGAATTATTGCACTGGTTCTAGGTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCAAGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAAGCAATCAGGATATTTCTTGAGGATGGTCATCCGATAGCATGTGCCCAATCATATGCAAAAAATATGGGGCTATATGGTCAGAGAGTTGGTTGCCTAAGGTAAAATACTACTCCAAAGATATATTATTTGGCCAAGTTATATCTGGAAAAAAGGGGTAAGGCCTATTTAAATCTTGAGCCGAGGGTGTAAACAGAAACAGTCTCTCTATCTTCACTAGATGTAGGGGTAAGGTTGTATAAGCACCACCCTTACCAAACTTCACTTGTGGGATTACACTGGGAACTGTTCTGTTAAGTTATAATCTGGAGAGTAATACTAATCTTTTGTTAATCATAGTTGATCTATCTTTTAAAATTATCTTCTGATTCCAGAATCAGTAGTACTACCATCTTCATGTAGTTTCTAGATCTATTATTTTCTCTTTCGAATGAACAAAACTTCTGTTGAACTTCGTAAATACATTTAGTAATTGTCTTTATTATACCATATATCATATATTGTGTTATAATAAAACCTCATATTCATCTCTATATAGCGTGTACAAGTCTCTTACTAGTCAGAAAGGACTCCTGTCAAACACTGGTCTGATATTTTTAGTCAATATTTGATAAAGCTAAAAGACTTCCAATGTTTTTGCTGTGGTGCCTCAATTTGCTGCAGTGTTGTCTGTGAGGATGAAAAACAAGCAGTGGCAGTGAAAAGTCAGTTGCAGCAACTTGCCAGGCCCATGTACAGTAATCCACCTCTTCATGGTGCTCTTGTTGTTTCTACAATCCTTGGAGATCCAAACTTGAAAACTCTATGGCTCGGGGAAGTGAAGGTTAGTTAATGGTGCTCTGGCTGCTCTTTAGCTTGGTACTCGTTTTCAGAACATCATATGTTAAGCGTAAAATTTCAATGACTTAAAGAGTTTTTTTCCAGGGCATGGCTGATCGTATCATCGGGATGAGAACTGCTTTAAGGGGAAATCTTGAGAAGTTGGGCTCACCTCTATCTTGGGAACACATAACCAACCAGGTATTTGAGATCAACGACTTCCTTCACTTTCTGTAATAGTACGTAACTATAAGAATTCACCTATTGTCCCCTTAATGTTCGATCCTTCCTACAGATTGGCATGTTCTGCTACAGTGGGATGACACCGGAACAAGTAGACCGATTGACAAAAGAGTATCACATCTACATGACTCGTAATGGTCGTATCAGGTATAATTATTGAGTCGTCAAGTTCAAGCTTTTAAGCACCTGTATTCGTATAAAAGTTTATATCTGATTGTTTTTTTCCCAATCTATTTCTTTTGCTTCTTGTATGGTGCAGTATGGCAGGAGTTACTACTGGAAATGTTGGTTACTTGGCAAACGCTATTCATGAGGTTACTAAATCTGCTTAAGCGTTAACGTCATGGATTCAATAATCAGCTAAATAAAGGCTGTGGAAATTCATTTTTTGTGATCGGAAAGATCACAACATGTTGTAAACTTGTAATAGTTGAGTTAAAACTATCGTACGGAGGGGAGGGGTAATAAATAGAGCCATTTTAAGGTGTAGAAGTCATTAGCAACGTTGAGGTGGAGTTGTAGTTATTTTAGGGTACATTGCAGACATTAATCATCTCTGGTGTCAAGTAGCTCCTGTTTTTCATATACAACAGCGTAGTTACATGATATTTATGCCAGCATTTTGAAG</genome_strand>
        <mrna_strand>ACTACTCTTACGTCTCCTATTTATAAAGTCCCATCTCTATCAACCGCCTCTACAAACACGCCATTTTCCTCTCCTATTTGGCCATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTT.........................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAA...........................................................................................................................TCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAG..................................................................................................................AATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAG......................................................................GTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCAAGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAAGCAATCAGGATATTTCTTGAGGATGGTCATCCGATAGCATGTGCCCAATCATATGCAAAAAATATGGGGCTATATGGTCAGAGAGTTGGTTGCCTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTCTGTGAGGATGAAAAACAAGCAGTGGCAGTGAAAAGTCAGTTGCAGCAACTTGCCAGGCCCATGTACAGTAATCCACCTCTTCATGGTGCTCTTGTTGTTTCTACAATCCTTGGAGATCCAAACTTGAAAACTCTATGGCTCGGGGAAGTGAAG.....................................................................................................GGCATGGCTGATCGTATCATCGGGATGAGAACTGCTTTAAGGGGAAATCTTGAGAAGTTGGGCTCACCTCTATCTTGGGAACACATAACCAACCAG..............................................................................................ATTGGCATGTTCTGCTACAGTGGGATGACACCGGAACAAGTAGACCGATTGACAAAAGAGTATCACATCTACATGACTCGTAATGGTCGTATCAG................................................................................................................TATGGCAGGAGTTACTACTGGAAATGTTGGTTACTTGGCAAACGCTATTCATGAGGTTACTAAATCTGCTTAAGCGTTAACGTCATGGATTCAATAATCAGCTAAATAAAGGCTGTGGAAATTCATTTTTTGTGATCGGAAAGATCACAACATGTTGTAAACTTGTAATAGTTGAGTTAAAACTATCGTACGGAGGGGAGGGGTAATAAATAGAGCCATTTTAAGGTGTAGAAGTCATTAGCAACGTTGAGGTGGAGTTGTAGTTATTTTAGGGTACATTGCAGACATTAATCATCTCTGGTGTCAAGTAGCTCCTGTTTTTCATATACAACAGCGTAGTTACATGATATTTATGCCAGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328634" ref_strand="+" ref_description="SGN-U328634        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>aacaccaggaaagcccaaggctttaagaaaaagtagtgggttggatccacttcagtcacattccgtagcagcttgctggcgtcctttcagaatgatcgttagaatgagtcattctaaggccatttttatatctaaatggaagggattattggtattaatcatagagaaattcatccgaggatgacttaactgagatgactcatcctatcaggcacaaatcaaacatgcactttgagttctaatagactcctctgaatccaagtgaaacctaagagctgtcaatgaagcagattaaacaaatgaagagagatgctagactccagccagaccaagaggaaaaattatgcaattcatatatatgaattgttgcggaaggtgcatcaagttggctgtgttgaaaatgactggaagatttctgcccataatatatcgatgtgaatgaccacatcatgagatttgacttttgtcataccaaaaacagctgtgaaacatttcatttggtatggcaaaatgagtataattgactaacagtattgttctatgtattacaacatgaacagagaaatttgagagtgtatttttgttatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="81131" stop="78516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80831" g_stop="80742" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80741" i_stop="79826" i_length="916">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.039" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79825" g_stop="79680" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="236" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79679" i_stop="79566" i_length="114">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.459" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79565" g_stop="79467" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="335" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79466" i_stop="79071" i_length="396">
            <donor d_prob="0.227" d_score="1.00"/>
            <acceptor a_prob="0.408" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79070" g_stop="78816" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="590" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-U328634" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80831" e_stop="80742"/>
          <exon e_start="79825" e_stop="79680"/>
          <exon e_start="79565" e_stop="79467"/>
          <exon e_start="79070" e_stop="78816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCAGGAAAGCCCAAGGCTTTAAGAAAAAGTAGTGGGTTGGATCCACTTCAGTCACATTCCGTAGCAGCTTGCTGGCGTCCTTTCAGGTCAGTAACTCCTGCAATAGGCAGCTAGGTTACGTGAAACTTATTTTTTGGTTTTCCTGTCCTAATTGAAGGTGAGTGGAAAGTTTACGCTAATATGTCTTTTAAAAGCGTAGTATTACTTGTTGGAATATTAAGGGATAAAAGCAATAAAAAAAACACATTTCTATCTTCTTTGGCTAATTGCATCACTCTAGACTTGATATACCCGGAAAAGGTGTCTCTTGCGCAACTAAGTGCAGTATCCCTTCTCTCTTTCATCTACCTTTTACCTTTTGATATTCTGTGTATGGTTTCACACTTTTGGTCATTCTCTGCTAAGCTTAAGTATAGAAAAGGTTTGGAAAAACACCTATCATTGGTTCTTTATATGCCCCACATTTAGGGTTTTCGGTAATTTTGAAGGTTCGGAAGTAATTTTGGTTCTTTATATCATTGGTTCTTTATATGCCAGCTGTTAAATCAAAGGCCTAAAGCCCAAAACATTAGTTAATTGGCTAATATTTCCATGTATATTTTCTTTGTTCTGTTTCACTTCCATGATCCTTTGCCTCTTAAGGTCCATGATCCTTTACCTCTTACGCTGCCTTTTTCAATATATGGTTCACATTGTATCAAGCTGAATAGGCTTCTGAAGTCCTTAAACTCTTCCTGTCATTGTCTATATGAAATCGTGGATCTTAGGTTCAACTATTTACTGTTTGTGATTCTATTCCTGATATTGCCTTCTGCTCGTCTTTCCTTGAGTTTTCTTTTAATATGCTTGGATTAGATTCTTAGTATAAACTGTCCCTGTTTAGTACACAAGAAAAGATGGCAGGAGGAGACATACGGCCGACTCATCTTTTTATCCTTTCTTTAGTGGTGAGGTGAGGAGTTATCAAGCTGATGCATCATCTCATCTTGTCTTTGGATGCAGAATGATCGTTAGAATGAGTCATTCTAAGGCCATTTTTATATCTAAATGGAAGGGATTATTGGTATTAATCATAGAGAAATTCATCCGAGGATGACTTAACTGAGATGACTCATCCTATCAGGCACAAATCAAACATGCACTTTGAGGTGGCAATTTGTGACCTGGGAACTTTGTGCTCTCTTTTAGGTACTCTCTGTTAAAATGTGTTCCACCATTCCTCGTGAGTTTAATTAATTTGCCTCTTATCATGCTTTTGCCAGTTCTAATAGACTCCTCTGAATCCAAGTGAAACCTAAGAGCTGTCAATGAAGCAGATTAAACAAATGAAGAGAGATGCTAGACTCCAGCCAGACCAAGAGGTGAGCTTCATTGTCGAAAATCTCAAGTTGCTTACAGCACTGGCTCAACCAAACTTCAGACCACAAATAGATCTTTTAGTTACAAAATCATATGATAGTTACTATTTTTCTCTTTTTTTGGAAAAAAAGAAAGAAAGAGGACGAATCATAATCTCCCTTTTTATGTATTAAACTTCTATGATATGGTTTTTATCATTTTCCTGTTAGCCTCGGTGTCATCGCTTTTAGATGCAAAAGTTCGTCCTATTTTAGCACTAAAACTTCCATGATATACTGCTTAGTTGTTTCTCTGGTTTAGCCTTGTCATCATTTACTTTTAGATGAAAAAAAGTTCTCTCTCCCTTAACACCATGACAGTGCTCAATAACTTGTGCTGCATCAACTTATTCTTTATAGGAAAAATTATGCAATTCATATATATGAATTGTTGCGGAAGGTGCATCAAGTTGGCTGTGTTGAAAATGACTGGAAGATTTCTGCCCATAATATATCGATGTGAATGACCACATCATGAGATTTGACTTTTGTCATACCAAAAACAGCTGTGAAACATTTCATTTGGTATGGCAAAATGAGTATAATTGACTAACAGTATTGTTCTATGTATTACAACATGAACAGAGAAATTTGAGAGTGTATTTTTGTTATGGC</genome_strand>
        <mrna_strand>AACACCAGGAAAGCCCAAGGCTTTAAGAAAAAGTAGTGGGTTGGATCCACTTCAGTCACATTCCGTAGCAGCTTGCTGGCGTCCTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATCGTTAGAATGAGTCATTCTAAGGCCATTTTTATATCTAAATGGAAGGGATTATTGGTATTAATCATAGAGAAATTCATCCGAGGATGACTTAACTGAGATGACTCATCCTATCAGGCACAAATCAAACATGCACTTTGAG..................................................................................................................TTCTAATAGACTCCTCTGAATCCAAGTGAAACCTAAGAGCTGTCAATGAAGCAGATTAAACAAATGAAGAGAGATGCTAGACTCCAGCCAGACCAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATTATGCAATTCATATATATGAATTGTTGCGGAAGGTGCATCAAGTTGGCTGTGTTGAAAATGACTGGAAGATTTCTGCCCATAATATATCGATGTGAATGACCACATCATGAGATTTGACTTTTGTCATACCAAAAACAGCTGTGAAACATTTCATTTGGTATGGCAAAATGAGTATAATTGACTAACAGTATTGTTCTATGTATTACAACATGAACAGAGAAATTTGAGAGTGTATTTTTGTTATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339928" ref_strand="+" ref_description="SGN-U339928        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 6e-07, score=22.7)">
      <seq>cattacatgctgttgaaactgtgaaaagttattacaacaataacaacaacatatacctaatggggtccgggcagggtagagtgtatgcaaaccttacccctacctcatggaggtagagaggaggtttccggaagaccctcggatcaagacttattatgcggaagtaaatgcattctttattacagatgcgaaacaattaggtgggccaaaactactttaatgcggttgcgctatgggttactacttgaacagaagtttgcctattgaagcttgaagttgggactgagcaattcaaagatttgggacaagtaagatagcttccaaagcttcttctatcaattgccatgaacttagtatggtgagtttaaatttatattttctttctcgttcacttagttgagctttccttggtaggaaaagaaaggacatttatttctctcagattttgttactatatagtaattctccttgacacctgacattttgtgaattttctcggtaagatagcactttgctatcttgatttgagaaacttatacaccttggagtaagcaagtgtacaagtagaagttacaatttttttccatatcaggaaaggaattagcagctaaatacagttaaaagggtcaggtgtaatttccgccttcttttgtattgcaatttgcatgtcctttccaagccaatgactgagtttagtagtattatatcaaagcttttacatccacttactctctaagttgattcttacatgcaactttgtccttaaatttgcaagaatgacagtatttgagattgaaaagattcaataacaccaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="82423" stop="80521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82124" g_stop="81912" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81911" i_stop="81511" i_length="401">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81510" g_stop="81446" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="278" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81445" i_stop="81361" i_length="85">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81360" g_stop="80821" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="818" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-U339928" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82124" e_stop="81912"/>
          <exon e_start="81510" e_stop="81446"/>
          <exon e_start="81360" e_stop="80821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGACATGCTGTTGAAACTGTGAAAAGTTATTACAACAATAACAACAACATATACCTAATGGGGTCCGGGCAGGGTAGAGTGTATGCAAACCTTACCCCTACCTCATGGAGGTAGAGAGGAGGTTTCCGGAAGACCCTCGGATCAAGACTTATTATGCGGAAGTAAATGCATTCTTTATTACAGATGCGAAACAATTAGGTGGGCCAAAACTGTAAGTCATTTATACTTCCAGATAATCTCTGACCACTTTTTCTTTTGTAATGTTTAGTATTGAATTTCAAAGGTAGATAGTAGAGTACAATCAGTTCAATTTAGGACTGCTCTTTTCTGCAGCATGTCATTCTGGGCTTTGAATCTGAAATCATTAAGCTGTCGTTTTTGGCTGAAGAAAAATCAAAGGAGAGGATTGTACTGCTCTTTTTCCCCGAGTAGTTAGAAATAAAGTGTTCTTACTTATTTGAGCCAGATTTATCTTTTCTGCTCTTTGAAGTTGTTTAAGATGTGTTGACTATAGCCAGTTCCTTTTTCAGGATCTTTTAAATGACCACAATTATTGGTTGCTATCAAATTTATTGATAATTGATGTTGTGGTATGCATATGATTACTTGCAGACTTTAATGCGGTTGCGCTATGGGTTACTACTTGAACAGAAGTTTGCCTATTGAAGCTTGAAGTTGTAAGTTCCCTACATCTTCATTTTCCGAATTGATCTTCATACCGGTTTCAGTTATGAATTTTTTCCTTGTCTGTCTCTATGACAGGGGACTGAGCAATTCAAAGATTTGGGACAAGTAAGATAGCTTCCAAAGCTTCTTCTATCAATTGCCATGAACTTAGTATGGTGAGTTTAAATTTATATTTTCTTTCTCGTTCACTTAGTTGAGCTTTCCTTGGTAGGAAAAGAAAGGACATTTATTTCTCTCAGATTTTGTTACTATATAGTAATTCTCCTTGACACCTGACATTTTGTGAATTTTCTCGGTAAGATAGCACTTTGCTATCTTGATTTGAGAAACTTATACACCTTGGAGTAAGCAAGTGTACAAGTAGAAGTTACAATTTTTTTCCATATCAGGAAAGGAATTAGCAGCTAAATACAGTTAAAAGGGTCAGGTGTAATTTCCGCCTTCTTTTGTATTGCAATTTGCATGTCCTTTCCAAGCCAATGACTGAGTTTAGTAGTATTATATCAAAGCTTTTACATCCACTTACTCTCTAAGTTGATTCTTACATGCAACTTTGTCCTTAAATTTGCAAGAATGACAGTATTTGAGATTGAAAAGATTCAATAACACCAGGAA</genome_strand>
        <mrna_strand>CATTACATGCTGTTGAAACTGTGAAAAGTTATTACAACAATAACAACAACATATACCTAATGGGGTCCGGGCAGGGTAGAGTGTATGCAAACCTTACCCCTACCTCATGGAGGTAGAGAGGAGGTTTCCGGAAGACCCTCGGATCAAGACTTATTATGCGGAAGTAAATGCATTCTTTATTACAGATGCGAAACAATTAGGTGGGCCAAAACT.................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTAATGCGGTTGCGCTATGGGTTACTACTTGAACAGAAGTTTGCCTATTGAAGCTTGAAGTT.....................................................................................GGGACTGAGCAATTCAAAGATTTGGGACAAGTAAGATAGCTTCCAAAGCTTCTTCTATCAATTGCCATGAACTTAGTATGGTGAGTTTAAATTTATATTTTCTTTCTCGTTCACTTAGTTGAGCTTTCCTTGGTAGGAAAAGAAAGGACATTTATTTCTCTCAGATTTTGTTACTATATAGTAATTCTCCTTGACACCTGACATTTTGTGAATTTTCTCGGTAAGATAGCACTTTGCTATCTTGATTTGAGAAACTTATACACCTTGGAGTAAGCAAGTGTACAAGTAGAAGTTACAATTTTTTTCCATATCAGGAAAGGAATTAGCAGCTAAATACAGTTAAAAGGGTCAGGTGTAATTTCCGCCTTCTTTTGTATTGCAATTTGCATGTCCTTTCCAAGCCAATGACTGAGTTTAGTAGTATTATATCAAAGCTTTTACATCCACTTACTCTCTAAGTTGATTCTTACATGCAACTTTGTCCTTAAATTTGCAAGAATGACAGTATTTGAGATTGAAAAGATTCAATAACACCAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312892" ref_strand="+" ref_description="SGN-U312892        Tomato 200607 #1 [21 ESTs aligned] arabidopsis/peptide: | Symbol: None | 60S ribosomal protein L11 (RPL11D) | chr5:18582292-18583785 REVERSE | Aliases: None(evalue: 2e-89, score=325) genbank/nr: gi|78191444|gb|ABB29943.1| ribosomal protein L11-like protein [Solanum tuberosum] (evalue: 2e-90, score=335)">
      <seq>ctcagtattcttcaactcacttgctgctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagcaaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagttgagaaccagcttagcaagtttatgcattttgtagactgatgtctatatcactcctagagggaagttttggggaatttctattagttggtgtatgagggaggatgtgttagttcccattttgtctatcagatgaactcaaatctttttttttttgtgttgcaatcatagtagaaccattaatctagcatcacaagagatgttacgaatacctaattggtttcaattgtggtgatgaatggtgttgttttcaacattttttttcaaattgtatttgggtgttggatgttccatattgggcatgaagtgcaattatgcaaccccnnaccatataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="+" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="85903" stop="88842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86203" g_stop="86255" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86352" g_stop="86459" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="161" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86553" g_stop="86595" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="204" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87474" g_stop="87669" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="400" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88020" g_stop="88543" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="923" r_length="523" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="933" polyA_stop="963"/>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="+" ref_id="SGN-U312892" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>924</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86203" e_stop="86255"/>
          <exon e_start="86352" e_stop="86459"/>
          <exon e_start="86553" e_stop="86595"/>
          <exon e_start="87474" e_stop="87669"/>
          <exon e_start="88020" e_stop="88543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTATTCTTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATGGTATTGCTCTGCAATTCCCGTTCCGTCAGTATTTCTTATTTTCTTACTGTATACGCCAATGGCGTCTAATTTCTTGTTGTGTTATAATGAGAGCAGGCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTAAAACTTTTTTTTTTTAAATACAAAATGTCATGAATTTGTTATTTTCCTTTGTTTTGATGTTGAACTAAGTTTCGTTTTTTGATACTTAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAGGTAAATTTTTGAATCTTCTATGCATTTTAATATCAGATACTCAGTTTGAACGCCCCTCGACTAATTCCCCGATATCTCCCACCATCAACATGCACCACGTAACTATGTTCTCTCCTCCAAGGCTAGAACAAATAGGAAGAAATCACATTTGAACCGGAGACCTAATATAGGAGTTAGGACATTGTCTAATCTGGAAATATCATTAGATATGCGCACTAATCATTTATCAATGCCTATGCATAAGCTGTGTGTTTGTGGACTTGTGGTTATTGGTTAACAATATTGCTCGTCTGGCTGACTTTTAAAATAGCTTAATTTTTGTCAGTTGCATGTTCAGTTCAGCACTGAAAAATGCTGGGTCAATACAGAAGGATTGTATAGCTGGCTCGATTTAGTTTTGGGATTAAGGTGTCATTTATTGATTGACTTATTAAAACAGTTCAAAAGTGAGTTTACAGGGAGTAACTCTCATTCTTGTTAAAAGTGACTTCTTTTTGATGAACGAAAACCTCAAGCAATAAGCAGTGTTTATTGCAGGTTCTTGTGATTGTACTGGATTTGTTCCCTTTAGTAGTAGTTTTTCCTAGCCAATGTAGATGTACAAGTATTTTTGCAAGATATTTATTCAAGCTAGTGTTACTAACTTGTCCAGATTGTCAAAACTTAATAACCATGTTATCCACGACTTATGGTTACCTAACTTGCTTCCTGTTTCTGTTCATACATTGATGCGTATAATTGGCTGGTGAATTAACAACCCAGTGATTTGCTCGATTACTTTGCTTGTGGACATTTATTCAACTAGCTTTGTCTTTATCTCAGTTTTGTCCGTGGACATTAATTAGTTTCTTACATCCTTGTGTGGTTCTCATCAACAGCAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATTGTCATCTAGTACTTTCTGTGCTTAGGTTTCACGATCTACATAATTAGCTAGCTAGCTTTATTTTACTTAGGTGGTGGTTTGTTATTGGTCTATCTTTTTGAATGCATAACAAGAAAACTATGTTTGAGTTTCGTTGAAACTGCATAAAACTTAGTATGCATAGTTTAAGGAAATGATTTTACAAATATTTCTCTTTTATAAATGTTCTATTGCTTCTTATGTTTGCTGCATCTTACCATATCAACCGCGATAGGTTATGAATCCGGTACACATATATAAACTGTTATCTTCTTCGTTCTGAAGTTGAGTCATTTTGTTTTTTTCTTCTCTGTTTTACAGGTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTTGTGTTGCAATCATAGTAGAACCATTAATCTAGCATCACAAGAGATGTTACGAATACCTAATTGGTTTCAATTGTGGTGATGAATGGTGTTGTTTTCAACATTTTTTTTCAAATTGTATTTGGGTGTTGGATGTTCCATCTTTGGCATGAAGTGCAATTATGCAACCCA</genome_strand>
        <mrna_strand>CTCAGTATTCTTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATG................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAG.............................................................................................GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA..............................................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATC-TTTTTTTTTTTGTGTTGCAATCATAGTAGAACCATTAATCTAGCATCACAAGAGATGTTACGAATACCTAATTGGTTTCAATTGTGGTGATGAATGGTGTTGTTTTCAACATTTTTTTTCAAATTGTATTTGGGTGTTGGATGTTCCATATTGGGCATGAAGTGCAATTATGCAACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333125" ref_strand="-" ref_description="SGN-U333125        Tomato 200607 #1 [2 ESTs aligned] genbank/nr: cell(evalue: 2e-15, score=85.9)">
      <seq>cggccgattgctttccacttttctccttcaaaaaatcgaaccagatcgatcgagcgatgtggaataatcgacgtccgccggaaaatggctccggtaatgaggaagacaactccgatcaggagaaaactatagcaaaggcagctggtttcgtggtcgtttcgggaatcgcgatgagcattctcaaagcactcaatccattcaaccatcaaaacatcaacagtaaaaccagtgaagtaaaggcaatagttttcgagtcagctccatctcaaactcagcctcaagtgcttcaacaatgccaaccagagcctgagctcatagtcaagaaaccaaattgttgcgtggagaaaagagagaagaaggaagtttcaccaaatgtgatagagattgagcggggagacactctttggggactctctagaaaatatggggtgtcaatcgaggaaattaaggacgctaacgggcttgaaggggacaccatctatgctgggaagaaacttgtaataccctaacgtgctcaatcttgttgattcttgttgttgtattgttggttatcctgtgaggtttgtattgtttttttcgttgaactattgggtatgttgtattaggggagagattttgtagtttgaaacgaacggtatggctggtacgagagatagggatgtgagattggtttgagctaatgtaaaatggaaaattttagctgctatgatgaacttgtatctcgtctcgcaatattctatcatgtagaagaaatgatgattctccaaattctctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="94584" stop="35457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94294" g_stop="93971" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93970" i_stop="93866" i_length="105">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93865" g_stop="93761" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="428" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93760" i_stop="93347" i_length="414">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93346" g_stop="92997" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="778" r_length="350" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92996" i_stop="92887" i_length="110">
            <donor d_prob="0.864" d_score="0.94"/>
            <acceptor a_prob="0.941" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92886" g_stop="92859" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="806" r_length="28" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-U333125" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333125" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94294" e_stop="93971"/>
          <exon e_start="93865" e_stop="93761"/>
          <exon e_start="93346" e_stop="92997"/>
          <exon e_start="92886" e_stop="92859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAAACCCCTTTCCACTTTTCTTCTTCCAAAAAATCGAACCAGATCGATCGAGCGATGTGGAATAATCGACGTCCGCCGGAAAATGGCTCCGGTAATGAGGAAGACAACTCCGATCAGGAGAAAACTATAGCAAAGGCAGCTGGTTTCGTGGTCGTTTCGGGAATCGCGATGAGCATTCTCAAAGCACTCAATCCATTCAACCATCAAAACATCAACAGTAAAACCAGTGAAGTAAAGGCAATAGTTTTCGAGTCAGCTCCATCTCAAACTCAGCCTCAAGTGCTTCAACAATGCCAACCAGAGCCTGAGCTCATAGTCAAGGTTGTGACTAACTTGCTTGTAATTGCATTTTGTACATTTACAAAAATTTGTGTTCAATCGTTTTAAGTTTTTCGCATTAATGTATTTGCTTTGTTTTCTCTTTAGAAACCAAATTGTTGCGTGGAGAAAAGAGAGAAGAAGGAAGTTTCACCAAATGTGATAGAGATTGAGCGGGGAGACACTCTTTGGGGACTCTCTAGAAAATATGGGGTATGCATTCGCATTGCTATTAATTTGACTTGATACTGAGTTTAAGAAATAAGAACTTTTTTAAAAAATCTTTCTTTTATACTGACTAAAAAGTAAAAGGGACTGTATAAATTGAGACAGATTGAGTATAAAATTATGAATGATACCATTGATATTTGGTAAGTTTAAAAATAATACTTTTCAAATTATTTGATTAGTAAAAATGAGACGTTTATATCAGGAAATCAATGTCCAATTCCTTAGATGTTTTGATCTTTACACTGGAAACTCAATATTCTTTTCTGGACAAATGATGTATCTTGTTGAATATTTGGTTTATCAGTACCCATGAAAAAAATATATCAGGAGGAAGTTTCTTCTTTTACACATTTATTGGCCTGGTGATAATTTGAATGTATGATTGGATTTCATTAGGTGTCAATCGAGGAAATTAAGGACGCTAACGGGCTTGAAGGGGACACCATCTATGCTGGGAAGAAACTTGTAATACCCTAACGTGCTCAATCTTGTTGATTCTTGTTGTTGTATTGTTGGTTATCCTGTGAGGTTTGTATTGTTTTTTTCGTTGAACTATTGGGTATGTTGTATTAGGGGAGAGATTTTGTAGTTTGAAACGAACGGTATGGCTGGTACGAGAGATAGGGATGTGAGATTGGTTTGAGCTAATGTAAAATGGAAAATTTTAGCTGCTATGATGAACTTGTATCTCGTCTCGCAATATTCTATCATGTAGAAGAAATGATGATTCTCCAAATTCTCTATCGGTTAGTTGTCCTTTATCATGAGTATGATTCTAATTCTCTTTGTTTAATTGCGTCTTCCATGGAGTTATATTAGGTAGCAAATCAATCTTCCAATTTCATTTCTGTTGCAGAAGTAAGGGAAATGTTGAAAGCAACAAG</genome_strand>
        <mrna_strand>CGGCCGATTGCTTTCCACTTTTCTCCTT-CAAAAAATCGAACCAGATCGATCGAGCGATGTGGAATAATCGACGTCCGCCGGAAAATGGCTCCGGTAATGAGGAAGACAACTCCGATCAGGAGAAAACTATAGCAAAGGCAGCTGGTTTCGTGGTCGTTTCGGGAATCGCGATGAGCATTCTCAAAGCACTCAATCCATTCAACCATCAAAACATCAACAGTAAAACCAGTGAAGTAAAGGCAATAGTTTTCGAGTCAGCTCCATCTCAAACTCAGCCTCAAGTGCTTCAACAATGCCAACCAGAGCCTGAGCTCATAGTCAAG.........................................................................................................AAACCAAATTGTTGCGTGGAGAAAAGAGAGAAGAAGGAAGTTTCACCAAATGTGATAGAGATTGAGCGGGGAGACACTCTTTGGGGACTCTCTAGAAAATATGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAATCGAGGAAATTAAGGACGCTAACGGGCTTGAAGGGGACACCATCTATGCTGGGAAGAAACTTGTAATACCCTAACGTGCTCAATCTTGTTGATTCTTGTTGTTGTATTGTTGGTTATCCTGTGAGGTTTGTATTGTTTTTTTCGTTGAACTATTGGGTATGTTGTATTAGGGGAGAGATTTTGTAGTTTGAAACGAACGGTATGGCTGGTACGAGAGATAGGGATGTGAGATTGGTTTGAGCTAATGTAAAATGGAAAATTTTAGCTGCTATGATGAACTTGTATCTCGTCTCGCAATATTCTATCATGTAGAAGAAATGATGATTCTCCAAATTCTCTAAAA..............................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333424" ref_strand="+" ref_description="SGN-U333424        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | glycosyl transferase family 20 protein / trehalose-phosphatase family protein, contains Pfam profile: PF02358 trehalose-phosphatase | chr1:1955412-1958755 FORWARD | Aliases: T2D23.11, T2D23_11(evalue: 1e-37, score=152) genbank/nr: gi|19568935|gb|AAL91978.1| putative trehalose synthase [Solanum tuberosum](evalue: 6e-53, score=209)">
      <seq>gaaaagcggtcagcacattgtggaagtaaagcctcagggggtcaccaaaggtttagttgcagaaaaagtctttacatctttagcggagaaaggaaaactggcggattttgtgctttgcattggtgatgatagatcagatgaagatatgtttgaaatcattggcgatgctttgtccagaaatattatttcatatgatgccaaggtatttgcttgcacagttggacaaaaacctagcaaagcaaagtattacttggatgacacatctgaggtggtgcttatgctagactcccttgctgatgccactgatactccagtgacttctgatgacgatgaacctgcggactccgactgaatgtagctaccagatgttttgtttgcttcggttaccttctctattgaatgtatattccaggtctgaagatggcacattgtccatttgagttcggtttcgaggtttaagacggtggaatctcaaattctgttcaatcattctttcctttctgattgttctattcttttatcattagcctgtatgtaatatatctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0075L20-gNNTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0075L20.1" temp_strand="-" temp_description="C07SLm0075L20.1  AC212652.1 htgs_phase:1 submitted_to_sgn_as:gi|158262145|gb|AC212652.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces">
        <position start="100015" stop="98901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99711" g_stop="99201" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="548" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0075L20.1" gen_strand="-" ref_id="SGN-U333424" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0075L20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99711" e_stop="99201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTCACCAAAGGTTTAGTTGCAGAAAAAGTCTTTACATCTTTAGCGGAGAAAGGAAAACTGGCGGATTTTGTGCTTTGCATTGGTGATGATAGATCAGATGAAGATATGTTTGAAATCATTGGCGATGCTTTGTCCAGAAATATTATTTCATATGATGCCAAGGTATTTGCTTGCACAGTTGGACAAAAACCTAGCAAAGCAAAGTATTACTTGGATGACACATCTGAGGTGGTGCTTATGCTAGACTCCCTTGCTGATGCCACTGATACTCCAGTGACTTCTGATGACGATGAACCTGCGGACTCCGACTGAATGTAGCTACCAGATGTTTTGTTTGCTTCGGTTACCTTCTCTATTGAATGTATATTCCAGGTCTGAAGATGGCACATTGTCCATTTGAGTTCGGTTTCGAGGTTTAAGACGGTGGAATCTCAAATTCTGTTCAATCATTCTTTCCTTTCTGATTGTTCTATTCTTTTATCATTAGCCTGTATGTAATATATCTCTG</genome_strand>
        <mrna_strand>GGGGTCACCAAAGGTTTAGTTGCAGAAAAAGTCTTTACATCTTTAGCGGAGAAAGGAAAACTGGCGGATTTTGTGCTTTGCATTGGTGATGATAGATCAGATGAAGATATGTTTGAAATCATTGGCGATGCTTTGTCCAGAAATATTATTTCATATGATGCCAAGGTATTTGCTTGCACAGTTGGACAAAAACCTAGCAAAGCAAAGTATTACTTGGATGACACATCTGAGGTGGTGCTTATGCTAGACTCCCTTGCTGATGCCACTGATACTCCAGTGACTTCTGATGACGATGAACCTGCGGACTCCGACTGAATGTAGCTACCAGATGTTTTGTTTGCTTCGGTTACCTTCTCTATTGAATGTATATTCCAGGTCTGAAGATGGCACATTGTCCATTTGAGTTCGGTTTCGAGGTTTAAGACGGTGGAATCTCAAATTCTGTTCAATCATTCTTTCCTTTCTGATTGTTCTATTCTTTTATCATTAGCCTGTATGTAATATATCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="13295" PGL_stop="19051"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13295" e_stop="13556"/>
            <exon e_start="14542" e_stop="14670"/>
            <exon e_start="14744" e_stop="14873"/>
            <exon e_start="15400" e_stop="15520"/>
            <exon e_start="16313" e_stop="16394"/>
            <exon e_start="17568" e_stop="17621"/>
            <exon e_start="18000" e_stop="18038"/>
            <exon e_start="18500" e_stop="18599"/>
            <exon e_start="18674" e_stop="19051"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.476" e_score="0.935"/>
          <exon-intron don_prob="0.991" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.989" e_score="0.990"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="13295" e_stop="13556" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.476">
            <gDNA_intron_boundary i_start="13557" i_stop="14541" i_length="985"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14542" e_stop="14670" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.963">
            <gDNA_intron_boundary i_start="14671" i_stop="14743" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14744" e_stop="14873" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.919">
            <gDNA_intron_boundary i_start="14874" i_stop="15399" i_length="526"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15400" e_stop="15520" e_length="121"/>
          </exon>
          <intron i_serial="4" don_prob="0.954" acc_prob="0.934">
            <gDNA_intron_boundary i_start="15521" i_stop="16312" i_length="792"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16313" e_stop="16394" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="0.957" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16395" i_stop="17567" i_length="1173"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17568" e_stop="17621" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.882">
            <gDNA_intron_boundary i_start="17622" i_stop="17999" i_length="378"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18000" e_stop="18038" e_length="39"/>
          </exon>
          <intron i_serial="7" don_prob="0.977" acc_prob="0.973">
            <gDNA_intron_boundary i_start="18039" i_stop="18499" i_length="461"/>
          </intron>
          <exon e_serial="8" e_score="0.990">
            <gDNA_exon_boundary e_start="18500" e_stop="18599" e_length="100"/>
          </exon>
          <intron i_serial="8" don_prob="0.968" acc_prob="0.989">
            <gDNA_intron_boundary i_start="18600" i_stop="18673" i_length="74"/>
          </intron>
          <exon e_serial="9" e_score="0.989">
            <gDNA_exon_boundary e_start="18674" e_stop="19051" e_length="378"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13295" stop="13556"/>
              <exon start="14542" stop="14670"/>
              <exon start="14744" stop="14873"/>
              <exon start="15400" stop="15520"/>
              <exon start="16313" stop="16394"/>
              <exon start="17568" stop="17621"/>
              <exon start="18000" stop="18038"/>
              <exon start="18500" stop="18599"/>
              <exon start="18674" stop="19051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321457" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATCATTATTGGTCAGTCTTGATTTTCTGTAAAAAAATGGCTCAATGGTTGTCACCTGTTGTACAGATTCACTAAAATTACGGACCACAGTTCAGTGTTTCTATACAAGAAGTAAAGTTCCAATTTTGGGTAATAATTTTAGCTCAATGGGTGTTTTTGGAAAGAAGAGAGGAGGATTAGGGAGGATTAAAGTTGCTTATCAAGATTCTGCTGCTGCATCTGAGGAAATTGCTGATGATTTTTATGCTGTTTTGGGTTTG : CTTCCTGATGCTACACCTGCTCAAATAAAGAAGGCATACTATAGTTGCATGAAAGCTTGCCATCCAGATTTGAGTGGTGATGATCCCGAGACCACAAATTTTTGCATGTTTATCAATGAGGTCTATGAG : ATTCTTAGTGATCCAGTGCAAAGGAGAGTTTATGATGAGATCCATGGGTACACAGCCACAGCAATTAACCCTTTCCTGAGCGATTCATCGCCGAAAGATCATGTATTTGTTGACGAGTTTAGCTGCATAG : GCTGCAAAAATTGTGCCAATGTTTGCTCAAAAGTGTTTGGGATTGAGGAAGACTTTGGAAGAGCTAGAGTTTACGATCAATGTGGACACCCTGATTTAATTCAACAAGCTATAGATAGCTG : CCCAGTGGATTGCATACATTGGACTTCTGCTGCACAGCTGTCTTTGCTTGAGGATGAAATGCGAAGAATAGAAAGAGTAAAC : GTTGCCTTGATGCTATCAGGAATGGGCAGTGGAGCCATGGATGTATTCAGAATG : GCGAGCACGCGGTGGGAAAAACGACAATCTAAAGTTCTG : GAACAAGCTAAAGTCAGAATGATGAAGAAGAAAAATTCTGAGAAAACTGAATCATACTGGGATAACCTATGGGGCGATCGTAAAGACTACACAAAGACAG : AGGAGGAAGTGGAAGATAGATCAAAACGAGCTGCAGCAGCTGCTCGCAAATGGAGAGAGTACTCAAGGAGAGGTGCTGACAAACCTCCTACCTTTAAACTTCCCGAGGCCATCTCTAATGACAATTGACATATACTTCCTAACCGACTTTGCAGTGCACGGTACATGCATCTCACCTTTGTAAAATATGGTACATTTAGATATAGTATATTCATGATAGTCATGGTTCCTCCCCATATCGATGTAATTATATAGCTAAAATTGACCTCGGGTACATCTATCTGTATGTAAGATCATTCATAATTCAATAAAAGTTGTATGGAGAAAACAATTATTCAACCTGTGTATTCGTCGTTTGATATTCATGATTGATGGTTCT</gDNA_template>
            <first_frame> L  I  I  I  G  Q  S  *  F  S  V  K  K  W  L  N  G  C  H  L  L  Y  R  F  T  K  I  T  D  H  S  S  V  F  L  Y  K  K  *  S  S  N  F  G  *  *  F  *  L  N  G  C  F  W  K  E  E  R  R  I  R  E  D  *  S  C  L  S  R  F  C  C  C  I  *  G  N  C  *  *  F  L  C  C  F  G  F   : A  S  *  C  Y  T  C  S  N  K  E  G  I  L  *  L  H  E  S  L  P  S  R  F  E  W  *  *  S  R  D  H  K  F  L  H  V  Y  Q  *  G  L  *   : D  S  *  *  S  S  A  K  E  S  L  *  *  D  P  W  V  H  S  H  S  N  *  P  F  P  E  R  F  I  A  E  R  S  C  I  C  *  R  V  *  L  H  R :   L  Q  K  L  C  Q  C  L  L  K  S  V  W  D  *  G  R  L  W  K  S  *  S  L  R  S  M  W  T  P  *  F  N  S  T  S  Y  R  *  L  :  P  S  G  L  H  T  L  D  F  C  C  T  A  V  F  A  *  G  *  N  A  K  N  R  K  S  K   : R  C  L  D  A  I  R  N  G  Q  W  S  H  G  C  I  Q  N   : G  E  H  A  V  G  K  T  T  I  *  S  S   : G  T  S  *  S  Q  N  D  E  E  E  K  F  *  E  N  *  I  I  L  G  *  P  M  G  R  S  *  R  L  H  K  D  R :   G  G  S  G  R  *  I  K  T  S  C  S  S  C  S  Q  M  E  R  V  L  K  E  R  C  *  Q  T  S  Y  L  *  T  S  R  G  H  L  *  *  Q  L  T  Y  T  S  *  P  T  L  Q  C  T  V  H  A  S  H  L  C  K  I  W  Y  I  *  I  *  Y  I  H  D  S  H  G  S  S  P  Y  R  C  N  Y  I  A  K  I  D  L  G  Y  I  Y  L  Y  V  R  S  F  I  I  Q  *  K  L  Y  G  E  N  N  Y  S  T  C  V  F  V  V  *  Y  S  *  L  M  V   </first_frame>
            <second_frame>  *  S  L  L  V  S  L  D  F  L  *  K  N  G  S  M  V  V  T  C  C  T  D  S  L  K  L  R  T  T  V  Q  C  F  Y  T  R  S  K  V  P  I  L  G  N  N  F  S  S  M  G  V  F  G  K  K  R  G  G  L  G  R  I  K  V  A  Y  Q  D  S  A  A  A  S  E  E  I  A  D  D  F  Y  A  V  L  G  L  :  L  P  D  A  T  P  A  Q  I  K  K  A  Y  Y  S  C  M  K  A  C  H  P  D  L  S  G  D  D  P  E  T  T  N  F  C  M  F  I  N  E  V  Y  E  :  I  L  S  D  P  V  Q  R  R  V  Y  D  E  I  H  G  Y  T  A  T  A  I  N  P  F  L  S  D  S  S  P  K  D  H  V  F  V  D  E  F  S  C  I   : G  C  K  N  C  A  N  V  C  S  K  V  F  G  I  E  E  D  F  G  R  A  R  V  Y  D  Q  C  G  H  P  D  L  I  Q  Q  A  I  D  S  C :   P  V  D  C  I  H  W  T  S  A  A  Q  L  S  L  L  E  D  E  M  R  R  I  E  R  V  N  :  V  A  L  M  L  S  G  M  G  S  G  A  M  D  V  F  R  M  :  A  S  T  R  W  E  K  R  Q  S  K  V  L  :  E  Q  A  K  V  R  M  M  K  K  K  N  S  E  K  T  E  S  Y  W  D  N  L  W  G  D  R  K  D  Y  T  K  T   : E  E  E  V  E  D  R  S  K  R  A  A  A  A  A  R  K  W  R  E  Y  S  R  R  G  A  D  K  P  P  T  F  K  L  P  E  A  I  S  N  D  N  *  H  I  L  P  N  R  L  C  S  A  R  Y  M  H  L  T  F  V  K  Y  G  T  F  R  Y  S  I  F  M  I  V  M  V  P  P  H  I  D  V  I  I  *  L  K  L  T  S  G  T  S  I  C  M  *  D  H  S  *  F  N  K  S  C  M  E  K  T  I  I  Q  P  V  Y  S  S  F  D  I  H  D  *  W  F  </second_frame>
            <third_frame>   D  H  Y  W  S  V  L  I  F  C  K  K  M  A  Q  W  L  S  P  V  V  Q  I  H  *  N  Y  G  P  Q  F  S  V  S  I  Q  E  V  K  F  Q  F  W  V  I  I  L  A  Q  W  V  F  L  E  R  R  E  E  D  *  G  G  L  K  L  L  I  K  I  L  L  L  H  L  R  K  L  L  M  I  F  M  L  F  W  V  C :   F  L  M  L  H  L  L  K  *  R  R  H  T  I  V  A  *  K  L  A  I  Q  I  *  V  V  M  I  P  R  P  Q  I  F  A  C  L  S  M  R  S  M  R :   F  L  V  I  Q  C  K  G  E  F  M  M  R  S  M  G  T  Q  P  Q  Q  L  T  L  S  *  A  I  H  R  R  K  I  M  Y  L  L  T  S  L  A  A  *  :  A  A  K  I  V  P  M  F  A  Q  K  C  L  G  L  R  K  T  L  E  E  L  E  F  T  I  N  V  D  T  L  I  *  F  N  K  L  *  I  A   : A  Q  W  I  A  Y  I  G  L  L  L  H  S  C  L  C  L  R  M  K  C  E  E  *  K  E  *  T :   L  P  *  C  Y  Q  E  W  A  V  E  P  W  M  Y  S  E  W :   R  A  R  G  G  K  N  D  N  L  K  F  W :   N  K  L  K  S  E  *  *  R  R  K  I  L  R  K  L  N  H  T  G  I  T  Y  G  A  I  V  K  T  T  Q  R  Q  :  R  R  K  W  K  I  D  Q  N  E  L  Q  Q  L  L  A  N  G  E  S  T  Q  G  E  V  L  T  N  L  L  P  L  N  F  P  R  P  S  L  M  T  I  D  I  Y  F  L  T  D  F  A  V  H  G  T  C  I  S  P  L  *  N  M  V  H  L  D  I  V  Y  S  *  *  S  W  F  L  P  I  S  M  *  L  Y  S  *  N  *  P  R  V  H  L  S  V  C  K  I  I  H  N  S  I  K  V  V  W  R  K  Q  L  F  N  L  C  I  R  R  L  I  F  M  I  D  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13329" stop="13556"/>
                    <exon start="14542" stop="14670"/>
                    <exon start="14744" stop="14873"/>
                    <exon start="15400" stop="15520"/>
                    <exon start="16313" stop="16394"/>
                    <exon start="17568" stop="17621"/>
                    <exon start="18000" stop="18038"/>
                    <exon start="18500" stop="18599"/>
                    <exon start="18674" stop="18801"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNGSMVVTCCTDSLKLRTTVQCFYTRSKVPILGNNFSSMGVFGKKRGGLGRIKVAYQDSAAASEEIADDFYAVLGLLPDATPAQIKKAYYSCMKACHPDLSGDDPETTNFCMFINEVYEILSDPVQRRVYDEIHGYTATAINPFLSDSSPKDHVFVDEFSCIGCKNCANVCSKVFGIEEDFGRARVYDQCGHPDLIQQAIDSCPVDCIHWTSAAQLSLLEDEMRRIERVNVALMLSGMGSGAMDVFRMASTRWEKRQSKVLEQAKVRMMKKKNSEKTESYWDNLWGDRKDYTKTEEEVEDRSKRAAAAARKWREYSRRGADKPPTFKLPEAISNDN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="29929" PGL_stop="35311"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29929" e_stop="30249"/>
            <exon e_start="34424" e_stop="35311"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29929" e_stop="30249" e_length="321"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="30250" i_stop="34423" i_length="4174"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="34424" e_stop="35311" e_length="888"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29929" stop="30249"/>
              <exon start="34424" stop="35311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319627" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTTTTTTCTTCTTCAAAATTGAATCTTTTCAGTGAACTTTTACTATTTGGTCAATCAAGAAGTGAAATTACAGAGCAAAAGCAGATATAGTTTTGAAGATGGCAGGTTACAGAGGTGATGATGAGTATGATTACCTTTTCAAGCTTGTGTTGATAGGTGATTCAGGTGTGGGTAAATCTAATCTGCTTTCCAGGTTCACCAAAAATGAATTCAATTTGGAGTCTAAATCAACTATTGGGGTTGAATTTGCAACCAAAAGTCTTAATATTGATGGTAAAGTTATTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAG : GTATCGTGCCATTACGAGTGCTTATTATCGGGGAGCTGTCGGTGCTTTGCTCGTATATGATGTTACTCGACATGTTACCTTTGAAAACGTCAACAGGTGGTTGAAGGAATTGAGAGACCATACTGACCCTAACATTGTAGTCATGCTCCTAGGCAACAAATCAGATCTCCGACATCTCGTGGCTGTTTCAACTGAAGAGGCTAAATCTTTGGCAGAGAGGGAAGCCCTATACTTCATGGAAACTTCTGCATTAGAAGCGACCAACGTTGAAAATGCGTTTACTGAAGCTCTCACGCAGATATACCGGATCGTCAGTAAGAAAGCAGTCGAGGCAGGGGACGAAGGTGCTACTTCAACCGCACCACCTAAAGGACAGACGATTAATATCAAAGATGAAGGATCTGCTTGGAAAAAGTTTGGGTGCTGTTCGAGCTAGGGCTCACGTAAGACAATAGCTCAAGCTTTATATATCAGTTGTAAATTGTCATTAAATCAATGATTTCCTCTCCCTGTTTTCTCTCACTTTGGGTATCGCGATTGTGGGATATAAGATTTATTCTATAGTCATGAGAATACGTGAAGCAGCGCGTTCTCATGAAAAATTCCGAAGGAGGATCAGGTACTGCTAGTTTCTAATTACAGAATGTCTAAACAAGGTCTTAGTTTTATGTTTTCTGGTTGATGGCTTGAAAAACTGGAGATATCTTTGCAATAACCTGTTACCGAATATCTTCTTATTTGTCTCGAATTTACGTCTTAATTATTTTTCCCCTTCTAAAAGTGTATTTCCTGAGCTGAGTAGCAATGTTTGTTGTTCATGATATGTGTAGTTTGATAAATTAAAGTAGAACATGGCAAGGTGTGCCCAGAGTTGATTTAAGTGGATGA</gDNA_template>
            <first_frame> Y  F  F  L  L  Q  N  *  I  F  S  V  N  F  Y  Y  L  V  N  Q  E  V  K  L  Q  S  K  S  R  Y  S  F  E  D  G  R  L  Q  R  *  *  *  V  *  L  P  F  Q  A  C  V  D  R  *  F  R  C  G  *  I  *  S  A  F  Q  V  H  Q  K  *  I  Q  F  G  V  *  I  N  Y  W  G  *  I  C  N  Q  K  S  *  Y  *  W  *  S  Y  *  S  S  D  L  G  Y  C  W  S  R  K  :  V  S  C  H  Y  E  C  L  L  S  G  S  C  R  C  F  A  R  I  *  C  Y  S  T  C  Y  L  *  K  R  Q  Q  V  V  E  G  I  E  R  P  Y  *  P  *  H  C  S  H  A  P  R  Q  Q  I  R  S  P  T  S  R  G  C  F  N  *  R  G  *  I  F  G  R  E  G  S  P  I  L  H  G  N  F  C  I  R  S  D  Q  R  *  K  C  V  Y  *  S  S  H  A  D  I  P  D  R  Q  *  E  S  S  R  G  R  G  R  R  C  Y  F  N  R  T  T  *  R  T  D  D  *  Y  Q  R  *  R  I  C  L  E  K  V  W  V  L  F  E  L  G  L  T  *  D  N  S  S  S  F  I  Y  Q  L  *  I  V  I  K  S  M  I  S  S  P  C  F  L  S  L  W  V  S  R  L  W  D  I  R  F  I  L  *  S  *  E  Y  V  K  Q  R  V  L  M  K  N  S  E  G  G  S  G  T  A  S  F  *  L  Q  N  V  *  T  R  S  *  F  Y  V  F  W  L  M  A  *  K  T  G  D  I  F  A  I  T  C  Y  R  I  S  S  Y  L  S  R  I  Y  V  L  I  I  F  P  L  L  K  V  Y  F  L  S  *  V  A  M  F  V  V  H  D  M  C  S  L  I  N  *  S  R  T  W  Q  G  V  P  R  V  D  L  S  G  * </first_frame>
            <second_frame>  I  F  F  F  F  K  I  E  S  F  Q  *  T  F  T  I  W  S  I  K  K  *  N  Y  R  A  K  A  D  I  V  L  K  M  A  G  Y  R  G  D  D  E  Y  D  Y  L  F  K  L  V  L  I  G  D  S  G  V  G  K  S  N  L  L  S  R  F  T  K  N  E  F  N  L  E  S  K  S  T  I  G  V  E  F  A  T  K  S  L  N  I  D  G  K  V  I  K  A  Q  I  W  D  T  A  G  Q  E  R :   Y  R  A  I  T  S  A  Y  Y  R  G  A  V  G  A  L  L  V  Y  D  V  T  R  H  V  T  F  E  N  V  N  R  W  L  K  E  L  R  D  H  T  D  P  N  I  V  V  M  L  L  G  N  K  S  D  L  R  H  L  V  A  V  S  T  E  E  A  K  S  L  A  E  R  E  A  L  Y  F  M  E  T  S  A  L  E  A  T  N  V  E  N  A  F  T  E  A  L  T  Q  I  Y  R  I  V  S  K  K  A  V  E  A  G  D  E  G  A  T  S  T  A  P  P  K  G  Q  T  I  N  I  K  D  E  G  S  A  W  K  K  F  G  C  C  S  S  *  G  S  R  K  T  I  A  Q  A  L  Y  I  S  C  K  L  S  L  N  Q  *  F  P  L  P  V  F  S  H  F  G  Y  R  D  C  G  I  *  D  L  F  Y  S  H  E  N  T  *  S  S  A  F  S  *  K  I  P  K  E  D  Q  V  L  L  V  S  N  Y  R  M  S  K  Q  G  L  S  F  M  F  S  G  *  W  L  E  K  L  E  I  S  L  Q  *  P  V  T  E  Y  L  L  I  C  L  E  F  T  S  *  L  F  F  P  F  *  K  C  I  S  *  A  E  *  Q  C  L  L  F  M  I  C  V  V  *  *  I  K  V  E  H  G  K  V  C  P  E  L  I  *  V  D   </second_frame>
            <third_frame>   F  F  S  S  S  K  L  N  L  F  S  E  L  L  L  F  G  Q  S  R  S  E  I  T  E  Q  K  Q  I  *  F  *  R  W  Q  V  T  E  V  M  M  S  M  I  T  F  S  S  L  C  *  *  V  I  Q  V  W  V  N  L  I  C  F  P  G  S  P  K  M  N  S  I  W  S  L  N  Q  L  L  G  L  N  L  Q  P  K  V  L  I  L  M  V  K  L  L  K  L  R  F  G  I  L  L  V  K  K   : G  I  V  P  L  R  V  L  I  I  G  E  L  S  V  L  C  S  Y  M  M  L  L  D  M  L  P  L  K  T  S  T  G  G  *  R  N  *  E  T  I  L  T  L  T  L  *  S  C  S  *  A  T  N  Q  I  S  D  I  S  W  L  F  Q  L  K  R  L  N  L  W  Q  R  G  K  P  Y  T  S  W  K  L  L  H  *  K  R  P  T  L  K  M  R  L  L  K  L  S  R  R  Y  T  G  S  S  V  R  K  Q  S  R  Q  G  T  K  V  L  L  Q  P  H  H  L  K  D  R  R  L  I  S  K  M  K  D  L  L  G  K  S  L  G  A  V  R  A  R  A  H  V  R  Q  *  L  K  L  Y  I  S  V  V  N  C  H  *  I  N  D  F  L  S  L  F  S  L  T  L  G  I  A  I  V  G  Y  K  I  Y  S  I  V  M  R  I  R  E  A  A  R  S  H  E  K  F  R  R  R  I  R  Y  C  *  F  L  I  T  E  C  L  N  K  V  L  V  L  C  F  L  V  D  G  L  K  N  W  R  Y  L  C  N  N  L  L  P  N  I  F  L  F  V  S  N  L  R  L  N  Y  F  S  P  S  K  S  V  F  P  E  L  S  S  N  V  C  C  S  *  Y  V  *  F  D  K  L  K  *  N  M  A  R  C  A  Q  S  *  F  K  W  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29996" stop="30249"/>
                    <exon start="34424" stop="34859"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYRAKADIVLKMAGYRGDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVNRWLKELRDHTDPNIVVMLLGNKSDLRHLVAVSTEEAKSLAEREALYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSTAPPKGQTINIKDEGSAWKKFGCCSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32268" e_stop="33056"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="32268" e_stop="33056" e_length="789"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32268" stop="33056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331368" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGATGATTATAAGACATATAAAACATGTTAATAAAAAGGAGTAGAGAAGTATATGCGAAAATTCAAACTACAAACTTAGTTCCAAACTAAACTGTCATTTTGAAATATAGATGTTTTACATGGATTCTTCATTAATCATTATCATCAATATACGTGTTTGAGTGATTGTGATGTGGGCATGGTTACTTCATGTAGATACACTCAAAATTAGCGAAAAGTCTATAAGTACACATACTAGATACGTATGCACATCATAGGAATAATAAATCTTTGGATTAGTTAGGCATAAACTAAACCAAGATGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCAAGCCCACACCATGCAAAGCGAAGCCTGGTATTTAAGTGGGGAAGGGTAGAGGGGTGGACCCATTATCCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGCAGTGGGTCACGGATAAATAAATAATTGGAAGTCATATTTGTATGTGATACAACTTAAAGTACTGACAAAAAGAATTGAGATACAACTTAAGGTAACATTCGAACTTCTGTAGGATTTTTTAGTAAAGGTGGTTTTCAGGCCATTTTGAGCCACCTGTTACGTTCTAAATCCACCAGTATAGTTATCCGGTAACTGTCTATCAAAGCTTAGACAAATGGGAAGATGTCACCCTACATTTTTTGCCTATGCTAGGACTTGATCCCAGAAATCCCATGGTTTTAATCTATTTCATTGACACTACCCTGGCTTTTTATAACTTCT</gDNA_template>
            <first_frame> V  M  I  I  R  H  I  K  H  V  N  K  K  E  *  R  S  I  C  E  N  S  N  Y  K  L  S  S  K  L  N  C  H  F  E  I  *  M  F  Y  M  D  S  S  L  I  I  I  I  N  I  R  V  *  V  I  V  M  W  A  W  L  L  H  V  D  T  L  K  I  S  E  K  S  I  S  T  H  T  R  Y  V  C  T  S  *  E  *  *  I  F  G  L  V  R  H  K  L  N  Q  D  A  P  K  A  *  L  E  W  Q  K  V  E  D  L  *  L  R  S  Q  V  Q  A  H  T  M  Q  S  E  A  W  Y  L  S  G  E  G  *  R  G  G  P  I  I  H  R  V  *  K  V  V  I  G  P  K  G  S  G  S  R  I  N  K  *  L  E  V  I  F  V  C  D  T  T  *  S  T  D  K  K  N  *  D  T  T  *  G  N  I  R  T  S  V  G  F  F  S  K  G  G  F  Q  A  I  L  S  H  L  L  R  S  K  S  T  S  I  V  I  R  *  L  S  I  K  A  *  T  N  G  K  M  S  P  Y  I  F  C  L  C  *  D  L  I  P  E  I  P  W  F  *  S  I  S  L  T  L  P  W  L  F  I  T  S </first_frame>
            <second_frame>  *  *  L  *  D  I  *  N  M  L  I  K  R  S  R  E  V  Y  A  K  I  Q  T  T  N  L  V  P  N  *  T  V  I  L  K  Y  R  C  F  T  W  I  L  H  *  S  L  S  S  I  Y  V  F  E  *  L  *  C  G  H  G  Y  F  M  *  I  H  S  K  L  A  K  S  L  *  V  H  I  L  D  T  Y  A  H  H  R  N  N  K  S  L  D  *  L  G  I  N  *  T  K  M  P  P  R  P  S  S  S  G  K  R  W  R  I  C  D  L  G  R  R  F  K  P  T  P  C  K  A  K  P  G  I  *  V  G  K  G  R  G  V  D  P  L  S  T  E  F  R  R  L  *  L  V  Q  R  A  V  G  H  G  *  I  N  N  W  K  S  Y  L  Y  V  I  Q  L  K  V  L  T  K  R  I  E  I  Q  L  K  V  T  F  E  L  L  *  D  F  L  V  K  V  V  F  R  P  F  *  A  T  C  Y  V  L  N  P  P  V  *  L  S  G  N  C  L  S  K  L  R  Q  M  G  R  C  H  P  T  F  F  A  Y  A  R  T  *  S  Q  K  S  H  G  F  N  L  F  H  *  H  Y  P  G  F  L  *  L   </second_frame>
            <third_frame>   D  D  Y  K  T  Y  K  T  C  *  *  K  G  V  E  K  Y  M  R  K  F  K  L  Q  T  *  F  Q  T  K  L  S  F  *  N  I  D  V  L  H  G  F  F  I  N  H  Y  H  Q  Y  T  C  L  S  D  C  D  V  G  M  V  T  S  C  R  Y  T  Q  N  *  R  K  V  Y  K  Y  T  Y  *  I  R  M  H  I  I  G  I  I  N  L  W  I  S  *  A  *  T  K  P  R  C  P  Q  G  L  A  R  V  A  K  G  G  G  F  V  T  *  V  A  G  S  S  P  H  H  A  K  R  S  L  V  F  K  W  G  R  V  E  G  W  T  H  Y  P  P  S  L  E  G  C  D  W  S  K  G  Q  W  V  T  D  K  *  I  I  G  S  H  I  C  M  *  Y  N  L  K  Y  *  Q  K  E  L  R  Y  N  L  R  *  H  S  N  F  C  R  I  F  *  *  R  W  F  S  G  H  F  E  P  P  V  T  F  *  I  H  Q  Y  S  Y  P  V  T  V  Y  Q  S  L  D  K  W  E  D  V  T  L  H  F  L  P  M  L  G  L  D  P  R  N  P  M  V  L  I  Y  F  I  D  T  T  L  A  F  Y  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0075L20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="30602" e_stop="30617"/>
            <exon e_start="30965" e_stop="31570"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.879" acc_prob="0.000" e_score="0.625"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.625">
            <gDNA_exon_boundary e_start="30602" e_stop="30617" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.879" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30618" i_stop="30964" i_length="347"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="30965" e_stop="31570" e_length="606"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30602" stop="30617"/>
              <exon start="30965" stop="31570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344053" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGACCATTGGCTCAA : TATTAAGTGGTTGTTTTTTGTGTGTTTGGGATTTAGATGAGTGAGAAGTGCTTGTGGGTTTGTTGGTTTAATCTTATTTTTGGTAAGGTTCTTCAAATGATGTTGTGTTTATTGGTATTTTCTAAGAGTGTCTAGATGTGCTGTTGTTGCTTGATTGGGATTTCTTGTCTTTGGGTGTGGTATCTGTGTTCCTAATTGAAATTCGAGGGACATGGAGTGCTTACTGCAACCAATTATATATAAAAAAAAAAGAAGAATATTTTTCCGTGTTTGGTTCATGAAAAAGAATATCGTGAGAGCATTTTGAAGACGTAATGAAGTAAATCAAAGTGTGTTGCCCCAATGGACTTTTAGATGAGATGATCATACAATTCAACATTTGTGCAGGCTATGTGTGCTCCTAGTTGTTTAGATGCTATTGTGATGTCAATCTGAAAGCTAATTATAGAAATTGTAGTATCCAAATTTGTTGTTTTAAAATTATTTGAACTTATTCAGTTCCCGCACGAGTACATTGGCAGGTATGTTTTTTCTAATATGAAAAATAATTGACCAAAGTAACTCAATATTTCCTCATAATTTTTGAAATCCTTAGCTATTTTATTG</gDNA_template>
            <first_frame> R  T  I  G  S   : I  L  S  G  C  F  L  C  V  W  D  L  D  E  *  E  V  L  V  G  L  L  V  *  S  Y  F  W  *  G  S  S  N  D  V  V  F  I  G  I  F  *  E  C  L  D  V  L  L  L  L  D  W  D  F  L  S  L  G  V  V  S  V  F  L  I  E  I  R  G  T  W  S  A  Y  C  N  Q  L  Y  I  K  K  K  E  E  Y  F  S  V  F  G  S  *  K  R  I  S  *  E  H  F  E  D  V  M  K  *  I  K  V  C  C  P  N  G  L  L  D  E  M  I  I  Q  F  N  I  C  A  G  Y  V  C  S  *  L  F  R  C  Y  C  D  V  N  L  K  A  N  Y  R  N  C  S  I  Q  I  C  C  F  K  I  I  *  T  Y  S  V  P  A  R  V  H  W  Q  V  C  F  F  *  Y  E  K  *  L  T  K  V  T  Q  Y  F  L  I  I  F  E  I  L  S  Y  F  I  </first_frame>
            <second_frame>  G  P  L  A  Q  :  Y  *  V  V  V  F  C  V  F  G  I  *  M  S  E  K  C  L  W  V  C  W  F  N  L  I  F  G  K  V  L  Q  M  M  L  C  L  L  V  F  S  K  S  V  *  M  C  C  C  C  L  I  G  I  S  C  L  W  V  W  Y  L  C  S  *  L  K  F  E  G  H  G  V  L  T  A  T  N  Y  I  *  K  K  K  K  N  I  F  P  C  L  V  H  E  K  E  Y  R  E  S  I  L  K  T  *  *  S  K  S  K  C  V  A  P  M  D  F  *  M  R  *  S  Y  N  S  T  F  V  Q  A  M  C  A  P  S  C  L  D  A  I  V  M  S  I  *  K  L  I  I  E  I  V  V  S  K  F  V  V  L  K  L  F  E  L  I  Q  F  P  H  E  Y  I  G  R  Y  V  F  S  N  M  K  N  N  *  P  K  *  L  N  I  S  S  *  F  L  K  S  L  A  I  L  L </second_frame>
            <third_frame>   D  H  W  L  N :   I  K  W  L  F  F  V  C  L  G  F  R  *  V  R  S  A  C  G  F  V  G  L  I  L  F  L  V  R  F  F  K  *  C  C  V  Y  W  Y  F  L  R  V  S  R  C  A  V  V  A  *  L  G  F  L  V  F  G  C  G  I  C  V  P  N  *  N  S  R  D  M  E  C  L  L  Q  P  I  I  Y  K  K  K  R  R  I  F  F  R  V  W  F  M  K  K  N  I  V  R  A  F  *  R  R  N  E  V  N  Q  S  V  L  P  Q  W  T  F  R  *  D  D  H  T  I  Q  H  L  C  R  L  C  V  L  L  V  V  *  M  L  L  *  C  Q  S  E  S  *  L  *  K  L  *  Y  P  N  L  L  F  *  N  Y  L  N  L  F  S  S  R  T  S  T  L  A  G  M  F  F  L  I  *  K  I  I  D  Q  S  N  S  I  F  P  H  N  F  *  N  P  *  L  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0075L20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="39817" PGL_stop="35752"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39817" e_stop="39548"/>
            <exon e_start="39333" e_stop="39187"/>
            <exon e_start="36758" e_stop="36044"/>
            <exon e_start="35775" e_stop="35752"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.708"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39817" e_stop="39548" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39547" i_stop="39334" i_length="214"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39333" e_stop="39187" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39186" i_stop="36759" i_length="2428"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36758" e_stop="36044" e_length="715"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="36043" i_stop="35776" i_length="268"/>
          </intron>
          <exon e_serial="4" e_score="0.708">
            <gDNA_exon_boundary e_start="35775" e_stop="35752" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39817" stop="39548"/>
              <exon start="39333" stop="39187"/>
              <exon start="36758" stop="36044"/>
              <exon start="35775" stop="35752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323323" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTTATTTTCTCTCATTTTTTCTTCTAATTTCTATATGATATAAAACAAAATTTAGTTAATCCTCAAAAAGTTTTTATTTTCTTTCTTTTTTTTTTCTAAGTTATATAAGTTATTTTTGTGTTTTTTGGTCATGGAAGATAGTTCATACAAAAATCTATTTTTTCATAAACAAGAAGATTCCACCGGAACTCCACCGGATAATGCTGCTGATTCTTGTTTTTCCGGTGATGAAGCGGCGGAAGTTAGCATGCCATCACCTAGAAAAAG : TAGGAGAGGAGCAAAAAAGAAAGTAATTTCAGTGCCAATAATTGAAGGTGATGGATCAAGAAGTAAAGGGGAAGTTTATCCACCACAAGATTCTTGGTCTTGGAGAAAATATGGACAAAAACCAATTAAAGGATCACCTTATCCCAG : GGGATATTATCGATGCAGTAGCTCCAAAGGCTGTCCCGCCAGAAAACAAGTCGAGCGTAGCCGCCTGGACCCCACCATGCTTCTCATTACCTATTGCTCCGAACACAATCACCAAATCCCGGCCGCCGCCGCCGCCAAACACCACCATCACAACCACCCTACTACCACCACCAGTTCACCCACTACCTCTACCGGCACCGCCGGAGACAATAATGCTACTGCGGCTGTAGCCACGGACTCTACCGTAGTAGACAAATCATCCCCCGAAGAACCAGATCTATTTGCTTATCAACACGATAATGGATTTTCAGAGCTCGCCGGTGAGTTAGGTTGGTTTTCCGATATGGGAACAACAACTACGTTTATGGAGAGTACGTCGTCGTCCATGGCGGGATCCACGTGGAACGACAGTGACGTGGCGTTAATGTTGCCGATTCGAGAAGAGGATCAGTCGTTGTACGGTGATCTCGGTGAATTACCGGAATGTTCAGTTGTTTTCCGGCGGTACAGTGTGGAAACTCCCTGCTGCGGAGGTACAGGATAACAAATCATTTGTCAATTTTTCACTGAAATTGCCATATTTTTATTTTTTAATTATCTTCCTGACTTTTGGTTCCACGTTCTTCGTGACCCTTTTTTTTAATTTTATTTTTATGTAAAGATCTGGTAGATTAAAAAAAAAAAGAAATATACTTTGATTTGATTTTTACTTGAA : AAAAAAAAAAAAAACTATATTCAA</gDNA_template>
            <first_frame> L  F  I  F  S  H  F  F  F  *  F  L  Y  D  I  K  Q  N  L  V  N  P  Q  K  V  F  I  F  F  L  F  F  F  *  V  I  *  V  I  F  V  F  F  G  H  G  R  *  F  I  Q  K  S  I  F  S  *  T  R  R  F  H  R  N  S  T  G  *  C  C  *  F  L  F  F  R  *  *  S  G  G  S  *  H  A  I  T  *  K  K  :  *  E  R  S  K  K  E  S  N  F  S  A  N  N  *  R  *  W  I  K  K  *  R  G  S  L  S  T  T  R  F  L  V  L  E  K  I  W  T  K  T  N  *  R  I  T  L  S  Q  :  G  I  L  S  M  Q  *  L  Q  R  L  S  R  Q  K  T  S  R  A  *  P  P  G  P  H  H  A  S  H  Y  L  L  L  R  T  Q  S  P  N  P  G  R  R  R  R  Q  T  P  P  S  Q  P  P  Y  Y  H  H  Q  F  T  H  Y  L  Y  R  H  R  R  R  Q  *  C  Y  C  G  C  S  H  G  L  Y  R  S  R  Q  I  I  P  R  R  T  R  S  I  C  L  S  T  R  *  W  I  F  R  A  R  R  *  V  R  L  V  F  R  Y  G  N  N  N  Y  V  Y  G  E  Y  V  V  V  H  G  G  I  H  V  E  R  Q  *  R  G  V  N  V  A  D  S  R  R  G  S  V  V  V  R  *  S  R  *  I  T  G  M  F  S  C  F  P  A  V  Q  C  G  N  S  L  L  R  R  Y  R  I  T  N  H  L  S  I  F  H  *  N  C  H  I  F  I  F  *  L  S  S  *  L  L  V  P  R  S  S  *  P  F  F  L  I  L  F  L  C  K  D  L  V  D  *  K  K  K  E  I  Y  F  D  L  I  F  T  *   : K  K  K  K  K  L  Y  S  </first_frame>
            <second_frame>  F  L  F  S  L  I  F  S  S  N  F  Y  M  I  *  N  K  I  *  L  I  L  K  K  F  L  F  S  F  F  F  F  S  K  L  Y  K  L  F  L  C  F  L  V  M  E  D  S  S  Y  K  N  L  F  F  H  K  Q  E  D  S  T  G  T  P  P  D  N  A  A  D  S  C  F  S  G  D  E  A  A  E  V  S  M  P  S  P  R  K  S :   R  R  G  A  K  K  K  V  I  S  V  P  I  I  E  G  D  G  S  R  S  K  G  E  V  Y  P  P  Q  D  S  W  S  W  R  K  Y  G  Q  K  P  I  K  G  S  P  Y  P  R :   G  Y  Y  R  C  S  S  S  K  G  C  P  A  R  K  Q  V  E  R  S  R  L  D  P  T  M  L  L  I  T  Y  C  S  E  H  N  H  Q  I  P  A  A  A  A  A  K  H  H  H  H  N  H  P  T  T  T  T  S  S  P  T  T  S  T  G  T  A  G  D  N  N  A  T  A  A  V  A  T  D  S  T  V  V  D  K  S  S  P  E  E  P  D  L  F  A  Y  Q  H  D  N  G  F  S  E  L  A  G  E  L  G  W  F  S  D  M  G  T  T  T  T  F  M  E  S  T  S  S  S  M  A  G  S  T  W  N  D  S  D  V  A  L  M  L  P  I  R  E  E  D  Q  S  L  Y  G  D  L  G  E  L  P  E  C  S  V  V  F  R  R  Y  S  V  E  T  P  C  C  G  G  T  G  *  Q  I  I  C  Q  F  F  T  E  I  A  I  F  L  F  F  N  Y  L  P  D  F  W  F  H  V  L  R  D  P  F  F  *  F  Y  F  Y  V  K  I  W  *  I  K  K  K  K  K  Y  T  L  I  *  F  L  L  E  :  K  K  K  K  N  Y  I  Q </second_frame>
            <third_frame>   F  Y  F  L  S  F  F  L  L  I  S  I  *  Y  K  T  K  F  S  *  S  S  K  S  F  Y  F  L  S  F  F  F  L  S  Y  I  S  Y  F  C  V  F  W  S  W  K  I  V  H  T  K  I  Y  F  F  I  N  K  K  I  P  P  E  L  H  R  I  M  L  L  I  L  V  F  P  V  M  K  R  R  K  L  A  C  H  H  L  E  K   : V  G  E  E  Q  K  R  K  *  F  Q  C  Q  *  L  K  V  M  D  Q  E  V  K  G  K  F  I  H  H  K  I  L  G  L  G  E  N  M  D  K  N  Q  L  K  D  H  L  I  P   : G  D  I  I  D  A  V  A  P  K  A  V  P  P  E  N  K  S  S  V  A  A  W  T  P  P  C  F  S  L  P  I  A  P  N  T  I  T  K  S  R  P  P  P  P  P  N  T  T  I  T  T  T  L  L  P  P  P  V  H  P  L  P  L  P  A  P  P  E  T  I  M  L  L  R  L  *  P  R  T  L  P  *  *  T  N  H  P  P  K  N  Q  I  Y  L  L  I  N  T  I  M  D  F  Q  S  S  P  V  S  *  V  G  F  P  I  W  E  Q  Q  L  R  L  W  R  V  R  R  R  P  W  R  D  P  R  G  T  T  V  T  W  R  *  C  C  R  F  E  K  R  I  S  R  C  T  V  I  S  V  N  Y  R  N  V  Q  L  F  S  G  G  T  V  W  K  L  P  A  A  E  V  Q  D  N  K  S  F  V  N  F  S  L  K  L  P  Y  F  Y  F  L  I  I  F  L  T  F  G  S  T  F  F  V  T  L  F  F  N  F  I  F  M  *  R  S  G  R  L  K  K  K  R  N  I  L  *  F  D  F  Y  L  K :   K  K  K  K  T  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39759" stop="39548"/>
                    <exon start="39333" stop="39187"/>
                    <exon start="36758" stop="36215"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LILKKFLFSFFFFSKLYKLFLCFLVMEDSSYKNLFFHKQEDSTGTPPDNAADSCFSGDEAAEVSMPSPRKSRRGAKKKVISVPIIEGDGSRSKGEVYPPQDSWSWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRLDPTMLLITYCSEHNHQIPAAAAAKHHHHNHPTTTTSSPTTSTGTAGDNNATAAVATDSTVVDKSSPEEPDLFAYQHDNGFSELAGELGWFSDMGTTTTFMESTSSSMAGSTWNDSDVALMLPIREEDQSLYGDLGELPECSVVFRRYSVETPCCGGTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="44442" PGL_stop="44931"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44442" e_stop="44931"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="44442" e_stop="44931" e_length="490"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44442" stop="44931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327974" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGAGATCCGCCATTAAACAATTCCTGATCCGATTGAAGCAATCCACGCCGAGCCTCTAAGTTTTGATAATATTTATTATCGAATTGGCTCGGCGTCTGGATATCTAACGGGGCTAAATTACTGTCTCCGCCAGATGCAGGGCATGTGGCCCCGAGTGTGGCGGCGAATTCTGAGTTGATGTTGGTGGCGTTGTTGACGCGGTCGCGGAAACTGGCGCATCGGGCTTGGCCGATTGTGTGGCTGCCGGAGAGGGCGGTCATCTCGGCGGCGTTAAGGCCTTTGGCGGAGAACATGGAGATCAAAGTTGAAAGGGTGGAAGTTGGCATAGGGATTTGGGCGTTGGCGGAGCTTAGGCTTGCGGTTCTTGCGTCTCTTCGGCCCAATTGCACGGTCCATGTTGGCCCTCCTAGCTGCGTAAATACGATGTTATAAATATATATTTAAATTTGTATAAAATTAATTTAATAAAAAAAATATATTTTGTTTGAC</gDNA_template>
            <first_frame> L  R  S  A  I  K  Q  F  L  I  R  L  K  Q  S  T  P  S  L  *  V  L  I  I  F  I  I  E  L  A  R  R  L  D  I  *  R  G  *  I  T  V  S  A  R  C  R  A  C  G  P  E  C  G  G  E  F  *  V  D  V  G  G  V  V  D  A  V  A  E  T  G  A  S  G  L  A  D  C  V  A  A  G  E  G  G  H  L  G  G  V  K  A  F  G  G  E  H  G  D  Q  S  *  K  G  G  S  W  H  R  D  L  G  V  G  G  A  *  A  C  G  S  C  V  S  S  A  Q  L  H  G  P  C  W  P  S  *  L  R  K  Y  D  V  I  N  I  Y  L  N  L  Y  K  I  N  L  I  K  K  I  Y  F  V  *  </first_frame>
            <second_frame>  *  D  P  P  L  N  N  S  *  S  D  *  S  N  P  R  R  A  S  K  F  *  *  Y  L  L  S  N  W  L  G  V  W  I  S  N  G  A  K  L  L  S  P  P  D  A  G  H  V  A  P  S  V  A  A  N  S  E  L  M  L  V  A  L  L  T  R  S  R  K  L  A  H  R  A  W  P  I  V  W  L  P  E  R  A  V  I  S  A  A  L  R  P  L  A  E  N  M  E  I  K  V  E  R  V  E  V  G  I  G  I  W  A  L  A  E  L  R  L  A  V  L  A  S  L  R  P  N  C  T  V  H  V  G  P  P  S  C  V  N  T  M  L  *  I  Y  I  *  I  C  I  K  L  I  *  *  K  K  Y  I  L  F  D </second_frame>
            <third_frame>   E  I  R  H  *  T  I  P  D  P  I  E  A  I  H  A  E  P  L  S  F  D  N  I  Y  Y  R  I  G  S  A  S  G  Y  L  T  G  L  N  Y  C  L  R  Q  M  Q  G  M  W  P  R  V  W  R  R  I  L  S  *  C  W  W  R  C  *  R  G  R  G  N  W  R  I  G  L  G  R  L  C  G  C  R  R  G  R  S  S  R  R  R  *  G  L  W  R  R  T  W  R  S  K  L  K  G  W  K  L  A  *  G  F  G  R  W  R  S  L  G  L  R  F  L  R  L  F  G  P  I  A  R  S  M  L  A  L  L  A  A  *  I  R  C  Y  K  Y  I  F  K  F  V  *  N  *  F  N  K  K  N  I  F  C  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44512" stop="44874"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLLSNWLGVWISNGAKLLSPPDAGHVAPSVAANSELMLVALLTRSRKLAHRAWPIVWLPERAVISAALRPLAENMEIKVERVEVGIGIWALAELRLAVLASLRPNCTVHVGPPSCVNTML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="54522" PGL_stop="51097"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54522" e_stop="54225"/>
            <exon e_start="52930" e_stop="52683"/>
            <exon e_start="52358" e_stop="52223"/>
            <exon e_start="51766" e_stop="51508"/>
            <exon e_start="51359" e_stop="51227"/>
            <exon e_start="51103" e_stop="51097"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.898" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.567" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54522" e_stop="54225" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="0.898" acc_prob="0.988">
            <gDNA_intron_boundary i_start="54224" i_stop="52931" i_length="1294"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52930" e_stop="52683" e_length="248"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="52682" i_stop="52359" i_length="324"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52358" e_stop="52223" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.865" acc_prob="0.990">
            <gDNA_intron_boundary i_start="52222" i_stop="51767" i_length="456"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51766" e_stop="51508" e_length="259"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.994">
            <gDNA_intron_boundary i_start="51507" i_stop="51360" i_length="148"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="51359" e_stop="51227" e_length="133"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.567">
            <gDNA_intron_boundary i_start="51226" i_stop="51104" i_length="123"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="51103" e_stop="51097" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54522" stop="54225"/>
              <exon start="52930" stop="52683"/>
              <exon start="52358" stop="52223"/>
              <exon start="51766" stop="51508"/>
              <exon start="51359" stop="51227"/>
              <exon start="51103" stop="51097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326054" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAGAAGACTGTTTTGTGACTCAGTCCCATTTAGTCTTGTCAACATCACAGGACTAGTATTGTACTTCTTAAACTTCTCTCTTTAATGGCTTCTCTATAACCCCTCTTTGGGTGTTTTCCCTTTTCTTTGCTAGCACCATGGAAGCAGAAAATGATGAGTACCATAAGAAAGAAAGGGCAATTGCAGTTACTATACTGGTCTTTGCTTCTCTTGCCATTGCTTCTTTGTTTGTAGCCTNTAGTTACTATTGTTATATCCGTAATAAAGTTGCCAAGCGTCTCAAGAACCGCACTT : ATACGGAGAGTGCTTGTGAGGACAAGGGCAATAGTTTCTCCAATCTGGAAGTTATTGCAGAGAAGGGACTTCAGGTTTTCACATTTAAGCAGCTGCATTCAGCAACTGGTGGATTTGGAAAATCTAATGTGATTGGAAATGGTGCTTTCGGGTCAGTATATAGAGGAGTACTTCAAGATGGTAGGAAGGTTGCAATTAAGCTGATGGATCAGGCTGGAAAACAGGGGGAGGAAGAATTCAAAGTGGAG : GTGGAGTTGCTATGCCGCTTGCGCTCACCGTATTTGCTGTCATTGATTGGCTATTGTTCAGAAAGCAGCCATAAATTGCTTGTATATGAGTTCATGGCAAATGGTGGTTTACAGGAGCACTTGTATCCAATCAAAG : GTTCCAATAATTTTTGTCCAAAGTTGGACTGGAAGACCCGGTTAAGAATAGCGTTGGAGGCTGCTAAAGGTTTGGAATATCTACATGAGCATGTCAATCCCCCAGTTATACATAGAGACCTCAAAAGTAGCAATATTCTTTTGGACAAAAATTTCCATGCCAAAGTTTCTGACTTCGGATTGGCCAAGCTTGGATCTGATAAAGCTGGTGGACATGTCTCTACCCGAGTTTTGGGAACACAGGGATATGTTGCTCCAGA : ATATGCATTAACAGGACACTTGACCACCAAATCAGATGTTTACAGTTATGGGGTTGTCCTCCTAGAGTTGTTGACAGGGAGAGTTCCAGTTGATATGAAGAGATCTCCTGGCGAAGGCGTTCTTGTTTCTTGG : GCATTGC</gDNA_template>
            <first_frame> K  K  E  D  C  F  V  T  Q  S  H  L  V  L  S  T  S  Q  D  *  Y  C  T  S  *  T  S  L  F  N  G  F  S  I  T  P  L  W  V  F  S  L  F  F  A  S  T  M  E  A  E  N  D  E  Y  H  K  K  E  R  A  I  A  V  T  I  L  V  F  A  S  L  A  I  A  S  L  F  V  A  F  S  Y  Y  C  Y  I  R  N  K  V  A  K  R  L  K  N  R  T   : Y  T  E  S  A  C  E  D  K  G  N  S  F  S  N  L  E  V  I  A  E  K  G  L  Q  V  F  T  F  K  Q  L  H  S  A  T  G  G  F  G  K  S  N  V  I  G  N  G  A  F  G  S  V  Y  R  G  V  L  Q  D  G  R  K  V  A  I  K  L  M  D  Q  A  G  K  Q  G  E  E  E  F  K  V  E  :  V  E  L  L  C  R  L  R  S  P  Y  L  L  S  L  I  G  Y  C  S  E  S  S  H  K  L  L  V  Y  E  F  M  A  N  G  G  L  Q  E  H  L  Y  P  I  K   : G  S  N  N  F  C  P  K  L  D  W  K  T  R  L  R  I  A  L  E  A  A  K  G  L  E  Y  L  H  E  H  V  N  P  P  V  I  H  R  D  L  K  S  S  N  I  L  L  D  K  N  F  H  A  K  V  S  D  F  G  L  A  K  L  G  S  D  K  A  G  G  H  V  S  T  R  V  L  G  T  Q  G  Y  V  A  P  E :   Y  A  L  T  G  H  L  T  T  K  S  D  V  Y  S  Y  G  V  V  L  L  E  L  L  T  G  R  V  P  V  D  M  K  R  S  P  G  E  G  V  L  V  S  W  :  A  L  </first_frame>
            <second_frame>  K  K  K  T  V  L  *  L  S  P  I  *  S  C  Q  H  H  R  T  S  I  V  L  L  K  L  L  S  L  M  A  S  L  *  P  L  F  G  C  F  P  F  S  L  L  A  P  W  K  Q  K  M  M  S  T  I  R  K  K  G  Q  L  Q  L  L  Y  W  S  L  L  L  L  P  L  L  L  C  L  *  P  L  V  T  I  V  I  S  V  I  K  L  P  S  V  S  R  T  A  L  :  I  R  R  V  L  V  R  T  R  A  I  V  S  P  I  W  K  L  L  Q  R  R  D  F  R  F  S  H  L  S  S  C  I  Q  Q  L  V  D  L  E  N  L  M  *  L  E  M  V  L  S  G  Q  Y  I  E  E  Y  F  K  M  V  G  R  L  Q  L  S  *  W  I  R  L  E  N  R  G  R  K  N  S  K  W  R :   W  S  C  Y  A  A  C  A  H  R  I  C  C  H  *  L  A  I  V  Q  K  A  A  I  N  C  L  Y  M  S  S  W  Q  M  V  V  Y  R  S  T  C  I  Q  S  K  :  V  P  I  I  F  V  Q  S  W  T  G  R  P  G  *  E  *  R  W  R  L  L  K  V  W  N  I  Y  M  S  M  S  I  P  Q  L  Y  I  E  T  S  K  V  A  I  F  F  W  T  K  I  S  M  P  K  F  L  T  S  D  W  P  S  L  D  L  I  K  L  V  D  M  S  L  P  E  F  W  E  H  R  D  M  L  L  Q   : N  M  H  *  Q  D  T  *  P  P  N  Q  M  F  T  V  M  G  L  S  S  *  S  C  *  Q  G  E  F  Q  L  I  *  R  D  L  L  A  K  A  F  L  F  L  G :   H  C </second_frame>
            <third_frame>   K  R  R  L  F  C  D  S  V  P  F  S  L  V  N  I  T  G  L  V  L  Y  F  L  N  F  S  L  *  W  L  L  Y  N  P  S  L  G  V  F  P  F  L  C  *  H  H  G  S  R  K  *  *  V  P  *  E  R  K  G  N  C  S  Y  Y  T  G  L  C  F  S  C  H  C  F  F  V  C  S  L  *  L  L  L  L  Y  P  *  *  S  C  Q  A  S  Q  E  P  H  L :   Y  G  E  C  L  *  G  Q  G  Q  *  F  L  Q  S  G  S  Y  C  R  E  G  T  S  G  F  H  I  *  A  A  A  F  S  N  W  W  I  W  K  I  *  C  D  W  K  W  C  F  R  V  S  I  *  R  S  T  S  R  W  *  E  G  C  N  *  A  D  G  S  G  W  K  T  G  G  G  R  I  Q  S  G   : G  G  V  A  M  P  L  A  L  T  V  F  A  V  I  D  W  L  L  F  R  K  Q  P  *  I  A  C  I  *  V  H  G  K  W  W  F  T  G  A  L  V  S  N  Q  R :   F  Q  *  F  L  S  K  V  G  L  E  D  P  V  K  N  S  V  G  G  C  *  R  F  G  I  S  T  *  A  C  Q  S  P  S  Y  T  *  R  P  Q  K  *  Q  Y  S  F  G  Q  K  F  P  C  Q  S  F  *  L  R  I  G  Q  A  W  I  *  *  S  W  W  T  C  L  Y  P  S  F  G  N  T  G  I  C  C  S  R  :  I  C  I  N  R  T  L  D  H  Q  I  R  C  L  Q  L  W  G  C  P  P  R  V  V  D  R  E  S  S  S  *  Y  E  E  I  S  W  R  R  R  S  C  F  L   : G  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54447" stop="54225"/>
                    <exon start="52930" stop="52683"/>
                    <exon start="52358" stop="52223"/>
                    <exon start="51766" stop="51508"/>
                    <exon start="51359" stop="51227"/>
                    <exon start="51103" stop="51098"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1005</number_coding_nucleotides>
                  <number_encoded_amino_acids>335</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSLFNGFSITPLWVFSLFFASTMEAENDEYHKKERAIAVTILVFASLAIASLFVAFSYYCYIRNKVAKRLKNRTYTESACEDKGNSFSNLEVIAEKGLQVFTFKQLHSATGGFGKSNVIGNGAFGSVYRGVLQDGRKVAIKLMDQAGKQGEEEFKVEVELLCRLRSPYLLSLIGYCSESSHKLLVYEFMANGGLQEHLYPIKGSNNFCPKLDWKTRLRIALEAAKGLEYLHEHVNPPVIHRDLKSSNILLDKNFHAKVSDFGLAKLGSDKAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRSPGEGVLVSWAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="58152" PGL_stop="58582"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58152" e_stop="58582"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="58152" e_stop="58582" e_length="431"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58152" stop="58582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340982" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTGATAGTGGAAAAGGCACAAAAATGGGGAAAGAACCAACATGGCATGAATTACTAGGAAGCAACAACTGGGAAGGTCTTCTTGAACCATTACACCTCAATCTCCGGCGACTCATACTCCGGTGCGGCGACTTTTGTCAAGCAACTTACGACGCCTTCAACAATGACGAATACTCCATGTACTGTGGCAGTAGTCGTTACGGTAAAAGTTCACTTTTCCACAAAGTCATGTTCAAATCCGCCTCAGATTACCAAATCGTCAGCTTCCTTTACGCCACTGCTCGTGTTGGTGCCCATAAAGCCCTCTTCCTCCACTCTCTTTCTCGTGAATCATGGGATCGTGAATCCAATTGGATCGGGTTTATAGCTATAACTAACGACGAAATCAGTGAACAACTGGGTCGTCGTGAAATCTACATAGCATTTCGTG</gDNA_template>
            <first_frame> F  *  *  W  K  R  H  K  N  G  E  R  T  N  M  A  *  I  T  R  K  Q  Q  L  G  R  S  S  *  T  I  T  P  Q  S  P  A  T  H  T  P  V  R  R  L  L  S  S  N  L  R  R  L  Q  Q  *  R  I  L  H  V  L  W  Q  *  S  L  R  *  K  F  T  F  P  Q  S  H  V  Q  I  R  L  R  L  P  N  R  Q  L  P  L  R  H  C  S  C  W  C  P  *  S  P  L  P  P  L  S  F  S  *  I  M  G  S  *  I  Q  L  D  R  V  Y  S  Y  N  *  R  R  N  Q  *  T  T  G  S  S  *  N  L  H  S  I  S   </first_frame>
            <second_frame>  S  D  S  G  K  G  T  K  M  G  K  E  P  T  W  H  E  L  L  G  S  N  N  W  E  G  L  L  E  P  L  H  L  N  L  R  R  L  I  L  R  C  G  D  F  C  Q  A  T  Y  D  A  F  N  N  D  E  Y  S  M  Y  C  G  S  S  R  Y  G  K  S  S  L  F  H  K  V  M  F  K  S  A  S  D  Y  Q  I  V  S  F  L  Y  A  T  A  R  V  G  A  H  K  A  L  F  L  H  S  L  S  R  E  S  W  D  R  E  S  N  W  I  G  F  I  A  I  T  N  D  E  I  S  E  Q  L  G  R  R  E  I  Y  I  A  F  R  </second_frame>
            <third_frame>   L  I  V  E  K  A  Q  K  W  G  K  N  Q  H  G  M  N  Y  *  E  A  T  T  G  K  V  F  L  N  H  Y  T  S  I  S  G  D  S  Y  S  G  A  A  T  F  V  K  Q  L  T  T  P  S  T  M  T  N  T  P  C  T  V  A  V  V  V  T  V  K  V  H  F  S  T  K  S  C  S  N  P  P  Q  I  T  K  S  S  A  S  F  T  P  L  L  V  L  V  P  I  K  P  S  S  S  T  L  F  L  V  N  H  G  I  V  N  P  I  G  S  G  L  *  L  *  L  T  T  K  S  V  N  N  W  V  V  V  K  S  T  *  H  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58153" stop="58581"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDSGKGTKMGKEPTWHELLGSNNWEGLLEPLHLNLRRLILRCGDFCQATYDAFNNDEYSMYCGSSRYGKSSLFHKVMFKSASDYQIVSFLYATARVGAHKALFLHSLSRESWDRESNWIGFIAITNDEISEQLGRREIYIAFR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="64009" PGL_stop="68814"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64009" e_stop="64222"/>
            <exon e_start="65122" e_stop="65214"/>
            <exon e_start="65373" e_stop="65432"/>
            <exon e_start="65508" e_stop="65780"/>
            <exon e_start="65857" e_stop="65931"/>
            <exon e_start="66008" e_stop="66064"/>
            <exon e_start="66533" e_stop="66673"/>
            <exon e_start="66775" e_stop="66825"/>
            <exon e_start="66907" e_stop="67002"/>
            <exon e_start="67136" e_stop="67219"/>
            <exon e_start="67318" e_stop="67419"/>
            <exon e_start="68357" e_stop="68814"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.469" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.828" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.051" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64009" e_stop="64222" e_length="214"/>
          </exon>
          <intron i_serial="1" don_prob="0.469" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64223" i_stop="65121" i_length="899"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65122" e_stop="65214" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.957">
            <gDNA_intron_boundary i_start="65215" i_stop="65372" i_length="158"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65373" e_stop="65432" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.944">
            <gDNA_intron_boundary i_start="65433" i_stop="65507" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65508" e_stop="65780" e_length="273"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.828">
            <gDNA_intron_boundary i_start="65781" i_stop="65856" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65857" e_stop="65931" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.892" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65932" i_stop="66007" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="66008" e_stop="66064" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.974">
            <gDNA_intron_boundary i_start="66065" i_stop="66532" i_length="468"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="66533" e_stop="66673" e_length="141"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="66674" i_stop="66774" i_length="101"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="66775" e_stop="66825" e_length="51"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.051">
            <gDNA_intron_boundary i_start="66826" i_stop="66906" i_length="81"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="66907" e_stop="67002" e_length="96"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.973">
            <gDNA_intron_boundary i_start="67003" i_stop="67135" i_length="133"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="67136" e_stop="67219" e_length="84"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="67220" i_stop="67317" i_length="98"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="67318" e_stop="67419" e_length="102"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67420" i_stop="68356" i_length="937"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="68357" e_stop="68814" e_length="458"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64009" stop="64222"/>
              <exon start="65122" stop="65214"/>
              <exon start="65373" stop="65432"/>
              <exon start="65508" stop="65780"/>
              <exon start="65857" stop="65931"/>
              <exon start="66008" stop="66064"/>
              <exon start="66533" stop="66673"/>
              <exon start="66775" stop="66825"/>
              <exon start="66907" stop="67002"/>
              <exon start="67136" stop="67219"/>
              <exon start="67318" stop="67419"/>
              <exon start="68357" stop="68814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317439" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAGAGTAGCAGAGGAGAAGAGAGCACATGGCCTCGATACCGCTGGGACCTCAGCACCATAATCCGCCGGAAAATCACCATCACCACCACCTTCAGCCGCCGCCGCAGCTCGTGCAGCAGCAGCAGCAACAGCCTGTGAATCGTGAACTAGGAGGAGGAGGAGGAGCTGCAGTAAGGAACGCCGGAGCACGACCGGAAATGGAATCCGAAAAG : GAAATGTCAGCTGCTGTTGTTGAGGGTAATGGTGCCGTCACTGGTCACATAATTTCCACCACCATTGGAGGCAAGAATGGAGAACCAAAAAGG : ACCATCAGTTATATGGCAGAGCGAGTTGTCGGTACAGGGTCCTTTGGGATAGTGTTTCAG : GCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTACAGGACAAACGGTATAAAAATCGTGAACTACAACTGATGCGCTTGATGGATCACCCAAATGTCATTACTCTAAAGCACTGCTTCTTTTCCACGACTAGTAGAGATGAGCTTTTTCTTAATTTGGTCATGGATTATGTCCCTGAAAGTTTATACAAGGTTTTAAAGCACTATAGCAATTCAAATCAAAGGATGCCACTCATATATGTCAAACTTTACATGTATCAG : ATATTCAGAGGGCTGGCTTACATTCATAATGTTCCAAGGATTTGCCATAGAGATGTGAAACCTCAAAATCTTTTG : GTTGATCCTCTGACCCATCAAGTCAAGCTGTGTGATTTTGGAAGTGCAAAAGTCCTG : GTAAATGGTGAAGCAAATATTTCATACATTTGCTCTCGCTACTACAGAGCTCCAGAACTCATATTTGGTGCCACAGAGTATACAACATCAATTGATATTTGGTCAGCAGGCTGTGTCCTTGCTGAGCTTCTTCTGGGGCAG : CCGCTCTTTCCTGGCGAAAATGCAGTAGATCAACTGGTGGAGATCATCAAG : GTCCTTGGTACTCCTACTCGGGAAGAAATTCGATGTATGAACCCAAACTACACAGATTTCAGATTCCCACAGATAAAAGCTCATCCTTGGCACAAG : GTATTCCATAAAAGAATGCCTCCTGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCA : CTAGAAGCATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAG : TTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAATTGTACTAATGTAATATAGAGTTGGTGTATCAGAAAAAATATATAGGGAGTCCTTGTGGATTAATGTAACCATGCATTTTGGCGTAACCAGTGGCTATGCACGCATGTAAAAGTTGTATGCATATAGCCGCTGTTTGGCTTACAAGAAGTGATCCTGTCTCTACTTGTGTCCTCTTTTAGCTAATAGCAGACCTGTTGCCTCTTTTGTACATTGTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAGTTAAGCAGATTTCCTTGAGAGACCTTCTGGAGCACTAGGACTTGTAGCTTTGGGTTGTAGTTATATTTATATGCAAGTTGTTTTTAGCTCT</gDNA_template>
            <first_frame> *  R  V  A  E  E  K  R  A  H  G  L  D  T  A  G  T  S  A  P  *  S  A  G  K  S  P  S  P  P  P  S  A  A  A  A  A  R  A  A  A  A  A  T  A  C  E  S  *  T  R  R  R  R  R  S  C  S  K  E  R  R  S  T  T  G  N  G  I  R  K   : G  N  V  S  C  C  C  *  G  *  W  C  R  H  W  S  H  N  F  H  H  H  W  R  Q  E  W  R  T  K  K   : D  H  Q  L  Y  G  R  A  S  C  R  Y  R  V  L  W  D  S  V  S   : G  K  M  L  G  N  W  R  D  C  G  H  K  E  G  F  T  G  Q  T  V  *  K  S  *  T  T  T  D  A  L  D  G  S  P  K  C  H  Y  S  K  A  L  L  L  F  H  D  *  *  R  *  A  F  S  *  F  G  H  G  L  C  P  *  K  F  I  Q  G  F  K  A  L  *  Q  F  K  S  K  D  A  T  H  I  C  Q  T  L  H  V  S   : D  I  Q  R  A  G  L  H  S  *  C  S  K  D  L  P  *  R  C  E  T  S  K  S  F   : G  *  S  S  D  P  S  S  Q  A  V  *  F  W  K  C  K  S  P   : G  K  W  *  S  K  Y  F  I  H  L  L  S  L  L  Q  S  S  R  T  H  I  W  C  H  R  V  Y  N  I  N  *  Y  L  V  S  R  L  C  P  C  *  A  S  S  G  A   : A  A  L  S  W  R  K  C  S  R  S  T  G  G  D  H  Q   : G  P  W  Y  S  Y  S  G  R  N  S  M  Y  E  P  K  L  H  R  F  Q  I  P  T  D  K  S  S  S  L  A  Q   : G  I  P  *  K  N  A  S  *  S  N  *  S  C  L  T  A  S  S  I  F  T  K  S  S  L  Y  C   : T  R  S  M  C  T  F  V  L  *  *  A  S  *  A  Q  C  P  S  P  *  W  T  S  I  S  T  S  F  Q  L  *  T  R   : V  N  W  S  F  T  *  F  G  Q  Q  A  D  P  *  A  C  V  E  A  T  W  F  E  F  P  I  S  W  C  D  V  I  V  L  M  *  Y  R  V  G  V  S  E  K  I  Y  R  E  S  L  W  I  N  V  T  M  H  F  G  V  T  S  G  Y  A  R  M  *  K  L  Y  A  Y  S  R  C  L  A  Y  K  K  *  S  C  L  Y  L  C  P  L  L  A  N  S  R  P  V  A  S  F  V  H  C  F  *  *  E  E  F  R  *  E  Y  K  V  I  N  I  V  M  S  S  *  A  D  F  L  E  R  P  S  G  A  L  G  L  V  A  L  G  C  S  Y  I  Y  M  Q  V  V  F  S  S </first_frame>
            <second_frame>  E  E  *  Q  R  R  R  E  H  M  A  S  I  P  L  G  P  Q  H  H  N  P  P  E  N  H  H  H  H  H  L  Q  P  P  P  Q  L  V  Q  Q  Q  Q  Q  Q  P  V  N  R  E  L  G  G  G  G  G  A  A  V  R  N  A  G  A  R  P  E  M  E  S  E  K  :  E  M  S  A  A  V  V  E  G  N  G  A  V  T  G  H  I  I  S  T  T  I  G  G  K  N  G  E  P  K  R  :  T  I  S  Y  M  A  E  R  V  V  G  T  G  S  F  G  I  V  F  Q  :  A  K  C  L  E  T  G  E  T  V  A  I  K  K  V  L  Q  D  K  R  Y  K  N  R  E  L  Q  L  M  R  L  M  D  H  P  N  V  I  T  L  K  H  C  F  F  S  T  T  S  R  D  E  L  F  L  N  L  V  M  D  Y  V  P  E  S  L  Y  K  V  L  K  H  Y  S  N  S  N  Q  R  M  P  L  I  Y  V  K  L  Y  M  Y  Q  :  I  F  R  G  L  A  Y  I  H  N  V  P  R  I  C  H  R  D  V  K  P  Q  N  L  L  :  V  D  P  L  T  H  Q  V  K  L  C  D  F  G  S  A  K  V  L  :  V  N  G  E  A  N  I  S  Y  I  C  S  R  Y  Y  R  A  P  E  L  I  F  G  A  T  E  Y  T  T  S  I  D  I  W  S  A  G  C  V  L  A  E  L  L  L  G  Q  :  P  L  F  P  G  E  N  A  V  D  Q  L  V  E  I  I  K  :  V  L  G  T  P  T  R  E  E  I  R  C  M  N  P  N  Y  T  D  F  R  F  P  Q  I  K  A  H  P  W  H  K  :  V  F  H  K  R  M  P  P  E  A  I  D  L  A  S  R  L  L  Q  Y  S  P  S  L  R  C  T  A  :  L  E  A  C  A  H  S  F  F  D  E  L  R  E  P  N  A  R  L  P  N  G  R  P  F  P  P  L  F  N  F  K  Q  E  :  L  T  G  A  S  P  D  L  V  N  K  L  I  P  E  H  V  W  R  Q  L  G  L  N  F  P  F  P  G  A  T  *  L  Y  *  C  N  I  E  L  V  Y  Q  K  K  Y  I  G  S  P  C  G  L  M  *  P  C  I  L  A  *  P  V  A  M  H  A  C  K  S  C  M  H  I  A  A  V  W  L  T  R  S  D  P  V  S  T  C  V  L  F  *  L  I  A  D  L  L  P  L  L  Y  I  V  F  D  K  K  N  S  D  R  S  I  K  *  *  I  L  *  C  L  V  K  Q  I  S  L  R  D  L  L  E  H  *  D  L  *  L  W  V  V  V  I  F  I  C  K  L  F  L  A   </second_frame>
            <third_frame>   K  S  S  R  G  E  E  S  T  W  P  R  Y  R  W  D  L  S  T  I  I  R  R  K  I  T  I  T  T  T  F  S  R  R  R  S  S  C  S  S  S  S  N  S  L  *  I  V  N  *  E  E  E  E  E  L  Q  *  G  T  P  E  H  D  R  K  W  N  P  K  R :   K  C  Q  L  L  L  L  R  V  M  V  P  S  L  V  T  *  F  P  P  P  L  E  A  R  M  E  N  Q  K  G :   P  S  V  I  W  Q  S  E  L  S  V  Q  G  P  L  G  *  C  F  R :   Q  N  A  W  K  L  E  R  L  W  P  *  R  R  F  Y  R  T  N  G  I  K  I  V  N  Y  N  *  C  A  *  W  I  T  Q  M  S  L  L  *  S  T  A  S  F  P  R  L  V  E  M  S  F  F  L  I  W  S  W  I  M  S  L  K  V  Y  T  R  F  *  S  T  I  A  I  Q  I  K  G  C  H  S  Y  M  S  N  F  T  C  I  R :   Y  S  E  G  W  L  T  F  I  M  F  Q  G  F  A  I  E  M  *  N  L  K  I  F  W :   L  I  L  *  P  I  K  S  S  C  V  I  L  E  V  Q  K  S  W :   *  M  V  K  Q  I  F  H  T  F  A  L  A  T  T  E  L  Q  N  S  Y  L  V  P  Q  S  I  Q  H  Q  L  I  F  G  Q  Q  A  V  S  L  L  S  F  F  W  G  S :   R  S  F  L  A  K  M  Q  *  I  N  W  W  R  S  S  R :   S  L  V  L  L  L  G  K  K  F  D  V  *  T  Q  T  T  Q  I  S  D  S  H  R  *  K  L  I  L  G  T  R :   Y  S  I  K  E  C  L  L  K  Q  L  I  L  P  H  G  F  F  N  I  H  Q  V  F  A  V  L  H :   *  K  H  V  H  I  R  S  L  M  S  F  V  S  P  M  P  V  S  L  M  D  V  H  F  H  L  F  S  T  L  N  K  S :   *  L  E  L  H  L  I  W  S  T  S  *  S  L  S  M  C  G  G  N  L  V  *  I  S  H  F  L  V  R  R  N  C  T  N  V  I  *  S  W  C  I  R  K  N  I  *  G  V  L  V  D  *  C  N  H  A  F  W  R  N  Q  W  L  C  T  H  V  K  V  V  C  I  *  P  L  F  G  L  Q  E  V  I  L  S  L  L  V  S  S  F  S  *  *  Q  T  C  C  L  F  C  T  L  F  L  I  R  R  I  Q  I  G  V  *  S  D  K  Y  C  N  V  *  L  S  R  F  P  *  E  T  F  W  S  T  R  T  C  S  F  G  L  *  L  Y  L  Y  A  S  C  F  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64019" stop="64222"/>
                    <exon start="65122" stop="65214"/>
                    <exon start="65373" stop="65432"/>
                    <exon start="65508" stop="65780"/>
                    <exon start="65857" stop="65931"/>
                    <exon start="66008" stop="66064"/>
                    <exon start="66533" stop="66673"/>
                    <exon start="66775" stop="66825"/>
                    <exon start="66907" stop="67002"/>
                    <exon start="67136" stop="67219"/>
                    <exon start="67318" stop="67419"/>
                    <exon start="68357" stop="68452"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1329</number_coding_nucleotides>
                  <number_encoded_amino_acids>443</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRRREHMASIPLGPQHHNPPENHHHHHLQPPPQLVQQQQQQPVNRELGGGGGAAVRNAGARPEMESEKEMSAAVVEGNGAVTGHIISTTIGGKNGEPKRTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQLMRLMDHPNVITLKHCFFSTTSRDELFLNLVMDYVPESLYKVLKHYSNSNQRMPLIYVKLYMYQIFRGLAYIHNVPRICHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVNGEANISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHSFFDELREPNARLPNGRPFPPLFNFKQELTGASPDLVNKLIPEHVWRQLGLNFPFPGAT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="66816" e_stop="66825"/>
            <exon e_start="66907" e_stop="67002"/>
            <exon e_start="67136" e_stop="67219"/>
            <exon e_start="67318" e_stop="67419"/>
            <exon e_start="68357" e_stop="68462"/>
            <exon e_start="68666" e_stop="68814"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.051" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66816" e_stop="66825" e_length="10"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.051">
            <gDNA_intron_boundary i_start="66826" i_stop="66906" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66907" e_stop="67002" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.973">
            <gDNA_intron_boundary i_start="67003" i_stop="67135" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67136" e_stop="67219" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="67220" i_stop="67317" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67318" e_stop="67419" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67420" i_stop="68356" i_length="937"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68357" e_stop="68462" e_length="106"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68463" i_stop="68665" i_length="203"/>
          </intron>
          <exon e_serial="6" e_score="0.966">
            <gDNA_exon_boundary e_start="68666" e_stop="68814" e_length="149"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66816" stop="66825"/>
              <exon start="66907" stop="67002"/>
              <exon start="67136" stop="67219"/>
              <exon start="67318" stop="67419"/>
              <exon start="68357" stop="68462"/>
              <exon start="68666" stop="68814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336124" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCATCAAG : GTCCTTGGTACTCCTACTCGGGAAGAAATTCGATGTATGAACCCAAACTACACAGATTTCAGATTCCCACAGATAAAAGCTCATCCTTGGCACAAG : GTATTCCATAAAAGAATGCCTCCTGAAGCAATTGATCTTGCCTCACGGCTTCTTCAATATTCACCAAGTCTTCGCTGTACTGCA : CTAGAAGCATGTGCACATTCGTTCTTTGATGAGCTTCGTGAGCCCAATGCCCGTCTCCCTAATGGACGTCCATTTCCACCTCTTTTCAACTTTAAACAAGAG : TTAACTGGAGCTTCACCTGATTTGGTCAACAAGCTGATCCCTGAGCATGTGTGGAGGCAACTTGGTTTGAATTTCCCATTTCCTGGTGCGACGTAATTGTACTAAT : GTTTTTGATAAGAAGAATTCAGATAGGAGTATAAAGTGATAAATATTGTAATGTCTAGTTAAGCAGATTTCCTTGAGAGACCTTCTGGAGCACTAGGACTTGTAGCTTTGGGTTGTAGTTATATTTATATGCAAGTTGTTTTTAGCTCT</gDNA_template>
            <first_frame> D  H  Q   : G  P  W  Y  S  Y  S  G  R  N  S  M  Y  E  P  K  L  H  R  F  Q  I  P  T  D  K  S  S  S  L  A  Q   : G  I  P  *  K  N  A  S  *  S  N  *  S  C  L  T  A  S  S  I  F  T  K  S  S  L  Y  C   : T  R  S  M  C  T  F  V  L  *  *  A  S  *  A  Q  C  P  S  P  *  W  T  S  I  S  T  S  F  Q  L  *  T  R   : V  N  W  S  F  T  *  F  G  Q  Q  A  D  P  *  A  C  V  E  A  T  W  F  E  F  P  I  S  W  C  D  V  I  V  L  M :   F  L  I  R  R  I  Q  I  G  V  *  S  D  K  Y  C  N  V  *  L  S  R  F  P  *  E  T  F  W  S  T  R  T  C  S  F  G  L  *  L  Y  L  Y  A  S  C  F  *  L  </first_frame>
            <second_frame>  I  I  K  :  V  L  G  T  P  T  R  E  E  I  R  C  M  N  P  N  Y  T  D  F  R  F  P  Q  I  K  A  H  P  W  H  K  :  V  F  H  K  R  M  P  P  E  A  I  D  L  A  S  R  L  L  Q  Y  S  P  S  L  R  C  T  A  :  L  E  A  C  A  H  S  F  F  D  E  L  R  E  P  N  A  R  L  P  N  G  R  P  F  P  P  L  F  N  F  K  Q  E  :  L  T  G  A  S  P  D  L  V  N  K  L  I  P  E  H  V  W  R  Q  L  G  L  N  F  P  F  P  G  A  T  *  L  Y  *   : C  F  *  *  E  E  F  R  *  E  Y  K  V  I  N  I  V  M  S  S  *  A  D  F  L  E  R  P  S  G  A  L  G  L  V  A  L  G  C  S  Y  I  Y  M  Q  V  V  F  S  S </second_frame>
            <third_frame>   S  S  R :   S  L  V  L  L  L  G  K  K  F  D  V  *  T  Q  T  T  Q  I  S  D  S  H  R  *  K  L  I  L  G  T  R :   Y  S  I  K  E  C  L  L  K  Q  L  I  L  P  H  G  F  F  N  I  H  Q  V  F  A  V  L  H :   *  K  H  V  H  I  R  S  L  M  S  F  V  S  P  M  P  V  S  L  M  D  V  H  F  H  L  F  S  T  L  N  K  S :   *  L  E  L  H  L  I  W  S  T  S  *  S  L  S  M  C  G  G  N  L  V  *  I  S  H  F  L  V  R  R  N  C  T  N  :  V  F  D  K  K  N  S  D  R  S  I  K  *  *  I  L  *  C  L  V  K  Q  I  S  L  R  D  L  L  E  H  *  D  L  *  L  W  V  V  V  I  F  I  C  K  L  F  L  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66817" stop="66825"/>
                    <exon start="66907" stop="67002"/>
                    <exon start="67136" stop="67219"/>
                    <exon start="67318" stop="67419"/>
                    <exon start="68357" stop="68452"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHSFFDELREPNARLPNGRPFPPLFNFKQELTGASPDLVNKLIPEHVWRQLGLNFPFPGAT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="73852" PGL_stop="69524"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73852" e_stop="73563"/>
            <exon e_start="73201" e_stop="73116"/>
            <exon e_start="72010" e_stop="71804"/>
            <exon e_start="71680" e_stop="71575"/>
            <exon e_start="71460" e_stop="71356"/>
            <exon e_start="71285" e_stop="71113"/>
            <exon e_start="70550" e_stop="70391"/>
            <exon e_start="70289" e_stop="70194"/>
            <exon e_start="70099" e_stop="70005"/>
            <exon e_start="69892" e_stop="69524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.513" acc_prob="0.865" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73852" e_stop="73563" e_length="290"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="73562" i_stop="73202" i_length="361"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73201" e_stop="73116" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.975">
            <gDNA_intron_boundary i_start="73115" i_stop="72011" i_length="1105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72010" e_stop="71804" e_length="207"/>
          </exon>
          <intron i_serial="3" don_prob="0.513" acc_prob="0.865">
            <gDNA_intron_boundary i_start="71803" i_stop="71681" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71680" e_stop="71575" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.790">
            <gDNA_intron_boundary i_start="71574" i_stop="71461" i_length="114"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71460" e_stop="71356" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="71355" i_stop="71286" i_length="70"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71285" e_stop="71113" e_length="173"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.984">
            <gDNA_intron_boundary i_start="71112" i_stop="70551" i_length="562"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70550" e_stop="70391" e_length="160"/>
          </exon>
          <intron i_serial="7" don_prob="0.934" acc_prob="0.927">
            <gDNA_intron_boundary i_start="70390" i_stop="70290" i_length="101"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="70289" e_stop="70194" e_length="96"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.904">
            <gDNA_intron_boundary i_start="70193" i_stop="70100" i_length="94"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="70099" e_stop="70005" e_length="95"/>
          </exon>
          <intron i_serial="9" don_prob="0.970" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70004" i_stop="69893" i_length="112"/>
          </intron>
          <exon e_serial="10" e_score="0.984">
            <gDNA_exon_boundary e_start="69892" e_stop="69524" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73852" stop="73563"/>
              <exon start="73201" stop="73116"/>
              <exon start="72010" stop="71804"/>
              <exon start="71680" stop="71575"/>
              <exon start="71460" stop="71356"/>
              <exon start="71285" stop="71113"/>
              <exon start="70550" stop="70391"/>
              <exon start="70289" stop="70194"/>
              <exon start="70099" stop="70005"/>
              <exon start="69892" stop="69524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314712" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTACTCTTACGTCTCCTATTTATAAAGTCCCATCTCTATCAACCGCCTCTACAAACACGCCATTTTCCTCTCCTATTTGGCCATTTCTCTATATCCTCTCTCCGTTCCGGCCATGGCGATGCGTGCCGCTATTTCCGGTCGTCAACTAAAACTTAGCTCGTCGTCGTTCGGAGCGCGATCCCTGTCGTCGTGGTGGCGAAATGTTGAACCGGCTCCTAAAGATCCTATCCTCGGCGTAACTGAAGCTTTTCTCGCCGATCCTAGCCCTGACAAAGTCAATGTTGGCGTT : GGAGCTTACAGGGATGACAATGGAAAACCCGTGGTACTGGAGTGTGTTAGAGAAGCAGAGCGAAGGATAGCTGGTGGTTTCAATAT : GGAATATCTTCCTATGGGAGGTAGTGTCAACATGATCCAGGAGTCGCTGAAGTTAGCCTATGGAGAGAACTCAGACTTGATAAAAGATAAACGCATTGCTGCAATTCAAGCATTATCTGGAACAGGCGCATGCAGAATTTTTGCGGACTTCCAAAAGCGCTTTTGTCCTGATTCACAGATTTATATTCCTGTTCCTACATGGTCTAA : TCATCATAACATTTGGAGAGATGCTCACGTCCCTGAGAAAACATATCACTATTATCATGCTGAATCAAAGGGCTTGGACTTTGCTGCAATGATGGATGATATAAAG : AATGCCCCAAAAGGATCATTCTTTCTGCTTCATGCTTGTGCTCATAATCCTACTGGGGTGGATCCGACAGAGGAACAATGGAGGGAGATCTCGCACCAGTTCAAG : GTGAAGGGACATTTTGCTTTGTTTGACATGGCATATCAAGGATTTGCAAGTGGGTATCCAGAGAAGGATGCTAAAGCAATCAGGATATTTCTTGAGGATGGTCATCCGATAGCATGTGCCCAATCATATGCAAAAAATATGGGGCTATATGGTCAGAGAGTTGGTTGCCTAAG : TGTTGTCTGTGAGGATGAAAAACAAGCAGTGGCAGTGAAAAGTCAGTTGCAGCAACTTGCCAGGCCCATGTACAGTAATCCACCTCTTCATGGTGCTCTTGTTGTTTCTACAATCCTTGGAGATCCAAACTTGAAAACTCTATGGCTCGGGGAAGTGAAG : GGCATGGCTGATCGTATCATCGGGATGAGAACTGCTTTAAGGGGAAATCTTGAGAAGTTGGGCTCACCTCTATCTTGGGAACACATAACCAACCAG : ATTGGCATGTTCTGCTACAGTGGGATGACACCGGAACAAGTAGACCGATTGACAAAAGAGTATCACATCTACATGACTCGTAATGGTCGTATCAG : TATGGCAGGAGTTACTACTGGAAATGTTGGTTACTTGGCAAACGCTATTCATGAGGTTACTAAATCTGCTTAAGCGTTAACGTCATGGATTCAATAATCAGCTAAATAAAGGCTGTGGAAATTCATTTTTTGTGATCGGAAAGATCACAACATGTTGTAAACTTGTAATAGTTGAGTTAAAACTATCGTACGGAGGGGAGGGGTAATAAATAGAGCCATTTTAAGGTGTAGAAGTCATTAGCAACGTTGAGGTGGAGTTGTAGTTATTTTAGGGTACATTGCAGACATTAATCATCTCTGGTGTCAAGTAGCTCCTGTTTTTCATATACAACAGCGTAGTTACATGATATTTATGCCAGCATTTTGAAG</gDNA_template>
            <first_frame> T  T  L  T  S  P  I  Y  K  V  P  S  L  S  T  A  S  T  N  T  P  F  S  S  P  I  W  P  F  L  Y  I  L  S  P  F  R  P  W  R  C  V  P  L  F  P  V  V  N  *  N  L  A  R  R  R  S  E  R  D  P  C  R  R  G  G  E  M  L  N  R  L  L  K  I  L  S  S  A  *  L  K  L  F  S  P  I  L  A  L  T  K  S  M  L  A  L :   E  L  T  G  M  T  M  E  N  P  W  Y  W  S  V  L  E  K  Q  S  E  G  *  L  V  V  S  I   : W  N  I  F  L  W  E  V  V  S  T  *  S  R  S  R  *  S  *  P  M  E  R  T  Q  T  *  *  K  I  N  A  L  L  Q  F  K  H  Y  L  E  Q  A  H  A  E  F  L  R  T  S  K  S  A  F  V  L  I  H  R  F  I  F  L  F  L  H  G  L   : I  I  I  T  F  G  E  M  L  T  S  L  R  K  H  I  T  I  I  M  L  N  Q  R  A  W  T  L  L  Q  *  W  M  I  *  R :   M  P  Q  K  D  H  S  F  C  F  M  L  V  L  I  I  L  L  G  W  I  R  Q  R  N  N  G  G  R  S  R  T  S  S  R :   *  R  D  I  L  L  C  L  T  W  H  I  K  D  L  Q  V  G  I  Q  R  R  M  L  K  Q  S  G  Y  F  L  R  M  V  I  R  *  H  V  P  N  H  M  Q  K  I  W  G  Y  M  V  R  E  L  V  A  *   : V  L  S  V  R  M  K  N  K  Q  W  Q  *  K  V  S  C  S  N  L  P  G  P  C  T  V  I  H  L  F  M  V  L  L  L  F  L  Q  S  L  E  I  Q  T  *  K  L  Y  G  S  G  K  *  R :   A  W  L  I  V  S  S  G  *  E  L  L  *  G  E  I  L  R  S  W  A  H  L  Y  L  G  N  T  *  P  T  R :   L  A  C  S  A  T  V  G  *  H  R  N  K  *  T  D  *  Q  K  S  I  T  S  T  *  L  V  M  V  V  S   : V  W  Q  E  L  L  L  E  M  L  V  T  W  Q  T  L  F  M  R  L  L  N  L  L  K  R  *  R  H  G  F  N  N  Q  L  N  K  G  C  G  N  S  F  F  V  I  G  K  I  T  T  C  C  K  L  V  I  V  E  L  K  L  S  Y  G  G  E  G  *  *  I  E  P  F  *  G  V  E  V  I  S  N  V  E  V  E  L  *  L  F  *  G  T  L  Q  T  L  I  I  S  G  V  K  *  L  L  F  F  I  Y  N  S  V  V  T  *  Y  L  C  Q  H  F  E  </first_frame>
            <second_frame>  L  L  L  R  L  L  F  I  K  S  H  L  Y  Q  P  P  L  Q  T  R  H  F  P  L  L  F  G  H  F  S  I  S  S  L  R  S  G  H  G  D  A  C  R  Y  F  R  S  S  T  K  T  *  L  V  V  V  R  S  A  I  P  V  V  V  V  A  K  C  *  T  G  S  *  R  S  Y  P  R  R  N  *  S  F  S  R  R  S  *  P  *  Q  S  Q  C  W  R   : W  S  L  Q  G  *  Q  W  K  T  R  G  T  G  V  C  *  R  S  R  A  K  D  S  W  W  F  Q  Y  :  G  I  S  S  Y  G  R  *  C  Q  H  D  P  G  V  A  E  V  S  L  W  R  E  L  R  L  D  K  R  *  T  H  C  C  N  S  S  I  I  W  N  R  R  M  Q  N  F  C  G  L  P  K  A  L  L  S  *  F  T  D  L  Y  S  C  S  Y  M  V  *  :  S  S  *  H  L  E  R  C  S  R  P  *  E  N  I  S  L  L  S  C  *  I  K  G  L  G  L  C  C  N  D  G  *  Y  K   : E  C  P  K  R  I  I  L  S  A  S  C  L  C  S  *  S  Y  W  G  G  S  D  R  G  T  M  E  G  D  L  A  P  V  Q   : G  E  G  T  F  C  F  V  *  H  G  I  S  R  I  C  K  W  V  S  R  E  G  C  *  S  N  Q  D  I  S  *  G  W  S  S  D  S  M  C  P  I  I  C  K  K  Y  G  A  I  W  S  E  S  W  L  P  K  :  C  C  L  *  G  *  K  T  S  S  G  S  E  K  S  V  A  A  T  C  Q  A  H  V  Q  *  S  T  S  S  W  C  S  C  C  F  Y  N  P  W  R  S  K  L  E  N  S  M  A  R  G  S  E   : G  H  G  *  S  Y  H  R  D  E  N  C  F  K  G  K  S  *  E  V  G  L  T  S  I  L  G  T  H  N  Q  P   : D  W  H  V  L  L  Q  W  D  D  T  G  T  S  R  P  I  D  K  R  V  S  H  L  H  D  S  *  W  S  Y  Q  :  Y  G  R  S  Y  Y  W  K  C  W  L  L  G  K  R  Y  S  *  G  Y  *  I  C  L  S  V  N  V  M  D  S  I  I  S  *  I  K  A  V  E  I  H  F  L  *  S  E  R  S  Q  H  V  V  N  L  *  *  L  S  *  N  Y  R  T  E  G  R  G  N  K  *  S  H  F  K  V  *  K  S  L  A  T  L  R  W  S  C  S  Y  F  R  V  H  C  R  H  *  S  S  L  V  S  S  S  S  C  F  S  Y  T  T  A  *  L  H  D  I  Y  A  S  I  L  K </second_frame>
            <third_frame>   Y  S  Y  V  S  Y  L  *  S  P  I  S  I  N  R  L  Y  K  H  A  I  F  L  S  Y  L  A  I  S  L  Y  P  L  S  V  P  A  M  A  M  R  A  A  I  S  G  R  Q  L  K  L  S  S  S  S  F  G  A  R  S  L  S  S  W  W  R  N  V  E  P  A  P  K  D  P  I  L  G  V  T  E  A  F  L  A  D  P  S  P  D  K  V  N  V  G  V  :  G  A  Y  R  D  D  N  G  K  P  V  V  L  E  C  V  R  E  A  E  R  R  I  A  G  G  F  N  M :   E  Y  L  P  M  G  G  S  V  N  M  I  Q  E  S  L  K  L  A  Y  G  E  N  S  D  L  I  K  D  K  R  I  A  A  I  Q  A  L  S  G  T  G  A  C  R  I  F  A  D  F  Q  K  R  F  C  P  D  S  Q  I  Y  I  P  V  P  T  W  S  N :   H  H  N  I  W  R  D  A  H  V  P  E  K  T  Y  H  Y  Y  H  A  E  S  K  G  L  D  F  A  A  M  M  D  D  I  K  :  N  A  P  K  G  S  F  F  L  L  H  A  C  A  H  N  P  T  G  V  D  P  T  E  E  Q  W  R  E  I  S  H  Q  F  K  :  V  K  G  H  F  A  L  F  D  M  A  Y  Q  G  F  A  S  G  Y  P  E  K  D  A  K  A  I  R  I  F  L  E  D  G  H  P  I  A  C  A  Q  S  Y  A  K  N  M  G  L  Y  G  Q  R  V  G  C  L  S :   V  V  C  E  D  E  K  Q  A  V  A  V  K  S  Q  L  Q  Q  L  A  R  P  M  Y  S  N  P  P  L  H  G  A  L  V  V  S  T  I  L  G  D  P  N  L  K  T  L  W  L  G  E  V  K  :  G  M  A  D  R  I  I  G  M  R  T  A  L  R  G  N  L  E  K  L  G  S  P  L  S  W  E  H  I  T  N  Q  :  I  G  M  F  C  Y  S  G  M  T  P  E  Q  V  D  R  L  T  K  E  Y  H  I  Y  M  T  R  N  G  R  I  S :   M  A  G  V  T  T  G  N  V  G  Y  L  A  N  A  I  H  E  V  T  K  S  A  *  A  L  T  S  W  I  Q  *  S  A  K  *  R  L  W  K  F  I  F  C  D  R  K  D  H  N  M  L  *  T  C  N  S  *  V  K  T  I  V  R  R  G  G  V  I  N  R  A  I  L  R  C  R  S  H  *  Q  R  *  G  G  V  V  V  I  L  G  Y  I  A  D  I  N  H  L  W  C  Q  V  A  P  V  F  H  I  Q  Q  R  S  Y  M  I  F  M  P  A  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73826" stop="73563"/>
                    <exon start="73201" stop="73116"/>
                    <exon start="72010" stop="71804"/>
                    <exon start="71680" stop="71575"/>
                    <exon start="71460" stop="71356"/>
                    <exon start="71285" stop="71113"/>
                    <exon start="70550" stop="70391"/>
                    <exon start="70289" stop="70194"/>
                    <exon start="70099" stop="70005"/>
                    <exon start="69892" stop="69820"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1362</number_coding_nucleotides>
                  <number_encoded_amino_acids>454</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPISINRLYKHAIFLSYLAISLYPLSVPAMAMRAAISGRQLKLSSSSFGARSLSSWWRNVEPAPKDPILGVTEAFLADPSPDKVNVGVGAYRDDNGKPVVLECVREAERRIAGGFNMEYLPMGGSVNMIQESLKLAYGENSDLIKDKRIAAIQALSGTGACRIFADFQKRFCPDSQIYIPVPTWSNHHNIWRDAHVPEKTYHYYHAESKGLDFAAMMDDIKNAPKGSFFLLHACAHNPTGVDPTEEQWREISHQFKVKGHFALFDMAYQGFASGYPEKDAKAIRIFLEDGHPIACAQSYAKNMGLYGQRVGCLSVVCEDEKQAVAVKSQLQQLARPMYSNPPLHGALVVSTILGDPNLKTLWLGEVKGMADRIIGMRTALRGNLEKLGSPLSWEHITNQIGMFCYSGMTPEQVDRLTKEYHIYMTRNGRISMAGVTTGNVGYLANAIHEVTKSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="82124" PGL_stop="78816"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82124" e_stop="81912"/>
            <exon e_start="81510" e_stop="81446"/>
            <exon e_start="81360" e_stop="80742"/>
            <exon e_start="79825" e_stop="79680"/>
            <exon e_start="79565" e_stop="79467"/>
            <exon e_start="79070" e_stop="78816"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.979" e_score="0.991"/>
          <exon-intron don_prob="0.790" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.039" e_score="1.000"/>
          <exon-intron don_prob="0.735" acc_prob="0.459" e_score="1.000"/>
          <exon-intron don_prob="0.227" acc_prob="0.408" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="82124" e_stop="81912" e_length="213"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.979">
            <gDNA_intron_boundary i_start="81911" i_stop="81511" i_length="401"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81510" e_stop="81446" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.790" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81445" i_stop="81361" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81360" e_stop="80742" e_length="619"/>
          </exon>
          <intron i_serial="3" don_prob="0.939" acc_prob="0.039">
            <gDNA_intron_boundary i_start="80741" i_stop="79826" i_length="916"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79825" e_stop="79680" e_length="146"/>
          </exon>
          <intron i_serial="4" don_prob="0.735" acc_prob="0.459">
            <gDNA_intron_boundary i_start="79679" i_stop="79566" i_length="114"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79565" e_stop="79467" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.227" acc_prob="0.408">
            <gDNA_intron_boundary i_start="79466" i_stop="79071" i_length="396"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79070" e_stop="78816" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82124" stop="81912"/>
              <exon start="81510" stop="81446"/>
              <exon start="81360" stop="80821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80831" stop="80742"/>
              <exon start="79825" stop="79680"/>
              <exon start="79565" stop="79467"/>
              <exon start="79070" stop="78816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328634" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGACATGCTGTTGAAACTGTGAAAAGTTATTACAACAATAACAACAACATATACCTAATGGGGTCCGGGCAGGGTAGAGTGTATGCAAACCTTACCCCTACCTCATGGAGGTAGAGAGGAGGTTTCCGGAAGACCCTCGGATCAAGACTTATTATGCGGAAGTAAATGCATTCTTTATTACAGATGCGAAACAATTAGGTGGGCCAAAACT : ACTTTAATGCGGTTGCGCTATGGGTTACTACTTGAACAGAAGTTTGCCTATTGAAGCTTGAAGTT : GGGACTGAGCAATTCAAAGATTTGGGACAAGTAAGATAGCTTCCAAAGCTTCTTCTATCAATTGCCATGAACTTAGTATGGTGAGTTTAAATTTATATTTTCTTTCTCGTTCACTTAGTTGAGCTTTCCTTGGTAGGAAAAGAAAGGACATTTATTTCTCTCAGATTTTGTTACTATATAGTAATTCTCCTTGACACCTGACATTTTGTGAATTTTCTCGGTAAGATAGCACTTTGCTATCTTGATTTGAGAAACTTATACACCTTGGAGTAAGCAAGTGTACAAGTAGAAGTTACAATTTTTTTCCATATCAGGAAAGGAATTAGCAGCTAAATACAGTTAAAAGGGTCAGGTGTAATTTCCGCCTTCTTTTGTATTGCAATTTGCATGTCCTTTCCAAGCCAATGACTGAGTTTAGTAGTATTATATCAAAGCTTTTACATCCACTTACTCTCTAAGTTGATTCTTACATGCAACTTTGTCCTTAAATTTGCAAGAATGACAGTATTTGAGATTGAAAAGATTCAATAACACCAGGAAAGCCCAAGGCTTTAAGAAAAAGTAGTGGGTTGGATCCACTTCAGTCACATTCCGTAGCAGCTTGCTGGCGTCCTTTCAG : AATGATCGTTAGAATGAGTCATTCTAAGGCCATTTTTATATCTAAATGGAAGGGATTATTGGTATTAATCATAGAGAAATTCATCCGAGGATGACTTAACTGAGATGACTCATCCTATCAGGCACAAATCAAACATGCACTTTGAG : TTCTAATAGACTCCTCTGAATCCAAGTGAAACCTAAGAGCTGTCAATGAAGCAGATTAAACAAATGAAGAGAGATGCTAGACTCCAGCCAGACCAAGAG : GAAAAATTATGCAATTCATATATATGAATTGTTGCGGAAGGTGCATCAAGTTGGCTGTGTTGAAAATGACTGGAAGATTTCTGCCCATAATATATCGATGTGAATGACCACATCATGAGATTTGACTTTTGTCATACCAAAAACAGCTGTGAAACATTTCATTTGGTATGGCAAAATGAGTATAATTGACTAACAGTATTGTTCTATGTATTACAACATGAACAGAGAAATTTGAGAGTGTATTTTTGTTATGGC</gDNA_template>
            <first_frame> D  D  M  L  L  K  L  *  K  V  I  T  T  I  T  T  T  Y  T  *  W  G  P  G  R  V  E  C  M  Q  T  L  P  L  P  H  G  G  R  E  E  V  S  G  R  P  S  D  Q  D  L  L  C  G  S  K  C  I  L  Y  Y  R  C  E  T  I  R  W  A  K  T  :  T  L  M  R  L  R  Y  G  L  L  L  E  Q  K  F  A  Y  *  S  L  K  L :   G  L  S  N  S  K  I  W  D  K  *  D  S  F  Q  S  F  F  Y  Q  L  P  *  T  *  Y  G  E  F  K  F  I  F  S  F  S  F  T  *  L  S  F  P  W  *  E  K  K  G  H  L  F  L  S  D  F  V  T  I  *  *  F  S  L  T  P  D  I  L  *  I  F  S  V  R  *  H  F  A  I  L  I  *  E  T  Y  T  P  W  S  K  Q  V  Y  K  *  K  L  Q  F  F  S  I  S  G  K  E  L  A  A  K  Y  S  *  K  G  Q  V  *  F  P  P  S  F  V  L  Q  F  A  C  P  F  Q  A  N  D  *  V  *  *  Y  Y  I  K  A  F  T  S  T  Y  S  L  S  *  F  L  H  A  T  L  S  L  N  L  Q  E  *  Q  Y  L  R  L  K  R  F  N  N  T  R  K  A  Q  G  F  K  K  K  *  W  V  G  S  T  S  V  T  F  R  S  S  L  L  A  S  F  Q  :  N  D  R  *  N  E  S  F  *  G  H  F  Y  I  *  M  E  G  I  I  G  I  N  H  R  E  I  H  P  R  M  T  *  L  R  *  L  I  L  S  G  T  N  Q  T  C  T  L  S :   S  N  R  L  L  *  I  Q  V  K  P  K  S  C  Q  *  S  R  L  N  K  *  R  E  M  L  D  S  S  Q  T  K  R :   K  N  Y  A  I  H  I  Y  E  L  L  R  K  V  H  Q  V  G  C  V  E  N  D  W  K  I  S  A  H  N  I  S  M  *  M  T  T  S  *  D  L  T  F  V  I  P  K  T  A  V  K  H  F  I  W  Y  G  K  M  S  I  I  D  *  Q  Y  C  S  M  Y  Y  N  M  N  R  E  I  *  E  C  I  F  V  M   </first_frame>
            <second_frame>  M  T  C  C  *  N  C  E  K  L  L  Q  Q  *  Q  Q  H  I  P  N  G  V  R  A  G  *  S  V  C  K  P  Y  P  Y  L  M  E  V  E  R  R  F  P  E  D  P  R  I  K  T  Y  Y  A  E  V  N  A  F  F  I  T  D  A  K  Q  L  G  G  P  K  L :   L  *  C  G  C  A  M  G  Y  Y  L  N  R  S  L  P  I  E  A  *  S   : W  D  *  A  I  Q  R  F  G  T  S  K  I  A  S  K  A  S  S  I  N  C  H  E  L  S  M  V  S  L  N  L  Y  F  L  S  R  S  L  S  *  A  F  L  G  R  K  R  K  D  I  Y  F  S  Q  I  L  L  L  Y  S  N  S  P  *  H  L  T  F  C  E  F  S  R  *  D  S  T  L  L  S  *  F  E  K  L  I  H  L  G  V  S  K  C  T  S  R  S  Y  N  F  F  P  Y  Q  E  R  N  *  Q  L  N  T  V  K  R  V  R  C  N  F  R  L  L  L  Y  C  N  L  H  V  L  S  K  P  M  T  E  F  S  S  I  I  S  K  L  L  H  P  L  T  L  *  V  D  S  Y  M  Q  L  C  P  *  I  C  K  N  D  S  I  *  D  *  K  D  S  I  T  P  G  K  P  K  A  L  R  K  S  S  G  L  D  P  L  Q  S  H  S  V  A  A  C  W  R  P  F  R :   M  I  V  R  M  S  H  S  K  A  I  F  I  S  K  W  K  G  L  L  V  L  I  I  E  K  F  I  R  G  *  L  N  *  D  D  S  S  Y  Q  A  Q  I  K  H  A  L  *   : V  L  I  D  S  S  E  S  K  *  N  L  R  A  V  N  E  A  D  *  T  N  E  E  R  C  *  T  P  A  R  P  R   : G  K  I  M  Q  F  I  Y  M  N  C  C  G  R  C  I  K  L  A  V  L  K  M  T  G  R  F  L  P  I  I  Y  R  C  E  *  P  H  H  E  I  *  L  L  S  Y  Q  K  Q  L  *  N  I  S  F  G  M  A  K  *  V  *  L  T  N  S  I  V  L  C  I  T  T  *  T  E  K  F  E  S  V  F  L  L  W  </second_frame>
            <third_frame>   *  H  A  V  E  T  V  K  S  Y  Y  N  N  N  N  N  I  Y  L  M  G  S  G  Q  G  R  V  Y  A  N  L  T  P  T  S  W  R  *  R  G  G  F  R  K  T  L  G  S  R  L  I  M  R  K  *  M  H  S  L  L  Q  M  R  N  N  *  V  G  Q  N   : Y  F  N  A  V  A  L  W  V  T  T  *  T  E  V  C  L  L  K  L  E  V  :  G  T  E  Q  F  K  D  L  G  Q  V  R  *  L  P  K  L  L  L  S  I  A  M  N  L  V  W  *  V  *  I  Y  I  F  F  L  V  H  L  V  E  L  S  L  V  G  K  E  R  T  F  I  S  L  R  F  C  Y  Y  I  V  I  L  L  D  T  *  H  F  V  N  F  L  G  K  I  A  L  C  Y  L  D  L  R  N  L  Y  T  L  E  *  A  S  V  Q  V  E  V  T  I  F  F  H  I  R  K  G  I  S  S  *  I  Q  L  K  G  S  G  V  I  S  A  F  F  C  I  A  I  C  M  S  F  P  S  Q  *  L  S  L  V  V  L  Y  Q  S  F  Y  I  H  L  L  S  K  L  I  L  T  C  N  F  V  L  K  F  A  R  M  T  V  F  E  I  E  K  I  Q  *  H  Q  E  S  P  R  L  *  E  K  V  V  G  W  I  H  F  S  H  I  P  *  Q  L  A  G  V  L  S   : E  *  S  L  E  *  V  I  L  R  P  F  L  Y  L  N  G  R  D  Y  W  Y  *  S  *  R  N  S  S  E  D  D  L  T  E  M  T  H  P  I  R  H  K  S  N  M  H  F  E  :  F  *  *  T  P  L  N  P  S  E  T  *  E  L  S  M  K  Q  I  K  Q  M  K  R  D  A  R  L  Q  P  D  Q  E  :  E  K  L  C  N  S  Y  I  *  I  V  A  E  G  A  S  S  W  L  C  *  K  *  L  E  D  F  C  P  *  Y  I  D  V  N  D  H  I  M  R  F  D  F  C  H  T  K  N  S  C  E  T  F  H  L  V  W  Q  N  E  Y  N  *  L  T  V  L  F  Y  V  L  Q  H  E  Q  R  N  L  R  V  Y  F  C  Y  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82064" stop="81912"/>
                    <exon start="81510" stop="81457"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WGPGRVECMQTLPLPHGGREEVSGRPSDQDLLCGSKCILYYRCETIRWAKTTLMRLRYGLLLEQKFAY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80842" stop="80742"/>
                    <exon start="79825" stop="79732"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDSITPGKPKALRKSSGLDPLQSHSVAACWRPFRMIVRMSHSKAIFISKWKGLLVLIIEKFIRG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="86203" PGL_stop="88543"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86203" e_stop="86255"/>
            <exon e_start="86352" e_stop="86459"/>
            <exon e_start="86553" e_stop="86595"/>
            <exon e_start="87474" e_stop="87669"/>
            <exon e_start="88020" e_stop="88543"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86203" e_stop="86255" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.913">
            <gDNA_intron_boundary i_start="86256" i_stop="86351" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86352" e_stop="86459" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="86460" i_stop="86552" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86553" e_stop="86595" e_length="43"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.883">
            <gDNA_intron_boundary i_start="86596" i_stop="87473" i_length="878"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87474" e_stop="87669" e_length="196"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87670" i_stop="88019" i_length="350"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="88020" e_stop="88543" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86203" stop="86255"/>
              <exon start="86352" stop="86459"/>
              <exon start="86553" stop="86595"/>
              <exon start="87474" stop="87669"/>
              <exon start="88020" stop="88543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312892" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCAGTATTCTTCAACTCACTTGCTGCTGCTGCTGCAATTTCGTCCAGCAATG : GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAG : GTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAG : CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA : GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGTTGAGAACCAGCTTAGCAAGTTTATGCATTTTGTAGACTGATGTCTATATCACTCCTAGAGGGAAGTTTTGGGGAATTTCTATTAGTTGGTGTATGAGGGAGGATGTGTTAGTTCCCATTTTGTCTATCAGATGAACTCAAATCTTTTTTTTTTTTGTGTTGCAATCATAGTAGAACCATTAATCTAGCATCACAAGAGATGTTACGAATACCTAATTGGTTTCAATTGTGGTGATGAATGGTGTTGTTTTCAACATTTTTTTTCAAATTGTATTTGGGTGTTGGATGTTCCATCTTTGGCATGAAGTGCAATTATGCAACCCA</gDNA_template>
            <first_frame> L  S  I  L  Q  L  T  C  C  C  C  C  N  F  V  Q  Q  W :   L  Q  R  R  N  *  A  T  P  *  G  T  S  R  F  R  S  L  S  S  I  S  P  S  V  R  V  E  I  G  L  Q  E  Q  Q  R :   S  W  S  N  L  A  A  N  H  L  F  S  P  K  :  Q  G  I  L  C  G  P  L  V  S  G  V  M  K  K  *  L  A  T  *  L  S  E  V  R  K  L  C  S  C  L  R  V  D  *  K  L  R  N  M  S  C  *  E  G  T  S  V  K  P  A  A  L  G  L  V  F  R  S  T  L  I  L  E  L   : S  M  T  L  Q  L  V  F  M  V  W  I  S  M  L  S  W  S  V  L  D  T  V  L  L  V  A  A  G  A  S  L  V  S  G  S  S  T  G  S  Q  R  R  I  Q  *  S  G  S  R  S  N  M  K  V  L  S  L  T  S  P  Q  T  F  S  D  K  L  R  T  S  L  A  S  L  C  I  L  *  T  D  V  Y  I  T  P  R  G  K  F  W  G  I  S  I  S  W  C  M  R  E  D  V  L  V  P  I  L  S  I  R  *  T  Q  I  F  F  F  F  V  L  Q  S  *  *  N  H  *  S  S  I  T  R  D  V  T  N  T  *  L  V  S  I  V  V  M  N  G  V  V  F  N  I  F  F  Q  I  V  F  G  C  W  M  F  H  L  W  H  E  V  Q  L  C  N  P </first_frame>
            <second_frame>  S  V  F  F  N  S  L  A  A  A  A  A  I  S  S  S  N   : G  F  R  E  E  I  E  Q  P  H  E  G  H  Q  G  S  E  A  C  P  Q  Y  L  R  R  *  E  W  R  S  A  Y  K  S  S  K   : G  L  G  A  T  *  R  P  I  T  C  F  L  Q  S :   K  V  Y  C  A  V  L  W  Y  Q  A  *  *  K  N  S  L  L  R  D  C  Q  R  *  E  S  Y  A  A  A  *  E  W  T  E  S  *  G  I  *  V  V  E  K  E  L  Q  *  N  R  L  L  W  V  W  Y  S  G  A  H  *  S  W  N  *  :  V  *  P  F  N  W  Y  L  W  Y  G  F  L  C  C  L  G  A  S  W  I  P  C  C  S  S  P  Q  V  Q  V  S  C  R  D  P  A  Q  G  H  K  G  G  F  N  E  V  V  P  G  Q  I  *  R  C  Y  P  *  Q  V  L  K  H  S  V  I  S  *  E  P  A  *  Q  V  Y  A  F  C  R  L  M  S  I  S  L  L  E  G  S  F  G  E  F  L  L  V  G  V  *  G  R  M  C  *  F  P  F  C  L  S  D  E  L  K  S  F  F  F  L  C  C  N  H  S  R  T  I  N  L  A  S  Q  E  M  L  R  I  P  N  W  F  Q  L  W  *  *  M  V  L  F  S  T  F  F  F  K  L  Y  L  G  V  G  C  S  I  F  G  M  K  C  N  Y  A  T   </second_frame>
            <third_frame>   Q  Y  S  S  T  H  L  L  L  L  L  Q  F  R  P  A  M  :  A  S  E  K  K  L  S  N  P  M  R  D  I  K  V  Q  K  L  V  L  N  I  S  V  G  E  S  G  D  R  L  T  R  A  A  K  :  V  L  E  Q  L  S  G  Q  S  P  V  F  S  K   : A  R  Y  T  V  R  S  F  G  I  R  R  N  E  K  I  A  C  Y  V  T  V  R  G  E  K  A  M  Q  L  L  E  S  G  L  K  V  K  E  Y  E  L  L  R  R  N  F  S  E  T  G  C  F  G  F  G  I  Q  E  H  I  D  L  G  I  K :   Y  D  P  S  T  G  I  Y  G  M  D  F  Y  V  V  L  E  R  P  G  Y  R  V  A  R  R  R  R  C  K  S  R  V  G  I  Q  H  R  V  T  K  E  D  S  M  K  W  F  Q  V  K  Y  E  G  V  I  L  N  K  S  S  N  I  Q  *  *  V  E  N  Q  L  S  K  F  M  H  F  V  D  *  C  L  Y  H  S  *  R  E  V  L  G  N  F  Y  *  L  V  Y  E  G  G  C  V  S  S  H  F  V  Y  Q  M  N  S  N  L  F  F  F  C  V  A  I  I  V  E  P  L  I  *  H  H  K  R  C  Y  E  Y  L  I  G  F  N  C  G  D  E  W  C  C  F  Q  H  F  F  S  N  C  I  W  V  L  D  V  P  S  L  A  *  S  A  I  M  Q  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86205" stop="86255"/>
                    <exon start="86352" stop="86459"/>
                    <exon start="86553" stop="86595"/>
                    <exon start="87474" stop="87669"/>
                    <exon start="88020" stop="88215"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYSSTHLLLLLQFRPAMASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSSNIQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="94294" PGL_stop="92859"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94294" e_stop="93971"/>
            <exon e_start="93865" e_stop="93761"/>
            <exon e_start="93346" e_stop="92997"/>
            <exon e_start="92886" e_stop="92859"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.992" e_score="0.969"/>
          <exon-intron don_prob="0.952" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.941" e_score="0.991"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="94294" e_stop="93971" e_length="324"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.992">
            <gDNA_intron_boundary i_start="93970" i_stop="93866" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93865" e_stop="93761" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93760" i_stop="93347" i_length="414"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="93346" e_stop="92997" e_length="350"/>
          </exon>
          <intron i_serial="3" don_prob="0.864" acc_prob="0.941">
            <gDNA_intron_boundary i_start="92996" i_stop="92887" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="0.500">
            <gDNA_exon_boundary e_start="92886" e_stop="92859" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94294" stop="93971"/>
              <exon start="93865" stop="93761"/>
              <exon start="93346" stop="92997"/>
              <exon start="92886" stop="92859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333125" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAAAACCCCTTTCCACTTTTCTTCTTCCAAAAAATCGAACCAGATCGATCGAGCGATGTGGAATAATCGACGTCCGCCGGAAAATGGCTCCGGTAATGAGGAAGACAACTCCGATCAGGAGAAAACTATAGCAAAGGCAGCTGGTTTCGTGGTCGTTTCGGGAATCGCGATGAGCATTCTCAAAGCACTCAATCCATTCAACCATCAAAACATCAACAGTAAAACCAGTGAAGTAAAGGCAATAGTTTTCGAGTCAGCTCCATCTCAAACTCAGCCTCAAGTGCTTCAACAATGCCAACCAGAGCCTGAGCTCATAGTCAAG : AAACCAAATTGTTGCGTGGAGAAAAGAGAGAAGAAGGAAGTTTCACCAAATGTGATAGAGATTGAGCGGGGAGACACTCTTTGGGGACTCTCTAGAAAATATGGG : GTGTCAATCGAGGAAATTAAGGACGCTAACGGGCTTGAAGGGGACACCATCTATGCTGGGAAGAAACTTGTAATACCCTAACGTGCTCAATCTTGTTGATTCTTGTTGTTGTATTGTTGGTTATCCTGTGAGGTTTGTATTGTTTTTTTCGTTGAACTATTGGGTATGTTGTATTAGGGGAGAGATTTTGTAGTTTGAAACGAACGGTATGGCTGGTACGAGAGATAGGGATGTGAGATTGGTTTGAGCTAATGTAAAATGGAAAATTTTAGCTGCTATGATGAACTTGTATCTCGTCTCGCAATATTCTATCATGTAGAAGAAATGATGATTCTCCAAATTCTCTATCG : AAGTAAGGGAAATGTTGAAAGCAACAAG</gDNA_template>
            <first_frame> P  K  T  P  F  H  F  S  S  S  K  K  S  N  Q  I  D  R  A  M  W  N  N  R  R  P  P  E  N  G  S  G  N  E  E  D  N  S  D  Q  E  K  T  I  A  K  A  A  G  F  V  V  V  S  G  I  A  M  S  I  L  K  A  L  N  P  F  N  H  Q  N  I  N  S  K  T  S  E  V  K  A  I  V  F  E  S  A  P  S  Q  T  Q  P  Q  V  L  Q  Q  C  Q  P  E  P  E  L  I  V  K  :  K  P  N  C  C  V  E  K  R  E  K  K  E  V  S  P  N  V  I  E  I  E  R  G  D  T  L  W  G  L  S  R  K  Y  G  :  V  S  I  E  E  I  K  D  A  N  G  L  E  G  D  T  I  Y  A  G  K  K  L  V  I  P  *  R  A  Q  S  C  *  F  L  L  L  Y  C  W  L  S  C  E  V  C  I  V  F  F  V  E  L  L  G  M  L  Y  *  G  R  D  F  V  V  *  N  E  R  Y  G  W  Y  E  R  *  G  C  E  I  G  L  S  *  C  K  M  E  N  F  S  C  Y  D  E  L  V  S  R  L  A  I  F  Y  H  V  E  E  M  M  I  L  Q  I  L  Y  R :   S  K  G  N  V  E  S  N  K </first_frame>
            <second_frame>  L  K  P  L  S  T  F  L  L  P  K  N  R  T  R  S  I  E  R  C  G  I  I  D  V  R  R  K  M  A  P  V  M  R  K  T  T  P  I  R  R  K  L  *  Q  R  Q  L  V  S  W  S  F  R  E  S  R  *  A  F  S  K  H  S  I  H  S  T  I  K  T  S  T  V  K  P  V  K  *  R  Q  *  F  S  S  Q  L  H  L  K  L  S  L  K  C  F  N  N  A  N  Q  S  L  S  S  *  S  R :   N  Q  I  V  A  W  R  K  E  R  R  R  K  F  H  Q  M  *  *  R  L  S  G  E  T  L  F  G  D  S  L  E  N  M  G :   C  Q  S  R  K  L  R  T  L  T  G  L  K  G  T  P  S  M  L  G  R  N  L  *  Y  P  N  V  L  N  L  V  D  S  C  C  C  I  V  G  Y  P  V  R  F  V  L  F  F  S  L  N  Y  W  V  C  C  I  R  G  E  I  L  *  F  E  T  N  G  M  A  G  T  R  D  R  D  V  R  L  V  *  A  N  V  K  W  K  I  L  A  A  M  M  N  L  Y  L  V  S  Q  Y  S  I  M  *  K  K  *  *  F  S  K  F  S  I   : E  V  R  E  M  L  K  A  T   </second_frame>
            <third_frame>   *  N  P  F  P  L  F  F  F  Q  K  I  E  P  D  R  S  S  D  V  E  *  S  T  S  A  G  K  W  L  R  *  *  G  R  Q  L  R  S  G  E  N  Y  S  K  G  S  W  F  R  G  R  F  G  N  R  D  E  H  S  Q  S  T  Q  S  I  Q  P  S  K  H  Q  Q  *  N  Q  *  S  K  G  N  S  F  R  V  S  S  I  S  N  S  A  S  S  A  S  T  M  P  T  R  A  *  A  H  S  Q   : E  T  K  L  L  R  G  E  K  R  E  E  G  S  F  T  K  C  D  R  D  *  A  G  R  H  S  L  G  T  L  *  K  I  W   : G  V  N  R  G  N  *  G  R  *  R  A  *  R  G  H  H  L  C  W  E  E  T  C  N  T  L  T  C  S  I  L  L  I  L  V  V  V  L  L  V  I  L  *  G  L  Y  C  F  F  R  *  T  I  G  Y  V  V  L  G  E  R  F  C  S  L  K  R  T  V  W  L  V  R  E  I  G  M  *  D  W  F  E  L  M  *  N  G  K  F  *  L  L  *  *  T  C  I  S  S  R  N  I  L  S  C  R  R  N  D  D  S  P  N  S  L  S  :  K  *  G  K  C  *  K  Q  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94294" stop="93971"/>
                    <exon start="93865" stop="93761"/>
                    <exon start="93346" stop="93266"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKTPFHFSSSKKSNQIDRAMWNNRRPPENGSGNEEDNSDQEKTIAKAAGFVVVSGIAMSILKALNPFNHQNINSKTSEVKAIVFESAPSQTQPQVLQQCQPEPELIVKKPNCCVEKREKKEVSPNVIEIERGDTLWGLSRKYGVSIEEIKDANGLEGDTIYAGKKLVIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="99711" PGL_stop="99201"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99711" e_stop="99201"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99711" e_stop="99201" e_length="511"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99711" stop="99201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333424" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGGTCACCAAAGGTTTAGTTGCAGAAAAAGTCTTTACATCTTTAGCGGAGAAAGGAAAACTGGCGGATTTTGTGCTTTGCATTGGTGATGATAGATCAGATGAAGATATGTTTGAAATCATTGGCGATGCTTTGTCCAGAAATATTATTTCATATGATGCCAAGGTATTTGCTTGCACAGTTGGACAAAAACCTAGCAAAGCAAAGTATTACTTGGATGACACATCTGAGGTGGTGCTTATGCTAGACTCCCTTGCTGATGCCACTGATACTCCAGTGACTTCTGATGACGATGAACCTGCGGACTCCGACTGAATGTAGCTACCAGATGTTTTGTTTGCTTCGGTTACCTTCTCTATTGAATGTATATTCCAGGTCTGAAGATGGCACATTGTCCATTTGAGTTCGGTTTCGAGGTTTAAGACGGTGGAATCTCAAATTCTGTTCAATCATTCTTTCCTTTCTGATTGTTCTATTCTTTTATCATTAGCCTGTATGTAATATATCTCTG</gDNA_template>
            <first_frame> G  V  T  K  G  L  V  A  E  K  V  F  T  S  L  A  E  K  G  K  L  A  D  F  V  L  C  I  G  D  D  R  S  D  E  D  M  F  E  I  I  G  D  A  L  S  R  N  I  I  S  Y  D  A  K  V  F  A  C  T  V  G  Q  K  P  S  K  A  K  Y  Y  L  D  D  T  S  E  V  V  L  M  L  D  S  L  A  D  A  T  D  T  P  V  T  S  D  D  D  E  P  A  D  S  D  *  M  *  L  P  D  V  L  F  A  S  V  T  F  S  I  E  C  I  F  Q  V  *  R  W  H  I  V  H  L  S  S  V  S  R  F  K  T  V  E  S  Q  I  L  F  N  H  S  F  L  S  D  C  S  I  L  L  S  L  A  C  M  *  Y  I  S  </first_frame>
            <second_frame>  G  S  P  K  V  *  L  Q  K  K  S  L  H  L  *  R  R  K  E  N  W  R  I  L  C  F  A  L  V  M  I  D  Q  M  K  I  C  L  K  S  L  A  M  L  C  P  E  I  L  F  H  M  M  P  R  Y  L  L  A  Q  L  D  K  N  L  A  K  Q  S  I  T  W  M  T  H  L  R  W  C  L  C  *  T  P  L  L  M  P  L  I  L  Q  *  L  L  M  T  M  N  L  R  T  P  T  E  C  S  Y  Q  M  F  C  L  L  R  L  P  S  L  L  N  V  Y  S  R  S  E  D  G  T  L  S  I  *  V  R  F  R  G  L  R  R  W  N  L  K  F  C  S  I  I  L  S  F  L  I  V  L  F  F  Y  H  *  P  V  C  N  I  S  L </second_frame>
            <third_frame>   G  H  Q  R  F  S  C  R  K  S  L  Y  I  F  S  G  E  R  K  T  G  G  F  C  A  L  H  W  *  *  *  I  R  *  R  Y  V  *  N  H  W  R  C  F  V  Q  K  Y  Y  F  I  *  C  Q  G  I  C  L  H  S  W  T  K  T  *  Q  S  K  V  L  L  G  *  H  I  *  G  G  A  Y  A  R  L  P  C  *  C  H  *  Y  S  S  D  F  *  *  R  *  T  C  G  L  R  L  N  V  A  T  R  C  F  V  C  F  G  Y  L  L  Y  *  M  Y  I  P  G  L  K  M  A  H  C  P  F  E  F  G  F  E  V  *  D  G  G  I  S  N  S  V  Q  S  F  F  P  F  *  L  F  Y  S  F  I  I  S  L  Y  V  I  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0075L20.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99711" stop="99397"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVTKGLVAEKVFTSLAEKGKLADFVLCIGDDRSDEDMFEIIGDALSRNIISYDAKVFACTVGQKPSKAKYYLDDTSEVVLMLDSLADATDTPVTSDDDEPADSD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 29 chains have been computed
$ 
$ memory statistics:
$ 244544 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 15284 bytes was the average size of a spliced alignment
$ 20488 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1707 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 36 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 05:44:27
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