<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 21:51:37"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722135" ref_strand="+" ref_description="SGN-E722135 [FC16BC07]">
      <seq>gggcgattggcggcaaatcggccgaattgacaaacctaatttcaactcaccaatttcacaacaacaaaaaaaaaccctacctttttctggttcttgttctggttcttcttgataatcggcggcttatccttcttcgaaattgaaatttttagtcatgagttatgaaccaaacacggccttaaacctaagtctatcaagaaatgatcttttatttgaccaatcatcatcatcatcatcatcaacccctttaagcccggttgagccacgtgttttttcttgcaattattgtaaaaaaaagttttaaagttcacaagctctaggaggacaccagaatgctcataaactcgaaggaaccctagccaaaaaaagtagggagttgagttcaaccctacgcgggcctcattctggttggtcaaatcttagtaatagtaataataatagtaatagtaataatcattgctcgttgagccctagtggtccgagccatactagtcatggtcatggtcatggtgctaggtttgttacaaataatgatttattaagctatggaagaagagagatgatgataagttatgaatcaatgaaaaatggtcatgagagtgttcaagaggattttggacatcttgatttgtcattaaggctttaatcatcatcactttttttttaaaaaaaaaaaacaatttgggaaatttgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="3977" stop="5250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4279" g_stop="4950" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="697" r_length="666" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E722135" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4279" e_stop="4950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTAATTTCAACTCACCAATTTCACAACAACAAAAAAAAAACCCTACCTTTTTCTTGTTCTTGTTCTTGTTCTTGTTCTTCTTGATAATCGTCGTCTTATCCTTCTTCGAAATTGAAATTTTTAGTCATGAGTTATGAACCAAACACGGCCTTAAACCTAAGTCTATCAAGAAATGATCTTTTATTTGACCAATCATCATCATCATCATCATCAACCCCTTTAAGCCCGGTTGAGCCACGTGTTTTTTCTTGCAATTATTGTAGAAGAAAGTTTTATAGTTCACAAGCTCTAGGAGGACACCAGAATGCTCATAAACTCGAAAGAACCCTAGCCAAGAAGAGTAGGGAGTTGAGTTCAACCCTACGCGGGCCTCATTCTAGTTGGTCAAATCATAGTAATAGTAATAATAATAGTAATAGTAATAATCATTGCTCGTTGAGCCCTAGTGGTCCGAGCCATACTAGTCATGGTCATGGTCATGGTGCTAGGTTTGTTACAAATAATGATTTAATAAGCTATGGAAGAAGAGAGATGATGATGAGTTATGAATCAATGAAAAATGGTCATGAGAGTGTTCAAGAGGATTTTGGACATCTTGATTTGTCATTAAGGCTTTAATCATCATCACTTTTTTTTT-TAAAAAAAAAATAATTTTGGTTATTTGTTTT</genome_strand>
        <mrna_strand>AAACCTAATTTCAACTCACCAATTTCACAACAAC-AAAAAAAAACCCTACCTTTTTCTGGTTCTTGTTCT-G-----GTTCTTCTTGATAATCGGCGGCTTATCCTTCTTCGAAATTGAAATTTTTAGTCATGAGTTATGAACCAAACACGGCCTTAAACCTAAGTCTATCAAGAAATGATCTTTTATTTGACCAATCATCATCATCATCATCATCAACCCCTTTAAGCCCGGTTGAGCCACGTGTTTTTTCTTGCAATTATTGTAAAAAAAAGTTTTAAAGTTCACAAGCTCTAGGAGGACACCAGAATGCTCATAAACTCGAAGGAACCCTAGCCAAAAAAAGTAGGGAGTTGAGTTCAACCCTACGCGGGCCTCATTCTGGTTGGTCAAATCTTAGTAATAGTAATAATAATAGTAATAGTAATAATCATTGCTCGTTGAGCCCTAGTGGTCCGAGCCATACTAGTCATGGTCATGGTCATGGTGCTAGGTTTGTTACAAATAATGATTTATTAAGCTATGGAAGAAGAGAGATGATGATAAGTTATGAATCAATGAAAAATGGTCATGAGAGTGTTCAAGAGGATTTTGGACATCTTGATTTGTCATTAAGGCTTTAATCATCATCACTTTTTTTTTAAAAAAAAAAAACAATTTGGGAAATTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390826" ref_strand="+" ref_description="SGN-E390826 [TUS-44-C2](-)">
      <seq>ccaatttcacaacaacaaaaaaaaaaaccctacctttttcttgttcttgttcttgttcttgttcttcttgataatcgtcgtcttatccttcttcgaaattgaaatttttagtcatgagttatgaaccaaacacggccttaaacctaagtctatcaagaaatgatcttttatttgaccaatcatcatcatcatcatcatcaacccctttaagcccggttgagccacgtgttttttcttgcaattattgtagaagaaagttttatagttcacaagctctaggaggacaccagaatgctcataaactcgaaagaaccctagccaagaagagtagggagttgagttcaaccctacgcgggcctcattctagttggtcaaatcatagtaatagtaataataatagtaatagtaataatcattgctcgttgagccctagtggtccgagccatactagtcatggtcatggtcatggtgctaggtttgttacaaataatgatttaataagctatggaagaagagagatgatgatgagttatgaatcaatgaaaaatggtcatgagagtgttcaagaggattttggacatcttgatttgtcattaaggctttaatcatcatcacttttttttttttaaaaaaaaaataattttggttatttgttttttacttcaagatattgttgtaattttaacctattttgatgtggttaattaattaaagattctactcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="3997" stop="5318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4297" g_stop="5026" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E390826" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4297" e_stop="5026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTCACAACAACA-AAAAAAAAACCCTACCTTTTTCTTGTTCTTGTTCTTGTTCTTGTTCTTCTTGATAATCGTCGTCTTATCCTTCTTCGAAATTGAAATTTTTAGTCATGAGTTATGAACCAAACACGGCCTTAAACCTAAGTCTATCAAGAAATGATCTTTTATTTGACCAATCATCATCATCATCATCATCAACCCCTTTAAGCCCGGTTGAGCCACGTGTTTTTTCTTGCAATTATTGTAGAAGAAAGTTTTATAGTTCACAAGCTCTAGGAGGACACCAGAATGCTCATAAACTCGAAAGAACCCTAGCCAAGAAGAGTAGGGAGTTGAGTTCAACCCTACGCGGGCCTCATTCTAGTTGGTCAAATCATAGTAATAGTAATAATAATAGTAATAGTAATAATCATTGCTCGTTGAGCCCTAGTGGTCCGAGCCATACTAGTCATGGTCATGGTCATGGTGCTAGGTTTGTTACAAATAATGATTTAATAAGCTATGGAAGAAGAGAGATGATGATGAGTTATGAATCAATGAAAAATGGTCATGAGAGTGTTCAAGAGGATTTTGGACATCTTGATTTGTCATTAAGGCTTTAATCATCATCAC--TTTTTTTTTTAAAAAAAAAATAATTTTGGTTATTTGTTTTTTACTTCAAGATATTGTTGTAATTTTAACCTATTTTGATGTGGTTAATTAATTAAAGATTCTACTCAAGGGCGATT</genome_strand>
        <mrna_strand>CCAATTTCACAACAACAAAAAAAAAAACCCTACCTTTTTCTTGTTCTTGTTCTTGTTCTTGTTCTTCTTGATAATCGTCGTCTTATCCTTCTTCGAAATTGAAATTTTTAGTCATGAGTTATGAACCAAACACGGCCTTAAACCTAAGTCTATCAAGAAATGATCTTTTATTTGACCAATCATCATCATCATCATCATCAACCCCTTTAAGCCCGGTTGAGCCACGTGTTTTTTCTTGCAATTATTGTAGAAGAAAGTTTTATAGTTCACAAGCTCTAGGAGGACACCAGAATGCTCATAAACTCGAAAGAACCCTAGCCAAGAAGAGTAGGGAGTTGAGTTCAACCCTACGCGGGCCTCATTCTAGTTGGTCAAATCATAGTAATAGTAATAATAATAGTAATAGTAATAATCATTGCTCGTTGAGCCCTAGTGGTCCGAGCCATACTAGTCATGGTCATGGTCATGGTGCTAGGTTTGTTACAAATAATGATTTAATAAGCTATGGAAGAAGAGAGATGATGATGAGTTATGAATCAATGAAAAATGGTCATGAGAGTGTTCAAGAGGATTTTGGACATCTTGATTTGTCATTAAGGCTTTAATCATCATCACTTTTTTTTTTTTAAAAAAAAAATAATTTTGGTTATTTGTTTTTTACTTCAAGATATTGTTGTAATTTTAACCTATTTTGATGTGGTTAATTAATTAAAGATTCTACTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367892" ref_strand="+" ref_description="SGN-E367892 [TUS-22-G15]">
      <seq>ccattttaccaccaccaaaaaaaaaaccctacctttttcttggtcctggtcctggtcctggtcctcctggataaccgccgcctaatcctttttcaaaattgaaatttttagtcatgagttataacccaaacacggccttaaacctaagtctatcaaaaaatgatcttttatttgaccaatcatcatcatcatcatcatcaacccctttaagcccggttgagccacgtgttttttcttgcaattattgtagaagaaagttttatagttcacaagctctaggaggacaccagaatgctcataaactcgaaagaaccctagccaagaagagtagggagttgagttcaaccctacgcgggcctcattctagttggtcaaatcatagtaatagtaataataatagtaatagtaataatcattgctcgttgagccctagtggtccgagccatactagtcatggtcatggtcatggtgctaggtttgttacaaataatgatttaataagctatggaagaagagagatgatgatgagttatgaatcaatgaaaaatggtcatgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="3998" stop="5154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4297" g_stop="4854" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E367892" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4297" e_stop="4854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTCACAACAACAAAAAAAAAACCCTACCTTTTTCTT-GTTCTTGTTCTTGTTCTTGTTCTTCTTGATAATCGTCGTCTTATCCTTCTTCGAAATTGAAATTTTTAGTCATGAGTTATGAACCAAACACGGCCTTAAACCTAAGTCTATCAAGAAATGATCTTTTATTTGACCAATCATCATCATCATCATCATCAACCCCTTTAAGCCCGGTTGAGCCACGTGTTTTTTCTTGCAATTATTGTAGAAGAAAGTTTTATAGTTCACAAGCTCTAGGAGGACACCAGAATGCTCATAAACTCGAAAGAACCCTAGCCAAGAAGAGTAGGGAGTTGAGTTCAACCCTACGCGGGCCTCATTCTAGTTGGTCAAATCATAGTAATAGTAATAATAATAGTAATAGTAATAATCATTGCTCGTTGAGCCCTAGTGGTCCGAGCCATACTAGTCATGGTCATGGTCATGGTGCTAGGTTTGTTACAAATAATGATTTAATAAGCTATGGAAGAAGAGAGATGATGATGAGTTATGAATCAATGAAAAATGGTCATGAGAG</genome_strand>
        <mrna_strand>CCATTTTACCACCACCAAAAAAAAAACCCTACCTTTTTCTTGGTCCTGGTCCTGGTCCTGGTCCTCCTGGATAACCGCCGCCTAATCCTTTTTCAAAATTGAAATTTTTAGTCATGAGTTATAACCCAAACACGGCCTTAAACCTAAGTCTATCAAAAAATGATCTTTTATTTGACCAATCATCATCATCATCATCATCAACCCCTTTAAGCCCGGTTGAGCCACGTGTTTTTTCTTGCAATTATTGTAGAAGAAAGTTTTATAGTTCACAAGCTCTAGGAGGACACCAGAATGCTCATAAACTCGAAAGAACCCTAGCCAAGAAGAGTAGGGAGTTGAGTTCAACCCTACGCGGGCCTCATTCTAGTTGGTCAAATCATAGTAATAGTAATAATAATAGTAATAGTAATAATCATTGCTCGTTGAGCCCTAGTGGTCCGAGCCATACTAGTCATGGTCATGGTCATGGTGCTAGGTTTGTTACAAATAATGATTTAATAAGCTATGGAAGAAGAGAGATGATGATGAGTTATGAATCAATGAAAAATGGTCATGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390827" ref_strand="+" ref_description="SGN-E390827 [TUS-44-C2]">
      <seq>ccaatttcacaacaacaaaaaaaaaaaccctacctttttcttgttcttgttcttgttcttgttcttcttgataatcgtcgtcttatccttcttcgaaattgaaatttttagtcatgagttatgaaccaaacacggccttaaacctaagtctatcaagaaatgatcttttatttgaccaatcatcatcatcatcatcatcaacccctttaagcccggttgagccacgtgttttttcttgcaattattgtagaagaaagttttatagttcacaagctctaggaggacaccagaatgctcataaactcgaaagaaccctagccaagaagagtagggagttgagttcaaccctacgcgggcctcattctagttggtcaaatcatagtaatagtaataataatagtaatagtaataatcattgctcgttgagccctagtggtccgagccatactagtcatggtcatggtcatggtgctaggtttgttacaaataatgatttaataagctatggaaaaagagagatgatgatgagttatgaatcaatgaaaaatggtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="3997" stop="5150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4297" g_stop="4850" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E390827" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4297" e_stop="4850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTCACAACAACA-AAAAAAAAACCCTACCTTTTTCTTGTTCTTGTTCTTGTTCTTGTTCTTCTTGATAATCGTCGTCTTATCCTTCTTCGAAATTGAAATTTTTAGTCATGAGTTATGAACCAAACACGGCCTTAAACCTAAGTCTATCAAGAAATGATCTTTTATTTGACCAATCATCATCATCATCATCATCAACCCCTTTAAGCCCGGTTGAGCCACGTGTTTTTTCTTGCAATTATTGTAGAAGAAAGTTTTATAGTTCACAAGCTCTAGGAGGACACCAGAATGCTCATAAACTCGAAAGAACCCTAGCCAAGAAGAGTAGGGAGTTGAGTTCAACCCTACGCGGGCCTCATTCTAGTTGGTCAAATCATAGTAATAGTAATAATAATAGTAATAGTAATAATCATTGCTCGTTGAGCCCTAGTGGTCCGAGCCATACTAGTCATGGTCATGGTCATGGTGCTAGGTTTGTTACAAATAATGATTTAATAAGCTATGGAAGAAGAGAGATGATGATGAGTTATGAATCAATGAAAAATGGTCATG</genome_strand>
        <mrna_strand>CCAATTTCACAACAACAAAAAAAAAAACCCTACCTTTTTCTTGTTCTTGTTCTTGTTCTTGTTCTTCTTGATAATCGTCGTCTTATCCTTCTTCGAAATTGAAATTTTTAGTCATGAGTTATGAACCAAACACGGCCTTAAACCTAAGTCTATCAAGAAATGATCTTTTATTTGACCAATCATCATCATCATCATCATCAACCCCTTTAAGCCCGGTTGAGCCACGTGTTTTTTCTTGCAATTATTGTAGAAGAAAGTTTTATAGTTCACAAGCTCTAGGAGGACACCAGAATGCTCATAAACTCGAAAGAACCCTAGCCAAGAAGAGTAGGGAGTTGAGTTCAACCCTACGCGGGCCTCATTCTAGTTGGTCAAATCATAGTAATAGTAATAATAATAGTAATAGTAATAATCATTGCTCGTTGAGCCCTAGTGGTCCGAGCCATACTAGTCATGGTCATGGTCATGGTGCTAGGTTTGTTACAAATAATGATTTAATAAGCTATGGAAAAAGAGAGATGATGATGAGTTATGAATCAATGAAAAATGGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369480" ref_strand="+" ref_description="SGN-E369480 [TUS-23-G1]">
      <seq>caatttcacaacaacaaaaaaaaaaaccctacctttttcttgttcttgttcttgttcttgttcttcttgataatcgtcgtcttatccttcttcgaaattgaaatttttagtcatgagttatgaaccaaacacggccttaaacctaagtctatcaagaaatgatcttttatttgaccaatcatcatcatcatcatcatcaacccctttaagcccggttgagccacgtgttttttcttgcaattattgtagaagaaagttttatagttcacaagctctaggaggacaccagaatgctcataaactcgaaagaaccctagccaagaagagtagggagttgagttcaaccctacgcgggcctcattctagttggtcaaatcatagtaatagtaataataatagtaatagtaataatcattgctcgttgagccctagtggtccgagccatactagtcatggtcatggtcatggtgctaggtttgttacaaataatgatttaataagctatggaagaagagagatgatgatgagttatgaatcaatgaaaaatggtcatgagagtgttcaagaggattttggacatcttgatttgtcattaaggctttaatcatcatcacttttttttttttaaaaaaaaataattttggttatttgttttttacttaagatattgttgtaattttaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="3998" stop="5280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4298" g_stop="4980" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E369480" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4298" e_stop="4980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCACAACAACAA-AAAAAAAACCCTACCTTTTTCTTGTTCTTGTTCTTGTTCTTGTTCTTCTTGATAATCGTCGTCTTATCCTTCTTCGAAATTGAAATTTTTAGTCATGAGTTATGAACCAAACACGGCCTTAAACCTAAGTCTATCAAGAAATGATCTTTTATTTGACCAATCATCATCATCATCATCATCAACCCCTTTAAGCCCGGTTGAGCCACGTGTTTTTTCTTGCAATTATTGTAGAAGAAAGTTTTATAGTTCACAAGCTCTAGGAGGACACCAGAATGCTCATAAACTCGAAAGAACCCTAGCCAAGAAGAGTAGGGAGTTGAGTTCAACCCTACGCGGGCCTCATTCTAGTTGGTCAAATCATAGTAATAGTAATAATAATAGTAATAGTAATAATCATTGCTCGTTGAGCCCTAGTGGTCCGAGCCATACTAGTCATGGTCATGGTCATGGTGCTAGGTTTGTTACAAATAATGATTTAATAAGCTATGGAAGAAGAGAGATGATGATGAGTTATGAATCAATGAAAAATGGTCATGAGAGTGTTCAAGAGGATTTTGGACATCTTGATTTGTCATTAAGGCTTTAATCATCATCAC-TTTTTTTTTTAAAAAAAAAATAATTTTGGTTATTTGTTTTTTACTTCAAGATATTGTTGTAATTTTAACC</genome_strand>
        <mrna_strand>CAATTTCACAACAACAAAAAAAAAAACCCTACCTTTTTCTTGTTCTTGTTCTTGTTCTTGTTCTTCTTGATAATCGTCGTCTTATCCTTCTTCGAAATTGAAATTTTTAGTCATGAGTTATGAACCAAACACGGCCTTAAACCTAAGTCTATCAAGAAATGATCTTTTATTTGACCAATCATCATCATCATCATCATCAACCCCTTTAAGCCCGGTTGAGCCACGTGTTTTTTCTTGCAATTATTGTAGAAGAAAGTTTTATAGTTCACAAGCTCTAGGAGGACACCAGAATGCTCATAAACTCGAAAGAACCCTAGCCAAGAAGAGTAGGGAGTTGAGTTCAACCCTACGCGGGCCTCATTCTAGTTGGTCAAATCATAGTAATAGTAATAATAATAGTAATAGTAATAATCATTGCTCGTTGAGCCCTAGTGGTCCGAGCCATACTAGTCATGGTCATGGTCATGGTGCTAGGTTTGTTACAAATAATGATTTAATAAGCTATGGAAGAAGAGAGATGATGATGAGTTATGAATCAATGAAAAATGGTCATGAGAGTGTTCAAGAGGATTTTGGACATCTTGATTTGTCATTAAGGCTTTAATCATCATCACTTTTTTTTTTTTAAAAAAAAATAATTTTGGTTATTTGTTTTTTACTT-AAGATATTGTTGTAATTTTAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243513" ref_strand="+" ref_description="SGN-E243513 [cLED-34-H2]">
      <seq>caatttcacaacaacaaaaaaaaaaaccctacctttttcttggtcttgttcttgttcttgttcttcttgataatcgtcgtcttatccttcttcgaaattgaaatttttagtcatgagttatgaaccaaacacggccttaaacctaagtctatcaagaaatgatcttttatttgaccaatcatcatcatcatcatcatcaacccctttaagcccggttgagccacgtgttttttcttgcaattattgtagaagaaagttttatagttcacacgctctaggaggacaccagaatgctcataaactcgaaagaaccctagccaagaagagtagggagttgagttcaaccctacgcgggcctcattctagttggtcaaatcataggaatagcaataatactcgtaatagtgataatcattgctcgttgagccctagcggtccgagccatactagtcatggtcatggtcatggcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="3998" stop="5068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4298" g_stop="4768" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E243513" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4298" e_stop="4768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCACAACAACAA-AAAAAAAACCCTACCTTTTTCTTGTTCTTGTTCTTGTTCTTGTTCTTCTTGATAATCGTCGTCTTATCCTTCTTCGAAATTGAAATTTTTAGTCATGAGTTATGAACCAAACACGGCCTTAAACCTAAGTCTATCAAGAAATGATCTTTTATTTGACCAATCATCATCATCATCATCATCAACCCCTTTAAGCCCGGTTGAGCCACGTGTTTTTTCTTGCAATTATTGTAGAAGAAAGTTTTATAGTTCACAAGCTCTAGGAGGACACCAGAATGCTCATAAACTCGAAAGAACCCTAGCCAAGAAGAGTAGGGAGTTGAGTTCAACCCTACGCGGGCCTCATTCTAGTTGGTCAAATCATAGTAATAGTAATAATAATAGTAATAGTAATAATCATTGCTCGTTGAGCCCTAGTGGTCCGAGCCATACTAGTCATGGTCATGGTCATGGTGCT</genome_strand>
        <mrna_strand>CAATTTCACAACAACAAAAAAAAAAACCCTACCTTTTTCTTGGTCTTGTTCTTGTTCTTGTTCTTCTTGATAATCGTCGTCTTATCCTTCTTCGAAATTGAAATTTTTAGTCATGAGTTATGAACCAAACACGGCCTTAAACCTAAGTCTATCAAGAAATGATCTTTTATTTGACCAATCATCATCATCATCATCATCAACCCCTTTAAGCCCGGTTGAGCCACGTGTTTTTTCTTGCAATTATTGTAGAAGAAAGTTTTATAGTTCACACGCTCTAGGAGGACACCAGAATGCTCATAAACTCGAAAGAACCCTAGCCAAGAAGAGTAGGGAGTTGAGTTCAACCCTACGCGGGCCTCATTCTAGTTGGTCAAATCATAGGAATAGCAATAATACTCGTAATAGTGATAATCATTGCTCGTTGAGCCCTAGCGGTCCGAGCCATACTAGTCATGGTCATGGTCATGGCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237439" ref_strand="+" ref_description="SGN-E237439 [cLED-19-A13]">
      <seq>caatttcacatcaacaaaaaaaaaaaccctacctttttcttgttcttgttcttgttcttgatcttcttgataatcgacgtcttatccttcttcgaaattgaaatttttagtcatgagttatgaaccaaacacggccttaaacctaagtctatcaagaaatgatcttttatttgaccaatcatcatcatcatcatcatcaacccctttaagcccggttgagccacgtgttttttcttgcaattattgtagaagaaagttttatagttcacaagctctatgaggacaccagaatgctcataaactcgaaagaaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="3998" stop="4911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4298" g_stop="4611" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E237439" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4298" e_stop="4611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCACAACAACAAAAA-AAAAACCCTACCTTTTTCTTGTTCTTGTTCTTGTTCTTGTTCTTCTTGATAATCGTCGTCTTATCCTTCTTCGAAATTGAAATTTTTAGTCATGAGTTATGAACCAAACACGGCCTTAAACCTAAGTCTATCAAGAAATGATCTTTTATTTGACCAATCATCATCATCATCATCATCAACCCCTTTAAGCCCGGTTGAGCCACGTGTTTTTTCTTGCAATTATTGTAGAAGAAAGTTTTATAGTTCACAAGCTCTAGGAGGACACCAGAATGCTCATAAACTCGAAAGAACCCT</genome_strand>
        <mrna_strand>CAATTTCACATCAACAAAAAAAAAAACCCTACCTTTTTCTTGTTCTTGTTCTTGTTCTTGATCTTCTTGATAATCGACGTCTTATCCTTCTTCGAAATTGAAATTTTTAGTCATGAGTTATGAACCAAACACGGCCTTAAACCTAAGTCTATCAAGAAATGATCTTTTATTTGACCAATCATCATCATCATCATCATCAACCCCTTTAAGCCCGGTTGAGCCACGTGTTTTTTCTTGCAATTATTGTAGAAGAAAGTTTTATAGTTCACAAGCTCTATGAGGACACCAGAATGCTCATAAACTCGAAAGAACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369479" ref_strand="+" ref_description="SGN-E369479 [TUS-23-G1](-)">
      <seq>ttcacaacaacaaaaaaaaaaaccctacctttttcttgttcttgttcttgttcttgttcttcttgataatcgtcgtcttatccttcttcgaaattgaaatttttagtcatgagttatgaaccaaacacggccttaaacctaagtctatcaagaaatgatcttttatttgaccaatcatcatcatcatcatcatcaacccctttaagcccggttgagccacgtgttttttcttgcaattattgtagaagaaagttttatagttcacaagctctaggaggacaccagaatgctcataaactcgaaagaaccctagccaagaagagtagggagttgagttcaaccctacgcgggcctcattctagttggtcaaatcatagtaatagtaataataatagtaatagtaataatcattgctcgttgagccctagtggtccgagccatactagtcatggtcatggtcatggtgctaggtttgttacaaataatgatttaataagctatggaagaagagagatgatgatgagttatgaatcaatgaaaaatggtcatgagagtgttcaagaggattttggacatcttgatttgtcattaaggctttaatcatcatcacttttttttttttaaaaaaaaaataattttggttatttgttttttacttcaagatattgttgtaattttaacctattttgatgtggttaattaattaaagattctactcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="4002" stop="5318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4302" g_stop="5025" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E369479" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4302" e_stop="5025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACAACAACAAAAAA-AAAACCCTACCTTTTTCTTGTTCTTGTTCTTGTTCTTGTTCTTCTTGATAATCGTCGTCTTATCCTTCTTCGAAATTGAAATTTTTAGTCATGAGTTATGAACCAAACACGGCCTTAAACCTAAGTCTATCAAGAAATGATCTTTTATTTGACCAATCATCATCATCATCATCATCAACCCCTTTAAGCCCGGTTGAGCCACGTGTTTTTTCTTGCAATTATTGTAGAAGAAAGTTTTATAGTTCACAAGCTCTAGGAGGACACCAGAATGCTCATAAACTCGAAAGAACCCTAGCCAAGAAGAGTAGGGAGTTGAGTTCAACCCTACGCGGGCCTCATTCTAGTTGGTCAAATCATAGTAATAGTAATAATAATAGTAATAGTAATAATCATTGCTCGTTGAGCCCTAGTGGTCCGAGCCATACTAGTCATGGTCATGGTCATGGTGCTAGGTTTGTTACAAATAATGATTTAATAAGCTATGGAAGAAGAGAGATGATGATGAGTTATGAATCAATGAAAAATGGTCATGAGAGTGTTCAAGAGGATTTTGGACATCTTGATTTGTCATTAAGGCTTTAATCATCATCAC--TTTTTTTTTTAAAAAAAAAATAATTTTGGTTATTTGTTTTTTACTTCAAGATATTGTTGTAATTTTAACCTATTTTGATGTGGTTAATTAATTAAAGATTCTACTCAAGGGCGAT</genome_strand>
        <mrna_strand>TTCACAACAACAAAAAAAAAAACCCTACCTTTTTCTTGTTCTTGTTCTTGTTCTTGTTCTTCTTGATAATCGTCGTCTTATCCTTCTTCGAAATTGAAATTTTTAGTCATGAGTTATGAACCAAACACGGCCTTAAACCTAAGTCTATCAAGAAATGATCTTTTATTTGACCAATCATCATCATCATCATCATCAACCCCTTTAAGCCCGGTTGAGCCACGTGTTTTTTCTTGCAATTATTGTAGAAGAAAGTTTTATAGTTCACAAGCTCTAGGAGGACACCAGAATGCTCATAAACTCGAAAGAACCCTAGCCAAGAAGAGTAGGGAGTTGAGTTCAACCCTACGCGGGCCTCATTCTAGTTGGTCAAATCATAGTAATAGTAATAATAATAGTAATAGTAATAATCATTGCTCGTTGAGCCCTAGTGGTCCGAGCCATACTAGTCATGGTCATGGTCATGGTGCTAGGTTTGTTACAAATAATGATTTAATAAGCTATGGAAGAAGAGAGATGATGATGAGTTATGAATCAATGAAAAATGGTCATGAGAGTGTTCAAGAGGATTTTGGACATCTTGATTTGTCATTAAGGCTTTAATCATCATCACTTTTTTTTTTTTAAAAAAAAAATAATTTTGGTTATTTGTTTTTTACTTCAAGATATTGTTGTAATTTTAACCTATTTTGATGTGGTTAATTAATTAAAGATTCTACTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274052" ref_strand="+" ref_description="SGN-E274052 [cLEN-8-L5]">
      <seq>cacaacaacaaaaaaaaaaaccctacctttttcttgttcttgttcttgttcttgttcttcttgataatcgtcgtcttatccttcttcgaaattgaaatttttagtcatgagttatgaaccaaacacggccttaaacctaagtctatcaagaaatgatcttttatttgaccaatcatcatcatcatcatcatcaacccctttaagcccggttgagccacgtgttttttcttgcaattattgtagaagaaagttttatagttcacaagctctaggaggacaccagaatgctcataaactcgaaagaaccctagccaagaagagtagggagttgagttcaaccctacgcgggcctcattctagttggtcaaatcatagtaatagtaataataatagtaatagtaataatcattgctcgttgagccctagtggtccgagccatactagtcatggtcatggtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="4004" stop="5063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4304" g_stop="4763" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E274052" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4304" e_stop="4763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAACAACAAAAAAAA-AACCCTACCTTTTTCTTGTTCTTGTTCTTGTTCTTGTTCTTCTTGATAATCGTCGTCTTATCCTTCTTCGAAATTGAAATTTTTAGTCATGAGTTATGAACCAAACACGGCCTTAAACCTAAGTCTATCAAGAAATGATCTTTTATTTGACCAATCATCATCATCATCATCATCAACCCCTTTAAGCCCGGTTGAGCCACGTGTTTTTTCTTGCAATTATTGTAGAAGAAAGTTTTATAGTTCACAAGCTCTAGGAGGACACCAGAATGCTCATAAACTCGAAAGAACCCTAGCCAAGAAGAGTAGGGAGTTGAGTTCAACCCTACGCGGGCCTCATTCTAGTTGGTCAAATCATAGTAATAGTAATAATAATAGTAATAGTAATAATCATTGCTCGTTGAGCCCTAGTGGTCCGAGCCATACTAGTCATGGTCATGGTCATG</genome_strand>
        <mrna_strand>CACAACAACAAAAAAAAAAACCCTACCTTTTTCTTGTTCTTGTTCTTGTTCTTGTTCTTCTTGATAATCGTCGTCTTATCCTTCTTCGAAATTGAAATTTTTAGTCATGAGTTATGAACCAAACACGGCCTTAAACCTAAGTCTATCAAGAAATGATCTTTTATTTGACCAATCATCATCATCATCATCATCAACCCCTTTAAGCCCGGTTGAGCCACGTGTTTTTTCTTGCAATTATTGTAGAAGAAAGTTTTATAGTTCACAAGCTCTAGGAGGACACCAGAATGCTCATAAACTCGAAAGAACCCTAGCCAAGAAGAGTAGGGAGTTGAGTTCAACCCTACGCGGGCCTCATTCTAGTTGGTCAAATCATAGTAATAGTAATAATAATAGTAATAGTAATAATCATTGCTCGTTGAGCCCTAGTGGTCCGAGCCATACTAGTCATGGTCATGGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720874" ref_strand="+" ref_description="SGN-E720874 [FC12AE03]">
      <seq>aatcggccgaattgaaattcatctcaaaaccctttcaatcttgagaaaaaaaatgacatttatagacttattactcttttcactatattccttttttcttaattttcttcctcaaattccaaaaaacaagaaaaaaccccatttcatcaaatacaaaaataccaaaatcctatcctattatgggttcttatttttccttattagcaaatcaagaacaaagaatccaagggttatctgatattatccttagcacccctaaacttacttttactctaattcgacccctcaatttccacacaattatcactgctaatccatctaacgttcagcacattctcaaaaccaatttctctgtttatcaaaaaggccagaactcaaacaacactcttgctgatttcctcagtaatggcattttcaacgtcgatggcgatatatggaagtatcaacgacaagttgctagccacgaattcaatactagatcactacgaaaattcgttgaatctgtagttgatgtcgaggtatctgaacgtctagttcccatactcgcgaatgctgctgctgaaaaaaatgttgtcaatctacaagacgtgttgcaaaggttcgcatttgataacatttgtaaaattgcatttggttatgatccaaagtatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="9071" stop="10291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9349" g_stop="9991" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="653" r_length="640" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E720874" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9349" e_stop="9991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCATCTCAAAAAAATCATCAATCTTGAGAAAAAAAATGACATTTATAGACTTATTATTACTCTTTTCACT-TATTCCTTTTTTCTTAATTTTCTTCCTCAAATTCCAAAAAGCAAGAAAAAACCCCATTTCATCAAATACAAAAATACCAAAATCCTATCCTATTATTGGTTCTTATTTTTCCTTATTAGCAAATCAAGAACAAAGAATCCAATGGTTATCTGATATTATCCTTAGCACCCCTAAACTTACTTTTACTCTAATTCGACCCCTCAATTTCCACACAATTATCACTGCTAATCCATCTAACGTTCAGCACATTCTCAAAACCAATTTCTCTGTTTATCAAAAAGGCCAGAACTCAAACAACACTCTTGCTGATTTCCTCAGTAATGGCATTTTCAACGTCGATGGCGATATATGGAAGTATCAACGACAAGTTGCTAGCCACGAATTCAATACTAGATCACTACGAAAATTCGTTGAATCTGTAGTTGATGTCGAGGTATCTGAACGTCTAGTTCCCATACTCGCGAACGCTGCTGCTGAGAAAAATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTG</genome_strand>
        <mrna_strand>GAAATTCATCTCAAAACCCT-TTCAATCTTGAGAAAAAAAATGACATTTATAGAC---TTATTACTCTTTTCACTATATTCCTTTTTTCTTAATTTTCTTCCTCAAATTCCAAAAAACAAGAAAAAACCCCATTTCATCAAATACAAAAATACCAAAATCCTATCCTATTATGGGTTCTTATTTTTCCTTATTAGCAAATCAAGAACAAAGAATCCAAGGGTTATCTGATATTATCCTTAGCACCCCTAAACTTACTTTTACTCTAATTCGACCCCTCAATTTCCACACAATTATCACTGCTAATCCATCTAACGTTCAGCACATTCTCAAAACCAATTTCTCTGTTTATCAAAAAGGCCAGAACTCAAACAACACTCTTGCTGATTTCCTCAGTAATGGCATTTTCAACGTCGATGGCGATATATGGAAGTATCAACGACAAGTTGCTAGCCACGAATTCAATACTAGATCACTACGAAAATTCGTTGAATCTGTAGTTGATGTCGAGGTATCTGAACGTCTAGTTCCCATACTCGCGAATGCTGCTGCTGAAAAAAATGTTGTCAATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210127" ref_strand="+" ref_description="SGN-E210127 [cLEC-40-J21]">
      <seq>aaaaaaatcatcaatcttgagaaaaaaaatgacatttatagacttattattactcttttcacttattccttttttcttaattttcttcctcaaattccaaaaagcaagaaaaaaccccatttcatcaaatacaaaaataccaaaatcctatcctattattgggtcttatttttccttattagcaaatcaagaacaaagaatccaatgggtatctgatattatccttagcacccctaaacttacttttactctaattcgacccctcaatttccacacaattatcactgctaatccatctaacgttcagcacattctcaaaaccaatttctctgtttatcaaaaagggcagaactcaaacaacactcttgctgatttcctcagtaatggcattttcaacgtcgatggcgatatatggaagtatcaacgacaagttgcttgccacgaattcaatactagatcactacgaaaattcgttgaatctgtagttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="9061" stop="10150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9361" g_stop="9850" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E210127" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9361" e_stop="9850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATCATCAATCTTGAGAAAAAAAATGACATTTATAGACTTATTATTACTCTTTTCACTTATTCCTTTTTTCTTAATTTTCTTCCTCAAATTCCAAAAAGCAAGAAAAAACCCCATTTCATCAAATACAAAAATACCAAAATCCTATCCTATTATTGGTTCTTATTTTTCCTTATTAGCAAATCAAGAACAAAGAATCCAATGGTTATCTGATATTATCCTTAGCACCCCTAAACTTACTTTTACTCTAATTCGACCCCTCAATTTCCACACAATTATCACTGCTAATCCATCTAACGTTCAGCACATTCTCAAAACCAATTTCTCTGTTTATCAAAAAGGCCAGAACTCAAACAACACTCTTGCTGATTTCCTCAGTAATGGCATTTTCAACGTCGATGGCGATATATGGAAGTATCAACGACAAGTTGCTAGCCACGAATTCAATACTAGATCACTACGAAAATTCGTTGAATCTGTAGTTGAT</genome_strand>
        <mrna_strand>AAAAAAATCATCAATCTTGAGAAAAAAAATGACATTTATAGACTTATTATTACTCTTTTCACTTATTCCTTTTTTCTTAATTTTCTTCCTCAAATTCCAAAAAGCAAGAAAAAACCCCATTTCATCAAATACAAAAATACCAAAATCCTATCCTATTATTGGGTCTTATTTTTCCTTATTAGCAAATCAAGAACAAAGAATCCAATGGGTATCTGATATTATCCTTAGCACCCCTAAACTTACTTTTACTCTAATTCGACCCCTCAATTTCCACACAATTATCACTGCTAATCCATCTAACGTTCAGCACATTCTCAAAACCAATTTCTCTGTTTATCAAAAAGGGCAGAACTCAAACAACACTCTTGCTGATTTCCTCAGTAATGGCATTTTCAACGTCGATGGCGATATATGGAAGTATCAACGACAAGTTGCTTGCCACGAATTCAATACTAGATCACTACGAAAATTCGTTGAATCTGTAGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249813" ref_strand="+" ref_description="SGN-E249813 [cLEF-57-L12]">
      <seq>aaaaatcatcaatcttgagaaaaaaaatgacatttatagacttattattactcttttcacttattccttttttcttaattttcttcctcaaattccaaaaagcaagaaaaaaccccatttcatcaaatacaaaaataccaaaatcctatcctattattggttcttatttttccttattagcaaatcaagaacaaagaatccaatggttatctgatattatccttagcacccctaaacttacttttactctaattcgacccctcaatttccacacaattatcactgctaatccatctaacgttcagcacattctcaaaaccaatttctctgtttatcaaaaaggccagaactcaaacaacactcttgctgatttcctcagtaatggcattttcaacgtcgatggcgatatatggaagtatcaacgacaagttgctagccacgaattcaatactagatcactacgaaaattcgttgaatctgtagttgatgtcgaggtatctgaacgtctagttcccatactcgcgaacgctgctgctgagaaaaatgttgtcgatctacaagacgtgttgcaaaggttcgcatttgataacatttgtaaaattgcatttggttatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="9063" stop="10279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9363" g_stop="9979" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E249813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9363" e_stop="9979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCATCAATCTTGAGAAAAAAAATGACATTTATAGACTTATTATTACTCTTTTCACTTATTCCTTTTTTCTTAATTTTCTTCCTCAAATTCCAAAAAGCAAGAAAAAACCCCATTTCATCAAATACAAAAATACCAAAATCCTATCCTATTATTGGTTCTTATTTTTCCTTATTAGCAAATCAAGAACAAAGAATCCAATGGTTATCTGATATTATCCTTAGCACCCCTAAACTTACTTTTACTCTAATTCGACCCCTCAATTTCCACACAATTATCACTGCTAATCCATCTAACGTTCAGCACATTCTCAAAACCAATTTCTCTGTTTATCAAAAAGGCCAGAACTCAAACAACACTCTTGCTGATTTCCTCAGTAATGGCATTTTCAACGTCGATGGCGATATATGGAAGTATCAACGACAAGTTGCTAGCCACGAATTCAATACTAGATCACTACGAAAATTCGTTGAATCTGTAGTTGATGTCGAGGTATCTGAACGTCTAGTTCCCATACTCGCGAACGCTGCTGCTGAGAAAAATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGAT</genome_strand>
        <mrna_strand>AAAAATCATCAATCTTGAGAAAAAAAATGACATTTATAGACTTATTATTACTCTTTTCACTTATTCCTTTTTTCTTAATTTTCTTCCTCAAATTCCAAAAAGCAAGAAAAAACCCCATTTCATCAAATACAAAAATACCAAAATCCTATCCTATTATTGGTTCTTATTTTTCCTTATTAGCAAATCAAGAACAAAGAATCCAATGGTTATCTGATATTATCCTTAGCACCCCTAAACTTACTTTTACTCTAATTCGACCCCTCAATTTCCACACAATTATCACTGCTAATCCATCTAACGTTCAGCACATTCTCAAAACCAATTTCTCTGTTTATCAAAAAGGCCAGAACTCAAACAACACTCTTGCTGATTTCCTCAGTAATGGCATTTTCAACGTCGATGGCGATATATGGAAGTATCAACGACAAGTTGCTAGCCACGAATTCAATACTAGATCACTACGAAAATTCGTTGAATCTGTAGTTGATGTCGAGGTATCTGAACGTCTAGTTCCCATACTCGCGAACGCTGCTGCTGAGAAAAATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310904" ref_strand="+" ref_description="SGN-E310904 [cLEZ-17-B3]">
      <seq>aatcttgagaaaaaaaatgacatttatagacttattattactcttttcacttattccttttttcttaattttcttcctcaaattccaaaaagcacgaaaaaaccccatttcatcaaatacaaaaataccaaaatcctatcctattattggttcttatttttccttattagcaaatcaagaacaaagaatccaatggttatctgatattatccttagcacccctaaacttacttttactctaattcgacccctcaatttccacacaattatcactgctaatccatctaacgttcagcacattctcaaaaccaatttctctgtttatcaaaaaggccagaactcaaacaacactcttgctgatttcctcagtaatggcattttcaacgtcgatggcgatatatggaagtatcaacgacaagttgctagccacgaattcaatactagatcactacgaaaattcgctgaatctgtagttgatgtcgaggtatctgaacgtctagttcccatactcgcgaacgctgctgctgagaaaaatgttgtcgatctacaagacgtgttgcaaaggttcgcatttgataacatttgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="9073" stop="10261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9373" g_stop="9961" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E310904" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9373" e_stop="9961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTGAGAAAAAAAATGACATTTATAGACTTATTATTACTCTTTTCACTTATTCCTTTTTTCTTAATTTTCTTCCTCAAATTCCAAAAAGCAAGAAAAAACCCCATTTCATCAAATACAAAAATACCAAAATCCTATCCTATTATTGGTTCTTATTTTTCCTTATTAGCAAATCAAGAACAAAGAATCCAATGGTTATCTGATATTATCCTTAGCACCCCTAAACTTACTTTTACTCTAATTCGACCCCTCAATTTCCACACAATTATCACTGCTAATCCATCTAACGTTCAGCACATTCTCAAAACCAATTTCTCTGTTTATCAAAAAGGCCAGAACTCAAACAACACTCTTGCTGATTTCCTCAGTAATGGCATTTTCAACGTCGATGGCGATATATGGAAGTATCAACGACAAGTTGCTAGCCACGAATTCAATACTAGATCACTACGAAAATTCGTTGAATCTGTAGTTGATGTCGAGGTATCTGAACGTCTAGTTCCCATACTCGCGAACGCTGCTGCTGAGAAAAATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAA</genome_strand>
        <mrna_strand>AATCTTGAGAAAAAAAATGACATTTATAGACTTATTATTACTCTTTTCACTTATTCCTTTTTTCTTAATTTTCTTCCTCAAATTCCAAAAAGCACGAAAAAACCCCATTTCATCAAATACAAAAATACCAAAATCCTATCCTATTATTGGTTCTTATTTTTCCTTATTAGCAAATCAAGAACAAAGAATCCAATGGTTATCTGATATTATCCTTAGCACCCCTAAACTTACTTTTACTCTAATTCGACCCCTCAATTTCCACACAATTATCACTGCTAATCCATCTAACGTTCAGCACATTCTCAAAACCAATTTCTCTGTTTATCAAAAAGGCCAGAACTCAAACAACACTCTTGCTGATTTCCTCAGTAATGGCATTTTCAACGTCGATGGCGATATATGGAAGTATCAACGACAAGTTGCTAGCCACGAATTCAATACTAGATCACTACGAAAATTCGCTGAATCTGTAGTTGATGTCGAGGTATCTGAACGTCTAGTTCCCATACTCGCGAACGCTGCTGCTGAGAAAAATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214934" ref_strand="+" ref_description="SGN-E214934 [cLEC-78-J9]">
      <seq>tcttgagaaaaaaaatgacatttatagacttattattactcttttcacttattccttttttcttaattttcttcctcaaattccaaaaagcaagaaaaaaccccatttcatcaaatacaaaaataccaaaatcctatcctattattggttcttatttttccttattagcaaatcaagaacaaagaatccaatggttatctgatattatccttagcacccctaaacttacttttactctaattcgacccctcaatttccacacaattatcactgctaatccatctaacgttcagcacattctcaaaaccaatttctctgtttatcaaaaaggccagaactcaaacaacactcttgctgatttcctcagtaatggcattttcaacgtcgatggcgatatatggaagtatcaacgacaagttgctagccacgaattcaatactagatcactacgaaaattcgttgaatctgtagttgatgtcgaggtatctgaacgtctagttcccatactcgcgaacgctgctgctgagaaaaatgttgtcgatctacaagacgtgttgcaaaggttcgcatttgataacatttgtaaaattgcatttggttatgatccaaagtatttgttacctaacttacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="9075" stop="10308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9375" g_stop="10008" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E214934" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9375" e_stop="10008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGAGAAAAAAAATGACATTTATAGACTTATTATTACTCTTTTCACTTATTCCTTTTTTCTTAATTTTCTTCCTCAAATTCCAAAAAGCAAGAAAAAACCCCATTTCATCAAATACAAAAATACCAAAATCCTATCCTATTATTGGTTCTTATTTTTCCTTATTAGCAAATCAAGAACAAAGAATCCAATGGTTATCTGATATTATCCTTAGCACCCCTAAACTTACTTTTACTCTAATTCGACCCCTCAATTTCCACACAATTATCACTGCTAATCCATCTAACGTTCAGCACATTCTCAAAACCAATTTCTCTGTTTATCAAAAAGGCCAGAACTCAAACAACACTCTTGCTGATTTCCTCAGTAATGGCATTTTCAACGTCGATGGCGATATATGGAAGTATCAACGACAAGTTGCTAGCCACGAATTCAATACTAGATCACTACGAAAATTCGTTGAATCTGTAGTTGATGTCGAGGTATCTGAACGTCTAGTTCCCATACTCGCGAACGCTGCTGCTGAGAAAAATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTGTTACCTAACTTACCTGA</genome_strand>
        <mrna_strand>TCTTGAGAAAAAAAATGACATTTATAGACTTATTATTACTCTTTTCACTTATTCCTTTTTTCTTAATTTTCTTCCTCAAATTCCAAAAAGCAAGAAAAAACCCCATTTCATCAAATACAAAAATACCAAAATCCTATCCTATTATTGGTTCTTATTTTTCCTTATTAGCAAATCAAGAACAAAGAATCCAATGGTTATCTGATATTATCCTTAGCACCCCTAAACTTACTTTTACTCTAATTCGACCCCTCAATTTCCACACAATTATCACTGCTAATCCATCTAACGTTCAGCACATTCTCAAAACCAATTTCTCTGTTTATCAAAAAGGCCAGAACTCAAACAACACTCTTGCTGATTTCCTCAGTAATGGCATTTTCAACGTCGATGGCGATATATGGAAGTATCAACGACAAGTTGCTAGCCACGAATTCAATACTAGATCACTACGAAAATTCGTTGAATCTGTAGTTGATGTCGAGGTATCTGAACGTCTAGTTCCCATACTCGCGAACGCTGCTGCTGAGAAAAATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTGTTACCTAACTTACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299901" ref_strand="+" ref_description="SGN-E299901 [cLEW-1-H16]">
      <seq>atttatagacttattattactcttttcacttattccttttttcttaattttcttcctcaaattccaaaaagcaagaaaaaaccccatttcatcaaatacaaaaataccaaaatcctatcctattattggttcttatttttccttattagcaaatcaagaacaaagaatccaatggttatctgatattatccttagcacccctaaacttacttttactctaattcgacccctcaatttccacacaattatcactgctaatccatctaacgttcagcacattctcaaaaccaatttctctgtttatcaaaaaggccagaactcaaacaacactcttgctgatttcctcagtaatggcattttcaacgtcgatggcgatatatggaagtatcaacgacaagttgctagccacgaattcaatactagatcactacgaaaattcgttgaatctgtagttgatgtcgaggtatctgaacgtctagttcccatactcgcgaacgctgctgctgagaaaaatgttgtcgatctacaagacgtgttgcaaaggttcgcatttgataacatttgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="9094" stop="10261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9394" g_stop="9961" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E299901" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9394" e_stop="9961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATAGACTTATTATTACTCTTTTCACTTATTCCTTTTTTCTTAATTTTCTTCCTCAAATTCCAAAAAGCAAGAAAAAACCCCATTTCATCAAATACAAAAATACCAAAATCCTATCCTATTATTGGTTCTTATTTTTCCTTATTAGCAAATCAAGAACAAAGAATCCAATGGTTATCTGATATTATCCTTAGCACCCCTAAACTTACTTTTACTCTAATTCGACCCCTCAATTTCCACACAATTATCACTGCTAATCCATCTAACGTTCAGCACATTCTCAAAACCAATTTCTCTGTTTATCAAAAAGGCCAGAACTCAAACAACACTCTTGCTGATTTCCTCAGTAATGGCATTTTCAACGTCGATGGCGATATATGGAAGTATCAACGACAAGTTGCTAGCCACGAATTCAATACTAGATCACTACGAAAATTCGTTGAATCTGTAGTTGATGTCGAGGTATCTGAACGTCTAGTTCCCATACTCGCGAACGCTGCTGCTGAGAAAAATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAA</genome_strand>
        <mrna_strand>ATTTATAGACTTATTATTACTCTTTTCACTTATTCCTTTTTTCTTAATTTTCTTCCTCAAATTCCAAAAAGCAAGAAAAAACCCCATTTCATCAAATACAAAAATACCAAAATCCTATCCTATTATTGGTTCTTATTTTTCCTTATTAGCAAATCAAGAACAAAGAATCCAATGGTTATCTGATATTATCCTTAGCACCCCTAAACTTACTTTTACTCTAATTCGACCCCTCAATTTCCACACAATTATCACTGCTAATCCATCTAACGTTCAGCACATTCTCAAAACCAATTTCTCTGTTTATCAAAAAGGCCAGAACTCAAACAACACTCTTGCTGATTTCCTCAGTAATGGCATTTTCAACGTCGATGGCGATATATGGAAGTATCAACGACAAGTTGCTAGCCACGAATTCAATACTAGATCACTACGAAAATTCGTTGAATCTGTAGTTGATGTCGAGGTATCTGAACGTCTAGTTCCCATACTCGCGAACGCTGCTGCTGAGAAAAATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709422" ref_strand="+" ref_description="SGN-E709422 [FA51DH09]">
      <seq>tttattactcttttcacttattccttttttcttaattttcttcctcaaattccaaaaaacaagaaaaaaccccatttcatcaaatacaaaaataccaaaatcctatcctattattggttcttatttttccttattagcaaatcaagaacaaagaatccaatggttatctgatattatccttagcacccctaaacttacttttactctaattcgacccctcaatttccacacaattatcactgctaatccatctaacgttcagcacattctcaaaaccaatttctctgtttatcaaaaaggccagaactcaaacaacactcttgctgatttcctcagtaatggcattttcaacgtcgatggcgatatatggaagtatcaacgacaagttgctagccacgaattcaatactagatcactacgaaaattcgttgaatctgtagttgatgtcgaggtatctgaacgtctagttcccatactcgcgaatgctgctgctgagaaaaatgttgtcgatctacaagacgtgttgcaaaggttcgcatttgataacatttgtaaaattgcatttggttatgatccaaagtatttgttacctaacttacctgaagcacaattcgctgtagcatttgaagattgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="9107" stop="10341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9406" g_stop="10041" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E709422" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9406" e_stop="10041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTACTCTTTTCACTTATTCCTTTTTTCTTAATTTTCTTCCTCAAATTCCAAAAAGCAAGAAAAAACCCCATTTCATCAAATACAAAAATACCAAAATCCTATCCTATTATTGGTTCTTATTTTTCCTTATTAGCAAATCAAGAACAAAGAATCCAATGGTTATCTGATATTATCCTTAGCACCCCTAAACTTACTTTTACTCTAATTCGACCCCTCAATTTCCACACAATTATCACTGCTAATCCATCTAACGTTCAGCACATTCTCAAAACCAATTTCTCTGTTTATCAAAAAGGCCAGAACTCAAACAACACTCTTGCTGATTTCCTCAGTAATGGCATTTTCAACGTCGATGGCGATATATGGAAGTATCAACGACAAGTTGCTAGCCACGAATTCAATACTAGATCACTACGAAAATTCGTTGAATCTGTAGTTGATGTCGAGGTATCTGAACGTCTAGTTCCCATACTCGCGAACGCTGCTGCTGAGAAAAATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTGTTACCTAACTTACCTGAAGCAGAATTCGCGGTAGCATTTGAAGATTGTGT</genome_strand>
        <mrna_strand>TTTATTACTCTTTTCACTTATTCCTTTTTTCTTAATTTTCTTCCTCAAATTCCAAAAAACAAGAAAAAACCCCATTTCATCAAATACAAAAATACCAAAATCCTATCCTATTATTGGTTCTTATTTTTCCTTATTAGCAAATCAAGAACAAAGAATCCAATGGTTATCTGATATTATCCTTAGCACCCCTAAACTTACTTTTACTCTAATTCGACCCCTCAATTTCCACACAATTATCACTGCTAATCCATCTAACGTTCAGCACATTCTCAAAACCAATTTCTCTGTTTATCAAAAAGGCCAGAACTCAAACAACACTCTTGCTGATTTCCTCAGTAATGGCATTTTCAACGTCGATGGCGATATATGGAAGTATCAACGACAAGTTGCTAGCCACGAATTCAATACTAGATCACTACGAAAATTCGTTGAATCTGTAGTTGATGTCGAGGTATCTGAACGTCTAGTTCCCATACTCGCGAATGCTGCTGCTGAGAAAAATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTGTTACCTAACTTACCTGAAGCACAATTCGCTGTAGCATTTGAAGATTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205184" ref_strand="+" ref_description="SGN-E205184 [cLEC-16-P11]">
      <seq>gatcttattgtgccttattagcaaatcaagaacaaagaatccaatggttatctgatattatccttagcacccctaaacttacttttactctaattcgacccctcaatttccacacaattatcactgctaatccatctaacgttcagcacattctcaaaaccaatttctctgtttatcaaaaaggccagaactcaaacaacactcttgctgatttcctcagtaatggcattttcaacgtcgatggcgatatatggaagtatcaacgacaagttgctagccacgaattcaatactagatcactacgaaaattcgttgaatctgtagttgatgtcgaggtatctgaacgtctagttcccatactcgcgaacgctgctgctgagaaaaatgttgtcgatctacaagacgtgttgcaaaggttcgcatttgataacatttgtaaaattgcatttggttatgatccaaagtatttgttacctaacttacctgaagcagaattcgcggtagcatttgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="9222" stop="10335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9522" g_stop="10035" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E205184" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9522" e_stop="10035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTATTTTTCCTTATTAGCAAATCAAGAACAAAGAATCCAATGGTTATCTGATATTATCCTTAGCACCCCTAAACTTACTTTTACTCTAATTCGACCCCTCAATTTCCACACAATTATCACTGCTAATCCATCTAACGTTCAGCACATTCTCAAAACCAATTTCTCTGTTTATCAAAAAGGCCAGAACTCAAACAACACTCTTGCTGATTTCCTCAGTAATGGCATTTTCAACGTCGATGGCGATATATGGAAGTATCAACGACAAGTTGCTAGCCACGAATTCAATACTAGATCACTACGAAAATTCGTTGAATCTGTAGTTGATGTCGAGGTATCTGAACGTCTAGTTCCCATACTCGCGAACGCTGCTGCTGAGAAAAATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTGTTACCTAACTTACCTGAAGCAGAATTCGCGGTAGCATTTGAAGA</genome_strand>
        <mrna_strand>GATCTTATTGTGCCTTATTAGCAAATCAAGAACAAAGAATCCAATGGTTATCTGATATTATCCTTAGCACCCCTAAACTTACTTTTACTCTAATTCGACCCCTCAATTTCCACACAATTATCACTGCTAATCCATCTAACGTTCAGCACATTCTCAAAACCAATTTCTCTGTTTATCAAAAAGGCCAGAACTCAAACAACACTCTTGCTGATTTCCTCAGTAATGGCATTTTCAACGTCGATGGCGATATATGGAAGTATCAACGACAAGTTGCTAGCCACGAATTCAATACTAGATCACTACGAAAATTCGTTGAATCTGTAGTTGATGTCGAGGTATCTGAACGTCTAGTTCCCATACTCGCGAACGCTGCTGCTGAGAAAAATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTGTTACCTAACTTACCTGAAGCAGAATTCGCGGTAGCATTTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268027" ref_strand="+" ref_description="SGN-E268027 [cLEI-15-B13]">
      <seq>caatggttatctgatattatccttagcacccctaaacttactttgactctaattcgacccctcaatttccacacaattatcactgctaatccatctaacgttcagcacattctcaaaaccaatttctctgtttatcaaaaaggccagaactcaaacaacactcttgctgatttcctcagtaatggcattttcaacgtcgatggcgatatatggaagtatcaacgacaagttgctagccacgaattcaatactagatcactacgaaaattcgttgaatctgtagttgatgtcgaggtatctgaacgtctagttcccatactcgcgaacgctgctgctgagaaaaatgttgtcgatctacaagacgtgttgcaaaggttcgcatttgataacatttgtaaaattgcatttggttatgatccaaagtatttgttacctaacttacctgaagcagaattcgcggtagcatttgaagattgtgttcgattgagcagtgagagatttgctgtcccttttccgttgatttggaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="9263" stop="10393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9563" g_stop="10093" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E268027" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9563" e_stop="10093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGTTATCTGATATTATCCTTAGCACCCCTAAACTTACTTTTACTCTAATTCGACCCCTCAATTTCCACACAATTATCACTGCTAATCCATCTAACGTTCAGCACATTCTCAAAACCAATTTCTCTGTTTATCAAAAAGGCCAGAACTCAAACAACACTCTTGCTGATTTCCTCAGTAATGGCATTTTCAACGTCGATGGCGATATATGGAAGTATCAACGACAAGTTGCTAGCCACGAATTCAATACTAGATCACTACGAAAATTCGTTGAATCTGTAGTTGATGTCGAGGTATCTGAACGTCTAGTTCCCATACTCGCGAACGCTGCTGCTGAGAAAAATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTGTTACCTAACTTACCTGAAGCAGAATTCGCGGTAGCATTTGAAGATTGTGTTCGATTGAGCAGTGAGAGATTTGCTGTCCCTTTTCCGTTGATTTGGAAAATG</genome_strand>
        <mrna_strand>CAATGGTTATCTGATATTATCCTTAGCACCCCTAAACTTACTTTGACTCTAATTCGACCCCTCAATTTCCACACAATTATCACTGCTAATCCATCTAACGTTCAGCACATTCTCAAAACCAATTTCTCTGTTTATCAAAAAGGCCAGAACTCAAACAACACTCTTGCTGATTTCCTCAGTAATGGCATTTTCAACGTCGATGGCGATATATGGAAGTATCAACGACAAGTTGCTAGCCACGAATTCAATACTAGATCACTACGAAAATTCGTTGAATCTGTAGTTGATGTCGAGGTATCTGAACGTCTAGTTCCCATACTCGCGAACGCTGCTGCTGAGAAAAATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTGTTACCTAACTTACCTGAAGCAGAATTCGCGGTAGCATTTGAAGATTGTGTTCGATTGAGCAGTGAGAGATTTGCTGTCCCTTTTCCGTTGATTTGGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269461" ref_strand="+" ref_description="SGN-E269461 [cLEM-2-O14]">
      <seq>acccctcaatttccacacaattatcactgctaatccatctaacgttcagcacattctcaaaaccaatttctctgtttatcaaaaaggccagaactcaaacaacactcttgctgatttcctcagtaatggcattttcaacgtcgatggcgatatatggaagtatcaacgacaagttgctagccacgaattcaatactagatcactacgaaaattcgttgaatctgtagttgatgtcgaggtatctgaacgtctagttcccatactcgcgaacgctgctgctgagaaaaatgttgtcgatctacaagacgtgttgcaaaggttcgcatttgataacatttgtaaaattgcatttggttatgatccaaagtatttgttacctaacttacctgaagcagaattcgcggtagcatttgaagattgtgttcgattgagcagtgagagatttgctgtcccttttccgttgatttggaaaatgaaacgcgcttttggtattggttctgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="9319" stop="10422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9619" g_stop="10122" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E269461" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9619" e_stop="10122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCTCAATTTCCACACAATTATCACTGCTAATCCATCTAACGTTCAGCACATTCTCAAAACCAATTTCTCTGTTTATCAAAAAGGCCAGAACTCAAACAACACTCTTGCTGATTTCCTCAGTAATGGCATTTTCAACGTCGATGGCGATATATGGAAGTATCAACGACAAGTTGCTAGCCACGAATTCAATACTAGATCACTACGAAAATTCGTTGAATCTGTAGTTGATGTCGAGGTATCTGAACGTCTAGTTCCCATACTCGCGAACGCTGCTGCTGAGAAAAATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTGTTACCTAACTTACCTGAAGCAGAATTCGCGGTAGCATTTGAAGATTGTGTTCGATTGAGCAGTGAGAGATTTGCTGTCCCTTTTCCGTTGATTTGGAAAATGAAACGCGCTTTTGGTATTGGTTCTGAGAA</genome_strand>
        <mrna_strand>ACCCCTCAATTTCCACACAATTATCACTGCTAATCCATCTAACGTTCAGCACATTCTCAAAACCAATTTCTCTGTTTATCAAAAAGGCCAGAACTCAAACAACACTCTTGCTGATTTCCTCAGTAATGGCATTTTCAACGTCGATGGCGATATATGGAAGTATCAACGACAAGTTGCTAGCCACGAATTCAATACTAGATCACTACGAAAATTCGTTGAATCTGTAGTTGATGTCGAGGTATCTGAACGTCTAGTTCCCATACTCGCGAACGCTGCTGCTGAGAAAAATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTGTTACCTAACTTACCTGAAGCAGAATTCGCGGTAGCATTTGAAGATTGTGTTCGATTGAGCAGTGAGAGATTTGCTGTCCCTTTTCCGTTGATTTGGAAAATGAAACGCGCTTTTGGTATTGGTTCTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277987" ref_strand="+" ref_description="SGN-E277987 [cLER-4-O20]">
      <seq>aacactcttgctgatttcctcagtaatggcattttcaacgtcgatggcgatatatggaagtatcaacgacaagttgctagccacgaattcaatactagatcactacgaaaattcgttgaatctgtagctgatgtcgaggtatctgaacgtctagttcccatactcgcgaacgctgctgctgagaaaaatgttgccgatctacaagacgtgttgcaaaggttcgcatttgataacatttggaaaattgcatttggttatgatccaaagcatttgttacctaacttacctgaagcagaattcgcggtagcatctgaagattgtgttcgattgagcagagagagatttgctgtcccttttccggtgatttggaaaatgaaacgcgcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="9419" stop="10406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9719" g_stop="10106" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E277987" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9719" e_stop="10106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTCTTGCTGATTTCCTCAGTAATGGCATTTTCAACGTCGATGGCGATATATGGAAGTATCAACGACAAGTTGCTAGCCACGAATTCAATACTAGATCACTACGAAAATTCGTTGAATCTGTAGTTGATGTCGAGGTATCTGAACGTCTAGTTCCCATACTCGCGAACGCTGCTGCTGAGAAAAATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTGTTACCTAACTTACCTGAAGCAGAATTCGCGGTAGCATTTGAAGATTGTGTTCGATTGAGCAGTGAGAGATTTGCTGTCCCTTTTCCGTTGATTTGGAAAATGAAACGCGCTTTTG</genome_strand>
        <mrna_strand>AACACTCTTGCTGATTTCCTCAGTAATGGCATTTTCAACGTCGATGGCGATATATGGAAGTATCAACGACAAGTTGCTAGCCACGAATTCAATACTAGATCACTACGAAAATTCGTTGAATCTGTAGCTGATGTCGAGGTATCTGAACGTCTAGTTCCCATACTCGCGAACGCTGCTGCTGAGAAAAATGTTGCCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGGAAAATTGCATTTGGTTATGATCCAAAGCATTTGTTACCTAACTTACCTGAAGCAGAATTCGCGGTAGCATCTGAAGATTGTGTTCGATTGAGCAGAGAGAGATTTGCTGTCCCTTTTCCGGTGATTTGGAAAATGAAACGCGCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268365" ref_strand="+" ref_description="SGN-E268365 [cLEI-13-A14]">
      <seq>aaaaatgttgtcgatctacaagacgtgttgcaaagggtcgcatttgataacatttgtaaaattgcatttggttatgatccaaagtatttgttacctaacttacctgaagcagaattcgcggtagcatttgaagattgtgttcgattgagcagtgagagatttgctgtcccttttccgttgatttggaaaatgaaacgcgcttttggtattggttctgagaagaaattacgaattgcagttggagaagtgcgtgagtttgcgaagagaatagtgagggagaagttgaatgagagatcgtcgttggattcagctgatttgttgtcgagatttttgagtacagggcactctgatgaagatttcgttgttgatatagtgataagttttattttagcaggacgcgatacgacttcagctgcgttgacatggtttttctggttgatttcgaagaatgcagatgtggaatctgaaatattgagagaaattggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="9602" stop="10689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9902" g_stop="10389" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E268365" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9902" e_stop="10389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTGTTACCTAACTTACCTGAAGCAGAATTCGCGGTAGCATTTGAAGATTGTGTTCGATTGAGCAGTGAGAGATTTGCTGTCCCTTTTCCGTTGATTTGGAAAATGAAACGCGCTTTTGGTATTGGTTCTGAGAAGAAATTACGAATTGCAGTTGGAGAAGTGCGTGAGTTTGCGAAGAGAATAGTGAGGGAGAAGTTGAATGAGAGATCGTCGTTGGATTCAGCTGATTTGTTGTCGAGATTTTTGAGTACAGGGCACTCTGATGAAGATTTCGTTGTTGATATAGTGATAAGTTTTATTTTAGCAGGACGCGATACGACTTCAGCTGCGTTGACATGGTTTTTCTGGTTGATTTCGAAGAATGCAGATGTGGAATCTGAAATATTGAGAGAAATTGGGGG</genome_strand>
        <mrna_strand>AAAAATGTTGTCGATCTACAAGACGTGTTGCAAAGGGTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTGTTACCTAACTTACCTGAAGCAGAATTCGCGGTAGCATTTGAAGATTGTGTTCGATTGAGCAGTGAGAGATTTGCTGTCCCTTTTCCGTTGATTTGGAAAATGAAACGCGCTTTTGGTATTGGTTCTGAGAAGAAATTACGAATTGCAGTTGGAGAAGTGCGTGAGTTTGCGAAGAGAATAGTGAGGGAGAAGTTGAATGAGAGATCGTCGTTGGATTCAGCTGATTTGTTGTCGAGATTTTTGAGTACAGGGCACTCTGATGAAGATTTCGTTGTTGATATAGTGATAAGTTTTATTTTAGCAGGACGCGATACGACTTCAGCTGCGTTGACATGGTTTTTCTGGTTGATTTCGAAGAATGCAGATGTGGAATCTGAAATATTGAGAGAAATTGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210297" ref_strand="+" ref_description="SGN-E210297 [cLEC-35-C14]">
      <seq>aatgttgtcgatctacaagacgtgttgcaaaggttcgcatttgataacatttgtaaaattgcatttggttatgatccaaagtatttgttacctaacttacctgaagcagaattcgcggtagcatttgaagattgtgttcgattgagcagtgagagatttgctgtcccttttccgttgatttggaaaatgaaacgcgcttttggtattggttctgagaagaaattacgaattgcagttggagaagtgcgtgagtttgcgaagagaatagtgagggagaagttgaatgagagatcgtcgttggattcagctgatttgttgtcgagatttttgagtacagggcactctgatgaagatttcgttgttgatatagtgataagttttattttagcaggacgcgatacgacttcagctgcgttgacatggtttttctggttgatttcgaagaatgcagatgtggaatctgaaatattgagagaaattgggggaaaagaagaggatgtttcaatgcgatacgacgaggtgaagaacatgatgtatactcacgccttggtctgagagagcatgagattttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="9605" stop="10778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9905" g_stop="10478" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E210297" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9905" e_stop="10478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTGTTACCTAACTTACCTGAAGCAGAATTCGCGGTAGCATTTGAAGATTGTGTTCGATTGAGCAGTGAGAGATTTGCTGTCCCTTTTCCGTTGATTTGGAAAATGAAACGCGCTTTTGGTATTGGTTCTGAGAAGAAATTACGAATTGCAGTTGGAGAAGTGCGTGAGTTTGCGAAGAGAATAGTGAGGGAGAAGTTGAATGAGAGATCGTCGTTGGATTCAGCTGATTTGTTGTCGAGATTTTTGAGTACAGGGCACTCTGATGAAGATTTCGTTGTTGATATAGTGATAAGTTTTATTTTAGCAGGACGCGATACGACTTCAGCTGCGTTGACATGGTTTTTCTGGTTGATTTCGAAGAATGCAGATGTGGAATCTGAAATATTGAGAGAAATTGGGGGAAAAGAAGAGGATGTTTCAATGCGATACGACGAGGTGAAGAACATGATGTATACTCACGCCTCGCTCTGTGAGAGCATGAGATTTTATC</genome_strand>
        <mrna_strand>AATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTGTTACCTAACTTACCTGAAGCAGAATTCGCGGTAGCATTTGAAGATTGTGTTCGATTGAGCAGTGAGAGATTTGCTGTCCCTTTTCCGTTGATTTGGAAAATGAAACGCGCTTTTGGTATTGGTTCTGAGAAGAAATTACGAATTGCAGTTGGAGAAGTGCGTGAGTTTGCGAAGAGAATAGTGAGGGAGAAGTTGAATGAGAGATCGTCGTTGGATTCAGCTGATTTGTTGTCGAGATTTTTGAGTACAGGGCACTCTGATGAAGATTTCGTTGTTGATATAGTGATAAGTTTTATTTTAGCAGGACGCGATACGACTTCAGCTGCGTTGACATGGTTTTTCTGGTTGATTTCGAAGAATGCAGATGTGGAATCTGAAATATTGAGAGAAATTGGGGGAAAAGAAGAGGATGTTTCAATGCGATACGACGAGGTGAAGAACATGATGTATACTCACGCCTTGGTCTGAGAGAGCATGAGATTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376632" ref_strand="+" ref_description="SGN-E376632 [TUS-18-E6]">
      <seq>aatgttgtcgatctacaagacgtgttgcaaaggttcgcatttgataacatttgtaaaattgcatttggttatgatccaaagtatttgttacctaacttacctgaagcagaattcgcggtagcatttgaagattgtgttcgattgagcagtgagagatttgctgtcccttttccgttgatttggaaaatgaaacgcgcttttggtattggttctgagaagaaattacgaattgcagttggagaagtgcgtgagtttgcgaagagaatagtgagggagaagttgaatgagagatcgtcgttggattcagctgatttgttgtcgagatttttgagtacagggcactctgatgaagatttcgttgttgatatagtgataagttttattttagcaggacgcgatacgacttcagctgcgttgacatggtttttctggttgatttcgaacaatgcagatgtggaatctgaaatattgagagaaattgggggaaaagaagaggatgtttcaatgcgatacgacgaggttgaaagaacatgatgtatactcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="9605" stop="10747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9905" g_stop="10447" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E376632" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9905" e_stop="10447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTGTTACCTAACTTACCTGAAGCAGAATTCGCGGTAGCATTTGAAGATTGTGTTCGATTGAGCAGTGAGAGATTTGCTGTCCCTTTTCCGTTGATTTGGAAAATGAAACGCGCTTTTGGTATTGGTTCTGAGAAGAAATTACGAATTGCAGTTGGAGAAGTGCGTGAGTTTGCGAAGAGAATAGTGAGGGAGAAGTTGAATGAGAGATCGTCGTTGGATTCAGCTGATTTGTTGTCGAGATTTTTGAGTACAGGGCACTCTGATGAAGATTTCGTTGTTGATATAGTGATAAGTTTTATTTTAGCAGGACGCGATACGACTTCAGCTGCGTTGACATGGTTTTTCTGGTTGATTTCGAAGAATGCAGATGTGGAATCTGAAATATTGAGAGAAATTGGGGGAAAAGAAGAGGATGTTTCAATGCGATACGACGAGG-TG-AAGAACATGATGTATACTCAC</genome_strand>
        <mrna_strand>AATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTGTTACCTAACTTACCTGAAGCAGAATTCGCGGTAGCATTTGAAGATTGTGTTCGATTGAGCAGTGAGAGATTTGCTGTCCCTTTTCCGTTGATTTGGAAAATGAAACGCGCTTTTGGTATTGGTTCTGAGAAGAAATTACGAATTGCAGTTGGAGAAGTGCGTGAGTTTGCGAAGAGAATAGTGAGGGAGAAGTTGAATGAGAGATCGTCGTTGGATTCAGCTGATTTGTTGTCGAGATTTTTGAGTACAGGGCACTCTGATGAAGATTTCGTTGTTGATATAGTGATAAGTTTTATTTTAGCAGGACGCGATACGACTTCAGCTGCGTTGACATGGTTTTTCTGGTTGATTTCGAACAATGCAGATGTGGAATCTGAAATATTGAGAGAAATTGGGGGAAAAGAAGAGGATGTTTCAATGCGATACGACGAGGTTGAAAGAACATGATGTATACTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376519" ref_strand="+" ref_description="SGN-E376519 [TUS-17-F5]">
      <seq>aatgttgtcgatctacaagacgtgttgcaaaggttcgcatttgataacatttgtaaaattgcatttggttatgatccaaagtatttgttacctaacttacctgaagcagaattcgcggtagcatttgaagattgtgttcgattgagcagtgagagatttgctgtcccttttccgttgatttggaaaatgaaacgcgcttttggtattggttctgagaagaaattacgaattgcagttggagaagtgcgtgagtttgcgaagagaatagtgagggagaagttgaatgagagatcgtcgttggattcagctgatttgttgtcgagatttttgagtacagggcactctgatgaagatttcgttgttgatatagtgataagttttattttagcaggacgcgatacgacttcagctgcgttgacatggtttttctggttgatttcgaagaatgcagatgtggaatctgaaatattgagagaaattgggggaaaagaagaggatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="9605" stop="10706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9905" g_stop="10406" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E376519" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9905" e_stop="10406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTGTTACCTAACTTACCTGAAGCAGAATTCGCGGTAGCATTTGAAGATTGTGTTCGATTGAGCAGTGAGAGATTTGCTGTCCCTTTTCCGTTGATTTGGAAAATGAAACGCGCTTTTGGTATTGGTTCTGAGAAGAAATTACGAATTGCAGTTGGAGAAGTGCGTGAGTTTGCGAAGAGAATAGTGAGGGAGAAGTTGAATGAGAGATCGTCGTTGGATTCAGCTGATTTGTTGTCGAGATTTTTGAGTACAGGGCACTCTGATGAAGATTTCGTTGTTGATATAGTGATAAGTTTTATTTTAGCAGGACGCGATACGACTTCAGCTGCGTTGACATGGTTTTTCTGGTTGATTTCGAAGAATGCAGATGTGGAATCTGAAATATTGAGAGAAATTGGGGGAAAAGAAGAGGATGTTT</genome_strand>
        <mrna_strand>AATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTGTTACCTAACTTACCTGAAGCAGAATTCGCGGTAGCATTTGAAGATTGTGTTCGATTGAGCAGTGAGAGATTTGCTGTCCCTTTTCCGTTGATTTGGAAAATGAAACGCGCTTTTGGTATTGGTTCTGAGAAGAAATTACGAATTGCAGTTGGAGAAGTGCGTGAGTTTGCGAAGAGAATAGTGAGGGAGAAGTTGAATGAGAGATCGTCGTTGGATTCAGCTGATTTGTTGTCGAGATTTTTGAGTACAGGGCACTCTGATGAAGATTTCGTTGTTGATATAGTGATAAGTTTTATTTTAGCAGGACGCGATACGACTTCAGCTGCGTTGACATGGTTTTTCTGGTTGATTTCGAAGAATGCAGATGTGGAATCTGAAATATTGAGAGAAATTGGGGGAAAAGAAGAGGATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200323" ref_strand="+" ref_description="SGN-E200323 [cLEC-1-E13]">
      <seq>aatgttgtcgatctacaagacgtgttgcaaaggttcgcatttgataacatttgtaaaattgcatttggttatgatccaaagtatttgttacctaacttacctgaagcagaattcgcggtagcatttgaagattgtgttcgattgagcagtgagagatttgctgtcccttttccgttgatttggaaaatgaaacgcgcttttggtattggttctgagaagaaattacgaattgcagttggagaagtgcgtgagtttgcgaagagaatagtgagggagaagttgaatgagagatcgtcgttggattcagctgatttgttgtcgagatttttgagtacagggcactctgatgaagatttcgttgttgatatagtgataagttttattttagcaggacgcgatacgacttcagctgcgttgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="9605" stop="10624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9905" g_stop="10324" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E200323" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9905" e_stop="10324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTGTTACCTAACTTACCTGAAGCAGAATTCGCGGTAGCATTTGAAGATTGTGTTCGATTGAGCAGTGAGAGATTTGCTGTCCCTTTTCCGTTGATTTGGAAAATGAAACGCGCTTTTGGTATTGGTTCTGAGAAGAAATTACGAATTGCAGTTGGAGAAGTGCGTGAGTTTGCGAAGAGAATAGTGAGGGAGAAGTTGAATGAGAGATCGTCGTTGGATTCAGCTGATTTGTTGTCGAGATTTTTGAGTACAGGGCACTCTGATGAAGATTTCGTTGTTGATATAGTGATAAGTTTTATTTTAGCAGGACGCGATACGACTTCAGCTGCGTTGACA</genome_strand>
        <mrna_strand>AATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTGTTACCTAACTTACCTGAAGCAGAATTCGCGGTAGCATTTGAAGATTGTGTTCGATTGAGCAGTGAGAGATTTGCTGTCCCTTTTCCGTTGATTTGGAAAATGAAACGCGCTTTTGGTATTGGTTCTGAGAAGAAATTACGAATTGCAGTTGGAGAAGTGCGTGAGTTTGCGAAGAGAATAGTGAGGGAGAAGTTGAATGAGAGATCGTCGTTGGATTCAGCTGATTTGTTGTCGAGATTTTTGAGTACAGGGCACTCTGATGAAGATTTCGTTGTTGATATAGTGATAAGTTTTATTTTAGCAGGACGCGATACGACTTCAGCTGCGTTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257337" ref_strand="+" ref_description="SGN-E257337 [cLEG-45-A13]">
      <seq>tttttaacagaaatttattttagaaaatatttaaaacaaacgtaccagaaactgatacaatcttttagtttggaagaagatcaagtccactcaactcacagtgtcctcttaaggaaattattccactctaatatctgtaagtttgattttgaagttctcaacttttcaaattactctctttccttctatttcccatcaattcttgctacatacccaacaactacatcctttcttcgatagtaactgggaaacctcctttcatcttggccgtcaaatacgatataaacatcggctccacccctttctccaccaccggaaccaccttaaaccgctgcaaaacaccagccaccaccctcttcatttgcaaaaacgccatttctttccctaagcaaactcgcggtcctgcttgaaaaacaggataagcgaatggatcttttcccacaaacatccaattccccgtcatttcatccttattcaaccatctctctggcttgaactccgcccagtcttttccccaaatctcctccgatcttcccattgcgtaaggatgataagtaaccctcatccccttcttcacaaatgtcccatcgggcaatacatcatctttcatgacttctttcgaatccattggtaccggaggataaaatctcatgctctcacagagcgaggcgtgagtatacatcatgttcttcacctcgtcgtatcgcattgaaacatcctcttcttttccccccatttctctcaatatttcagattccacatctgcattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="11414" stop="10045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11117" g_stop="10345" g_length="773"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="773" r_length="773" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E257337" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11117" e_stop="10345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGAACAGAAATTTATTTTAGAAAATATTTAAAACAAACGTACCAGAAACTGATACAATCTTTTAGTTTGGAAGAAGATCAAGTCCACTCAACTCACAGTGTCCTCTTAAGGAAATTATTCCACTCTAATATCTGTAAGTTTGATTTTGAAGTTCTCAACTTTTCAAATTACTCTCTTTCCTTCTATTTCCCATCAATTCTTGCTACATACCCAACAACTACATCCTTTCTTCGATAGTAACTGGGAAACCTCCTTTCATCTTGGCCGTCAAATACGATATAAACATCGGCTCCACCCCTTTCTCCACCACCGGAACCACCTTAAACCGCTGCAAAACACCAGCCACCACCCTCTTCATTTGCAAAAACGCCATTTCTTTCCCTAAGCAAACTCGCGGTCCTGCTTGAAAAACAGGATAAGCGAATGGATCTTTTCCCACAAACATCCAATTCCCCGTCATTTCATCCTTATTCAACCATCTCTCTGGCTTGAACTCCGCCCAGTCTTTTCCCCAAATCTCCTCCGATCTTCCCATTGCGTAAGGATGATAAGTAACCCTCATCCCCTTCTTCACAAATGTCCCATCGGGCAATACATCATCTTTCATGACTTCTTTCGAATCCATTGGTACCGGAGGATAAAATCTCATGCTCTCACAGAGCGAGGCGTGAGTATACATCATGTTCTTCACCTCGTCGTATCGCATTGAAACATCCTCTTCTTTTCCCCCAATTTCTCTCAATATTTCAGATTCCACATCTGCATTCTTC</genome_strand>
        <mrna_strand>TTTTTAACAGAAATTTATTTTAGAAAATATTTAAAACAAACGTACCAGAAACTGATACAATCTTTTAGTTTGGAAGAAGATCAAGTCCACTCAACTCACAGTGTCCTCTTAAGGAAATTATTCCACTCTAATATCTGTAAGTTTGATTTTGAAGTTCTCAACTTTTCAAATTACTCTCTTTCCTTCTATTTCCCATCAATTCTTGCTACATACCCAACAACTACATCCTTTCTTCGATAGTAACTGGGAAACCTCCTTTCATCTTGGCCGTCAAATACGATATAAACATCGGCTCCACCCCTTTCTCCACCACCGGAACCACCTTAAACCGCTGCAAAACACCAGCCACCACCCTCTTCATTTGCAAAAACGCCATTTCTTTCCCTAAGCAAACTCGCGGTCCTGCTTGAAAAACAGGATAAGCGAATGGATCTTTTCCCACAAACATCCAATTCCCCGTCATTTCATCCTTATTCAACCATCTCTCTGGCTTGAACTCCGCCCAGTCTTTTCCCCAAATCTCCTCCGATCTTCCCATTGCGTAAGGATGATAAGTAACCCTCATCCCCTTCTTCACAAATGTCCCATCGGGCAATACATCATCTTTCATGACTTCTTTCGAATCCATTGGTACCGGAGGATAAAATCTCATGCTCTCACAGAGCGAGGCGTGAGTATACATCATGTTCTTCACCTCGTCGTATCGCATTGAAACATCCTCTTCTTTTCCCCCCATTTCTCTCAATATTTCAGATTCCACATCTGCATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258372" ref_strand="+" ref_description="SGN-E258372 [cLEG-47-A13]">
      <seq>tttttaacagaaatttattttagaaaatatttaaaacaaacgtaccagaaactgatacaatcttttagtttggaagaagatcaagtccactcaactcacagtgtcctcttaaggaaattattccactctaatatctgtaagtttgattttgaagttctcaacttttcaaattactctctttccttctatttcccatcaattcttgctacatacccaacaactacatcctttcttcgatagtaactgggaaacctcctttcatcttggccgtcaaatacgatataaacatcggctccacccctttctccaccaccggaaccaccttaaaccgctgcaaaacaccagccaccaccctcttcatttgcaaaaacgccatttctttccctaagcaaactcgcggtcctgcttgaaaaacaggataagcgaatggatcttttcccacaaacatccaattccccgtcatttcatccttattcaaccatctctctggcttgaactccgcccagtcttttccccaaatctcctccgatcttcccattgcgtaaggatgataagtaaccctcatccccttcttcacaaatgtcccatcgggcaatacatcatctttcatgacttctttcgaatccattggtaccggaggataaaatctcatgctctcacagagcgaagcgtgagtatacatcatgttcttcacctcgtcgtatcgcattgaaacatcctctttctttccccccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="11414" stop="10082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11117" g_stop="10381" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E258372" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11117" e_stop="10381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGAACAGAAATTTATTTTAGAAAATATTTAAAACAAACGTACCAGAAACTGATACAATCTTTTAGTTTGGAAGAAGATCAAGTCCACTCAACTCACAGTGTCCTCTTAAGGAAATTATTCCACTCTAATATCTGTAAGTTTGATTTTGAAGTTCTCAACTTTTCAAATTACTCTCTTTCCTTCTATTTCCCATCAATTCTTGCTACATACCCAACAACTACATCCTTTCTTCGATAGTAACTGGGAAACCTCCTTTCATCTTGGCCGTCAAATACGATATAAACATCGGCTCCACCCCTTTCTCCACCACCGGAACCACCTTAAACCGCTGCAAAACACCAGCCACCACCCTCTTCATTTGCAAAAACGCCATTTCTTTCCCTAAGCAAACTCGCGGTCCTGCTTGAAAAACAGGATAAGCGAATGGATCTTTTCCCACAAACATCCAATTCCCCGTCATTTCATCCTTATTCAACCATCTCTCTGGCTTGAACTCCGCCCAGTCTTTTCCCCAAATCTCCTCCGATCTTCCCATTGCGTAAGGATGATAAGTAACCCTCATCCCCTTCTTCACAAATGTCCCATCGGGCAATACATCATCTTTCATGACTTCTTTCGAATCCATTGGTACCGGAGGATAAAATCTCATGCTCTCACAGAGCGAGGCGTGAGTATACATCATGTTCTTCACCTCGTCGTATCGCATTGAAACATCCTCTTCTTTTCCCCCAATT</genome_strand>
        <mrna_strand>TTTTTAACAGAAATTTATTTTAGAAAATATTTAAAACAAACGTACCAGAAACTGATACAATCTTTTAGTTTGGAAGAAGATCAAGTCCACTCAACTCACAGTGTCCTCTTAAGGAAATTATTCCACTCTAATATCTGTAAGTTTGATTTTGAAGTTCTCAACTTTTCAAATTACTCTCTTTCCTTCTATTTCCCATCAATTCTTGCTACATACCCAACAACTACATCCTTTCTTCGATAGTAACTGGGAAACCTCCTTTCATCTTGGCCGTCAAATACGATATAAACATCGGCTCCACCCCTTTCTCCACCACCGGAACCACCTTAAACCGCTGCAAAACACCAGCCACCACCCTCTTCATTTGCAAAAACGCCATTTCTTTCCCTAAGCAAACTCGCGGTCCTGCTTGAAAAACAGGATAAGCGAATGGATCTTTTCCCACAAACATCCAATTCCCCGTCATTTCATCCTTATTCAACCATCTCTCTGGCTTGAACTCCGCCCAGTCTTTTCCCCAAATCTCCTCCGATCTTCCCATTGCGTAAGGATGATAAGTAACCCTCATCCCCTTCTTCACAAATGTCCCATCGGGCAATACATCATCTTTCATGACTTCTTTCGAATCCATTGGTACCGGAGGATAAAATCTCATGCTCTCACAGAGCGAAGCGTGAGTATACATCATGTTCTTCACCTCGTCGTATCGCATTGAAACATCCTCTTTCTTTCCCCCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258517" ref_strand="+" ref_description="SGN-E258517 [cLEG-47-A14]">
      <seq>tttttaacagaaatttattttagaaaatatttaaaacaaacgtaccagaaactgatacaatcttttagtttggaagaagatcaagtccactcaactcacagtgtcctcttaaggaaattattccactctaatatctgtaagtttgattttgaagttctcaacttttcaaattactctctttccttctatttcccatcaattcttgctacatacccaacaactacatcctttcttcgatagtaactgggaaacctcctttcatcttggccgtcaaatacgatataaacatcgggctccacccctttctccaccaccggaaccaccttaaaccgctgcaaaacaccagccaccaccctcttcatttgcaaaaacgccatttctttccctaagcaaactcgcggtcctgcttgaaaaacaggataagcgaatggatcttttcccacaaacatccaattccccgtcatttcatccttattcaaccatctctctggcttgaactccgcccagtcttttccccaaatctcctccgatcttcccattgcgtaaggatgataagtaaccctcatccccttcttcacaaatgtcccatcgggcaatacatcatctttcatgacttctttcgaatccattggtaccggaggataaaatctcatgctctcacagagcgaggcgtgagtatacatcatgttcttcacctcgtcgtatcgcattgaaacatcctcttctttttccccaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="11414" stop="10081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11117" g_stop="10381" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="738" r_length="738" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E258517" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11117" e_stop="10381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGAACAGAAATTTATTTTAGAAAATATTTAAAACAAACGTACCAGAAACTGATACAATCTTTTAGTTTGGAAGAAGATCAAGTCCACTCAACTCACAGTGTCCTCTTAAGGAAATTATTCCACTCTAATATCTGTAAGTTTGATTTTGAAGTTCTCAACTTTTCAAATTACTCTCTTTCCTTCTATTTCCCATCAATTCTTGCTACATACCCAACAACTACATCCTTTCTTCGATAGTAACTGGGAAACCTCCTTTCATCTTGGCCGTCAAATACGATATAAACATC-GGCTCCACCCCTTTCTCCACCACCGGAACCACCTTAAACCGCTGCAAAACACCAGCCACCACCCTCTTCATTTGCAAAAACGCCATTTCTTTCCCTAAGCAAACTCGCGGTCCTGCTTGAAAAACAGGATAAGCGAATGGATCTTTTCCCACAAACATCCAATTCCCCGTCATTTCATCCTTATTCAACCATCTCTCTGGCTTGAACTCCGCCCAGTCTTTTCCCCAAATCTCCTCCGATCTTCCCATTGCGTAAGGATGATAAGTAACCCTCATCCCCTTCTTCACAAATGTCCCATCGGGCAATACATCATCTTTCATGACTTCTTTCGAATCCATTGGTACCGGAGGATAAAATCTCATGCTCTCACAGAGCGAGGCGTGAGTATACATCATGTTCTTCACCTCGTCGTATCGCATTGAAACATCCTCTTCTTTTCCCCCAATT</genome_strand>
        <mrna_strand>TTTTTAACAGAAATTTATTTTAGAAAATATTTAAAACAAACGTACCAGAAACTGATACAATCTTTTAGTTTGGAAGAAGATCAAGTCCACTCAACTCACAGTGTCCTCTTAAGGAAATTATTCCACTCTAATATCTGTAAGTTTGATTTTGAAGTTCTCAACTTTTCAAATTACTCTCTTTCCTTCTATTTCCCATCAATTCTTGCTACATACCCAACAACTACATCCTTTCTTCGATAGTAACTGGGAAACCTCCTTTCATCTTGGCCGTCAAATACGATATAAACATCGGGCTCCACCCCTTTCTCCACCACCGGAACCACCTTAAACCGCTGCAAAACACCAGCCACCACCCTCTTCATTTGCAAAAACGCCATTTCTTTCCCTAAGCAAACTCGCGGTCCTGCTTGAAAAACAGGATAAGCGAATGGATCTTTTCCCACAAACATCCAATTCCCCGTCATTTCATCCTTATTCAACCATCTCTCTGGCTTGAACTCCGCCCAGTCTTTTCCCCAAATCTCCTCCGATCTTCCCATTGCGTAAGGATGATAAGTAACCCTCATCCCCTTCTTCACAAATGTCCCATCGGGCAATACATCATCTTTCATGACTTCTTTCGAATCCATTGGTACCGGAGGATAAAATCTCATGCTCTCACAGAGCGAGGCGTGAGTATACATCATGTTCTTCACCTCGTCGTATCGCATTGAAACATCCTCTTCTTTTTCCCCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257471" ref_strand="+" ref_description="SGN-E257471 [cLEG-45-B14]">
      <seq>tttttaacagaaatttattttagaaaatatttaaaacaaacgtaccagaaactgatacaatcttttagtttggaagaagatcaagtccactcaactcacagtgtcctcttaaggaaattattccactctaatatctgtaagtttgattttgaagttctcaacttttcaaattactctctttccttctatttcccatcaattcttgctacatacccaacaactacatcctttcttcgatagtaactgggaaacctcctttcatcttggccgtcaaatacgatataaacatcggctccacccctttctccaccaccggaaccaccttaaaccgctgcaaaacaccagccaccaccctcttcatttgcaaaaacgccatttctttccctaagcaaactcgcggtcctgcttgaaaaacaggataagcgaatggatcttttcccacaaacatccaattccccgtcatttcatccttattcaaccatctctctggcttgaactccgcccagtcttttccccaaatctcctccgatcttcccattgcgtaaggatgataagtaaccctcatccccttcttcacaaatgtcccatcgggcaatacatcatctttcatgacttctttcgaaccattggtacccggaggataaatctcatgctctcacagagcgaggcgtgagtatacatcatggtctttcactcgtcgtatcgcattgaaacatcctcttcttttccccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="11414" stop="10084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11117" g_stop="10384" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E257471" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11117" e_stop="10384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGAACAGAAATTTATTTTAGAAAATATTTAAAACAAACGTACCAGAAACTGATACAATCTTTTAGTTTGGAAGAAGATCAAGTCCACTCAACTCACAGTGTCCTCTTAAGGAAATTATTCCACTCTAATATCTGTAAGTTTGATTTTGAAGTTCTCAACTTTTCAAATTACTCTCTTTCCTTCTATTTCCCATCAATTCTTGCTACATACCCAACAACTACATCCTTTCTTCGATAGTAACTGGGAAACCTCCTTTCATCTTGGCCGTCAAATACGATATAAACATCGGCTCCACCCCTTTCTCCACCACCGGAACCACCTTAAACCGCTGCAAAACACCAGCCACCACCCTCTTCATTTGCAAAAACGCCATTTCTTTCCCTAAGCAAACTCGCGGTCCTGCTTGAAAAACAGGATAAGCGAATGGATCTTTTCCCACAAACATCCAATTCCCCGTCATTTCATCCTTATTCAACCATCTCTCTGGCTTGAACTCCGCCCAGTCTTTTCCCCAAATCTCCTCCGATCTTCCCATTGCGTAAGGATGATAAGTAACCCTCATCCCCTTCTTCACAAATGTCCCATCGGGCAATACATCATCTTTCATGACTTCTTTCGAATCCATTGGTA-CCGGAGGATAAAATCTCATGCTCTCACAGAGCGAGGCGTGAGTATACATCATGTTCTTCACCTCGTCGTATCGCATTGAAACATCCTCTTCTTTTCCCCCA</genome_strand>
        <mrna_strand>TTTTTAACAGAAATTTATTTTAGAAAATATTTAAAACAAACGTACCAGAAACTGATACAATCTTTTAGTTTGGAAGAAGATCAAGTCCACTCAACTCACAGTGTCCTCTTAAGGAAATTATTCCACTCTAATATCTGTAAGTTTGATTTTGAAGTTCTCAACTTTTCAAATTACTCTCTTTCCTTCTATTTCCCATCAATTCTTGCTACATACCCAACAACTACATCCTTTCTTCGATAGTAACTGGGAAACCTCCTTTCATCTTGGCCGTCAAATACGATATAAACATCGGCTCCACCCCTTTCTCCACCACCGGAACCACCTTAAACCGCTGCAAAACACCAGCCACCACCCTCTTCATTTGCAAAAACGCCATTTCTTTCCCTAAGCAAACTCGCGGTCCTGCTTGAAAAACAGGATAAGCGAATGGATCTTTTCCCACAAACATCCAATTCCCCGTCATTTCATCCTTATTCAACCATCTCTCTGGCTTGAACTCCGCCCAGTCTTTTCCCCAAATCTCCTCCGATCTTCCCATTGCGTAAGGATGATAAGTAACCCTCATCCCCTTCTTCACAAATGTCCCATCGGGCAATACATCATCTTTCATGACTTCTTTCGAA-CCATTGGTACCCGGAGGAT-AAATCTCATGCTCTCACAGAGCGAGGCGTGAGTATACATCATGGTCTTTCACTCGTCGTATCGCATTGAAACATCCTCTTCTTTTCCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240570" ref_strand="+" ref_description="SGN-E240570 [cLED-21-I22]">
      <seq>gatgcgatactacgaggtgaagaacatgaggtatactcacgcctcgctctgcgagagcatgagattttatcctccggtgccaatggattcgaaagaggtcatgaaagatgatgtattgcccgatgggacatttgtgaagaaggggatgagggttactaatcatcctgacacaaagggaagatcggaggagatttggggaaaagactgggcggtgttcaagccagagagatggttgaataaggatgaaatgacggggaattggatgtttgtgggaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10109" stop="10985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10408" g_stop="10685" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E240570" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10408" e_stop="10685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCGATACGACGAGGTGAAGAACATGATGTATACTCACGCCTCGCTCTGTGAGAGCATGAGATTTTATCCTCCGGTACCAATGGATTCGAAAGAAGTCATGAAAGATGATGTATTGCCCGATGGGACATTTGTGAAGAAGGGGATGAGGGTTACTTATCATCCTTACGCAATGGGAAGATCGGAGGAGATTTGGGGAAAAGACTGGGCGGAGTTCAAGCCAGAGAGATGGTTGAATAAGGATGAAATGACGGGGAATTGGATGTTTGTGGGAAAAG</genome_strand>
        <mrna_strand>GATGCGATACTACGAGGTGAAGAACATGAGGTATACTCACGCCTCGCTCTGCGAGAGCATGAGATTTTATCCTCCGGTGCCAATGGATTCGAAAGAGGTCATGAAAGATGATGTATTGCCCGATGGGACATTTGTGAAGAAGGGGATGAGGGTTACTAATCATCCTGACACAAAGGGAAGATCGGAGGAGATTTGGGGAAAAGACTGGGCGGTGTTCAAGCCAGAGAGATGGTTGAATAAGGATGAAATGACGGGGAATTGGATGTTTGTGGGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239669" ref_strand="+" ref_description="SGN-E239669 [cLED-33-K15]">
      <seq>tgcgatacgacgaggtgaagaacatgatgtatactcacgcctcgctctgtgagagcatgagattttatcctccggtaccaatggattcgaaagaagtcatgaaagatgatgtattgcccgatgggacatttgtgaagaaggggatgagggttacttatcatccttacgcaatgggaagatcggaggagatttggggaaaagactgggcggagttcaagccagagagatggttgaataaggatgaaatgacggggaattggatgtttgtgggaaaagatccattcgcttatcctgtttttcaagcaggaccgcgagtttgcttagggaaagaaatggcgtttttgcaaatgaagagggtggtggctggtgttttgcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10110" stop="11088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10410" g_stop="10788" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E239669" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10410" e_stop="10788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGATACGACGAGGTGAAGAACATGATGTATACTCACGCCTCGCTCTGTGAGAGCATGAGATTTTATCCTCCGGTACCAATGGATTCGAAAGAAGTCATGAAAGATGATGTATTGCCCGATGGGACATTTGTGAAGAAGGGGATGAGGGTTACTTATCATCCTTACGCAATGGGAAGATCGGAGGAGATTTGGGGAAAAGACTGGGCGGAGTTCAAGCCAGAGAGATGGTTGAATAAGGATGAAATGACGGGGAATTGGATGTTTGTGGGAAAAGATCCATTCGCTTATCCTGTTTTTCAAGCAGGACCGCGAGTTTGCTTAGGGAAAGAAATGGCGTTTTTGCAAATGAAGAGGGTGGTGGCTGGTGTTTTGCAGCG</genome_strand>
        <mrna_strand>TGCGATACGACGAGGTGAAGAACATGATGTATACTCACGCCTCGCTCTGTGAGAGCATGAGATTTTATCCTCCGGTACCAATGGATTCGAAAGAAGTCATGAAAGATGATGTATTGCCCGATGGGACATTTGTGAAGAAGGGGATGAGGGTTACTTATCATCCTTACGCAATGGGAAGATCGGAGGAGATTTGGGGAAAAGACTGGGCGGAGTTCAAGCCAGAGAGATGGTTGAATAAGGATGAAATGACGGGGAATTGGATGTTTGTGGGAAAAGATCCATTCGCTTATCCTGTTTTTCAAGCAGGACCGCGAGTTTGCTTAGGGAAAGAAATGGCGTTTTTGCAAATGAAGAGGGTGGTGGCTGGTGTTTTGCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311442" ref_strand="+" ref_description="SGN-E311442 [cLEZ-18-E2]">
      <seq>tgtgagagcatgagattttatcctccggtaccaatggattcgaaagaagtcatgaaagatgatgtattgcccgatgggacatttgtgaagaaggggatgagggttacttatcatccttacgcaatgggaagatcggaggagatttggggaaaagactgggcggagttcaagccagagagatggttgaataaggatgaaatgacggggaattggatgtttgtgggaaaagatccattcgcttatcctgtttttcaagcaggaccgcgagtttgcttagggaaagaaatggcgtttttgcaaatgaagagggtggtggctggtgttttgcagcggtttaaggtggttccggtggtggagaaaggggtggagccgatgtttatatcgtatttgacggccaagatgaaaggaggtttcccagttactatcgaagaaaggatgtagttgttgggtatgtagcaagaattgatgggaaatagaaggaaagagagtaatttgaaaagttgagaacttcaaaatcaaacttacagatattagagtggaataatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10157" stop="11304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10457" g_stop="11004" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E311442" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10457" e_stop="11004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAGAGCATGAGATTTTATCCTCCGGTACCAATGGATTCGAAAGAAGTCATGAAAGATGATGTATTGCCCGATGGGACATTTGTGAAGAAGGGGATGAGGGTTACTTATCATCCTTACGCAATGGGAAGATCGGAGGAGATTTGGGGAAAAGACTGGGCGGAGTTCAAGCCAGAGAGATGGTTGAATAAGGATGAAATGACGGGGAATTGGATGTTTGTGGGAAAAGATCCATTCGCTTATCCTGTTTTTCAAGCAGGACCGCGAGTTTGCTTAGGGAAAGAAATGGCGTTTTTGCAAATGAAGAGGGTGGTGGCTGGTGTTTTGCAGCGGTTTAAGGTGGTTCCGGTGGTGGAGAAAGGGGTGGAGCCGATGTTTATATCGTATTTGACGGCCAAGATGAAAGGAGGTTTCCCAGTTACTATCGAAGAAAGGATGTAGTTGTTGGGTATGTAGCAAGAATTGATGGGAAATAGAAGGAAAGAGAGTAATTTGAAAAGTTGAGAACTTCAAAATCAAACTTACAGATATTAGAGTGGAATAATTTC</genome_strand>
        <mrna_strand>TGTGAGAGCATGAGATTTTATCCTCCGGTACCAATGGATTCGAAAGAAGTCATGAAAGATGATGTATTGCCCGATGGGACATTTGTGAAGAAGGGGATGAGGGTTACTTATCATCCTTACGCAATGGGAAGATCGGAGGAGATTTGGGGAAAAGACTGGGCGGAGTTCAAGCCAGAGAGATGGTTGAATAAGGATGAAATGACGGGGAATTGGATGTTTGTGGGAAAAGATCCATTCGCTTATCCTGTTTTTCAAGCAGGACCGCGAGTTTGCTTAGGGAAAGAAATGGCGTTTTTGCAAATGAAGAGGGTGGTGGCTGGTGTTTTGCAGCGGTTTAAGGTGGTTCCGGTGGTGGAGAAAGGGGTGGAGCCGATGTTTATATCGTATTTGACGGCCAAGATGAAAGGAGGTTTCCCAGTTACTATCGAAGAAAGGATGTAGTTGTTGGGTATGTAGCAAGAATTGATGGGAAATAGAAGGAAAGAGAGTAATTTGAAAAGTTGAGAACTTCAAAATCAAACTTACAGATATTAGAGTGGAATAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733312" ref_strand="+" ref_description="SGN-E733312 [LB04CB08]">
      <seq>catcttccttacgcaatgggaagatcggaggagatttggggaaaagactgggcggagttcaagccagagagatggttgaataaggatgaaatgacggggaattggatgtttgtgggaaaagatccattcgcttatcctgtttttcaagcaggaccgcgagtttgcttagggaaagaaatggcgtttttgcaaatgaagagggtggtggctggtgttttgcagcggtttaaggtggttccggtggtggagaaaggggtggagccgatgtttatatcgtatttgacggccaagatgaaaggaggtttcccagttactatcgaagaaaggatgtagttgttgggtatgtagcaagaattgatgggaaatagaaggaaagagagtaatttgaaaagttgagaacttcaaaatcaaacttacagatactagagtggaataatttccttaagaggacactgtgagttgagtggacttgatcttcttccaaactaaaagattgtatcagtttctggtacgtttgttttaaatattttctaaaataaatttctgttcatcttgcttactgattcgacaaatttcaattacttcgtgtttctgaataatttattacaatcagtaattttggttttaattacacaatttggtaaacagtagtagtattatcatggacacaagttgaaaaaacaagtttattgtatgtgttcttaggttatttgctttttttataatattgatttgtattaattatatatgtagtctctgatctataattgtttgatcaacaaggttttcttagtaatatttgttagtgtttgccctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10266" stop="11681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10565" g_stop="11380" g_length="816"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="816" r_length="816" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11381" i_stop="11433" i_length="53">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11434" g_stop="11444" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="817" r_stop="827" r_length="11" r_score="0.455"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E733312" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10565" e_stop="11380"/>
          <exon e_start="11434" e_stop="11444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATCCTTACGCAATGGGAAGATCGGAGGAGATTTGGGGAAAAGACTGGGCGGAGTTCAAGCCAGAGAGATGGTTGAATAAGGATGAAATGACGGGGAATTGGATGTTTGTGGGAAAAGATCCATTCGCTTATCCTGTTTTTCAAGCAGGACCGCGAGTTTGCTTAGGGAAAGAAATGGCGTTTTTGCAAATGAAGAGGGTGGTGGCTGGTGTTTTGCAGCGGTTTAAGGTGGTTCCGGTGGTGGAGAAAGGGGTGGAGCCGATGTTTATATCGTATTTGACGGCCAAGATGAAAGGAGGTTTCCCAGTTACTATCGAAGAAAGGATGTAGTTGTTGGGTATGTAGCAAGAATTGATGGGAAATAGAAGGAAAGAGAGTAATTTGAAAAGTTGAGAACTTCAAAATCAAACTTACAGATATTAGAGTGGAATAATTTCCTTAAGAGGACACTGTGAGTTGAGTGGACTTGATCTTCTTCCAAACTAAAAGATTGTATCAGTTTCTGGTACGTTTGTTTTAAATATTTTCTAAAATAAATTTCTGTTCATCTTGCTTACTGATTCGACAAATTTCAATTACTTCGTGTTTCTGAATAATTTATTACAATCAGTAATTTTGGTTTTAATTACACAATTTGGTAAACAGTAGTAGTATTATCATGGACACAAGTTGAAAAAACAAGTTTATTGTATGTGTTCTTAGGTTATTTGCTTTTTTTATAATATTGATTTGTATTAATTATATATGTAGTCTCTGATCTATAATTGTTTGATCAACAAGGTTCTCTTAGTAATATTTGTTAGTGTTTGCCCTATTTTTTTTTGAAGTATTTATGTTTCAAAGTTATATGTATTGACTTGATGTAGCATTATAGGAA</genome_strand>
        <mrna_strand>CATCTTCCTTACGCAATGGGAAGATCGGAGGAGATTTGGGGAAAAGACTGGGCGGAGTTCAAGCCAGAGAGATGGTTGAATAAGGATGAAATGACGGGGAATTGGATGTTTGTGGGAAAAGATCCATTCGCTTATCCTGTTTTTCAAGCAGGACCGCGAGTTTGCTTAGGGAAAGAAATGGCGTTTTTGCAAATGAAGAGGGTGGTGGCTGGTGTTTTGCAGCGGTTTAAGGTGGTTCCGGTGGTGGAGAAAGGGGTGGAGCCGATGTTTATATCGTATTTGACGGCCAAGATGAAAGGAGGTTTCCCAGTTACTATCGAAGAAAGGATGTAGTTGTTGGGTATGTAGCAAGAATTGATGGGAAATAGAAGGAAAGAGAGTAATTTGAAAAGTTGAGAACTTCAAAATCAAACTTACAGATACTAGAGTGGAATAATTTCCTTAAGAGGACACTGTGAGTTGAGTGGACTTGATCTTCTTCCAAACTAAAAGATTGTATCAGTTTCTGGTACGTTTGTTTTAAATATTTTCTAAAATAAATTTCTGTTCATCTTGCTTACTGATTCGACAAATTTCAATTACTTCGTGTTTCTGAATAATTTATTACAATCAGTAATTTTGGTTTTAATTACACAATTTGGTAAACAGTAGTAGTATTATCATGGACACAAGTTGAAAAAACAAGTTTATTGTATGTGTTCTTAGGTTATTTGCTTTTTTTATAATATTGATTTGTATTAATTATATATGTAGTCTCTGATCTATAATTGTTTGATCAACAAGGTTTTCTTAGTAATATTTGTTAGTGTTTGCCCT.....................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288747" ref_strand="+" ref_description="SGN-E288747 [cLES-17-A23]">
      <seq>gagatttggggaaaagactgggcggagttcaagccagagagatggttgaataaggatgaaatgacggggaattggatgtttgtgggaaaagatccattcgcttatcctgtttttcaagcaggaccgcgagtttgcttagggaaagaaatggcgtttttgcaaatgaagagggtggtggctggtgttttgcagcggtttaaggtggttccggtggtggagaaaggggtggagccgatgtttatatcgtatttgacggccaacatgaaatgaggtttcccagttactatcctagaaaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10295" stop="11194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10595" g_stop="10894" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E288747" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10595" e_stop="10894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTTGGGGAAAAGACTGGGCGGAGTTCAAGCCAGAGAGATGGTTGAATAAGGATGAAATGACGGGGAATTGGATGTTTGTGGGAAAAGATCCATTCGCTTATCCTGTTTTTCAAGCAGGACCGCGAGTTTGCTTAGGGAAAGAAATGGCGTTTTTGCAAATGAAGAGGGTGGTGGCTGGTGTTTTGCAGCGGTTTAAGGTGGTTCCGGTGGTGGAGAAAGGGGTGGAGCCGATGTTTATATCGTATTTGACGGCCAAGATGAAAGGAGGTTTCCCAGTTACTATCGAAGAAAGGATG</genome_strand>
        <mrna_strand>GAGATTTGGGGAAAAGACTGGGCGGAGTTCAAGCCAGAGAGATGGTTGAATAAGGATGAAATGACGGGGAATTGGATGTTTGTGGGAAAAGATCCATTCGCTTATCCTGTTTTTCAAGCAGGACCGCGAGTTTGCTTAGGGAAAGAAATGGCGTTTTTGCAAATGAAGAGGGTGGTGGCTGGTGTTTTGCAGCGGTTTAAGGTGGTTCCGGTGGTGGAGAAAGGGGTGGAGCCGATGTTTATATCGTATTTGACGGCCAACATGAAATGAGGTTTCCCAGTTACTATCCTAGAAAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397657" ref_strand="+" ref_description="SGN-E397657 [TUS-46-C10]">
      <seq>agagatggttgaataaggatgaaatgacggggaattggatgtttgtgggaaaagatccattcgcttatcctgtttttcaagcaggaccgcgagtttgcttagggaaagaaatggcgtttttgcaaatgaagagggtggtggctggtgttttgcagcggtttaaggtggttccggtggtggagaaaggggtggagccgatgtttatatcgtatttgacggccaagatgaaaggaggtttcccagttactatcgaagaaaggatgtagttgttgggtatgtagcaagaattgatgggaaatagaacgaaagagagtaatttgaaaagttgagaacttcaaaatcaaacttacagatattagagtggaataatttccttaggaggacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10332" stop="11318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10632" g_stop="11018" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E397657" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10632" e_stop="11018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATGGTTGAATAAGGATGAAATGACGGGGAATTGGATGTTTGTGGGAAAAGATCCATTCGCTTATCCTGTTTTTCAAGCAGGACCGCGAGTTTGCTTAGGGAAAGAAATGGCGTTTTTGCAAATGAAGAGGGTGGTGGCTGGTGTTTTGCAGCGGTTTAAGGTGGTTCCGGTGGTGGAGAAAGGGGTGGAGCCGATGTTTATATCGTATTTGACGGCCAAGATGAAAGGAGGTTTCCCAGTTACTATCGAAGAAAGGATGTAGTTGTTGGGTATGTAGCAAGAATTGATGGGAAATAGAAGGAAAGAGAGTAATTTGAAAAGTTGAGAACTTCAAAATCAAACTTACAGATATTAGAGTGGAATAATTTCCTTAAGAGGACACT</genome_strand>
        <mrna_strand>AGAGATGGTTGAATAAGGATGAAATGACGGGGAATTGGATGTTTGTGGGAAAAGATCCATTCGCTTATCCTGTTTTTCAAGCAGGACCGCGAGTTTGCTTAGGGAAAGAAATGGCGTTTTTGCAAATGAAGAGGGTGGTGGCTGGTGTTTTGCAGCGGTTTAAGGTGGTTCCGGTGGTGGAGAAAGGGGTGGAGCCGATGTTTATATCGTATTTGACGGCCAAGATGAAAGGAGGTTTCCCAGTTACTATCGAAGAAAGGATGTAGTTGTTGGGTATGTAGCAAGAATTGATGGGAAATAGAACGAAAGAGAGTAATTTGAAAAGTTGAGAACTTCAAAATCAAACTTACAGATATTAGAGTGGAATAATTTCCTTAGGAGGACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237511" ref_strand="+" ref_description="SGN-E237511 [cLED-19-M2]">
      <seq>gagatggttgaataaggatgaaatgacggggaattggatgtttgtgggaaaagatccattcgcttatcctgtttttcaagcaggaccgcgagtttgcttagggaaagaaatggcgtttttgcaaatgaagagggtggtggctggtgttttgcagcgggttaaggtggttccggtggtggagaaaggggtggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10333" stop="11125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10633" g_stop="10825" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E237511" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>193</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10633" e_stop="10825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGGTTGAATAAGGATGAAATGACGGGGAATTGGATGTTTGTGGGAAAAGATCCATTCGCTTATCCTGTTTTTCAAGCAGGACCGCGAGTTTGCTTAGGGAAAGAAATGGCGTTTTTGCAAATGAAGAGGGTGGTGGCTGGTGTTTTGCAGCGGTTTAAGGTGGTTCCGGTGGTGGAGAAAGGGGTGGAG</genome_strand>
        <mrna_strand>GAGATGGTTGAATAAGGATGAAATGACGGGGAATTGGATGTTTGTGGGAAAAGATCCATTCGCTTATCCTGTTTTTCAAGCAGGACCGCGAGTTTGCTTAGGGAAAGAAATGGCGTTTTTGCAAATGAAGAGGGTGGTGGCTGGTGTTTTGCAGCGGGTTAAGGTGGTTCCGGTGGTGGAGAAAGGGGTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376518" ref_strand="+" ref_description="SGN-E376518 [TUS-17-F5](-)">
      <seq>aatgacggggaattggatgtttgtggaaaaagatccattcgcttatcctgtttttcaagcaggaccgcgagtttgcttagggaaagaaatggcgtttttgcaaatgaagagggtggtggctggtgttttgcagcggtttaaggtggttccggtggtggagaaaggggtggagccgatgtttatatcgtatttgacggccaagatgaaaggaggtttcccagttactatcgaagaaaggatgtagttgttgggtatgtagcaagaattgatgggaaatagaaggaaagagagtaatttgaaaagttgagaacttcaaaatcaaacttacagatattagagtggaataatttccttaagaggacactgtgagttgagtggacttgatcttcttccaaactaaaagattgtatcagtttctggtacgtttgttttaaatattttctaaaataaatttctgttcatcttgcttactgattcgacaaatttcaattacttcgtgtttctgaataatttattacaatcagtaattttggttttaattacacaatttggtaaacagtagtagtattatcatggacacaagttgaaaaaacaagtttattgtatgtgttcttaggttatttgctttttttataatattgatttgtattaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10354" stop="11612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10654" g_stop="11315" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E376518" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10654" e_stop="11315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGACGGGGAATTGGATGTTTGTGGGAAAAGATCCATTCGCTTATCCTGTTTTTCAAGCAGGACCGCGAGTTTGCTTAGGGAAAGAAATGGCGTTTTTGCAAATGAAGAGGGTGGTGGCTGGTGTTTTGCAGCGGTTTAAGGTGGTTCCGGTGGTGGAGAAAGGGGTGGAGCCGATGTTTATATCGTATTTGACGGCCAAGATGAAAGGAGGTTTCCCAGTTACTATCGAAGAAAGGATGTAGTTGTTGGGTATGTAGCAAGAATTGATGGGAAATAGAAGGAAAGAGAGTAATTTGAAAAGTTGAGAACTTCAAAATCAAACTTACAGATATTAGAGTGGAATAATTTCCTTAAGAGGACACTGTGAGTTGAGTGGACTTGATCTTCTTCCAAACTAAAAGATTGTATCAGTTTCTGGTACGTTTGTTTTAAATATTTTCTAAAATAAATTTCTGTTCATCTTGCTTACTGATTCGACAAATTTCAATTACTTCGTGTTTCTGAATAATTTATTACAATCAGTAATTTTGGTTTTAATTACACAATTTGGTAAACAGTAGTAGTATTATCATGGACACAAGTTGAAAAAACAAGTTTATTGTATGTGTTCTTAGGTTATTTGCTTTTTTTATAATATTGATTTGTATTAATTATATATGT</genome_strand>
        <mrna_strand>AATGACGGGGAATTGGATGTTTGTGGAAAAAGATCCATTCGCTTATCCTGTTTTTCAAGCAGGACCGCGAGTTTGCTTAGGGAAAGAAATGGCGTTTTTGCAAATGAAGAGGGTGGTGGCTGGTGTTTTGCAGCGGTTTAAGGTGGTTCCGGTGGTGGAGAAAGGGGTGGAGCCGATGTTTATATCGTATTTGACGGCCAAGATGAAAGGAGGTTTCCCAGTTACTATCGAAGAAAGGATGTAGTTGTTGGGTATGTAGCAAGAATTGATGGGAAATAGAAGGAAAGAGAGTAATTTGAAAAGTTGAGAACTTCAAAATCAAACTTACAGATATTAGAGTGGAATAATTTCCTTAAGAGGACACTGTGAGTTGAGTGGACTTGATCTTCTTCCAAACTAAAAGATTGTATCAGTTTCTGGTACGTTTGTTTTAAATATTTTCTAAAATAAATTTCTGTTCATCTTGCTTACTGATTCGACAAATTTCAATTACTTCGTGTTTCTGAATAATTTATTACAATCAGTAATTTTGGTTTTAATTACACAATTTGGTAAACAGTAGTAGTATTATCATGGACACAAGTTGAAAAAACAAGTTTATTGTATGTGTTCTTAGGTTATTTGCTTTTTTTATAATATTGATTTGTATTAATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258200" ref_strand="+" ref_description="SGN-E258200 [cLEG-49-O20]">
      <seq>tttttaacagaaatttattttagaaaatatttaaaacaaacgtaccagaaactgatacaatcttttagtttggaagaagatcaagtccactcaactcacagtgtcctcttaaggaaattattccactctaatatctgtaagtttgattttgaagttctcaacttttcaaattactctctttccttctatttcccatcaattcttgctacatacccaacaactacatcctttcttcgatagtaactgggaaacctcctttcatcttggccgtcaaatacgatataaacatcggctccacccctttctccaccaccggaaccacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="11414" stop="10493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11117" g_stop="10793" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E258200" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11117" e_stop="10793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGAACAGAAATTTATTTTAGAAAATATTTAAAACAAACGTACCAGAAACTGATACAATCTTTTAGTTTGGAAGAAGATCAAGTCCACTCAACTCACAGTGTCCTCTTAAGGAAATTATTCCACTCTAATATCTGTAAGTTTGATTTTGAAGTTCTCAACTTTTCAAATTACTCTCTTTCCTTCTATTTCCCATCAATTCTTGCTACATACCCAACAACTACATCCTTTCTTCGATAGTAACTGGGAAACCTCCTTTCATCTTGGCCGTCAAATACGATATAAACATCGGCTCCACCCCTTTCTCCACCACCGGAACCACCTT</genome_strand>
        <mrna_strand>TTTTTAACAGAAATTTATTTTAGAAAATATTTAAAACAAACGTACCAGAAACTGATACAATCTTTTAGTTTGGAAGAAGATCAAGTCCACTCAACTCACAGTGTCCTCTTAAGGAAATTATTCCACTCTAATATCTGTAAGTTTGATTTTGAAGTTCTCAACTTTTCAAATTACTCTCTTTCCTTCTATTTCCCATCAATTCTTGCTACATACCCAACAACTACATCCTTTCTTCGATAGTAACTGGGAAACCTCCTTTCATCTTGGCCGTCAAATACGATATAAACATCGGCTCCACCCCTTTCTCCACCACCGGAACCACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257589" ref_strand="+" ref_description="SGN-E257589 [cLEG-45-B13]">
      <seq>aacagaaatttattttagaaaatatttaaaacaaacgtaccagaaactgatacaatcttttagtttggaagaagatcaagtccactcaactcacagtgtcctcttaaggaaattattccactctaatatctgtaagtttgattttgaagttctcaacttttcaaattactctctttccttctatttcccatcaattcttgctacatacccaacaactacatcctttcttcgatagtaactgggaaaacctcctttcatcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="11412" stop="10551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11112" g_stop="10851" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E257589" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>262</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11112" e_stop="10851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGAAATTTATTTTAGAAAATATTTAAAACAAACGTACCAGAAACTGATACAATCTTTTAGTTTGGAAGAAGATCAAGTCCACTCAACTCACAGTGTCCTCTTAAGGAAATTATTCCACTCTAATATCTGTAAGTTTGATTTTGAAGTTCTCAACTTTTCAAATTACTCTCTTTCCTTCTATTTCCCATCAATTCTTGCTACATACCCAACAACTACATCCTTTCTTCGATAGTAACTGGG-AAACCTCCTTTCATCTTGG</genome_strand>
        <mrna_strand>AACAGAAATTTATTTTAGAAAATATTTAAAACAAACGTACCAGAAACTGATACAATCTTTTAGTTTGGAAGAAGATCAAGTCCACTCAACTCACAGTGTCCTCTTAAGGAAATTATTCCACTCTAATATCTGTAAGTTTGATTTTGAAGTTCTCAACTTTTCAAATTACTCTCTTTCCTTCTATTTCCCATCAATTCTTGCTACATACCCAACAACTACATCCTTTCTTCGATAGTAACTGGGAAAACCTCCTTTCATCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269542" ref_strand="-" ref_description="SGN-E269542 [cLEM-2-K13]">
      <seq>gaaaggaggtttcccagttactatcgaagaaaggatgtagttgttgggtatgtagcaagaattgatgggaaatagaaggaaagagagtaatttgaaaagttgagaacttcaaaatcaaacttacagatattagagtggaataatttccttaagaggacactgtgagttgagtggacttgatcttcttccaaactaaaagattgtatcagtttctggtacgtttgttttaaatattttctaaaataaatttctgttcatcttgcttactgattcgacaaatttcaattacttcgtgtttctgaataatttattacaatcagtaattttggttttaattacacaatttggtaaacagtagtagtattatcatggacacaagttgaaaaaacaagtttattgtatgtgttcttaggttatttgctttttttataatattgatttgtattaattccaaaaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="10558" stop="11612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10858" g_stop="11307" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="453" polyA_stop="478"/>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E269542" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269542" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10858" e_stop="11307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGAGGTTTCCCAGTTACTATCGAAGAAAGGATGTAGTTGTTGGGTATGTAGCAAGAATTGATGGGAAATAGAAGGAAAGAGAGTAATTTGAAAAGTTGAGAACTTCAAAATCAAACTTACAGATATTAGAGTGGAATAATTTCCTTAAGAGGACACTGTGAGTTGAGTGGACTTGATCTTCTTCCAAACTAAAAGATTGTATCAGTTTCTGGTACGTTTGTTTTAAATATTTTCTAAAATAAATTTCTGTTCATCTTGCTTACTGATTCGACAAATTTCAATTACTTCGTGTTTCTGAATAATTTATTACAATCAGTAATTTTGGTTTTAATTACACAATTTGGTAAACAGTAGTAGTATTATCATGGACACAAGTTGAAAAAACAAGTTTATTGTATGTGTTCTTAGGTTATTTGCTTTTTTTATAATATTGATTTGTATTAATT</genome_strand>
        <mrna_strand>GAAAGGAGGTTTCCCAGTTACTATCGAAGAAAGGATGTAGTTGTTGGGTATGTAGCAAGAATTGATGGGAAATAGAAGGAAAGAGAGTAATTTGAAAAGTTGAGAACTTCAAAATCAAACTTACAGATATTAGAGTGGAATAATTTCCTTAAGAGGACACTGTGAGTTGAGTGGACTTGATCTTCTTCCAAACTAAAAGATTGTATCAGTTTCTGGTACGTTTGTTTTAAATATTTTCTAAAATAAATTTCTGTTCATCTTGCTTACTGATTCGACAAATTTCAATTACTTCGTGTTTCTGAATAATTTATTACAATCAGTAATTTTGGTTTTAATTACACAATTTGGTAAACAGTAGTAGTATTATCATGGACACAAGTTGAAAAAACAAGTTTATTGTATGTGTTCTTAGGTTATTTGCTTTTTTTATAATATTGATTTGTATTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689356" ref_strand="+" ref_description="SGN-E689356 [t3_tus_84_F07]">
      <seq>atgcccgtgattttctccgacaatactatacgctttgtcacttgtacctaaatcttttaactcaaatcactccgtttaacccgacaaaaccctctttccttaaaaaaaaatcagtactaattactcattaatctttgagatttgcatttactttcatttattttgagtgaatggtagctagttgatacagaaattagttggattgagagaaaaaaatgatgggttttttgatgagaaaagatgtgaggaagctactcaagaggaaggatagtgatgctggtgaaaaaggaagagcattggaggaggcacgagcgtccttgtttagcaaattacgagcatttggaggtgggaagcgccaacaaactaccttatgggggcctactgttgcattgacattcaatttttttgtttctgttagtattatcttgatgaacaaattggttcttgttacagtcggatttaactatccaattttcctctctttcctgcattatgtctgtagctggttgataatggctattcttaatgctctctccatcctttccttgtctacaccatcaaaatcgacaaaatattcatcgttgttgtctcttggtatagttatgtcactttctactgggcttgcaaatgtgagcttgaagtataatagtgtaggattttaccagatgggaaagattgcagtaacaccagctatcgttttagctgaatttgttctctttcggaaaaaaatttctttcctaaaggtgcttgcactcactgttgtatcaataggtgttgctgttgctacggaaacaaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="27218" stop="24399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26918" g_stop="26631" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26630" i_stop="25641" i_length="990">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25640" g_stop="25489" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="440" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25488" i_stop="25402" i_length="87">
            <donor d_prob="0.450" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25401" g_stop="25193" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="649" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25192" i_stop="25110" i_length="83">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.570" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25109" g_stop="25016" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="743" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25015" i_stop="24755" i_length="261">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.942" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24754" g_stop="24698" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="800" r_length="57" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E689356" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26918" e_stop="26631"/>
          <exon e_start="25640" e_stop="25489"/>
          <exon e_start="25401" e_stop="25193"/>
          <exon e_start="25109" e_stop="25016"/>
          <exon e_start="24754" e_stop="24698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCCGTGATTTTCTCCGACAATACTATACGCTTTGTCACTTGTACCTAAATCTTTTAACTCAAATCACTCCGTTTAACCCGACAAAACCCTCTTTCCTTAAAAAAAAATCAGTACTAATTACTCATTAATCTTTGAGATTTGCATTTACTTTCATTTATTTTGAGTGAATGGTAGCTAGTTGATACAGAAATTAGTTGGATTGAGAGAAAAAAATGATGGGTTTTTTGATGAGAAAAGATGTGAGGAAGCTACTCAAGAGGAAGGATAGTGATGCTGGTGAAAAAGGTACTTAATTGCTTCAAGATTTAGTTTTTTTCCCTTTTTTTCTTTGTGGGGTTTTGGTAAAATGTGTAAAGGTGTAATCTTTTTTTTTGCATTATGTTATTGAGGGATTTGGTTGTTATTGGGTAATTGGATGTTTCTATGGATTCTTGGTGTTTAAAGTCTTGCCATTTCTGTTAATCTTTCTGTTGTTACTAGCTGTTGTTTTGATTCATTACCAACTTATTAATCTAGAAATTTTAGGAATTGGGAGGAGAAATTTGTAATGCTTCATATGTTTAGCTCAATAATGGTGTGGCTCAGTACTCAATGAGGTGGTTAGGAATCTTGAGGTCTCTGGTTTAAAACTCAATGGAGAGATAACAAACACTAGGTGATTCTGTTGCCGGTGGAGGTGACATGTATCTCATGGAATTAGTCTAGGTAGGTGGCACATATCCCGTGGAATTAGTCTAGGATAGAGTTACTTGAGAGGTGTGTATCTCGTGGAATAGTCTAGGACAGAGTTACCTGAGAGGCGGCATGTATATCCCGTCGAATTAGTCTAGGACAGAGTTACCTGGGAGGTGATGTGTATCTCGTGGAATTAGTCTTGGACAGAGTTATGTGGTTTATGTTGCTGGTGGGAGGTGGTGGCAGTATCTCGTGGAATTAGTGGAGGTGCGAGAAAGCTGTCCATATGTTAGCAACCAATTGTGATATATGTTTGCAATTGACTATATTCCATAACTTCACCTTTGCTCCTGTCAAGTCACTGTATTCACAAATTCTTCGATTGAGCTAACTATACTAATACTTATCGATGGTTTTCCTCTGCACTTAAAAGGCCAAACTTTATCAAATACGTAAGCTCTTTCTACGAGATGTTTGATGTTCATGGTCTAGTAGTAGTCTATTGTTCAACATTCCGGAAGGTATCGGGAAGGATTTGGAATGGAATAATAATGATTCATACGGAAGAAAAGATTTCCTATGTTCCTTTTGTTGGTGCAGGAAGAGCATTGGAGGAGGCACGAGCGTCCTTGTTTAGCAAATTACGAGCATTTGGAGGTGGGAAGCGCCAACAAACTACCTTATGGGGGCCTACTGTTGCATTGACATTCAATTTTTTTGTTTCTGTTAGTATTATCTTGATGAACAAATTGGTCAGTCTACTTAACCTTACTCTATCTGAAAGTAGATATTAAATCTTTTAGAGATCGTAACATTTGCTTTCCTCTTTTCTCTTCCAGGTTCTTGTTACAGTCGGATTTAACTATCCAATTTTCCTCTCTTTCCTGCATTATGTCTGTAGCTGGTTGATAATGGCTATTCTTAATGCTCTCTCCATCCTTTCCTTGTCTACACCATCAAAATCGACAAAATATTCATCGTTGTTGTCTCTTGGTATAGTTATGTCACTTTCTACTGGGCTTGCAAATGTGAGCTTGAAGTATAATAGGTGAGACTTATGGTAATCTTTTCTCCTCTGAAATCTTAACAGGTCTTCTTTCTTGATAGTTAACAAGCACGATATATTTCCAGTGTAGGATTTTACCAGATGGCAAAGATTGCAGTAACACCAGCTATCGTTTTAGCTGAATTTGTTCTCTTTCGGAAGAAAATTTCTTTCCTAAAGGTAACTGCTTCTTACTGCTAATATACAGTGTATGCTGGTAGCCTAGTTGAGAGCTAGGTTTAGTTTCTTTATGCATTGTGTTTCGTTTCCATATGCCGTTAGAATTCTCGGGAAAGTTTCCTACCTTGTACTTTGAGTATGTGTGAGTATGCCTTTTATGATAACCGATTACTATGGTCAGTTTATTCAACACAATGATTTCCGTTTGGTCCGTCTGCATCTCCCTTGATAAGAATATTGATCCGTACCCTTATGTTTCAGGTGCTTGCACTCACTGTTGTATCAGTAGGTGTTGCTGTTGCTACGGTAACAGATTTG</genome_strand>
        <mrna_strand>ATGCCCGTGATTTTCTCCGACAATACTATACGCTTTGTCACTTGTACCTAAATCTTTTAACTCAAATCACTCCGTTTAACCCGACAAAACCCTCTTTCCTTAAAAAAAAATCAGTACTAATTACTCATTAATCTTTGAGATTTGCATTTACTTTCATTTATTTTGAGTGAATGGTAGCTAGTTGATACAGAAATTAGTTGGATTGAGAGAAAAAAATGATGGGTTTTTTGATGAGAAAAGATGTGAGGAAGCTACTCAAGAGGAAGGATAGTGATGCTGGTGAAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCATTGGAGGAGGCACGAGCGTCCTTGTTTAGCAAATTACGAGCATTTGGAGGTGGGAAGCGCCAACAAACTACCTTATGGGGGCCTACTGTTGCATTGACATTCAATTTTTTTGTTTCTGTTAGTATTATCTTGATGAACAAATTG.......................................................................................GTTCTTGTTACAGTCGGATTTAACTATCCAATTTTCCTCTCTTTCCTGCATTATGTCTGTAGCTGGTTGATAATGGCTATTCTTAATGCTCTCTCCATCCTTTCCTTGTCTACACCATCAAAATCGACAAAATATTCATCGTTGTTGTCTCTTGGTATAGTTATGTCACTTTCTACTGGGCTTGCAAATGTGAGCTTGAAGTATAATAG...................................................................................TGTAGGATTTTACCAGATGGGAAAGATTGCAGTAACACCAGCTATCGTTTTAGCTGAATTTGTTCTCTTTCGGAAAAAAATTTCTTTCCTAAAG.....................................................................................................................................................................................................................................................................GTGCTTGCACTCACTGTTGTATCAATAGGTGTTGCTGTTGCTACGGAAACAAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330284" ref_strand="+" ref_description="SGN-E330284 [cTOD-4-H21]">
      <seq>gaaaaaaatgatgggttttttgatgagaaaagatgtgaggaagctactcaagaggaaggatagtgatgctggtgaaaaaggaagagcattggaggaggcacgagcgtccttgtttagcaaattacgagcatttggaggtgggaagcgccaacaaactaccttatgggggcctactgttgcattgacattcaatttttttgtttctgttagtattatcttgatgaacaaattggttcttgttacagtcggatttaactatccaattttcctctctttcctgcattatgtctgtagctggttgataatggctattcttaatgctctctccatcctttccttgtctacaccatcaaaatcgacaaaatattcatcgttgttgtctcttggtatagttatgtcactttctactgggcttgcaaatgtgagcttgaagtataatagtgtaggattttaccagatggcaaagattgcagtaacaccagctatcgttttagctgaatttgttctctttcggaagaaaatttctttcctaaaggtgcttgcactcactgttgtatcagtaggtgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="27010" stop="24421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26710" g_stop="26631" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26630" i_stop="25641" i_length="990">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25640" g_stop="25489" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="232" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25488" i_stop="25402" i_length="87">
            <donor d_prob="0.450" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25401" g_stop="25193" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="441" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25192" i_stop="25110" i_length="83">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.570" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25109" g_stop="25016" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="535" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25015" i_stop="24755" i_length="261">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24754" g_stop="24721" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="569" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E330284" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26710" e_stop="26631"/>
          <exon e_start="25640" e_stop="25489"/>
          <exon e_start="25401" e_stop="25193"/>
          <exon e_start="25109" e_stop="25016"/>
          <exon e_start="24754" e_stop="24721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAATGATGGGTTTTTTGATGAGAAAAGATGTGAGGAAGCTACTCAAGAGGAAGGATAGTGATGCTGGTGAAAAAGGTACTTAATTGCTTCAAGATTTAGTTTTTTTCCCTTTTTTTCTTTGTGGGGTTTTGGTAAAATGTGTAAAGGTGTAATCTTTTTTTTTGCATTATGTTATTGAGGGATTTGGTTGTTATTGGGTAATTGGATGTTTCTATGGATTCTTGGTGTTTAAAGTCTTGCCATTTCTGTTAATCTTTCTGTTGTTACTAGCTGTTGTTTTGATTCATTACCAACTTATTAATCTAGAAATTTTAGGAATTGGGAGGAGAAATTTGTAATGCTTCATATGTTTAGCTCAATAATGGTGTGGCTCAGTACTCAATGAGGTGGTTAGGAATCTTGAGGTCTCTGGTTTAAAACTCAATGGAGAGATAACAAACACTAGGTGATTCTGTTGCCGGTGGAGGTGACATGTATCTCATGGAATTAGTCTAGGTAGGTGGCACATATCCCGTGGAATTAGTCTAGGATAGAGTTACTTGAGAGGTGTGTATCTCGTGGAATAGTCTAGGACAGAGTTACCTGAGAGGCGGCATGTATATCCCGTCGAATTAGTCTAGGACAGAGTTACCTGGGAGGTGATGTGTATCTCGTGGAATTAGTCTTGGACAGAGTTATGTGGTTTATGTTGCTGGTGGGAGGTGGTGGCAGTATCTCGTGGAATTAGTGGAGGTGCGAGAAAGCTGTCCATATGTTAGCAACCAATTGTGATATATGTTTGCAATTGACTATATTCCATAACTTCACCTTTGCTCCTGTCAAGTCACTGTATTCACAAATTCTTCGATTGAGCTAACTATACTAATACTTATCGATGGTTTTCCTCTGCACTTAAAAGGCCAAACTTTATCAAATACGTAAGCTCTTTCTACGAGATGTTTGATGTTCATGGTCTAGTAGTAGTCTATTGTTCAACATTCCGGAAGGTATCGGGAAGGATTTGGAATGGAATAATAATGATTCATACGGAAGAAAAGATTTCCTATGTTCCTTTTGTTGGTGCAGGAAGAGCATTGGAGGAGGCACGAGCGTCCTTGTTTAGCAAATTACGAGCATTTGGAGGTGGGAAGCGCCAACAAACTACCTTATGGGGGCCTACTGTTGCATTGACATTCAATTTTTTTGTTTCTGTTAGTATTATCTTGATGAACAAATTGGTCAGTCTACTTAACCTTACTCTATCTGAAAGTAGATATTAAATCTTTTAGAGATCGTAACATTTGCTTTCCTCTTTTCTCTTCCAGGTTCTTGTTACAGTCGGATTTAACTATCCAATTTTCCTCTCTTTCCTGCATTATGTCTGTAGCTGGTTGATAATGGCTATTCTTAATGCTCTCTCCATCCTTTCCTTGTCTACACCATCAAAATCGACAAAATATTCATCGTTGTTGTCTCTTGGTATAGTTATGTCACTTTCTACTGGGCTTGCAAATGTGAGCTTGAAGTATAATAGGTGAGACTTATGGTAATCTTTTCTCCTCTGAAATCTTAACAGGTCTTCTTTCTTGATAGTTAACAAGCACGATATATTTCCAGTGTAGGATTTTACCAGATGGCAAAGATTGCAGTAACACCAGCTATCGTTTTAGCTGAATTTGTTCTCTTTCGGAAGAAAATTTCTTTCCTAAAGGTAACTGCTTCTTACTGCTAATATACAGTGTATGCTGGTAGCCTAGTTGAGAGCTAGGTTTAGTTTCTTTATGCATTGTGTTTCGTTTCCATATGCCGTTAGAATTCTCGGGAAAGTTTCCTACCTTGTACTTTGAGTATGTGTGAGTATGCCTTTTATGATAACCGATTACTATGGTCAGTTTATTCAACACAATGATTTCCGTTTGGTCCGTCTGCATCTCCCTTGATAAGAATATTGATCCGTACCCTTATGTTTCAGGTGCTTGCACTCACTGTTGTATCAGTAGGTGTTG</genome_strand>
        <mrna_strand>GAAAAAAATGATGGGTTTTTTGATGAGAAAAGATGTGAGGAAGCTACTCAAGAGGAAGGATAGTGATGCTGGTGAAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCATTGGAGGAGGCACGAGCGTCCTTGTTTAGCAAATTACGAGCATTTGGAGGTGGGAAGCGCCAACAAACTACCTTATGGGGGCCTACTGTTGCATTGACATTCAATTTTTTTGTTTCTGTTAGTATTATCTTGATGAACAAATTG.......................................................................................GTTCTTGTTACAGTCGGATTTAACTATCCAATTTTCCTCTCTTTCCTGCATTATGTCTGTAGCTGGTTGATAATGGCTATTCTTAATGCTCTCTCCATCCTTTCCTTGTCTACACCATCAAAATCGACAAAATATTCATCGTTGTTGTCTCTTGGTATAGTTATGTCACTTTCTACTGGGCTTGCAAATGTGAGCTTGAAGTATAATAG...................................................................................TGTAGGATTTTACCAGATGGCAAAGATTGCAGTAACACCAGCTATCGTTTTAGCTGAATTTGTTCTCTTTCGGAAGAAAATTTCTTTCCTAAAG.....................................................................................................................................................................................................................................................................GTGCTTGCACTCACTGTTGTATCAGTAGGTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332570" ref_strand="+" ref_description="SGN-E332570 [cTOD-18-A18]">
      <seq>tgcccgtgattttctccgacaatactatacgctttgtcacttgtacctaaatcttttaactcaaatcactccgtttaacccgacaaaaccctctttccttaaaaaaaaatcagtactaattactcattaatctttgagatttgcatttactttcatttattttgagtgaatggtagctagttgatacagaaattagttggattgagagaaaaaaatgatgggttttttgatgagaaaagatgtgaggaagctactcaagaggaaggatagtgatgctggtgaaaaaggaagagcattggaggaggcacgagcgtccttgtttagcaaattacgagcatttggaggtgggaagcgccaacaaactaccttatgggggcctactgttgcattgacattcaatttttttgtttctgttagtattatcttgatgaacaaattggttcttgttacagtcggatttaactatccaattttcctctctttcctgcattatgtctgtagctggttgataatggctattcttaatgctctctccatcctttccttgtctacaccatcaaaatcgacaaaatattcatcgttgttgtctcttggtatagttatgtcactttctactgggcttgcaaatgtgagcttgaagtataatagtgtaggattttaccagatggcaaagattgcagtaacaccagctatcgttttagctgaatttgttctcttttcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="27217" stop="24736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26917" g_stop="26631" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26630" i_stop="25641" i_length="990">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25640" g_stop="25489" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="439" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25488" i_stop="25402" i_length="87">
            <donor d_prob="0.450" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25401" g_stop="25193" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="648" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25192" i_stop="25110" i_length="83">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.570" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25109" g_stop="25036" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="723" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E332570" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26917" e_stop="26631"/>
          <exon e_start="25640" e_stop="25489"/>
          <exon e_start="25401" e_stop="25193"/>
          <exon e_start="25109" e_stop="25036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCGTGATTTTCTCCGACAATACTATACGCTTTGTCACTTGTACCTAAATCTTTTAACTCAAATCACTCCGTTTAACCCGACAAAACCCTCTTTCCTTAAAAAAAAATCAGTACTAATTACTCATTAATCTTTGAGATTTGCATTTACTTTCATTTATTTTGAGTGAATGGTAGCTAGTTGATACAGAAATTAGTTGGATTGAGAGAAAAAAATGATGGGTTTTTTGATGAGAAAAGATGTGAGGAAGCTACTCAAGAGGAAGGATAGTGATGCTGGTGAAAAAGGTACTTAATTGCTTCAAGATTTAGTTTTTTTCCCTTTTTTTCTTTGTGGGGTTTTGGTAAAATGTGTAAAGGTGTAATCTTTTTTTTTGCATTATGTTATTGAGGGATTTGGTTGTTATTGGGTAATTGGATGTTTCTATGGATTCTTGGTGTTTAAAGTCTTGCCATTTCTGTTAATCTTTCTGTTGTTACTAGCTGTTGTTTTGATTCATTACCAACTTATTAATCTAGAAATTTTAGGAATTGGGAGGAGAAATTTGTAATGCTTCATATGTTTAGCTCAATAATGGTGTGGCTCAGTACTCAATGAGGTGGTTAGGAATCTTGAGGTCTCTGGTTTAAAACTCAATGGAGAGATAACAAACACTAGGTGATTCTGTTGCCGGTGGAGGTGACATGTATCTCATGGAATTAGTCTAGGTAGGTGGCACATATCCCGTGGAATTAGTCTAGGATAGAGTTACTTGAGAGGTGTGTATCTCGTGGAATAGTCTAGGACAGAGTTACCTGAGAGGCGGCATGTATATCCCGTCGAATTAGTCTAGGACAGAGTTACCTGGGAGGTGATGTGTATCTCGTGGAATTAGTCTTGGACAGAGTTATGTGGTTTATGTTGCTGGTGGGAGGTGGTGGCAGTATCTCGTGGAATTAGTGGAGGTGCGAGAAAGCTGTCCATATGTTAGCAACCAATTGTGATATATGTTTGCAATTGACTATATTCCATAACTTCACCTTTGCTCCTGTCAAGTCACTGTATTCACAAATTCTTCGATTGAGCTAACTATACTAATACTTATCGATGGTTTTCCTCTGCACTTAAAAGGCCAAACTTTATCAAATACGTAAGCTCTTTCTACGAGATGTTTGATGTTCATGGTCTAGTAGTAGTCTATTGTTCAACATTCCGGAAGGTATCGGGAAGGATTTGGAATGGAATAATAATGATTCATACGGAAGAAAAGATTTCCTATGTTCCTTTTGTTGGTGCAGGAAGAGCATTGGAGGAGGCACGAGCGTCCTTGTTTAGCAAATTACGAGCATTTGGAGGTGGGAAGCGCCAACAAACTACCTTATGGGGGCCTACTGTTGCATTGACATTCAATTTTTTTGTTTCTGTTAGTATTATCTTGATGAACAAATTGGTCAGTCTACTTAACCTTACTCTATCTGAAAGTAGATATTAAATCTTTTAGAGATCGTAACATTTGCTTTCCTCTTTTCTCTTCCAGGTTCTTGTTACAGTCGGATTTAACTATCCAATTTTCCTCTCTTTCCTGCATTATGTCTGTAGCTGGTTGATAATGGCTATTCTTAATGCTCTCTCCATCCTTTCCTTGTCTACACCATCAAAATCGACAAAATATTCATCGTTGTTGTCTCTTGGTATAGTTATGTCACTTTCTACTGGGCTTGCAAATGTGAGCTTGAAGTATAATAGGTGAGACTTATGGTAATCTTTTCTCCTCTGAAATCTTAACAGGTCTTCTTTCTTGATAGTTAACAAGCACGATATATTTCCAGTGTAGGATTTTACCAGATGGCAAAGATTGCAGTAACACCAGCTATCGTTTTAGCTGAATTTGTTCTC-TTTCGGA</genome_strand>
        <mrna_strand>TGCCCGTGATTTTCTCCGACAATACTATACGCTTTGTCACTTGTACCTAAATCTTTTAACTCAAATCACTCCGTTTAACCCGACAAAACCCTCTTTCCTTAAAAAAAAATCAGTACTAATTACTCATTAATCTTTGAGATTTGCATTTACTTTCATTTATTTTGAGTGAATGGTAGCTAGTTGATACAGAAATTAGTTGGATTGAGAGAAAAAAATGATGGGTTTTTTGATGAGAAAAGATGTGAGGAAGCTACTCAAGAGGAAGGATAGTGATGCTGGTGAAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCATTGGAGGAGGCACGAGCGTCCTTGTTTAGCAAATTACGAGCATTTGGAGGTGGGAAGCGCCAACAAACTACCTTATGGGGGCCTACTGTTGCATTGACATTCAATTTTTTTGTTTCTGTTAGTATTATCTTGATGAACAAATTG.......................................................................................GTTCTTGTTACAGTCGGATTTAACTATCCAATTTTCCTCTCTTTCCTGCATTATGTCTGTAGCTGGTTGATAATGGCTATTCTTAATGCTCTCTCCATCCTTTCCTTGTCTACACCATCAAAATCGACAAAATATTCATCGTTGTTGTCTCTTGGTATAGTTATGTCACTTTCTACTGGGCTTGCAAATGTGAGCTTGAAGTATAATAG...................................................................................TGTAGGATTTTACCAGATGGCAAAGATTGCAGTAACACCAGCTATCGTTTTAGCTGAATTTGTTCTCTTTTCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330378" ref_strand="+" ref_description="SGN-E330378 [cTOD-4-I9]">
      <seq>agagaaaaaaatgatgggttttttgatgagaaaagatgtgaggaagctactcaagaggaaggatagtgatgctggtgaaaaaggaagagcattggaggaggcacgagcgtccttgtttagcaaattacgagcatttggaggtgggaagcgccaacaaactaccttatgggggcctactgttgcattgacattcaatttttttgtttctgttagtattatcttgatgaacaaattggttcttgttacagtcggatttaactatccaattttcctctctttcctgcattatgtctgtagctggttgataatggctattcttaatgctctctccatcctttccttgtctacaccatcaaaatcgacaaaatattcatcgttgttgtctcttggtatagttatgtcactttctactgggcttgcaaatgtgagcttgaagtataatagtgtaggattttaccagatggcaaagattgcagtaacaccagctatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="27013" stop="24763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26713" g_stop="26631" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26630" i_stop="25641" i_length="990">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25640" g_stop="25489" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="235" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25488" i_stop="25402" i_length="87">
            <donor d_prob="0.450" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25401" g_stop="25193" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="444" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25192" i_stop="25110" i_length="83">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.570" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25109" g_stop="25063" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="491" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E330378" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26713" e_stop="26631"/>
          <exon e_start="25640" e_stop="25489"/>
          <exon e_start="25401" e_stop="25193"/>
          <exon e_start="25109" e_stop="25063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAAAAATGATGGGTTTTTTGATGAGAAAAGATGTGAGGAAGCTACTCAAGAGGAAGGATAGTGATGCTGGTGAAAAAGGTACTTAATTGCTTCAAGATTTAGTTTTTTTCCCTTTTTTTCTTTGTGGGGTTTTGGTAAAATGTGTAAAGGTGTAATCTTTTTTTTTGCATTATGTTATTGAGGGATTTGGTTGTTATTGGGTAATTGGATGTTTCTATGGATTCTTGGTGTTTAAAGTCTTGCCATTTCTGTTAATCTTTCTGTTGTTACTAGCTGTTGTTTTGATTCATTACCAACTTATTAATCTAGAAATTTTAGGAATTGGGAGGAGAAATTTGTAATGCTTCATATGTTTAGCTCAATAATGGTGTGGCTCAGTACTCAATGAGGTGGTTAGGAATCTTGAGGTCTCTGGTTTAAAACTCAATGGAGAGATAACAAACACTAGGTGATTCTGTTGCCGGTGGAGGTGACATGTATCTCATGGAATTAGTCTAGGTAGGTGGCACATATCCCGTGGAATTAGTCTAGGATAGAGTTACTTGAGAGGTGTGTATCTCGTGGAATAGTCTAGGACAGAGTTACCTGAGAGGCGGCATGTATATCCCGTCGAATTAGTCTAGGACAGAGTTACCTGGGAGGTGATGTGTATCTCGTGGAATTAGTCTTGGACAGAGTTATGTGGTTTATGTTGCTGGTGGGAGGTGGTGGCAGTATCTCGTGGAATTAGTGGAGGTGCGAGAAAGCTGTCCATATGTTAGCAACCAATTGTGATATATGTTTGCAATTGACTATATTCCATAACTTCACCTTTGCTCCTGTCAAGTCACTGTATTCACAAATTCTTCGATTGAGCTAACTATACTAATACTTATCGATGGTTTTCCTCTGCACTTAAAAGGCCAAACTTTATCAAATACGTAAGCTCTTTCTACGAGATGTTTGATGTTCATGGTCTAGTAGTAGTCTATTGTTCAACATTCCGGAAGGTATCGGGAAGGATTTGGAATGGAATAATAATGATTCATACGGAAGAAAAGATTTCCTATGTTCCTTTTGTTGGTGCAGGAAGAGCATTGGAGGAGGCACGAGCGTCCTTGTTTAGCAAATTACGAGCATTTGGAGGTGGGAAGCGCCAACAAACTACCTTATGGGGGCCTACTGTTGCATTGACATTCAATTTTTTTGTTTCTGTTAGTATTATCTTGATGAACAAATTGGTCAGTCTACTTAACCTTACTCTATCTGAAAGTAGATATTAAATCTTTTAGAGATCGTAACATTTGCTTTCCTCTTTTCTCTTCCAGGTTCTTGTTACAGTCGGATTTAACTATCCAATTTTCCTCTCTTTCCTGCATTATGTCTGTAGCTGGTTGATAATGGCTATTCTTAATGCTCTCTCCATCCTTTCCTTGTCTACACCATCAAAATCGACAAAATATTCATCGTTGTTGTCTCTTGGTATAGTTATGTCACTTTCTACTGGGCTTGCAAATGTGAGCTTGAAGTATAATAGGTGAGACTTATGGTAATCTTTTCTCCTCTGAAATCTTAACAGGTCTTCTTTCTTGATAGTTAACAAGCACGATATATTTCCAGTGTAGGATTTTACCAGATGGCAAAGATTGCAGTAACACCAGCTATCG</genome_strand>
        <mrna_strand>AGAGAAAAAAATGATGGGTTTTTTGATGAGAAAAGATGTGAGGAAGCTACTCAAGAGGAAGGATAGTGATGCTGGTGAAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCATTGGAGGAGGCACGAGCGTCCTTGTTTAGCAAATTACGAGCATTTGGAGGTGGGAAGCGCCAACAAACTACCTTATGGGGGCCTACTGTTGCATTGACATTCAATTTTTTTGTTTCTGTTAGTATTATCTTGATGAACAAATTG.......................................................................................GTTCTTGTTACAGTCGGATTTAACTATCCAATTTTCCTCTCTTTCCTGCATTATGTCTGTAGCTGGTTGATAATGGCTATTCTTAATGCTCTCTCCATCCTTTCCTTGTCTACACCATCAAAATCGACAAAATATTCATCGTTGTTGTCTCTTGGTATAGTTATGTCACTTTCTACTGGGCTTGCAAATGTGAGCTTGAAGTATAATAG...................................................................................TGTAGGATTTTACCAGATGGCAAAGATTGCAGTAACACCAGCTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332947" ref_strand="+" ref_description="SGN-E332947 [cTOD-19-F9]">
      <seq>tgcccgtgattttctccgacaatactatacgctttgtcacttgtacctaaatcttttaactcaaatcactccgtttaacccgacaaaaccctctttccttaaaaaaaaatcagtactaattactcattaatctttgagatttgcatttactttcatttattttgagtgaatggtagctagttgatacagaaattagttggattgagagaaaaaaatgatgggttttttgatgagaaaagatgtgaggaagctactcaagaggaaggatagtgatgctggtgaaaaaggaagagcattggaggaggcacgagcgtccttgtttagcaaattacgagcatttggaggtgggaagcgccaacaaactaccttatgggggcctactgttgcattgacattcaatttttttgtttctgttagtattatcttgatgaacaaattggttcttgttacagtcggatttaactatccaattttcctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="27217" stop="25061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26917" g_stop="26631" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26630" i_stop="25641" i_length="990">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25640" g_stop="25489" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="439" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25488" i_stop="25402" i_length="87">
            <donor d_prob="0.450" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25401" g_stop="25361" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="480" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E332947" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26917" e_stop="26631"/>
          <exon e_start="25640" e_stop="25489"/>
          <exon e_start="25401" e_stop="25361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCGTGATTTTCTCCGACAATACTATACGCTTTGTCACTTGTACCTAAATCTTTTAACTCAAATCACTCCGTTTAACCCGACAAAACCCTCTTTCCTTAAAAAAAAATCAGTACTAATTACTCATTAATCTTTGAGATTTGCATTTACTTTCATTTATTTTGAGTGAATGGTAGCTAGTTGATACAGAAATTAGTTGGATTGAGAGAAAAAAATGATGGGTTTTTTGATGAGAAAAGATGTGAGGAAGCTACTCAAGAGGAAGGATAGTGATGCTGGTGAAAAAGGTACTTAATTGCTTCAAGATTTAGTTTTTTTCCCTTTTTTTCTTTGTGGGGTTTTGGTAAAATGTGTAAAGGTGTAATCTTTTTTTTTGCATTATGTTATTGAGGGATTTGGTTGTTATTGGGTAATTGGATGTTTCTATGGATTCTTGGTGTTTAAAGTCTTGCCATTTCTGTTAATCTTTCTGTTGTTACTAGCTGTTGTTTTGATTCATTACCAACTTATTAATCTAGAAATTTTAGGAATTGGGAGGAGAAATTTGTAATGCTTCATATGTTTAGCTCAATAATGGTGTGGCTCAGTACTCAATGAGGTGGTTAGGAATCTTGAGGTCTCTGGTTTAAAACTCAATGGAGAGATAACAAACACTAGGTGATTCTGTTGCCGGTGGAGGTGACATGTATCTCATGGAATTAGTCTAGGTAGGTGGCACATATCCCGTGGAATTAGTCTAGGATAGAGTTACTTGAGAGGTGTGTATCTCGTGGAATAGTCTAGGACAGAGTTACCTGAGAGGCGGCATGTATATCCCGTCGAATTAGTCTAGGACAGAGTTACCTGGGAGGTGATGTGTATCTCGTGGAATTAGTCTTGGACAGAGTTATGTGGTTTATGTTGCTGGTGGGAGGTGGTGGCAGTATCTCGTGGAATTAGTGGAGGTGCGAGAAAGCTGTCCATATGTTAGCAACCAATTGTGATATATGTTTGCAATTGACTATATTCCATAACTTCACCTTTGCTCCTGTCAAGTCACTGTATTCACAAATTCTTCGATTGAGCTAACTATACTAATACTTATCGATGGTTTTCCTCTGCACTTAAAAGGCCAAACTTTATCAAATACGTAAGCTCTTTCTACGAGATGTTTGATGTTCATGGTCTAGTAGTAGTCTATTGTTCAACATTCCGGAAGGTATCGGGAAGGATTTGGAATGGAATAATAATGATTCATACGGAAGAAAAGATTTCCTATGTTCCTTTTGTTGGTGCAGGAAGAGCATTGGAGGAGGCACGAGCGTCCTTGTTTAGCAAATTACGAGCATTTGGAGGTGGGAAGCGCCAACAAACTACCTTATGGGGGCCTACTGTTGCATTGACATTCAATTTTTTTGTTTCTGTTAGTATTATCTTGATGAACAAATTGGTCAGTCTACTTAACCTTACTCTATCTGAAAGTAGATATTAAATCTTTTAGAGATCGTAACATTTGCTTTCCTCTTTTCTCTTCCAGGTTCTTGTTACAGTCGGATTTAACTATCCAATTTTCCTCTC</genome_strand>
        <mrna_strand>TGCCCGTGATTTTCTCCGACAATACTATACGCTTTGTCACTTGTACCTAAATCTTTTAACTCAAATCACTCCGTTTAACCCGACAAAACCCTCTTTCCTTAAAAAAAAATCAGTACTAATTACTCATTAATCTTTGAGATTTGCATTTACTTTCATTTATTTTGAGTGAATGGTAGCTAGTTGATACAGAAATTAGTTGGATTGAGAGAAAAAAATGATGGGTTTTTTGATGAGAAAAGATGTGAGGAAGCTACTCAAGAGGAAGGATAGTGATGCTGGTGAAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCATTGGAGGAGGCACGAGCGTCCTTGTTTAGCAAATTACGAGCATTTGGAGGTGGGAAGCGCCAACAAACTACCTTATGGGGGCCTACTGTTGCATTGACATTCAATTTTTTTGTTTCTGTTAGTATTATCTTGATGAACAAATTG.......................................................................................GTTCTTGTTACAGTCGGATTTAACTATCCAATTTTCCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220844" ref_strand="+" ref_description="SGN-E220844 [cLEL-22-E10](-)">
      <seq>cccagtagtccttttaaacgtaacacagtcaaccaatttccgcaaggatggtcacccgtctgtgtatggtaaggttggtaaaaagggtaagcaagattgtagccattggtgtctaccgggagtccccgatgcatggaatgagctaatctatgccactttggtgttgcaacaatgagctgaggctgtttgtgcagcaaatgtatcattggcttgtaacattgtaatatgagatgaatattagttaagtcattttttagtgaagttgcattgtttcagtttttttgtgctaatattagacactatatattcttatttctaggatcaactcacttcaaagttttgtaataccaaacttatgctgcttcactaagcaatgttatcttcttttttttctaagagaagtattcggaatactctaaatttgttgtgaattatcagtttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="28646" stop="27604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28346" g_stop="27905" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="443" polyA_stop="459"/>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E220844" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28346" e_stop="27905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGTAGTCCTTTTAAACGTAACACAGTCAACCAATTTCCGCAAGGATGGTCACCCGTCTGTGTATGGTAAGGTTGGTAAAAAGGGTAAGCAAGATTGTAGCCATTGGTGTCTACCGGGAGTCCCCGATGCATGGAATGAGCTAATCTATGCCACTTTGGTGTTGCAACAATGAGCTGAGGCTGTTTGTGCAGCAAATGTATCATTGGCTTGTAACATTGTAATATGAGATGAATATTAGTTAAGTCATTTTTTAGTGAAGTTGCATTGTTTCAGTTTTTTTGTGCTAATATTAGACACTATATATTCTTATTTCTAGGATCAACTCACTTCAAAGTTTTGTAATACCAAACTTATGCTGCTTCACTAAGCAATGTTATCTTCTTTTTTTTCTAAGAGAAGTATTCGGAATACTCTAAATTTGTTGTGAATTATCAGTTTC</genome_strand>
        <mrna_strand>CCCAGTAGTCCTTTTAAACGTAACACAGTCAACCAATTTCCGCAAGGATGGTCACCCGTCTGTGTATGGTAAGGTTGGTAAAAAGGGTAAGCAAGATTGTAGCCATTGGTGTCTACCGGGAGTCCCCGATGCATGGAATGAGCTAATCTATGCCACTTTGGTGTTGCAACAATGAGCTGAGGCTGTTTGTGCAGCAAATGTATCATTGGCTTGTAACATTGTAATATGAGATGAATATTAGTTAAGTCATTTTTTAGTGAAGTTGCATTGTTTCAGTTTTTTTGTGCTAATATTAGACACTATATATTCTTATTTCTAGGATCAACTCACTTCAAAGTTTTGTAATACCAAACTTATGCTGCTTCACTAAGCAATGTTATCTTCTTTTTTTTCTAAGAGAAGTATTCGGAATACTCTAAATTTGTTGTGAATTATCAGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220948" ref_strand="+" ref_description="SGN-E220948 [cLEL-22-E10](-)">
      <seq>gtagtccttttaaacgtaacacagtcaaccaatttccgcaaggatggtcacccgtctgtgtatggtaaggttggtaaaaagggtaagcaagattgtagccattggtgtctaccgggagtccccgatgcatggaatgagctaatctatgccactttggtgttgcaacaatgagctgaggctgtttgtgcagcaaatgtatcattggcttgtaacattgtaatatgagatgaatattagttaagtcattttttagtgaagttgcattgtttcagtttttttgtgctaatattagacactatatattcttatttctaggatcaactcacttcaaagttttgtaaataccaaacttatgctgcttcactaagcaatgttatcttcttttttttctaagagaagtattcggaatactctaaatttgttgtgaattatcagtttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="28642" stop="27604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28342" g_stop="27905" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="440" polyA_stop="456"/>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E220948" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28342" e_stop="27905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTCCTTTTAAACGTAACACAGTCAACCAATTTCCGCAAGGATGGTCACCCGTCTGTGTATGGTAAGGTTGGTAAAAAGGGTAAGCAAGATTGTAGCCATTGGTGTCTACCGGGAGTCCCCGATGCATGGAATGAGCTAATCTATGCCACTTTGGTGTTGCAACAATGAGCTGAGGCTGTTTGTGCAGCAAATGTATCATTGGCTTGTAACATTGTAATATGAGATGAATATTAGTTAAGTCATTTTTTAGTGAAGTTGCATTGTTTCAGTTTTTTTGTGCTAATATTAGACACTATATATTCTTATTTCTAGGATCAACTCACTTCAAAGTTTTGT-AATACCAAACTTATGCTGCTTCACTAAGCAATGTTATCTTCTTTTTTTTCTAAGAGAAGTATTCGGAATACTCTAAATTTGTTGTGAATTATCAGTTTC</genome_strand>
        <mrna_strand>GTAGTCCTTTTAAACGTAACACAGTCAACCAATTTCCGCAAGGATGGTCACCCGTCTGTGTATGGTAAGGTTGGTAAAAAGGGTAAGCAAGATTGTAGCCATTGGTGTCTACCGGGAGTCCCCGATGCATGGAATGAGCTAATCTATGCCACTTTGGTGTTGCAACAATGAGCTGAGGCTGTTTGTGCAGCAAATGTATCATTGGCTTGTAACATTGTAATATGAGATGAATATTAGTTAAGTCATTTTTTAGTGAAGTTGCATTGTTTCAGTTTTTTTGTGCTAATATTAGACACTATATATTCTTATTTCTAGGATCAACTCACTTCAAAGTTTTGTAAATACCAAACTTATGCTGCTTCACTAAGCAATGTTATCTTCTTTTTTTTCTAAGAGAAGTATTCGGAATACTCTAAATTTGTTGTGAATTATCAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224825" ref_strand="+" ref_description="SGN-E224825 [cLEL-27-I11](-)">
      <seq>cgtctgtgtatggtaaggttggtaaaaagggtaagcaagattgtagccattggtgtctaccgggagtccccgatgcatggaatgagctaatctatgccactttggtgttgcaacaatgagctgaggctgtttgtgcagcaaatgtatcattggcttgtaacattgtaatatgagatgaatattagttaagtcattttttagtgaagttgcattgtttcagtttttttgtgctaatattagccactacatattcttatttctaggatcaactcacttcaaagttttgtaataccaaacttatgctgcttcactaagcaatgttatcttcttttttttctaagagaagtattaggcaccccctaaatttgttgtgaattatcagttacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="28590" stop="27604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28290" g_stop="27905" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="403"/>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E224825" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28290" e_stop="27905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTGTGTATGGTAAGGTTGGTAAAAAGGGTAAGCAAGATTGTAGCCATTGGTGTCTACCGGGAGTCCCCGATGCATGGAATGAGCTAATCTATGCCACTTTGGTGTTGCAACAATGAGCTGAGGCTGTTTGTGCAGCAAATGTATCATTGGCTTGTAACATTGTAATATGAGATGAATATTAGTTAAGTCATTTTTTAGTGAAGTTGCATTGTTTCAGTTTTTTTGTGCTAATATTAGACACTATATATTCTTATTTCTAGGATCAACTCACTTCAAAGTTTTGTAATACCAAACTTATGCTGCTTCACTAAGCAATGTTATCTTCTTTTTTTTCTAAGAGAAGTATTCGGAATACTCTAAATTTGTTGTGAATTATCAGTTTC</genome_strand>
        <mrna_strand>CGTCTGTGTATGGTAAGGTTGGTAAAAAGGGTAAGCAAGATTGTAGCCATTGGTGTCTACCGGGAGTCCCCGATGCATGGAATGAGCTAATCTATGCCACTTTGGTGTTGCAACAATGAGCTGAGGCTGTTTGTGCAGCAAATGTATCATTGGCTTGTAACATTGTAATATGAGATGAATATTAGTTAAGTCATTTTTTAGTGAAGTTGCATTGTTTCAGTTTTTTTGTGCTAATATTAGCCACTACATATTCTTATTTCTAGGATCAACTCACTTCAAAGTTTTGTAATACCAAACTTATGCTGCTTCACTAAGCAATGTTATCTTCTTTTTTTTCTAAGAGAAGTATTAGGCACCCCCTAAATTTGTTGTGAATTATCAGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336072" ref_strand="+" ref_description="SGN-E336072 [cTOE-12-O15]">
      <seq>ttttttagtgaagttgcattgtttcagtttttttgtgctaatattagacactatatattcttatttctaggatcaactcacttcaaagttttgtaataccaaacttatgctgcttcactaagcaatgttatcttcttttttttctaagagaagtattcggaatactctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="28397" stop="27627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28097" g_stop="27928" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E336072" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>170</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28097" e_stop="27928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTAGTGAAGTTGCATTGTTTCAGTTTTTTTGTGCTAATATTAGACACTATATATTCTTATTTCTAGGATCAACTCACTTCAAAGTTTTGTAATACCAAACTTATGCTGCTTCACTAAGCAATGTTATCTTCTTTTTTTTCTAAGAGAAGTATTCGGAATACTCTAA</genome_strand>
        <mrna_strand>TTTTTTAGTGAAGTTGCATTGTTTCAGTTTTTTTGTGCTAATATTAGACACTATATATTCTTATTTCTAGGATCAACTCACTTCAAAGTTTTGTAATACCAAACTTATGCTGCTTCACTAAGCAATGTTATCTTCTTTTTTTTCTAAGAGAAGTATTCGGAATACTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700198" ref_strand="+" ref_description="SGN-E700198 [FA12BG03]">
      <seq>ctgagactagttctggttctagtgagaagtcaaaatttgatcttgatgtaacatcagaaacacccaaatctagtttagttgagaaaaactcaagacctattggagaaagttgtgatctttttaagggaagttgggttaaagatgagaatcatccaatttataagccagggtcttgcccttatgtggatgaggcttttgattgtcagactaatggtaggccagactcacaatatcttaaatggagatggaagccatatggatgtcatcttccaaggtttagtccatcagattttttgtacagattgaaaggaaagaggctgatgctggttggggactcaatgaaccggaaccagtttgaatctctcctttgccttcttcgtgaaggcctcactaataagagtaaaatgtacgaaatccatgggtataagataacaaaaggaagaggctattatgttttcaaatttgaggattataactgcactgttgagtttgtgcgctcgcacttccttgttagagaaggagtacgtatcaatcctcaaggaagctcaaatccaactctatcaatagatcgcatcgacaaaacatctaatcgttggaagggagctgacattctaatcttcaatacggggcattggtggactcatgggaagactgccagggggaaaaattactataaagaaggtgacctaatataccctaaatttgatgccgttgaagcttataggagagcattgaagacctgggctaagtggattgacgaaaacatgagccgtgaaaagttgattatatatcgtgggtattcttcagctcactatagaggcggagactgggattcaggtggaagttgtaacaaagagagtgaacctgtatcgaaaggtgctatccttggaaactatccgatgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="31434" stop="28083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31134" g_stop="30861" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30860" i_stop="29511" i_length="1350">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29510" g_stop="29318" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="467" r_length="193" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29317" i_stop="29194" i_length="124">
            <donor d_prob="0.286" d_score="1.00"/>
            <acceptor a_prob="0.355" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29193" g_stop="29000" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="661" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28999" i_stop="28799" i_length="201">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28798" g_stop="28643" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="817" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28642" i_stop="28473" i_length="170">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28472" g_stop="28383" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="818" r_stop="907" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E700198" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31134" e_stop="30861"/>
          <exon e_start="29510" e_stop="29318"/>
          <exon e_start="29193" e_stop="29000"/>
          <exon e_start="28798" e_stop="28643"/>
          <exon e_start="28472" e_stop="28383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGACTAGTTCTAGTTCTAGTGAGAAGTCAAAATTTGATCTTGATGTAACATCAGAAACACCCAAATCTAGTTTAGTTGAGAAAAACTCAAGACCTATTGGAGAAAGTTGTGATCTTTTTAAGGGAAGATGGGTTAAAGATGAGAATCATCCAATTTATAAGCCAGGGTCTTGCCCTTATGTGGATGAGGCTTTTGATTGTCAGACTAATGGTAGGCCAGACTCACAGTATCTTAAATGGAGATGGAAGCCATTTGGATGTCATCTTCCAAGGTAACTTAAATTACTCATTTTTCTTTGTAAAAATGATGATTTTTGAAGTTATTTTGTAGTTATATGTCCTTTGTTGAGCTGTCAGCTTCTGTCAAACTACATGAGTTGGACATTCAAACAAGAACTAGTAACCAATATTGATTTCCTACATTGTGATTGTGATTATATATTTGGGCGTTTTCGATCATAGCTCTGTGTTCGAGTAAGGTAAACAGTTCTAATGGAGAGTGAATTGCAATGTAATCATTCAAACAGAATTCTTTTGTCTTATTATGTGGCTGTTTGTTGATGAACGATTTGCGATTCTTGAAAGAAAGAGATGGTTGAGGTCTATGGTTAAAGGAAGATTTTCAACTCTGAAGAAAGAGATGGTTTTGTAGTCCAAGTTTGCAAGTTCTGTTTGTGCCGTTATGATAAGAAATCGTAGAATGGTCTGTCTTTTTACCATTCTAGTAGAAATCGTATTGGAACCGACTACTGGAAGTGTGTCTGATATGTAGAGGATAATGCAAATTGAAGGTAATGTCTGCAATTGTTCAATTGGAAGATAATAAATGCAAATGTGCTACCAGACATGACTTTAGATAGGATTGAGTGGAGGTCGCGTGTTAGGGTAGAAGGTTAGTAGGGGTAGAGTATTGTCTTGCCTTGAGAAAGTTTAGGCTTGTTAGTGCCTAGTGTAGTACTAGTCATATCCTTGTAGTTCTTGCCACACGTATATTATTGTATGTCAATTATCATGCTATTTATATTTCTCTCTTGTAGACGTTACACTGCTTTCCTTACAAACTGCTATTGCTTTCTTCATTGTCTTCTTCTATTTTTACTTGGGTTGATGCACTCGAGGCGAGGGTCTTTCGGAAACAACCTCTAAGGTCTGCGTACACTCTAGCCTCCGTAGACACCACTTAGTGAGAATTCACTGGGTATGTTGTTGTTAGTACAGAAAAAACCTGCTACTATAAATATATTAACTGTTAAGATAAGGAGTTAGTAATTGTTGTAGGTTTTTGGCTAGTAATGAATAGTATCTACACTAAAGATTTGGTTGACTATTTCCCAAGGATGTACTCATGTTTATGTTTTGTGTTGCTGATGCTATATTAATTCTGTTTTTGCAATAATCTTCTTCTCTTCATGTTGTTAGACTAAATAATAGTTATAGTTAAAAATACTAAGCGTGGAGTTCGACTTAGTGAAAGTTTTGAGTCAAATGGTGTGCTCTAGATTTCAACTGATTCATACGATGATAAAACTTATTCATCTCGTCGATAAATAGCCATTCATTTGTTGATTCAGGGGACTACTTATAGAACTTGTATCCTTAAACCAGTTATAATTCTTTTGTAGGTTTAGTCCATCAGATTTTTTGTACAGATTGAAAGGAAAGAGGCTGATGCTGGTTGGGGACTCAATGAACCGGAACCAGTTTGAATCTCTCCTTTGCCTTCTTCGTGAAGGCCTCACTAATAAGAGTAAAATGTACGAGATCCATGGGTATAAGATAACAAAAGGAAGAGGCTATTATGTTTTCAAATTTGAGGTGATTTTGCATATGCATTTATTAAGATTATAGCTAAACTGAAATCATTTATATCAATGATGAAATGTTGCGAAAGCTTCTTAGTAAAGAGAGCAGTGAGGACTAAAATATTATAGTTTTGCAGGATTATAACTGCACTGTTGAGTTTGTGCGCTCGCACTTCCTTGTTAGAGAAGGAGTACGTATCAATCCTCAAGGAAGCTCAAATCCAACTCTATCAATAGATCGCATCGACAAAACATCTAATCGTTGGAAGGGAGCTGACATTCTAATCTTCAATACGGGGCATTGGTGGACTCATGGGAAGACTGCCAGGGGGTGTGTTTTATTCTTCTTACAATTACCTTTCATTAAATGCAACATATATGCTATCATTGCCATTAGTATCTTTTCTTACTGAGGTTATCTTTTACGAGCTGGGAGATCATTTGACTTATCGTTCTATAGTAATCTGAGAGCATTATAGCGTATTTCAAGGCTGAAATCCTAACAACTAAGATGAGGTTTTCGTTGGTGCAGGAAAAATTACTATAAAGAAGGTGACCTAATATACCCTAAATTTGATGCCGTTGAAGCTTATAGGAGAGCATTGAAAACCTGGGCTAAGTGGATTGAAGAAAACATGAGCCGTGAAAAGTTGATTATATATCGTGGGTATTCTTCAGCTCACTATAGGTACTTACTGTTGCTTCCACAATAGAATCTTTTGAAACCAAAATGCTAACGTTTGTCCAATGAAAAGCTCGGCTCATTCACTCATCAAGATCGACCTTAAATAGCCTTTCCATTTGGTTGCATCATGTATGATGTACAAACTTGTGTAACGTTTACTTGTATTTAAACAGAGGCGGAGACTGGGATTCAGGTGGAAGTTGTAACAAAGAGAGTGAACCTGTTTCGAAAGGTGCTATCCTTGGAAACTATCCGATGAAAAT</genome_strand>
        <mrna_strand>CTGAGACTAGTTCTGGTTCTAGTGAGAAGTCAAAATTTGATCTTGATGTAACATCAGAAACACCCAAATCTAGTTTAGTTGAGAAAAACTCAAGACCTATTGGAGAAAGTTGTGATCTTTTTAAGGGAAGTTGGGTTAAAGATGAGAATCATCCAATTTATAAGCCAGGGTCTTGCCCTTATGTGGATGAGGCTTTTGATTGTCAGACTAATGGTAGGCCAGACTCACAATATCTTAAATGGAGATGGAAGCCATATGGATGTCATCTTCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAGTCCATCAGATTTTTTGTACAGATTGAAAGGAAAGAGGCTGATGCTGGTTGGGGACTCAATGAACCGGAACCAGTTTGAATCTCTCCTTTGCCTTCTTCGTGAAGGCCTCACTAATAAGAGTAAAATGTACGAAATCCATGGGTATAAGATAACAAAAGGAAGAGGCTATTATGTTTTCAAATTTGAG............................................................................................................................GATTATAACTGCACTGTTGAGTTTGTGCGCTCGCACTTCCTTGTTAGAGAAGGAGTACGTATCAATCCTCAAGGAAGCTCAAATCCAACTCTATCAATAGATCGCATCGACAAAACATCTAATCGTTGGAAGGGAGCTGACATTCTAATCTTCAATACGGGGCATTGGTGGACTCATGGGAAGACTGCCAGGGG.........................................................................................................................................................................................................GAAAAATTACTATAAAGAAGGTGACCTAATATACCCTAAATTTGATGCCGTTGAAGCTTATAGGAGAGCATTGAAGACCTGGGCTAAGTGGATTGACGAAAACATGAGCCGTGAAAAGTTGATTATATATCGTGGGTATTCTTCAGCTCACTATAG..........................................................................................................................................................................AGGCGGAGACTGGGATTCAGGTGGAAGTTGTAACAAAGAGAGTGAACCTGTATCGAAAGGTGCTATCCTTGGAAACTATCCGATGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256525" ref_strand="+" ref_description="SGN-E256525 [cLEG-38-G23]">
      <seq>taagggaagatgggttaaagatgataatcatccaatttataagccagggtcttggggttatgtggatgaagcttttgattgtcagactaatggtaggccagactcacagtatcttaaatggagatggaagccatttggatgtcatcttccaaggtttagtccatcagattttttgtacagattgaaaggaaagaggctgatgctggttggggactcaatgaaccggaaccagtttgaatctctcctttgccttcttcgtgaaggcctcactaataagagtaaaatgtacgagatccatgggtataagataacaaaaggaagaggctattatgttttcaaatttgaggattataactgcactgttgagtttgtgcgctcgcacttccttgttagagaaggagtacgtatcaatcctcaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="31313" stop="28819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31013" g_stop="30861" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30860" i_stop="29511" i_length="1350">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29510" g_stop="29318" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="346" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29317" i_stop="29194" i_length="124">
            <donor d_prob="0.286" d_score="1.00"/>
            <acceptor a_prob="0.355" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29193" g_stop="29119" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="421" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E256525" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31013" e_stop="30861"/>
          <exon e_start="29510" e_stop="29318"/>
          <exon e_start="29193" e_stop="29119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGGAAGATGGGTTAAAGATGAGAATCATCCAATTTATAAGCCAGGGTCTTGCCCTTATGTGGATGAGGCTTTTGATTGTCAGACTAATGGTAGGCCAGACTCACAGTATCTTAAATGGAGATGGAAGCCATTTGGATGTCATCTTCCAAGGTAACTTAAATTACTCATTTTTCTTTGTAAAAATGATGATTTTTGAAGTTATTTTGTAGTTATATGTCCTTTGTTGAGCTGTCAGCTTCTGTCAAACTACATGAGTTGGACATTCAAACAAGAACTAGTAACCAATATTGATTTCCTACATTGTGATTGTGATTATATATTTGGGCGTTTTCGATCATAGCTCTGTGTTCGAGTAAGGTAAACAGTTCTAATGGAGAGTGAATTGCAATGTAATCATTCAAACAGAATTCTTTTGTCTTATTATGTGGCTGTTTGTTGATGAACGATTTGCGATTCTTGAAAGAAAGAGATGGTTGAGGTCTATGGTTAAAGGAAGATTTTCAACTCTGAAGAAAGAGATGGTTTTGTAGTCCAAGTTTGCAAGTTCTGTTTGTGCCGTTATGATAAGAAATCGTAGAATGGTCTGTCTTTTTACCATTCTAGTAGAAATCGTATTGGAACCGACTACTGGAAGTGTGTCTGATATGTAGAGGATAATGCAAATTGAAGGTAATGTCTGCAATTGTTCAATTGGAAGATAATAAATGCAAATGTGCTACCAGACATGACTTTAGATAGGATTGAGTGGAGGTCGCGTGTTAGGGTAGAAGGTTAGTAGGGGTAGAGTATTGTCTTGCCTTGAGAAAGTTTAGGCTTGTTAGTGCCTAGTGTAGTACTAGTCATATCCTTGTAGTTCTTGCCACACGTATATTATTGTATGTCAATTATCATGCTATTTATATTTCTCTCTTGTAGACGTTACACTGCTTTCCTTACAAACTGCTATTGCTTTCTTCATTGTCTTCTTCTATTTTTACTTGGGTTGATGCACTCGAGGCGAGGGTCTTTCGGAAACAACCTCTAAGGTCTGCGTACACTCTAGCCTCCGTAGACACCACTTAGTGAGAATTCACTGGGTATGTTGTTGTTAGTACAGAAAAAACCTGCTACTATAAATATATTAACTGTTAAGATAAGGAGTTAGTAATTGTTGTAGGTTTTTGGCTAGTAATGAATAGTATCTACACTAAAGATTTGGTTGACTATTTCCCAAGGATGTACTCATGTTTATGTTTTGTGTTGCTGATGCTATATTAATTCTGTTTTTGCAATAATCTTCTTCTCTTCATGTTGTTAGACTAAATAATAGTTATAGTTAAAAATACTAAGCGTGGAGTTCGACTTAGTGAAAGTTTTGAGTCAAATGGTGTGCTCTAGATTTCAACTGATTCATACGATGATAAAACTTATTCATCTCGTCGATAAATAGCCATTCATTTGTTGATTCAGGGGACTACTTATAGAACTTGTATCCTTAAACCAGTTATAATTCTTTTGTAGGTTTAGTCCATCAGATTTTTTGTACAGATTGAAAGGAAAGAGGCTGATGCTGGTTGGGGACTCAATGAACCGGAACCAGTTTGAATCTCTCCTTTGCCTTCTTCGTGAAGGCCTCACTAATAAGAGTAAAATGTACGAGATCCATGGGTATAAGATAACAAAAGGAAGAGGCTATTATGTTTTCAAATTTGAGGTGATTTTGCATATGCATTTATTAAGATTATAGCTAAACTGAAATCATTTATATCAATGATGAAATGTTGCGAAAGCTTCTTAGTAAAGAGAGCAGTGAGGACTAAAATATTATAGTTTTGCAGGATTATAACTGCACTGTTGAGTTTGTGCGCTCGCACTTCCTTGTTAGAGAAGGAGTACGTATCAATCCTCAAGGA</genome_strand>
        <mrna_strand>TAAGGGAAGATGGGTTAAAGATGATAATCATCCAATTTATAAGCCAGGGTCTTGGGGTTATGTGGATGAAGCTTTTGATTGTCAGACTAATGGTAGGCCAGACTCACAGTATCTTAAATGGAGATGGAAGCCATTTGGATGTCATCTTCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAGTCCATCAGATTTTTTGTACAGATTGAAAGGAAAGAGGCTGATGCTGGTTGGGGACTCAATGAACCGGAACCAGTTTGAATCTCTCCTTTGCCTTCTTCGTGAAGGCCTCACTAATAAGAGTAAAATGTACGAGATCCATGGGTATAAGATAACAAAAGGAAGAGGCTATTATGTTTTCAAATTTGAG............................................................................................................................GATTATAACTGCACTGTTGAGTTTGTGCGCTCGCACTTCCTTGTTAGAGAAGGAGTACGTATCAATCCTCAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348886" ref_strand="+" ref_description="SGN-E348886 [cTOF-29-C11]">
      <seq>ttcagtagaaaaattgttcaacctactcaaatactctctgtttacagagaaaccctttctcaaacccctatattcttgcaaaatcagacccccattttgccaaaatctagtcttgatgatagtttggttgaacccatttcactaaacacttctacagagatacccattttgtcaaaatctgattttgatggtagtttggttgaatcagagaccatttctagttctaatgaaacatcaagatttcaagctaatacagagatacccattttgtcaaaatctgattttgatggtagtttggttgaatcagagactatctctagttctaatgaaacatcaagatttcaagaattagaggttaatacacagatgcccattttgtcaaaaactgattttgatgataatttggttaaacccaattcacctgagactagttctagttctagtgagaagtcaaaatttgatcttgatgtaacatcagaaacacccaaatctagtttagttgagaaaaactcaagacctattggagaaagtttgtgatctttttaagggaagatgggttaaagatgagaatcatccaatttataagccagggtcttgcccttatgtggatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="31855" stop="30644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31555" g_stop="30944" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E348886" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31555" e_stop="30944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTAGAAAAATTGTTCAACCTACTCAAATACTCTCTGTTTACAGAGAAACCCTTTCTCAAACCCCTATATTCTTGCAAAATCAGACCCCCATTTTGCCAAAATCTAGTCTTGATGATAGTTTGGTTGAACCCATTTCACTAAACACTTCTACAGAGATACCCATTTTGTCAAAATCTGATTTTGATGGTAGTTTGGTTGAATCAGAGACCATTTCTAGTTCTAATGAAACATCAAGATTTCAAGCTAATACAGAGATACCCATTTTGTCAAAATCTGATTTTGATGGTAGTTTGGTTGAATCAGAGACTATCTCTAGTTCTAATGAAACATCAAGATTTCAAGAATTAGAGGTTAATACACAGATGCCCATTTTGTCAAAAACTGATTTTGATGATAATTTGGTTAAACCCAATTCACCTGAGACTAGTTCTAGTTCTAGTGAGAAGTCAAAATTTGATCTTGATGTAACATCAGAAACACCCAAATCTAGTTTAGTTGAGAAAAACTCAAGACCTATTGGAGAAAG-TTGTGATCTTTTTAAGGGAAGATGGGTTAAAGATGAGAATCATCCAATTTATAAGCCAGGGTCTTGCCCTTATGTGGATGAG</genome_strand>
        <mrna_strand>TTCAGTAGAAAAATTGTTCAACCTACTCAAATACTCTCTGTTTACAGAGAAACCCTTTCTCAAACCCCTATATTCTTGCAAAATCAGACCCCCATTTTGCCAAAATCTAGTCTTGATGATAGTTTGGTTGAACCCATTTCACTAAACACTTCTACAGAGATACCCATTTTGTCAAAATCTGATTTTGATGGTAGTTTGGTTGAATCAGAGACCATTTCTAGTTCTAATGAAACATCAAGATTTCAAGCTAATACAGAGATACCCATTTTGTCAAAATCTGATTTTGATGGTAGTTTGGTTGAATCAGAGACTATCTCTAGTTCTAATGAAACATCAAGATTTCAAGAATTAGAGGTTAATACACAGATGCCCATTTTGTCAAAAACTGATTTTGATGATAATTTGGTTAAACCCAATTCACCTGAGACTAGTTCTAGTTCTAGTGAGAAGTCAAAATTTGATCTTGATGTAACATCAGAAACACCCAAATCTAGTTTAGTTGAGAAAAACTCAAGACCTATTGGAGAAAGTTTGTGATCTTTTTAAGGGAAGATGGGTTAAAGATGAGAATCATCCAATTTATAAGCCAGGGTCTTGCCCTTATGTGGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272211" ref_strand="+" ref_description="SGN-E272211 [cLEM-19-I9]">
      <seq>ttgtattttccttgtatttttcttctttgtttcaactatcttctttttcagtagaaaaattgttcaacctactcaaatactctctgtttacagagaaaccctttctcaaacccctatattcttgcaaaatcagacccccattttgccaaaatctagtcttgatgatagtttggttgaacccatttcactaaacacttctacagagatacccattttgtcaaaatctgattttgatggtagtttggttgaatcagagaccatttctagttctaatgaaacatcaagatttcaagctaatacagagatacccattttgtcaaaatctgattttgatggtagtttggttgaatcagagactatctctagttctaatgaaacatcaagatttcaagaattagaggttaatacacagatgcccattttgtcaaaaactgattttgatgataatttggttaaacccaattcacctgagactagttctagttctagtgagaagtcaaaatttgatcttgatgtaacatcagaaacacccaaatctagtttagttgagaaaaactcaagacctattggagaaagttgtgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="31901" stop="30718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31601" g_stop="31018" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E272211" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31601" e_stop="31018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATTTTCCTTGTATTTTTCTTCTTTGTTTCAACTATCTTCTTTTTCAGTAGAAAAATTGTTCAACCTACTCAAATACTCTCTGTTTACAGAGAAACCCTTTCTCAAACCCCTATATTCTTGCAAAATCAGACCCCCATTTTGCCAAAATCTAGTCTTGATGATAGTTTGGTTGAACCCATTTCACTAAACACTTCTACAGAGATACCCATTTTGTCAAAATCTGATTTTGATGGTAGTTTGGTTGAATCAGAGACCATTTCTAGTTCTAATGAAACATCAAGATTTCAAGCTAATACAGAGATACCCATTTTGTCAAAATCTGATTTTGATGGTAGTTTGGTTGAATCAGAGACTATCTCTAGTTCTAATGAAACATCAAGATTTCAAGAATTAGAGGTTAATACACAGATGCCCATTTTGTCAAAAACTGATTTTGATGATAATTTGGTTAAACCCAATTCACCTGAGACTAGTTCTAGTTCTAGTGAGAAGTCAAAATTTGATCTTGATGTAACATCAGAAACACCCAAATCTAGTTTAGTTGAGAAAAACTCAAGACCTATTGGAGAAAGTTGTGATC</genome_strand>
        <mrna_strand>TTGTATTTTCCTTGTATTTTTCTTCTTTGTTTCAACTATCTTCTTTTTCAGTAGAAAAATTGTTCAACCTACTCAAATACTCTCTGTTTACAGAGAAACCCTTTCTCAAACCCCTATATTCTTGCAAAATCAGACCCCCATTTTGCCAAAATCTAGTCTTGATGATAGTTTGGTTGAACCCATTTCACTAAACACTTCTACAGAGATACCCATTTTGTCAAAATCTGATTTTGATGGTAGTTTGGTTGAATCAGAGACCATTTCTAGTTCTAATGAAACATCAAGATTTCAAGCTAATACAGAGATACCCATTTTGTCAAAATCTGATTTTGATGGTAGTTTGGTTGAATCAGAGACTATCTCTAGTTCTAATGAAACATCAAGATTTCAAGAATTAGAGGTTAATACACAGATGCCCATTTTGTCAAAAACTGATTTTGATGATAATTTGGTTAAACCCAATTCACCTGAGACTAGTTCTAGTTCTAGTGAGAAGTCAAAATTTGATCTTGATGTAACATCAGAAACACCCAAATCTAGTTTAGTTGAGAAAAACTCAAGACCTATTGGAGAAAGTTGTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468764" ref_strand="+" ref_description="SGN-E468764 [cSTB-6-E19]">
      <seq>cctttctcaaacccctatactcttgcaaaatcatgacccccatgtcaccaaaatctgatcttgatgatagcttggttaaccccatttcaccaaagacttctacagagatacccattttggcaaaaactgattttgatgataatttggttaaacctatttcacctgagactagttctagttctagtgagaagtcaaaatctgatcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="31802" stop="30789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31502" g_stop="31386" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31385" i_stop="31179" i_length="207">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31178" g_stop="31089" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="208" r_length="90" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E468764" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31502" e_stop="31386"/>
          <exon e_start="31178" e_stop="31089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCTCAAACCCCTATATTCTTGCAAAATCA-GACCCCCATTTTGCCAAAATCTAGTCTTGATGATAGTTTGGTTGAACCCATTTCACTAAACACTTCTACAGAGATACCCATTTTGTCAAAATCTGATTTTGATGGTAGTTTGGTTGAATCAGAGACCATTTCTAGTTCTAATGAAACATCAAGATTTCAAGCTAATACAGAGATACCCATTTTGTCAAAATCTGATTTTGATGGTAGTTTGGTTGAATCAGAGACTATCTCTAGTTCTAATGAAACATCAAGATTTCAAGAATTAGAGGTTAATACACAGATGCCCATTTTGTCAAAAACTGATTTTGATGATAATTTGGTTAAACCCAATTCACCTGAGACTAGTTCTAGTTCTAGTGAGAAGTCAAAATTTGATCTTGA</genome_strand>
        <mrna_strand>CCTTTCTCAAACCCCTATACTCTTGCAAAATCATGACCCCCATGTCACCAAAATCTGATCTTGATGATAGCTTGGTTAACCCCATTTCACCAAAGACTTCTACAGAGATACCCATTTT...............................................................................................................................................................................................................GGCAAAAACTGATTTTGATGATAATTTGGTTAAACCTATTTCACCTGAGACTAGTTCTAGTTCTAGTGAGAAGTCAAAATCTGATCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421423" ref_strand="+" ref_description="SGN-E421423 [STM-32-J4]">
      <seq>gcaaagacgccttcttctttagcctaactctgtttctgctgaaaaaggtatttcccactaacccttcttcttcttcttcttcaagcattacaaagaaatagtgtttgttccaatggcgtatgtcgatcatgctttctcaatttccgatgaggatatgatgatggaaggttctcatgccgataacaatcgtggacccattaaagagatcgctcttgctgtttcccttcttgtatttggtaccctcgctatttttctaggtattttcatggcaatcaataaggtcggtggcgatacagctcatgggcttttttttgctatacttggtggagttctgtttataccagggttctactatacaaggattgcatactatgcttacaagggttataaaggtttctctttttccaatatacctcctgtctagagtcgattatcgattattgattatcgaagctctcctacattgtacagctacctcatttactctacctagataagcttgtgaagaaaaaaaattagtgttgctactaataagttacctncggtattggatgttgaatcattactattacttgctagaactatgtatcctttaactcagtatggacacgatgtaataatacaagtgcttgcgtgtttattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38071" stop="39443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38371" g_stop="38670" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38671" i_stop="38795" i_length="125">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38796" g_stop="39143" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="646" r_length="344" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E421423" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38371" e_stop="38670"/>
          <exon e_start="38796" e_stop="39143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAGACGCCTTTCTTCTTAAGCCAAACTCTGTTTCTGCTGAAAATAGGTATTTCCCACTAA-CC--CTT---CTTCTTCTTCAAGCATTACAAAGAAAATAGTGTTTGTTTCAATGGCGTACGTCGATCATGCTTTCTCAATTTCCGATGAGGATATGATGATGGAAGGTTCTCATGCCGATAACAATCGTGGACCTATCAAAGAGATCGCTCTTGCTGTTTCCCTTCTTGTATTTGGTACCCTAGCTATTTTTCTAGGTATTTTCATGGCAATCAATAAGGTCGGTGGCGATACAGCTCATGGTAACTCCTTAATCCTCTTCAGCTCACTTTTTACTCATCTGATTTCGATTTTGATTTTGATTTCTCTCTCTAGGGTTTTTTTTTTTAGTATGTATTGTTATTTGAAGAAGATGCTTGTAATGCAGGGCTTTTTTTTGCTATACTTGGTGGAGTTTTGTTTATACCAGGGTTCTACTATACAAGGATTGCATACTATGCTTACAAGGGTTATAAAGGTTTCTCTTTTTCCAATATACCTCCTGTCTAGAGTCGAGTTTCGATTATCGATTGTTGATTATCGAAGCTCTTCATACATTGTACAGCTACCTCATTTACTCTACCTAGATAAGCTTGTGAAGAAAAAAAAAATTAGTGTTGCTTCTAATAGGTTGCCTCGGATGTTGGATGTTGAATC-TT-----TACTTGCTA-AACTATGTAATCCTTTAACTCAGTATGGACACGATGTAATAATACGAGTGCTTGTTTGTTTACTGATG</genome_strand>
        <mrna_strand>GCAAA-GACGCC-TTCTTCTTTAGCCTAACTCTGTTTCTGCTGAAAA-AGGTATTTCCCACTAACCCTTCTTCTTCTTCTTCTTCAAGCATTACAAAGA-AATAGTGTTTGTTCCAATGGCGTATGTCGATCATGCTTTCTCAATTTCCGATGAGGATATGATGATGGAAGGTTCTCATGCCGATAACAATCGTGGACCCATTAAAGAGATCGCTCTTGCTGTTTCCCTTCTTGTATTTGGTACCCTCGCTATTTTTCTAGGTATTTTCATGGCAATCAATAAGGTCGGTGGCGATACAGCTCATG.............................................................................................................................GGCTTTTTTTTGCTATACTTGGTGGAGTTCTGTTTATACCAGGGTTCTACTATACAAGGATTGCATACTATGCTTACAAGGGTTATAAAGGTTTCTCTTTTTCCAATATACCTCCTGTCT--A---GAG--TCGATTATCGATTATTGATTATCGAAGCTC-TCCTACATTGTACAGCTACCTCATTTACTCTACCTAGATAAGCTTGTGAAG--AAAAAAAATTAGTGTTGCTACTAATAAGTTACCTNCGGTATTGGATGTTGAATCATTACTATTACTTGCTAGAACTATGT-ATCCTTTAACTCAGTATGGACACGATGTAATAATACAAGTGCTTGCGTGTTTATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407837" ref_strand="+" ref_description="SGN-E407837 [PPI-8-P13]">
      <seq>gcaaagacgccttcttctttagcctaactctgtttctgctgaaaaaggtatttcccactaacccttcttcttcttcttcttcaagcattacaaagaaatagtgtttgttccaatggcgtatgtcgatcatgctttctcaatttccgatgaggatatgatgatggaaggttctcatgccgataacaatcgtggacccattaaagagatcgctcttgctgtttcccttcttgtatttggtaccctcgctatttttctaggtattttcatggcaatcaataaagtcggtggcgatacagctcatgggcttttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38071" stop="38971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38371" g_stop="38670" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38671" i_stop="38795" i_length="125">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.853" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38796" g_stop="38807" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="314" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E407837" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38371" e_stop="38670"/>
          <exon e_start="38796" e_stop="38807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAGACGCCTTTCTTCTTAAGCCAAACTCTGTTTCTGCTGAAAATAGGTATTTCCCACTAA-CC--CTT---CTTCTTCTTCAAGCATTACAAAGAAAATAGTGTTTGTTTCAATGGCGTACGTCGATCATGCTTTCTCAATTTCCGATGAGGATATGATGATGGAAGGTTCTCATGCCGATAACAATCGTGGACCTATCAAAGAGATCGCTCTTGCTGTTTCCCTTCTTGTATTTGGTACCCTAGCTATTTTTCTAGGTATTTTCATGGCAATCAATAAGGTCGGTGGCGATACAGCTCATGGTAACTCCTTAATCCTCTTCAGCTCACTTTTTACTCATCTGATTTCGATTTTGATTTTGATTTCTCTCTCTAGGGTTTTTTTTTTTAGTATGTATTGTTATTTGAAGAAGATGCTTGTAATGCAGGGCTTTTTTTTG</genome_strand>
        <mrna_strand>GCAAA-GACGCC-TTCTTCTTTAGCCTAACTCTGTTTCTGCTGAAAA-AGGTATTTCCCACTAACCCTTCTTCTTCTTCTTCTTCAAGCATTACAAAGA-AATAGTGTTTGTTCCAATGGCGTATGTCGATCATGCTTTCTCAATTTCCGATGAGGATATGATGATGGAAGGTTCTCATGCCGATAACAATCGTGGACCCATTAAAGAGATCGCTCTTGCTGTTTCCCTTCTTGTATTTGGTACCCTCGCTATTTTTCTAGGTATTTTCATGGCAATCAATAAAGTCGGTGGCGATACAGCTCATG.............................................................................................................................GGCTTTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715942" ref_strand="+" ref_description="SGN-E715942 [FB15CG08]">
      <seq>cttcttaagccaaactctgtttctgctgaaaataggtatttcccactaacccttcttcttcttcaagcattacaaagaaaatagtgtttgtttcaatggcgtacgtcgatcatgctttctcaatttccgatgaggatatgatgatggaaggttctcatgccgataacaatcgtggacctatcaaagagatcgctcttgctgtttcccttcttgtatttggtaccctagctatttttctaggtattttcatggcaatcaataaggtcggtggcgatacagctcatgggcttttttttgctatacttggtggagttttgtttataccagggttctactatacaaggattgcatactatgcttacaagggttataaaggtttctctttttccaatatacctcctgtctagagtcgagtttcgattatcgattgttgattatcgaagctcttcatacattgtacagctacctcatttactctacctagataagcttgtgaagaaaaaaaaaattagtgttgcttctaataggttgcctcggatgttggatgttgaatctttacttgctaaactatgtaatcctttaactcagtatggacacgatgtaataatacgagtgcttgtttgtttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38086" stop="39437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38386" g_stop="38670" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38671" i_stop="38795" i_length="125">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38796" g_stop="39150" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="640" r_length="355" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E715942" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38386" e_stop="38670"/>
          <exon e_start="38796" e_stop="39150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTAAGCCAAACTCTGTTTCTGCTGAAAATAGGTATTTCCCACTAACCCTTCTTCTTCTTCAAGCATTACAAAGAAAATAGTGTTTGTTTCAATGGCGTACGTCGATCATGCTTTCTCAATTTCCGATGAGGATATGATGATGGAAGGTTCTCATGCCGATAACAATCGTGGACCTATCAAAGAGATCGCTCTTGCTGTTTCCCTTCTTGTATTTGGTACCCTAGCTATTTTTCTAGGTATTTTCATGGCAATCAATAAGGTCGGTGGCGATACAGCTCATGGTAACTCCTTAATCCTCTTCAGCTCACTTTTTACTCATCTGATTTCGATTTTGATTTTGATTTCTCTCTCTAGGGTTTTTTTTTTTAGTATGTATTGTTATTTGAAGAAGATGCTTGTAATGCAGGGCTTTTTTTTGCTATACTTGGTGGAGTTTTGTTTATACCAGGGTTCTACTATACAAGGATTGCATACTATGCTTACAAGGGTTATAAAGGTTTCTCTTTTTCCAATATACCTCCTGTCTAGAGTCGAGTTTCGATTATCGATTGTTGATTATCGAAGCTCTTCATACATTGTACAGCTACCTCATTTACTCTACCTAGATAAGCTTGTGAAGAAAAAAAAAATTAGTGTTGCTTCTAATAGGTTGCCTCGGATGTTGGATGTTGAATCTTTACTTGCTAAACTATGTAATCCTTTAACTCAGTATGGACACGATGTAATAATACGAGTGCTTGTTTGTTTACTGATGTTTTTCA</genome_strand>
        <mrna_strand>CTTCTTAAGCCAAACTCTGTTTCTGCTGAAAATAGGTATTTCCCACTAACCCTTCTTCTTCTTCAAGCATTACAAAGAAAATAGTGTTTGTTTCAATGGCGTACGTCGATCATGCTTTCTCAATTTCCGATGAGGATATGATGATGGAAGGTTCTCATGCCGATAACAATCGTGGACCTATCAAAGAGATCGCTCTTGCTGTTTCCCTTCTTGTATTTGGTACCCTAGCTATTTTTCTAGGTATTTTCATGGCAATCAATAAGGTCGGTGGCGATACAGCTCATG.............................................................................................................................GGCTTTTTTTTGCTATACTTGGTGGAGTTTTGTTTATACCAGGGTTCTACTATACAAGGATTGCATACTATGCTTACAAGGGTTATAAAGGTTTCTCTTTTTCCAATATACCTCCTGTCTAGAGTCGAGTTTCGATTATCGATTGTTGATTATCGAAGCTCTTCATACATTGTACAGCTACCTCATTTACTCTACCTAGATAAGCTTGTGAAGAAAAAAAAAATTAGTGTTGCTTCTAATAGGTTGCCTCGGATGTTGGATGTTGAATCTTTACTTGCTAAACTATGTAATCCTTTAACTCAGTATGGACACGATGTAATAATACGAGTGCTTGTTTGTTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462567" ref_strand="+" ref_description="SGN-E462567 [cPRO-12-G7]">
      <seq>cttctttagcctaactctgtttctgctgaaaaaggtatttcccactaacccttcttcttcttcttcaagcattacaaagaaatagtgtttgtttcaatggcgtatgtcgatcatgctttctcaatttccgatgaggatatgatgatggaaggttctcatgccgataacaatcgtggacccattaaagagatcgctcttgctgtttcccttcttgtatttggtaccctagctatttttctaggtattttcatggcaatcaataaggtcggtggcgatacagctcatgggattttttttgctatacttggtggagttctgtttataccagggttctactatacaaggattgcatactatgcttacaagggttataaaggtttctctttttccaatatacctcctgtctagagtcgattatcgattatcgattatcgaagctctcctacattgtacagctacctcatttactctacctagataagcttgtgaaaaaaaaaaattagtgttgcttgtaataggttacctcgggtattgggatgtgaatcattacttgctagactatgtaatcctttaactcagtatggacacgatgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38086" stop="39414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38386" g_stop="38670" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38671" i_stop="38795" i_length="125">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38796" g_stop="39114" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="595" r_length="309" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E462567" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38386" e_stop="38670"/>
          <exon e_start="38796" e_stop="39114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTAAGCCAAACTCTGTTTCTGCTGAAAATAGGTATTTCCCACTAA-CC--CTTCTTCTTCTTCAAGCATTACAAAGAAAATAGTGTTTGTTTCAATGGCGTACGTCGATCATGCTTTCTCAATTTCCGATGAGGATATGATGATGGAAGGTTCTCATGCCGATAACAATCGTGGACCTATCAAAGAGATCGCTCTTGCTGTTTCCCTTCTTGTATTTGGTACCCTAGCTATTTTTCTAGGTATTTTCATGGCAATCAATAAGGTCGGTGGCGATACAGCTCATGGTAACTCCTTAATCCTCTTCAGCTCACTTTTTACTCATCTGATTTCGATTTTGATTTTGATTTCTCTCTCTAGGGTTTTTTTTTTTAGTATGTATTGTTATTTGAAGAAGATGCTTGTAATGCAGGGCTTTTTTTTGCTATACTTGGTGGAGTTTTGTTTATACCAGGGTTCTACTATACAAGGATTGCATACTATGCTTACAAGGGTTATAAAGGTTTCTCTTTTTCCAATATACCTCCTGTCTAGAGTCGAGTTTCGATTATCGATTGTTGATTATCGAAGCTCTTCATACATTGTACAGCTACCTCATTTACTCTACCTAGATAAGCTTGTGAAGAAAAAAAAAATTAGTGTTGCTTCTAATAGGTTGCCTCGGATGTTGGATGTTGAATCTTTACTTGCTAAACTATGTAATCCTTTAACTCAGTATGGACACGATGTAA</genome_strand>
        <mrna_strand>CTTCTTTAGCCTAACTCTGTTTCTGCTGAAAA-AGGTATTTCCCACTAACCCTTCTTCTTCTTCTTCAAGCATTACAAAG-AAATAGTGTTTGTTTCAATGGCGTATGTCGATCATGCTTTCTCAATTTCCGATGAGGATATGATGATGGAAGGTTCTCATGCCGATAACAATCGTGGACCCATTAAAGAGATCGCTCTTGCTGTTTCCCTTCTTGTATTTGGTACCCTAGCTATTTTTCTAGGTATTTTCATGGCAATCAATAAGGTCGGTGGCGATACAGCTCATG.............................................................................................................................GGATTTTTTTTGCTATACTTGGTGGAGTTCTGTTTATACCAGGGTTCTACTATACAAGGATTGCATACTATGCTTACAAGGGTTATAAAGGTTTCTCTTTTTCCAATATACCTCCTGTCT--A---GAG--TCGATTATCGATTATCGATTATCGAAGCTC-TCCTACATTGTACAGCTACCTCATTTACTCTACCTAGATAAGCTTGTG-A-AAAAAAAAAATTAGTGTTGCTTGTAATAGGTTACCTCGGGTATTGGGATGTGAATCATTACTTGCTAGACTATGTAATCCTTTAACTCAGTATGGACACGATGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540721" ref_strand="+" ref_description="SGN-E540721 [TUS-61-C7]">
      <seq>taacccttcttcttcttcagcattacaaagaaaatagtgtttgtttcaatggcgtacgtcgatcatgctttctcaatttccgatgaggatatgatgatggaaggttctcatgccgataacaatcgtggacctatcaaagagatcgctcttgctgtttcccttcttgtatttggtaccctagctatttttctaggtattttcatggcaatcaataaggtcggtggcgatacagctcatgggcttttttttgctatacttggtggagttttgtttataccagggttctactatacaaggattgcatactatgcttacaagggttataaaggtttctctttttccaatatacctcctgtctagagtcgagtttcgattatcgattgttgattatcgaagctcttcatacattgtacagctacctcatttactctacctagataagcttgtgaagaaaaaaaaaattagtgttgcttctaataggttgcctcggatgttggatgttgaatctttacttgctaaactatgtaatcctttaactcagtatggacacgatgtaataatacgagtgcttgtttgtttaaaaaannnnnnnanannnanaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38132" stop="39437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38432" g_stop="38670" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38671" i_stop="38795" i_length="125">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38796" g_stop="39159" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="602" r_length="364" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E540721" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38432" e_stop="38670"/>
          <exon e_start="38796" e_stop="39159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCCTTCTTCTTCTTCAAGCATTACAAAGAAAATAGTGTTTGTTTCAATGGCGTACGTCGATCATGCTTTCTCAATTTCCGATGAGGATATGATGATGGAAGGTTCTCATGCCGATAACAATCGTGGACCTATCAAAGAGATCGCTCTTGCTGTTTCCCTTCTTGTATTTGGTACCCTAGCTATTTTTCTAGGTATTTTCATGGCAATCAATAAGGTCGGTGGCGATACAGCTCATGGTAACTCCTTAATCCTCTTCAGCTCACTTTTTACTCATCTGATTTCGATTTTGATTTTGATTTCTCTCTCTAGGGTTTTTTTTTTTAGTATGTATTGTTATTTGAAGAAGATGCTTGTAATGCAGGGCTTTTTTTTGCTATACTTGGTGGAGTTTTGTTTATACCAGGGTTCTACTATACAAGGATTGCATACTATGCTTACAAGGGTTATAAAGGTTTCTCTTTTTCCAATATACCTCCTGTCTAGAGTCGAGTTTCGATTATCGATTGTTGATTATCGAAGCTCTTCATACATTGTACAGCTACCTCATTTACTCTACCTAGATAAGCTTGTGAAGAAAAAAAAAATTAGTGTTGCTTCTAATAGGTTGCCTCGGATGTTGGATGTTGAATCTTTACTTGCTAAACTATGTAATCCTTTAACTCAGTATGGACACGATGTAATAATACGAGTGCTTGTTTGTTTACTGATGTTTTTCAATTGAATCG</genome_strand>
        <mrna_strand>TAACCCTTCTTCTTCTTC-AGCATTACAAAGAAAATAGTGTTTGTTTCAATGGCGTACGTCGATCATGCTTTCTCAATTTCCGATGAGGATATGATGATGGAAGGTTCTCATGCCGATAACAATCGTGGACCTATCAAAGAGATCGCTCTTGCTGTTTCCCTTCTTGTATTTGGTACCCTAGCTATTTTTCTAGGTATTTTCATGGCAATCAATAAGGTCGGTGGCGATACAGCTCATG.............................................................................................................................GGCTTTTTTTTGCTATACTTGGTGGAGTTTTGTTTATACCAGGGTTCTACTATACAAGGATTGCATACTATGCTTACAAGGGTTATAAAGGTTTCTCTTTTTCCAATATACCTCCTGTCTAGAGTCGAGTTTCGATTATCGATTGTTGATTATCGAAGCTCTTCATACATTGTACAGCTACCTCATTTACTCTACCTAGATAAGCTTGTGAAGAAAAAAAAAATTAGTGTTGCTTCTAATAGGTTGCCTCGGATGTTGGATGTTGAATCTTTACTTGCTAAACTATGTAATCCTTTAACTCAGTATGGACACGATGTAATAATACGAGTGCTTGTTTGTTTAAAAAANNNNNNNANANNNANAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548431" ref_strand="+" ref_description="SGN-E548431 [TUS-61-C7](-)">
      <seq>taacccttcttcttcttcaagcattacaaagaaaatagtgtttgtttcaatggcgtacgtcgatcatgctttctcaatttccgatgaggatatgatgatggaaggttctcatgccgataacaatcgtggacctatcaaagagatcgctcttgctgtttcccttcttgtatttggtaccctagctatttttctaggtattttcatggcaatcaataaggtcggtggcgatacagctcatgggcttttttttgctatacttggtggagttttgtttataccagggttctactatacaaggattgcatactatgcttacaagggttataaaggtttctctttttccaatatacctcctgtctagagtcgagtttcgattatcgattgttgattatcgaagctcttcatacattgtacagctacctcatttactctacctagataagcttgtgaagaaaaaaaaaattagtgttgcttctaataggttgcctcggatgttggatgttgaatctttacttgctaaactatgtaatcctttaactcagtatggacacgatgtaataatacgagtgcttgtttgtttaaaaaaaaaaaaaaaaaaagaaaaaaaaaaactcgaggggggcccggtccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38132" stop="39437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38432" g_stop="38670" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38671" i_stop="38795" i_length="125">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38796" g_stop="39137" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="581" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="582" polyA_stop="611"/>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E548431" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38432" e_stop="38670"/>
          <exon e_start="38796" e_stop="39137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCCTTCTTCTTCTTCAAGCATTACAAAGAAAATAGTGTTTGTTTCAATGGCGTACGTCGATCATGCTTTCTCAATTTCCGATGAGGATATGATGATGGAAGGTTCTCATGCCGATAACAATCGTGGACCTATCAAAGAGATCGCTCTTGCTGTTTCCCTTCTTGTATTTGGTACCCTAGCTATTTTTCTAGGTATTTTCATGGCAATCAATAAGGTCGGTGGCGATACAGCTCATGGTAACTCCTTAATCCTCTTCAGCTCACTTTTTACTCATCTGATTTCGATTTTGATTTTGATTTCTCTCTCTAGGGTTTTTTTTTTTAGTATGTATTGTTATTTGAAGAAGATGCTTGTAATGCAGGGCTTTTTTTTGCTATACTTGGTGGAGTTTTGTTTATACCAGGGTTCTACTATACAAGGATTGCATACTATGCTTACAAGGGTTATAAAGGTTTCTCTTTTTCCAATATACCTCCTGTCTAGAGTCGAGTTTCGATTATCGATTGTTGATTATCGAAGCTCTTCATACATTGTACAGCTACCTCATTTACTCTACCTAGATAAGCTTGTGAAGAAAAAAAAAATTAGTGTTGCTTCTAATAGGTTGCCTCGGATGTTGGATGTTGAATCTTTACTTGCTAAACTATGTAATCCTTTAACTCAGTATGGACACGATGTAATAATACGAGTGCTTGTTTGTTTA</genome_strand>
        <mrna_strand>TAACCCTTCTTCTTCTTCAAGCATTACAAAGAAAATAGTGTTTGTTTCAATGGCGTACGTCGATCATGCTTTCTCAATTTCCGATGAGGATATGATGATGGAAGGTTCTCATGCCGATAACAATCGTGGACCTATCAAAGAGATCGCTCTTGCTGTTTCCCTTCTTGTATTTGGTACCCTAGCTATTTTTCTAGGTATTTTCATGGCAATCAATAAGGTCGGTGGCGATACAGCTCATG.............................................................................................................................GGCTTTTTTTTGCTATACTTGGTGGAGTTTTGTTTATACCAGGGTTCTACTATACAAGGATTGCATACTATGCTTACAAGGGTTATAAAGGTTTCTCTTTTTCCAATATACCTCCTGTCTAGAGTCGAGTTTCGATTATCGATTGTTGATTATCGAAGCTCTTCATACATTGTACAGCTACCTCATTTACTCTACCTAGATAAGCTTGTGAAGAAAAAAAAAATTAGTGTTGCTTCTAATAGGTTGCCTCGGATGTTGGATGTTGAATCTTTACTTGCTAAACTATGTAATCCTTTAACTCAGTATGGACACGATGTAATAATACGAGTGCTTGTTTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291816" ref_strand="+" ref_description="SGN-E291816 [cLET-7-A12]">
      <seq>aacccttcttcttcttcaagcattacaaagaaaatagtgtttgcttcaatggcgtacgtcgatcatgctttctcaatttccgatgaggatatgatgatggaaggttctcatgccgataacaatcgtggacctatcaaagagatcgctcttgctgtttcccttcttgtatttggtaccctagctatttttctaggtattttcatggcaatcaataaggtcggtggcgatacagctcatgggcttttttttgctatacttggtggagctttgtttataccagggttctactatacaaggattgcatactatgcttacaagggttataaaggtttctctttttccaatatacctcctgtctagagtcgagtttcgattatcgattgttgattatcgaagctcttcatacattgtacagctacctcatttactctacctagataagcttgtgaagaaaaaaaaaattagtgttgcttctaataggttgcctcggatgttggatgttgaatctttacttgctaaactatgtaatcctttaactcagtatggacacgatgtaataatacgagtgcttgtttgtttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38133" stop="39437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38433" g_stop="38670" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38671" i_stop="38795" i_length="125">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38796" g_stop="39138" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="581" r_length="343" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E291816" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38433" e_stop="38670"/>
          <exon e_start="38796" e_stop="39138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTTCTTCTTCTTCAAGCATTACAAAGAAAATAGTGTTTGTTTCAATGGCGTACGTCGATCATGCTTTCTCAATTTCCGATGAGGATATGATGATGGAAGGTTCTCATGCCGATAACAATCGTGGACCTATCAAAGAGATCGCTCTTGCTGTTTCCCTTCTTGTATTTGGTACCCTAGCTATTTTTCTAGGTATTTTCATGGCAATCAATAAGGTCGGTGGCGATACAGCTCATGGTAACTCCTTAATCCTCTTCAGCTCACTTTTTACTCATCTGATTTCGATTTTGATTTTGATTTCTCTCTCTAGGGTTTTTTTTTTTAGTATGTATTGTTATTTGAAGAAGATGCTTGTAATGCAGGGCTTTTTTTTGCTATACTTGGTGGAGTTTTGTTTATACCAGGGTTCTACTATACAAGGATTGCATACTATGCTTACAAGGGTTATAAAGGTTTCTCTTTTTCCAATATACCTCCTGTCTAGAGTCGAGTTTCGATTATCGATTGTTGATTATCGAAGCTCTTCATACATTGTACAGCTACCTCATTTACTCTACCTAGATAAGCTTGTGAAGAAAAAAAAAATTAGTGTTGCTTCTAATAGGTTGCCTCGGATGTTGGATGTTGAATCTTTACTTGCTAAACTATGTAATCCTTTAACTCAGTATGGACACGATGTAATAATACGAGTGCTTGTTTGTTTAC</genome_strand>
        <mrna_strand>AACCCTTCTTCTTCTTCAAGCATTACAAAGAAAATAGTGTTTGCTTCAATGGCGTACGTCGATCATGCTTTCTCAATTTCCGATGAGGATATGATGATGGAAGGTTCTCATGCCGATAACAATCGTGGACCTATCAAAGAGATCGCTCTTGCTGTTTCCCTTCTTGTATTTGGTACCCTAGCTATTTTTCTAGGTATTTTCATGGCAATCAATAAGGTCGGTGGCGATACAGCTCATG.............................................................................................................................GGCTTTTTTTTGCTATACTTGGTGGAGCTTTGTTTATACCAGGGTTCTACTATACAAGGATTGCATACTATGCTTACAAGGGTTATAAAGGTTTCTCTTTTTCCAATATACCTCCTGTCTAGAGTCGAGTTTCGATTATCGATTGTTGATTATCGAAGCTCTTCATACATTGTACAGCTACCTCATTTACTCTACCTAGATAAGCTTGTGAAGAAAAAAAAAATTAGTGTTGCTTCTAATAGGTTGCCTCGGATGTTGGATGTTGAATCTTTACTTGCTAAACTATGTAATCCTTTAACTCAGTATGGACACGATGTAATAATACGAGTGCTTGTTTGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607301" ref_strand="+" ref_description="SGN-E607301 [23264]">
      <seq>ttcccactaacccttcttcttcttcttcttcaagcattacaaagaaatagtgtttgttccaatggcgtatgtcgatcatgctttctcaatttccgatgaggatatgatgatggaaggttctcatgccgataacaatcgtggacccattaaagagatcgctcttgctgtttcccttcttgtatttggtaccctcgctatttttctaggtattttcatggcaatcaataaggtcggtggcgatacagctcatgggcttttttttgctatacttggtggagttctgtttataccagggttctactatacaaggattgcatactatgcttacaagggttataaaggtttctctttttccaatatacctcctgtctagagtcgattatcgattattgattatcgaagctctcctacattgtacagctacctcatttactctacctagataagcttgtgaagaaaaaaaaattagtgttgctactaataggttacctcgggtattggatgttgaatcattactattacttgctagactatgtaatcctttaactcagtatggacacgatgtaataatacaagtgcttgcgtgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38125" stop="39437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38436" g_stop="38670" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="251" r_length="234" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38671" i_stop="38795" i_length="125">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38796" g_stop="39137" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="590" r_length="339" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E607301" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38436" e_stop="38670"/>
          <exon e_start="38796" e_stop="39137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTTCTTCTTCAAGCATTACAAAGAAAATAGTGTTTGTTTCAATGGCGTACGTCGATCATGCTTTCTCAATTTCCGATGAGGATATGATGATGGAAGGTTCTCATGCCGATAACAATCGTGGACCTATCAAAGAGATCGCTCTTGCTGTTTCCCTTCTTGTATTTGGTACCCTAGCTATTTTTCTAGGTATTTTCATGGCAATCAATAAGGTCGGTGGCGATACAGCTCATGGTAACTCCTTAATCCTCTTCAGCTCACTTTTTACTCATCTGATTTCGATTTTGATTTTGATTTCTCTCTCTAGGGTTTTTTTTTTTAGTATGTATTGTTATTTGAAGAAGATGCTTGTAATGCAGGGCTTTTTTTTGCTATACTTGGTGGAGTTTTGTTTATACCAGGGTTCTACTATACAAGGATTGCATACTATGCTTACAAGGGTTATAAAGGTTTCTCTTTTTCCAATATACCTCCTGTCTAGAGTCGAGTTTCGATTATCGATTGTTGATTATCGAAGCTCTTCATACATTGTACAGCTACCTCATTTACTCTACCTAGATAAGCTTGTGAAGAAAAAAAAAATTAGTGTTGCTTCTAATAGGTTGCCTCGGATGTTGGATGTTGAAT-----CT-TTACTTGCTAAACTATGTAATCCTTTAACTCAGTATGGACACGATGTAATAATACGAGTGCTTGTTTGTTTA</genome_strand>
        <mrna_strand>TCTTCTTCTTCTTCAAGCATTACAAAG-AAATAGTGTTTGTTCCAATGGCGTATGTCGATCATGCTTTCTCAATTTCCGATGAGGATATGATGATGGAAGGTTCTCATGCCGATAACAATCGTGGACCCATTAAAGAGATCGCTCTTGCTGTTTCCCTTCTTGTATTTGGTACCCTCGCTATTTTTCTAGGTATTTTCATGGCAATCAATAAGGTCGGTGGCGATACAGCTCATG.............................................................................................................................GGCTTTTTTTTGCTATACTTGGTGGAGTTCTGTTTATACCAGGGTTCTACTATACAAGGATTGCATACTATGCTTACAAGGGTTATAAAGGTTTCTCTTTTTCCAATATACCTCCTGTCT--A---GAG--TCGATTATCGATTATTGATTATCGAAGCTC-TCCTACATTGTACAGCTACCTCATTTACTCTACCTAGATAAGCTTGTGAAG-AAAAAAAAATTAGTGTTGCTACTAATAGGTTACCTCGGGTATTGGATGTTGAATCATTACTATTACTTGCTAGACTATGTAATCCTTTAACTCAGTATGGACACGATGTAATAATACAAGTGCTTGCGTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613570" ref_strand="+" ref_description="SGN-E613570 [63346]">
      <seq>cttcttcttcttcaagcattacaaagaaatagtgtttgttccaatggcgtatgtcgatcatgctttctcaatttccgatgaggatatgatgatggaaggttctcatgccgataacaatcgtggacccattaaagagatcgctcttgctgtttcccttcttgtatttggtaccctcgctatttttctaggtattttcatggcaatcaataaggtcggtggcgatacagctcatgggcttttttttgctatacttggtggagttctgtttataccagggttctactatacaaggattgcatactatgcttacaagggttataaaggtttctctttttccaatatacctcctgtctagagtcgattatcgattattgattatcgaagctctcctacattgtacagctacctcatttactctacctagataagcttgtgaagaaaaaaaaattagtgttgctactaataggttacctcgggtattggatgttgaatcattactattacttgctagactatgtaatcctttaactcagtatggacacgatgtaataatacaagtgcttgcgtgtttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38137" stop="39437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38437" g_stop="38670" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38671" i_stop="38795" i_length="125">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38796" g_stop="39138" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="573" r_length="340" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E613570" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38437" e_stop="38670"/>
          <exon e_start="38796" e_stop="39138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTCTTCAAGCATTACAAAGAAAATAGTGTTTGTTTCAATGGCGTACGTCGATCATGCTTTCTCAATTTCCGATGAGGATATGATGATGGAAGGTTCTCATGCCGATAACAATCGTGGACCTATCAAAGAGATCGCTCTTGCTGTTTCCCTTCTTGTATTTGGTACCCTAGCTATTTTTCTAGGTATTTTCATGGCAATCAATAAGGTCGGTGGCGATACAGCTCATGGTAACTCCTTAATCCTCTTCAGCTCACTTTTTACTCATCTGATTTCGATTTTGATTTTGATTTCTCTCTCTAGGGTTTTTTTTTTTAGTATGTATTGTTATTTGAAGAAGATGCTTGTAATGCAGGGCTTTTTTTTGCTATACTTGGTGGAGTTTTGTTTATACCAGGGTTCTACTATACAAGGATTGCATACTATGCTTACAAGGGTTATAAAGGTTTCTCTTTTTCCAATATACCTCCTGTCTAGAGTCGAGTTTCGATTATCGATTGTTGATTATCGAAGCTCTTCATACATTGTACAGCTACCTCATTTACTCTACCTAGATAAGCTTGTGAAGAAAAAAAAAATTAGTGTTGCTTCTAATAGGTTGCCTCGGATGTTGGATGTTGAATC-----T-TTACTTGCTAAACTATGTAATCCTTTAACTCAGTATGGACACGATGTAATAATACGAGTGCTTGTTTGTTTAC</genome_strand>
        <mrna_strand>CTTCTTCTTCTTCAAGCATTACAAAG-AAATAGTGTTTGTTCCAATGGCGTATGTCGATCATGCTTTCTCAATTTCCGATGAGGATATGATGATGGAAGGTTCTCATGCCGATAACAATCGTGGACCCATTAAAGAGATCGCTCTTGCTGTTTCCCTTCTTGTATTTGGTACCCTCGCTATTTTTCTAGGTATTTTCATGGCAATCAATAAGGTCGGTGGCGATACAGCTCATG.............................................................................................................................GGCTTTTTTTTGCTATACTTGGTGGAGTTCTGTTTATACCAGGGTTCTACTATACAAGGATTGCATACTATGCTTACAAGGGTTATAAAGGTTTCTCTTTTTCCAATATACCTCCTGTCT--A---GAG--TCGATTATCGATTATTGATTATCGAAGCTC-TCCTACATTGTACAGCTACCTCATTTACTCTACCTAGATAAGCTTGTGAAG-AAAAAAAAATTAGTGTTGCTACTAATAGGTTACCTCGGGTATTGGATGTTGAATCATTACTATTACTTGCTAGACTATGTAATCCTTTAACTCAGTATGGACACGATGTAATAATACAAGTGCTTGCGTGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292038" ref_strand="+" ref_description="SGN-E292038 [cLET-7-F12]">
      <seq>ttctcatgccgataacaatcgtggacctatcaaagagatcgctcttgctgtttcccttcttgtatttggtaccctagctatttttctaggtattttcatggcaatcaataaggtcggtggcatacagctcatgggcttttttttgctatacttggtggagttttgtttataccagggttctactatacaaggattgcatactatgcttacaagggttataaaggtttctctttttccaatatacctcctgtctagagtcgagtttcgattatcgattgatgattatcgaagctcttcatacattgtacagctacctcatttactctacctagataagcttgcgaagaaaaaaaaaattagtgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38237" stop="39328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38537" g_stop="38670" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38671" i_stop="38795" i_length="125">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38796" g_stop="39028" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="366" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E292038" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38537" e_stop="38670"/>
          <exon e_start="38796" e_stop="39028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCATGCCGATAACAATCGTGGACCTATCAAAGAGATCGCTCTTGCTGTTTCCCTTCTTGTATTTGGTACCCTAGCTATTTTTCTAGGTATTTTCATGGCAATCAATAAGGTCGGTGGCGATACAGCTCATGGTAACTCCTTAATCCTCTTCAGCTCACTTTTTACTCATCTGATTTCGATTTTGATTTTGATTTCTCTCTCTAGGGTTTTTTTTTTTAGTATGTATTGTTATTTGAAGAAGATGCTTGTAATGCAGGGCTTTTTTTTGCTATACTTGGTGGAGTTTTGTTTATACCAGGGTTCTACTATACAAGGATTGCATACTATGCTTACAAGGGTTATAAAGGTTTCTCTTTTTCCAATATACCTCCTGTCTAGAGTCGAGTTTCGATTATCGATTGTTGATTATCGAAGCTCTTCATACATTGTACAGCTACCTCATTTACTCTACCTAGATAAGCTTGTGAAGAAAAAAAAAATTAGTGTTGC</genome_strand>
        <mrna_strand>TTCTCATGCCGATAACAATCGTGGACCTATCAAAGAGATCGCTCTTGCTGTTTCCCTTCTTGTATTTGGTACCCTAGCTATTTTTCTAGGTATTTTCATGGCAATCAATAAGGTCGGTGGC-ATACAGCTCATG.............................................................................................................................GGCTTTTTTTTGCTATACTTGGTGGAGTTTTGTTTATACCAGGGTTCTACTATACAAGGATTGCATACTATGCTTACAAGGGTTATAAAGGTTTCTCTTTTTCCAATATACCTCCTGTCTAGAGTCGAGTTTCGATTATCGATTGATGATTATCGAAGCTCTTCATACATTGTACAGCTACCTCATTTACTCTACCTAGATAAGCTTGCGAAGAAAAAAAAAATTAGTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228010" ref_strand="+" ref_description="SGN-E228010 [cLEL-39-P16](-)">
      <seq>tatggtgcaacagctaacaatgctgcttctgaagttaattgttgttatctattacaatatataatctatgtacttttgttactggtataaagtttcttgcagttgatacattttgttgtttctactcatcattttggtgtcctatccaatactaatgttattgcaagtaatttgaagggaagtacccaatgttaaatcagttttgtttccttttgataaatgaatttttcaaatcccacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41354" stop="40515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41054" g_stop="40815" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40814" i_stop="40646" i_length="169">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.749" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40645" g_stop="40631" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="255" r_length="15" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E228010" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41054" e_stop="40815"/>
          <exon e_start="40645" e_stop="40631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGTGCAACAGCTAACAATGCTGCTTCTGAAGTTAATTGTTGTTATCTATTACAATATATAATCTATGTACTTTTGTTACTGGTATAAAGTTTCTTGCAGTTGATACATTTTGTTGTTTCTACTCATCATTTTGGTGTCCTATCCAATACTGATGTTATTGCAAGTAATTTGGAGGGAAGTACCCAATGTTAAATCAGTTTTGTTTCCTTTTGATAAATGAATAATTCAAAGACAACAGTGAAGGATATGTAACAGACACATCTACTCATTGCTTGTATAATTTGGTTATGTTACACTAATTCGTTTAAACGTGATTAGAAGCTAAAAACACCTCCCTCCCTCTGCTTAAATTTATTTGTTTACATCAAATTATAAAAACTTATGAATCTAGTGATGTTATATGTAGCATAAACACTAAAAA</genome_strand>
        <mrna_strand>TATGGTGCAACAGCTAACAATGCTGCTTCTGAAGTTAATTGTTGTTATCTATTACAATATATAATCTATGTACTTTTGTTACTGGTATAAAGTTTCTTGCAGTTGATACATTTTGTTGTTTCTACTCATCATTTTGGTGTCCTATCCAATACTAATGTTATTGCAAGTAATTTGAAGGGAAGTACCCAATGTTAAATCAGTTTTGTTTCCTTTTGATAAATGAATTTTTCAAATCCCACA.........................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345049" ref_strand="+" ref_description="SGN-E345049 [cTOF-22-J12]">
      <seq>taacactgaatgtacttctcctcctccgccgaggatcggtaagatcgggccgtacacggttttcatgacccctccacccacacccaaatccggttctaccgagctaccaccaccaattcagccgcaaccggttcagacaccaccggttcaggtggtcgataagtcatgtccggtttggtctcctccaatgcagtatgataaaccctctcagtcttcttttgggtttttctggaacgctgttgctaaagttcaaaatgctcatgcgagtttggatgaacaagtggcatactggtttggattgaatcagtcgaagtatcagtgggcattagatgattactatgagagcaaaaatattaacaaggccgaagaaaaagcaaaagtcgtagctagcaaattagagaatgtatgatatgccaaaggcgaaggtataaaatcttgttaggatgtgctatttgtttcctcttgttgcttctagtcctattcctgcacgctatgccaatatatatgtgtgattgtcacacatttttagctgctatggtgcagcagctaacaatgtcgcgttgtatggtgcaacagctaacaatgctgcttctgaagttaattgttgttatctattacaatatataatctatgtacttttgttactggtataaagtttcttgcagttgatacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="44606" stop="40645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44306" g_stop="44050" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44049" i_stop="43907" i_length="143">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43906" g_stop="43809" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="355" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43808" i_stop="41263" i_length="2546">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41262" g_stop="40946" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="672" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="673" polyA_stop="682"/>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E345049" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44306" e_stop="44050"/>
          <exon e_start="43906" e_stop="43809"/>
          <exon e_start="41262" e_stop="40946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACTGAATGTACTTCTCCTCCTCCGCCGAGGATCGGTAAGATCGGGCCGTACACGGTTTTCATGACCCCTCCACCCACACCCAAATCCGGTTCTACCGAGCTACCACCACCAATTCAGCCGCAACCGGTTCAGACACCACCGGTTCAGGTGGTCGATAAGTCATGTCCGGTTTGGTCTCCTCCAATGCAGTATGATAAACCCTCTCAGTCTTCTTTTGGGTTTTTCTGGAACGCTGTTGCTAAAGTTCAAAATGGTATCTTTTTTTTGCCCTATCTTTTTTAAAAAAAGATTGTAACTTTATTCAATTCTAGATTTTCAGATCTTGATTTCATGAACATTGTTCTTTTATTCCAGTTTATGTTAGTGGTTTTTAATTTGTATATGGATTTTTATTAGCTCATGCGAGTTTGGATGAACAAGTGGCATACTGGTTTGGATTGAATCAGTCGAAGTATCAGTGGGCATTAGATGATTACTATGAGAGCAAAAATATTGTAAGTTGTTAAGTTTCTTTCTTGAATTTGTTGAATTTCTTGTTTGGTGTTGTTCGGGTAAGGTTTGGAATCCAGAGGCGGAGTCACTCTATTCCTTACCACTGAGTCGTCAAATCAGTTTTTAGGAGTTCACAAATTAATATGCATATATAGTTATTCAATTAATCTAAAAAAAAGGCGTAGCTCCGCCCCTATGATGGATGTTATAGTTACAAGTTCATGCAATTTCGAAGTGATGCATCTTTTTTCTAGTTAGCACTTTAACTTTACCTCTTACTGTGGTACAGATTATGTTAATCATTGCAACAACAATTGTTTACATATGTGGATCAAGGATATGTTAACTTTAAATTTAGTCTTTGCTAGACTTTTTTCCTACAGTTCCTCTGCAGTTTTGCCTCCATGTCATGTCCTTTCTAGGACCATGTACCCGCAGGTTATGACTTCAGATTTTAGTTTTTTCTTAGGCATAACGAGGAAAAAGAGTCCTAATTAAAACAATGTGGTGGTGCTGTCTTTTGCAGCAACTAATAAGGTTTTATTTAGGATGAAGTCCTTGCTGGTGCTTTCCAGTTACAATCCCCTGCTTGAATCTCTTGAAAGTTGTCATGACTCAATATCTGGTCGAGCCATGACTGGCAGTCTAGCACCCGATGCCTTGACTTTACCAAGAAAACTTTCTTGGCCTTTCTACTCCTTATATTTGAAACACTATGCAACCCATTGTAGTTCTTAAAGAAAACTGAGAATGTAGTATGATATAAATACGGCTCTTTCTTTCTTTTCTGAAACTGTAACACTTTATATAAGAAGTTTACGTAGATGGTTGAGAGGTTCCCCATGTAGTTGTGCAGACTGTTGCTAGCCTACCTATGTTATAGTGACATCCAACATCTGGAGACCACCAACGTTGATCACTCTATTATACTCCTCTTTTCAAGAAGAAAATGGTAGATAATGAAATGTTTGCTTGAGGTTTTACAGGGCCGCGATGAATTACTTGTGCTGTGCATAAATGTGGTGGGCTTCCGATAAACAAACTAAAGGACATATATATGTTTTTGGCCGCTGTATTGTTCACGCACTCTTTAAGTCTTAAAGTTATATAGTTTACTTCATTTGTCTTGAAGTATCTGTGTCAGCCAGTGTGCAATGTGTGTGGATTCTTCAAAATTGGAAAACTTAGCAAAGAGATGCTCGATTTTGTACCTGATACTATCCCATGCACACTTGTAAGCAACTCCGTGAAACATAGCTACGAGATTAATGTGGAATTTGGGTACTACTGTCATAGTAGAGAAAATTGGGGATGGGTAGATAGGAGAGATTGATTGCAGATGCTAATAACTTTCACCAAGAACATAATTAGTGTAAGTTTTACACCAGTGACTGTCTTTGCTAGGAGCTCATACCACTTCCATTTCATGAATGTTTTTCTTCAGCTCTCACAAGGATTGTTTTTGCTTCGAAGTGTTGATTTTATATTTTACTCCAGCACTGAAATTTATTCAAATGGTTAAGATACCACGCCTCTTTGATCTTCATATCCTTTTCTGTTGGGGGCGTGATTTTGGGAAGATAATACTGATTCTTACAGATTTTAGCGGTGGGGGGCTCTTATGGGTCTTTTGTAAAGATAAGATGAAATTATGCTCCTTATGTTGTAGTACCTCCATTTTAGTTTATATGGTCGCGTAAAGAGTTTAAGAATAAAGACTTTTGGCACCTATCAAAGGTAATGTTTGAACTTGTGGTCACAAACATGCCATCAACGGAGACATGTTTTTCTTTTCTTTAGCATTTATTTGGTTTTGTTTATTAAAGGATCTAAGACGCTACTTCCTGACTCATACAAATATTGTAATAGGAAGTGTACATGACATGTTTCTGTTTGCTTTAGCATTTATCGGGTTTTGTTTGATAAAGGATAAAGAACTGCCTCGTTTCCATAGTATTAGAAACTGACGTTTAACTGGTCAGGAACTTTCTACATGAATCATCAACTGTCTGAAAACTTCCTAATGTTTAAATGATGAATACAACATGCTCTAAATTGAGAGCGTGATAGGGAGAGTTCTGTTTTTGGTGTCTGGTTACATTTCCTTCCAATTCTACATTTTTGATTGATTCTCTACACAGAATCACAAATAGTATGTTCAGAACATAACTAAGCAAAGTATTTTTTTTCTTAACATACCTATGAGCAGAGTCTTGAGAGAGTGGTGTGTACGCACCTTACCCCTTACATTGTGAAGGTAGAGAAATTGTTTCTGATAGATCATCGACTCAAGTAAAATATCTTCTCATAACATATGGTATGAGTCTCGTTGGGGTGCCACAATGGCTATCACAAAAAATAAATAATGAAATGTTACTAAAACATCAGGCTGCGATTTGAATCGTATCTGGGCCCATGAAATGCAATACTTATACTTTTCGATGTATTTGGAACGCCTACTTATTGTTAGATCACTTTTAATTGCTCTGTGAGACGTTTGTTTTTTGGCTTTTTTTGTTGCTTACTTAGTAAATGTTTTGTTTCACAGAACAAGGCCGAAGAAAAAGCAAAAGTCGTAGCTAGCAAATTAGAGAATGTATGATATGCCAAAGGCGAAGGTATAAAATCTTGTTAGGATGTGCTATTTGTTTCCTCTTGTTGCTTCTAGTCCTATTCCTGCACGCTATGCCAATATATATGTGTGATTGTCACACATTTTTAGCTGCTATGGTGCAGCAGCTAACAATGTCGCGTTGTATGGTGCAACAGCTAACAATGCTGCTTCTGAAGTTAATTGTTGTTATCTATTACAATATATAATCTATGTACTTTTGTTACTGGTATAAAGTTTCTTGCAGTTGATAC</genome_strand>
        <mrna_strand>TAACACTGAATGTACTTCTCCTCCTCCGCCGAGGATCGGTAAGATCGGGCCGTACACGGTTTTCATGACCCCTCCACCCACACCCAAATCCGGTTCTACCGAGCTACCACCACCAATTCAGCCGCAACCGGTTCAGACACCACCGGTTCAGGTGGTCGATAAGTCATGTCCGGTTTGGTCTCCTCCAATGCAGTATGATAAACCCTCTCAGTCTTCTTTTGGGTTTTTCTGGAACGCTGTTGCTAAAGTTCAAAATG...............................................................................................................................................CTCATGCGAGTTTGGATGAACAAGTGGCATACTGGTTTGGATTGAATCAGTCGAAGTATCAGTGGGCATTAGATGATTACTATGAGAGCAAAAATATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGCCGAAGAAAAAGCAAAAGTCGTAGCTAGCAAATTAGAGAATGTATGATATGCCAAAGGCGAAGGTATAAAATCTTGTTAGGATGTGCTATTTGTTTCCTCTTGTTGCTTCTAGTCCTATTCCTGCACGCTATGCCAATATATATGTGTGATTGTCACACATTTTTAGCTGCTATGGTGCAGCAGCTAACAATGTCGCGTTGTATGGTGCAACAGCTAACAATGCTGCTTCTGAAGTTAATTGTTGTTATCTATTACAATATATAATCTATGTACTTTTGTTACTGGTATAAAGTTTCTTGCAGTTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218870" ref_strand="+" ref_description="SGN-E218870 [cLEL-18-F6](-)">
      <seq>aggccgaagaaaaagcaaaagtcgtagctagcaaattagagaatgtatgatatgccaaaggcgaaggtataaaatcttgttaggatgtgctatttgtttcctcttgttgcttctagtcctattcctgcacgctatgccaatatatatgtgtgattgtcacacatttttagctgctatggtgcagcagctaacaatgtcgcgttgtatggtgcaacagctaacaatgctgcttctgaagttaattgttgttatctattacaatatataatctatgtacttttgttactggtataaagtttcttgcagttgatncaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41558" stop="40645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41258" g_stop="40946" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="314" polyA_stop="335"/>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E218870" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41258" e_stop="40946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCGAAGAAAAAGCAAAAGTCGTAGCTAGCAAATTAGAGAATGTATGATATGCCAAAGGCGAAGGTATAAAATCTTGTTAGGATGTGCTATTTGTTTCCTCTTGTTGCTTCTAGTCCTATTCCTGCACGCTATGCCAATATATATGTGTGATTGTCACACATTTTTAGCTGCTATGGTGCAGCAGCTAACAATGTCGCGTTGTATGGTGCAACAGCTAACAATGCTGCTTCTGAAGTTAATTGTTGTTATCTATTACAATATATAATCTATGTACTTTTGTTACTGGTATAAAGTTTCTTGCAGTTGATAC</genome_strand>
        <mrna_strand>AGGCCGAAGAAAAAGCAAAAGTCGTAGCTAGCAAATTAGAGAATGTATGATATGCCAAAGGCGAAGGTATAAAATCTTGTTAGGATGTGCTATTTGTTTCCTCTTGTTGCTTCTAGTCCTATTCCTGCACGCTATGCCAATATATATGTGTGATTGTCACACATTTTTAGCTGCTATGGTGCAGCAGCTAACAATGTCGCGTTGTATGGTGCAACAGCTAACAATGCTGCTTCTGAAGTTAATTGTTGTTATCTATTACAATATATAATCTATGTACTTTTGTTACTGGTATAAAGTTTCTTGCAGTTGATNC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734197" ref_strand="+" ref_description="SGN-E734197 [LB12AB08]">
      <seq>actgaatgtacttctcctcctccgccgaggatcggtaagatcgggccgtacacggttttcatgacccctccacccacacccaaatccggttctaccgagctaccaccaccaattcagccgcaaccggttcagacaccaccggttcaggtggtcgataagtcatgtccggtttggtctcctccaatgcagtatgataaaccctctcagtcttcttttgggtttttctggaacgctgttgctaaagttcaaaatgctcatgcgagtttggatgaacaagtggcatactggtttggattgaatcagtcgaagtatcagtgggcattagatgattactatgagagcaaaaatattaacaaggccgaagaaaaagcaaaagttgtagctagcaaattagagaatgtatgatatgccaaaggcgaaggtataaaatcttgttaggatgtgctatttgtttcctcttgttgcttctagtcctattcctgcacgctatgccaatatatatgtgtgattgtcacacatttttagctgctatggtgcagcagctaacaatgtcgcgttgtatggtgcaacagctaacaatgctgcttgtgaagttatcgttgttatctattacaatatataatctatgtacttttgttactggtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="44602" stop="40664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44302" g_stop="44050" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44049" i_stop="43907" i_length="143">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43906" g_stop="43809" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="351" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43808" i_stop="41263" i_length="2546">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41262" g_stop="40964" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="649" r_length="298" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E734197" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44302" e_stop="44050"/>
          <exon e_start="43906" e_stop="43809"/>
          <exon e_start="41262" e_stop="40964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAATGTACTTCTCCTCCTCCGCCGAGGATCGGTAAGATCGGGCCGTACACGGTTTTCATGACCCCTCCACCCACACCCAAATCCGGTTCTACCGAGCTACCACCACCAATTCAGCCGCAACCGGTTCAGACACCACCGGTTCAGGTGGTCGATAAGTCATGTCCGGTTTGGTCTCCTCCAATGCAGTATGATAAACCCTCTCAGTCTTCTTTTGGGTTTTTCTGGAACGCTGTTGCTAAAGTTCAAAATGGTATCTTTTTTTTGCCCTATCTTTTTTAAAAAAAGATTGTAACTTTATTCAATTCTAGATTTTCAGATCTTGATTTCATGAACATTGTTCTTTTATTCCAGTTTATGTTAGTGGTTTTTAATTTGTATATGGATTTTTATTAGCTCATGCGAGTTTGGATGAACAAGTGGCATACTGGTTTGGATTGAATCAGTCGAAGTATCAGTGGGCATTAGATGATTACTATGAGAGCAAAAATATTGTAAGTTGTTAAGTTTCTTTCTTGAATTTGTTGAATTTCTTGTTTGGTGTTGTTCGGGTAAGGTTTGGAATCCAGAGGCGGAGTCACTCTATTCCTTACCACTGAGTCGTCAAATCAGTTTTTAGGAGTTCACAAATTAATATGCATATATAGTTATTCAATTAATCTAAAAAAAAGGCGTAGCTCCGCCCCTATGATGGATGTTATAGTTACAAGTTCATGCAATTTCGAAGTGATGCATCTTTTTTCTAGTTAGCACTTTAACTTTACCTCTTACTGTGGTACAGATTATGTTAATCATTGCAACAACAATTGTTTACATATGTGGATCAAGGATATGTTAACTTTAAATTTAGTCTTTGCTAGACTTTTTTCCTACAGTTCCTCTGCAGTTTTGCCTCCATGTCATGTCCTTTCTAGGACCATGTACCCGCAGGTTATGACTTCAGATTTTAGTTTTTTCTTAGGCATAACGAGGAAAAAGAGTCCTAATTAAAACAATGTGGTGGTGCTGTCTTTTGCAGCAACTAATAAGGTTTTATTTAGGATGAAGTCCTTGCTGGTGCTTTCCAGTTACAATCCCCTGCTTGAATCTCTTGAAAGTTGTCATGACTCAATATCTGGTCGAGCCATGACTGGCAGTCTAGCACCCGATGCCTTGACTTTACCAAGAAAACTTTCTTGGCCTTTCTACTCCTTATATTTGAAACACTATGCAACCCATTGTAGTTCTTAAAGAAAACTGAGAATGTAGTATGATATAAATACGGCTCTTTCTTTCTTTTCTGAAACTGTAACACTTTATATAAGAAGTTTACGTAGATGGTTGAGAGGTTCCCCATGTAGTTGTGCAGACTGTTGCTAGCCTACCTATGTTATAGTGACATCCAACATCTGGAGACCACCAACGTTGATCACTCTATTATACTCCTCTTTTCAAGAAGAAAATGGTAGATAATGAAATGTTTGCTTGAGGTTTTACAGGGCCGCGATGAATTACTTGTGCTGTGCATAAATGTGGTGGGCTTCCGATAAACAAACTAAAGGACATATATATGTTTTTGGCCGCTGTATTGTTCACGCACTCTTTAAGTCTTAAAGTTATATAGTTTACTTCATTTGTCTTGAAGTATCTGTGTCAGCCAGTGTGCAATGTGTGTGGATTCTTCAAAATTGGAAAACTTAGCAAAGAGATGCTCGATTTTGTACCTGATACTATCCCATGCACACTTGTAAGCAACTCCGTGAAACATAGCTACGAGATTAATGTGGAATTTGGGTACTACTGTCATAGTAGAGAAAATTGGGGATGGGTAGATAGGAGAGATTGATTGCAGATGCTAATAACTTTCACCAAGAACATAATTAGTGTAAGTTTTACACCAGTGACTGTCTTTGCTAGGAGCTCATACCACTTCCATTTCATGAATGTTTTTCTTCAGCTCTCACAAGGATTGTTTTTGCTTCGAAGTGTTGATTTTATATTTTACTCCAGCACTGAAATTTATTCAAATGGTTAAGATACCACGCCTCTTTGATCTTCATATCCTTTTCTGTTGGGGGCGTGATTTTGGGAAGATAATACTGATTCTTACAGATTTTAGCGGTGGGGGGCTCTTATGGGTCTTTTGTAAAGATAAGATGAAATTATGCTCCTTATGTTGTAGTACCTCCATTTTAGTTTATATGGTCGCGTAAAGAGTTTAAGAATAAAGACTTTTGGCACCTATCAAAGGTAATGTTTGAACTTGTGGTCACAAACATGCCATCAACGGAGACATGTTTTTCTTTTCTTTAGCATTTATTTGGTTTTGTTTATTAAAGGATCTAAGACGCTACTTCCTGACTCATACAAATATTGTAATAGGAAGTGTACATGACATGTTTCTGTTTGCTTTAGCATTTATCGGGTTTTGTTTGATAAAGGATAAAGAACTGCCTCGTTTCCATAGTATTAGAAACTGACGTTTAACTGGTCAGGAACTTTCTACATGAATCATCAACTGTCTGAAAACTTCCTAATGTTTAAATGATGAATACAACATGCTCTAAATTGAGAGCGTGATAGGGAGAGTTCTGTTTTTGGTGTCTGGTTACATTTCCTTCCAATTCTACATTTTTGATTGATTCTCTACACAGAATCACAAATAGTATGTTCAGAACATAACTAAGCAAAGTATTTTTTTTCTTAACATACCTATGAGCAGAGTCTTGAGAGAGTGGTGTGTACGCACCTTACCCCTTACATTGTGAAGGTAGAGAAATTGTTTCTGATAGATCATCGACTCAAGTAAAATATCTTCTCATAACATATGGTATGAGTCTCGTTGGGGTGCCACAATGGCTATCACAAAAAATAAATAATGAAATGTTACTAAAACATCAGGCTGCGATTTGAATCGTATCTGGGCCCATGAAATGCAATACTTATACTTTTCGATGTATTTGGAACGCCTACTTATTGTTAGATCACTTTTAATTGCTCTGTGAGACGTTTGTTTTTTGGCTTTTTTTGTTGCTTACTTAGTAAATGTTTTGTTTCACAGAACAAGGCCGAAGAAAAAGCAAAAGTCGTAGCTAGCAAATTAGAGAATGTATGATATGCCAAAGGCGAAGGTATAAAATCTTGTTAGGATGTGCTATTTGTTTCCTCTTGTTGCTTCTAGTCCTATTCCTGCACGCTATGCCAATATATATGTGTGATTGTCACACATTTTTAGCTGCTATGGTGCAGCAGCTAACAATGTCGCGTTGTATGGTGCAACAGCTAACAATGCTGCTTCTGAAGTTAATTGTTGTTATCTATTACAATATATAATCTATGTACTTTTGTTACTGGTATAAA</genome_strand>
        <mrna_strand>ACTGAATGTACTTCTCCTCCTCCGCCGAGGATCGGTAAGATCGGGCCGTACACGGTTTTCATGACCCCTCCACCCACACCCAAATCCGGTTCTACCGAGCTACCACCACCAATTCAGCCGCAACCGGTTCAGACACCACCGGTTCAGGTGGTCGATAAGTCATGTCCGGTTTGGTCTCCTCCAATGCAGTATGATAAACCCTCTCAGTCTTCTTTTGGGTTTTTCTGGAACGCTGTTGCTAAAGTTCAAAATG...............................................................................................................................................CTCATGCGAGTTTGGATGAACAAGTGGCATACTGGTTTGGATTGAATCAGTCGAAGTATCAGTGGGCATTAGATGATTACTATGAGAGCAAAAATATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGCCGAAGAAAAAGCAAAAGTTGTAGCTAGCAAATTAGAGAATGTATGATATGCCAAAGGCGAAGGTATAAAATCTTGTTAGGATGTGCTATTTGTTTCCTCTTGTTGCTTCTAGTCCTATTCCTGCACGCTATGCCAATATATATGTGTGATTGTCACACATTTTTAGCTGCTATGGTGCAGCAGCTAACAATGTCGCGTTGTATGGTGCAACAGCTAACAATGCTGCTTGTGAAGTT-ATCGTTGTTATCTATTACAATATATAATCTATGTACTTTTGTTACTGGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734150" ref_strand="+" ref_description="SGN-E734150 [LB11DF09]">
      <seq>cgtatttctcctcctccgccgaggatcggtaagatcgggccgtacacggttttcatgacccctccacccacacccaaatccggttctaccgagctaccaccaccaattcagccgcaaccggttcagacaccaccggttcaggtggtcgataagtcatgtccggtttggtctcctccaatgcagtatgataaaccctctcagtcttcttttgggtttttctggaacgctgttgctaaagttcaaaatgctcatgcgagtttggatgaacaagtggcatactggtttggattgaatcagtcgaagtatcagtgggcattagatgattactatgagagcaaaaatattaacaaggccgaagaaaaagcaaaagttgtagctagcaaattagagaatgtatgatatgccaaaggcgaaggtataaaatcttgttaggatgtgctatttgtttcctcttgttgcttctagtcctattcctgcacgctatgccaatatatatgtgtgattgtcacacatttttagctgctatggtgcagcagctaacaatgtcgcgttgtatggtgcaacagctaacaatgctgcttgtgaagttatcgttgttatctattacaatatataatctatgtacttttgttactggtataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="44595" stop="40664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44296" g_stop="44050" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44049" i_stop="43907" i_length="143">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43906" g_stop="43809" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="345" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43808" i_stop="41263" i_length="2546">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41262" g_stop="40964" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="643" r_length="298" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E734150" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44296" e_stop="44050"/>
          <exon e_start="43906" e_stop="43809"/>
          <exon e_start="41262" e_stop="40964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACTTCTCCTCCTCCGCCGAGGATCGGTAAGATCGGGCCGTACACGGTTTTCATGACCCCTCCACCCACACCCAAATCCGGTTCTACCGAGCTACCACCACCAATTCAGCCGCAACCGGTTCAGACACCACCGGTTCAGGTGGTCGATAAGTCATGTCCGGTTTGGTCTCCTCCAATGCAGTATGATAAACCCTCTCAGTCTTCTTTTGGGTTTTTCTGGAACGCTGTTGCTAAAGTTCAAAATGGTATCTTTTTTTTGCCCTATCTTTTTTAAAAAAAGATTGTAACTTTATTCAATTCTAGATTTTCAGATCTTGATTTCATGAACATTGTTCTTTTATTCCAGTTTATGTTAGTGGTTTTTAATTTGTATATGGATTTTTATTAGCTCATGCGAGTTTGGATGAACAAGTGGCATACTGGTTTGGATTGAATCAGTCGAAGTATCAGTGGGCATTAGATGATTACTATGAGAGCAAAAATATTGTAAGTTGTTAAGTTTCTTTCTTGAATTTGTTGAATTTCTTGTTTGGTGTTGTTCGGGTAAGGTTTGGAATCCAGAGGCGGAGTCACTCTATTCCTTACCACTGAGTCGTCAAATCAGTTTTTAGGAGTTCACAAATTAATATGCATATATAGTTATTCAATTAATCTAAAAAAAAGGCGTAGCTCCGCCCCTATGATGGATGTTATAGTTACAAGTTCATGCAATTTCGAAGTGATGCATCTTTTTTCTAGTTAGCACTTTAACTTTACCTCTTACTGTGGTACAGATTATGTTAATCATTGCAACAACAATTGTTTACATATGTGGATCAAGGATATGTTAACTTTAAATTTAGTCTTTGCTAGACTTTTTTCCTACAGTTCCTCTGCAGTTTTGCCTCCATGTCATGTCCTTTCTAGGACCATGTACCCGCAGGTTATGACTTCAGATTTTAGTTTTTTCTTAGGCATAACGAGGAAAAAGAGTCCTAATTAAAACAATGTGGTGGTGCTGTCTTTTGCAGCAACTAATAAGGTTTTATTTAGGATGAAGTCCTTGCTGGTGCTTTCCAGTTACAATCCCCTGCTTGAATCTCTTGAAAGTTGTCATGACTCAATATCTGGTCGAGCCATGACTGGCAGTCTAGCACCCGATGCCTTGACTTTACCAAGAAAACTTTCTTGGCCTTTCTACTCCTTATATTTGAAACACTATGCAACCCATTGTAGTTCTTAAAGAAAACTGAGAATGTAGTATGATATAAATACGGCTCTTTCTTTCTTTTCTGAAACTGTAACACTTTATATAAGAAGTTTACGTAGATGGTTGAGAGGTTCCCCATGTAGTTGTGCAGACTGTTGCTAGCCTACCTATGTTATAGTGACATCCAACATCTGGAGACCACCAACGTTGATCACTCTATTATACTCCTCTTTTCAAGAAGAAAATGGTAGATAATGAAATGTTTGCTTGAGGTTTTACAGGGCCGCGATGAATTACTTGTGCTGTGCATAAATGTGGTGGGCTTCCGATAAACAAACTAAAGGACATATATATGTTTTTGGCCGCTGTATTGTTCACGCACTCTTTAAGTCTTAAAGTTATATAGTTTACTTCATTTGTCTTGAAGTATCTGTGTCAGCCAGTGTGCAATGTGTGTGGATTCTTCAAAATTGGAAAACTTAGCAAAGAGATGCTCGATTTTGTACCTGATACTATCCCATGCACACTTGTAAGCAACTCCGTGAAACATAGCTACGAGATTAATGTGGAATTTGGGTACTACTGTCATAGTAGAGAAAATTGGGGATGGGTAGATAGGAGAGATTGATTGCAGATGCTAATAACTTTCACCAAGAACATAATTAGTGTAAGTTTTACACCAGTGACTGTCTTTGCTAGGAGCTCATACCACTTCCATTTCATGAATGTTTTTCTTCAGCTCTCACAAGGATTGTTTTTGCTTCGAAGTGTTGATTTTATATTTTACTCCAGCACTGAAATTTATTCAAATGGTTAAGATACCACGCCTCTTTGATCTTCATATCCTTTTCTGTTGGGGGCGTGATTTTGGGAAGATAATACTGATTCTTACAGATTTTAGCGGTGGGGGGCTCTTATGGGTCTTTTGTAAAGATAAGATGAAATTATGCTCCTTATGTTGTAGTACCTCCATTTTAGTTTATATGGTCGCGTAAAGAGTTTAAGAATAAAGACTTTTGGCACCTATCAAAGGTAATGTTTGAACTTGTGGTCACAAACATGCCATCAACGGAGACATGTTTTTCTTTTCTTTAGCATTTATTTGGTTTTGTTTATTAAAGGATCTAAGACGCTACTTCCTGACTCATACAAATATTGTAATAGGAAGTGTACATGACATGTTTCTGTTTGCTTTAGCATTTATCGGGTTTTGTTTGATAAAGGATAAAGAACTGCCTCGTTTCCATAGTATTAGAAACTGACGTTTAACTGGTCAGGAACTTTCTACATGAATCATCAACTGTCTGAAAACTTCCTAATGTTTAAATGATGAATACAACATGCTCTAAATTGAGAGCGTGATAGGGAGAGTTCTGTTTTTGGTGTCTGGTTACATTTCCTTCCAATTCTACATTTTTGATTGATTCTCTACACAGAATCACAAATAGTATGTTCAGAACATAACTAAGCAAAGTATTTTTTTTCTTAACATACCTATGAGCAGAGTCTTGAGAGAGTGGTGTGTACGCACCTTACCCCTTACATTGTGAAGGTAGAGAAATTGTTTCTGATAGATCATCGACTCAAGTAAAATATCTTCTCATAACATATGGTATGAGTCTCGTTGGGGTGCCACAATGGCTATCACAAAAAATAAATAATGAAATGTTACTAAAACATCAGGCTGCGATTTGAATCGTATCTGGGCCCATGAAATGCAATACTTATACTTTTCGATGTATTTGGAACGCCTACTTATTGTTAGATCACTTTTAATTGCTCTGTGAGACGTTTGTTTTTTGGCTTTTTTTGTTGCTTACTTAGTAAATGTTTTGTTTCACAGAACAAGGCCGAAGAAAAAGCAAAAGTCGTAGCTAGCAAATTAGAGAATGTATGATATGCCAAAGGCGAAGGTATAAAATCTTGTTAGGATGTGCTATTTGTTTCCTCTTGTTGCTTCTAGTCCTATTCCTGCACGCTATGCCAATATATATGTGTGATTGTCACACATTTTTAGCTGCTATGGTGCAGCAGCTAACAATGTCGCGTTGTATGGTGCAACAGCTAACAATGCTGCTTCTGAAGTTAATTGTTGTTATCTATTACAATATATAATCTATGTACTTTTGTTACTGGTATAAA</genome_strand>
        <mrna_strand>CGTATTTCTCCTCCTCCGCCGAGGATCGGTAAGATCGGGCCGTACACGGTTTTCATGACCCCTCCACCCACACCCAAATCCGGTTCTACCGAGCTACCACCACCAATTCAGCCGCAACCGGTTCAGACACCACCGGTTCAGGTGGTCGATAAGTCATGTCCGGTTTGGTCTCCTCCAATGCAGTATGATAAACCCTCTCAGTCTTCTTTTGGGTTTTTCTGGAACGCTGTTGCTAAAGTTCAAAATG...............................................................................................................................................CTCATGCGAGTTTGGATGAACAAGTGGCATACTGGTTTGGATTGAATCAGTCGAAGTATCAGTGGGCATTAGATGATTACTATGAGAGCAAAAATATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGCCGAAGAAAAAGCAAAAGTTGTAGCTAGCAAATTAGAGAATGTATGATATGCCAAAGGCGAAGGTATAAAATCTTGTTAGGATGTGCTATTTGTTTCCTCTTGTTGCTTCTAGTCCTATTCCTGCACGCTATGCCAATATATATGTGTGATTGTCACACATTTTTAGCTGCTATGGTGCAGCAGCTAACAATGTCGCGTTGTATGGTGCAACAGCTAACAATGCTGCTTGTGAAGTT-ATCGTTGTTATCTATTACAATATATAATCTATGTACTTTTGTTACTGGTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732775" ref_strand="+" ref_description="SGN-E732775 [LB03AD11]">
      <seq>tcttcctccgccgaggatcggtaagatcgggccgtacacggttttcatgacccctccacccacacccaaatccggttctaccgagctaccaccaccaattcagccgcaaccggttcagacaccaccggttcaggtggtcgataagtcatgtccggtttggtctcctccaatgcagtatgataaaccctctcagtcttcttttgggtttttctggaacgctgttgctaaagttcaaaatgctcatgcgagtttggatgaacaagtggcatactggtttggattgaatcagtcgaagtatcagtgggcattagatgattactatgagagcaaaaatattaacaaggccgaagaaaaagcaaaagttgtagctagcaaattagagaatgtatgatatgccaaaggcgaaggtataaaatcttgttaggatgtgctatttgtttcctcttgttgcttctagtcctattcctgcacgctatgccaatatatatgtgtgattgtcacacatttttagctgctatggtgcagcagctaacaatgtcgcgttgtatggtgcaacagctaacaatgctgcttgtgaagttatcgttgttatctattacaatatataatctatgtacttttgttactggtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="44588" stop="40664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44288" g_stop="44050" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44049" i_stop="43907" i_length="143">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43906" g_stop="43809" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="337" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43808" i_stop="41263" i_length="2546">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41262" g_stop="40964" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="635" r_length="298" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E732775" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44288" e_stop="44050"/>
          <exon e_start="43906" e_stop="43809"/>
          <exon e_start="41262" e_stop="40964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCTCCGCCGAGGATCGGTAAGATCGGGCCGTACACGGTTTTCATGACCCCTCCACCCACACCCAAATCCGGTTCTACCGAGCTACCACCACCAATTCAGCCGCAACCGGTTCAGACACCACCGGTTCAGGTGGTCGATAAGTCATGTCCGGTTTGGTCTCCTCCAATGCAGTATGATAAACCCTCTCAGTCTTCTTTTGGGTTTTTCTGGAACGCTGTTGCTAAAGTTCAAAATGGTATCTTTTTTTTGCCCTATCTTTTTTAAAAAAAGATTGTAACTTTATTCAATTCTAGATTTTCAGATCTTGATTTCATGAACATTGTTCTTTTATTCCAGTTTATGTTAGTGGTTTTTAATTTGTATATGGATTTTTATTAGCTCATGCGAGTTTGGATGAACAAGTGGCATACTGGTTTGGATTGAATCAGTCGAAGTATCAGTGGGCATTAGATGATTACTATGAGAGCAAAAATATTGTAAGTTGTTAAGTTTCTTTCTTGAATTTGTTGAATTTCTTGTTTGGTGTTGTTCGGGTAAGGTTTGGAATCCAGAGGCGGAGTCACTCTATTCCTTACCACTGAGTCGTCAAATCAGTTTTTAGGAGTTCACAAATTAATATGCATATATAGTTATTCAATTAATCTAAAAAAAAGGCGTAGCTCCGCCCCTATGATGGATGTTATAGTTACAAGTTCATGCAATTTCGAAGTGATGCATCTTTTTTCTAGTTAGCACTTTAACTTTACCTCTTACTGTGGTACAGATTATGTTAATCATTGCAACAACAATTGTTTACATATGTGGATCAAGGATATGTTAACTTTAAATTTAGTCTTTGCTAGACTTTTTTCCTACAGTTCCTCTGCAGTTTTGCCTCCATGTCATGTCCTTTCTAGGACCATGTACCCGCAGGTTATGACTTCAGATTTTAGTTTTTTCTTAGGCATAACGAGGAAAAAGAGTCCTAATTAAAACAATGTGGTGGTGCTGTCTTTTGCAGCAACTAATAAGGTTTTATTTAGGATGAAGTCCTTGCTGGTGCTTTCCAGTTACAATCCCCTGCTTGAATCTCTTGAAAGTTGTCATGACTCAATATCTGGTCGAGCCATGACTGGCAGTCTAGCACCCGATGCCTTGACTTTACCAAGAAAACTTTCTTGGCCTTTCTACTCCTTATATTTGAAACACTATGCAACCCATTGTAGTTCTTAAAGAAAACTGAGAATGTAGTATGATATAAATACGGCTCTTTCTTTCTTTTCTGAAACTGTAACACTTTATATAAGAAGTTTACGTAGATGGTTGAGAGGTTCCCCATGTAGTTGTGCAGACTGTTGCTAGCCTACCTATGTTATAGTGACATCCAACATCTGGAGACCACCAACGTTGATCACTCTATTATACTCCTCTTTTCAAGAAGAAAATGGTAGATAATGAAATGTTTGCTTGAGGTTTTACAGGGCCGCGATGAATTACTTGTGCTGTGCATAAATGTGGTGGGCTTCCGATAAACAAACTAAAGGACATATATATGTTTTTGGCCGCTGTATTGTTCACGCACTCTTTAAGTCTTAAAGTTATATAGTTTACTTCATTTGTCTTGAAGTATCTGTGTCAGCCAGTGTGCAATGTGTGTGGATTCTTCAAAATTGGAAAACTTAGCAAAGAGATGCTCGATTTTGTACCTGATACTATCCCATGCACACTTGTAAGCAACTCCGTGAAACATAGCTACGAGATTAATGTGGAATTTGGGTACTACTGTCATAGTAGAGAAAATTGGGGATGGGTAGATAGGAGAGATTGATTGCAGATGCTAATAACTTTCACCAAGAACATAATTAGTGTAAGTTTTACACCAGTGACTGTCTTTGCTAGGAGCTCATACCACTTCCATTTCATGAATGTTTTTCTTCAGCTCTCACAAGGATTGTTTTTGCTTCGAAGTGTTGATTTTATATTTTACTCCAGCACTGAAATTTATTCAAATGGTTAAGATACCACGCCTCTTTGATCTTCATATCCTTTTCTGTTGGGGGCGTGATTTTGGGAAGATAATACTGATTCTTACAGATTTTAGCGGTGGGGGGCTCTTATGGGTCTTTTGTAAAGATAAGATGAAATTATGCTCCTTATGTTGTAGTACCTCCATTTTAGTTTATATGGTCGCGTAAAGAGTTTAAGAATAAAGACTTTTGGCACCTATCAAAGGTAATGTTTGAACTTGTGGTCACAAACATGCCATCAACGGAGACATGTTTTTCTTTTCTTTAGCATTTATTTGGTTTTGTTTATTAAAGGATCTAAGACGCTACTTCCTGACTCATACAAATATTGTAATAGGAAGTGTACATGACATGTTTCTGTTTGCTTTAGCATTTATCGGGTTTTGTTTGATAAAGGATAAAGAACTGCCTCGTTTCCATAGTATTAGAAACTGACGTTTAACTGGTCAGGAACTTTCTACATGAATCATCAACTGTCTGAAAACTTCCTAATGTTTAAATGATGAATACAACATGCTCTAAATTGAGAGCGTGATAGGGAGAGTTCTGTTTTTGGTGTCTGGTTACATTTCCTTCCAATTCTACATTTTTGATTGATTCTCTACACAGAATCACAAATAGTATGTTCAGAACATAACTAAGCAAAGTATTTTTTTTCTTAACATACCTATGAGCAGAGTCTTGAGAGAGTGGTGTGTACGCACCTTACCCCTTACATTGTGAAGGTAGAGAAATTGTTTCTGATAGATCATCGACTCAAGTAAAATATCTTCTCATAACATATGGTATGAGTCTCGTTGGGGTGCCACAATGGCTATCACAAAAAATAAATAATGAAATGTTACTAAAACATCAGGCTGCGATTTGAATCGTATCTGGGCCCATGAAATGCAATACTTATACTTTTCGATGTATTTGGAACGCCTACTTATTGTTAGATCACTTTTAATTGCTCTGTGAGACGTTTGTTTTTTGGCTTTTTTTGTTGCTTACTTAGTAAATGTTTTGTTTCACAGAACAAGGCCGAAGAAAAAGCAAAAGTCGTAGCTAGCAAATTAGAGAATGTATGATATGCCAAAGGCGAAGGTATAAAATCTTGTTAGGATGTGCTATTTGTTTCCTCTTGTTGCTTCTAGTCCTATTCCTGCACGCTATGCCAATATATATGTGTGATTGTCACACATTTTTAGCTGCTATGGTGCAGCAGCTAACAATGTCGCGTTGTATGGTGCAACAGCTAACAATGCTGCTTCTGAAGTTAATTGTTGTTATCTATTACAATATATAATCTATGTACTTTTGTTACTGGTATAAA</genome_strand>
        <mrna_strand>TCTTCCTCCGCCGAGGATCGGTAAGATCGGGCCGTACACGGTTTTCATGACCCCTCCACCCACACCCAAATCCGGTTCTACCGAGCTACCACCACCAATTCAGCCGCAACCGGTTCAGACACCACCGGTTCAGGTGGTCGATAAGTCATGTCCGGTTTGGTCTCCTCCAATGCAGTATGATAAACCCTCTCAGTCTTCTTTTGGGTTTTTCTGGAACGCTGTTGCTAAAGTTCAAAATG...............................................................................................................................................CTCATGCGAGTTTGGATGAACAAGTGGCATACTGGTTTGGATTGAATCAGTCGAAGTATCAGTGGGCATTAGATGATTACTATGAGAGCAAAAATATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGCCGAAGAAAAAGCAAAAGTTGTAGCTAGCAAATTAGAGAATGTATGATATGCCAAAGGCGAAGGTATAAAATCTTGTTAGGATGTGCTATTTGTTTCCTCTTGTTGCTTCTAGTCCTATTCCTGCACGCTATGCCAATATATATGTGTGATTGTCACACATTTTTAGCTGCTATGGTGCAGCAGCTAACAATGTCGCGTTGTATGGTGCAACAGCTAACAATGCTGCTTGTGAAGTT-ATCGTTGTTATCTATTACAATATATAATCTATGTACTTTTGTTACTGGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723224" ref_strand="+" ref_description="SGN-E723224 [FC19DC10]">
      <seq>cttctcctcctccgccgaggatcggtaagatcgggccgtacacggttttcatgacccctccacccacacccaaatccggttctaccgagctaccaccaccaattcagccgcaaccggttcaaacaccaccggttcaggtggtcgataagtcatgtccggtttggtctcctccaatgcagtatgataaaccctctcagtcttcttttgggtttttctggaacgctgttgctaaagttcaaaatgctcatgcgagtttggatgaacaagtggcatactggtttggattgaatcagtcgaagtatcagtgggcattacatgattactatgagagcaaaaatattaacaaggccgaaaaaaaagcaaaagttgtagctagcaaattagagaatgtatgatatgccaaaggcgaaggtataaaatcttgttaggatgtgctatttgtttcctcttgttgcttctagtcctattcctgcacgctatgccaatatatatgtgtgattgtcacacatttttagctgctatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="44592" stop="40779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44292" g_stop="44050" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44049" i_stop="43907" i_length="143">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43906" g_stop="43809" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="341" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43808" i_stop="41263" i_length="2546">
            <donor d_prob="0.866" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41262" g_stop="41079" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="525" r_length="184" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E723224" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44292" e_stop="44050"/>
          <exon e_start="43906" e_stop="43809"/>
          <exon e_start="41262" e_stop="41079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCCTCCTCCGCCGAGGATCGGTAAGATCGGGCCGTACACGGTTTTCATGACCCCTCCACCCACACCCAAATCCGGTTCTACCGAGCTACCACCACCAATTCAGCCGCAACCGGTTCAGACACCACCGGTTCAGGTGGTCGATAAGTCATGTCCGGTTTGGTCTCCTCCAATGCAGTATGATAAACCCTCTCAGTCTTCTTTTGGGTTTTTCTGGAACGCTGTTGCTAAAGTTCAAAATGGTATCTTTTTTTTGCCCTATCTTTTTTAAAAAAAGATTGTAACTTTATTCAATTCTAGATTTTCAGATCTTGATTTCATGAACATTGTTCTTTTATTCCAGTTTATGTTAGTGGTTTTTAATTTGTATATGGATTTTTATTAGCTCATGCGAGTTTGGATGAACAAGTGGCATACTGGTTTGGATTGAATCAGTCGAAGTATCAGTGGGCATTAGATGATTACTATGAGAGCAAAAATATTGTAAGTTGTTAAGTTTCTTTCTTGAATTTGTTGAATTTCTTGTTTGGTGTTGTTCGGGTAAGGTTTGGAATCCAGAGGCGGAGTCACTCTATTCCTTACCACTGAGTCGTCAAATCAGTTTTTAGGAGTTCACAAATTAATATGCATATATAGTTATTCAATTAATCTAAAAAAAAGGCGTAGCTCCGCCCCTATGATGGATGTTATAGTTACAAGTTCATGCAATTTCGAAGTGATGCATCTTTTTTCTAGTTAGCACTTTAACTTTACCTCTTACTGTGGTACAGATTATGTTAATCATTGCAACAACAATTGTTTACATATGTGGATCAAGGATATGTTAACTTTAAATTTAGTCTTTGCTAGACTTTTTTCCTACAGTTCCTCTGCAGTTTTGCCTCCATGTCATGTCCTTTCTAGGACCATGTACCCGCAGGTTATGACTTCAGATTTTAGTTTTTTCTTAGGCATAACGAGGAAAAAGAGTCCTAATTAAAACAATGTGGTGGTGCTGTCTTTTGCAGCAACTAATAAGGTTTTATTTAGGATGAAGTCCTTGCTGGTGCTTTCCAGTTACAATCCCCTGCTTGAATCTCTTGAAAGTTGTCATGACTCAATATCTGGTCGAGCCATGACTGGCAGTCTAGCACCCGATGCCTTGACTTTACCAAGAAAACTTTCTTGGCCTTTCTACTCCTTATATTTGAAACACTATGCAACCCATTGTAGTTCTTAAAGAAAACTGAGAATGTAGTATGATATAAATACGGCTCTTTCTTTCTTTTCTGAAACTGTAACACTTTATATAAGAAGTTTACGTAGATGGTTGAGAGGTTCCCCATGTAGTTGTGCAGACTGTTGCTAGCCTACCTATGTTATAGTGACATCCAACATCTGGAGACCACCAACGTTGATCACTCTATTATACTCCTCTTTTCAAGAAGAAAATGGTAGATAATGAAATGTTTGCTTGAGGTTTTACAGGGCCGCGATGAATTACTTGTGCTGTGCATAAATGTGGTGGGCTTCCGATAAACAAACTAAAGGACATATATATGTTTTTGGCCGCTGTATTGTTCACGCACTCTTTAAGTCTTAAAGTTATATAGTTTACTTCATTTGTCTTGAAGTATCTGTGTCAGCCAGTGTGCAATGTGTGTGGATTCTTCAAAATTGGAAAACTTAGCAAAGAGATGCTCGATTTTGTACCTGATACTATCCCATGCACACTTGTAAGCAACTCCGTGAAACATAGCTACGAGATTAATGTGGAATTTGGGTACTACTGTCATAGTAGAGAAAATTGGGGATGGGTAGATAGGAGAGATTGATTGCAGATGCTAATAACTTTCACCAAGAACATAATTAGTGTAAGTTTTACACCAGTGACTGTCTTTGCTAGGAGCTCATACCACTTCCATTTCATGAATGTTTTTCTTCAGCTCTCACAAGGATTGTTTTTGCTTCGAAGTGTTGATTTTATATTTTACTCCAGCACTGAAATTTATTCAAATGGTTAAGATACCACGCCTCTTTGATCTTCATATCCTTTTCTGTTGGGGGCGTGATTTTGGGAAGATAATACTGATTCTTACAGATTTTAGCGGTGGGGGGCTCTTATGGGTCTTTTGTAAAGATAAGATGAAATTATGCTCCTTATGTTGTAGTACCTCCATTTTAGTTTATATGGTCGCGTAAAGAGTTTAAGAATAAAGACTTTTGGCACCTATCAAAGGTAATGTTTGAACTTGTGGTCACAAACATGCCATCAACGGAGACATGTTTTTCTTTTCTTTAGCATTTATTTGGTTTTGTTTATTAAAGGATCTAAGACGCTACTTCCTGACTCATACAAATATTGTAATAGGAAGTGTACATGACATGTTTCTGTTTGCTTTAGCATTTATCGGGTTTTGTTTGATAAAGGATAAAGAACTGCCTCGTTTCCATAGTATTAGAAACTGACGTTTAACTGGTCAGGAACTTTCTACATGAATCATCAACTGTCTGAAAACTTCCTAATGTTTAAATGATGAATACAACATGCTCTAAATTGAGAGCGTGATAGGGAGAGTTCTGTTTTTGGTGTCTGGTTACATTTCCTTCCAATTCTACATTTTTGATTGATTCTCTACACAGAATCACAAATAGTATGTTCAGAACATAACTAAGCAAAGTATTTTTTTTCTTAACATACCTATGAGCAGAGTCTTGAGAGAGTGGTGTGTACGCACCTTACCCCTTACATTGTGAAGGTAGAGAAATTGTTTCTGATAGATCATCGACTCAAGTAAAATATCTTCTCATAACATATGGTATGAGTCTCGTTGGGGTGCCACAATGGCTATCACAAAAAATAAATAATGAAATGTTACTAAAACATCAGGCTGCGATTTGAATCGTATCTGGGCCCATGAAATGCAATACTTATACTTTTCGATGTATTTGGAACGCCTACTTATTGTTAGATCACTTTTAATTGCTCTGTGAGACGTTTGTTTTTTGGCTTTTTTTGTTGCTTACTTAGTAAATGTTTTGTTTCACAGAACAAGGCCGAAGAAAAAGCAAAAGTCGTAGCTAGCAAATTAGAGAATGTATGATATGCCAAAGGCGAAGGTATAAAATCTTGTTAGGATGTGCTATTTGTTTCCTCTTGTTGCTTCTAGTCCTATTCCTGCACGCTATGCCAATATATATGTGTGATTGTCACACATTTTTAGCTGCTATGGT</genome_strand>
        <mrna_strand>CTTCTCCTCCTCCGCCGAGGATCGGTAAGATCGGGCCGTACACGGTTTTCATGACCCCTCCACCCACACCCAAATCCGGTTCTACCGAGCTACCACCACCAATTCAGCCGCAACCGGTTCAAACACCACCGGTTCAGGTGGTCGATAAGTCATGTCCGGTTTGGTCTCCTCCAATGCAGTATGATAAACCCTCTCAGTCTTCTTTTGGGTTTTTCTGGAACGCTGTTGCTAAAGTTCAAAATG...............................................................................................................................................CTCATGCGAGTTTGGATGAACAAGTGGCATACTGGTTTGGATTGAATCAGTCGAAGTATCAGTGGGCATTACATGATTACTATGAGAGCAAAAATATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGCCGAAAAAAAAGCAAAAGTTGTAGCTAGCAAATTAGAGAATGTATGATATGCCAAAGGCGAAGGTATAAAATCTTGTTAGGATGTGCTATTTGTTTCCTCTTGTTGCTTCTAGTCCTATTCCTGCACGCTATGCCAATATATATGTGTGATTGTCACACATTTTTAGCTGCTATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744799" ref_strand="+" ref_description="SGN-E744799 [GI|5734441]">
      <seq>aaaaggagaaacaggcctcagttaatcatggcgataatgatgccgacttttcagatacttactggcattaacatcatacttttttatgccccagtattgtttcagagtatggggtttaaaagagcagcctctctgtattcctctgctttgactggtgcagttcttgcttcatctacacttttatcaatggccactgtcgatagatggggtcgaagagttcttcttattaccggtggaatccaaatgatcatctgtcaggttattgttgcgataatcttgggactcaaatttggaagtgacaaggagctatcaagaggttactcgattatagtagttgttttcatttgcctctttgtagcggcgtttggatactcatgggggcctcttggatggaccgtgccaagtgaaattttccctttagagacgagatcagcaggccaaagtatcacagttactgtgaatttgttcttcacatttgcgatagcacagtctttcctctcacttttatgtgctatgaggttcgggattttcctgtttttctcctgttggattgctgtcatgacgatattcatctatctgttcttgcctgaaacgaagggagttccgattgaagagatgatgcgtctttgggaaaagcattggttctggaagaagatcgtttcggaggatcaacaagttaaaaacaccaatggactcaaccatgcttgaggtaggtacattgttaacaaggtgaaaggtgaatagagaaggctatcttgttcatgtagaattttggtcttctatatgtatatgtaaaagtgtgaactttttacttttaagaatgtcactttctatgaatacacgagtgaaatgatattttgataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="47341" stop="45390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47041" g_stop="46784" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46783" i_stop="46295" i_length="489">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46294" g_stop="45691" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="862" r_length="604" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="863" polyA_stop="878"/>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E744799" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47041" e_stop="46784"/>
          <exon e_start="46294" e_stop="45691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGAGAAACAGGCCTCAGTTAATCATGGCGATTTTGATGCCGACTTTTCAGATACTTACTGGCATTAACATCATACTTTTTTATGCCCCAGTATTGTTTCAGAGTATGGGGTTTAAAAGAGCAGCCTCTCTGTATTCCTCTGCTTTGACTGGTGCAGTTCTTGCTTCATCTACACTTTTATCAATGGCCACTGTCGATAGATGGGGTCGAAGAGTTCTTCTTATTACCGGTGGAATCCAAATGATCATCTGTCAGGTAAAGATTTTCTACTTACTTGGTCAGCCTTTATGCCATCCCGTGTTCTGATTGATAGCCAACATAAAACTCGTCAATTTCTAGCATACATGTCTATATTGTCAATACACTTGTTAGTCATCACTCGTCAGCCTTGTATAGTGATCTATTAGAAGTTACGTGTAATGCATAAACAAACACTCGAACTTAGCCTCAGCTGACAAGTAAGCACTTCAACTTTGTGAGTGCACATCGAGACTCCTCAATAACTAAACACTCCAACTCGTCTATGTCTGGTGGACCTCGGACACTGACGTGGCACATACATGTTATAGGTGTCTGGATGATCATTTTCTAAGTTGGAATGTTCAACTAACGCAATGGAGATGAGTTAAGGTGCGAGGTGTCATAGGTTTACCTATCACCTGAGGCCAAGTTTTGTTACTGTCAGTATATAGAAGTTAAAAATTAATCGGTATATCATATGGAAGATAATATGCTTTCCTTCAGGTTATTGTTGCGATAATCTTGGGACTCAAATTTGGAAGTGACAAGGAGCTATCAAGAGGTTACTCGATTATAGTAGTTGTTTTCATTTGCCTCTTTGTAGCGGCGTTTGGATACTCATGGGGGCCTCTTGGATGGACCGTGCCAAGTGAAATTTTCCCTTTAGAGACGAGATCAGCAGGCCAAAGTATCACAGTTACTGTGAATTTGTTCTTCACATTTGCGATAGCACAGTCTTTCCTCTCACTTTTATGTGCTATGAGGTTCGGGATTTTCCTGTTTTTCTCCTGTTGGATTGCTGTCATGACGATATTCATCTATCTGTTCTTGCCTGAAACGAAGGGAGTTCCGATTGAAGAGATGATGCGTCTTTGGGAAAAGCATTGGTTCTGGAAGAAGATCGTTTCGGAGGATCAACAAGTTAAAAACACCAATGGACTCAACCATGCTTGAGGTAGGTACATTGTTAACAAGGTGAAAGGTGAATAGAGAAGGCTATCTTGTTCATGTAGAATTTTGGTCTTCTATATGTATATGTAAAAGTGTGAACTTTTTACTTTTAAGAATGTCACTTTCTATGAATACACGAGTGAAATGATATTTTGAT</genome_strand>
        <mrna_strand>AAAAGGAGAAACAGGCCTCAGTTAATCATGGCGATAATGATGCCGACTTTTCAGATACTTACTGGCATTAACATCATACTTTTTTATGCCCCAGTATTGTTTCAGAGTATGGGGTTTAAAAGAGCAGCCTCTCTGTATTCCTCTGCTTTGACTGGTGCAGTTCTTGCTTCATCTACACTTTTATCAATGGCCACTGTCGATAGATGGGGTCGAAGAGTTCTTCTTATTACCGGTGGAATCCAAATGATCATCTGTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGTTGCGATAATCTTGGGACTCAAATTTGGAAGTGACAAGGAGCTATCAAGAGGTTACTCGATTATAGTAGTTGTTTTCATTTGCCTCTTTGTAGCGGCGTTTGGATACTCATGGGGGCCTCTTGGATGGACCGTGCCAAGTGAAATTTTCCCTTTAGAGACGAGATCAGCAGGCCAAAGTATCACAGTTACTGTGAATTTGTTCTTCACATTTGCGATAGCACAGTCTTTCCTCTCACTTTTATGTGCTATGAGGTTCGGGATTTTCCTGTTTTTCTCCTGTTGGATTGCTGTCATGACGATATTCATCTATCTGTTCTTGCCTGAAACGAAGGGAGTTCCGATTGAAGAGATGATGCGTCTTTGGGAAAAGCATTGGTTCTGGAAGAAGATCGTTTCGGAGGATCAACAAGTTAAAAACACCAATGGACTCAACCATGCTTGAGGTAGGTACATTGTTAACAAGGTGAAAGGTGAATAGAGAAGGCTATCTTGTTCATGTAGAATTTTGGTCTTCTATATGTATATGTAAAAGTGTGAACTTTTTACTTTTAAGAATGTCACTTTCTATGAATACACGAGTGAAATGATATTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420595" ref_strand="+" ref_description="SGN-E420595 [STM-31-B7]">
      <seq>gaacagaaagaacaaatgtacatatattattaagaaaattttaacaaaatttctcttctttgattcatagtttttttttcttttcaagaaattgaagatggcaggaggaggaattgcttcaattggtgtaaacaaagaaagagctgaaaattacaatggaaaactcactctttatgtcatcatagcatgtattgttgctgctgttggaggttcactctttggatatgatattggaatttcagggggagtgacatcgatggatgaatttcttcgacgattcttctactctgtatacctaaagaagcagcacgtccacgaagacaactattgcaagtataataaccaagttcttgctgcatttacctcgtctttatacatggctggtttagttgcatctctggtagcatctcctatcacaaggaaccatggacgtcgtgcaagtataatatgcggcggcattagtttctttcttggagcagatcttaatgccgctgctatcaaccttggcatgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49950" stop="47612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49723" g_stop="49468" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49467" i_stop="48188" i_length="1280">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48187" g_stop="47912" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="518" r_length="276" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E420595" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49723" e_stop="49468"/>
          <exon e_start="48187" e_stop="47912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAAAGAGGGGAATGTACATAATATTAATAAGAAAATTTTTAACAAAATTTCTCTGTTTTTGATTCAGAGTTTTATTATTATTATTATTATTTTCAAGAAATTGAAGATGGCAGGAGGAGGAATTGGTTCAACTGGTGTAAACAAAGGAAGAGCTGAAAATTACAATGGAAAACTCACTCTTTATGTCATCATAGCATGTATTGTTGCTGCTGTTGGAGGTTCACTCTTTGGATATGATATTGGAATTTCAGGTGAATAATTATGGTAATTATTGGGGAAAAAATTATTGTAATTTTACTTTATGAATTGATGATGAAATATTAGAATTTTTTCCCCCTTTTTATAGAGAATTGGAAGAAAGATGAATTACTAATATGCTTGTTCAGATTTTTTTAAAATGTTAATGTATTAAAATTTTCATGTTTTTACATGTTTTAAGGATCTGACACGAGTGTAACAACGAGTTTAATTCACTCCCCTTTTAAAAAGAGCTTTTCCTTTTCTTTTTATGCTATGTGGTAGGTGATTAGGAGGGGTGGGGGGTGGGGGGTTAGAATTGGAAGAAGATGAATTATTGTTATGTTGTTCGGATTTTTCAAAAATGTCAATCATGCTCGGGTTCTAATGGATTTGTGGCACGAGGTGGTAGTATTTTTGAAAAATCGGAACAATGTGTTACATTGCAGTACTGCTTCTCCAGAAAAAGGGACTCACTCTTTGTGCTCGGATTTTTCAAGAATATCAATCATTTTTATGAACATTTTTGGTAAATTGGAGTCAATGAATTATACCTACTCTTCTGGAACTTCCACTATTTTCGAAAAAAAAAGGTGAAATAACAAAGATTAAAAAGTGGATAGTGAAATAACAAATGCACGGTAAGACTGTGAACAGTAGAGCGTTGTGGTTTGGCTTTCCTCGGACTCTGCGAATAGTGGAAGTTTAATGCACCGTGATGAGATTTTATAGTGTTTGTAGATTCTCAACTTGTAGAGTGAAAAGACTATATCATTATTTTGTTTAGTTGTATGATCATTTTCAGCGTGATCGTTGACTGTGTGACCATCTCATTTAAAATCTTTGAGATTCAATCTACGAGCGTATGCCTGTTTTCATATCATGTTGAATTGTTGTGTGACTGTTTTGTCTTAAGAGTTTAGGAATGCCACTTTAATCATGTCAAATCCTTTAAAAAGTACATACTTTTGATGGATTCGACACGAGTGAAGTTGTATTTTGGAAAATTCTAGCATGAATTACACCTGAACCTCCGGCAGACCGGGATGGATGGCTATGACTACTCTACAGTTAGTCTCTGGAACTTCTTGAACAACGAACTGCGTCATTGACATTGAAATGTTCGACTAGCTAAGGGATTCAAATGAATTAAGGACATCTGTGGTCTGTGGTCTGTTTGCTTTGATACAATGTTGAAGTTAATGTGTGACCGTCTAATCTTAAAATCTAAATTGTTAAGAGAGGGTAAACTTTTGTTTACTAAACTATATCTTTACTGCATGCATGATAACAGGGGGGGTGACGTCGATGGATGAATTTCTTCGTCGATTCTTCTACTCAGTATACCTAAAGAAGCAGCACGTTCACGAAGACAACTATTGCAAGTATAATAACCAAGTTCTTGCTGCATTTACCTCGTCTTTATACATGGCTGGTTTAGTTGCATCTCTGGTAGCATCTCCTATCACAAGGAACTATGGACGTCGTGCAAGTATAATATGCGGTGGCATTAGTTTCTTCATTGGAGCAGTTCTCAATGCCGCTGCTGTCAACCTTGGCATGCTTCTTT</genome_strand>
        <mrna_strand>GAACAGAAAGAACA-AATGTACATA-TATTATTAAGAAAA-TTTTAACAAAATTTCTCT-TCTTTGATTC--A-T---AGT-TT-TT-TT-TTCTTTTCAAGAAATTGAAGATGGCAGGAGGAGGAATTGCTTCAATTGGTGTAAACAAAGAAAGAGCTGAAAATTACAATGGAAAACTCACTCTTTATGTCATCATAGCATGTATTGTTGCTGCTGTTGGAGGTTCACTCTTTGGATATGATATTGGAATTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAGTGACATCGATGGATGAATTTCTTCGACGATTCTTCTACTCTGTATACCTAAAGAAGCAGCACGTCCACGAAGACAACTATTGCAAGTATAATAACCAAGTTCTTGCTGCATTTACCTCGTCTTTATACATGGCTGGTTTAGTTGCATCTCTGGTAGCATCTCCTATCACAAGGAACCATGGACGTCGTGCAAGTATAATATGCGGCGGCATTAGTTTCTTTCTTGGAGCAGATCTTAATGCCGCTGCTATCAACCTTGGCATGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406493" ref_strand="+" ref_description="SGN-E406493 [PPI-4-A3]">
      <seq>acatatattattaagaaaattttaacaaaatttctcttctttgattcatagtttttttttcttttcaagaaattgaagatggcaggaggaggaattgcttcaattggtgttaacaaagaaagagctgaaaattacaatggaaaactcactctttatgtcatcatagcatgtattgttgctgctgttggaggttcactctttggatatgatattggaatttcagggggagtgacatcgatggatgaatttcttcgacgattcttctactctgtatacctaaagaagcagcacgtccacgaagacaactattgcaagtataataaccaagttcttgctgcatttacctcgtctttatacatggctggtttagttgcatctctggtagcatctcctatcacaaggaaccatggacgtcgtgcaagtataatatgcggtggcattagtttctttcttggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="49950" stop="47653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49703" g_stop="49468" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49467" i_stop="48188" i_length="1280">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48187" g_stop="47953" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="458" r_length="235" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E406493" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.028" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49703" e_stop="49468"/>
          <exon e_start="48187" e_stop="47953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATAATATTAATAAGAAAATTTTTAACAAAATTTCTCTGTTTTTGATTCAGAGTTTTATTATTATTATTATTATTTTCAAGAAATTGAAGATGGCAGGAGGAGGAATTGGTTCAACTGGTGTAAACAAAGGAAGAGCTGAAAATTACAATGGAAAACTCACTCTTTATGTCATCATAGCATGTATTGTTGCTGCTGTTGGAGGTTCACTCTTTGGATATGATATTGGAATTTCAGGTGAATAATTATGGTAATTATTGGGGAAAAAATTATTGTAATTTTACTTTATGAATTGATGATGAAATATTAGAATTTTTTCCCCCTTTTTATAGAGAATTGGAAGAAAGATGAATTACTAATATGCTTGTTCAGATTTTTTTAAAATGTTAATGTATTAAAATTTTCATGTTTTTACATGTTTTAAGGATCTGACACGAGTGTAACAACGAGTTTAATTCACTCCCCTTTTAAAAAGAGCTTTTCCTTTTCTTTTTATGCTATGTGGTAGGTGATTAGGAGGGGTGGGGGGTGGGGGGTTAGAATTGGAAGAAGATGAATTATTGTTATGTTGTTCGGATTTTTCAAAAATGTCAATCATGCTCGGGTTCTAATGGATTTGTGGCACGAGGTGGTAGTATTTTTGAAAAATCGGAACAATGTGTTACATTGCAGTACTGCTTCTCCAGAAAAAGGGACTCACTCTTTGTGCTCGGATTTTTCAAGAATATCAATCATTTTTATGAACATTTTTGGTAAATTGGAGTCAATGAATTATACCTACTCTTCTGGAACTTCCACTATTTTCGAAAAAAAAAGGTGAAATAACAAAGATTAAAAAGTGGATAGTGAAATAACAAATGCACGGTAAGACTGTGAACAGTAGAGCGTTGTGGTTTGGCTTTCCTCGGACTCTGCGAATAGTGGAAGTTTAATGCACCGTGATGAGATTTTATAGTGTTTGTAGATTCTCAACTTGTAGAGTGAAAAGACTATATCATTATTTTGTTTAGTTGTATGATCATTTTCAGCGTGATCGTTGACTGTGTGACCATCTCATTTAAAATCTTTGAGATTCAATCTACGAGCGTATGCCTGTTTTCATATCATGTTGAATTGTTGTGTGACTGTTTTGTCTTAAGAGTTTAGGAATGCCACTTTAATCATGTCAAATCCTTTAAAAAGTACATACTTTTGATGGATTCGACACGAGTGAAGTTGTATTTTGGAAAATTCTAGCATGAATTACACCTGAACCTCCGGCAGACCGGGATGGATGGCTATGACTACTCTACAGTTAGTCTCTGGAACTTCTTGAACAACGAACTGCGTCATTGACATTGAAATGTTCGACTAGCTAAGGGATTCAAATGAATTAAGGACATCTGTGGTCTGTGGTCTGTTTGCTTTGATACAATGTTGAAGTTAATGTGTGACCGTCTAATCTTAAAATCTAAATTGTTAAGAGAGGGTAAACTTTTGTTTACTAAACTATATCTTTACTGCATGCATGATAACAGGGGGGGTGACGTCGATGGATGAATTTCTTCGTCGATTCTTCTACTCAGTATACCTAAAGAAGCAGCACGTTCACGAAGACAACTATTGCAAGTATAATAACCAAGTTCTTGCTGCATTTACCTCGTCTTTATACATGGCTGGTTTAGTTGCATCTCTGGTAGCATCTCCTATCACAAGGAACTATGGACGTCGTGCAAGTATAATATGCGGTGGCATTAGTTTCTTCATTGGAGC</genome_strand>
        <mrna_strand>ACATA-TATTATTAAGAAAA-TTTTAACAAAATTTCTCT-TCTTTGATTC--A----TAGT-TT-TT-TT-TTCTTTTCAAGAAATTGAAGATGGCAGGAGGAGGAATTGCTTCAATTGGTGTTAACAAAGAAAGAGCTGAAAATTACAATGGAAAACTCACTCTTTATGTCATCATAGCATGTATTGTTGCTGCTGTTGGAGGTTCACTCTTTGGATATGATATTGGAATTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAGTGACATCGATGGATGAATTTCTTCGACGATTCTTCTACTCTGTATACCTAAAGAAGCAGCACGTCCACGAAGACAACTATTGCAAGTATAATAACCAAGTTCTTGCTGCATTTACCTCGTCTTTATACATGGCTGGTTTAGTTGCATCTCTGGTAGCATCTCCTATCACAAGGAACCATGGACGTCGTGCAAGTATAATATGCGGTGGCATTAGTTTCTTTCTTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447923" ref_strand="-" ref_description="SGN-E447923 [cSTS-4-O17]">
      <seq>tttagttttgggtgcaggcacccttcctttcggtactctgttcattgagctcttcttcatcatgtcgagtctctggatgggtcgtgtctactatgtctttggcttcctcctcattgtcatgatccttctcgtcatagtctgtgctgaggtctctcttgttctgacttacatgcatctttgtgtggaggactggaaatggtggtggaaatccttctttgcctccggatcagttgctatatacattttcctctactccgttaactatctaatctttgatctcaagagcttgagcgggcctgtttctgctaccctttaccttggatattccctcttcatggtccttgccatcatgctcgcgacaggcacggtcgggttcctttcctccttctggtttgtacatttcttgttctcttcagtgaagctggattaaagaagtctcttatggcagaaagaaacaaaagaaccattgaagaaacagctgcagatgtgtctttaaatcattcttgtttactttttattgtcatattactatcattttgtagggtatttggaagagaaagccaataaactcctcaagttttgttaaaaaaaaaaaaaaaaaaaaaaactcgaagcctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78092" stop="76907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77792" g_stop="77208" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="587" polyA_stop="608"/>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E447923" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447923" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77792" e_stop="77208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTTTTGGGTGCAGGCACCCTTCCTTTCGGTACTCTGTTCATTGAGCTCTTCTTCATCATGTCAAGTCTCTGGATGGGTCGTGTCTACTATGTCTTTGGCTTCCTCCTCATTGTCATGATCCTTCTCGTCGTTGTCTGTGCTGAGGTGTCTCTTGTTCTTACTTACATGCATCTTTGTGTGGAGGACTGGAAATGGTGGTGGAAATCCTTCTTTGCCTCCGGATCAGTTGCTATATACATTTTCCTCTATTCCGTTAACTATCTAATCTTCGATCTCAAGAGCTTGAGCGGGCCTGTTTCTGCTACCCTTTACCTTGGATATTCCCTCTTTATGGTACTTGCCATCATGCTCGCGACAGGCACAGTCGGGTTTCTTTCCTCCTTCTGGTTTGTACATTACTTGTTCTCTTCAGTGAAGCTGGATTAAAGAAGTCTCTTATGATATAAAGAAACAAAAGAACCATTGAAG-AACAGCCGCGGATGTGTCTTTAAGTCATTCTTGTTTACTTTTTATTGTCATATTACTATCATTTTGTAGGGTATTTGGAAGAGAAAGCCAATAAACTCCTCAAGTTTTGTTAA</genome_strand>
        <mrna_strand>TTTAGTTTTGGGTGCAGGCACCCTTCCTTTCGGTACTCTGTTCATTGAGCTCTTCTTCATCATGTCGAGTCTCTGGATGGGTCGTGTCTACTATGTCTTTGGCTTCCTCCTCATTGTCATGATCCTTCTCGTCATAGTCTGTGCTGAGGTCTCTCTTGTTCTGACTTACATGCATCTTTGTGTGGAGGACTGGAAATGGTGGTGGAAATCCTTCTTTGCCTCCGGATCAGTTGCTATATACATTTTCCTCTACTCCGTTAACTATCTAATCTTTGATCTCAAGAGCTTGAGCGGGCCTGTTTCTGCTACCCTTTACCTTGGATATTCCCTCTTCATGGTCCTTGCCATCATGCTCGCGACAGGCACGGTCGGGTTCCTTTCCTCCTTCTGGTTTGTACATTTCTTGTTCTCTTCAGTGAAGCTGGATTAAAGAAGTCTCTTATGGCAGAAAGAAACAAAAGAACCATTGAAGAAACAGCTGCAGATGTGTCTTTAAATCATTCTTGTTTACTTTTTATTGTCATATTACTATCATTTTGTAGGGTATTTGGAAGAGAAAGCCAATAAACTCCTCAAGTTTTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422635" ref_strand="-" ref_description="SGN-E422635 [STM-40-B14]">
      <seq>attgtcatgatccttctcgtcatagtctgtgctgaggtctctcttgttctgacttacatgcatctttgtgtggaggactggaaatggtggtggaaatccttctttgcctccggatcagttgctatatacattttcctctactccgttaactatctaatctttgatctcaagagcttgagcgggcctgtttctgctaccctttaccttggatattccctcttcatggtccttgccatcatgctcgcgacaggcacggtcgggttcctttcctccttctggtttgtacatttcttgttctcttcagtgaagctggattaaagaagtctcttatggcagaaagaaacaaaagaaccattgaagaaacagctgcagatgtgtctttaaatcattcttgtttactttttattgtcatattactatcattttgtagggtatttggaagagaaagccaataaactcctcaagttttgttaaaaaaaaaaaaaaaaaaaaaaactcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="77980" stop="76907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77680" g_stop="77208" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="475" polyA_stop="496"/>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E422635" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422635" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77680" e_stop="77208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTCATGATCCTTCTCGTCGTTGTCTGTGCTGAGGTGTCTCTTGTTCTTACTTACATGCATCTTTGTGTGGAGGACTGGAAATGGTGGTGGAAATCCTTCTTTGCCTCCGGATCAGTTGCTATATACATTTTCCTCTATTCCGTTAACTATCTAATCTTCGATCTCAAGAGCTTGAGCGGGCCTGTTTCTGCTACCCTTTACCTTGGATATTCCCTCTTTATGGTACTTGCCATCATGCTCGCGACAGGCACAGTCGGGTTTCTTTCCTCCTTCTGGTTTGTACATTACTTGTTCTCTTCAGTGAAGCTGGATTAAAGAAGTCTCTTATGATATAAAGAAACAAAAGAACCATTGAAG-AACAGCCGCGGATGTGTCTTTAAGTCATTCTTGTTTACTTTTTATTGTCATATTACTATCATTTTGTAGGGTATTTGGAAGAGAAAGCCAATAAACTCCTCAAGTTTTGTTAA</genome_strand>
        <mrna_strand>ATTGTCATGATCCTTCTCGTCATAGTCTGTGCTGAGGTCTCTCTTGTTCTGACTTACATGCATCTTTGTGTGGAGGACTGGAAATGGTGGTGGAAATCCTTCTTTGCCTCCGGATCAGTTGCTATATACATTTTCCTCTACTCCGTTAACTATCTAATCTTTGATCTCAAGAGCTTGAGCGGGCCTGTTTCTGCTACCCTTTACCTTGGATATTCCCTCTTCATGGTCCTTGCCATCATGCTCGCGACAGGCACGGTCGGGTTCCTTTCCTCCTTCTGGTTTGTACATTTCTTGTTCTCTTCAGTGAAGCTGGATTAAAGAAGTCTCTTATGGCAGAAAGAAACAAAAGAACCATTGAAGAAACAGCTGCAGATGTGTCTTTAAATCATTCTTGTTTACTTTTTATTGTCATATTACTATCATTTTGTAGGGTATTTGGAAGAGAAAGCCAATAAACTCCTCAAGTTTTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422636" ref_strand="+" ref_description="SGN-E422636 [STM-40-B14]">
      <seq>gtacgggccccccctcgagactagttctctctctcgaaaatgagcctgtttcgtttacttatgaggtgaactttgtggaaagtgacattaagtggccatcaagatgggatgcttatttgaagatggaaggtgcaaaggtgcattggttttctatccttaactcccttatggtgatcactttcttggctggaattgtgcttgtaatcttcttgaggactgtcaggcgggatctgacaaggtatgaggaacttgacaaagaggctcaagctcagatgaatgaggagttatccgggtggaaacttgtggtaagtgatgttttcagggctccaagtaatccaggacttttgtgtgcgatggttggagatggggttcaaattctagggatgggtgttgtgactatcatgtttgctgccctcggatttatgtccccagcttctcgtggaacattgattaccggcatgctattcttctatatgattcttggtgttgccgctggttatgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="78877" stop="77808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78576" g_stop="78108" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="505" r_length="469" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E422636" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78576" e_stop="78108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGAGCCTGTTTCGTTTACTTATGAGGTGAACTTTGTGGAAAGTGACATTAAGTGGCCATCAAGATGGGATGCGTATTTGAAGATGGAAGGTGCAAAGGTGCACTGGTTCTCTATCCTTAACTCCCTTATGGTGATCACTTTCTTGGCTGGAATTGTGCTTGTAATCTTCTTGAGGACTGTCAGGCGGGATCTTACAAGGTATGAGGAACTTGACAAAGAGGCTCAAGCTCAGATGAATGAGGAGTTATCCGGGTGGAAACTTGTGGTGAGTGATGTTTTCAGGGCTCCAAGTAATCCAGCACTTTTGTGTGCGATGGTTGGAGATGGGGTTCAAATTCTAGGGATGGGTGTTGTGACTATCATGTTTGCTGCCCTCGGATTTATGTCCCCAGCTTCTCGTGGAACATTGATTACTGGTATGCTATTCTTCTATATGATTCTTGGTATTGCAGCTGGTTATGTTGC</genome_strand>
        <mrna_strand>AAAATGAGCCTGTTTCGTTTACTTATGAGGTGAACTTTGTGGAAAGTGACATTAAGTGGCCATCAAGATGGGATGCTTATTTGAAGATGGAAGGTGCAAAGGTGCATTGGTTTTCTATCCTTAACTCCCTTATGGTGATCACTTTCTTGGCTGGAATTGTGCTTGTAATCTTCTTGAGGACTGTCAGGCGGGATCTGACAAGGTATGAGGAACTTGACAAAGAGGCTCAAGCTCAGATGAATGAGGAGTTATCCGGGTGGAAACTTGTGGTAAGTGATGTTTTCAGGGCTCCAAGTAATCCAGGACTTTTGTGTGCGATGGTTGGAGATGGGGTTCAAATTCTAGGGATGGGTGTTGTGACTATCATGTTTGCTGCCCTCGGATTTATGTCCCCAGCTTCTCGTGGAACATTGATTACCGGCATGCTATTCTTCTATATGATTCTTGGTGTTGCCGCTGGTTATGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421224" ref_strand="+" ref_description="SGN-E421224 [STM-32-B15]">
      <seq>ataacatgacattttcaacatctagatgggaattttgaccctttctttccacatttgaaagatgattaatgtgaatatttttttaacttttggcacctaatccttgggatttaggacgtctaacagcaactaaaggattggttatgccttgtgaacttctcccaagtcccatgccttcaacaaaacccatctttgccatcatctttgatccaaacccctttgtgtgtctctcaaatcctgcaaatccaacagatgactccttcctgatggatttcccgcttccttttacaacttcagcaccacgaacagatgatttgggtagagaatccttctttgctgatgatctactacttgtttctaggatttcagctcccaatccaagagcttttggtcgttggcgagcttcgatgggctcggaaatgccctgtccatctttccctaaacctctaccttcttgataacccatttttgccatgagtttcgagccaatacctgtggtgtgcatctcgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="81501" stop="82539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81752" g_stop="82239" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="512" r_length="487" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E421224" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81752" e_stop="82239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAAATATGAACATTTCTTTCCACAGTTGAAAGAT-ATT-ATGTGATTTTTTTTCTTCTAACTTTTGGCACCTAATCCTTGCGATTTAGGACGTCTAACAGCAACTAAAGGATTGGTTATGCCTTGTGAACTTCTACCAAGTCCCATACCTTCAACAAAACCCATCTTTGCCATAATCTTTGATCCAAACCCCTTTGTGTGTCTCTCAAATCCTGCAAATCCAACAGATGACTCCTTCCTGATGGATTTCCCACTTCCACCGACAACTTCAGCACCACGACCAGATGATTTGGGTAGAGAATCCTTCTTTCCTGATGATCTAATACTTGTTTCTGGGATTTCAGCTCCCAATCCAAGAGCTTTTGGTCGTTGGCGAGCTTCGATGGGCTCAGAAATACCCTGTCCATCTTTCCCTAAGCCTCTGCCTTCTTGATAACCCATTTTTGCCATGAGTTTTGAGCCAATACCTGTAGTGTGCATCTCGAAT</genome_strand>
        <mrna_strand>ATGGGAATTTTGACCCTTTCTTTCCACATTTGAAAGATGATTAATGTGA-ATATTTT-TT-TAACTTTTGGCACCTAATCCTTGGGATTTAGGACGTCTAACAGCAACTAAAGGATTGGTTATGCCTTGTGAACTTCTCCCAAGTCCCATGCCTTCAACAAAACCCATCTTTGCCATCATCTTTGATCCAAACCCCTTTGTGTGTCTCTCAAATCCTGCAAATCCAACAGATGACTCCTTCCTGATGGATTTCCCGCTTCCTTTTACAACTTCAGCACCACGAACAGATGATTTGGGTAGAGAATCCTTCTTTGCTGATGATCTACTACTTGTTTCTAGGATTTCAGCTCCCAATCCAAGAGCTTTTGGTCGTTGGCGAGCTTCGATGGGCTCGGAAATGCCCTGTCCATCTTTCCCTAAACCTCTACCTTCTTGATAACCCATTTTTGCCATGAGTTTCGAGCCAATACCTGTGGTGTGCATCTCGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294007" ref_strand="+" ref_description="SGN-E294007 [cLET-13-H10]">
      <seq>cctatgctcttcctgtctcctttgtttcaagtggtatcatgcgttcggagacagaagttgaggagaaatcaatcgaaacaacccagacaaccaccattgtccatgaaacaaaggttgtgaccaactcagtcgaatacggtgcattcgagatgcacactacaggtattggctcaaaactcatggcaaaaatgggttatcaagaaggcagaggcttagggaaagatggacagggtatttctgagcccatcgaagctcgccaacgaccaaaagctcttggattgggagctgaaatcccagaaacaagtattagatcatcaggaaagaaggattctctacccaaatcatctggtcgtggtgctgaagttgtcggtggaagtgggaaatccatcaggaaggagtcatctgttggatttgcaggatttgagagacacacaaaggggtttggatcaaagattatggcaaagatgggttttgttgaaggtatgggacttggtagaagttcacaaggcataaccaatcctttagttgctgttagacgtcctaaatcgcaaggattaggtgccaaaagttagaagaaaaaaaatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="82681" stop="81494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82381" g_stop="81794" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E294007" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82381" e_stop="81794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATGCTCTTCCTGTCTCCTTTGTTTCAAGTGGTATCATGCGTTCAGAGACAGAAGTTGAGGAGAAATCAATCGAAACAACCCAGACAACCACCATTGTCCATGAAACAAAGGTTGTGACCAACTCAGTCGAATACGGTGCATTCGAGATGCACACTACAGGTATTGGCTCAAAACTCATGGCAAAAATGGGTTATCAAGAAGGCAGAGGCTTAGGGAAAGATGGACAGGGTATTTCTGAGCCCATCGAAGCTCGCCAACGACCAAAAGCTCTTGGATTGGGAGCTGAAATCCCAGAAACAAGTATTAGATCATCAGGAAAGAAGGATTCTCTACCCAAATCATCTGGTCGTGGTGCTGAAGTTGTCGGTGGAAGTGGGAAATCCATCAGGAAGGAGTCATCTGTTGGATTTGCAGGATTTGAGAGACACACAAAGGGGTTTGGATCAAAGATTATGGCAAAGATGGGTTTTGTTGAAGGTATGGGACTTGGTAGAAGTTCACAAGGCATAACCAATCCTTTAGTTGCTGTTAGACGTCCTAAATCGCAAGGATTAGGTGCCAAAAGTTAGAAGAAAAAAAATCACA</genome_strand>
        <mrna_strand>CCTATGCTCTTCCTGTCTCCTTTGTTTCAAGTGGTATCATGCGTTCGGAGACAGAAGTTGAGGAGAAATCAATCGAAACAACCCAGACAACCACCATTGTCCATGAAACAAAGGTTGTGACCAACTCAGTCGAATACGGTGCATTCGAGATGCACACTACAGGTATTGGCTCAAAACTCATGGCAAAAATGGGTTATCAAGAAGGCAGAGGCTTAGGGAAAGATGGACAGGGTATTTCTGAGCCCATCGAAGCTCGCCAACGACCAAAAGCTCTTGGATTGGGAGCTGAAATCCCAGAAACAAGTATTAGATCATCAGGAAAGAAGGATTCTCTACCCAAATCATCTGGTCGTGGTGCTGAAGTTGTCGGTGGAAGTGGGAAATCCATCAGGAAGGAGTCATCTGTTGGATTTGCAGGATTTGAGAGACACACAAAGGGGTTTGGATCAAAGATTATGGCAAAGATGGGTTTTGTTGAAGGTATGGGACTTGGTAGAAGTTCACAAGGCATAACCAATCCTTTAGTTGCTGTTAGACGTCCTAAATCGCAAGGATTAGGTGCCAAAAGTTAGAAGAAAAAAAATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549769" ref_strand="+" ref_description="SGN-E549769 [TUS-6-O7]">
      <seq>gtgacgaggattctgatttcacagtcacgggtatacaaagttatagaaaggccgtaaatgcagccaaaaactcttcaaagggtagtggtggacaatctggcccaagcaatttgtttaaaatgccgataaatccacgtgggcaaaaagacagcagcaagaaacgaagggatcagaaaacagtctcctatgctcttcctgtctcctttgtttcaagtggtatcatgcgttcagagacagaagttgaggagaaatcaatcgaaacaacccagacaaccaccattgtccatgaaacaaaggttgtgaccaactcagtcgaatacggtgcattcgagatgcacactacaggtattggctcaaaactcatggcaaaaatgggttatcaagaaggcagaggcttagggaaagatggacagggtatttctgagcccatcgaagctcgccaacgaccaaaagctcttggattgggagctgaaatcccagaaacaagtattagatcatcaggaaagaaggattctctacccaaatcatctggtcgtggtgctgaagttgtcggtggaagtgggaaatccatcaggaaggagtcatctgttggatttgcaggatttgagagacacacaaaggggtttggatcaaagattatggcaaagatgggttttgttgaaggtatgggacttggtagaagttcacaaggcataaccaatcctttagttgctgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="82864" stop="81548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82564" g_stop="81848" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E549769" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82564" e_stop="81848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACGAGGATTCTGATTTCACAGTCACGGGTATACAAAGTTATAGAAAGGATGTAAATGCAGCCAAAAACTCTTCAAAGGGTAGTGGTGGACAATCTGGCCCAAGCAATTTGTTTAAAATGCCGATAAATCCACGTGGGCAAAAAGACAGCAGCAAGAAACGAAGGGATCAGAAAACAGTCTCCTATGCTCTTCCTGTCTCCTTTGTTTCAAGTGGTATCATGCGTTCAGAGACAGAAGTTGAGGAGAAATCAATCGAAACAACCCAGACAACCACCATTGTCCATGAAACAAAGGTTGTGACCAACTCAGTCGAATACGGTGCATTCGAGATGCACACTACAGGTATTGGCTCAAAACTCATGGCAAAAATGGGTTATCAAGAAGGCAGAGGCTTAGGGAAAGATGGACAGGGTATTTCTGAGCCCATCGAAGCTCGCCAACGACCAAAAGCTCTTGGATTGGGAGCTGAAATCCCAGAAACAAGTATTAGATCATCAGGAAAGAAGGATTCTCTACCCAAATCATCTGGTCGTGGTGCTGAAGTTGTCGGTGGAAGTGGGAAATCCATCAGGAAGGAGTCATCTGTTGGATTTGCAGGATTTGAGAGACACACAAAGGGGTTTGGATCAAAGATTATGGCAAAGATGGGTTTTGTTGAAGGTATGGGACTTGGTAGAAGTTCACAAGGCATAACCAATCCTTTAGTTGCTGTTA</genome_strand>
        <mrna_strand>GTGACGAGGATTCTGATTTCACAGTCACGGGTATACAAAGTTATAGAAAGGCCGTAAATGCAGCCAAAAACTCTTCAAAGGGTAGTGGTGGACAATCTGGCCCAAGCAATTTGTTTAAAATGCCGATAAATCCACGTGGGCAAAAAGACAGCAGCAAGAAACGAAGGGATCAGAAAACAGTCTCCTATGCTCTTCCTGTCTCCTTTGTTTCAAGTGGTATCATGCGTTCAGAGACAGAAGTTGAGGAGAAATCAATCGAAACAACCCAGACAACCACCATTGTCCATGAAACAAAGGTTGTGACCAACTCAGTCGAATACGGTGCATTCGAGATGCACACTACAGGTATTGGCTCAAAACTCATGGCAAAAATGGGTTATCAAGAAGGCAGAGGCTTAGGGAAAGATGGACAGGGTATTTCTGAGCCCATCGAAGCTCGCCAACGACCAAAAGCTCTTGGATTGGGAGCTGAAATCCCAGAAACAAGTATTAGATCATCAGGAAAGAAGGATTCTCTACCCAAATCATCTGGTCGTGGTGCTGAAGTTGTCGGTGGAAGTGGGAAATCCATCAGGAAGGAGTCATCTGTTGGATTTGCAGGATTTGAGAGACACACAAAGGGGTTTGGATCAAAGATTATGGCAAAGATGGGTTTTGTTGAAGGTATGGGACTTGGTAGAAGTTCACAAGGCATAACCAATCCTTTAGTTGCTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241606" ref_strand="+" ref_description="SGN-E241606 [cLED-36-M5]">
      <seq>tgacgaggattctgatttcacagtcacgggtatacaaagttatagaaaggatgtaaatgcagccaaaaactcttcaaagggtagtggtggacaatctggcccaagcaatttgtttaaaatgccgataaatccacgtgggcaaaaagacagcagcaagaaacgaagggatcagaaaacagtctcctatgctcttcctgtctcctttgtttcaagtggtatcatgcgttcagagacagaagttgaggagaaatcaatcgaaacaacccagacaaccaccattgtccatgaaacaaaggttgtgaccaactcagtcgaatacggtgcattcgagatgcacactacaggtattggctcaaaactcatggcaaaaatgggttatcaagaaggcagaggcttagggaaagatggacagggtatttctgagcccatcgaagctcgccaacgaccaaaagctcttggattgggagctgaaatcccagaaacaagtattagatcatcaggaaagaaggattctctacccaaatcatctggtcgtggtgctgaagttgtcggtggaagtgggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="82863" stop="81699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82563" g_stop="81999" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E241606" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82563" e_stop="81999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGAGGATTCTGATTTCACAGTCACGGGTATACAAAGTTATAGAAAGGATGTAAATGCAGCCAAAAACTCTTCAAAGGGTAGTGGTGGACAATCTGGCCCAAGCAATTTGTTTAAAATGCCGATAAATCCACGTGGGCAAAAAGACAGCAGCAAGAAACGAAGGGATCAGAAAACAGTCTCCTATGCTCTTCCTGTCTCCTTTGTTTCAAGTGGTATCATGCGTTCAGAGACAGAAGTTGAGGAGAAATCAATCGAAACAACCCAGACAACCACCATTGTCCATGAAACAAAGGTTGTGACCAACTCAGTCGAATACGGTGCATTCGAGATGCACACTACAGGTATTGGCTCAAAACTCATGGCAAAAATGGGTTATCAAGAAGGCAGAGGCTTAGGGAAAGATGGACAGGGTATTTCTGAGCCCATCGAAGCTCGCCAACGACCAAAAGCTCTTGGATTGGGAGCTGAAATCCCAGAAACAAGTATTAGATCATCAGGAAAGAAGGATTCTCTACCCAAATCATCTGGTCGTGGTGCTGAAGTTGTCGGTGGAAGTGGGAAA</genome_strand>
        <mrna_strand>TGACGAGGATTCTGATTTCACAGTCACGGGTATACAAAGTTATAGAAAGGATGTAAATGCAGCCAAAAACTCTTCAAAGGGTAGTGGTGGACAATCTGGCCCAAGCAATTTGTTTAAAATGCCGATAAATCCACGTGGGCAAAAAGACAGCAGCAAGAAACGAAGGGATCAGAAAACAGTCTCCTATGCTCTTCCTGTCTCCTTTGTTTCAAGTGGTATCATGCGTTCAGAGACAGAAGTTGAGGAGAAATCAATCGAAACAACCCAGACAACCACCATTGTCCATGAAACAAAGGTTGTGACCAACTCAGTCGAATACGGTGCATTCGAGATGCACACTACAGGTATTGGCTCAAAACTCATGGCAAAAATGGGTTATCAAGAAGGCAGAGGCTTAGGGAAAGATGGACAGGGTATTTCTGAGCCCATCGAAGCTCGCCAACGACCAAAAGCTCTTGGATTGGGAGCTGAAATCCCAGAAACAAGTATTAGATCATCAGGAAAGAAGGATTCTCTACCCAAATCATCTGGTCGTGGTGCTGAAGTTGTCGGTGGAAGTGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231761" ref_strand="+" ref_description="SGN-E231761 [cLED-4-J20]">
      <seq>tgacgaggattctgatttcacagtcacgggtatacaaagttatagaaaggatgtaaatgcagccaaaaactcttcaaagggtagtggtggacaatctggcccaagcaatttgtttaaaatgccgataaatccacgtgggcaaaaagacagcagcaagaaacgaagggatcagaaaacagtctcctatgctcttcctgtctcctttgtttcaagtggtatcatgcgttcagagacagaagttgaggagaaatcaatcgaaacaacccagacaaccaccattgtccatgaaacaaaggttgtgaccaactcagtcgaatacggtgcattcgagatgcacactacaggtattggctcaaaactcatggcaaaaatgggttatcaagaaggcagaggcttagggaaagatggacagggtatttctgagcccatcgaagctcgccaacgaccaaaagctcttggattgggagctgaaatcccagaaacaagtattagatcatcaggaaagaaggattctctacccaaatcatctggtcgtggtgctgaagttgtcggtggaagtggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="82863" stop="81701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82563" g_stop="82001" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E231761" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82563" e_stop="82001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGAGGATTCTGATTTCACAGTCACGGGTATACAAAGTTATAGAAAGGATGTAAATGCAGCCAAAAACTCTTCAAAGGGTAGTGGTGGACAATCTGGCCCAAGCAATTTGTTTAAAATGCCGATAAATCCACGTGGGCAAAAAGACAGCAGCAAGAAACGAAGGGATCAGAAAACAGTCTCCTATGCTCTTCCTGTCTCCTTTGTTTCAAGTGGTATCATGCGTTCAGAGACAGAAGTTGAGGAGAAATCAATCGAAACAACCCAGACAACCACCATTGTCCATGAAACAAAGGTTGTGACCAACTCAGTCGAATACGGTGCATTCGAGATGCACACTACAGGTATTGGCTCAAAACTCATGGCAAAAATGGGTTATCAAGAAGGCAGAGGCTTAGGGAAAGATGGACAGGGTATTTCTGAGCCCATCGAAGCTCGCCAACGACCAAAAGCTCTTGGATTGGGAGCTGAAATCCCAGAAACAAGTATTAGATCATCAGGAAAGAAGGATTCTCTACCCAAATCATCTGGTCGTGGTGCTGAAGTTGTCGGTGGAAGTGGGA</genome_strand>
        <mrna_strand>TGACGAGGATTCTGATTTCACAGTCACGGGTATACAAAGTTATAGAAAGGATGTAAATGCAGCCAAAAACTCTTCAAAGGGTAGTGGTGGACAATCTGGCCCAAGCAATTTGTTTAAAATGCCGATAAATCCACGTGGGCAAAAAGACAGCAGCAAGAAACGAAGGGATCAGAAAACAGTCTCCTATGCTCTTCCTGTCTCCTTTGTTTCAAGTGGTATCATGCGTTCAGAGACAGAAGTTGAGGAGAAATCAATCGAAACAACCCAGACAACCACCATTGTCCATGAAACAAAGGTTGTGACCAACTCAGTCGAATACGGTGCATTCGAGATGCACACTACAGGTATTGGCTCAAAACTCATGGCAAAAATGGGTTATCAAGAAGGCAGAGGCTTAGGGAAAGATGGACAGGGTATTTCTGAGCCCATCGAAGCTCGCCAACGACCAAAAGCTCTTGGATTGGGAGCTGAAATCCCAGAAACAAGTATTAGATCATCAGGAAAGAAGGATTCTCTACCCAAATCATCTGGTCGTGGTGCTGAAGTTGTCGGTGGAAGTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343375" ref_strand="+" ref_description="SGN-E343375 [cTOF-19-C2]">
      <seq>aaacatcgcaaggagatgatggctgtgaagcgtcgagagagaatgctacaccgaggtgttgatcttcagaagataaatttaaaattacaccagatggttttggatggagctgatatgttatctttccaacctatgcattcgcgtgattgttctcaggttcagagattagctgcaatataccgcctgcgaagtggttgtcaaggttctggcaagaagaggtttgtgacagttaccaagacacagcatacggctatgccatcccccagtgataaaattcgtttggagaagttgataggagccggtgacgaggattctgatttcacagtcacgggtatacaaagttatagaaaggatgtaaatgcagccaaaaactcttcaaagggtagtggtggacaatctggcccaagcaatttgtttaaaatgccgataaatccacgtgggcaaaaagacagcagcaagaaacgaagggatcagaaaacagtctcctatgctcttcctgtctcctttgtttcaagtggtatcatgcgttcagagacagaagttgaggagaaatcaatcgaaacaacccagacaaccaccattgtccatgaaacaaaggttgtgaccaactcagtcgaatacggtgcattcgagatgcacactacaggtattggctcanaactcatggcaaaaatgggttatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="85258" stop="81881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84958" g_stop="84878" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84877" i_stop="83737" i_length="1141">
            <donor d_prob="0.386" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83736" g_stop="83662" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="156" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83661" i_stop="83171" i_length="491">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83170" g_stop="83109" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="218" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83108" i_stop="82782" i_length="327">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82781" g_stop="82712" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="288" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82711" i_stop="82578" i_length="134">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82577" g_stop="82181" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="685" r_length="397" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E343375" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84958" e_stop="84878"/>
          <exon e_start="83736" e_stop="83662"/>
          <exon e_start="83170" e_stop="83109"/>
          <exon e_start="82781" e_stop="82712"/>
          <exon e_start="82577" e_stop="82181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCGCAAGGAGATGATGGCTGTGAAGCGTCGAGAGAGAATGCTACACCGAGGTGTTGATCTTCAGAAGATAAATTTAGTAAGAGCTTGAAATTGTTTTCCTTGTTAGGAGTCTCGAGTCTTTTGTCTTTCGAACCAGCTTGATCGTTTGAAACATGCCTATGATCCTGTGTAGATCCGTCTTTTTGACATCAGATGGTAACTTTTCCTTGTTTGATATTTTTCTGTTCCACTAAATTTATTTAATAACTTTGTCAGTGAGAAACTTAGTAGTATGAAAAGTTATCTCAACTATGTCCTTTTGGTGAAAATAAGAATTGAGCATTTCAGTTTCGAGCTTGCTTGTATGTTTAGGCTGACATATTTGTCTTGAAGTCTTTATATTTGTCCCGTTGTATGTTGATCTTGTTTGTAAAGTTAATCTGTAAGTTGGAGCCAGGTCATAAGCGAATGCGGATGTACTGCAGATAGTTGTATAACCAAATTTTACTGCAAATACTTGTTGGTAAGGGTTGTAGATTTTTAGGAGGTTCCTAATCGAATTTAGACAGTTCCCCTTGTTAGATTTTGGATCAGATTTTTTTTTTTGAAATGAAATAGAAAACAGGGTTCTCCTGCCTAAACAATGAAGTATCAGTAATGTGGAGTTCTTGGTCTTTAAACATCACCTATCTACTGACATGAAACATAACTTCATTTGATTGATGGTGTCTCTTCTTTTTCCTCTTTGTATTTATGGTTTTGTTCATCTCAGCTGGTTAAGTAGTTCGGTGAGCAGATCATAATGGTGTAAACTGAAGCTGCGATTGGATGTTCATTGAGTTACTTTATATCCCTTTTCATATTATTTCCTTTTGTAGCTGAGTCACTGTGCTAGTTTTTCTGGAACAAAGACGAGCCACAGTTGCTGCCTTTAAGTTGGCTAGTTTTGTAGGTGACTTTTTATAGATGCTCTATTTAGCTCCTAGAAACTGATTTTTGCCCTAAAATCGGAGACCTCTGTATATCTTGACAGTGTGTACAGGGTGGGGAACCCCTTTGTTGCCTTGTCATTGAATCATCACCTTCCGAGTACCATAGTCCTTACTAAAAATACGGTGCATACTTTATCAAAGTGCATCAAAATCAAAGAAACCAAATTGATGTTGTGTAGATCTATTCAAAAGCTATAAATTTTTTTTTCCTTTTTACTGAAATTTCCTTTCACTCTTAAAATGTAGAAATTACACCAGATGGTTTTGGATGGAGCTGATATGTTATCTTTCCAACCTATGCATTCGCGTGATTGTTCTCAGGTATTGTGTTTTGTCATAGCTATGTTCAGGAAATAAAGTCCTTTTACTTATCTACGTGCAATCCAGTAACTTCTCATCTTTATTTTTAACGTACCTTGGGAACTACTTCCATTAAGTGCCAATGTGATACTACTGCTGTTTTACCCAAGTAGGTATTATCTCATGTATAGTGGAAAATAATTAAGAAAAAAGGCGTATTTACAAAGAAAACTTCTTCATATGATAACCTGGATTCTTCTGGTGCTGCTTCTTTTTTTTGAAAGCTGTAAAAAGTTGCTCTTTTACTCATTTGACCTTATTTTGCCCTTTCTTATGAAAAAAGGAACATTGCTTTAATAATTAAGGCTCAAGTTCACCATTTGTAGTCATGATTACTGACTTTATGACTAGCTTGCAATAGGAAGGAATTATTTGTCATTCAGTCGAGTGTCTTCTATGAGTACAATGACTATAAATCACTTGTTTTGACATTCAGTGCTGAATATGCACAGGTTCAGAGATTAGCTGCAATATACCGCCTGCGAAGTGGTTGTCAAGGTTCTGGCAAGAAGAGGTAGGAACTTTTTCCCTTTTAGTCTTTCAGATGTGAATTTCAGAGATAATCAAGAGGGTGTTTTGTTGGCCTTTAGTTAGTTGTGAAAATTATGGTTATTTTGATAGCTTATTCTACGGGTAGAAGGCATTTTACCTTAAGATGTTAATATTAGTAATGGAAAAGCTTTTTAGAGAAGATTTGTATCGTAAACTGACTTTTGCATCTGCTATATGTGGCTTCTGCATCTCCATTTTCTTTGGACTGCTTTGGACATGTATATTAGATGTAATACTGCTATGGGAAGAAACTTTACTCGTTGAAGTCATCCGTGTTCCTTTTTTCCAGGTTTGTGACAGTTACCAAGACACAGCATACGGCTATGCCATCCCCCAGTGATAAAATTCGTTTGGAGAAGGTTATGTTGCTTGAAACCTCCAGTCCGTCGAAGAGTTCAATTTTTTGGTTTACATAATATATACCTTAAATAAACATTCTGTAAAGATGCATGTTTCTGTCTGACATGAAGATTTCCATTTTTTGACCATTCAGTTGATAGGAGCCGGTGACGAGGATTCTGATTTCACAGTCACGGGTATACAAAGTTATAGAAAGGATGTAAATGCAGCCAAAAACTCTTCAAAGGGTAGTGGTGGACAATCTGGCCCAAGCAATTTGTTTAAAATGCCGATAAATCCACGTGGGCAAAAAGACAGCAGCAAGAAACGAAGGGATCAGAAAACAGTCTCCTATGCTCTTCCTGTCTCCTTTGTTTCAAGTGGTATCATGCGTTCAGAGACAGAAGTTGAGGAGAAATCAATCGAAACAACCCAGACAACCACCATTGTCCATGAAACAAAGGTTGTGACCAACTCAGTCGAATACGGTGCATTCGAGATGCACACTACAGGTATTGGCTCAAAACTCATGGCAAAAATGGGTTATCAAG</genome_strand>
        <mrna_strand>AAACATCGCAAGGAGATGATGGCTGTGAAGCGTCGAGAGAGAATGCTACACCGAGGTGTTGATCTTCAGAAGATAAATTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTACACCAGATGGTTTTGGATGGAGCTGATATGTTATCTTTCCAACCTATGCATTCGCGTGATTGTTCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGAGATTAGCTGCAATATACCGCCTGCGAAGTGGTTGTCAAGGTTCTGGCAAGAAGAG.......................................................................................................................................................................................................................................................................................................................................GTTTGTGACAGTTACCAAGACACAGCATACGGCTATGCCATCCCCCAGTGATAAAATTCGTTTGGAGAAG......................................................................................................................................TTGATAGGAGCCGGTGACGAGGATTCTGATTTCACAGTCACGGGTATACAAAGTTATAGAAAGGATGTAAATGCAGCCAAAAACTCTTCAAAGGGTAGTGGTGGACAATCTGGCCCAAGCAATTTGTTTAAAATGCCGATAAATCCACGTGGGCAAAAAGACAGCAGCAAGAAACGAAGGGATCAGAAAACAGTCTCCTATGCTCTTCCTGTCTCCTTTGTTTCAAGTGGTATCATGCGTTCAGAGACAGAAGTTGAGGAGAAATCAATCGAAACAACCCAGACAACCACCATTGTCCATGAAACAAAGGTTGTGACCAACTCAGTCGAATACGGTGCATTCGAGATGCACACTACAGGTATTGGCTCANAACTCATGGCAAAAATGGGTTATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206766" ref_strand="+" ref_description="SGN-E206766 [cLEC-31-B6]">
      <seq>aatataccgcctgcgaagtggttgtcaaggttctggcaagaagaggtttgtgacagttaccaagacacagcatacggctatgccatcccccagtgataaaattcgtttggagaagttgataggagccggtgaccaggattctgatttcacagtcacgggtatacaaagttatagaaaggatgtaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="83453" stop="82205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83153" g_stop="83109" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83108" i_stop="82782" i_length="327">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82781" g_stop="82712" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="115" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82711" i_stop="82578" i_length="134">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82577" g_stop="82505" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="188" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E206766" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83153" e_stop="83109"/>
          <exon e_start="82781" e_stop="82712"/>
          <exon e_start="82577" e_stop="82505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATACCGCCTGCGAAGTGGTTGTCAAGGTTCTGGCAAGAAGAGGTAGGAACTTTTTCCCTTTTAGTCTTTCAGATGTGAATTTCAGAGATAATCAAGAGGGTGTTTTGTTGGCCTTTAGTTAGTTGTGAAAATTATGGTTATTTTGATAGCTTATTCTACGGGTAGAAGGCATTTTACCTTAAGATGTTAATATTAGTAATGGAAAAGCTTTTTAGAGAAGATTTGTATCGTAAACTGACTTTTGCATCTGCTATATGTGGCTTCTGCATCTCCATTTTCTTTGGACTGCTTTGGACATGTATATTAGATGTAATACTGCTATGGGAAGAAACTTTACTCGTTGAAGTCATCCGTGTTCCTTTTTTCCAGGTTTGTGACAGTTACCAAGACACAGCATACGGCTATGCCATCCCCCAGTGATAAAATTCGTTTGGAGAAGGTTATGTTGCTTGAAACCTCCAGTCCGTCGAAGAGTTCAATTTTTTGGTTTACATAATATATACCTTAAATAAACATTCTGTAAAGATGCATGTTTCTGTCTGACATGAAGATTTCCATTTTTTGACCATTCAGTTGATAGGAGCCGGTGACGAGGATTCTGATTTCACAGTCACGGGTATACAAAGTTATAGAAAGGATGTAAATG</genome_strand>
        <mrna_strand>AATATACCGCCTGCGAAGTGGTTGTCAAGGTTCTGGCAAGAAGAG.......................................................................................................................................................................................................................................................................................................................................GTTTGTGACAGTTACCAAGACACAGCATACGGCTATGCCATCCCCCAGTGATAAAATTCGTTTGGAGAAG......................................................................................................................................TTGATAGGAGCCGGTGACCAGGATTCTGATTTCACAGTCACGGGTATACAAAGTTATAGAAAGGATGTAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445808" ref_strand="+" ref_description="SGN-E445808 [cSTA-18-L21]">
      <seq>gaatgaagaagcctaaaaaagagaggaagtcccgaggaggtcagaaatctactcctgccaagcaagcccggggatctgatttggatggccttatgtttgtaaaggacccgagaacagtttcagggaaaaagaaacatgctgctaaatttcctcagtcatggccgtttgaatctcaaaagagtaaaaatttcgggaggtttccaggtgctaagaagaaacatcgcaaggagatgatggctttgaagcgtcgagagagaatgctccaccaaggtgttgatcttcagaagataaatttaaaactgcaccagatggttttggatggagctgatatgttttctttccaacctatgcattcacgtgattgttctcaggttcagagattagctgcaatataccgtctgcgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="85724" stop="82836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85424" g_stop="85221" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85220" i_stop="84970" i_length="251">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84969" g_stop="84878" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="296" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84877" i_stop="83737" i_length="1141">
            <donor d_prob="0.386" d_score="0.96"/>
            <acceptor a_prob="0.956" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83736" g_stop="83662" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="371" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83661" i_stop="83171" i_length="491">
            <donor d_prob="0.942" d_score="0.96"/>
            <acceptor a_prob="0.955" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83170" g_stop="83136" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="406" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E445808" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85424" e_stop="85221"/>
          <exon e_start="84969" e_stop="84878"/>
          <exon e_start="83736" e_stop="83662"/>
          <exon e_start="83170" e_stop="83136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGAAGAAGCCTAAAAAAGAGAGAAAGTTCCGAGGAGGTCAGAAATCTCCTTCTGCCAAGCAAGCCCAGGGATCTGATTTGGATGGCCTTGTTTTTGTAAAGGACCCGAGAACAGTTTCAGGGAAAAAGAAACATGCTGCTAAATTTCCTCAGTCATGGCCGTTTGAGTCTCAAAAGAGTAAAAATTTCGGGAGGTTTCCAGGTAAAGATATTTGCCCTATAGTGAGTTGCGACAATATGCTTTGTCTTTATTTAAATTTGCTTATGGTTAGCCATTAAATTTCAAGTATATATAACTTATTACTCTCTTGGATTGAAAGAGGATAAAGTTCCATTGGATTTCTCTCTCTGTGCTTTTGCTTTCATTGTTTTCTCTGCTGACCTTTTCTTTTTGTTTGTGTATTGCGATGTGCCTTCAACTCCACTGTATATACTCCTAGCTTATGTTTTCAGGTGCTAAGAAGAAACATCGCAAGGAGATGATGGCTGTGAAGCGTCGAGAGAGAATGCTACACCGAGGTGTTGATCTTCAGAAGATAAATTTAGTAAGAGCTTGAAATTGTTTTCCTTGTTAGGAGTCTCGAGTCTTTTGTCTTTCGAACCAGCTTGATCGTTTGAAACATGCCTATGATCCTGTGTAGATCCGTCTTTTTGACATCAGATGGTAACTTTTCCTTGTTTGATATTTTTCTGTTCCACTAAATTTATTTAATAACTTTGTCAGTGAGAAACTTAGTAGTATGAAAAGTTATCTCAACTATGTCCTTTTGGTGAAAATAAGAATTGAGCATTTCAGTTTCGAGCTTGCTTGTATGTTTAGGCTGACATATTTGTCTTGAAGTCTTTATATTTGTCCCGTTGTATGTTGATCTTGTTTGTAAAGTTAATCTGTAAGTTGGAGCCAGGTCATAAGCGAATGCGGATGTACTGCAGATAGTTGTATAACCAAATTTTACTGCAAATACTTGTTGGTAAGGGTTGTAGATTTTTAGGAGGTTCCTAATCGAATTTAGACAGTTCCCCTTGTTAGATTTTGGATCAGATTTTTTTTTTTGAAATGAAATAGAAAACAGGGTTCTCCTGCCTAAACAATGAAGTATCAGTAATGTGGAGTTCTTGGTCTTTAAACATCACCTATCTACTGACATGAAACATAACTTCATTTGATTGATGGTGTCTCTTCTTTTTCCTCTTTGTATTTATGGTTTTGTTCATCTCAGCTGGTTAAGTAGTTCGGTGAGCAGATCATAATGGTGTAAACTGAAGCTGCGATTGGATGTTCATTGAGTTACTTTATATCCCTTTTCATATTATTTCCTTTTGTAGCTGAGTCACTGTGCTAGTTTTTCTGGAACAAAGACGAGCCACAGTTGCTGCCTTTAAGTTGGCTAGTTTTGTAGGTGACTTTTTATAGATGCTCTATTTAGCTCCTAGAAACTGATTTTTGCCCTAAAATCGGAGACCTCTGTATATCTTGACAGTGTGTACAGGGTGGGGAACCCCTTTGTTGCCTTGTCATTGAATCATCACCTTCCGAGTACCATAGTCCTTACTAAAAATACGGTGCATACTTTATCAAAGTGCATCAAAATCAAAGAAACCAAATTGATGTTGTGTAGATCTATTCAAAAGCTATAAATTTTTTTTTCCTTTTTACTGAAATTTCCTTTCACTCTTAAAATGTAGAAATTACACCAGATGGTTTTGGATGGAGCTGATATGTTATCTTTCCAACCTATGCATTCGCGTGATTGTTCTCAGGTATTGTGTTTTGTCATAGCTATGTTCAGGAAATAAAGTCCTTTTACTTATCTACGTGCAATCCAGTAACTTCTCATCTTTATTTTTAACGTACCTTGGGAACTACTTCCATTAAGTGCCAATGTGATACTACTGCTGTTTTACCCAAGTAGGTATTATCTCATGTATAGTGGAAAATAATTAAGAAAAAAGGCGTATTTACAAAGAAAACTTCTTCATATGATAACCTGGATTCTTCTGGTGCTGCTTCTTTTTTTTGAAAGCTGTAAAAAGTTGCTCTTTTACTCATTTGACCTTATTTTGCCCTTTCTTATGAAAAAAGGAACATTGCTTTAATAATTAAGGCTCAAGTTCACCATTTGTAGTCATGATTACTGACTTTATGACTAGCTTGCAATAGGAAGGAATTATTTGTCATTCAGTCGAGTGTCTTCTATGAGTACAATGACTATAAATCACTTGTTTTGACATTCAGTGCTGAATATGCACAGGTTCAGAGATTAGCTGCAATATACCGCCTGCGAAG</genome_strand>
        <mrna_strand>GAATGAAGAAGCCTAAAAAAGAGAGGAAGTCCCGAGGAGGTCAGAAATCTACTCCTGCCAAGCAAGCCCGGGGATCTGATTTGGATGGCCTTATGTTTGTAAAGGACCCGAGAACAGTTTCAGGGAAAAAGAAACATGCTGCTAAATTTCCTCAGTCATGGCCGTTTGAATCTCAAAAGAGTAAAAATTTCGGGAGGTTTCCAG...........................................................................................................................................................................................................................................................GTGCTAAGAAGAAACATCGCAAGGAGATGATGGCTTTGAAGCGTCGAGAGAGAATGCTCCACCAAGGTGTTGATCTTCAGAAGATAAATTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGCACCAGATGGTTTTGGATGGAGCTGATATGTTTTCTTTCCAACCTATGCATTCACGTGATTGTTCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGAGATTAGCTGCAATATACCGTCTGCGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259354" ref_strand="+" ref_description="SGN-E259354 [cLEG-43-D11]">
      <seq>gaaaatgatgggtcatctgatagtgattcagatgttgatgaagaggttgctgcagattattatgaaggaactggtgggctgtgcaaagtaattgatgttagacagttggttggacaagttcctagtagctgctctgatgatagcttagacgaaaccgtagagaagttgggtgggattcatcttcaggaagcctctagggtgtatggaatgaagaagcctaaaaaagagagaaagttccgaggaggtcagaaatctccttctgccaagcaagcccagggatctgatttggatggccttgtttttgtaaaggacccgagaacagtttcagggaaaaagaaacatgctgctaaatttcctcagtcatggccgtttgagtctcaaaagagtaaaaatttcgggaggtttccaggtgctaagaagaaacatcgcaaggagatgatggctgtgaagcgtcgagagagaatgctacaccgaggtgttgatcttcagaagataaatttaaaattacaccagatggttttggatggagctgatatgttatctttccaacctatgcattcgcgtgattgttctcaggttcagagattagctgcaatataccgcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="85929" stop="82840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85629" g_stop="85221" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85220" i_stop="84970" i_length="251">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84969" g_stop="84878" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="501" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84877" i_stop="83737" i_length="1141">
            <donor d_prob="0.386" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83736" g_stop="83662" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="576" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83661" i_stop="83171" i_length="491">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83170" g_stop="83140" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="607" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E259354" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85629" e_stop="85221"/>
          <exon e_start="84969" e_stop="84878"/>
          <exon e_start="83736" e_stop="83662"/>
          <exon e_start="83170" e_stop="83140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGATGGGTCATCTGATAGTGATTCAGATGTTGATGAAGAGGTTGCTGCAGATTATTATGAAGGAACTGGTGGGCTGTGCAAAGTAATTGATGTTAGACAGTTGGTTGGACAAGTTCCTAGTAGCTGCTCTGATGATAGCTTAGACGAAACCGTAGAGAAGTTGGGTGGGATTCATCTTCAGGAAGCCTCTAGGGTGTATGGAATGAAGAAGCCTAAAAAAGAGAGAAAGTTCCGAGGAGGTCAGAAATCTCCTTCTGCCAAGCAAGCCCAGGGATCTGATTTGGATGGCCTTGTTTTTGTAAAGGACCCGAGAACAGTTTCAGGGAAAAAGAAACATGCTGCTAAATTTCCTCAGTCATGGCCGTTTGAGTCTCAAAAGAGTAAAAATTTCGGGAGGTTTCCAGGTAAAGATATTTGCCCTATAGTGAGTTGCGACAATATGCTTTGTCTTTATTTAAATTTGCTTATGGTTAGCCATTAAATTTCAAGTATATATAACTTATTACTCTCTTGGATTGAAAGAGGATAAAGTTCCATTGGATTTCTCTCTCTGTGCTTTTGCTTTCATTGTTTTCTCTGCTGACCTTTTCTTTTTGTTTGTGTATTGCGATGTGCCTTCAACTCCACTGTATATACTCCTAGCTTATGTTTTCAGGTGCTAAGAAGAAACATCGCAAGGAGATGATGGCTGTGAAGCGTCGAGAGAGAATGCTACACCGAGGTGTTGATCTTCAGAAGATAAATTTAGTAAGAGCTTGAAATTGTTTTCCTTGTTAGGAGTCTCGAGTCTTTTGTCTTTCGAACCAGCTTGATCGTTTGAAACATGCCTATGATCCTGTGTAGATCCGTCTTTTTGACATCAGATGGTAACTTTTCCTTGTTTGATATTTTTCTGTTCCACTAAATTTATTTAATAACTTTGTCAGTGAGAAACTTAGTAGTATGAAAAGTTATCTCAACTATGTCCTTTTGGTGAAAATAAGAATTGAGCATTTCAGTTTCGAGCTTGCTTGTATGTTTAGGCTGACATATTTGTCTTGAAGTCTTTATATTTGTCCCGTTGTATGTTGATCTTGTTTGTAAAGTTAATCTGTAAGTTGGAGCCAGGTCATAAGCGAATGCGGATGTACTGCAGATAGTTGTATAACCAAATTTTACTGCAAATACTTGTTGGTAAGGGTTGTAGATTTTTAGGAGGTTCCTAATCGAATTTAGACAGTTCCCCTTGTTAGATTTTGGATCAGATTTTTTTTTTTGAAATGAAATAGAAAACAGGGTTCTCCTGCCTAAACAATGAAGTATCAGTAATGTGGAGTTCTTGGTCTTTAAACATCACCTATCTACTGACATGAAACATAACTTCATTTGATTGATGGTGTCTCTTCTTTTTCCTCTTTGTATTTATGGTTTTGTTCATCTCAGCTGGTTAAGTAGTTCGGTGAGCAGATCATAATGGTGTAAACTGAAGCTGCGATTGGATGTTCATTGAGTTACTTTATATCCCTTTTCATATTATTTCCTTTTGTAGCTGAGTCACTGTGCTAGTTTTTCTGGAACAAAGACGAGCCACAGTTGCTGCCTTTAAGTTGGCTAGTTTTGTAGGTGACTTTTTATAGATGCTCTATTTAGCTCCTAGAAACTGATTTTTGCCCTAAAATCGGAGACCTCTGTATATCTTGACAGTGTGTACAGGGTGGGGAACCCCTTTGTTGCCTTGTCATTGAATCATCACCTTCCGAGTACCATAGTCCTTACTAAAAATACGGTGCATACTTTATCAAAGTGCATCAAAATCAAAGAAACCAAATTGATGTTGTGTAGATCTATTCAAAAGCTATAAATTTTTTTTTCCTTTTTACTGAAATTTCCTTTCACTCTTAAAATGTAGAAATTACACCAGATGGTTTTGGATGGAGCTGATATGTTATCTTTCCAACCTATGCATTCGCGTGATTGTTCTCAGGTATTGTGTTTTGTCATAGCTATGTTCAGGAAATAAAGTCCTTTTACTTATCTACGTGCAATCCAGTAACTTCTCATCTTTATTTTTAACGTACCTTGGGAACTACTTCCATTAAGTGCCAATGTGATACTACTGCTGTTTTACCCAAGTAGGTATTATCTCATGTATAGTGGAAAATAATTAAGAAAAAAGGCGTATTTACAAAGAAAACTTCTTCATATGATAACCTGGATTCTTCTGGTGCTGCTTCTTTTTTTTGAAAGCTGTAAAAAGTTGCTCTTTTACTCATTTGACCTTATTTTGCCCTTTCTTATGAAAAAAGGAACATTGCTTTAATAATTAAGGCTCAAGTTCACCATTTGTAGTCATGATTACTGACTTTATGACTAGCTTGCAATAGGAAGGAATTATTTGTCATTCAGTCGAGTGTCTTCTATGAGTACAATGACTATAAATCACTTGTTTTGACATTCAGTGCTGAATATGCACAGGTTCAGAGATTAGCTGCAATATACCGCCTGC</genome_strand>
        <mrna_strand>GAAAATGATGGGTCATCTGATAGTGATTCAGATGTTGATGAAGAGGTTGCTGCAGATTATTATGAAGGAACTGGTGGGCTGTGCAAAGTAATTGATGTTAGACAGTTGGTTGGACAAGTTCCTAGTAGCTGCTCTGATGATAGCTTAGACGAAACCGTAGAGAAGTTGGGTGGGATTCATCTTCAGGAAGCCTCTAGGGTGTATGGAATGAAGAAGCCTAAAAAAGAGAGAAAGTTCCGAGGAGGTCAGAAATCTCCTTCTGCCAAGCAAGCCCAGGGATCTGATTTGGATGGCCTTGTTTTTGTAAAGGACCCGAGAACAGTTTCAGGGAAAAAGAAACATGCTGCTAAATTTCCTCAGTCATGGCCGTTTGAGTCTCAAAAGAGTAAAAATTTCGGGAGGTTTCCAG...........................................................................................................................................................................................................................................................GTGCTAAGAAGAAACATCGCAAGGAGATGATGGCTGTGAAGCGTCGAGAGAGAATGCTACACCGAGGTGTTGATCTTCAGAAGATAAATTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTACACCAGATGGTTTTGGATGGAGCTGATATGTTATCTTTCCAACCTATGCATTCGCGTGATTGTTCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGAGATTAGCTGCAATATACCGCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258261" ref_strand="+" ref_description="SGN-E258261 [cLEG-49-E9]">
      <seq>gaaaatgatgggtcatctgatagtgattcagatgttgatgaagaggttgctgcagattattatgaaggaactggtgggctgtgcaaagtaattgatgttagacagttggttggacaagttcctagtagctgctctgatgatagcttagacgaaaccgtagagaagttgggtgggattcatcttcaggaagcctctagggtgtatggaatgaagaagcctaaaaaagagagaaagttccgaggaggtcagaaatctccttctgccaagcaagcccagggatctgatttggatggccttgtttttgtaaaggacccgagaacagtttcagggaaaaagaaacatgctgctaaatttcctcagtcatggccgtttgagtctcaaaagagtaaaaatttcgggaggtttccaggtgctaagaagaaacatcgcaaggagatgatggctgtgaagcgtcgagagagaatgctacaccgaggtgttgatcttcagaagataatttaaaatacaccagatggttttggatggagctgatatgttatctttccaacctatgcattcgcgtgattgttctcaggttcagagattagctgcaatataccgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="85929" stop="82841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85629" g_stop="85221" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85220" i_stop="84970" i_length="251">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84969" g_stop="84878" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="500" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84877" i_stop="83737" i_length="1141">
            <donor d_prob="0.386" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83736" g_stop="83662" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="574" r_length="74" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83661" i_stop="83171" i_length="491">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83170" g_stop="83141" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="604" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E258261" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85629" e_stop="85221"/>
          <exon e_start="84969" e_stop="84878"/>
          <exon e_start="83736" e_stop="83662"/>
          <exon e_start="83170" e_stop="83141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGATGGGTCATCTGATAGTGATTCAGATGTTGATGAAGAGGTTGCTGCAGATTATTATGAAGGAACTGGTGGGCTGTGCAAAGTAATTGATGTTAGACAGTTGGTTGGACAAGTTCCTAGTAGCTGCTCTGATGATAGCTTAGACGAAACCGTAGAGAAGTTGGGTGGGATTCATCTTCAGGAAGCCTCTAGGGTGTATGGAATGAAGAAGCCTAAAAAAGAGAGAAAGTTCCGAGGAGGTCAGAAATCTCCTTCTGCCAAGCAAGCCCAGGGATCTGATTTGGATGGCCTTGTTTTTGTAAAGGACCCGAGAACAGTTTCAGGGAAAAAGAAACATGCTGCTAAATTTCCTCAGTCATGGCCGTTTGAGTCTCAAAAGAGTAAAAATTTCGGGAGGTTTCCAGGTAAAGATATTTGCCCTATAGTGAGTTGCGACAATATGCTTTGTCTTTATTTAAATTTGCTTATGGTTAGCCATTAAATTTCAAGTATATATAACTTATTACTCTCTTGGATTGAAAGAGGATAAAGTTCCATTGGATTTCTCTCTCTGTGCTTTTGCTTTCATTGTTTTCTCTGCTGACCTTTTCTTTTTGTTTGTGTATTGCGATGTGCCTTCAACTCCACTGTATATACTCCTAGCTTATGTTTTCAGGTGCTAAGAAGAAACATCGCAAGGAGATGATGGCTGTGAAGCGTCGAGAGAGAATGCTACACCGAGGTGTTGATCTTCAGAAGATAAATTTAGTAAGAGCTTGAAATTGTTTTCCTTGTTAGGAGTCTCGAGTCTTTTGTCTTTCGAACCAGCTTGATCGTTTGAAACATGCCTATGATCCTGTGTAGATCCGTCTTTTTGACATCAGATGGTAACTTTTCCTTGTTTGATATTTTTCTGTTCCACTAAATTTATTTAATAACTTTGTCAGTGAGAAACTTAGTAGTATGAAAAGTTATCTCAACTATGTCCTTTTGGTGAAAATAAGAATTGAGCATTTCAGTTTCGAGCTTGCTTGTATGTTTAGGCTGACATATTTGTCTTGAAGTCTTTATATTTGTCCCGTTGTATGTTGATCTTGTTTGTAAAGTTAATCTGTAAGTTGGAGCCAGGTCATAAGCGAATGCGGATGTACTGCAGATAGTTGTATAACCAAATTTTACTGCAAATACTTGTTGGTAAGGGTTGTAGATTTTTAGGAGGTTCCTAATCGAATTTAGACAGTTCCCCTTGTTAGATTTTGGATCAGATTTTTTTTTTTGAAATGAAATAGAAAACAGGGTTCTCCTGCCTAAACAATGAAGTATCAGTAATGTGGAGTTCTTGGTCTTTAAACATCACCTATCTACTGACATGAAACATAACTTCATTTGATTGATGGTGTCTCTTCTTTTTCCTCTTTGTATTTATGGTTTTGTTCATCTCAGCTGGTTAAGTAGTTCGGTGAGCAGATCATAATGGTGTAAACTGAAGCTGCGATTGGATGTTCATTGAGTTACTTTATATCCCTTTTCATATTATTTCCTTTTGTAGCTGAGTCACTGTGCTAGTTTTTCTGGAACAAAGACGAGCCACAGTTGCTGCCTTTAAGTTGGCTAGTTTTGTAGGTGACTTTTTATAGATGCTCTATTTAGCTCCTAGAAACTGATTTTTGCCCTAAAATCGGAGACCTCTGTATATCTTGACAGTGTGTACAGGGTGGGGAACCCCTTTGTTGCCTTGTCATTGAATCATCACCTTCCGAGTACCATAGTCCTTACTAAAAATACGGTGCATACTTTATCAAAGTGCATCAAAATCAAAGAAACCAAATTGATGTTGTGTAGATCTATTCAAAAGCTATAAATTTTTTTTTCCTTTTTACTGAAATTTCCTTTCACTCTTAAAATGTAGAAATTACACCAGATGGTTTTGGATGGAGCTGATATGTTATCTTTCCAACCTATGCATTCGCGTGATTGTTCTCAGGTATTGTGTTTTGTCATAGCTATGTTCAGGAAATAAAGTCCTTTTACTTATCTACGTGCAATCCAGTAACTTCTCATCTTTATTTTTAACGTACCTTGGGAACTACTTCCATTAAGTGCCAATGTGATACTACTGCTGTTTTACCCAAGTAGGTATTATCTCATGTATAGTGGAAAATAATTAAGAAAAAAGGCGTATTTACAAAGAAAACTTCTTCATATGATAACCTGGATTCTTCTGGTGCTGCTTCTTTTTTTTGAAAGCTGTAAAAAGTTGCTCTTTTACTCATTTGACCTTATTTTGCCCTTTCTTATGAAAAAAGGAACATTGCTTTAATAATTAAGGCTCAAGTTCACCATTTGTAGTCATGATTACTGACTTTATGACTAGCTTGCAATAGGAAGGAATTATTTGTCATTCAGTCGAGTGTCTTCTATGAGTACAATGACTATAAATCACTTGTTTTGACATTCAGTGCTGAATATGCACAGGTTCAGAGATTAGCTGCAATATACCGCCTG</genome_strand>
        <mrna_strand>GAAAATGATGGGTCATCTGATAGTGATTCAGATGTTGATGAAGAGGTTGCTGCAGATTATTATGAAGGAACTGGTGGGCTGTGCAAAGTAATTGATGTTAGACAGTTGGTTGGACAAGTTCCTAGTAGCTGCTCTGATGATAGCTTAGACGAAACCGTAGAGAAGTTGGGTGGGATTCATCTTCAGGAAGCCTCTAGGGTGTATGGAATGAAGAAGCCTAAAAAAGAGAGAAAGTTCCGAGGAGGTCAGAAATCTCCTTCTGCCAAGCAAGCCCAGGGATCTGATTTGGATGGCCTTGTTTTTGTAAAGGACCCGAGAACAGTTTCAGGGAAAAAGAAACATGCTGCTAAATTTCCTCAGTCATGGCCGTTTGAGTCTCAAAAGAGTAAAAATTTCGGGAGGTTTCCAG...........................................................................................................................................................................................................................................................GTGCTAAGAAGAAACATCGCAAGGAGATGATGGCTGTGAAGCGTCGAGAGAGAATGCTACACCGAGGTGTTGATCTTCAGAAGAT-AATTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-TACACCAGATGGTTTTGGATGGAGCTGATATGTTATCTTTCCAACCTATGCATTCGCGTGATTGTTCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGAGATTAGCTGCAATATACCGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270901" ref_strand="+" ref_description="SGN-E270901 [cLEM-6-N3]">
      <seq>ctgtgcaaagtaattgatgttagacagttggttggacaagttcctagtagctgctctgatgatagcttagacgaaaccgtagagaagttgggtgggattcatcttcaggaagcctctaaggtgtatggaatgaagaagcctaaaaaagagagaaagttccgaggaggtcagaaatctccttctgccaagcaagcccagggatctgatttggatggccttgtttttgtaaaggacccgagaacagtttcagggaaaaagaaacatgctgctaaatttcctcagtcatggccgtttgagtctcaaaagagtaaaaatttcgggaggtttccaggtgctaagaagaaacatcgcaaggagatgatggctgtgaagcgtctagagagaatgctacaccgaagtgttgatcttcataagataaatttaaaattacaccacatggttttggatggagctgatatgttatctttccaacctatgcattcgcgtgattgttctcacgttcagagattagctgcaatataccgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="85851" stop="82841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85551" g_stop="85221" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85220" i_stop="84970" i_length="251">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84969" g_stop="84878" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="423" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84877" i_stop="83737" i_length="1141">
            <donor d_prob="0.386" d_score="0.94"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83736" g_stop="83662" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="498" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83661" i_stop="83171" i_length="491">
            <donor d_prob="0.942" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83170" g_stop="83141" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="528" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E270901" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85551" e_stop="85221"/>
          <exon e_start="84969" e_stop="84878"/>
          <exon e_start="83736" e_stop="83662"/>
          <exon e_start="83170" e_stop="83141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGCAAAGTAATTGATGTTAGACAGTTGGTTGGACAAGTTCCTAGTAGCTGCTCTGATGATAGCTTAGACGAAACCGTAGAGAAGTTGGGTGGGATTCATCTTCAGGAAGCCTCTAGGGTGTATGGAATGAAGAAGCCTAAAAAAGAGAGAAAGTTCCGAGGAGGTCAGAAATCTCCTTCTGCCAAGCAAGCCCAGGGATCTGATTTGGATGGCCTTGTTTTTGTAAAGGACCCGAGAACAGTTTCAGGGAAAAAGAAACATGCTGCTAAATTTCCTCAGTCATGGCCGTTTGAGTCTCAAAAGAGTAAAAATTTCGGGAGGTTTCCAGGTAAAGATATTTGCCCTATAGTGAGTTGCGACAATATGCTTTGTCTTTATTTAAATTTGCTTATGGTTAGCCATTAAATTTCAAGTATATATAACTTATTACTCTCTTGGATTGAAAGAGGATAAAGTTCCATTGGATTTCTCTCTCTGTGCTTTTGCTTTCATTGTTTTCTCTGCTGACCTTTTCTTTTTGTTTGTGTATTGCGATGTGCCTTCAACTCCACTGTATATACTCCTAGCTTATGTTTTCAGGTGCTAAGAAGAAACATCGCAAGGAGATGATGGCTGTGAAGCGTCGAGAGAGAATGCTACACCGAGGTGTTGATCTTCAGAAGATAAATTTAGTAAGAGCTTGAAATTGTTTTCCTTGTTAGGAGTCTCGAGTCTTTTGTCTTTCGAACCAGCTTGATCGTTTGAAACATGCCTATGATCCTGTGTAGATCCGTCTTTTTGACATCAGATGGTAACTTTTCCTTGTTTGATATTTTTCTGTTCCACTAAATTTATTTAATAACTTTGTCAGTGAGAAACTTAGTAGTATGAAAAGTTATCTCAACTATGTCCTTTTGGTGAAAATAAGAATTGAGCATTTCAGTTTCGAGCTTGCTTGTATGTTTAGGCTGACATATTTGTCTTGAAGTCTTTATATTTGTCCCGTTGTATGTTGATCTTGTTTGTAAAGTTAATCTGTAAGTTGGAGCCAGGTCATAAGCGAATGCGGATGTACTGCAGATAGTTGTATAACCAAATTTTACTGCAAATACTTGTTGGTAAGGGTTGTAGATTTTTAGGAGGTTCCTAATCGAATTTAGACAGTTCCCCTTGTTAGATTTTGGATCAGATTTTTTTTTTTGAAATGAAATAGAAAACAGGGTTCTCCTGCCTAAACAATGAAGTATCAGTAATGTGGAGTTCTTGGTCTTTAAACATCACCTATCTACTGACATGAAACATAACTTCATTTGATTGATGGTGTCTCTTCTTTTTCCTCTTTGTATTTATGGTTTTGTTCATCTCAGCTGGTTAAGTAGTTCGGTGAGCAGATCATAATGGTGTAAACTGAAGCTGCGATTGGATGTTCATTGAGTTACTTTATATCCCTTTTCATATTATTTCCTTTTGTAGCTGAGTCACTGTGCTAGTTTTTCTGGAACAAAGACGAGCCACAGTTGCTGCCTTTAAGTTGGCTAGTTTTGTAGGTGACTTTTTATAGATGCTCTATTTAGCTCCTAGAAACTGATTTTTGCCCTAAAATCGGAGACCTCTGTATATCTTGACAGTGTGTACAGGGTGGGGAACCCCTTTGTTGCCTTGTCATTGAATCATCACCTTCCGAGTACCATAGTCCTTACTAAAAATACGGTGCATACTTTATCAAAGTGCATCAAAATCAAAGAAACCAAATTGATGTTGTGTAGATCTATTCAAAAGCTATAAATTTTTTTTTCCTTTTTACTGAAATTTCCTTTCACTCTTAAAATGTAGAAATTACACCAGATGGTTTTGGATGGAGCTGATATGTTATCTTTCCAACCTATGCATTCGCGTGATTGTTCTCAGGTATTGTGTTTTGTCATAGCTATGTTCAGGAAATAAAGTCCTTTTACTTATCTACGTGCAATCCAGTAACTTCTCATCTTTATTTTTAACGTACCTTGGGAACTACTTCCATTAAGTGCCAATGTGATACTACTGCTGTTTTACCCAAGTAGGTATTATCTCATGTATAGTGGAAAATAATTAAGAAAAAAGGCGTATTTACAAAGAAAACTTCTTCATATGATAACCTGGATTCTTCTGGTGCTGCTTCTTTTTTTTGAAAGCTGTAAAAAGTTGCTCTTTTACTCATTTGACCTTATTTTGCCCTTTCTTATGAAAAAAGGAACATTGCTTTAATAATTAAGGCTCAAGTTCACCATTTGTAGTCATGATTACTGACTTTATGACTAGCTTGCAATAGGAAGGAATTATTTGTCATTCAGTCGAGTGTCTTCTATGAGTACAATGACTATAAATCACTTGTTTTGACATTCAGTGCTGAATATGCACAGGTTCAGAGATTAGCTGCAATATACCGCCTG</genome_strand>
        <mrna_strand>CTGTGCAAAGTAATTGATGTTAGACAGTTGGTTGGACAAGTTCCTAGTAGCTGCTCTGATGATAGCTTAGACGAAACCGTAGAGAAGTTGGGTGGGATTCATCTTCAGGAAGCCTCTAAGGTGTATGGAATGAAGAAGCCTAAAAAAGAGAGAAAGTTCCGAGGAGGTCAGAAATCTCCTTCTGCCAAGCAAGCCCAGGGATCTGATTTGGATGGCCTTGTTTTTGTAAAGGACCCGAGAACAGTTTCAGGGAAAAAGAAACATGCTGCTAAATTTCCTCAGTCATGGCCGTTTGAGTCTCAAAAGAGTAAAAATTTCGGGAGGTTTCCAG...........................................................................................................................................................................................................................................................GTGCTAAGAAGAAACATCGCAAGGAGATGATGGCTGTGAAGCGTCTAGAGAGAATGCTACACCGAAGTGTTGATCTTCATAAGATAAATTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTACACCACATGGTTTTGGATGGAGCTGATATGTTATCTTTCCAACCTATGCATTCGCGTGATTGTTCTCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGAGATTAGCTGCAATATACCGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737260" ref_strand="+" ref_description="SGN-E737260 [LC09AC04]">
      <seq>ggaacctcaaaatcagggatgtatttatgattgcacaacccctttatctctagatgttggacaaaataaagattctaatgaagttgactatgctggtgactatagtgctggtttctcactggatgagagttcacacagaggattgggattctatgaagaagcagaaataacacatggtggagttggattgtcacccaaggatgagaaggaaaatccttcttttgaacattcattctctgacgaggatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="86404" stop="85555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86104" g_stop="85855" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E737260" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86104" e_stop="85855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACCTCAAAATCAGGGATGTATTTATGATTGCACAACCCCTTTATCTCTAGATGTTGGACAAAATAAAGATTCTAATGAAGTTGACTATGCTGGTGACTATAGTGCTGGTTTCTCACTGGATGAGAGTTCACACAGAGGATTGGGATTCTATGAAGAAGCAGAAATAACACATGGTGGAGTTGGATTGTCACCCAAGGATGAGAAGGAAAATCCTTCTTTTGAACATTCATTCTCTGACGAGGATATG</genome_strand>
        <mrna_strand>GGAACCTCAAAATCAGGGATGTATTTATGATTGCACAACCCCTTTATCTCTAGATGTTGGACAAAATAAAGATTCTAATGAAGTTGACTATGCTGGTGACTATAGTGCTGGTTTCTCACTGGATGAGAGTTCACACAGAGGATTGGGATTCTATGAAGAAGCAGAAATAACACATGGTGGAGTTGGATTGTCACCCAAGGATGAGAAGGAAAATCCTTCTTTTGAACATTCATTCTCTGACGAGGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363886" ref_strand="+" ref_description="SGN-E363886 [cLPT-10-B22]">
      <seq>tctgtttctgccgtacacggcgttttgccagtttacaccgccgagtatgagaagctgaatacaatgggaggaaataacagaaaacgatctaataaacctaaaacccggaagcctaggaacccgtcttattcgggtcggggcttgtttgttgaaggcggagtcttatctgattggggcgatttcaattctcctccttcaagagggagaaatttgaaaggtgaatatggaaatggaaatggtaattcaaggaatcgtaacgcagctgttagcagctcgaagaatgcttcgagttcgaaaactgaattgaagaagagtcgaggaagtgagatccgttatgtatacccatctgcagattcagtgatacgttcagatgcagtatgtagtggaggagtaaaagatgtcaagttggattcggaacatcctattcttttggttgatacaaaggaaactcaaattgttgctttcgtagatgaaggcccaaataaggaacctcaaaatcagggatgtatttatgatagcacaacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="90297" stop="85763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89997" g_stop="89796" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89795" i_stop="89698" i_length="98">
            <donor d_prob="0.929" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89697" g_stop="89540" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="360" r_length="158" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89539" i_stop="86230" i_length="3310">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86229" g_stop="86063" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="527" r_length="167" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E363886" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89997" e_stop="89796"/>
          <exon e_start="89697" e_stop="89540"/>
          <exon e_start="86229" e_stop="86063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCTCCGCCGTTCACGGCGTTTCGCCACTGTACACCGCCGAGTATGAGAAGCTGAATGAAATGGGAGGAAATAACAGAAAACGATCTAATAAACCTAAAACCCGGAAGCCTAGGAACCCGTCTTATTCGGGTCGGGGCTTGTTTGTTGAAGGCGGAGTCTTATCTGATTGGGGCGATTTCAATTCTCCTCCTTCAAGTGGTTTTCTCTGAATCATATATATATATGTATATGTTGTGTGTGTATTTATAGTGATATTGTTTGTTTATTTGTTAATTTATTTGATTTTGGGAATTTAGGGAGAAATTTGAAGGGTGAATATGGAAATGGAAATGGCAATTCAAGGAATCGTAATGCAGCTGTTAGCAGCTCGATGAATGCTTCGAGTTCGAAAACTGAATTGAAGAAGAGTAGAGGAAGTGAGATCCGTTATGTATACCCATCTGCAGATTCAGTGGTATGTTAATGTAAAAGACTGAATTTTGTTTTCAAAGATCAGCATTTTCTAAATGAGTAGGTTAAGAGTATATTAGAGACATTTTTAATTTATTTTATTGTCAAAGATTGAATTTTTATTGTAGAATGTATAATTTAAGATGATCAACATCCTCTTTACCCACACAAAGGAAAAGGAGGCAAGGTTTGCGTACATTCTACCTCCAAAGAATCCACTTGTGGGATTACTTGAGTTAATGTTGTTGTTGGAATATTGAGTAGGAGTGCTTTTATATCTGTGCATTATTATTGTTAAGAGGTTTAAAGGGCGAATCTTTAGGGAAGATATATGTTGTGTTTTGTTTGTAAAGCTAATTGAGGTTCTAAATTAGTTCATAAGGCAGAAACAACTATATACATCTAATGAGGTATAGTTTCTGGAGGTGAAGTGCTGTATTTCAAAGGATTATTTAGTTAATGGGAAAGGGTGAAAACTACCTCCCGAATAATTCGAAATAGAGCACATATACCCGTGGTTTGTTTATGATCTCAAAACTACCGGTCCCGTCCTGTCCTGTCTAACTATTGGATCACATATACCTTCCTTCTAATGGACTGCAATTACTCACTATGTAGTGTCTGACTTGTAAAAGATGTGCCACATGACTGTCTATCTAAGCACACAAATGTGGATTTTCAACGCACTCAGTAAATGCCCCACTTCCTCTACCATTTTGAACCCTAATTTCATTTCTTACTCCATTTCTTAAATAAACATTCTTCCCCCATTTCTCCAAAAAGATTTGTTCTCCACTAAATTTGAAGCGATGTCAGAATATCCTATCAATTCATAATTGTTTTTGCTAAGCTACCACACTGAGAGTGACTTGATATTGCTACTTTCTATTTTGATGTTAAGAGAAACCCGCAGTTGTTGCCCTTTGGGTGCGCACGGGGTAAAACCCTGTTTTTATGCGACGAGCTCGACCCAGAAGGCAAACCCCCTCCCTTGCTTTTGTTGGCACAGGGTTTCGAACTTGAGACCTTCGACATGGAAGTCCCGAGCCCAAGCCAGTGGGCCACCCCAAAGGATATATATTGCTACTTTTGAGGATATGTAAGTCGGCTAATCCTCAAAAGTAGAAATATATATCCTTTGGGGTGGCCCACTTGATAGTTAAATCACACTTTCACCCCAGTAAACTATGCCCGCCACAAAGCTATGTATAATTTAAAGCTAAACATAGACAAGGTTGATAAGGTGATGTGACACCTTTCTATGGCCTCCAATTGGATTTATCTTATTTTTCTCAATTTTTTGACTTCTTTATTTTTCTTCATCAATGTGCTATTTTTAAAAAATAATTCAAAACTAACCTCTTAAAATGATTACTCAATAGTAATAATTATCACTAAAAAATCGTACTCCATAACTCACATTTCTTGATCTCCATAGCTTCTATTTTTTGTTACTAATTGATAACCTTAGTAATATCCATGACTTCCAAACCTTTCACGTGCATAACAAAACTAACACCAACTTAAAAAGAAACTAAACACAAACTATCTACCAATCTCGTGTCCATTTGCTTATTCTAAAAACTTAAAGAAGTGTCATTGGTTTTTGTACAAGTCACAAATTGAAATTTTGGGATCGGTATTCTTCAAATGAATTTTAAAACAATTCTCCTCCCCTATCCTATAAATTTTTCATAGGCTCCAAACTAGAACAAGGGAAGCTTTGGAGTTTGGATAAGCCCTAAGCCGAGATATTTACGTGATTTGCTAGATTCGCCTTTCACTTCAAAAAAAATGTAGTAGATCCCAAGTAACTCAACAATTACCAATACCATGGTCAAGAAGCTGTATGGTGTTCAAAGTATAAACAGGTTGCTACTTGCACGCTTCATTCACAAATTACTTTCCATACTTCCTGTTACATTTTGCTTTAGTAAGGAATCTGTTCGCGTAATCAATGATGAAAATTAATGCAACAGCAATTTTGGTTAGTACATTTAAGGATTCTAGGAGCCTAGTCATTTTGATGAATACGATCTTTCGTAAACTGATTGAAATTCTTTCCTATGCTTGTTAATTCTTATTGGTGATTCTTCTTATCTTGCTTAGTTGCTACAAGCAGGAATTTCGGACTCAGAGAGATTTCCTATAGAGTTTTTTGTTTTATTAGCATTATTTGTATTTTTTAAAAATATTTGTAAGAGAGTAATAATAGTTTTGGTATATTGCAATTTGCTCCTCTTTTTTTTTCCGTTCTGTAATAGAAATTATTGCATTACTATCCTTTTAACTTGAATGTTTGGAGTTTCCATATTAGATTCATGCTAGATTAAAAATTAGTCTTGTATTAAGTTTAGCGTCTTCGGAAATAGCCTCTCTACCTCCACGAGGTAGTGATAAGATTTGCGTACATTCTACTCTACCCAAGCCCCACTTGTGGGATTTCACTTGGTATGTTGTTGTTGACTTGAAATCGGTTATATGTATTTCACTCTAGGGATTTCAAATGTGTATGACGTGTTATAAAAGTTAGAGAGTGGATTCTGATTTTATTTAATTATTGCGTATTTATTTATTTATTTATTCGTTTACGTCTTTTTTAGTTCATATTCTCTTAAAAATCAGCCCAAGAAGAAAAATGATGAACTAAAGAGAGAAAAAGGTTAATCAAGAAAAGGAAGAAGGAAAAGACAACAATTAGTAGAATAATCATACATTTTGATGCGTGAATTAGGAGCCAACGATTTTGGTCCCCCCCTTCCTCCTCTTCATTTTGCTCTTTTTGTTGTTTTTCTTTCAACTAGAAAGAGAAACAACAATAAGAAAGAAAAATCTCGAAATCAAGCAAGGAATAAGAACTCCATCAAGAAAAAATTATGAATGCTGTAAAATTTAATTTCATCCTAAGAATATAGTTTAGAATTTATTACACATGCACAAATAGAGAGCAAATTTTCTTGATTTTTTTTTTCTTTTCTTTACACGTTTAAAGAAGTATGTACTAAATAGACTACAAAATCAACTATATTTAAAATACTAAAAGTGCAGGTAGTGGATTATAAGTTGAAATATAATCTATTTGGTTTGATGCTGAGATTATTTTCTAAAATGTTCGCCAATCAAGATGTTAATGAAAATATTATTTTGTAAATCTAATGAGGTTCGTGCAAAGCGTGGATGAGTTTAATAGCCTGACTATAAAACAAAAAACTTGCACTACAATCTCAATGCTAAGGGCTACTTAAAAAATCTGTTACCTTCTTCAAAAGAATGCAGTAATATGCACCGCTGATGAAATTTTCTGTCATTTCCAGATACGTTCAGATGCAGTATGTAGTGGAGGAGTAAAAGATGTCAAGTTGGATTCGGAACATCCTATTCTTTTGGTTGATACAAAGGAAACTCAAATTATTGCTTTCGTAGATGAAGGCCCAAATAAGGAACCTCAAAATCAGGGATGTATTTATGATTGCACAACCCC</genome_strand>
        <mrna_strand>TCTGTTTCTGCCGTACACGGCGTTTTGCCAGTTTACACCGCCGAGTATGAGAAGCTGAATACAATGGGAGGAAATAACAGAAAACGATCTAATAAACCTAAAACCCGGAAGCCTAGGAACCCGTCTTATTCGGGTCGGGGCTTGTTTGTTGAAGGCGGAGTCTTATCTGATTGGGGCGATTTCAATTCTCCTCCTTCAAGAG..................................................................................................GGAGAAATTTGAAAGGTGAATATGGAAATGGAAATGGTAATTCAAGGAATCGTAACGCAGCTGTTAGCAGCTCGAAGAATGCTTCGAGTTCGAAAACTGAATTGAAGAAGAGTCGAGGAAGTGAGATCCGTTATGTATACCCATCTGCAGATTCAGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGTTCAGATGCAGTATGTAGTGGAGGAGTAAAAGATGTCAAGTTGGATTCGGAACATCCTATTCTTTTGGTTGATACAAAGGAAACTCAAATTGTTGCTTTCGTAGATGAAGGCCCAAATAAGGAACCTCAAAATCAGGGATGTATTTATGATAGCACAACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415807" ref_strand="+" ref_description="SGN-E415807 [STM-22-A11]">
      <seq>gcctcatcacactgaatttacctattcaccgccttaccctttttccgttactttacaataaacaatcgaaaactcacctacgatctccggcatcactctgcgccgttcacggcgtttcgccaccgtagaccgccgacgtacgagaagctgaataaatgggaggaaataacagaaaacgatgctagtaaacctaaaacccggaagcccaagaacccgtcttattccggtcagggcttgtttgttgaaggcggaattatatctgattggggcgattgcaattctcctccttcaagagggagaaatttgaagagtgaaaatggaagtggaaatggcaattcaaggaatcgtaatgcagctgttagcagctcgaagaatgcttcgagttcgaaaagtgaatggaagaaaagtggaggaagtgagatccgctatgtatacccttctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="90391" stop="89250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90092" g_stop="89796" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89795" i_stop="89698" i_length="98">
            <donor d_prob="0.929" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89697" g_stop="89550" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="443" r_length="148" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E415807" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90092" e_stop="89796"/>
          <exon e_start="89697" e_stop="89550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCATCACACTGAATTTAACCTCTTCACCGCCTTACCATTTTCACCTAAACTTTACAATAAAACAATCGAAAACTCACCACCGATCTCCGCCATCTGTCTCCGCCGTTCACGGCGTTTCGCCACTGTACACCGCCGA-GTATGAGAAGCTGAATGAAATGGGAGGAAATAACAGAAAACGAT-CTAATAAACCTAAAACCCGGAAGCCTAGGAACCCGTCTTATTCGGGTCGGGGCTTGTTTGTTGAAGGCGGAGTCTTATCTGATTGGGGCGATTTCAATTCTCCTCCTTCAAGTGGTTTTCTCTGAATCATATATATATATGTATATGTTGTGTGTGTATTTATAGTGATATTGTTTGTTTATTTGTTAATTTATTTGATTTTGGGAATTTAGGGAGAAATTTGAAGGGTGAATATGGAAATGGAAATGGCAATTCAAGGAATCGTAATGCAGCTGTTAGCAGCTCGATGAATGCTTCGAGTTCGAAAACTGAATTGAAGAAGAGTAGAGGAAGTGAGATCCGTTATGTATACCCATCTGC</genome_strand>
        <mrna_strand>GCCTCATCACACTGAATTT-ACCTATTCACCGCCTTACCCTTTT-TCCGTTACTTTACAAT-AAACAATCGAAAACTCACCTACGATCTCCGGCATCACTCTGCGCCGTTCACGGCGTTTCGCCACCGTAGACCGCCGACGTACGAGAAGCTGAAT-AAATGGGAGGAAATAACAGAAAACGATGCTAGTAAACCTAAAACCCGGAAGCCCAAGAACCCGTCTTATTCCGGTCAGGGCTTGTTTGTTGAAGGCGGAATTATATCTGATTGGGGCGATTGCAATTCTCCTCCTTCAAGAG..................................................................................................GGAGAAATTTGAAGAGTGAAAATGGAAGTGGAAATGGCAATTCAAGGAATCGTAATGCAGCTGTTAGCAGCTCGAAGAATGCTTCGAGTTCGAAAAGTGAATGGAAGAAAAGTGGAGGAAGTGAGATCCGCTATGTATACCCTTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714767" ref_strand="+" ref_description="SGN-E714767 [FB12BE07]">
      <seq>atttctctctcccttcacgagatttatttaattgaaaaatggctacgggagctgccggcgacggcctattccggggagtattcgacggatgtatttccggtcacgatatggggattcaacagagaccgtaccaccggaactgtagctgtaaactacataaatctcgtggaaattgctctcattcttctcgttgtaccaacgtatcttacccaattcgaagatcctggagcgaaagctgtttatcgttggccgccggcgcttacgccggtgcctccggtcattcatcgacgtgctcttctccggcttccggcgtcggcgggtcggatctcaccggaaagaagaacttggttcattctactagtgatgaatatgacgacgtcgttttgtttaaggtttgattgaaattattttttgaattaatatgattaattcataaagtacaaaattattgtaaacaatgattcaaaaaattgtttatttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="95099" stop="96179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95399" g_stop="95878" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="481" polyA_stop="508"/>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E714767" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95399" e_stop="95878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCTCTCCCTTCACGAGATTTATTTAATTGAAAAATGGCTACGGGAGCTGCCGGCGACGGCCTATTCCGGGGAGTATTCGACGGATGTATTTCCGGTCACGATATGGGGATTCAACAGAGACCGTACCACCGGAACTGTAGCTGTAAACTACATAAATCTCGTGGAAATTGCTCTCATTCTTCTCGTTGTACCAACGTATCTTACCCAATTCGAAGATCCTGGAGCGAAAGCTGTTTATCGTTGGCCGCCGGCGCTTACGCCGGTGCCTCCGGTCATTCATCGACGTGCTCTTCTCCGGCTTCCGGCGTCGGCGGGTCGGATCTCACCGGAAAGAAGAACTTGGTTCGTTCTACTAGTGATGAATATGACGACGTCGTTTTGTTTAAGGTTTGATTGAAATTATTTTTTGAATTAATATGATTAATTCATAAAGTACAAAATTATTGTAAACAATGATTCAAAAAATTGTTTATTT</genome_strand>
        <mrna_strand>ATTTCTCTCTCCCTTCACGAGATTTATTTAATTGAAAAATGGCTACGGGAGCTGCCGGCGACGGCCTATTCCGGGGAGTATTCGACGGATGTATTTCCGGTCACGATATGGGGATTCAACAGAGACCGTACCACCGGAACTGTAGCTGTAAACTACATAAATCTCGTGGAAATTGCTCTCATTCTTCTCGTTGTACCAACGTATCTTACCCAATTCGAAGATCCTGGAGCGAAAGCTGTTTATCGTTGGCCGCCGGCGCTTACGCCGGTGCCTCCGGTCATTCATCGACGTGCTCTTCTCCGGCTTCCGGCGTCGGCGGGTCGGATCTCACCGGAAAGAAGAACTTGGTTCATTCTACTAGTGATGAATATGACGACGTCGTTTTGTTTAAGGTTTGATTGAAATTATTTTTTGAATTAATATGATTAATTCATAAAGTACAAAATTATTGTAAACAATGATTCAAAAAATTGTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346134" ref_strand="+" ref_description="SGN-E346134 [cTOF-34-M23]">
      <seq>tctcccttcacgagatttatttaattgaaaaatggctacgggagctgccggcgacggcctattccggggagtattcgacggatgtatttccggtcacgatatggggattcaacagagaccgtaccaccggaactgtagctgtaaactacataaatctcgtggaaattgctctcattcttctcgttgtaccaacgtatcttacccaattcgaagatcctggagcgaaagctgtttatcgttggccgccggcgcttacgccggtgcctccggtcattcatcgacgtgctcttctccggcttccggcgtcggcgggtcggatctcaccggaaagaagaacttggttcgttctactagtgatgaatatgacgacgtcgttttgtttaaggtttgattgaaattattttttgaattaatatgattaattcataaagtacaaaattattgtaaacaatgattcaaaaaattgtttatttatttatttatttatttattttggggttttcgtgttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="95106" stop="96225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95406" g_stop="95925" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E346134" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95406" e_stop="95925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCTTCACGAGATTTATTTAATTGAAAAATGGCTACGGGAGCTGCCGGCGACGGCCTATTCCGGGGAGTATTCGACGGATGTATTTCCGGTCACGATATGGGGATTCAACAGAGACCGTACCACCGGAACTGTAGCTGTAAACTACATAAATCTCGTGGAAATTGCTCTCATTCTTCTCGTTGTACCAACGTATCTTACCCAATTCGAAGATCCTGGAGCGAAAGCTGTTTATCGTTGGCCGCCGGCGCTTACGCCGGTGCCTCCGGTCATTCATCGACGTGCTCTTCTCCGGCTTCCGGCGTCGGCGGGTCGGATCTCACCGGAAAGAAGAACTTGGTTCGTTCTACTAGTGATGAATATGACGACGTCGTTTTGTTTAAGGTTTGATTGAAATTATTTTTTGAATTAATATGATTAATTCATAAAGTACAAAATTATTGTAAACAATGATTCAAAAAATTGTTTATTTATTTATTTATTTATTTATTTTGGGGTTTTCGTGTTCATATATTAGAA</genome_strand>
        <mrna_strand>TCTCCCTTCACGAGATTTATTTAATTGAAAAATGGCTACGGGAGCTGCCGGCGACGGCCTATTCCGGGGAGTATTCGACGGATGTATTTCCGGTCACGATATGGGGATTCAACAGAGACCGTACCACCGGAACTGTAGCTGTAAACTACATAAATCTCGTGGAAATTGCTCTCATTCTTCTCGTTGTACCAACGTATCTTACCCAATTCGAAGATCCTGGAGCGAAAGCTGTTTATCGTTGGCCGCCGGCGCTTACGCCGGTGCCTCCGGTCATTCATCGACGTGCTCTTCTCCGGCTTCCGGCGTCGGCGGGTCGGATCTCACCGGAAAGAAGAACTTGGTTCGTTCTACTAGTGATGAATATGACGACGTCGTTTTGTTTAAGGTTTGATTGAAATTATTTTTTGAATTAATATGATTAATTCATAAAGTACAAAATTATTGTAAACAATGATTCAAAAAATTGTTTATTTATTTATTTATTTATTTATTTTGGGGTTTTCGTGTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224780" ref_strand="+" ref_description="SGN-E224780 [cLEL-27-N14](-)">
      <seq>gaccgtaccaccggaactgtagctgtaaactacataaatctcgtggaaattgctctcattcttctcgttgtaccaacgtatcttacccaattcgaagatcctggagcgaaagctgtttatcgttggccgccggcgcttacgccggtgcctccggtcattcatcgacgtgctcttctccggcttccggcgtcggcgggtcggatctcaccggaaagaagaacttggttcgttctactagtgatgaatatgnnnnngtcgttttgtttaaggtttgattgaaattattttttgaattaatatgattaattcataaagtacaaaattattgtaaacaatgattcaaaaaattgtttatttatttatttatttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="95222" stop="96191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95522" g_stop="95890" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="370" polyA_stop="387"/>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E224780" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95522" e_stop="95890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCGTACCACCGGAACTGTAGCTGTAAACTACATAAATCTCGTGGAAATTGCTCTCATTCTTCTCGTTGTACCAACGTATCTTACCCAATTCGAAGATCCTGGAGCGAAAGCTGTTTATCGTTGGCCGCCGGCGCTTACGCCGGTGCCTCCGGTCATTCATCGACGTGCTCTTCTCCGGCTTCCGGCGTCGGCGGGTCGGATCTCACCGGAAAGAAGAACTTGGTTCGTTCTACTAGTGATGAATATGACGACGTCGTTTTGTTTAAGGTTTGATTGAAATTATTTTTTGAATTAATATGATTAATTCATAAAGTACAAAATTATTGTAAACAATGATTCAAAAAATTGTTTATTTATTTATTTATTT</genome_strand>
        <mrna_strand>GACCGTACCACCGGAACTGTAGCTGTAAACTACATAAATCTCGTGGAAATTGCTCTCATTCTTCTCGTTGTACCAACGTATCTTACCCAATTCGAAGATCCTGGAGCGAAAGCTGTTTATCGTTGGCCGCCGGCGCTTACGCCGGTGCCTCCGGTCATTCATCGACGTGCTCTTCTCCGGCTTCCGGCGTCGGCGGGTCGGATCTCACCGGAAAGAAGAACTTGGTTCGTTCTACTAGTGATGAATATGNNNNNGTCGTTTTGTTTAAGGTTTGATTGAAATTATTTTTTGAATTAATATGATTAATTCATAAAGTACAAAATTATTGTAAACAATGATTCAAAAAATTGTTTATTTATTTATTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224560" ref_strand="+" ref_description="SGN-E224560 [cLEL-27-N14](-)">
      <seq>gctgtaaactacataaatctcgtggaaattgctctcattcttctcgttgtaccaacgtatcttacccaattcgaagatcctggagcgaaagctgtttatcgttggcagccggagcttacgccggtgcctccggtcattcatcgacgtgctcttctccggcttccggcgtcgacgggtcggatctcaccggaaagaagaacttggttcgttctactagtgatgaatatgaccacgtcgttttgtttaaggtttgattgaaattattttttgaattaatatgattaattcataaagtacaaaattattgtaaacaatgattcaaaaaattgtttatttatttatttatttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="95243" stop="96191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95543" g_stop="95890" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="349" polyA_stop="366"/>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E224560" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95543" e_stop="95890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTAAACTACATAAATCTCGTGGAAATTGCTCTCATTCTTCTCGTTGTACCAACGTATCTTACCCAATTCGAAGATCCTGGAGCGAAAGCTGTTTATCGTTGGCCGCCGGCGCTTACGCCGGTGCCTCCGGTCATTCATCGACGTGCTCTTCTCCGGCTTCCGGCGTCGGCGGGTCGGATCTCACCGGAAAGAAGAACTTGGTTCGTTCTACTAGTGATGAATATGACGACGTCGTTTTGTTTAAGGTTTGATTGAAATTATTTTTTGAATTAATATGATTAATTCATAAAGTACAAAATTATTGTAAACAATGATTCAAAAAATTGTTTATTTATTTATTTATTT</genome_strand>
        <mrna_strand>GCTGTAAACTACATAAATCTCGTGGAAATTGCTCTCATTCTTCTCGTTGTACCAACGTATCTTACCCAATTCGAAGATCCTGGAGCGAAAGCTGTTTATCGTTGGCAGCCGGAGCTTACGCCGGTGCCTCCGGTCATTCATCGACGTGCTCTTCTCCGGCTTCCGGCGTCGACGGGTCGGATCTCACCGGAAAGAAGAACTTGGTTCGTTCTACTAGTGATGAATATGACCACGTCGTTTTGTTTAAGGTTTGATTGAAATTATTTTTTGAATTAATATGATTAATTCATAAAGTACAAAATTATTGTAAACAATGATTCAAAAAATTGTTTATTTATTTATTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735377" ref_strand="+" ref_description="SGN-E735377 [LC01BC12]">
      <seq>atgctcatagccacggagatcatgaacatgcccacggtgagcataaacatatacgtggaattagtgttagccgacaccatcaccataatgagggaccttcaaaccgagatcaacacatccatgcacacgacgctgacaacactgtgcctctacttaaggattcctgtgagggtgaaggtgaaaagaaaaagaagcagcggaatataaatgttcagggggcttatcttcatgtattaggagattctattcagagcataggcgtcatgattggaggagctatcatatggtataaaccagaatggaaaatcattgatctcatctgcactctcattttctctgtcattgttcttgccacaaccattaggatgattcggagtattcttgaaggattaatggagagcacacctacagaaatcgacgcaacaaggcttgagaagggtctttgtgagatggaagaggttgttgcaatccatgaattgcatatttgggcgattacagtcgggaaagtactcttggcttgccatgtcaagattaaacctgatgctgatgctgacatggtgctggataaggttatcgattatattagaagggaatataacattagccacgttaccattcaaatagaaagagagtagtgtggaggtaaagtttgtttgcctgttgtactcgtcattggcttctatattttttcggatattagttgaaacagtaaaacatcatctggctaggcgattccagtatctgttttgttttagtaaatcatggtcttttagcatgttggcttgctttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="100061" stop="98671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99761" g_stop="98971" g_length="791"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="791" r_length="791" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E735377" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99761" e_stop="98971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTCATAGCCACGGTGATCATGAACATGCCCACGGTGAGCATAAACATATACATGGAATTAGTGTTAGCCGACACCATCACCATAATGAGGGACCTTCAAACCGAGATCAACACATCCATGCACACGACGCTGACAACACTGTGCCTCTACTTAAGGATTCCTGTGAGGGTGAAGGTGAAAAGAAAAAGAAGCAGCGGAATATAAATGTTCAGGGGGCTTATCTTCATGTATTAGGAGATTCTATTCAGAGCATAGGCGTCATGATTGGAGGAGCTATCATATGGTATAAACCAGAATGGAAAATCATTGATCCCATCTGCACTCTCATTTTCTCTGTCATTGTTCTTGCCACAACCATTAGGATGATTCGGAGTATTCTTGAAGTATTAATGGAGAGCACACCTAGAGAAATCGACGCAACAAGGCTTGAGAAGGGTCTTTGTGAGATGGAAGAGGTTGTTGCAATCCATGAATTGCATATTTGGGCGATTACAGTCGGGAAAGTACTCTTGGCTTGCCATGTCAAGATTAAACCTGATGCTGATGCTGACATGGTGCTGGATAAGGTTATCGATTATATTAGAAGGGAATATAACATTAGCCACGTTACCATTCAAATAGAAAGAGAGTAGTGTGGAGGTAAAGTTTGTTTGCCTGTTGTACTCGTCATTGGCTTCTATATTTTTTCGGATATTAGTTGAAACAGTAAAACATCATCTGGCTAAGCGATTCCAGTATCTGTTTCGTTTTAGTAAATCATGGTCTTTTAGCATGTTGGCTTGCTTTAC</genome_strand>
        <mrna_strand>ATGCTCATAGCCACGGAGATCATGAACATGCCCACGGTGAGCATAAACATATACGTGGAATTAGTGTTAGCCGACACCATCACCATAATGAGGGACCTTCAAACCGAGATCAACACATCCATGCACACGACGCTGACAACACTGTGCCTCTACTTAAGGATTCCTGTGAGGGTGAAGGTGAAAAGAAAAAGAAGCAGCGGAATATAAATGTTCAGGGGGCTTATCTTCATGTATTAGGAGATTCTATTCAGAGCATAGGCGTCATGATTGGAGGAGCTATCATATGGTATAAACCAGAATGGAAAATCATTGATCTCATCTGCACTCTCATTTTCTCTGTCATTGTTCTTGCCACAACCATTAGGATGATTCGGAGTATTCTTGAAGGATTAATGGAGAGCACACCTACAGAAATCGACGCAACAAGGCTTGAGAAGGGTCTTTGTGAGATGGAAGAGGTTGTTGCAATCCATGAATTGCATATTTGGGCGATTACAGTCGGGAAAGTACTCTTGGCTTGCCATGTCAAGATTAAACCTGATGCTGATGCTGACATGGTGCTGGATAAGGTTATCGATTATATTAGAAGGGAATATAACATTAGCCACGTTACCATTCAAATAGAAAGAGAGTAGTGTGGAGGTAAAGTTTGTTTGCCTGTTGTACTCGTCATTGGCTTCTATATTTTTTCGGATATTAGTTGAAACAGTAAAACATCATCTGGCTAGGCGATTCCAGTATCTGTTTTGTTTTAGTAAATCATGGTCTTTTAGCATGTTGGCTTGCTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346421" ref_strand="+" ref_description="SGN-E346421 [cTOF-23-M22]">
      <seq>ttttatctcttcccccttttcctcccttcttatatagggtatataccccatattatgcctacagcctatatagcataagccaccatagctaaatttggtgaatttgatgatttgggtcggttaaaaatccaatctttataatacccttttgaaatctcagctcagatttgtaagatggatacgcagaatctggaacatggacaagtaattgaggtgagtgttgacataacaggtcaagagaaggggactaaaatctgtggttcaggaccgtgtggattctcagatgttaaacctgatgctgatgctgacatggtgctggataaggttatcgattatattagaagggaatataacattagccacgttaccattcaaatagaaagagagtagtgtggaggtaaagtttgtttgcctgttgtactcgtcattggcttctatattttttcggatattagttgaaacagtaaaacatcatctggctaagcgattccagtatctngtttcgttttagtaaatncatggtcttttagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="102914" stop="98687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102614" g_stop="102441" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102440" i_stop="100378" i_length="2063">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100377" g_stop="100267" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="285" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100266" i_stop="99232" i_length="1035">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99231" g_stop="98990" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="529" r_length="244" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="541"/>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E346421" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102614" e_stop="102441"/>
          <exon e_start="100377" e_stop="100267"/>
          <exon e_start="99231" e_stop="98990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCTCTTCCCCCTTTTCCTCCCTTCTTATATAGGGTATATACCCCATATTATGCCTACAGCCTATATAGCATAAGCCACCATAGCTAAATTTGGTGAATTTGATGATTTGGGTCGGTTAAAAATCCAATCTTTATAATACCCTTTTGAAATCTCAGCTCAGATTTGTAAGGTACCCCTTCAATTTTGTTTTCTGTTTAGAGGGTTGTTTAGTTTTCTCTTTCTTGTTGTTGTTGTGATTGAATCTTGTTATCATCTGTTCTTTATGTTTATGGTGTTTCAGTTATTGCATTGTTGTTGCTGTTTTCTTATTAGTTGCTGTGTTTTCTGCATTGTCATTAGCACTTTTTTGTAACTACTTTGATTTGTTGTACTCGAGTTAAGGGTGTGTGGAAACAGCCTCTCCATTAGGCAGGGGGTAAGGTCTGACTCTCTACTTGTGTAATTGAATCTTGTTATCGTGTCTGATGTTTATTGTGTTTTGATAATTGCATTGTTGTTACTGTTTGTTTGTTGCCATTTTCTTTTTGCTCATATCTACTTTGATTTGGTTTATTTTGCTTCGTGGGATTTCATTGGATATGTTGTTGGATATGTTGTTGTTGTTGGAGTAATTGAATCTTGGGTTGATTAAGATATGTATGATGCACTTTTTAGGTGGATTGCTTACTGGCTTTTGGATTTTTGTGTTTTTTATACTGCATTGGGAGAATTGTTTAAAGTTATTTTGTTATCATTGTGTCAGCTTTTCTTTTAGCCTTACTTTTGGTCCTATCTTTGTTTTTGATGATGTGTGCTTATTTCTTAATGTACTTTAAACATTGGGTTGATAAAATATCATGATTTTCAGTGTATTTACATATACATATGCAGAGTTATATATCTGAAGTCTTTTTCAGTCTATAGGCTTTTCTTGCTGGTGTATAGGACATACTTATAGGGGTTAAGGTATGTGCATCAATTCCCCCCTTTGATTGCTTCTTCGTTAGATTTTGAAGTTGAAACTTGAAATTTTTCGAGCGGAGGTCCCAGAAACCCAAAACCTGGTCTTAGCTAGTGTTTAGGACATACTATGACCAAACACTAGCAAATTCTGTGTTAATGCTTCATCTTGTTTTGTGTTATCAGCTCTTAGTTATCAAGTTTTGAGCTGTCTTTTACTGAGTTGTGAACTGAAAGTTTTACTGGTTCTTGTTATTGGGAATTAGAATTTGGCTTCTTTGATTTGACCTGTAATTTTCGACAATTAGTTCGACAGTGAGGAACTTGTTCTGGACTTGAATTCCAAACAGGGAGTGGTTTTGGTCTCTTGGGTGCTGTTAATTGAGAGTTCAACTTGAGCTAGACTTCAGTTTGGAAAGGTAAATGCCATCGAGGTGTTGCTGTTTTTTAGTGGAAACTTCATTAAGGAATTCCTTGCTGTGATTGAAGAGTTCCCTTAGGCTGCTTATTTGTGGTTAGATATGGCACGAAATATTAAATTTTTGCTTTTAGATTTAAACTTAATGGAGTTGAGAATTGTTACAGCTCTCGAGTAGAAGGCTCATGCAGTTGATGTGAATGAAACTTTGCACTGCTGCTGCTGAAATCTATATTTGTAGTTGTTTCAGTTCAGACTTATTGGGACTGAACTAAGTTTGAGTCTGGTTTAAGTTTGGAAAGTATTTAGTTCCACTGTTGTTTATTTTGATTAACGATTCTGGAGCTGCGAGATTTTAATGAATCAATGCAGTATCTAAGTGCATCTGCTTTTCTCTGTGGAAGTTTAGTCACACATTGTACTTATGAAAATGTTCTTTGTTGTAGATTGCTCCAACTAGATGAATGCCATAAGTTGAGGACTGATGACACAAATACCTTCGTTATTAACTTTCTTTTTGTTGACATAGTCGATGAGATGTAGCATGTTCAGATTTTAATAGAACTCGGCAGAGGAATTTTCGAGTGCCTCCAGTCTATCACTTGTATTACTGATACAAGTCTACCGCTTGTCATTTGAAATATCTAGATCCATGTTTATAGTTGCTTCCTCGTAGCTAGTGACACTGATTAATTTGTTTGAGCTGTGCATTTGTTGTTCTGCTTGTCGTTTTATGTATAAAGACGGAGTACTACTAGCTCTATCTGGGCTTATCATGATTTAGAATGAGCCAATGACTCATGTGGGACACATTTAGATAGTTAGACTCATTTATCTTGTTACTGAGTGACAATTTTATAAATCTGTTTTTCCAGATGGATACGCAGAATCTGGAACATGGACAAGTAATTGAGGTGAGTGTTGACATAACAGGTCAAGAGAAGGGGACTAAAATCTGTGGTTCAGGACCGTGTGGATTCTCAGATGTTAACACCATGTCTAAGGATGCACAGGAGAGATCAGCATCTATGAGGAAACTGTTCATTGCGGTTGTCCTATGCATCATTTTTATGGCTGTCGAGGTTGTCGGAGGTATTAAAGCCAACAGTCTTGCAATTTTGACGGATGCGGCTCATCTATTGTCAGATGTTGCAGCTTTTGCAATATCCTTGTTTTCACTCTGGGCATCAGGATGGGAGGCTAATCCACGCCAGTCCTATGGGTTTTTTAGAATTGAGATACTTGGGGCACTAGTTTCTATCCAAATGATATGGCTTCTAGCTGGGATCCTTGTTTACGAAGCCATTGCTCGACTTATACATGATACAGGTGAAGTTCAAGGTTTCCTCATGTTTGTGGTGTCTGCATTTGGATTAGGAGTGAACCTCATCATGGCACTCTTGCTAGGTCATGATCACGGCCACGGCCACGGCCATGGACACAGCCACGGTCATGACCACGGCCATGAACACAGTCATAGTCATGAAGAGCATGCTCATAGCCACGGTGATCATGAACATGCCCACGGTGAGCATAAACATATACATGGAATTAGTGTTAGCCGACACCATCACCATAATGAGGGACCTTCAAACCGAGATCAACACATCCATGCACACGACGCTGACAACACTGTGCCTCTACTTAAGGATTCCTGTGAGGGTGAAGGTGAAAAGAAAAAGAAGCAGCGGAATATAAATGTTCAGGGGGCTTATCTTCATGTATTAGGAGATTCTATTCAGAGCATAGGCGTCATGATTGGAGGAGCTATCATATGGTATAAACCAGAATGGAAAATCATTGATCCCATCTGCACTCTCATTTTCTCTGTCATTGTTCTTGCCACAACCATTAGGATGATTCGGAGTATTCTTGAAGTATTAATGGAGAGCACACCTAGAGAAATCGACGCAACAAGGCTTGAGAAGGGTCTTTGTGAGATGGAAGAGGTTGTTGCAATCCATGAATTGCATATTTGGGCGATTACAGTCGGGAAAGTACTCTTGGCTTGCCATGTCAAGATTAAACCTGATGCTGATGCTGACATGGTGCTGGATAAGGTTATCGATTATATTAGAAGGGAATATAACATTAGCCACGTTACCATTCAAATAGAAAGAGAGTAGTGTGGAGGTAAAGTTTGTTTGCCTGTTGTACTCGTCATTGGCTTCTATATTTTTTCGGATATTAGTTGAAACAGTAAAACATCATCTGGCTAAGCGATTCCAGTATCT-GTTTCGTTTTAGTAAAT-CATGGTCTTTTA</genome_strand>
        <mrna_strand>TTTTATCTCTTCCCCCTTTTCCTCCCTTCTTATATAGGGTATATACCCCATATTATGCCTACAGCCTATATAGCATAAGCCACCATAGCTAAATTTGGTGAATTTGATGATTTGGGTCGGTTAAAAATCCAATCTTTATAATACCCTTTTGAAATCTCAGCTCAGATTTGTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATACGCAGAATCTGGAACATGGACAAGTAATTGAGGTGAGTGTTGACATAACAGGTCAAGAGAAGGGGACTAAAATCTGTGGTTCAGGACCGTGTGGATTCTCAGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAACCTGATGCTGATGCTGACATGGTGCTGGATAAGGTTATCGATTATATTAGAAGGGAATATAACATTAGCCACGTTACCATTCAAATAGAAAGAGAGTAGTGTGGAGGTAAAGTTTGTTTGCCTGTTGTACTCGTCATTGGCTTCTATATTTTTTCGGATATTAGTTGAAACAGTAAAACATCATCTGGCTAAGCGATTCCAGTATCTNGTTTCGTTTTAGTAAATNCATGGTCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273575" ref_strand="+" ref_description="SGN-E273575 [cLEN-6-H18]">
      <seq>atcatttttatggctgtcgaggttgtcggaggtattaaagccaacagtcttgcaattttgacggatgcggctcatctattgtcagatgttgcagcttttgcaatatccttgttttcactctgggcatcacgatgggaggctaatccacgccagtcctatgggttttttagaattgagatacttggggcactagtttctatccaaatgatatggcttctagctgggatccttgtttacgaagccattgctcgacttatacatgatacaggtgaagttcaaggtttcctcatgtttgtggtgtctgcatttggattaggagtgaacctcatcatggcactcttgctaggtcatgatcacggacacggtcacggtcatggacacagccacggtcatgaccacggccatgaacacagtcatagtcatgaagagcatgctcatagccacggtgatcatgaacatgcccactgtgagcataaacatatacatggaattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="100491" stop="99398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100191" g_stop="99698" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E273575" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100191" e_stop="99698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTTTTATGGCTGTCGAGGTTGTCGGAGGTATTAAAGCCAACAGTCTTGCAATTTTGACGGATGCGGCTCATCTATTGTCAGATGTTGCAGCTTTTGCAATATCCTTGTTTTCACTCTGGGCATCAGGATGGGAGGCTAATCCACGCCAGTCCTATGGGTTTTTTAGAATTGAGATACTTGGGGCACTAGTTTCTATCCAAATGATATGGCTTCTAGCTGGGATCCTTGTTTACGAAGCCATTGCTCGACTTATACATGATACAGGTGAAGTTCAAGGTTTCCTCATGTTTGTGGTGTCTGCATTTGGATTAGGAGTGAACCTCATCATGGCACTCTTGCTAGGTCATGATCACGGCCACGGCCACGGCCATGGACACAGCCACGGTCATGACCACGGCCATGAACACAGTCATAGTCATGAAGAGCATGCTCATAGCCACGGTGATCATGAACATGCCCACGGTGAGCATAAACATATACATGGAATTAG</genome_strand>
        <mrna_strand>ATCATTTTTATGGCTGTCGAGGTTGTCGGAGGTATTAAAGCCAACAGTCTTGCAATTTTGACGGATGCGGCTCATCTATTGTCAGATGTTGCAGCTTTTGCAATATCCTTGTTTTCACTCTGGGCATCACGATGGGAGGCTAATCCACGCCAGTCCTATGGGTTTTTTAGAATTGAGATACTTGGGGCACTAGTTTCTATCCAAATGATATGGCTTCTAGCTGGGATCCTTGTTTACGAAGCCATTGCTCGACTTATACATGATACAGGTGAAGTTCAAGGTTTCCTCATGTTTGTGGTGTCTGCATTTGGATTAGGAGTGAACCTCATCATGGCACTCTTGCTAGGTCATGATCACGGACACGGTCACGGTCATGGACACAGCCACGGTCATGACCACGGCCATGAACACAGTCATAGTCATGAAGAGCATGCTCATAGCCACGGTGATCATGAACATGCCCACTGTGAGCATAAACATATACATGGAATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722064" ref_strand="+" ref_description="SGN-E722064 [FC16AD05]">
      <seq>aatctttataatacccttttgaaatctcagctcaaatttgtaagggagtggttttggtctcttgggtgctgttaattgagagttcaacttgagctagacttcagtttggaaagatggatacgcagaatctggaacatggacaagtaattgaggtgagtgttgacataacaggtcaagagaaggggactaaaatctgtggttcagcaccgtgtggattctcagatgttaacaccatgtctaaggatgcacaggagagatcagcatctatgaggaaactgttcattgcggttgtcctatgcatcatttttatggctgtcgaggttgtcggaggtattaaagccaacagtcttgcaattttgacggatgcggctcatctattgtcagatgttgcagcttttgcaatatccttgttttcactctgggcatcaggatgggaggctaatccacgccagtcctatgggttttttagaattgagatacttggggcactagtttctatccaaatgatatggcttctagctgggatccttgtttacaaagccattgctcgacttatacatgatacaggtgaagttcaaggtttcctcatgtttgtggtgtctgcatttggattaggagtgaacctcatcatggcactcttgctaggtcatgatcacggccacggccacggccatggacacagccacggtcatgaccacggccatgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="102784" stop="99482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102484" g_stop="102441" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102440" i_stop="101321" i_length="1120">
            <donor d_prob="0.863" d_score="0.98"/>
            <acceptor a_prob="0.508" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101320" g_stop="101252" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="113" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101251" i_stop="100378" i_length="874">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100377" g_stop="99782" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="709" r_length="596" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E722064" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102484" e_stop="102441"/>
          <exon e_start="101320" e_stop="101252"/>
          <exon e_start="100377" e_stop="99782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTTATAATACCCTTTTGAAATCTCAGCTCAGATTTGTAAGGTACCCCTTCAATTTTGTTTTCTGTTTAGAGGGTTGTTTAGTTTTCTCTTTCTTGTTGTTGTTGTGATTGAATCTTGTTATCATCTGTTCTTTATGTTTATGGTGTTTCAGTTATTGCATTGTTGTTGCTGTTTTCTTATTAGTTGCTGTGTTTTCTGCATTGTCATTAGCACTTTTTTGTAACTACTTTGATTTGTTGTACTCGAGTTAAGGGTGTGTGGAAACAGCCTCTCCATTAGGCAGGGGGTAAGGTCTGACTCTCTACTTGTGTAATTGAATCTTGTTATCGTGTCTGATGTTTATTGTGTTTTGATAATTGCATTGTTGTTACTGTTTGTTTGTTGCCATTTTCTTTTTGCTCATATCTACTTTGATTTGGTTTATTTTGCTTCGTGGGATTTCATTGGATATGTTGTTGGATATGTTGTTGTTGTTGGAGTAATTGAATCTTGGGTTGATTAAGATATGTATGATGCACTTTTTAGGTGGATTGCTTACTGGCTTTTGGATTTTTGTGTTTTTTATACTGCATTGGGAGAATTGTTTAAAGTTATTTTGTTATCATTGTGTCAGCTTTTCTTTTAGCCTTACTTTTGGTCCTATCTTTGTTTTTGATGATGTGTGCTTATTTCTTAATGTACTTTAAACATTGGGTTGATAAAATATCATGATTTTCAGTGTATTTACATATACATATGCAGAGTTATATATCTGAAGTCTTTTTCAGTCTATAGGCTTTTCTTGCTGGTGTATAGGACATACTTATAGGGGTTAAGGTATGTGCATCAATTCCCCCCTTTGATTGCTTCTTCGTTAGATTTTGAAGTTGAAACTTGAAATTTTTCGAGCGGAGGTCCCAGAAACCCAAAACCTGGTCTTAGCTAGTGTTTAGGACATACTATGACCAAACACTAGCAAATTCTGTGTTAATGCTTCATCTTGTTTTGTGTTATCAGCTCTTAGTTATCAAGTTTTGAGCTGTCTTTTACTGAGTTGTGAACTGAAAGTTTTACTGGTTCTTGTTATTGGGAATTAGAATTTGGCTTCTTTGATTTGACCTGTAATTTTCGACAATTAGTTCGACAGTGAGGAACTTGTTCTGGACTTGAATTCCAAACAGGGAGTGGTTTTGGTCTCTTGGGTGCTGTTAATTGAGAGTTCAACTTGAGCTAGACTTCAGTTTGGAAAGGTAAATGCCATCGAGGTGTTGCTGTTTTTTAGTGGAAACTTCATTAAGGAATTCCTTGCTGTGATTGAAGAGTTCCCTTAGGCTGCTTATTTGTGGTTAGATATGGCACGAAATATTAAATTTTTGCTTTTAGATTTAAACTTAATGGAGTTGAGAATTGTTACAGCTCTCGAGTAGAAGGCTCATGCAGTTGATGTGAATGAAACTTTGCACTGCTGCTGCTGAAATCTATATTTGTAGTTGTTTCAGTTCAGACTTATTGGGACTGAACTAAGTTTGAGTCTGGTTTAAGTTTGGAAAGTATTTAGTTCCACTGTTGTTTATTTTGATTAACGATTCTGGAGCTGCGAGATTTTAATGAATCAATGCAGTATCTAAGTGCATCTGCTTTTCTCTGTGGAAGTTTAGTCACACATTGTACTTATGAAAATGTTCTTTGTTGTAGATTGCTCCAACTAGATGAATGCCATAAGTTGAGGACTGATGACACAAATACCTTCGTTATTAACTTTCTTTTTGTTGACATAGTCGATGAGATGTAGCATGTTCAGATTTTAATAGAACTCGGCAGAGGAATTTTCGAGTGCCTCCAGTCTATCACTTGTATTACTGATACAAGTCTACCGCTTGTCATTTGAAATATCTAGATCCATGTTTATAGTTGCTTCCTCGTAGCTAGTGACACTGATTAATTTGTTTGAGCTGTGCATTTGTTGTTCTGCTTGTCGTTTTATGTATAAAGACGGAGTACTACTAGCTCTATCTGGGCTTATCATGATTTAGAATGAGCCAATGACTCATGTGGGACACATTTAGATAGTTAGACTCATTTATCTTGTTACTGAGTGACAATTTTATAAATCTGTTTTTCCAGATGGATACGCAGAATCTGGAACATGGACAAGTAATTGAGGTGAGTGTTGACATAACAGGTCAAGAGAAGGGGACTAAAATCTGTGGTTCAGGACCGTGTGGATTCTCAGATGTTAACACCATGTCTAAGGATGCACAGGAGAGATCAGCATCTATGAGGAAACTGTTCATTGCGGTTGTCCTATGCATCATTTTTATGGCTGTCGAGGTTGTCGGAGGTATTAAAGCCAACAGTCTTGCAATTTTGACGGATGCGGCTCATCTATTGTCAGATGTTGCAGCTTTTGCAATATCCTTGTTTTCACTCTGGGCATCAGGATGGGAGGCTAATCCACGCCAGTCCTATGGGTTTTTTAGAATTGAGATACTTGGGGCACTAGTTTCTATCCAAATGATATGGCTTCTAGCTGGGATCCTTGTTTACGAAGCCATTGCTCGACTTATACATGATACAGGTGAAGTTCAAGGTTTCCTCATGTTTGTGGTGTCTGCATTTGGATTAGGAGTGAACCTCATCATGGCACTCTTGCTAGGTCATGATCACGGCCACGGCCACGGCCATGGACACAGCCACGGTCATGACCACGGCCATGAACA</genome_strand>
        <mrna_strand>AATCTTTATAATACCCTTTTGAAATCTCAGCTCAAATTTGTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTGGTTTTGGTCTCTTGGGTGCTGTTAATTGAGAGTTCAACTTGAGCTAGACTTCAGTTTGGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATACGCAGAATCTGGAACATGGACAAGTAATTGAGGTGAGTGTTGACATAACAGGTCAAGAGAAGGGGACTAAAATCTGTGGTTCAGCACCGTGTGGATTCTCAGATGTTAACACCATGTCTAAGGATGCACAGGAGAGATCAGCATCTATGAGGAAACTGTTCATTGCGGTTGTCCTATGCATCATTTTTATGGCTGTCGAGGTTGTCGGAGGTATTAAAGCCAACAGTCTTGCAATTTTGACGGATGCGGCTCATCTATTGTCAGATGTTGCAGCTTTTGCAATATCCTTGTTTTCACTCTGGGCATCAGGATGGGAGGCTAATCCACGCCAGTCCTATGGGTTTTTTAGAATTGAGATACTTGGGGCACTAGTTTCTATCCAAATGATATGGCTTCTAGCTGGGATCCTTGTTTACAAAGCCATTGCTCGACTTATACATGATACAGGTGAAGTTCAAGGTTTCCTCATGTTTGTGGTGTCTGCATTTGGATTAGGAGTGAACCTCATCATGGCACTCTTGCTAGGTCATGATCACGGCCACGGCCACGGCCATGGACACAGCCACGGTCATGACCACGGCCATGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599515" ref_strand="+" ref_description="SGN-E599515 [52505]">
      <seq>agggtatataccccattttatgcctatatagcacaagccaccatagctaaatttggtgaatttgatgatttgggtcggttaaaaatacgatctttctaatacccttttgaaatctcagctcagatttgtaagatggatacgcagaacccggaacatggacgtgtaattgaggtaagtgttgacataacaggtcaagagaaggggactaaaatctgtggttcagcaccgtgtggattctcagatgttaacaccatgtctaaggatgcacaggagagatcagcatccatgaggaaactgtgcattgcagttgttctctgcatcatttttatggctgtcgaggttgtcggaggtattaaagccaacagtcttgcaattttgacggatgcggctcatctactgtcagatgttgcagcttttgcaatatccttgttttcactctgggcatcaggatgggaagctaatccacgccagtcctatggtttttttagaattgagatacttggggcattagtttctatccaaatgatatggcttctagctgggatccttgtttatgaagccattgcccgacttatacatgatacaggtgaagttaaaggcttcctcatgtttgtggtgtctgcgtttggattaggagtgaacctcatcatggcactcttgttaggtcatgatcatggccacggccatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="102879" stop="99521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102579" g_stop="102441" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102440" i_stop="100378" i_length="2063">
            <donor d_prob="0.863" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100377" g_stop="99819" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="691" r_length="559" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E599515" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102579" e_stop="102441"/>
          <exon e_start="100377" e_stop="99819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTATATACCCCATATTATGCCTACAGCCTATATAGCATAAGCCACCATAGCTAAATTTGGTGAATTTGATGATTTGGGTCGGTTAAAAATCCAATCTTTATAATACCCTTTTGAAATCTCAGCTCAGATTTGTAAGGTACCCCTTCAATTTTGTTTTCTGTTTAGAGGGTTGTTTAGTTTTCTCTTTCTTGTTGTTGTTGTGATTGAATCTTGTTATCATCTGTTCTTTATGTTTATGGTGTTTCAGTTATTGCATTGTTGTTGCTGTTTTCTTATTAGTTGCTGTGTTTTCTGCATTGTCATTAGCACTTTTTTGTAACTACTTTGATTTGTTGTACTCGAGTTAAGGGTGTGTGGAAACAGCCTCTCCATTAGGCAGGGGGTAAGGTCTGACTCTCTACTTGTGTAATTGAATCTTGTTATCGTGTCTGATGTTTATTGTGTTTTGATAATTGCATTGTTGTTACTGTTTGTTTGTTGCCATTTTCTTTTTGCTCATATCTACTTTGATTTGGTTTATTTTGCTTCGTGGGATTTCATTGGATATGTTGTTGGATATGTTGTTGTTGTTGGAGTAATTGAATCTTGGGTTGATTAAGATATGTATGATGCACTTTTTAGGTGGATTGCTTACTGGCTTTTGGATTTTTGTGTTTTTTATACTGCATTGGGAGAATTGTTTAAAGTTATTTTGTTATCATTGTGTCAGCTTTTCTTTTAGCCTTACTTTTGGTCCTATCTTTGTTTTTGATGATGTGTGCTTATTTCTTAATGTACTTTAAACATTGGGTTGATAAAATATCATGATTTTCAGTGTATTTACATATACATATGCAGAGTTATATATCTGAAGTCTTTTTCAGTCTATAGGCTTTTCTTGCTGGTGTATAGGACATACTTATAGGGGTTAAGGTATGTGCATCAATTCCCCCCTTTGATTGCTTCTTCGTTAGATTTTGAAGTTGAAACTTGAAATTTTTCGAGCGGAGGTCCCAGAAACCCAAAACCTGGTCTTAGCTAGTGTTTAGGACATACTATGACCAAACACTAGCAAATTCTGTGTTAATGCTTCATCTTGTTTTGTGTTATCAGCTCTTAGTTATCAAGTTTTGAGCTGTCTTTTACTGAGTTGTGAACTGAAAGTTTTACTGGTTCTTGTTATTGGGAATTAGAATTTGGCTTCTTTGATTTGACCTGTAATTTTCGACAATTAGTTCGACAGTGAGGAACTTGTTCTGGACTTGAATTCCAAACAGGGAGTGGTTTTGGTCTCTTGGGTGCTGTTAATTGAGAGTTCAACTTGAGCTAGACTTCAGTTTGGAAAGGTAAATGCCATCGAGGTGTTGCTGTTTTTTAGTGGAAACTTCATTAAGGAATTCCTTGCTGTGATTGAAGAGTTCCCTTAGGCTGCTTATTTGTGGTTAGATATGGCACGAAATATTAAATTTTTGCTTTTAGATTTAAACTTAATGGAGTTGAGAATTGTTACAGCTCTCGAGTAGAAGGCTCATGCAGTTGATGTGAATGAAACTTTGCACTGCTGCTGCTGAAATCTATATTTGTAGTTGTTTCAGTTCAGACTTATTGGGACTGAACTAAGTTTGAGTCTGGTTTAAGTTTGGAAAGTATTTAGTTCCACTGTTGTTTATTTTGATTAACGATTCTGGAGCTGCGAGATTTTAATGAATCAATGCAGTATCTAAGTGCATCTGCTTTTCTCTGTGGAAGTTTAGTCACACATTGTACTTATGAAAATGTTCTTTGTTGTAGATTGCTCCAACTAGATGAATGCCATAAGTTGAGGACTGATGACACAAATACCTTCGTTATTAACTTTCTTTTTGTTGACATAGTCGATGAGATGTAGCATGTTCAGATTTTAATAGAACTCGGCAGAGGAATTTTCGAGTGCCTCCAGTCTATCACTTGTATTACTGATACAAGTCTACCGCTTGTCATTTGAAATATCTAGATCCATGTTTATAGTTGCTTCCTCGTAGCTAGTGACACTGATTAATTTGTTTGAGCTGTGCATTTGTTGTTCTGCTTGTCGTTTTATGTATAAAGACGGAGTACTACTAGCTCTATCTGGGCTTATCATGATTTAGAATGAGCCAATGACTCATGTGGGACACATTTAGATAGTTAGACTCATTTATCTTGTTACTGAGTGACAATTTTATAAATCTGTTTTTCCAGATGGATACGCAGAATCTGGAACATGGACAAGTAATTGAGGTGAGTGTTGACATAACAGGTCAAGAGAAGGGGACTAAAATCTGTGGTTCAGGACCGTGTGGATTCTCAGATGTTAACACCATGTCTAAGGATGCACAGGAGAGATCAGCATCTATGAGGAAACTGTTCATTGCGGTTGTCCTATGCATCATTTTTATGGCTGTCGAGGTTGTCGGAGGTATTAAAGCCAACAGTCTTGCAATTTTGACGGATGCGGCTCATCTATTGTCAGATGTTGCAGCTTTTGCAATATCCTTGTTTTCACTCTGGGCATCAGGATGGGAGGCTAATCCACGCCAGTCCTATGGGTTTTTTAGAATTGAGATACTTGGGGCACTAGTTTCTATCCAAATGATATGGCTTCTAGCTGGGATCCTTGTTTACGAAGCCATTGCTCGACTTATACATGATACAGGTGAAGTTCAAGGTTTCCTCATGTTTGTGGTGTCTGCATTTGGATTAGGAGTGAACCTCATCATGGCACTCTTGCTAGGTCATGATCACGGCCACGGCCACGGCC</genome_strand>
        <mrna_strand>AGGGTATATACCCC--ATT-T---TA-TGCCTATATAGCACAAGCCACCATAGCTAAATTTGGTGAATTTGATGATTTGGGTCGGTTAAAAATACGATCTTTCTAATACCCTTTTGAAATCTCAGCTCAGATTTGTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATACGCAGAACCCGGAACATGGACGTGTAATTGAGGTAAGTGTTGACATAACAGGTCAAGAGAAGGGGACTAAAATCTGTGGTTCAGCACCGTGTGGATTCTCAGATGTTAACACCATGTCTAAGGATGCACAGGAGAGATCAGCATCCATGAGGAAACTGTGCATTGCAGTTGTTCTCTGCATCATTTTTATGGCTGTCGAGGTTGTCGGAGGTATTAAAGCCAACAGTCTTGCAATTTTGACGGATGCGGCTCATCTACTGTCAGATGTTGCAGCTTTTGCAATATCCTTGTTTTCACTCTGGGCATCAGGATGGGAAGCTAATCCACGCCAGTCCTATGGTTTTTTTAGAATTGAGATACTTGGGGCATTAGTTTCTATCCAAATGATATGGCTTCTAGCTGGGATCCTTGTTTATGAAGCCATTGCCCGACTTATACATGATACAGGTGAAGTTAAAGGCTTCCTCATGTTTGTGGTGTCTGCGTTTGGATTAGGAGTGAACCTCATCATGGCACTCTTGTTAGGTCATGATCATGGCCACGGCCATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573824" ref_strand="+" ref_description="SGN-E573824 [33196]">
      <seq>cttctttttgccttacttttggttctatctttgtttttaatgatgtgtatttattcctgaatatactttaaacattgggctgataaaatctcatgattttcagtgtatttacatatacatattcagttatatatctgaagtttctttcagtcaataggtttttcttgctggtgtataggacatacttataggggtcaagatggatacgcagaacccggaacatggacgtgtaattgaggtaagtgttgacataacaggtcaagagaagggtactaaaatctgtggttcagcaccatgtggattctcagatgttaacaccatgtctaaggatgcgcaggagagatcagcatccatgaggaaactgtgcattgcagttgttctctgcatcatttttatggctgtcgaggttgtcggaggtattaaagccaacagtcttgcaattttgacggatgcggctcatctactgtcagatgttgcagcttttgcaatatccttgttttcactctgggcatcaggatgggaagctaatccacgccagtcctatggtttttttagaattgagatacttggggcattagtttctatccaaatgatatggcttctagctgggatccttgtttatgaagccattgcccgacttataaatgatacaggtgacgttaaaaggcttcctcatgtttgtggtgtctgcgtttggattaggagtgaacctcatcatggcactcttgttaggtcatgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="102164" stop="99536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101865" g_stop="101665" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101664" i_stop="100378" i_length="1287">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100377" g_stop="99836" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="742" r_length="543" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E573824" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101865" e_stop="101665"/>
          <exon e_start="100377" e_stop="99836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTTAGCCTTACTTTTGGTCCTATCTTTGTTTTTGATGATGTGTGCTTATTTCTTAATGTACTTTAAACATTGGGTTGATAAAATATCATGATTTTCAGTGTATTTACATATACATATGCAGAGTTATATATCTGAAGTCTTTTTCAGTCTATAGGCTTTTCTTGCTGGTGTATAGGACATACTTATAGGGGTTAAGGTATGTGCATCAATTCCCCCCTTTGATTGCTTCTTCGTTAGATTTTGAAGTTGAAACTTGAAATTTTTCGAGCGGAGGTCCCAGAAACCCAAAACCTGGTCTTAGCTAGTGTTTAGGACATACTATGACCAAACACTAGCAAATTCTGTGTTAATGCTTCATCTTGTTTTGTGTTATCAGCTCTTAGTTATCAAGTTTTGAGCTGTCTTTTACTGAGTTGTGAACTGAAAGTTTTACTGGTTCTTGTTATTGGGAATTAGAATTTGGCTTCTTTGATTTGACCTGTAATTTTCGACAATTAGTTCGACAGTGAGGAACTTGTTCTGGACTTGAATTCCAAACAGGGAGTGGTTTTGGTCTCTTGGGTGCTGTTAATTGAGAGTTCAACTTGAGCTAGACTTCAGTTTGGAAAGGTAAATGCCATCGAGGTGTTGCTGTTTTTTAGTGGAAACTTCATTAAGGAATTCCTTGCTGTGATTGAAGAGTTCCCTTAGGCTGCTTATTTGTGGTTAGATATGGCACGAAATATTAAATTTTTGCTTTTAGATTTAAACTTAATGGAGTTGAGAATTGTTACAGCTCTCGAGTAGAAGGCTCATGCAGTTGATGTGAATGAAACTTTGCACTGCTGCTGCTGAAATCTATATTTGTAGTTGTTTCAGTTCAGACTTATTGGGACTGAACTAAGTTTGAGTCTGGTTTAAGTTTGGAAAGTATTTAGTTCCACTGTTGTTTATTTTGATTAACGATTCTGGAGCTGCGAGATTTTAATGAATCAATGCAGTATCTAAGTGCATCTGCTTTTCTCTGTGGAAGTTTAGTCACACATTGTACTTATGAAAATGTTCTTTGTTGTAGATTGCTCCAACTAGATGAATGCCATAAGTTGAGGACTGATGACACAAATACCTTCGTTATTAACTTTCTTTTTGTTGACATAGTCGATGAGATGTAGCATGTTCAGATTTTAATAGAACTCGGCAGAGGAATTTTCGAGTGCCTCCAGTCTATCACTTGTATTACTGATACAAGTCTACCGCTTGTCATTTGAAATATCTAGATCCATGTTTATAGTTGCTTCCTCGTAGCTAGTGACACTGATTAATTTGTTTGAGCTGTGCATTTGTTGTTCTGCTTGTCGTTTTATGTATAAAGACGGAGTACTACTAGCTCTATCTGGGCTTATCATGATTTAGAATGAGCCAATGACTCATGTGGGACACATTTAGATAGTTAGACTCATTTATCTTGTTACTGAGTGACAATTTTATAAATCTGTTTTTCCAGATGGATACGCAGAATCTGGAACATGGACAAGTAATTGAGGTGAGTGTTGACATAACAGGTCAAGAGAAGGGGACTAAAATCTGTGGTTCAGGACCGTGTGGATTCTCAGATGTTAACACCATGTCTAAGGATGCACAGGAGAGATCAGCATCTATGAGGAAACTGTTCATTGCGGTTGTCCTATGCATCATTTTTATGGCTGTCGAGGTTGTCGGAGGTATTAAAGCCAACAGTCTTGCAATTTTGACGGATGCGGCTCATCTATTGTCAGATGTTGCAGCTTTTGCAATATCCTTGTTTTCACTCTGGGCATCAGGATGGGAGGCTAATCCACGCCAGTCCTATGGGTTTTTTAGAATTGAGATACTTGGGGCACTAGTTTCTATCCAAATGATATGGCTTCTAGCTGGGATCCTTGTTTACGAAGCCATTGCTCGACTTATACATGATACAGGTGAAGTT-CAAGGTTTCCTCATGTTTGTGGTGTCTGCATTTGGATTAGGAGTGAACCTCATCATGGCACTCTTGCTAGGTCATGATCA</genome_strand>
        <mrna_strand>CTTCTTTTTGCCTTACTTTTGGTTCTATCTTTGTTTTTAATGATGTGTATTTATTCCTGAATATACTTTAAACATTGGGCTGATAAAATCTCATGATTTTCAGTGTATTTACATATACATATTC--AGTTATATATCTGAAGTTTCTTTCAGTCAATAGGTTTTTCTTGCTGGTGTATAGGACATACTTATAGGGGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATACGCAGAACCCGGAACATGGACGTGTAATTGAGGTAAGTGTTGACATAACAGGTCAAGAGAAGGGTACTAAAATCTGTGGTTCAGCACCATGTGGATTCTCAGATGTTAACACCATGTCTAAGGATGCGCAGGAGAGATCAGCATCCATGAGGAAACTGTGCATTGCAGTTGTTCTCTGCATCATTTTTATGGCTGTCGAGGTTGTCGGAGGTATTAAAGCCAACAGTCTTGCAATTTTGACGGATGCGGCTCATCTACTGTCAGATGTTGCAGCTTTTGCAATATCCTTGTTTTCACTCTGGGCATCAGGATGGGAAGCTAATCCACGCCAGTCCTATGGTTTTTTTAGAATTGAGATACTTGGGGCATTAGTTTCTATCCAAATGATATGGCTTCTAGCTGGGATCCTTGTTTATGAAGCCATTGCCCGACTTATAAATGATACAGGTGACGTTAAAAGGCTTCCTCATGTTTGTGGTGTCTGCGTTTGGATTAGGAGTGAACCTCATCATGGCACTCTTGTTAGGTCATGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710418" ref_strand="+" ref_description="SGN-E710418 [FA55BE01]">
      <seq>acaaaacccaagaaagaatcttccccaaaatccattgtggccgtcccaatatatacagttggatttttgttttttgcatctctctgattcccttttatctcttccccctttttctcccttcttatatagggtatataccccatattatgcctacagcctatatagcataagccaccatagctaaatttggtgaatttgatgatttgggtcggttaaaaatccaatctttataatacccttttgaaatctcagctcagatttgtaagatggatacgcagaatctggaacatggacaagtaattgaggtgagtgttgacataacaggtcaagagaaggggactaaaatctgtggttcagcaccgtgtggattctcagatgttaacaccatgtctaaggatgcacaggagagatcagcatctatgaggaaactgttcattgcggttgtcctatgcatcatttttatggctgtcgaggttgtcggaggtattaaagccaacagtcttgcaattttgacggatgcggctcatctattgtcagatgttgcagcttttgcaatatccttgttttcactctgggcatcaggatgggaggctaatccacgccagtcctatgggttttttagaattgagatacttggggcactagtttctatccaaatgatatggcttctaacctgggatccttgtttacgaagccattgctcgacttatacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="103008" stop="99629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102708" g_stop="102441" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102440" i_stop="100378" i_length="2063">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100377" g_stop="99929" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="716" r_length="450" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E710418" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102708" e_stop="102441"/>
          <exon e_start="100377" e_stop="99929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACCCAAGAAAGAATCTTCCCCAAAATCCATTGTGGCCGTCCCAATATATATACAGTTGGATTTTTGTTTTTTGCATCTCTCTGATTCCCTTTTATCTCTTCCCCCTTTTCCTCCCTTCTTATATAGGGTATATACCCCATATTATGCCTACAGCCTATATAGCATAAGCCACCATAGCTAAATTTGGTGAATTTGATGATTTGGGTCGGTTAAAAATCCAATCTTTATAATACCCTTTTGAAATCTCAGCTCAGATTTGTAAGGTACCCCTTCAATTTTGTTTTCTGTTTAGAGGGTTGTTTAGTTTTCTCTTTCTTGTTGTTGTTGTGATTGAATCTTGTTATCATCTGTTCTTTATGTTTATGGTGTTTCAGTTATTGCATTGTTGTTGCTGTTTTCTTATTAGTTGCTGTGTTTTCTGCATTGTCATTAGCACTTTTTTGTAACTACTTTGATTTGTTGTACTCGAGTTAAGGGTGTGTGGAAACAGCCTCTCCATTAGGCAGGGGGTAAGGTCTGACTCTCTACTTGTGTAATTGAATCTTGTTATCGTGTCTGATGTTTATTGTGTTTTGATAATTGCATTGTTGTTACTGTTTGTTTGTTGCCATTTTCTTTTTGCTCATATCTACTTTGATTTGGTTTATTTTGCTTCGTGGGATTTCATTGGATATGTTGTTGGATATGTTGTTGTTGTTGGAGTAATTGAATCTTGGGTTGATTAAGATATGTATGATGCACTTTTTAGGTGGATTGCTTACTGGCTTTTGGATTTTTGTGTTTTTTATACTGCATTGGGAGAATTGTTTAAAGTTATTTTGTTATCATTGTGTCAGCTTTTCTTTTAGCCTTACTTTTGGTCCTATCTTTGTTTTTGATGATGTGTGCTTATTTCTTAATGTACTTTAAACATTGGGTTGATAAAATATCATGATTTTCAGTGTATTTACATATACATATGCAGAGTTATATATCTGAAGTCTTTTTCAGTCTATAGGCTTTTCTTGCTGGTGTATAGGACATACTTATAGGGGTTAAGGTATGTGCATCAATTCCCCCCTTTGATTGCTTCTTCGTTAGATTTTGAAGTTGAAACTTGAAATTTTTCGAGCGGAGGTCCCAGAAACCCAAAACCTGGTCTTAGCTAGTGTTTAGGACATACTATGACCAAACACTAGCAAATTCTGTGTTAATGCTTCATCTTGTTTTGTGTTATCAGCTCTTAGTTATCAAGTTTTGAGCTGTCTTTTACTGAGTTGTGAACTGAAAGTTTTACTGGTTCTTGTTATTGGGAATTAGAATTTGGCTTCTTTGATTTGACCTGTAATTTTCGACAATTAGTTCGACAGTGAGGAACTTGTTCTGGACTTGAATTCCAAACAGGGAGTGGTTTTGGTCTCTTGGGTGCTGTTAATTGAGAGTTCAACTTGAGCTAGACTTCAGTTTGGAAAGGTAAATGCCATCGAGGTGTTGCTGTTTTTTAGTGGAAACTTCATTAAGGAATTCCTTGCTGTGATTGAAGAGTTCCCTTAGGCTGCTTATTTGTGGTTAGATATGGCACGAAATATTAAATTTTTGCTTTTAGATTTAAACTTAATGGAGTTGAGAATTGTTACAGCTCTCGAGTAGAAGGCTCATGCAGTTGATGTGAATGAAACTTTGCACTGCTGCTGCTGAAATCTATATTTGTAGTTGTTTCAGTTCAGACTTATTGGGACTGAACTAAGTTTGAGTCTGGTTTAAGTTTGGAAAGTATTTAGTTCCACTGTTGTTTATTTTGATTAACGATTCTGGAGCTGCGAGATTTTAATGAATCAATGCAGTATCTAAGTGCATCTGCTTTTCTCTGTGGAAGTTTAGTCACACATTGTACTTATGAAAATGTTCTTTGTTGTAGATTGCTCCAACTAGATGAATGCCATAAGTTGAGGACTGATGACACAAATACCTTCGTTATTAACTTTCTTTTTGTTGACATAGTCGATGAGATGTAGCATGTTCAGATTTTAATAGAACTCGGCAGAGGAATTTTCGAGTGCCTCCAGTCTATCACTTGTATTACTGATACAAGTCTACCGCTTGTCATTTGAAATATCTAGATCCATGTTTATAGTTGCTTCCTCGTAGCTAGTGACACTGATTAATTTGTTTGAGCTGTGCATTTGTTGTTCTGCTTGTCGTTTTATGTATAAAGACGGAGTACTACTAGCTCTATCTGGGCTTATCATGATTTAGAATGAGCCAATGACTCATGTGGGACACATTTAGATAGTTAGACTCATTTATCTTGTTACTGAGTGACAATTTTATAAATCTGTTTTTCCAGATGGATACGCAGAATCTGGAACATGGACAAGTAATTGAGGTGAGTGTTGACATAACAGGTCAAGAGAAGGGGACTAAAATCTGTGGTTCAGGACCGTGTGGATTCTCAGATGTTAACACCATGTCTAAGGATGCACAGGAGAGATCAGCATCTATGAGGAAACTGTTCATTGCGGTTGTCCTATGCATCATTTTTATGGCTGTCGAGGTTGTCGGAGGTATTAAAGCCAACAGTCTTGCAATTTTGACGGATGCGGCTCATCTATTGTCAGATGTTGCAGCTTTTGCAATATCCTTGTTTTCACTCTGGGCATCAGGATGGGAGGCTAATCCACGCCAGTCCTATGGGTTTTTTAGAATTGAGATACTTGGGGCACTAGTTTCTATCCAAATGATATGGCTTCT-AGCTGGGATCCTTGTTTACGAAGCCATTGCTCGACTTATACATGA</genome_strand>
        <mrna_strand>ACAAAACCCAAGAAAGAATCTTCCCCAAAATCCATTGTGGCCGTCCC-A-ATATATACAGTTGGATTTTTGTTTTTTGCATCTCTCTGATTCCCTTTTATCTCTTCCCCCTTTTTCTCCCTTCTTATATAGGGTATATACCCCATATTATGCCTACAGCCTATATAGCATAAGCCACCATAGCTAAATTTGGTGAATTTGATGATTTGGGTCGGTTAAAAATCCAATCTTTATAATACCCTTTTGAAATCTCAGCTCAGATTTGTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATACGCAGAATCTGGAACATGGACAAGTAATTGAGGTGAGTGTTGACATAACAGGTCAAGAGAAGGGGACTAAAATCTGTGGTTCAGCACCGTGTGGATTCTCAGATGTTAACACCATGTCTAAGGATGCACAGGAGAGATCAGCATCTATGAGGAAACTGTTCATTGCGGTTGTCCTATGCATCATTTTTATGGCTGTCGAGGTTGTCGGAGGTATTAAAGCCAACAGTCTTGCAATTTTGACGGATGCGGCTCATCTATTGTCAGATGTTGCAGCTTTTGCAATATCCTTGTTTTCACTCTGGGCATCAGGATGGGAGGCTAATCCACGCCAGTCCTATGGGTTTTTTAGAATTGAGATACTTGGGGCACTAGTTTCTATCCAAATGATATGGCTTCTAACCTGGGATCCTTGTTTACGAAGCCATTGCTCGACTTATACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206993" ref_strand="+" ref_description="SGN-E206993 [cLEC-33-B10]">
      <seq>ctcttcccccttttcctcccttcttatatagggtatataccccatattatgcctacagcctatatagcataagccaccatagctaaatttggtgaatttgatgatttgggtcggttaaaaatccaatctttataatacccttttgaaatctcagctcagatttgtaagatggatacgcagaatctggaacatggacaagtaattgaggtgagtgttgacataacaggtcaagagaaggggactaaaatctgtggttcaagaccgtgtggattctcagatgttaacaccatgtctaaggatgcacaggagagatcagcatctatgaggaaactgttcattgcggttgtcctatgcatcattcttatggctgtcgaggttgtcggaggtattaaagccaacagtcttgcaattttgacggatgcggctcatctattgtcagatgttgcagcttttgcaatatccttgttttcactctgggcatcaagatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="102908" stop="99755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102608" g_stop="102441" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102440" i_stop="100378" i_length="2063">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100377" g_stop="100055" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="491" r_length="323" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E206993" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102608" e_stop="102441"/>
          <exon e_start="100377" e_stop="100055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCCCCCTTTTCCTCCCTTCTTATATAGGGTATATACCCCATATTATGCCTACAGCCTATATAGCATAAGCCACCATAGCTAAATTTGGTGAATTTGATGATTTGGGTCGGTTAAAAATCCAATCTTTATAATACCCTTTTGAAATCTCAGCTCAGATTTGTAAGGTACCCCTTCAATTTTGTTTTCTGTTTAGAGGGTTGTTTAGTTTTCTCTTTCTTGTTGTTGTTGTGATTGAATCTTGTTATCATCTGTTCTTTATGTTTATGGTGTTTCAGTTATTGCATTGTTGTTGCTGTTTTCTTATTAGTTGCTGTGTTTTCTGCATTGTCATTAGCACTTTTTTGTAACTACTTTGATTTGTTGTACTCGAGTTAAGGGTGTGTGGAAACAGCCTCTCCATTAGGCAGGGGGTAAGGTCTGACTCTCTACTTGTGTAATTGAATCTTGTTATCGTGTCTGATGTTTATTGTGTTTTGATAATTGCATTGTTGTTACTGTTTGTTTGTTGCCATTTTCTTTTTGCTCATATCTACTTTGATTTGGTTTATTTTGCTTCGTGGGATTTCATTGGATATGTTGTTGGATATGTTGTTGTTGTTGGAGTAATTGAATCTTGGGTTGATTAAGATATGTATGATGCACTTTTTAGGTGGATTGCTTACTGGCTTTTGGATTTTTGTGTTTTTTATACTGCATTGGGAGAATTGTTTAAAGTTATTTTGTTATCATTGTGTCAGCTTTTCTTTTAGCCTTACTTTTGGTCCTATCTTTGTTTTTGATGATGTGTGCTTATTTCTTAATGTACTTTAAACATTGGGTTGATAAAATATCATGATTTTCAGTGTATTTACATATACATATGCAGAGTTATATATCTGAAGTCTTTTTCAGTCTATAGGCTTTTCTTGCTGGTGTATAGGACATACTTATAGGGGTTAAGGTATGTGCATCAATTCCCCCCTTTGATTGCTTCTTCGTTAGATTTTGAAGTTGAAACTTGAAATTTTTCGAGCGGAGGTCCCAGAAACCCAAAACCTGGTCTTAGCTAGTGTTTAGGACATACTATGACCAAACACTAGCAAATTCTGTGTTAATGCTTCATCTTGTTTTGTGTTATCAGCTCTTAGTTATCAAGTTTTGAGCTGTCTTTTACTGAGTTGTGAACTGAAAGTTTTACTGGTTCTTGTTATTGGGAATTAGAATTTGGCTTCTTTGATTTGACCTGTAATTTTCGACAATTAGTTCGACAGTGAGGAACTTGTTCTGGACTTGAATTCCAAACAGGGAGTGGTTTTGGTCTCTTGGGTGCTGTTAATTGAGAGTTCAACTTGAGCTAGACTTCAGTTTGGAAAGGTAAATGCCATCGAGGTGTTGCTGTTTTTTAGTGGAAACTTCATTAAGGAATTCCTTGCTGTGATTGAAGAGTTCCCTTAGGCTGCTTATTTGTGGTTAGATATGGCACGAAATATTAAATTTTTGCTTTTAGATTTAAACTTAATGGAGTTGAGAATTGTTACAGCTCTCGAGTAGAAGGCTCATGCAGTTGATGTGAATGAAACTTTGCACTGCTGCTGCTGAAATCTATATTTGTAGTTGTTTCAGTTCAGACTTATTGGGACTGAACTAAGTTTGAGTCTGGTTTAAGTTTGGAAAGTATTTAGTTCCACTGTTGTTTATTTTGATTAACGATTCTGGAGCTGCGAGATTTTAATGAATCAATGCAGTATCTAAGTGCATCTGCTTTTCTCTGTGGAAGTTTAGTCACACATTGTACTTATGAAAATGTTCTTTGTTGTAGATTGCTCCAACTAGATGAATGCCATAAGTTGAGGACTGATGACACAAATACCTTCGTTATTAACTTTCTTTTTGTTGACATAGTCGATGAGATGTAGCATGTTCAGATTTTAATAGAACTCGGCAGAGGAATTTTCGAGTGCCTCCAGTCTATCACTTGTATTACTGATACAAGTCTACCGCTTGTCATTTGAAATATCTAGATCCATGTTTATAGTTGCTTCCTCGTAGCTAGTGACACTGATTAATTTGTTTGAGCTGTGCATTTGTTGTTCTGCTTGTCGTTTTATGTATAAAGACGGAGTACTACTAGCTCTATCTGGGCTTATCATGATTTAGAATGAGCCAATGACTCATGTGGGACACATTTAGATAGTTAGACTCATTTATCTTGTTACTGAGTGACAATTTTATAAATCTGTTTTTCCAGATGGATACGCAGAATCTGGAACATGGACAAGTAATTGAGGTGAGTGTTGACATAACAGGTCAAGAGAAGGGGACTAAAATCTGTGGTTCAGGACCGTGTGGATTCTCAGATGTTAACACCATGTCTAAGGATGCACAGGAGAGATCAGCATCTATGAGGAAACTGTTCATTGCGGTTGTCCTATGCATCATTTTTATGGCTGTCGAGGTTGTCGGAGGTATTAAAGCCAACAGTCTTGCAATTTTGACGGATGCGGCTCATCTATTGTCAGATGTTGCAGCTTTTGCAATATCCTTGTTTTCACTCTGGGCATCAGGATGGGA</genome_strand>
        <mrna_strand>CTCTTCCCCCTTTTCCTCCCTTCTTATATAGGGTATATACCCCATATTATGCCTACAGCCTATATAGCATAAGCCACCATAGCTAAATTTGGTGAATTTGATGATTTGGGTCGGTTAAAAATCCAATCTTTATAATACCCTTTTGAAATCTCAGCTCAGATTTGTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATACGCAGAATCTGGAACATGGACAAGTAATTGAGGTGAGTGTTGACATAACAGGTCAAGAGAAGGGGACTAAAATCTGTGGTTCAAGACCGTGTGGATTCTCAGATGTTAACACCATGTCTAAGGATGCACAGGAGAGATCAGCATCTATGAGGAAACTGTTCATTGCGGTTGTCCTATGCATCATTCTTATGGCTGTCGAGGTTGTCGGAGGTATTAAAGCCAACAGTCTTGCAATTTTGACGGATGCGGCTCATCTATTGTCAGATGTTGCAGCTTTTGCAATATCCTTGTTTTCACTCTGGGCATCAAGATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300884" ref_strand="+" ref_description="SGN-E300884 [cLEW-8-B18]">
      <seq>acccaagaaagaatcttccccaaaatccattgtggccgtcccaatatatatacagttggatttttgttttttgcatctctctgattcccttttatctcttcccccttttcctcccttcttatatagggtatataccccatattatgcctacagcctatatagcataagccaccatagctaaatttggtgaatttgatgatttgggtcggttaaaaatccaatctttataatacccttttgaaatctcagctcagatttgtaagatggatacgcagaatctggaacatggacaagtaattgaggtgagtgttgacataacaggtcaagagaaggggactaaaatctgtggttcacgaccgtgtggattctcagatgttaacaccatgtctaaggatgcacaggagagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="-" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="103003" stop="99932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102703" g_stop="102441" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102440" i_stop="100378" i_length="2063">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100377" g_stop="100232" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="409" r_length="146" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="-" ref_id="SGN-E300884" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102703" e_stop="102441"/>
          <exon e_start="100377" e_stop="100232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAAGAAAGAATCTTCCCCAAAATCCATTGTGGCCGTCCCAATATATATACAGTTGGATTTTTGTTTTTTGCATCTCTCTGATTCCCTTTTATCTCTTCCCCCTTTTCCTCCCTTCTTATATAGGGTATATACCCCATATTATGCCTACAGCCTATATAGCATAAGCCACCATAGCTAAATTTGGTGAATTTGATGATTTGGGTCGGTTAAAAATCCAATCTTTATAATACCCTTTTGAAATCTCAGCTCAGATTTGTAAGGTACCCCTTCAATTTTGTTTTCTGTTTAGAGGGTTGTTTAGTTTTCTCTTTCTTGTTGTTGTTGTGATTGAATCTTGTTATCATCTGTTCTTTATGTTTATGGTGTTTCAGTTATTGCATTGTTGTTGCTGTTTTCTTATTAGTTGCTGTGTTTTCTGCATTGTCATTAGCACTTTTTTGTAACTACTTTGATTTGTTGTACTCGAGTTAAGGGTGTGTGGAAACAGCCTCTCCATTAGGCAGGGGGTAAGGTCTGACTCTCTACTTGTGTAATTGAATCTTGTTATCGTGTCTGATGTTTATTGTGTTTTGATAATTGCATTGTTGTTACTGTTTGTTTGTTGCCATTTTCTTTTTGCTCATATCTACTTTGATTTGGTTTATTTTGCTTCGTGGGATTTCATTGGATATGTTGTTGGATATGTTGTTGTTGTTGGAGTAATTGAATCTTGGGTTGATTAAGATATGTATGATGCACTTTTTAGGTGGATTGCTTACTGGCTTTTGGATTTTTGTGTTTTTTATACTGCATTGGGAGAATTGTTTAAAGTTATTTTGTTATCATTGTGTCAGCTTTTCTTTTAGCCTTACTTTTGGTCCTATCTTTGTTTTTGATGATGTGTGCTTATTTCTTAATGTACTTTAAACATTGGGTTGATAAAATATCATGATTTTCAGTGTATTTACATATACATATGCAGAGTTATATATCTGAAGTCTTTTTCAGTCTATAGGCTTTTCTTGCTGGTGTATAGGACATACTTATAGGGGTTAAGGTATGTGCATCAATTCCCCCCTTTGATTGCTTCTTCGTTAGATTTTGAAGTTGAAACTTGAAATTTTTCGAGCGGAGGTCCCAGAAACCCAAAACCTGGTCTTAGCTAGTGTTTAGGACATACTATGACCAAACACTAGCAAATTCTGTGTTAATGCTTCATCTTGTTTTGTGTTATCAGCTCTTAGTTATCAAGTTTTGAGCTGTCTTTTACTGAGTTGTGAACTGAAAGTTTTACTGGTTCTTGTTATTGGGAATTAGAATTTGGCTTCTTTGATTTGACCTGTAATTTTCGACAATTAGTTCGACAGTGAGGAACTTGTTCTGGACTTGAATTCCAAACAGGGAGTGGTTTTGGTCTCTTGGGTGCTGTTAATTGAGAGTTCAACTTGAGCTAGACTTCAGTTTGGAAAGGTAAATGCCATCGAGGTGTTGCTGTTTTTTAGTGGAAACTTCATTAAGGAATTCCTTGCTGTGATTGAAGAGTTCCCTTAGGCTGCTTATTTGTGGTTAGATATGGCACGAAATATTAAATTTTTGCTTTTAGATTTAAACTTAATGGAGTTGAGAATTGTTACAGCTCTCGAGTAGAAGGCTCATGCAGTTGATGTGAATGAAACTTTGCACTGCTGCTGCTGAAATCTATATTTGTAGTTGTTTCAGTTCAGACTTATTGGGACTGAACTAAGTTTGAGTCTGGTTTAAGTTTGGAAAGTATTTAGTTCCACTGTTGTTTATTTTGATTAACGATTCTGGAGCTGCGAGATTTTAATGAATCAATGCAGTATCTAAGTGCATCTGCTTTTCTCTGTGGAAGTTTAGTCACACATTGTACTTATGAAAATGTTCTTTGTTGTAGATTGCTCCAACTAGATGAATGCCATAAGTTGAGGACTGATGACACAAATACCTTCGTTATTAACTTTCTTTTTGTTGACATAGTCGATGAGATGTAGCATGTTCAGATTTTAATAGAACTCGGCAGAGGAATTTTCGAGTGCCTCCAGTCTATCACTTGTATTACTGATACAAGTCTACCGCTTGTCATTTGAAATATCTAGATCCATGTTTATAGTTGCTTCCTCGTAGCTAGTGACACTGATTAATTTGTTTGAGCTGTGCATTTGTTGTTCTGCTTGTCGTTTTATGTATAAAGACGGAGTACTACTAGCTCTATCTGGGCTTATCATGATTTAGAATGAGCCAATGACTCATGTGGGACACATTTAGATAGTTAGACTCATTTATCTTGTTACTGAGTGACAATTTTATAAATCTGTTTTTCCAGATGGATACGCAGAATCTGGAACATGGACAAGTAATTGAGGTGAGTGTTGACATAACAGGTCAAGAGAAGGGGACTAAAATCTGTGGTTCAGGACCGTGTGGATTCTCAGATGTTAACACCATGTCTAAGGATGCACAGGAGAGATC</genome_strand>
        <mrna_strand>ACCCAAGAAAGAATCTTCCCCAAAATCCATTGTGGCCGTCCCAATATATATACAGTTGGATTTTTGTTTTTTGCATCTCTCTGATTCCCTTTTATCTCTTCCCCCTTTTCCTCCCTTCTTATATAGGGTATATACCCCATATTATGCCTACAGCCTATATAGCATAAGCCACCATAGCTAAATTTGGTGAATTTGATGATTTGGGTCGGTTAAAAATCCAATCTTTATAATACCCTTTTGAAATCTCAGCTCAGATTTGTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATACGCAGAATCTGGAACATGGACAAGTAATTGAGGTGAGTGTTGACATAACAGGTCAAGAGAAGGGGACTAAAATCTGTGGTTCACGACCGTGTGGATTCTCAGATGTTAACACCATGTCTAAGGATGCACAGGAGAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="108717" stop="109611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109017" g_stop="109337" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109017" e_stop="109337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATATATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACGGAAACACAATATATACACTTTTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCATTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATATTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAA-CAAAACAGAA-TTATACACTTTTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="108717" stop="109611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109017" g_stop="109321" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109017" e_stop="109321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATATATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACGGAAACACAATATATACACTTTTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCATTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATATTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACA-AAACAGAATTATACACTTTTGT</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="108718" stop="109763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109018" g_stop="109463" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109018" e_stop="109463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACGGAAACACAATATATACACTTTTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCATTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATATTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACA-AAACAGAA-TTATACACTTTTGTGTATAAAGCGAGAGAGGCGAACGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACG-CTGGCAAATTTTAGCTAAGGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273199" ref_strand="+" ref_description="SGN-E273199 [cLEM-24-N24]">
      <seq>tctctattactcttctccaccaccatgcaccgtcgtcatcatgggctgctccgccaccctcctccctactcctcctcatctccgccgtcactccacctccgccttccctcctactccccacctcaaccgacgtaaactcctcttcctctccaccactctcacatttccctcaaccatctctacctccgacgctgccccaccgccgtcaccggacactactatcactgaacgagtcttcttagacttaagtatatgtcctaattacttcaaaaacaggaatctaggagatgatctatctaattgcgctgattctgaaccaattggtcgacttgttttaaggctttacggtaacctagttccgattactgtttcaaatttcaaagctatgtgtactggttcgtctggatcgacttataagggtactttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="119873" stop="120789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120173" g_stop="120601" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E273199" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120173" e_stop="120601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTATTACTCTTCTCCACCACCATGCACCGTCGTCATCATGGGCTGCTCCGCCACCCTCCTCCCTACTCCTCCTCATCTCCGCCGTCACTCCACCTCCGCCTTCCCTCCTACTCCCCACCTCAACCGACGTAAACTCCTCTTCCTCTCCACCACTCTCACATTTCCCTCAACCATCTCTACCTCCGTCGCTGCCCCACCGCCGTCACCGGACACTACTATCACTGAACGAGTCTTCTTAGACTTAAGTATATGTCCTAATTACTTCAAAAACAGGAATCTAGGAGATGATCTATCTAATTGCGCTGATTCTGAACCAATTGGTCGACTTGTTTTAGGGCTTTACGGTAACCTAGTTCCGATTACTGTTTCAAATTTCAAAGCTATGTGTACTGGTTCGTCTGGATCGACTTATAAGGGTACTTTGGT</genome_strand>
        <mrna_strand>TCTCTATTACTCTTCTCCACCACCATGCACCGTCGTCATCATGGGCTGCTCCGCCACCCTCCTCCCTACTCCTCCTCATCTCCGCCGTCACTCCACCTCCGCCTTCCCTCCTACTCCCCACCTCAACCGACGTAAACTCCTCTTCCTCTCCACCACTCTCACATTTCCCTCAACCATCTCTACCTCCGACGCTGCCCCACCGCCGTCACCGGACACTACTATCACTGAACGAGTCTTCTTAGACTTAAGTATATGTCCTAATTACTTCAAAAACAGGAATCTAGGAGATGATCTATCTAATTGCGCTGATTCTGAACCAATTGGTCGACTTGTTTTAAGGCTTTACGGTAACCTAGTTCCGATTACTGTTTCAAATTTCAAAGCTATGTGTACTGGTTCGTCTGGATCGACTTATAAGGGTACTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247300" ref_strand="+" ref_description="SGN-E247300 [cLEF-46-M6]">
      <seq>cgtcgtcatcatgggctgctccgccaccctcctccctactcctcctcatctccgccgtcactccacctccgccttccctcctactccccacctcaaccgacgtaaactcctcttcctctccaccactctcacatttccctcaaccatctctacctccgtcgctgccccaccgccgtcaccggacactactatcactgaacgagtcttcttagacttaagtatatgtcctaattacttcaaaaacaggaatctaggagatgatctatctaattgcgctgattctgaaccaattggtcgacttgttttagggctttacggtaacctagttccgattactgtttcaaatttcaaagctatgtgtactggttcgtctggatcgacttataagggtactttggtccagaagatatttccgggacagttttttatggcggggagacaggggagaagagataaaggagaagtgaaaccgccattgaagttaattaggaatgtggagtcaattgaatctaaagcttttcttttggaacattctagagctggagttgtttcattgcctttagctgagaatgatgatgatgatgatcttaagctgaatccaaattatcataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="119903" stop="120789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120203" g_stop="120789" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E247300" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120203" e_stop="120789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCGTCATCATGGGCTGCTCCGCCACCCTCCTCCCTACTCCTCCTCATCTCCGCCGTCACTCCACCTCCGCCTTCCCTCCTACTCCCCACCTCAACCGACGTAAACTCCTCTTCCTCTCCACCACTCTCACATTTCCCTCAACCATCTCTACCTCCGTCGCTGCCCCACCGCCGTCACCGGACACTACTATCACTGAACGAGTCTTCTTAGACTTAAGTATATGTCCTAATTACTTCAAAAACAGGAATCTAGGAGATGATCTATCTAATTGCGCTGATTCTGAACCAATTGGTCGACTTGTTTTAGGGCTTTACGGTAACCTAGTTCCGATTACTGTTTCAAATTTCAAAGCTATGTGTACTGGTTCGTCTGGATCGACTTATAAGGGTACTTTGGTCCAGAAGATATTTCCGGGACAGTTTTTTATGGCGGGGAGACAGGGGAGAAGAGATAAAGGAGAAGTGAAACCGCCATTGAAGTTAATTAGGAATGTGGAGTCAATTGAATCTAAAGCTTTTCTTTTGGAACATTCTAGAGCTGGAGTTGTTTCATTGCCTTTAGCTGAGAATGATGATGATGATGATC</genome_strand>
        <mrna_strand>CGTCGTCATCATGGGCTGCTCCGCCACCCTCCTCCCTACTCCTCCTCATCTCCGCCGTCACTCCACCTCCGCCTTCCCTCCTACTCCCCACCTCAACCGACGTAAACTCCTCTTCCTCTCCACCACTCTCACATTTCCCTCAACCATCTCTACCTCCGTCGCTGCCCCACCGCCGTCACCGGACACTACTATCACTGAACGAGTCTTCTTAGACTTAAGTATATGTCCTAATTACTTCAAAAACAGGAATCTAGGAGATGATCTATCTAATTGCGCTGATTCTGAACCAATTGGTCGACTTGTTTTAGGGCTTTACGGTAACCTAGTTCCGATTACTGTTTCAAATTTCAAAGCTATGTGTACTGGTTCGTCTGGATCGACTTATAAGGGTACTTTGGTCCAGAAGATATTTCCGGGACAGTTTTTTATGGCGGGGAGACAGGGGAGAAGAGATAAAGGAGAAGTGAAACCGCCATTGAAGTTAATTAGGAATGTGGAGTCAATTGAATCTAAAGCTTTTCTTTTGGAACATTCTAGAGCTGGAGTTGTTTCATTGCCTTTAGCTGAGAATGATGATGATGATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397167" ref_strand="+" ref_description="SGN-E397167 [TUS-45-I17]">
      <seq>gttttagggctttacggtaacctagttccgattactgtttcaaatttcaaagctatgtgtactggttcgtctggatcgacttataagggtactttggtccagaagatatttccgggacagttttttatggcggggagacaggggagaaaagataaaggagaagtgaaaccgccattgaagttaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0097J03-WGw74/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07SLm0097J03.1" temp_strand="+" temp_description="C07SLm0097J03.1  AC236770.1 htgs_phase:2 submitted_to_sgn_as:gi|238909048|gb|AC236770.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0097J03, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="120204" stop="120789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120504" g_stop="120690" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0097J03.1" gen_strand="+" ref_id="SGN-E397167" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>187</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0097J03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120504" e_stop="120690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTAGGGCTTTACGGTAACCTAGTTCCGATTACTGTTTCAAATTTCAAAGCTATGTGTACTGGTTCGTCTGGATCGACTTATAAGGGTACTTTGGTCCAGAAGATATTTCCGGGACAGTTTTTTATGGCGGGGAGACAGGGGAGAAGAGATAAAGGAGAAGTGAAACCGCCATTGAAGTTAATTA</genome_strand>
        <mrna_strand>GTTTTAGGGCTTTACGGTAACCTAGTTCCGATTACTGTTTCAAATTTCAAAGCTATGTGTACTGGTTCGTCTGGATCGACTTATAAGGGTACTTTGGTCCAGAAGATATTTCCGGGACAGTTTTTTATGGCGGGGAGACAGGGGAGAAAAGATAAAGGAGAAGTGAAACCGCCATTGAAGTTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>110</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4279" PGL_stop="5026"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4279" e_stop="5026"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="4279" e_stop="5026" e_length="748"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4279" stop="4950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4297" stop="5026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4297" stop="4854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4297" stop="4850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4298" stop="4980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4298" stop="4768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4298" stop="4611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4302" stop="5025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4304" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274052" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACCTAATTTCAACTCACCAATTTCACAACAACAAAAAAAAAACCCTACCTTTTTCTTGTTCTTGTTCTTGTTCTTGTTCTTCTTGATAATCGTCGTCTTATCCTTCTTCGAAATTGAAATTTTTAGTCATGAGTTATGAACCAAACACGGCCTTAAACCTAAGTCTATCAAGAAATGATCTTTTATTTGACCAATCATCATCATCATCATCATCAACCCCTTTAAGCCCGGTTGAGCCACGTGTTTTTTCTTGCAATTATTGTAGAAGAAAGTTTTATAGTTCACAAGCTCTAGGAGGACACCAGAATGCTCATAAACTCGAAAGAACCCTAGCCAAGAAGAGTAGGGAGTTGAGTTCAACCCTACGCGGGCCTCATTCTAGTTGGTCAAATCATAGTAATAGTAATAATAATAGTAATAGTAATAATCATTGCTCGTTGAGCCCTAGTGGTCCGAGCCATACTAGTCATGGTCATGGTCATGGTGCTAGGTTTGTTACAAATAATGATTTAATAAGCTATGGAAGAAGAGAGATGATGATGAGTTATGAATCAATGAAAAATGGTCATGAGAGTGTTCAAGAGGATTTTGGACATCTTGATTTGTCATTAAGGCTTTAATCATCATCACTTTTTTTTTTAAAAAAAAAATAATTTTGGTTATTTGTTTTTTACTTCAAGATATTGTTGTAATTTTAACCTATTTTGATGTGGTTAATTAATTAAAGATTCTACTCAAGGGCGATT</gDNA_template>
            <first_frame> K  P  N  F  N  S  P  I  S  Q  Q  Q  K  K  N  P  T  F  F  L  F  L  F  L  F  L  F  F  L  I  I  V  V  L  S  F  F  E  I  E  I  F  S  H  E  L  *  T  K  H  G  L  K  P  K  S  I  K  K  *  S  F  I  *  P  I  I  I  I  I  I  I  N  P  F  K  P  G  *  A  T  C  F  F  L  Q  L  L  *  K  K  V  L  *  F  T  S  S  R  R  T  P  E  C  S  *  T  R  K  N  P  S  Q  E  E  *  G  V  E  F  N  P  T  R  A  S  F  *  L  V  K  S  *  *  *  *  *  *  *  *  *  *  *  S  L  L  V  E  P  *  W  S  E  P  Y  *  S  W  S  W  S  W  C  *  V  C  Y  K  *  *  F  N  K  L  W  K  K  R  D  D  D  E  L  *  I  N  E  K  W  S  *  E  C  S  R  G  F  W  T  S  *  F  V  I  K  A  L  I  I  I  T  F  F  F  K  K  K  I  I  L  V  I  C  F  L  L  Q  D  I  V  V  I  L  T  Y  F  D  V  V  N  *  L  K  I  L  L  K  G  D  </first_frame>
            <second_frame>  N  L  I  S  T  H  Q  F  H  N  N  K  K  K  T  L  P  F  S  C  S  C  S  C  S  C  S  S  *  *  S  S  S  Y  P  S  S  K  L  K  F  L  V  M  S  Y  E  P  N  T  A  L  N  L  S  L  S  R  N  D  L  L  F  D  Q  S  S  S  S  S  S  S  T  P  L  S  P  V  E  P  R  V  F  S  C  N  Y  C  R  R  K  F  Y  S  S  Q  A  L  G  G  H  Q  N  A  H  K  L  E  R  T  L  A  K  K  S  R  E  L  S  S  T  L  R  G  P  H  S  S  W  S  N  H  S  N  S  N  N  N  S  N  S  N  N  H  C  S  L  S  P  S  G  P  S  H  T  S  H  G  H  G  H  G  A  R  F  V  T  N  N  D  L  I  S  Y  G  R  R  E  M  M  M  S  Y  E  S  M  K  N  G  H  E  S  V  Q  E  D  F  G  H  L  D  L  S  L  R  L  *  S  S  S  L  F  F  L  K  K  K  *  F  W  L  F  V  F  Y  F  K  I  L  L  *  F  *  P  I  L  M  W  L  I  N  *  R  F  Y  S  R  A  I </second_frame>
            <third_frame>   T  *  F  Q  L  T  N  F  T  T  T  K  K  K  P  Y  L  F  L  V  L  V  L  V  L  V  L  L  D  N  R  R  L  I  L  L  R  N  *  N  F  *  S  *  V  M  N  Q  T  R  P  *  T  *  V  Y  Q  E  M  I  F  Y  L  T  N  H  H  H  H  H  H  Q  P  L  *  A  R  L  S  H  V  F  F  L  A  I  I  V  E  E  S  F  I  V  H  K  L  *  E  D  T  R  M  L  I  N  S  K  E  P  *  P  R  R  V  G  S  *  V  Q  P  Y  A  G  L  I  L  V  G  Q  I  I  V  I  V  I  I  I  V  I  V  I  I  I  A  R  *  A  L  V  V  R  A  I  L  V  M  V  M  V  M  V  L  G  L  L  Q  I  M  I  *  *  A  M  E  E  E  R  *  *  *  V  M  N  Q  *  K  M  V  M  R  V  F  K  R  I  L  D  I  L  I  C  H  *  G  F  N  H  H  H  F  F  F  *  K  K  N  N  F  G  Y  L  F  F  T  S  R  Y  C  C  N  F  N  L  F  *  C  G  *  L  I  K  D  S  T  Q  G  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4370" stop="4900"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSYPSSKLKFLVMSYEPNTALNLSLSRNDLLFDQSSSSSSSTPLSPVEPRVFSCNYCRRKFYSSQALGGHQNAHKLERTLAKKSRELSSTLRGPHSSWSNHSNSNNNSNSNNHCSLSPSGPSHTSHGHGHGARFVTNNDLISYGRREMMMSYESMKNGHESVQEDFGHLDLSLRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="9349" PGL_stop="11444"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9349" e_stop="11380"/>
            <exon e_start="11434" e_stop="11444"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="0.995"/>
          <exon-only e_score="0.455"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="9349" e_stop="11380" e_length="2032"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="11381" i_stop="11433" i_length="53"/>
          </intron>
          <exon e_serial="2" e_score="0.455">
            <gDNA_exon_boundary e_start="11434" e_stop="11444" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9349" stop="9991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9361" stop="9850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9363" stop="9979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9373" stop="9961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9375" stop="10008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9394" stop="9961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9406" stop="10041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9522" stop="10035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9563" stop="10093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9619" stop="10122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9719" stop="10106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9902" stop="10389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9905" stop="10478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9905" stop="10447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9905" stop="10406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9905" stop="10324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10408" stop="10685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10410" stop="10788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10457" stop="11004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10565" stop="11380"/>
              <exon start="11434" stop="11444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10595" stop="10894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10632" stop="11018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10633" stop="10825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10654" stop="11315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10858" stop="11307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269542" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATTCATCTCAAAAAAATCATCAATCTTGAGAAAAAAAATGACATTTATAGACTTATTATTACTCTTTTCACTTATTCCTTTTTTCTTAATTTTCTTCCTCAAATTCCAAAAAGCAAGAAAAAACCCCATTTCATCAAATACAAAAATACCAAAATCCTATCCTATTATTGGTTCTTATTTTTCCTTATTAGCAAATCAAGAACAAAGAATCCAATGGTTATCTGATATTATCCTTAGCACCCCTAAACTTACTTTTACTCTAATTCGACCCCTCAATTTCCACACAATTATCACTGCTAATCCATCTAACGTTCAGCACATTCTCAAAACCAATTTCTCTGTTTATCAAAAAGGCCAGAACTCAAACAACACTCTTGCTGATTTCCTCAGTAATGGCATTTTCAACGTCGATGGCGATATATGGAAGTATCAACGACAAGTTGCTAGCCACGAATTCAATACTAGATCACTACGAAAATTCGTTGAATCTGTAGTTGATGTCGAGGTATCTGAACGTCTAGTTCCCATACTCGCGAACGCTGCTGCTGAGAAAAATGTTGTCGATCTACAAGACGTGTTGCAAAGGTTCGCATTTGATAACATTTGTAAAATTGCATTTGGTTATGATCCAAAGTATTTGTTACCTAACTTACCTGAAGCAGAATTCGCGGTAGCATTTGAAGATTGTGTTCGATTGAGCAGTGAGAGATTTGCTGTCCCTTTTCCGTTGATTTGGAAAATGAAACGCGCTTTTGGTATTGGTTCTGAGAAGAAATTACGAATTGCAGTTGGAGAAGTGCGTGAGTTTGCGAAGAGAATAGTGAGGGAGAAGTTGAATGAGAGATCGTCGTTGGATTCAGCTGATTTGTTGTCGAGATTTTTGAGTACAGGGCACTCTGATGAAGATTTCGTTGTTGATATAGTGATAAGTTTTATTTTAGCAGGACGCGATACGACTTCAGCTGCGTTGACATGGTTTTTCTGGTTGATTTCGAAGAATGCAGATGTGGAATCTGAAATATTGAGAGAAATTGGGGGAAAAGAAGAGGATGTTTCAATGCGATACGACGAGGTGAAGAACATGATGTATACTCACGCCTCGCTCTGTGAGAGCATGAGATTTTATCCTCCGGTACCAATGGATTCGAAAGAAGTCATGAAAGATGATGTATTGCCCGATGGGACATTTGTGAAGAAGGGGATGAGGGTTACTTATCATCCTTACGCAATGGGAAGATCGGAGGAGATTTGGGGAAAAGACTGGGCGGAGTTCAAGCCAGAGAGATGGTTGAATAAGGATGAAATGACGGGGAATTGGATGTTTGTGGGAAAAGATCCATTCGCTTATCCTGTTTTTCAAGCAGGACCGCGAGTTTGCTTAGGGAAAGAAATGGCGTTTTTGCAAATGAAGAGGGTGGTGGCTGGTGTTTTGCAGCGGTTTAAGGTGGTTCCGGTGGTGGAGAAAGGGGTGGAGCCGATGTTTATATCGTATTTGACGGCCAAGATGAAAGGAGGTTTCCCAGTTACTATCGAAGAAAGGATGTAGTTGTTGGGTATGTAGCAAGAATTGATGGGAAATAGAAGGAAAGAGAGTAATTTGAAAAGTTGAGAACTTCAAAATCAAACTTACAGATATTAGAGTGGAATAATTTCCTTAAGAGGACACTGTGAGTTGAGTGGACTTGATCTTCTTCCAAACTAAAAGATTGTATCAGTTTCTGGTACGTTTGTTTTAAATATTTTCTAAAATAAATTTCTGTTCATCTTGCTTACTGATTCGACAAATTTCAATTACTTCGTGTTTCTGAATAATTTATTACAATCAGTAATTTTGGTTTTAATTACACAATTTGGTAAACAGTAGTAGTATTATCATGGACACAAGTTGAAAAAACAAGTTTATTGTATGTGTTCTTAGGTTATTTGCTTTTTTTATAATATTGATTTGTATTAATTATATATGTAGTCTCTGATCTATAATTGTTTGATCAACAAGGTTCTCTTAGTAATATTTGTTAGTGTTTGCCCT : CATTATAGGAA</gDNA_template>
            <first_frame> Q  I  H  L  K  K  I  I  N  L  E  K  K  N  D  I  Y  R  L  I  I  T  L  F  T  Y  S  F  F  L  N  F  L  P  Q  I  P  K  S  K  K  K  P  H  F  I  K  Y  K  N  T  K  I  L  S  Y  Y  W  F  L  F  F  L  I  S  K  S  R  T  K  N  P  M  V  I  *  Y  Y  P  *  H  P  *  T  Y  F  Y  S  N  S  T  P  Q  F  P  H  N  Y  H  C  *  S  I  *  R  S  A  H  S  Q  N  Q  F  L  C  L  S  K  R  P  E  L  K  Q  H  S  C  *  F  P  Q  *  W  H  F  Q  R  R  W  R  Y  M  E  V  S  T  T  S  C  *  P  R  I  Q  Y  *  I  T  T  K  I  R  *  I  C  S  *  C  R  G  I  *  T  S  S  S  H  T  R  E  R  C  C  *  E  K  C  C  R  S  T  R  R  V  A  K  V  R  I  *  *  H  L  *  N  C  I  W  L  *  S  K  V  F  V  T  *  L  T  *  S  R  I  R  G  S  I  *  R  L  C  S  I  E  Q  *  E  I  C  C  P  F  S  V  D  L  E  N  E  T  R  F  W  Y  W  F  *  E  E  I  T  N  C  S  W  R  S  A  *  V  C  E  E  N  S  E  G  E  V  E  *  E  I  V  V  G  F  S  *  F  V  V  E  I  F  E  Y  R  A  L  *  *  R  F  R  C  *  Y  S  D  K  F  Y  F  S  R  T  R  Y  D  F  S  C  V  D  M  V  F  L  V  D  F  E  E  C  R  C  G  I  *  N  I  E  R  N  W  G  K  R  R  G  C  F  N  A  I  R  R  G  E  E  H  D  V  Y  S  R  L  A  L  *  E  H  E  I  L  S  S  G  T  N  G  F  E  R  S  H  E  R  *  C  I  A  R  W  D  I  C  E  E  G  D  E  G  Y  L  S  S  L  R  N  G  K  I  G  G  D  L  G  K  R  L  G  G  V  Q  A  R  E  M  V  E  *  G  *  N  D  G  E  L  D  V  C  G  K  R  S  I  R  L  S  C  F  S  S  R  T  A  S  L  L  R  E  R  N  G  V  F  A  N  E  E  G  G  G  W  C  F  A  A  V  *  G  G  S  G  G  G  E  R  G  G  A  D  V  Y  I  V  F  D  G  Q  D  E  R  R  F  P  S  Y  Y  R  R  K  D  V  V  V  G  Y  V  A  R  I  D  G  K  *  K  E  R  E  *  F  E  K  L  R  T  S  K  S  N  L  Q  I  L  E  W  N  N  F  L  K  R  T  L  *  V  E  W  T  *  S  S  S  K  L  K  D  C  I  S  F  W  Y  V  C  F  K  Y  F  L  K  *  I  S  V  H  L  A  Y  *  F  D  K  F  Q  L  L  R  V  S  E  *  F  I  T  I  S  N  F  G  F  N  Y  T  I  W  *  T  V  V  V  L  S  W  T  Q  V  E  K  T  S  L  L  Y  V  F  L  G  Y  L  L  F  L  *  Y  *  F  V  L  I  I  Y  V  V  S  D  L  *  L  F  D  Q  Q  G  S  L  S  N  I  C  *  C  L  P   : S  L  *  E </first_frame>
            <second_frame>  K  F  I  S  K  K  S  S  I  L  R  K  K  M  T  F  I  D  L  L  L  L  F  S  L  I  P  F  F  L  I  F  F  L  K  F  Q  K  A  R  K  N  P  I  S  S  N  T  K  I  P  K  S  Y  P  I  I  G  S  Y  F  S  L  L  A  N  Q  E  Q  R  I  Q  W  L  S  D  I  I  L  S  T  P  K  L  T  F  T  L  I  R  P  L  N  F  H  T  I  I  T  A  N  P  S  N  V  Q  H  I  L  K  T  N  F  S  V  Y  Q  K  G  Q  N  S  N  N  T  L  A  D  F  L  S  N  G  I  F  N  V  D  G  D  I  W  K  Y  Q  R  Q  V  A  S  H  E  F  N  T  R  S  L  R  K  F  V  E  S  V  V  D  V  E  V  S  E  R  L  V  P  I  L  A  N  A  A  A  E  K  N  V  V  D  L  Q  D  V  L  Q  R  F  A  F  D  N  I  C  K  I  A  F  G  Y  D  P  K  Y  L  L  P  N  L  P  E  A  E  F  A  V  A  F  E  D  C  V  R  L  S  S  E  R  F  A  V  P  F  P  L  I  W  K  M  K  R  A  F  G  I  G  S  E  K  K  L  R  I  A  V  G  E  V  R  E  F  A  K  R  I  V  R  E  K  L  N  E  R  S  S  L  D  S  A  D  L  L  S  R  F  L  S  T  G  H  S  D  E  D  F  V  V  D  I  V  I  S  F  I  L  A  G  R  D  T  T  S  A  A  L  T  W  F  F  W  L  I  S  K  N  A  D  V  E  S  E  I  L  R  E  I  G  G  K  E  E  D  V  S  M  R  Y  D  E  V  K  N  M  M  Y  T  H  A  S  L  C  E  S  M  R  F  Y  P  P  V  P  M  D  S  K  E  V  M  K  D  D  V  L  P  D  G  T  F  V  K  K  G  M  R  V  T  Y  H  P  Y  A  M  G  R  S  E  E  I  W  G  K  D  W  A  E  F  K  P  E  R  W  L  N  K  D  E  M  T  G  N  W  M  F  V  G  K  D  P  F  A  Y  P  V  F  Q  A  G  P  R  V  C  L  G  K  E  M  A  F  L  Q  M  K  R  V  V  A  G  V  L  Q  R  F  K  V  V  P  V  V  E  K  G  V  E  P  M  F  I  S  Y  L  T  A  K  M  K  G  G  F  P  V  T  I  E  E  R  M  *  L  L  G  M  *  Q  E  L  M  G  N  R  R  K  E  S  N  L  K  S  *  E  L  Q  N  Q  T  Y  R  Y  *  S  G  I  I  S  L  R  G  H  C  E  L  S  G  L  D  L  L  P  N  *  K  I  V  S  V  S  G  T  F  V  L  N  I  F  *  N  K  F  L  F  I  L  L  T  D  S  T  N  F  N  Y  F  V  F  L  N  N  L  L  Q  S  V  I  L  V  L  I  T  Q  F  G  K  Q  *  *  Y  Y  H  G  H  K  L  K  K  Q  V  Y  C  M  C  S  *  V  I  C  F  F  Y  N  I  D  L  Y  *  L  Y  M  *  S  L  I  Y  N  C  L  I  N  K  V  L  L  V  I  F  V  S  V  C  P  :  H  Y  R   </second_frame>
            <third_frame>   N  S  S  Q  K  N  H  Q  S  *  E  K  K  *  H  L  *  T  Y  Y  Y  S  F  H  L  F  L  F  S  *  F  S  S  S  N  S  K  K  Q  E  K  T  P  F  H  Q  I  Q  K  Y  Q  N  P  I  L  L  L  V  L  I  F  P  Y  *  Q  I  K  N  K  E  S  N  G  Y  L  I  L  S  L  A  P  L  N  L  L  L  L  *  F  D  P  S  I  S  T  Q  L  S  L  L  I  H  L  T  F  S  T  F  S  K  P  I  S  L  F  I  K  K  A  R  T  Q  T  T  L  L  L  I  S  S  V  M  A  F  S  T  S  M  A  I  Y  G  S  I  N  D  K  L  L  A  T  N  S  I  L  D  H  Y  E  N  S  L  N  L  *  L  M  S  R  Y  L  N  V  *  F  P  Y  S  R  T  L  L  L  R  K  M  L  S  I  Y  K  T  C  C  K  G  S  H  L  I  T  F  V  K  L  H  L  V  M  I  Q  S  I  C  Y  L  T  Y  L  K  Q  N  S  R  *  H  L  K  I  V  F  D  *  A  V  R  D  L  L  S  L  F  R  *  F  G  K  *  N  A  L  L  V  L  V  L  R  R  N  Y  E  L  Q  L  E  K  C  V  S  L  R  R  E  *  *  G  R  S  *  M  R  D  R  R  W  I  Q  L  I  C  C  R  D  F  *  V  Q  G  T  L  M  K  I  S  L  L  I  *  *  *  V  L  F  *  Q  D  A  I  R  L  Q  L  R  *  H  G  F  S  G  *  F  R  R  M  Q  M  W  N  L  K  Y  *  E  K  L  G  E  K  K  R  M  F  Q  C  D  T  T  R  *  R  T  *  C  I  L  T  P  R  S  V  R  A  *  D  F  I  L  R  Y  Q  W  I  R  K  K  S  *  K  M  M  Y  C  P  M  G  H  L  *  R  R  G  *  G  L  L  I  I  L  T  Q  W  E  D  R  R  R  F  G  E  K  T  G  R  S  S  S  Q  R  D  G  *  I  R  M  K  *  R  G  I  G  C  L  W  E  K  I  H  S  L  I  L  F  F  K  Q  D  R  E  F  A  *  G  K  K  W  R  F  C  K  *  R  G  W  W  L  V  F  C  S  G  L  R  W  F  R  W  W  R  K  G  W  S  R  C  L  Y  R  I  *  R  P  R  *  K  E  V  S  Q  L  L  S  K  K  G  C  S  C  W  V  C  S  K  N  *  W  E  I  E  G  K  R  V  I  *  K  V  E  N  F  K  I  K  L  T  D  I  R  V  E  *  F  P  *  E  D  T  V  S  *  V  D  L  I  F  F  Q  T  K  R  L  Y  Q  F  L  V  R  L  F  *  I  F  S  K  I  N  F  C  S  S  C  L  L  I  R  Q  I  S  I  T  S  C  F  *  I  I  Y  Y  N  Q  *  F  W  F  *  L  H  N  L  V  N  S  S  S  I  I  M  D  T  S  *  K  N  K  F  I  V  C  V  L  R  L  F  A  F  F  I  I  L  I  C  I  N  Y  I  C  S  L  *  S  I  I  V  *  S  T  R  F  S  *  *  Y  L  L  V  F  A  L :   I  I  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9350" stop="10897"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1545</number_coding_nucleotides>
                  <number_encoded_amino_acids>515</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFISKKSSILRKKMTFIDLLLLFSLIPFFLIFFLKFQKARKNPISSNTKIPKSYPIIGSYFSLLANQEQRIQWLSDIILSTPKLTFTLIRPLNFHTIITANPSNVQHILKTNFSVYQKGQNSNNTLADFLSNGIFNVDGDIWKYQRQVASHEFNTRSLRKFVESVVDVEVSERLVPILANAAAEKNVVDLQDVLQRFAFDNICKIAFGYDPKYLLPNLPEAEFAVAFEDCVRLSSERFAVPFPLIWKMKRAFGIGSEKKLRIAVGEVREFAKRIVREKLNERSSLDSADLLSRFLSTGHSDEDFVVDIVISFILAGRDTTSAALTWFFWLISKNADVESEILREIGGKEEDVSMRYDEVKNMMYTHASLCESMRFYPPVPMDSKEVMKDDVLPDGTFVKKGMRVTYHPYAMGRSEEIWGKDWAEFKPERWLNKDEMTGNWMFVGKDPFAYPVFQAGPRVCLGKEMAFLQMKRVVAGVLQRFKVVPVVEKGVEPMFISYLTAKMKGGFPVTIEERM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="11117" PGL_stop="10345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11117" e_stop="10345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="11117" e_stop="10345" e_length="773"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11117" stop="10345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11117" stop="10381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11117" stop="10381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11117" stop="10384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11117" stop="10793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11112" stop="10851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257589" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATGAACAGAAATTTATTTTAGAAAATATTTAAAACAAACGTACCAGAAACTGATACAATCTTTTAGTTTGGAAGAAGATCAAGTCCACTCAACTCACAGTGTCCTCTTAAGGAAATTATTCCACTCTAATATCTGTAAGTTTGATTTTGAAGTTCTCAACTTTTCAAATTACTCTCTTTCCTTCTATTTCCCATCAATTCTTGCTACATACCCAACAACTACATCCTTTCTTCGATAGTAACTGGGAAACCTCCTTTCATCTTGGCCGTCAAATACGATATAAACATCGGCTCCACCCCTTTCTCCACCACCGGAACCACCTTAAACCGCTGCAAAACACCAGCCACCACCCTCTTCATTTGCAAAAACGCCATTTCTTTCCCTAAGCAAACTCGCGGTCCTGCTTGAAAAACAGGATAAGCGAATGGATCTTTTCCCACAAACATCCAATTCCCCGTCATTTCATCCTTATTCAACCATCTCTCTGGCTTGAACTCCGCCCAGTCTTTTCCCCAAATCTCCTCCGATCTTCCCATTGCGTAAGGATGATAAGTAACCCTCATCCCCTTCTTCACAAATGTCCCATCGGGCAATACATCATCTTTCATGACTTCTTTCGAATCCATTGGTACCGGAGGATAAAATCTCATGCTCTCACAGAGCGAGGCGTGAGTATACATCATGTTCTTCACCTCGTCGTATCGCATTGAAACATCCTCTTCTTTTCCCCCAATTTCTCTCAATATTTCAGATTCCACATCTGCATTCTTC</gDNA_template>
            <first_frame> R  *  T  E  I  Y  F  R  K  Y  L  K  Q  T  Y  Q  K  L  I  Q  S  F  S  L  E  E  D  Q  V  H  S  T  H  S  V  L  L  R  K  L  F  H  S  N  I  C  K  F  D  F  E  V  L  N  F  S  N  Y  S  L  S  F  Y  F  P  S  I  L  A  T  Y  P  T  T  T  S  F  L  R  *  *  L  G  N  L  L  S  S  W  P  S  N  T  I  *  T  S  A  P  P  L  S  P  P  P  E  P  P  *  T  A  A  K  H  Q  P  P  P  S  S  F  A  K  T  P  F  L  S  L  S  K  L  A  V  L  L  E  K  Q  D  K  R  M  D  L  F  P  Q  T  S  N  S  P  S  F  H  P  Y  S  T  I  S  L  A  *  T  P  P  S  L  F  P  K  S  P  P  I  F  P  L  R  K  D  D  K  *  P  S  S  P  S  S  Q  M  S  H  R  A  I  H  H  L  S  *  L  L  S  N  P  L  V  P  E  D  K  I  S  C  S  H  R  A  R  R  E  Y  T  S  C  S  S  P  R  R  I  A  L  K  H  P  L  L  F  P  Q  F  L  S  I  F  Q  I  P  H  L  H  S   </first_frame>
            <second_frame>  D  E  Q  K  F  I  L  E  N  I  *  N  K  R  T  R  N  *  Y  N  L  L  V  W  K  K  I  K  S  T  Q  L  T  V  S  S  *  G  N  Y  S  T  L  I  S  V  S  L  I  L  K  F  S  T  F  Q  I  T  L  F  P  S  I  S  H  Q  F  L  L  H  T  Q  Q  L  H  P  F  F  D  S  N  W  E  T  S  F  H  L  G  R  Q  I  R  Y  K  H  R  L  H  P  F  L  H  H  R  N  H  L  K  P  L  Q  N  T  S  H  H  P  L  H  L  Q  K  R  H  F  F  P  *  A  N  S  R  S  C  L  K  N  R  I  S  E  W  I  F  S  H  K  H  P  I  P  R  H  F  I  L  I  Q  P  S  L  W  L  E  L  R  P  V  F  S  P  N  L  L  R  S  S  H  C  V  R  M  I  S  N  P  H  P  L  L  H  K  C  P  I  G  Q  Y  I  I  F  H  D  F  F  R  I  H  W  Y  R  R  I  K  S  H  A  L  T  E  R  G  V  S  I  H  H  V  L  H  L  V  V  S  H  *  N  I  L  F  F  S  P  N  F  S  Q  Y  F  R  F  H  I  C  I  L  </second_frame>
            <third_frame>   M  N  R  N  L  F  *  K  I  F  K  T  N  V  P  E  T  D  T  I  F  *  F  G  R  R  S  S  P  L  N  S  Q  C  P  L  K  E  I  I  P  L  *  Y  L  *  V  *  F  *  S  S  Q  L  F  K  L  L  S  F  L  L  F  P  I  N  S  C  Y  I  P  N  N  Y  I  L  S  S  I  V  T  G  K  P  P  F  I  L  A  V  K  Y  D  I  N  I  G  S  T  P  F  S  T  T  G  T  T  L  N  R  C  K  T  P  A  T  T  L  F  I  C  K  N  A  I  S  F  P  K  Q  T  R  G  P  A  *  K  T  G  *  A  N  G  S  F  P  T  N  I  Q  F  P  V  I  S  S  L  F  N  H  L  S  G  L  N  S  A  Q  S  F  P  Q  I  S  S  D  L  P  I  A  *  G  *  *  V  T  L  I  P  F  F  T  N  V  P  S  G  N  T  S  S  F  M  T  S  F  E  S  I  G  T  G  G  *  N  L  M  L  S  Q  S  E  A  *  V  Y  I  M  F  F  T  S  S  Y  R  I  E  T  S  S  S  F  P  P  I  S  L  N  I  S  D  S  T  S  A  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10729" stop="10406"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANSRSCLKNRISEWIFSHKHPIPRHFILIQPSLWLELRPVFSPNLLRSSHCVRMISNPHPLLHKCPIGQYIIFHDFFRIHWYRRIKSHALTERGVSIHHVLHLVVSH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11005" stop="10730"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNYSTLISVSLILKFSTFQITLFPSISHQFLLHTQQLHPFFDSNWETSFHLGRQIRYKHRLHPFLHHRNHLKPLQNTSHHPLHLQKRHFFP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10965" stop="10708"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSQLFKLLSFLLFPINSCYIPNNYILSSIVTGKPPFILAVKYDINIGSTPFSTTGTTLNRCKTPATTLFICKNAISFPKQTRGPA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11111" stop="10878"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEIYFRKYLKQTYQKLIQSFSLEEDQVHSTHSVLLRKLFHSNICKFDFEVLNFSNYSLSFYFPSILATYPTTTSFLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="26918" PGL_stop="24698"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26918" e_stop="26631"/>
            <exon e_start="25640" e_stop="25489"/>
            <exon e_start="25401" e_stop="25193"/>
            <exon e_start="25109" e_stop="25016"/>
            <exon e_start="24754" e_stop="24698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.450" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.570" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.942" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26918" e_stop="26631" e_length="288"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="26630" i_stop="25641" i_length="990"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25640" e_stop="25489" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="0.450" acc_prob="0.937">
            <gDNA_intron_boundary i_start="25488" i_stop="25402" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25401" e_stop="25193" e_length="209"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.570">
            <gDNA_intron_boundary i_start="25192" i_stop="25110" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25109" e_stop="25016" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.942">
            <gDNA_intron_boundary i_start="25015" i_stop="24755" i_length="261"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24754" e_stop="24698" e_length="57"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26918" stop="26631"/>
              <exon start="25640" stop="25489"/>
              <exon start="25401" stop="25193"/>
              <exon start="25109" stop="25016"/>
              <exon start="24754" stop="24698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26917" stop="26631"/>
              <exon start="25640" stop="25489"/>
              <exon start="25401" stop="25193"/>
              <exon start="25109" stop="25036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26917" stop="26631"/>
              <exon start="25640" stop="25489"/>
              <exon start="25401" stop="25361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26713" stop="26631"/>
              <exon start="25640" stop="25489"/>
              <exon start="25401" stop="25193"/>
              <exon start="25109" stop="25063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26710" stop="26631"/>
              <exon start="25640" stop="25489"/>
              <exon start="25401" stop="25193"/>
              <exon start="25109" stop="25016"/>
              <exon start="24754" stop="24721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGCCCGTGATTTTCTCCGACAATACTATACGCTTTGTCACTTGTACCTAAATCTTTTAACTCAAATCACTCCGTTTAACCCGACAAAACCCTCTTTCCTTAAAAAAAAATCAGTACTAATTACTCATTAATCTTTGAGATTTGCATTTACTTTCATTTATTTTGAGTGAATGGTAGCTAGTTGATACAGAAATTAGTTGGATTGAGAGAAAAAAATGATGGGTTTTTTGATGAGAAAAGATGTGAGGAAGCTACTCAAGAGGAAGGATAGTGATGCTGGTGAAAAAG : GAAGAGCATTGGAGGAGGCACGAGCGTCCTTGTTTAGCAAATTACGAGCATTTGGAGGTGGGAAGCGCCAACAAACTACCTTATGGGGGCCTACTGTTGCATTGACATTCAATTTTTTTGTTTCTGTTAGTATTATCTTGATGAACAAATTG : GTTCTTGTTACAGTCGGATTTAACTATCCAATTTTCCTCTCTTTCCTGCATTATGTCTGTAGCTGGTTGATAATGGCTATTCTTAATGCTCTCTCCATCCTTTCCTTGTCTACACCATCAAAATCGACAAAATATTCATCGTTGTTGTCTCTTGGTATAGTTATGTCACTTTCTACTGGGCTTGCAAATGTGAGCTTGAAGTATAATAG : TGTAGGATTTTACCAGATGGCAAAGATTGCAGTAACACCAGCTATCGTTTTAGCTGAATTTGTTCTCTTTCGGAAGAAAATTTCTTTCCTAAAG : GTGCTTGCACTCACTGTTGTATCAGTAGGTGTTGCTGTTGCTACGGTAACAGATTTG</gDNA_template>
            <first_frame> M  P  V  I  F  S  D  N  T  I  R  F  V  T  C  T  *  I  F  *  L  K  S  L  R  L  T  R  Q  N  P  L  S  L  K  K  N  Q  Y  *  L  L  I  N  L  *  D  L  H  L  L  S  F  I  L  S  E  W  *  L  V  D  T  E  I  S  W  I  E  R  K  K  *  W  V  F  *  *  E  K  M  *  G  S  Y  S  R  G  R  I  V  M  L  V  K  K  :  E  E  H  W  R  R  H  E  R  P  C  L  A  N  Y  E  H  L  E  V  G  S  A  N  K  L  P  Y  G  G  L  L  L  H  *  H  S  I  F  L  F  L  L  V  L  S  *  *  T  N  W :   F  L  L  Q  S  D  L  T  I  Q  F  S  S  L  S  C  I  M  S  V  A  G  *  *  W  L  F  L  M  L  S  P  S  F  P  C  L  H  H  Q  N  R  Q  N  I  H  R  C  C  L  L  V  *  L  C  H  F  L  L  G  L  Q  M  *  A  *  S  I  I   : V  *  D  F  T  R  W  Q  R  L  Q  *  H  Q  L  S  F  *  L  N  L  F  S  F  G  R  K  F  L  S  *  R :   C  L  H  S  L  L  Y  Q  *  V  L  L  L  L  R  *  Q  I   </first_frame>
            <second_frame>  C  P  *  F  S  P  T  I  L  Y  A  L  S  L  V  P  K  S  F  N  S  N  H  S  V  *  P  D  K  T  L  F  P  *  K  K  I  S  T  N  Y  S  L  I  F  E  I  C  I  Y  F  H  L  F  *  V  N  G  S  *  L  I  Q  K  L  V  G  L  R  E  K  N  D  G  F  F  D  E  K  R  C  E  E  A  T  Q  E  E  G  *  *  C  W  *  K  R :   K  S  I  G  G  G  T  S  V  L  V  *  Q  I  T  S  I  W  R  W  E  A  P  T  N  Y  L  M  G  A  Y  C  C  I  D  I  Q  F  F  C  F  C  *  Y  Y  L  D  E  Q  I   : G  S  C  Y  S  R  I  *  L  S  N  F  P  L  F  P  A  L  C  L  *  L  V  D  N  G  Y  S  *  C  S  L  H  P  F  L  V  Y  T  I  K  I  D  K  I  F  I  V  V  V  S  W  Y  S  Y  V  T  F  Y  W  A  C  K  C  E  L  E  V  *  *  :  C  R  I  L  P  D  G  K  D  C  S  N  T  S  Y  R  F  S  *  I  C  S  L  S  E  E  N  F  F  P  K   : G  A  C  T  H  C  C  I  S  R  C  C  C  C  Y  G  N  R  F  </second_frame>
            <third_frame>   A  R  D  F  L  R  Q  Y  Y  T  L  C  H  L  Y  L  N  L  L  T  Q  I  T  P  F  N  P  T  K  P  S  F  L  K  K  K  S  V  L  I  T  H  *  S  L  R  F  A  F  T  F  I  Y  F  E  *  M  V  A  S  *  Y  R  N  *  L  D  *  E  K  K  M  M  G  F  L  M  R  K  D  V  R  K  L  L  K  R  K  D  S  D  A  G  E  K   : G  R  A  L  E  E  A  R  A  S  L  F  S  K  L  R  A  F  G  G  G  K  R  Q  Q  T  T  L  W  G  P  T  V  A  L  T  F  N  F  F  V  S  V  S  I  I  L  M  N  K  L  :  V  L  V  T  V  G  F  N  Y  P  I  F  L  S  F  L  H  Y  V  C  S  W  L  I  M  A  I  L  N  A  L  S  I  L  S  L  S  T  P  S  K  S  T  K  Y  S  S  L  L  S  L  G  I  V  M  S  L  S  T  G  L  A  N  V  S  L  K  Y  N  S :   V  G  F  Y  Q  M  A  K  I  A  V  T  P  A  I  V  L  A  E  F  V  L  F  R  K  K  I  S  F  L  K  :  V  L  A  L  T  V  V  S  V  G  V  A  V  A  T  V  T  D  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26712" stop="26631"/>
                    <exon start="25640" stop="25489"/>
                    <exon start="25401" stop="25193"/>
                    <exon start="25109" stop="25016"/>
                    <exon start="24754" stop="24698"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKKMMGFLMRKDVRKLLKRKDSDAGEKGRALEEARASLFSKLRAFGGGKRQQTTLWGPTVALTFNFFVSVSIILMNKLVLVTVGFNYPIFLSFLHYVCSWLIMAILNALSILSLSTPSKSTKYSSLLSLGIVMSLSTGLANVSLKYNSVGFYQMAKIAVTPAIVLAEFVLFRKKISFLKVLALTVVSVGVAVATVTDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="28346" PGL_stop="27905"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28346" e_stop="27905"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28346" e_stop="27905" e_length="442"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28346" stop="27905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28342" stop="27905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28290" stop="27905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28097" stop="27928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336072" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAGTAGTCCTTTTAAACGTAACACAGTCAACCAATTTCCGCAAGGATGGTCACCCGTCTGTGTATGGTAAGGTTGGTAAAAAGGGTAAGCAAGATTGTAGCCATTGGTGTCTACCGGGAGTCCCCGATGCATGGAATGAGCTAATCTATGCCACTTTGGTGTTGCAACAATGAGCTGAGGCTGTTTGTGCAGCAAATGTATCATTGGCTTGTAACATTGTAATATGAGATGAATATTAGTTAAGTCATTTTTTAGTGAAGTTGCATTGTTTCAGTTTTTTTGTGCTAATATTAGACACTATATATTCTTATTTCTAGGATCAACTCACTTCAAAGTTTTGTAATACCAAACTTATGCTGCTTCACTAAGCAATGTTATCTTCTTTTTTTTCTAAGAGAAGTATTCGGAATACTCTAAATTTGTTGTGAATTATCAGTTTC</gDNA_template>
            <first_frame> P  S  S  P  F  K  R  N  T  V  N  Q  F  P  Q  G  W  S  P  V  C  V  W  *  G  W  *  K  G  *  A  R  L  *  P  L  V  S  T  G  S  P  R  C  M  E  *  A  N  L  C  H  F  G  V  A  T  M  S  *  G  C  L  C  S  K  C  I  I  G  L  *  H  C  N  M  R  *  I  L  V  K  S  F  F  S  E  V  A  L  F  Q  F  F  C  A  N  I  R  H  Y  I  F  L  F  L  G  S  T  H  F  K  V  L  *  Y  Q  T  Y  A  A  S  L  S  N  V  I  F  F  F  F  *  E  K  Y  S  E  Y  S  K  F  V  V  N  Y  Q  F  </first_frame>
            <second_frame>  P  V  V  L  L  N  V  T  Q  S  T  N  F  R  K  D  G  H  P  S  V  Y  G  K  V  G  K  K  G  K  Q  D  C  S  H  W  C  L  P  G  V  P  D  A  W  N  E  L  I  Y  A  T  L  V  L  Q  Q  *  A  E  A  V  C  A  A  N  V  S  L  A  C  N  I  V  I  *  D  E  Y  *  L  S  H  F  L  V  K  L  H  C  F  S  F  F  V  L  I  L  D  T  I  Y  S  Y  F  *  D  Q  L  T  S  K  F  C  N  T  K  L  M  L  L  H  *  A  M  L  S  S  F  F  S  K  R  S  I  R  N  T  L  N  L  L  *  I  I  S  F </second_frame>
            <third_frame>   Q  *  S  F  *  T  *  H  S  Q  P  I  S  A  R  M  V  T  R  L  C  M  V  R  L  V  K  R  V  S  K  I  V  A  I  G  V  Y  R  E  S  P  M  H  G  M  S  *  S  M  P  L  W  C  C  N  N  E  L  R  L  F  V  Q  Q  M  Y  H  W  L  V  T  L  *  Y  E  M  N  I  S  *  V  I  F  *  *  S  C  I  V  S  V  F  L  C  *  Y  *  T  L  Y  I  L  I  S  R  I  N  S  L  Q  S  F  V  I  P  N  L  C  C  F  T  K  Q  C  Y  L  L  F  F  L  R  E  V  F  G  I  L  *  I  C  C  E  L  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0097J03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="31601" PGL_stop="28383"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31601" e_stop="30861"/>
            <exon e_start="29510" e_stop="29318"/>
            <exon e_start="29193" e_stop="29000"/>
            <exon e_start="28798" e_stop="28643"/>
            <exon e_start="28472" e_stop="28383"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.286" acc_prob="0.355" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="1.000" e_score="0.987"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31601" e_stop="30861" e_length="741"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="30860" i_stop="29511" i_length="1350"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29510" e_stop="29318" e_length="193"/>
          </exon>
          <intron i_serial="2" don_prob="0.286" acc_prob="0.355">
            <gDNA_intron_boundary i_start="29317" i_stop="29194" i_length="124"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29193" e_stop="29000" e_length="194"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.926">
            <gDNA_intron_boundary i_start="28999" i_stop="28799" i_length="201"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="28798" e_stop="28643" e_length="156"/>
          </exon>
          <intron i_serial="4" don_prob="0.947" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28642" i_stop="28473" i_length="170"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="28472" e_stop="28383" e_length="90"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31601" stop="31018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31555" stop="30944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31134" stop="30861"/>
              <exon start="29510" stop="29318"/>
              <exon start="29193" stop="29000"/>
              <exon start="28798" stop="28643"/>
              <exon start="28472" stop="28383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31013" stop="30861"/>
              <exon start="29510" stop="29318"/>
              <exon start="29193" stop="29119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256525" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTATTTTCCTTGTATTTTTCTTCTTTGTTTCAACTATCTTCTTTTTCAGTAGAAAAATTGTTCAACCTACTCAAATACTCTCTGTTTACAGAGAAACCCTTTCTCAAACCCCTATATTCTTGCAAAATCAGACCCCCATTTTGCCAAAATCTAGTCTTGATGATAGTTTGGTTGAACCCATTTCACTAAACACTTCTACAGAGATACCCATTTTGTCAAAATCTGATTTTGATGGTAGTTTGGTTGAATCAGAGACCATTTCTAGTTCTAATGAAACATCAAGATTTCAAGCTAATACAGAGATACCCATTTTGTCAAAATCTGATTTTGATGGTAGTTTGGTTGAATCAGAGACTATCTCTAGTTCTAATGAAACATCAAGATTTCAAGAATTAGAGGTTAATACACAGATGCCCATTTTGTCAAAAACTGATTTTGATGATAATTTGGTTAAACCCAATTCACCTGAGACTAGTTCTAGTTCTAGTGAGAAGTCAAAATTTGATCTTGATGTAACATCAGAAACACCCAAATCTAGTTTAGTTGAGAAAAACTCAAGACCTATTGGAGAAAGTTGTGATCTTTTTAAGGGAAGATGGGTTAAAGATGAGAATCATCCAATTTATAAGCCAGGGTCTTGCCCTTATGTGGATGAGGCTTTTGATTGTCAGACTAATGGTAGGCCAGACTCACAGTATCTTAAATGGAGATGGAAGCCATTTGGATGTCATCTTCCAAG : GTTTAGTCCATCAGATTTTTTGTACAGATTGAAAGGAAAGAGGCTGATGCTGGTTGGGGACTCAATGAACCGGAACCAGTTTGAATCTCTCCTTTGCCTTCTTCGTGAAGGCCTCACTAATAAGAGTAAAATGTACGAGATCCATGGGTATAAGATAACAAAAGGAAGAGGCTATTATGTTTTCAAATTTGAG : GATTATAACTGCACTGTTGAGTTTGTGCGCTCGCACTTCCTTGTTAGAGAAGGAGTACGTATCAATCCTCAAGGAAGCTCAAATCCAACTCTATCAATAGATCGCATCGACAAAACATCTAATCGTTGGAAGGGAGCTGACATTCTAATCTTCAATACGGGGCATTGGTGGACTCATGGGAAGACTGCCAGGGG : GAAAAATTACTATAAAGAAGGTGACCTAATATACCCTAAATTTGATGCCGTTGAAGCTTATAGGAGAGCATTGAAAACCTGGGCTAAGTGGATTGAAGAAAACATGAGCCGTGAAAAGTTGATTATATATCGTGGGTATTCTTCAGCTCACTATAG : AGGCGGAGACTGGGATTCAGGTGGAAGTTGTAACAAAGAGAGTGAACCTGTTTCGAAAGGTGCTATCCTTGGAAACTATCCGATGAAAAT</gDNA_template>
            <first_frame> L  Y  F  P  C  I  F  L  L  C  F  N  Y  L  L  F  Q  *  K  N  C  S  T  Y  S  N  T  L  C  L  Q  R  N  P  F  S  N  P  Y  I  L  A  K  S  D  P  H  F  A  K  I  *  S  *  *  *  F  G  *  T  H  F  T  K  H  F  Y  R  D  T  H  F  V  K  I  *  F  *  W  *  F  G  *  I  R  D  H  F  *  F  *  *  N  I  K  I  S  S  *  Y  R  D  T  H  F  V  K  I  *  F  *  W  *  F  G  *  I  R  D  Y  L  *  F  *  *  N  I  K  I  S  R  I  R  G  *  Y  T  D  A  H  F  V  K  N  *  F  *  *  *  F  G  *  T  Q  F  T  *  D  *  F  *  F  *  *  E  V  K  I  *  S  *  C  N  I  R  N  T  Q  I  *  F  S  *  E  K  L  K  T  Y  W  R  K  L  *  S  F  *  G  K  M  G  *  R  *  E  S  S  N  L  *  A  R  V  L  P  L  C  G  *  G  F  *  L  S  D  *  W  *  A  R  L  T  V  S  *  M  E  M  E  A  I  W  M  S  S  S  K  :  V  *  S  I  R  F  F  V  Q  I  E  R  K  E  A  D  A  G  W  G  L  N  E  P  E  P  V  *  I  S  P  L  P  S  S  *  R  P  H  *  *  E  *  N  V  R  D  P  W  V  *  D  N  K  R  K  R  L  L  C  F  Q  I  *   : G  L  *  L  H  C  *  V  C  A  L  A  L  P  C  *  R  R  S  T  Y  Q  S  S  R  K  L  K  S  N  S  I  N  R  S  H  R  Q  N  I  *  S  L  E  G  S  *  H  S  N  L  Q  Y  G  A  L  V  D  S  W  E  D  C  Q  G  :  E  K  L  L  *  R  R  *  P  N  I  P  *  I  *  C  R  *  S  L  *  E  S  I  E  N  L  G  *  V  D  *  R  K  H  E  P  *  K  V  D  Y  I  S  W  V  F  F  S  S  L  *  :  R  R  R  L  G  F  R  W  K  L  *  Q  R  E  *  T  C  F  E  R  C  Y  P  W  K  L  S  D  E  N </first_frame>
            <second_frame>  C  I  F  L  V  F  F  F  F  V  S  T  I  F  F  F  S  R  K  I  V  Q  P  T  Q  I  L  S  V  Y  R  E  T  L  S  Q  T  P  I  F  L  Q  N  Q  T  P  I  L  P  K  S  S  L  D  D  S  L  V  E  P  I  S  L  N  T  S  T  E  I  P  I  L  S  K  S  D  F  D  G  S  L  V  E  S  E  T  I  S  S  S  N  E  T  S  R  F  Q  A  N  T  E  I  P  I  L  S  K  S  D  F  D  G  S  L  V  E  S  E  T  I  S  S  S  N  E  T  S  R  F  Q  E  L  E  V  N  T  Q  M  P  I  L  S  K  T  D  F  D  D  N  L  V  K  P  N  S  P  E  T  S  S  S  S  S  E  K  S  K  F  D  L  D  V  T  S  E  T  P  K  S  S  L  V  E  K  N  S  R  P  I  G  E  S  C  D  L  F  K  G  R  W  V  K  D  E  N  H  P  I  Y  K  P  G  S  C  P  Y  V  D  E  A  F  D  C  Q  T  N  G  R  P  D  S  Q  Y  L  K  W  R  W  K  P  F  G  C  H  L  P  R :   F  S  P  S  D  F  L  Y  R  L  K  G  K  R  L  M  L  V  G  D  S  M  N  R  N  Q  F  E  S  L  L  C  L  L  R  E  G  L  T  N  K  S  K  M  Y  E  I  H  G  Y  K  I  T  K  G  R  G  Y  Y  V  F  K  F  E  :  D  Y  N  C  T  V  E  F  V  R  S  H  F  L  V  R  E  G  V  R  I  N  P  Q  G  S  S  N  P  T  L  S  I  D  R  I  D  K  T  S  N  R  W  K  G  A  D  I  L  I  F  N  T  G  H  W  W  T  H  G  K  T  A  R  G :   K  N  Y  Y  K  E  G  D  L  I  Y  P  K  F  D  A  V  E  A  Y  R  R  A  L  K  T  W  A  K  W  I  E  E  N  M  S  R  E  K  L  I  I  Y  R  G  Y  S  S  A  H  Y  R :   G  G  D  W  D  S  G  G  S  C  N  K  E  S  E  P  V  S  K  G  A  I  L  G  N  Y  P  M  K   </second_frame>
            <third_frame>   V  F  S  L  Y  F  S  S  L  F  Q  L  S  S  F  S  V  E  K  L  F  N  L  L  K  Y  S  L  F  T  E  K  P  F  L  K  P  L  Y  S  C  K  I  R  P  P  F  C  Q  N  L  V  L  M  I  V  W  L  N  P  F  H  *  T  L  L  Q  R  Y  P  F  C  Q  N  L  I  L  M  V  V  W  L  N  Q  R  P  F  L  V  L  M  K  H  Q  D  F  K  L  I  Q  R  Y  P  F  C  Q  N  L  I  L  M  V  V  W  L  N  Q  R  L  S  L  V  L  M  K  H  Q  D  F  K  N  *  R  L  I  H  R  C  P  F  C  Q  K  L  I  L  M  I  I  W  L  N  P  I  H  L  R  L  V  L  V  L  V  R  S  Q  N  L  I  L  M  *  H  Q  K  H  P  N  L  V  *  L  R  K  T  Q  D  L  L  E  K  V  V  I  F  L  R  E  D  G  L  K  M  R  I  I  Q  F  I  S  Q  G  L  A  L  M  W  M  R  L  L  I  V  R  L  M  V  G  Q  T  H  S  I  L  N  G  D  G  S  H  L  D  V  I  F  Q   : G  L  V  H  Q  I  F  C  T  D  *  K  E  R  G  *  C  W  L  G  T  Q  *  T  G  T  S  L  N  L  S  F  A  F  F  V  K  A  S  L  I  R  V  K  C  T  R  S  M  G  I  R  *  Q  K  E  E  A  I  M  F  S  N  L  R :   I  I  T  A  L  L  S  L  C  A  R  T  S  L  L  E  K  E  Y  V  S  I  L  K  E  A  Q  I  Q  L  Y  Q  *  I  A  S  T  K  H  L  I  V  G  R  E  L  T  F  *  S  S  I  R  G  I  G  G  L  M  G  R  L  P  G   : G  K  I  T  I  K  K  V  T  *  Y  T  L  N  L  M  P  L  K  L  I  G  E  H  *  K  P  G  L  S  G  L  K  K  T  *  A  V  K  S  *  L  Y  I  V  G  I  L  Q  L  T  I   : E  A  E  T  G  I  Q  V  E  V  V  T  K  R  V  N  L  F  R  K  V  L  S  L  E  T  I  R  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31600" stop="30861"/>
                    <exon start="29510" stop="29318"/>
                    <exon start="29193" stop="29000"/>
                    <exon start="28798" stop="28643"/>
                    <exon start="28472" stop="28385"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1371</number_coding_nucleotides>
                  <number_encoded_amino_acids>457</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CIFLVFFFFVSTIFFFSRKIVQPTQILSVYRETLSQTPIFLQNQTPILPKSSLDDSLVEPISLNTSTEIPILSKSDFDGSLVESETISSSNETSRFQANTEIPILSKSDFDGSLVESETISSSNETSRFQELEVNTQMPILSKTDFDDNLVKPNSPETSSSSSEKSKFDLDVTSETPKSSLVEKNSRPIGESCDLFKGRWVKDENHPIYKPGSCPYVDEAFDCQTNGRPDSQYLKWRWKPFGCHLPRFSPSDFLYRLKGKRLMLVGDSMNRNQFESLLCLLREGLTNKSKMYEIHGYKITKGRGYYVFKFEDYNCTVEFVRSHFLVREGVRINPQGSSNPTLSIDRIDKTSNRWKGADILIFNTGHWWTHGKTARGKNYYKEGDLIYPKFDAVEAYRRALKTWAKWIEENMSREKLIIYRGYSSAHYRGGDWDSGGSCNKESEPVSKGAILGNYPMK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="31502" e_stop="31386"/>
            <exon e_start="31178" e_stop="30861"/>
            <exon e_start="29510" e_stop="29318"/>
            <exon e_start="29193" e_stop="29000"/>
            <exon e_start="28798" e_stop="28643"/>
            <exon e_start="28472" e_stop="28383"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.889"/>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="0.985"/>
          <exon-intron don_prob="0.286" acc_prob="0.355" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="1.000" e_score="0.987"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.889">
            <gDNA_exon_boundary e_start="31502" e_stop="31386" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31385" i_stop="31179" i_length="207"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="31178" e_stop="30861" e_length="318"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="30860" i_stop="29511" i_length="1350"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29510" e_stop="29318" e_length="193"/>
          </exon>
          <intron i_serial="3" don_prob="0.286" acc_prob="0.355">
            <gDNA_intron_boundary i_start="29317" i_stop="29194" i_length="124"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29193" e_stop="29000" e_length="194"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.926">
            <gDNA_intron_boundary i_start="28999" i_stop="28799" i_length="201"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="28798" e_stop="28643" e_length="156"/>
          </exon>
          <intron i_serial="5" don_prob="0.947" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28642" i_stop="28473" i_length="170"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="28472" e_stop="28383" e_length="90"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31502" stop="31386"/>
              <exon start="31178" stop="31089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31134" stop="30861"/>
              <exon start="29510" stop="29318"/>
              <exon start="29193" stop="29000"/>
              <exon start="28798" stop="28643"/>
              <exon start="28472" stop="28383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31013" stop="30861"/>
              <exon start="29510" stop="29318"/>
              <exon start="29193" stop="29119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256525" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTTCTCAAACCCCTATATTCTTGCAAAATCAGACCCCCATTTTGCCAAAATCTAGTCTTGATGATAGTTTGGTTGAACCCATTTCACTAAACACTTCTACAGAGATACCCATTTT : GTCAAAAACTGATTTTGATGATAATTTGGTTAAACCCAATTCACCTGAGACTAGTTCTAGTTCTAGTGAGAAGTCAAAATTTGATCTTGATGTAACATCAGAAACACCCAAATCTAGTTTAGTTGAGAAAAACTCAAGACCTATTGGAGAAAGTTGTGATCTTTTTAAGGGAAGATGGGTTAAAGATGAGAATCATCCAATTTATAAGCCAGGGTCTTGCCCTTATGTGGATGAGGCTTTTGATTGTCAGACTAATGGTAGGCCAGACTCACAGTATCTTAAATGGAGATGGAAGCCATTTGGATGTCATCTTCCAAG : GTTTAGTCCATCAGATTTTTTGTACAGATTGAAAGGAAAGAGGCTGATGCTGGTTGGGGACTCAATGAACCGGAACCAGTTTGAATCTCTCCTTTGCCTTCTTCGTGAAGGCCTCACTAATAAGAGTAAAATGTACGAGATCCATGGGTATAAGATAACAAAAGGAAGAGGCTATTATGTTTTCAAATTTGAG : GATTATAACTGCACTGTTGAGTTTGTGCGCTCGCACTTCCTTGTTAGAGAAGGAGTACGTATCAATCCTCAAGGAAGCTCAAATCCAACTCTATCAATAGATCGCATCGACAAAACATCTAATCGTTGGAAGGGAGCTGACATTCTAATCTTCAATACGGGGCATTGGTGGACTCATGGGAAGACTGCCAGGGG : GAAAAATTACTATAAAGAAGGTGACCTAATATACCCTAAATTTGATGCCGTTGAAGCTTATAGGAGAGCATTGAAAACCTGGGCTAAGTGGATTGAAGAAAACATGAGCCGTGAAAAGTTGATTATATATCGTGGGTATTCTTCAGCTCACTATAG : AGGCGGAGACTGGGATTCAGGTGGAAGTTGTAACAAAGAGAGTGAACCTGTTTCGAAAGGTGCTATCCTTGGAAACTATCCGATGAAAAT</gDNA_template>
            <first_frame> P  F  S  N  P  Y  I  L  A  K  S  D  P  H  F  A  K  I  *  S  *  *  *  F  G  *  T  H  F  T  K  H  F  Y  R  D  T  H  F  :  V  K  N  *  F  *  *  *  F  G  *  T  Q  F  T  *  D  *  F  *  F  *  *  E  V  K  I  *  S  *  C  N  I  R  N  T  Q  I  *  F  S  *  E  K  L  K  T  Y  W  R  K  L  *  S  F  *  G  K  M  G  *  R  *  E  S  S  N  L  *  A  R  V  L  P  L  C  G  *  G  F  *  L  S  D  *  W  *  A  R  L  T  V  S  *  M  E  M  E  A  I  W  M  S  S  S  K  :  V  *  S  I  R  F  F  V  Q  I  E  R  K  E  A  D  A  G  W  G  L  N  E  P  E  P  V  *  I  S  P  L  P  S  S  *  R  P  H  *  *  E  *  N  V  R  D  P  W  V  *  D  N  K  R  K  R  L  L  C  F  Q  I  *   : G  L  *  L  H  C  *  V  C  A  L  A  L  P  C  *  R  R  S  T  Y  Q  S  S  R  K  L  K  S  N  S  I  N  R  S  H  R  Q  N  I  *  S  L  E  G  S  *  H  S  N  L  Q  Y  G  A  L  V  D  S  W  E  D  C  Q  G  :  E  K  L  L  *  R  R  *  P  N  I  P  *  I  *  C  R  *  S  L  *  E  S  I  E  N  L  G  *  V  D  *  R  K  H  E  P  *  K  V  D  Y  I  S  W  V  F  F  S  S  L  *  :  R  R  R  L  G  F  R  W  K  L  *  Q  R  E  *  T  C  F  E  R  C  Y  P  W  K  L  S  D  E  N </first_frame>
            <second_frame>  L  S  Q  T  P  I  F  L  Q  N  Q  T  P  I  L  P  K  S  S  L  D  D  S  L  V  E  P  I  S  L  N  T  S  T  E  I  P  I  L :   S  K  T  D  F  D  D  N  L  V  K  P  N  S  P  E  T  S  S  S  S  S  E  K  S  K  F  D  L  D  V  T  S  E  T  P  K  S  S  L  V  E  K  N  S  R  P  I  G  E  S  C  D  L  F  K  G  R  W  V  K  D  E  N  H  P  I  Y  K  P  G  S  C  P  Y  V  D  E  A  F  D  C  Q  T  N  G  R  P  D  S  Q  Y  L  K  W  R  W  K  P  F  G  C  H  L  P  R :   F  S  P  S  D  F  L  Y  R  L  K  G  K  R  L  M  L  V  G  D  S  M  N  R  N  Q  F  E  S  L  L  C  L  L  R  E  G  L  T  N  K  S  K  M  Y  E  I  H  G  Y  K  I  T  K  G  R  G  Y  Y  V  F  K  F  E  :  D  Y  N  C  T  V  E  F  V  R  S  H  F  L  V  R  E  G  V  R  I  N  P  Q  G  S  S  N  P  T  L  S  I  D  R  I  D  K  T  S  N  R  W  K  G  A  D  I  L  I  F  N  T  G  H  W  W  T  H  G  K  T  A  R  G :   K  N  Y  Y  K  E  G  D  L  I  Y  P  K  F  D  A  V  E  A  Y  R  R  A  L  K  T  W  A  K  W  I  E  E  N  M  S  R  E  K  L  I  I  Y  R  G  Y  S  S  A  H  Y  R :   G  G  D  W  D  S  G  G  S  C  N  K  E  S  E  P  V  S  K  G  A  I  L  G  N  Y  P  M  K   </second_frame>
            <third_frame>   F  L  K  P  L  Y  S  C  K  I  R  P  P  F  C  Q  N  L  V  L  M  I  V  W  L  N  P  F  H  *  T  L  L  Q  R  Y  P  F   : C  Q  K  L  I  L  M  I  I  W  L  N  P  I  H  L  R  L  V  L  V  L  V  R  S  Q  N  L  I  L  M  *  H  Q  K  H  P  N  L  V  *  L  R  K  T  Q  D  L  L  E  K  V  V  I  F  L  R  E  D  G  L  K  M  R  I  I  Q  F  I  S  Q  G  L  A  L  M  W  M  R  L  L  I  V  R  L  M  V  G  Q  T  H  S  I  L  N  G  D  G  S  H  L  D  V  I  F  Q   : G  L  V  H  Q  I  F  C  T  D  *  K  E  R  G  *  C  W  L  G  T  Q  *  T  G  T  S  L  N  L  S  F  A  F  F  V  K  A  S  L  I  R  V  K  C  T  R  S  M  G  I  R  *  Q  K  E  E  A  I  M  F  S  N  L  R :   I  I  T  A  L  L  S  L  C  A  R  T  S  L  L  E  K  E  Y  V  S  I  L  K  E  A  Q  I  Q  L  Y  Q  *  I  A  S  T  K  H  L  I  V  G  R  E  L  T  F  *  S  S  I  R  G  I  G  G  L  M  G  R  L  P  G   : G  K  I  T  I  K  K  V  T  *  Y  T  L  N  L  M  P  L  K  L  I  G  E  H  *  K  P  G  L  S  G  L  K  K  T  *  A  V  K  S  *  L  Y  I  V  G  I  L  Q  L  T  I   : E  A  E  T  G  I  Q  V  E  V  V  T  K  R  V  N  L  F  R  K  V  L  S  L  E  T  I  R  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31501" stop="31386"/>
                    <exon start="31178" stop="30861"/>
                    <exon start="29510" stop="29318"/>
                    <exon start="29193" stop="29000"/>
                    <exon start="28798" stop="28643"/>
                    <exon start="28472" stop="28385"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1065</number_coding_nucleotides>
                  <number_encoded_amino_acids>355</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSQTPIFLQNQTPILPKSSLDDSLVEPISLNTSTEIPILSKTDFDDNLVKPNSPETSSSSSEKSKFDLDVTSETPKSSLVEKNSRPIGESCDLFKGRWVKDENHPIYKPGSCPYVDEAFDCQTNGRPDSQYLKWRWKPFGCHLPRFSPSDFLYRLKGKRLMLVGDSMNRNQFESLLCLLREGLTNKSKMYEIHGYKITKGRGYYVFKFEDYNCTVEFVRSHFLVREGVRINPQGSSNPTLSIDRIDKTSNRWKGADILIFNTGHWWTHGKTARGKNYYKEGDLIYPKFDAVEAYRRALKTWAKWIEENMSREKLIIYRGYSSAHYRGGDWDSGGSCNKESEPVSKGAILGNYPMK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="38371" PGL_stop="39159"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38371" e_stop="38670"/>
            <exon e_start="38796" e_stop="39159"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.853" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38371" e_stop="38670" e_length="300"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.853">
            <gDNA_intron_boundary i_start="38671" i_stop="38795" i_length="125"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38796" e_stop="39159" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38371" stop="38670"/>
              <exon start="38796" stop="39143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38371" stop="38670"/>
              <exon start="38796" stop="38807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38386" stop="38670"/>
              <exon start="38796" stop="39150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38386" stop="38670"/>
              <exon start="38796" stop="39114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38432" stop="38670"/>
              <exon start="38796" stop="39159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38432" stop="38670"/>
              <exon start="38796" stop="39137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38433" stop="38670"/>
              <exon start="38796" stop="39138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38436" stop="38670"/>
              <exon start="38796" stop="39137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38437" stop="38670"/>
              <exon start="38796" stop="39138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38537" stop="38670"/>
              <exon start="38796" stop="39028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292038" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAAAGACGCCTTTCTTCTTAAGCCAAACTCTGTTTCTGCTGAAAATAGGTATTTCCCACTAACCCTTCTTCTTCTTCAAGCATTACAAAGAAAATAGTGTTTGTTTCAATGGCGTACGTCGATCATGCTTTCTCAATTTCCGATGAGGATATGATGATGGAAGGTTCTCATGCCGATAACAATCGTGGACCTATCAAAGAGATCGCTCTTGCTGTTTCCCTTCTTGTATTTGGTACCCTAGCTATTTTTCTAGGTATTTTCATGGCAATCAATAAGGTCGGTGGCGATACAGCTCATG : GGCTTTTTTTTGCTATACTTGGTGGAGTTTTGTTTATACCAGGGTTCTACTATACAAGGATTGCATACTATGCTTACAAGGGTTATAAAGGTTTCTCTTTTTCCAATATACCTCCTGTCTAGAGTCGAGTTTCGATTATCGATTGTTGATTATCGAAGCTCTTCATACATTGTACAGCTACCTCATTTACTCTACCTAGATAAGCTTGTGAAGAAAAAAAAAATTAGTGTTGCTTCTAATAGGTTGCCTCGGATGTTGGATGTTGAATCTTTACTTGCTAAACTATGTAATCCTTTAACTCAGTATGGACACGATGTAATAATACGAGTGCTTGTTTGTTTACTGATGTTTTTCAATTGAATCG</gDNA_template>
            <first_frame> A  K  D  A  F  L  L  K  P  N  S  V  S  A  E  N  R  Y  F  P  L  T  L  L  L  L  Q  A  L  Q  R  K  *  C  L  F  Q  W  R  T  S  I  M  L  S  Q  F  P  M  R  I  *  *  W  K  V  L  M  P  I  T  I  V  D  L  S  K  R  S  L  L  L  F  P  F  L  Y  L  V  P  *  L  F  F  *  V  F  S  W  Q  S  I  R  S  V  A  I  Q  L  M  :  G  F  F  L  L  Y  L  V  E  F  C  L  Y  Q  G  S  T  I  Q  G  L  H  T  M  L  T  R  V  I  K  V  S  L  F  P  I  Y  L  L  S  R  V  E  F  R  L  S  I  V  D  Y  R  S  S  S  Y  I  V  Q  L  P  H  L  L  Y  L  D  K  L  V  K  K  K  K  I  S  V  A  S  N  R  L  P  R  M  L  D  V  E  S  L  L  A  K  L  C  N  P  L  T  Q  Y  G  H  D  V  I  I  R  V  L  V  C  L  L  M  F  F  N  *  I  </first_frame>
            <second_frame>  Q  K  T  P  F  F  L  S  Q  T  L  F  L  L  K  I  G  I  S  H  *  P  F  F  F  F  K  H  Y  K  E  N  S  V  C  F  N  G  V  R  R  S  C  F  L  N  F  R  *  G  Y  D  D  G  R  F  S  C  R  *  Q  S  W  T  Y  Q  R  D  R  S  C  C  F  P  S  C  I  W  Y  P  S  Y  F  S  R  Y  F  H  G  N  Q  *  G  R  W  R  Y  S  S  W :   A  F  F  C  Y  T  W  W  S  F  V  Y  T  R  V  L  L  Y  K  D  C  I  L  C  L  Q  G  L  *  R  F  L  F  F  Q  Y  T  S  C  L  E  S  S  F  D  Y  R  L  L  I  I  E  A  L  H  T  L  Y  S  Y  L  I  Y  S  T  *  I  S  L  *  R  K  K  K  L  V  L  L  L  I  G  C  L  G  C  W  M  L  N  L  Y  L  L  N  Y  V  I  L  *  L  S  M  D  T  M  *  *  Y  E  C  L  F  V  Y  *  C  F  S  I  E  S </second_frame>
            <third_frame>   K  R  R  L  S  S  *  A  K  L  C  F  C  *  K  *  V  F  P  T  N  P  S  S  S  S  S  I  T  K  K  I  V  F  V  S  M  A  Y  V  D  H  A  F  S  I  S  D  E  D  M  M  M  E  G  S  H  A  D  N  N  R  G  P  I  K  E  I  A  L  A  V  S  L  L  V  F  G  T  L  A  I  F  L  G  I  F  M  A  I  N  K  V  G  G  D  T  A  H   : G  L  F  F  A  I  L  G  G  V  L  F  I  P  G  F  Y  Y  T  R  I  A  Y  Y  A  Y  K  G  Y  K  G  F  S  F  S  N  I  P  P  V  *  S  R  V  S  I  I  D  C  *  L  S  K  L  F  I  H  C  T  A  T  S  F  T  L  P  R  *  A  C  E  E  K  K  N  *  C  C  F  *  *  V  A  S  D  V  G  C  *  I  F  T  C  *  T  M  *  S  F  N  S  V  W  T  R  C  N  N  T  S  A  C  L  F  T  D  V  F  Q  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38626" stop="38670"/>
                    <exon start="38796" stop="39155"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFSWQSIRSVAIQLMGFFLLYLVEFCLYQGSTIQGLHTMLTRVIKVSLFPIYLLSRVEFRLSIVDYRSSSYIVQLPHLLYLDKLVKKKKISVASNRLPRMLDVESLLAKLCNPLTQYGHDVIIRVLVCLLMFFN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38421" stop="38670"/>
                    <exon start="38796" stop="38917"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFPTNPSSSSSITKKIVFVSMAYVDHAFSISDEDMMMEGSHADNNRGPIKEIALAVSLLVFGTLAIFLGIFMAINKVGGDTAHGLFFAILGGVLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="44306" PGL_stop="40631"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44306" e_stop="44050"/>
            <exon e_start="43906" e_stop="43809"/>
            <exon e_start="41262" e_stop="40815"/>
            <exon e_start="40645" e_stop="40631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.749" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44306" e_stop="44050" e_length="257"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.961">
            <gDNA_intron_boundary i_start="44049" i_stop="43907" i_length="143"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43906" e_stop="43809" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.866" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43808" i_stop="41263" i_length="2546"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41262" e_stop="40815" e_length="448"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.749">
            <gDNA_intron_boundary i_start="40814" i_stop="40646" i_length="169"/>
          </intron>
          <exon e_serial="4" e_score="0.667">
            <gDNA_exon_boundary e_start="40645" e_stop="40631" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44306" stop="44050"/>
              <exon start="43906" stop="43809"/>
              <exon start="41262" stop="40946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44302" stop="44050"/>
              <exon start="43906" stop="43809"/>
              <exon start="41262" stop="40964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44296" stop="44050"/>
              <exon start="43906" stop="43809"/>
              <exon start="41262" stop="40964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44292" stop="44050"/>
              <exon start="43906" stop="43809"/>
              <exon start="41262" stop="41079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44288" stop="44050"/>
              <exon start="43906" stop="43809"/>
              <exon start="41262" stop="40964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41258" stop="40946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41054" stop="40815"/>
              <exon start="40645" stop="40631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228010" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACACTGAATGTACTTCTCCTCCTCCGCCGAGGATCGGTAAGATCGGGCCGTACACGGTTTTCATGACCCCTCCACCCACACCCAAATCCGGTTCTACCGAGCTACCACCACCAATTCAGCCGCAACCGGTTCAGACACCACCGGTTCAGGTGGTCGATAAGTCATGTCCGGTTTGGTCTCCTCCAATGCAGTATGATAAACCCTCTCAGTCTTCTTTTGGGTTTTTCTGGAACGCTGTTGCTAAAGTTCAAAATG : CTCATGCGAGTTTGGATGAACAAGTGGCATACTGGTTTGGATTGAATCAGTCGAAGTATCAGTGGGCATTAGATGATTACTATGAGAGCAAAAATATT : AACAAGGCCGAAGAAAAAGCAAAAGTCGTAGCTAGCAAATTAGAGAATGTATGATATGCCAAAGGCGAAGGTATAAAATCTTGTTAGGATGTGCTATTTGTTTCCTCTTGTTGCTTCTAGTCCTATTCCTGCACGCTATGCCAATATATATGTGTGATTGTCACACATTTTTAGCTGCTATGGTGCAGCAGCTAACAATGTCGCGTTGTATGGTGCAACAGCTAACAATGCTGCTTCTGAAGTTAATTGTTGTTATCTATTACAATATATAATCTATGTACTTTTGTTACTGGTATAAAGTTTCTTGCAGTTGATACATTTTGTTGTTTCTACTCATCATTTTGGTGTCCTATCCAATACTGATGTTATTGCAAGTAATTTGGAGGGAAGTACCCAATGTTAAATCAGTTTTGTTTCCTTTTGATAAATGAATAATTCAAAGACAACA : CATAAACACTAAAAA</gDNA_template>
            <first_frame> *  H  *  M  Y  F  S  S  S  A  E  D  R  *  D  R  A  V  H  G  F  H  D  P  S  T  H  T  Q  I  R  F  Y  R  A  T  T  T  N  S  A  A  T  G  S  D  T  T  G  S  G  G  R  *  V  M  S  G  L  V  S  S  N  A  V  *  *  T  L  S  V  F  F  W  V  F  L  E  R  C  C  *  S  S  K  C :   S  C  E  F  G  *  T  S  G  I  L  V  W  I  E  S  V  E  V  S  V  G  I  R  *  L  L  *  E  Q  K  Y   : *  Q  G  R  R  K  S  K  S  R  S  *  Q  I  R  E  C  M  I  C  Q  R  R  R  Y  K  I  L  L  G  C  A  I  C  F  L  L  L  L  L  V  L  F  L  H  A  M  P  I  Y  M  C  D  C  H  T  F  L  A  A  M  V  Q  Q  L  T  M  S  R  C  M  V  Q  Q  L  T  M  L  L  L  K  L  I  V  V  I  Y  Y  N  I  *  S  M  Y  F  C  Y  W  Y  K  V  S  C  S  *  Y  I  L  L  F  L  L  I  I  L  V  S  Y  P  I  L  M  L  L  Q  V  I  W  R  E  V  P  N  V  K  S  V  L  F  P  F  D  K  *  I  I  Q  R  Q  H :   I  N  T  K   </first_frame>
            <second_frame>  N  T  E  C  T  S  P  P  P  P  R  I  G  K  I  G  P  Y  T  V  F  M  T  P  P  P  T  P  K  S  G  S  T  E  L  P  P  P  I  Q  P  Q  P  V  Q  T  P  P  V  Q  V  V  D  K  S  C  P  V  W  S  P  P  M  Q  Y  D  K  P  S  Q  S  S  F  G  F  F  W  N  A  V  A  K  V  Q  N   : A  H  A  S  L  D  E  Q  V  A  Y  W  F  G  L  N  Q  S  K  Y  Q  W  A  L  D  D  Y  Y  E  S  K  N  I  :  N  K  A  E  E  K  A  K  V  V  A  S  K  L  E  N  V  *  Y  A  K  G  E  G  I  K  S  C  *  D  V  L  F  V  S  S  C  C  F  *  S  Y  S  C  T  L  C  Q  Y  I  C  V  I  V  T  H  F  *  L  L  W  C  S  S  *  Q  C  R  V  V  W  C  N  S  *  Q  C  C  F  *  S  *  L  L  L  S  I  T  I  Y  N  L  C  T  F  V  T  G  I  K  F  L  A  V  D  T  F  C  C  F  Y  S  S  F  W  C  P  I  Q  Y  *  C  Y  C  K  *  F  G  G  K  Y  P  M  L  N  Q  F  C  F  L  L  I  N  E  *  F  K  D  N   : T  *  T  L  K  </second_frame>
            <third_frame>   T  L  N  V  L  L  L  L  R  R  G  S  V  R  S  G  R  T  R  F  S  *  P  L  H  P  H  P  N  P  V  L  P  S  Y  H  H  Q  F  S  R  N  R  F  R  H  H  R  F  R  W  S  I  S  H  V  R  F  G  L  L  Q  C  S  M  I  N  P  L  S  L  L  L  G  F  S  G  T  L  L  L  K  F  K  M  :  L  M  R  V  W  M  N  K  W  H  T  G  L  D  *  I  S  R  S  I  S  G  H  *  M  I  T  M  R  A  K  I  L :   T  R  P  K  K  K  Q  K  S  *  L  A  N  *  R  M  Y  D  M  P  K  A  K  V  *  N  L  V  R  M  C  Y  L  F  P  L  V  A  S  S  P  I  P  A  R  Y  A  N  I  Y  V  *  L  S  H  I  F  S  C  Y  G  A  A  A  N  N  V  A  L  Y  G  A  T  A  N  N  A  A  S  E  V  N  C  C  Y  L  L  Q  Y  I  I  Y  V  L  L  L  L  V  *  S  F  L  Q  L  I  H  F  V  V  S  T  H  H  F  G  V  L  S  N  T  D  V  I  A  S  N  L  E  G  S  T  Q  C  *  I  S  F  V  S  F  *  *  M  N  N  S  K  T  T  :  H  K  H  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44305" stop="44050"/>
                    <exon start="43906" stop="43809"/>
                    <exon start="41262" stop="41209"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTECTSPPPPRIGKIGPYTVFMTPPPTPKSGSTELPPPIQPQPVQTPPVQVVDKSCPVWSPPMQYDKPSQSSFGFFWNAVAKVQNAHASLDEQVAYWFGLNQSKYQWALDDYYESKNINKAEEKAKVVASKLENV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41227" stop="40991"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIRECMICQRRRYKILLGCAICFLLLLLVLFLHAMPIYMCDCHTFLAAMVQQLTMSRCMVQQLTMLLLKLIVVIYYNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="47041" PGL_stop="45691"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47041" e_stop="46784"/>
            <exon e_start="46294" e_stop="45691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="47041" e_stop="46784" e_length="258"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="46783" i_stop="46295" i_length="489"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46294" e_stop="45691" e_length="604"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47041" stop="46784"/>
              <exon start="46294" stop="45691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744799" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGGAGAAACAGGCCTCAGTTAATCATGGCGATTTTGATGCCGACTTTTCAGATACTTACTGGCATTAACATCATACTTTTTTATGCCCCAGTATTGTTTCAGAGTATGGGGTTTAAAAGAGCAGCCTCTCTGTATTCCTCTGCTTTGACTGGTGCAGTTCTTGCTTCATCTACACTTTTATCAATGGCCACTGTCGATAGATGGGGTCGAAGAGTTCTTCTTATTACCGGTGGAATCCAAATGATCATCTGTCAG : GTTATTGTTGCGATAATCTTGGGACTCAAATTTGGAAGTGACAAGGAGCTATCAAGAGGTTACTCGATTATAGTAGTTGTTTTCATTTGCCTCTTTGTAGCGGCGTTTGGATACTCATGGGGGCCTCTTGGATGGACCGTGCCAAGTGAAATTTTCCCTTTAGAGACGAGATCAGCAGGCCAAAGTATCACAGTTACTGTGAATTTGTTCTTCACATTTGCGATAGCACAGTCTTTCCTCTCACTTTTATGTGCTATGAGGTTCGGGATTTTCCTGTTTTTCTCCTGTTGGATTGCTGTCATGACGATATTCATCTATCTGTTCTTGCCTGAAACGAAGGGAGTTCCGATTGAAGAGATGATGCGTCTTTGGGAAAAGCATTGGTTCTGGAAGAAGATCGTTTCGGAGGATCAACAAGTTAAAAACACCAATGGACTCAACCATGCTTGAGGTAGGTACATTGTTAACAAGGTGAAAGGTGAATAGAGAAGGCTATCTTGTTCATGTAGAATTTTGGTCTTCTATATGTATATGTAAAAGTGTGAACTTTTTACTTTTAAGAATGTCACTTTCTATGAATACACGAGTGAAATGATATTTTGAT</gDNA_template>
            <first_frame> K  R  R  N  R  P  Q  L  I  M  A  I  L  M  P  T  F  Q  I  L  T  G  I  N  I  I  L  F  Y  A  P  V  L  F  Q  S  M  G  F  K  R  A  A  S  L  Y  S  S  A  L  T  G  A  V  L  A  S  S  T  L  L  S  M  A  T  V  D  R  W  G  R  R  V  L  L  I  T  G  G  I  Q  M  I  I  C  Q  :  V  I  V  A  I  I  L  G  L  K  F  G  S  D  K  E  L  S  R  G  Y  S  I  I  V  V  V  F  I  C  L  F  V  A  A  F  G  Y  S  W  G  P  L  G  W  T  V  P  S  E  I  F  P  L  E  T  R  S  A  G  Q  S  I  T  V  T  V  N  L  F  F  T  F  A  I  A  Q  S  F  L  S  L  L  C  A  M  R  F  G  I  F  L  F  F  S  C  W  I  A  V  M  T  I  F  I  Y  L  F  L  P  E  T  K  G  V  P  I  E  E  M  M  R  L  W  E  K  H  W  F  W  K  K  I  V  S  E  D  Q  Q  V  K  N  T  N  G  L  N  H  A  *  G  R  Y  I  V  N  K  V  K  G  E  *  R  R  L  S  C  S  C  R  I  L  V  F  Y  M  Y  M  *  K  C  E  L  F  T  F  K  N  V  T  F  Y  E  Y  T  S  E  M  I  F  *  </first_frame>
            <second_frame>  K  G  E  T  G  L  S  *  S  W  R  F  *  C  R  L  F  R  Y  L  L  A  L  T  S  Y  F  F  M  P  Q  Y  C  F  R  V  W  G  L  K  E  Q  P  L  C  I  P  L  L  *  L  V  Q  F  L  L  H  L  H  F  Y  Q  W  P  L  S  I  D  G  V  E  E  F  F  L  L  P  V  E  S  K  *  S  S  V  R :   L  L  L  R  *  S  W  D  S  N  L  E  V  T  R  S  Y  Q  E  V  T  R  L  *  *  L  F  S  F  A  S  L  *  R  R  L  D  T  H  G  G  L  L  D  G  P  C  Q  V  K  F  S  L  *  R  R  D  Q  Q  A  K  V  S  Q  L  L  *  I  C  S  S  H  L  R  *  H  S  L  S  S  H  F  Y  V  L  *  G  S  G  F  S  C  F  S  P  V  G  L  L  S  *  R  Y  S  S  I  C  S  C  L  K  R  R  E  F  R  L  K  R  *  C  V  F  G  K  S  I  G  S  G  R  R  S  F  R  R  I  N  K  L  K  T  P  M  D  S  T  M  L  E  V  G  T  L  L  T  R  *  K  V  N  R  E  G  Y  L  V  H  V  E  F  W  S  S  I  C  I  C  K  S  V  N  F  L  L  L  R  M  S  L  S  M  N  T  R  V  K  *  Y  F  D </second_frame>
            <third_frame>   K  E  K  Q  A  S  V  N  H  G  D  F  D  A  D  F  S  D  T  Y  W  H  *  H  H  T  F  L  C  P  S  I  V  S  E  Y  G  V  *  K  S  S  L  S  V  F  L  C  F  D  W  C  S  S  C  F  I  Y  T  F  I  N  G  H  C  R  *  M  G  S  K  S  S  S  Y  Y  R  W  N  P  N  D  H  L  S   : G  Y  C  C  D  N  L  G  T  Q  I  W  K  *  Q  G  A  I  K  R  L  L  D  Y  S  S  C  F  H  L  P  L  C  S  G  V  W  I  L  M  G  A  S  W  M  D  R  A  K  *  N  F  P  F  R  D  E  I  S  R  P  K  Y  H  S  Y  C  E  F  V  L  H  I  C  D  S  T  V  F  P  L  T  F  M  C  Y  E  V  R  D  F  P  V  F  L  L  L  D  C  C  H  D  D  I  H  L  S  V  L  A  *  N  E  G  S  S  D  *  R  D  D  A  S  L  G  K  A  L  V  L  E  E  D  R  F  G  G  S  T  S  *  K  H  Q  W  T  Q  P  C  L  R  *  V  H  C  *  Q  G  E  R  *  I  E  K  A  I  L  F  M  *  N  F  G  L  L  Y  V  Y  V  K  V  *  T  F  Y  F  *  E  C  H  F  L  *  I  H  E  *  N  D  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47041" stop="46784"/>
                    <exon start="46294" stop="45845"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRRNRPQLIMAILMPTFQILTGINIILFYAPVLFQSMGFKRAASLYSSALTGAVLASSTLLSMATVDRWGRRVLLITGGIQMIICQVIVAIILGLKFGSDKELSRGYSIIVVVFICLFVAAFGYSWGPLGWTVPSEIFPLETRSAGQSITVTVNLFFTFAIAQSFLSLLCAMRFGIFLFFSCWIAVMTIFIYLFLPETKGVPIEEMMRLWEKHWFWKKIVSEDQQVKNTNGLNHA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="49723" PGL_stop="47912"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49723" e_stop="49468"/>
            <exon e_start="48187" e_stop="47912"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.988" e_score="0.911"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="49723" e_stop="49468" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.988">
            <gDNA_intron_boundary i_start="49467" i_stop="48188" i_length="1280"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="48187" e_stop="47912" e_length="276"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49723" stop="49468"/>
              <exon start="48187" stop="47912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49703" stop="49468"/>
              <exon start="48187" stop="47953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406493" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAGAAAGAGGGGAATGTACATAATATTAATAAGAAAATTTTTAACAAAATTTCTCTGTTTTTGATTCAGAGTTTTATTATTATTATTATTATTTTCAAGAAATTGAAGATGGCAGGAGGAGGAATTGGTTCAACTGGTGTAAACAAAGGAAGAGCTGAAAATTACAATGGAAAACTCACTCTTTATGTCATCATAGCATGTATTGTTGCTGCTGTTGGAGGTTCACTCTTTGGATATGATATTGGAATTTCAG : GGGGGGTGACGTCGATGGATGAATTTCTTCGTCGATTCTTCTACTCAGTATACCTAAAGAAGCAGCACGTTCACGAAGACAACTATTGCAAGTATAATAACCAAGTTCTTGCTGCATTTACCTCGTCTTTATACATGGCTGGTTTAGTTGCATCTCTGGTAGCATCTCCTATCACAAGGAACTATGGACGTCGTGCAAGTATAATATGCGGTGGCATTAGTTTCTTCATTGGAGCAGTTCTCAATGCCGCTGCTGTCAACCTTGGCATGCTTCTTT</gDNA_template>
            <first_frame> K  K  K  E  G  N  V  H  N  I  N  K  K  I  F  N  K  I  S  L  F  L  I  Q  S  F  I  I  I  I  I  I  F  K  K  L  K  M  A  G  G  G  I  G  S  T  G  V  N  K  G  R  A  E  N  Y  N  G  K  L  T  L  Y  V  I  I  A  C  I  V  A  A  V  G  G  S  L  F  G  Y  D  I  G  I  S   : G  G  V  T  S  M  D  E  F  L  R  R  F  F  Y  S  V  Y  L  K  K  Q  H  V  H  E  D  N  Y  C  K  Y  N  N  Q  V  L  A  A  F  T  S  S  L  Y  M  A  G  L  V  A  S  L  V  A  S  P  I  T  R  N  Y  G  R  R  A  S  I  I  C  G  G  I  S  F  F  I  G  A  V  L  N  A  A  A  V  N  L  G  M  L  L  </first_frame>
            <second_frame>  K  R  K  R  G  M  Y  I  I  L  I  R  K  F  L  T  K  F  L  C  F  *  F  R  V  L  L  L  L  L  L  F  S  R  N  *  R  W  Q  E  E  E  L  V  Q  L  V  *  T  K  E  E  L  K  I  T  M  E  N  S  L  F  M  S  S  *  H  V  L  L  L  L  L  E  V  H  S  L  D  M  I  L  E  F  Q  :  G  G  *  R  R  W  M  N  F  F  V  D  S  S  T  Q  Y  T  *  R  S  S  T  F  T  K  T  T  I  A  S  I  I  T  K  F  L  L  H  L  P  R  L  Y  T  W  L  V  *  L  H  L  W  *  H  L  L  S  Q  G  T  M  D  V  V  Q  V  *  Y  A  V  A  L  V  S  S  L  E  Q  F  S  M  P  L  L  S  T  L  A  C  F  F </second_frame>
            <third_frame>   K  E  R  G  E  C  T  *  Y  *  *  E  N  F  *  Q  N  F  S  V  F  D  S  E  F  Y  Y  Y  Y  Y  Y  F  Q  E  I  E  D  G  R  R  R  N  W  F  N  W  C  K  Q  R  K  S  *  K  L  Q  W  K  T  H  S  L  C  H  H  S  M  Y  C  C  C  C  W  R  F  T  L  W  I  *  Y  W  N  F  R :   G  G  D  V  D  G  *  I  S  S  S  I  L  L  L  S  I  P  K  E  A  A  R  S  R  R  Q  L  L  Q  V  *  *  P  S  S  C  C  I  Y  L  V  F  I  H  G  W  F  S  C  I  S  G  S  I  S  Y  H  K  E  L  W  T  S  C  K  Y  N  M  R  W  H  *  F  L  H  W  S  S  S  Q  C  R  C  C  Q  P  W  H  A  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49723" stop="49468"/>
                    <exon start="48187" stop="47913"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKEGNVHNINKKIFNKISLFLIQSFIIIIIIFKKLKMAGGGIGSTGVNKGRAENYNGKLTLYVIIACIVAAVGGSLFGYDIGISGGVTSMDEFLRRFFYSVYLKKQHVHEDNYCKYNNQVLAAFTSSLYMAGLVASLVASPITRNYGRRASIICGGISFFIGAVLNAAAVNLGMLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="77792" PGL_stop="77208"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77792" e_stop="77208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="77792" e_stop="77208" e_length="585"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77792" stop="77208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447923" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77680" stop="77208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422635" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAGTTTTGGGTGCAGGCACCCTTCCTTTCGGTACTCTGTTCATTGAGCTCTTCTTCATCATGTCAAGTCTCTGGATGGGTCGTGTCTACTATGTCTTTGGCTTCCTCCTCATTGTCATGATCCTTCTCGTCGTTGTCTGTGCTGAGGTGTCTCTTGTTCTTACTTACATGCATCTTTGTGTGGAGGACTGGAAATGGTGGTGGAAATCCTTCTTTGCCTCCGGATCAGTTGCTATATACATTTTCCTCTATTCCGTTAACTATCTAATCTTCGATCTCAAGAGCTTGAGCGGGCCTGTTTCTGCTACCCTTTACCTTGGATATTCCCTCTTTATGGTACTTGCCATCATGCTCGCGACAGGCACAGTCGGGTTTCTTTCCTCCTTCTGGTTTGTACATTACTTGTTCTCTTCAGTGAAGCTGGATTAAAGAAGTCTCTTATGATATAAAGAAACAAAAGAACCATTGAAGAACAGCCGCGGATGTGTCTTTAAGTCATTCTTGTTTACTTTTTATTGTCATATTACTATCATTTTGTAGGGTATTTGGAAGAGAAAGCCAATAAACTCCTCAAGTTTTGTTAA</gDNA_template>
            <first_frame> F  S  F  G  C  R  H  P  S  F  R  Y  S  V  H  *  A  L  L  H  H  V  K  S  L  D  G  S  C  L  L  C  L  W  L  P  P  H  C  H  D  P  S  R  R  C  L  C  *  G  V  S  C  S  Y  L  H  A  S  L  C  G  G  L  E  M  V  V  E  I  L  L  C  L  R  I  S  C  Y  I  H  F  P  L  F  R  *  L  S  N  L  R  S  Q  E  L  E  R  A  C  F  C  Y  P  L  P  W  I  F  P  L  Y  G  T  C  H  H  A  R  D  R  H  S  R  V  S  F  L  L  L  V  C  T  L  L  V  L  F  S  E  A  G  L  K  K  S  L  M  I  *  R  N  K  R  T  I  E  E  Q  P  R  M  C  L  *  V  I  L  V  Y  F  L  L  S  Y  Y  Y  H  F  V  G  Y  L  E  E  K  A  N  K  L  L  K  F  C  * </first_frame>
            <second_frame>  L  V  L  G  A  G  T  L  P  F  G  T  L  F  I  E  L  F  F  I  M  S  S  L  W  M  G  R  V  Y  Y  V  F  G  F  L  L  I  V  M  I  L  L  V  V  V  C  A  E  V  S  L  V  L  T  Y  M  H  L  C  V  E  D  W  K  W  W  W  K  S  F  F  A  S  G  S  V  A  I  Y  I  F  L  Y  S  V  N  Y  L  I  F  D  L  K  S  L  S  G  P  V  S  A  T  L  Y  L  G  Y  S  L  F  M  V  L  A  I  M  L  A  T  G  T  V  G  F  L  S  S  F  W  F  V  H  Y  L  F  S  S  V  K  L  D  *  R  S  L  L  *  Y  K  E  T  K  E  P  L  K  N  S  R  G  C  V  F  K  S  F  L  F  T  F  Y  C  H  I  T  I  I  L  *  G  I  W  K  R  K  P  I  N  S  S  S  F  V   </second_frame>
            <third_frame>   *  F  W  V  Q  A  P  F  L  S  V  L  C  S  L  S  S  S  S  S  C  Q  V  S  G  W  V  V  S  T  M  S  L  A  S  S  S  L  S  *  S  F  S  S  L  S  V  L  R  C  L  L  F  L  L  T  C  I  F  V  W  R  T  G  N  G  G  G  N  P  S  L  P  P  D  Q  L  L  Y  T  F  S  S  I  P  L  T  I  *  S  S  I  S  R  A  *  A  G  L  F  L  L  P  F  T  L  D  I  P  S  L  W  Y  L  P  S  C  S  R  Q  A  Q  S  G  F  F  P  P  S  G  L  Y  I  T  C  S  L  Q  *  S  W  I  K  E  V  S  Y  D  I  K  K  Q  K  N  H  *  R  T  A  A  D  V  S  L  S  H  S  C  L  L  F  I  V  I  L  L  S  F  C  R  V  F  G  R  E  S  Q  *  T  P  Q  V  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77791" stop="77363"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVLGAGTLPFGTLFIELFFIMSSLWMGRVYYVFGFLLIVMILLVVVCAEVSLVLTYMHLCVEDWKWWWKSFFASGSVAIYIFLYSVNYLIFDLKSLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSSVKLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="78576" PGL_stop="78108"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78576" e_stop="78108"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="78576" e_stop="78108" e_length="469"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78576" stop="78108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422636" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATGAGCCTGTTTCGTTTACTTATGAGGTGAACTTTGTGGAAAGTGACATTAAGTGGCCATCAAGATGGGATGCGTATTTGAAGATGGAAGGTGCAAAGGTGCACTGGTTCTCTATCCTTAACTCCCTTATGGTGATCACTTTCTTGGCTGGAATTGTGCTTGTAATCTTCTTGAGGACTGTCAGGCGGGATCTTACAAGGTATGAGGAACTTGACAAAGAGGCTCAAGCTCAGATGAATGAGGAGTTATCCGGGTGGAAACTTGTGGTGAGTGATGTTTTCAGGGCTCCAAGTAATCCAGCACTTTTGTGTGCGATGGTTGGAGATGGGGTTCAAATTCTAGGGATGGGTGTTGTGACTATCATGTTTGCTGCCCTCGGATTTATGTCCCCAGCTTCTCGTGGAACATTGATTACTGGTATGCTATTCTTCTATATGATTCTTGGTATTGCAGCTGGTTATGTTGC</gDNA_template>
            <first_frame> K  M  S  L  F  R  L  L  M  R  *  T  L  W  K  V  T  L  S  G  H  Q  D  G  M  R  I  *  R  W  K  V  Q  R  C  T  G  S  L  S  L  T  P  L  W  *  S  L  S  W  L  E  L  C  L  *  S  S  *  G  L  S  G  G  I  L  Q  G  M  R  N  L  T  K  R  L  K  L  R  *  M  R  S  Y  P  G  G  N  L  W  *  V  M  F  S  G  L  Q  V  I  Q  H  F  C  V  R  W  L  E  M  G  F  K  F  *  G  W  V  L  *  L  S  C  L  L  P  S  D  L  C  P  Q  L  L  V  E  H  *  L  L  V  C  Y  S  S  I  *  F  L  V  L  Q  L  V  M  L  </first_frame>
            <second_frame>  K  *  A  C  F  V  Y  L  *  G  E  L  C  G  K  *  H  *  V  A  I  K  M  G  C  V  F  E  D  G  R  C  K  G  A  L  V  L  Y  P  *  L  P  Y  G  D  H  F  L  G  W  N  C  A  C  N  L  L  E  D  C  Q  A  G  S  Y  K  V  *  G  T  *  Q  R  G  S  S  S  D  E  *  G  V  I  R  V  E  T  C  G  E  *  C  F  Q  G  S  K  *  S  S  T  F  V  C  D  G  W  R  W  G  S  N  S  R  D  G  C  C  D  Y  H  V  C  C  P  R  I  Y  V  P  S  F  S  W  N  I  D  Y  W  Y  A  I  L  L  Y  D  S  W  Y  C  S  W  L  C  C </second_frame>
            <third_frame>   N  E  P  V  S  F  T  Y  E  V  N  F  V  E  S  D  I  K  W  P  S  R  W  D  A  Y  L  K  M  E  G  A  K  V  H  W  F  S  I  L  N  S  L  M  V  I  T  F  L  A  G  I  V  L  V  I  F  L  R  T  V  R  R  D  L  T  R  Y  E  E  L  D  K  E  A  Q  A  Q  M  N  E  E  L  S  G  W  K  L  V  V  S  D  V  F  R  A  P  S  N  P  A  L  L  C  A  M  V  G  D  G  V  Q  I  L  G  M  G  V  V  T  I  M  F  A  A  L  G  F  M  S  P  A  S  R  G  T  L  I  T  G  M  L  F  F  Y  M  I  L  G  I  A  A  G  Y  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78574" stop="78110"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NEPVSFTYEVNFVESDIKWPSRWDAYLKMEGAKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVSDVFRAPSNPALLCAMVGDGVQILGMGVVTIMFAALGFMSPASRGTLITGMLFFYMILGIAAGYV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="81752" PGL_stop="82239"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81752" e_stop="82239"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="81752" e_stop="82239" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81752" stop="82239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421224" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGGAAATATGAACATTTCTTTCCACAGTTGAAAGATATTATGTGATTTTTTTTCTTCTAACTTTTGGCACCTAATCCTTGCGATTTAGGACGTCTAACAGCAACTAAAGGATTGGTTATGCCTTGTGAACTTCTACCAAGTCCCATACCTTCAACAAAACCCATCTTTGCCATAATCTTTGATCCAAACCCCTTTGTGTGTCTCTCAAATCCTGCAAATCCAACAGATGACTCCTTCCTGATGGATTTCCCACTTCCACCGACAACTTCAGCACCACGACCAGATGATTTGGGTAGAGAATCCTTCTTTCCTGATGATCTAATACTTGTTTCTGGGATTTCAGCTCCCAATCCAAGAGCTTTTGGTCGTTGGCGAGCTTCGATGGGCTCAGAAATACCCTGTCCATCTTTCCCTAAGCCTCTGCCTTCTTGATAACCCATTTTTGCCATGAGTTTTGAGCCAATACCTGTAGTGTGCATCTCGAAT</gDNA_template>
            <first_frame> M  G  N  M  N  I  S  F  H  S  *  K  I  L  C  D  F  F  S  S  N  F  W  H  L  I  L  A  I  *  D  V  *  Q  Q  L  K  D  W  L  C  L  V  N  F  Y  Q  V  P  Y  L  Q  Q  N  P  S  L  P  *  S  L  I  Q  T  P  L  C  V  S  Q  I  L  Q  I  Q  Q  M  T  P  S  *  W  I  S  H  F  H  R  Q  L  Q  H  H  D  Q  M  I  W  V  E  N  P  S  F  L  M  I  *  Y  L  F  L  G  F  Q  L  P  I  Q  E  L  L  V  V  G  E  L  R  W  A  Q  K  Y  P  V  H  L  S  L  S  L  C  L  L  D  N  P  F  L  P  *  V  L  S  Q  Y  L  *  C  A  S  R   </first_frame>
            <second_frame>  W  E  I  *  T  F  L  S  T  V  E  R  Y  Y  V  I  F  F  L  L  T  F  G  T  *  S  L  R  F  R  T  S  N  S  N  *  R  I  G  Y  A  L  *  T  S  T  K  S  H  T  F  N  K  T  H  L  C  H  N  L  *  S  K  P  L  C  V  S  L  K  S  C  K  S  N  R  *  L  L  P  D  G  F  P  T  S  T  D  N  F  S  T  T  T  R  *  F  G  *  R  I  L  L  S  *  *  S  N  T  C  F  W  D  F  S  S  Q  S  K  S  F  W  S  L  A  S  F  D  G  L  R  N  T  L  S  I  F  P  *  A  S  A  F  L  I  T  H  F  C  H  E  F  *  A  N  T  C  S  V  H  L  E  </second_frame>
            <third_frame>   G  K  Y  E  H  F  F  P  Q  L  K  D  I  M  *  F  F  F  F  *  L  L  A  P  N  P  C  D  L  G  R  L  T  A  T  K  G  L  V  M  P  C  E  L  L  P  S  P  I  P  S  T  K  P  I  F  A  I  I  F  D  P  N  P  F  V  C  L  S  N  P  A  N  P  T  D  D  S  F  L  M  D  F  P  L  P  P  T  T  S  A  P  R  P  D  D  L  G  R  E  S  F  F  P  D  D  L  I  L  V  S  G  I  S  A  P  N  P  R  A  F  G  R  W  R  A  S  M  G  S  E  I  P  C  P  S  F  P  K  P  L  P  S  *  *  P  I  F  A  M  S  F  E  P  I  P  V  V  C  I  S  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81814" stop="82185"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLAPNPCDLGRLTATKGLVMPCELLPSPIPSTKPIFAIIFDPNPFVCLSNPANPTDDSFLMDFPLPPTTSAPRPDDLGRESFFPDDLILVSGISAPNPRAFGRWRASMGSEIPCPSFPKPLPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="85629" PGL_stop="81794"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85629" e_stop="85221"/>
            <exon e_start="84969" e_stop="84878"/>
            <exon e_start="83736" e_stop="83662"/>
            <exon e_start="83170" e_stop="83109"/>
            <exon e_start="82781" e_stop="82712"/>
            <exon e_start="82577" e_stop="81794"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.386" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.898" e_score="1.000"/>
          <exon-intron don_prob="0.633" acc_prob="0.687" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85629" e_stop="85221" e_length="409"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.991">
            <gDNA_intron_boundary i_start="85220" i_stop="84970" i_length="251"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84969" e_stop="84878" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.386" acc_prob="0.956">
            <gDNA_intron_boundary i_start="84877" i_stop="83737" i_length="1141"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83736" e_stop="83662" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.942" acc_prob="0.955">
            <gDNA_intron_boundary i_start="83661" i_stop="83171" i_length="491"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83170" e_stop="83109" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.898">
            <gDNA_intron_boundary i_start="83108" i_stop="82782" i_length="327"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="82781" e_stop="82712" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.633" acc_prob="0.687">
            <gDNA_intron_boundary i_start="82711" i_stop="82578" i_length="134"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="82577" e_stop="81794" e_length="784"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85629" stop="85221"/>
              <exon start="84969" stop="84878"/>
              <exon start="83736" stop="83662"/>
              <exon start="83170" stop="83140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85629" stop="85221"/>
              <exon start="84969" stop="84878"/>
              <exon start="83736" stop="83662"/>
              <exon start="83170" stop="83141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85551" stop="85221"/>
              <exon start="84969" stop="84878"/>
              <exon start="83736" stop="83662"/>
              <exon start="83170" stop="83141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85424" stop="85221"/>
              <exon start="84969" stop="84878"/>
              <exon start="83736" stop="83662"/>
              <exon start="83170" stop="83136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84958" stop="84878"/>
              <exon start="83736" stop="83662"/>
              <exon start="83170" stop="83109"/>
              <exon start="82781" stop="82712"/>
              <exon start="82577" stop="82181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83153" stop="83109"/>
              <exon start="82781" stop="82712"/>
              <exon start="82577" stop="82505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82564" stop="81848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82563" stop="81999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82563" stop="82001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82381" stop="81794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294007" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAATGATGGGTCATCTGATAGTGATTCAGATGTTGATGAAGAGGTTGCTGCAGATTATTATGAAGGAACTGGTGGGCTGTGCAAAGTAATTGATGTTAGACAGTTGGTTGGACAAGTTCCTAGTAGCTGCTCTGATGATAGCTTAGACGAAACCGTAGAGAAGTTGGGTGGGATTCATCTTCAGGAAGCCTCTAGGGTGTATGGAATGAAGAAGCCTAAAAAAGAGAGAAAGTTCCGAGGAGGTCAGAAATCTCCTTCTGCCAAGCAAGCCCAGGGATCTGATTTGGATGGCCTTGTTTTTGTAAAGGACCCGAGAACAGTTTCAGGGAAAAAGAAACATGCTGCTAAATTTCCTCAGTCATGGCCGTTTGAGTCTCAAAAGAGTAAAAATTTCGGGAGGTTTCCAG : GTGCTAAGAAGAAACATCGCAAGGAGATGATGGCTGTGAAGCGTCGAGAGAGAATGCTACACCGAGGTGTTGATCTTCAGAAGATAAATTTA : AAATTACACCAGATGGTTTTGGATGGAGCTGATATGTTATCTTTCCAACCTATGCATTCGCGTGATTGTTCTCAG : GTTCAGAGATTAGCTGCAATATACCGCCTGCGAAGTGGTTGTCAAGGTTCTGGCAAGAAGAG : GTTTGTGACAGTTACCAAGACACAGCATACGGCTATGCCATCCCCCAGTGATAAAATTCGTTTGGAGAAG : TTGATAGGAGCCGGTGACGAGGATTCTGATTTCACAGTCACGGGTATACAAAGTTATAGAAAGGATGTAAATGCAGCCAAAAACTCTTCAAAGGGTAGTGGTGGACAATCTGGCCCAAGCAATTTGTTTAAAATGCCGATAAATCCACGTGGGCAAAAAGACAGCAGCAAGAAACGAAGGGATCAGAAAACAGTCTCCTATGCTCTTCCTGTCTCCTTTGTTTCAAGTGGTATCATGCGTTCAGAGACAGAAGTTGAGGAGAAATCAATCGAAACAACCCAGACAACCACCATTGTCCATGAAACAAAGGTTGTGACCAACTCAGTCGAATACGGTGCATTCGAGATGCACACTACAGGTATTGGCTCAAAACTCATGGCAAAAATGGGTTATCAAGAAGGCAGAGGCTTAGGGAAAGATGGACAGGGTATTTCTGAGCCCATCGAAGCTCGCCAACGACCAAAAGCTCTTGGATTGGGAGCTGAAATCCCAGAAACAAGTATTAGATCATCAGGAAAGAAGGATTCTCTACCCAAATCATCTGGTCGTGGTGCTGAAGTTGTCGGTGGAAGTGGGAAATCCATCAGGAAGGAGTCATCTGTTGGATTTGCAGGATTTGAGAGACACACAAAGGGGTTTGGATCAAAGATTATGGCAAAGATGGGTTTTGTTGAAGGTATGGGACTTGGTAGAAGTTCACAAGGCATAACCAATCCTTTAGTTGCTGTTAGACGTCCTAAATCGCAAGGATTAGGTGCCAAAAGTTAGAAGAAAAAAAATCACA</gDNA_template>
            <first_frame> E  N  D  G  S  S  D  S  D  S  D  V  D  E  E  V  A  A  D  Y  Y  E  G  T  G  G  L  C  K  V  I  D  V  R  Q  L  V  G  Q  V  P  S  S  C  S  D  D  S  L  D  E  T  V  E  K  L  G  G  I  H  L  Q  E  A  S  R  V  Y  G  M  K  K  P  K  K  E  R  K  F  R  G  G  Q  K  S  P  S  A  K  Q  A  Q  G  S  D  L  D  G  L  V  F  V  K  D  P  R  T  V  S  G  K  K  K  H  A  A  K  F  P  Q  S  W  P  F  E  S  Q  K  S  K  N  F  G  R  F  P   : G  A  K  K  K  H  R  K  E  M  M  A  V  K  R  R  E  R  M  L  H  R  G  V  D  L  Q  K  I  N  L  :  K  L  H  Q  M  V  L  D  G  A  D  M  L  S  F  Q  P  M  H  S  R  D  C  S  Q  :  V  Q  R  L  A  A  I  Y  R  L  R  S  G  C  Q  G  S  G  K  K  R :   F  V  T  V  T  K  T  Q  H  T  A  M  P  S  P  S  D  K  I  R  L  E  K  :  L  I  G  A  G  D  E  D  S  D  F  T  V  T  G  I  Q  S  Y  R  K  D  V  N  A  A  K  N  S  S  K  G  S  G  G  Q  S  G  P  S  N  L  F  K  M  P  I  N  P  R  G  Q  K  D  S  S  K  K  R  R  D  Q  K  T  V  S  Y  A  L  P  V  S  F  V  S  S  G  I  M  R  S  E  T  E  V  E  E  K  S  I  E  T  T  Q  T  T  T  I  V  H  E  T  K  V  V  T  N  S  V  E  Y  G  A  F  E  M  H  T  T  G  I  G  S  K  L  M  A  K  M  G  Y  Q  E  G  R  G  L  G  K  D  G  Q  G  I  S  E  P  I  E  A  R  Q  R  P  K  A  L  G  L  G  A  E  I  P  E  T  S  I  R  S  S  G  K  K  D  S  L  P  K  S  S  G  R  G  A  E  V  V  G  G  S  G  K  S  I  R  K  E  S  S  V  G  F  A  G  F  E  R  H  T  K  G  F  G  S  K  I  M  A  K  M  G  F  V  E  G  M  G  L  G  R  S  S  Q  G  I  T  N  P  L  V  A  V  R  R  P  K  S  Q  G  L  G  A  K  S  *  K  K  K  N  H  </first_frame>
            <second_frame>  K  M  M  G  H  L  I  V  I  Q  M  L  M  K  R  L  L  Q  I  I  M  K  E  L  V  G  C  A  K  *  L  M  L  D  S  W  L  D  K  F  L  V  A  A  L  M  I  A  *  T  K  P  *  R  S  W  V  G  F  I  F  R  K  P  L  G  C  M  E  *  R  S  L  K  K  R  E  S  S  E  E  V  R  N  L  L  L  P  S  K  P  R  D  L  I  W  M  A  L  F  L  *  R  T  R  E  Q  F  Q  G  K  R  N  M  L  L  N  F  L  S  H  G  R  L  S  L  K  R  V  K  I  S  G  G  F  Q  :  V  L  R  R  N  I  A  R  R  *  W  L  *  S  V  E  R  E  C  Y  T  E  V  L  I  F  R  R  *  I  * :   N  Y  T  R  W  F  W  M  E  L  I  C  Y  L  S  N  L  C  I  R  V  I  V  L  R :   F  R  D  *  L  Q  Y  T  A  C  E  V  V  V  K  V  L  A  R  R   : G  L  *  Q  L  P  R  H  S  I  R  L  C  H  P  P  V  I  K  F  V  W  R  S :   *  *  E  P  V  T  R  I  L  I  S  Q  S  R  V  Y  K  V  I  E  R  M  *  M  Q  P  K  T  L  Q  R  V  V  V  D  N  L  A  Q  A  I  C  L  K  C  R  *  I  H  V  G  K  K  T  A  A  R  N  E  G  I  R  K  Q  S  P  M  L  F  L  S  P  L  F  Q  V  V  S  C  V  Q  R  Q  K  L  R  R  N  Q  S  K  Q  P  R  Q  P  P  L  S  M  K  Q  R  L  *  P  T  Q  S  N  T  V  H  S  R  C  T  L  Q  V  L  A  Q  N  S  W  Q  K  W  V  I  K  K  A  E  A  *  G  K  M  D  R  V  F  L  S  P  S  K  L  A  N  D  Q  K  L  L  D  W  E  L  K  S  Q  K  Q  V  L  D  H  Q  E  R  R  I  L  Y  P  N  H  L  V  V  V  L  K  L  S  V  E  V  G  N  P  S  G  R  S  H  L  L  D  L  Q  D  L  R  D  T  Q  R  G  L  D  Q  R  L  W  Q  R  W  V  L  L  K  V  W  D  L  V  E  V  H  K  A  *  P  I  L  *  L  L  L  D  V  L  N  R  K  D  *  V  P  K  V  R  R  K  K  I  T </second_frame>
            <third_frame>   K  *  W  V  I  *  *  *  F  R  C  *  *  R  G  C  C  R  L  L  *  R  N  W  W  A  V  Q  S  N  *  C  *  T  V  G  W  T  S  S  *  *  L  L  *  *  *  L  R  R  N  R  R  E  V  G  W  D  S  S  S  G  S  L  *  G  V  W  N  E  E  A  *  K  R  E  K  V  P  R  R  S  E  I  S  F  C  Q  A  S  P  G  I  *  F  G  W  P  C  F  C  K  G  P  E  N  S  F  R  E  K  E  T  C  C  *  I  S  S  V  M  A  V  *  V  S  K  E  *  K  F  R  E  V  S  R :   C  *  E  E  T  S  Q  G  D  D  G  C  E  A  S  R  E  N  A  T  P  R  C  *  S  S  E  D  K  F   : K  I  T  P  D  G  F  G  W  S  *  Y  V  I  F  P  T  Y  A  F  A  *  L  F  S   : G  S  E  I  S  C  N  I  P  P  A  K  W  L  S  R  F  W  Q  E  E  :  V  C  D  S  Y  Q  D  T  A  Y  G  Y  A  I  P  Q  *  *  N  S  F  G  E   : V  D  R  S  R  *  R  G  F  *  F  H  S  H  G  Y  T  K  L  *  K  G  C  K  C  S  Q  K  L  F  K  G  *  W  W  T  I  W  P  K  Q  F  V  *  N  A  D  K  S  T  W  A  K  R  Q  Q  Q  E  T  K  G  S  E  N  S  L  L  C  S  S  C  L  L  C  F  K  W  Y  H  A  F  R  D  R  S  *  G  E  I  N  R  N  N  P  D  N  H  H  C  P  *  N  K  G  C  D  Q  L  S  R  I  R  C  I  R  D  A  H  Y  R  Y  W  L  K  T  H  G  K  N  G  L  S  R  R  Q  R  L  R  E  R  W  T  G  Y  F  *  A  H  R  S  S  P  T  T  K  S  S  W  I  G  S  *  N  P  R  N  K  Y  *  I  I  R  K  E  G  F  S  T  Q  I  I  W  S  W  C  *  S  C  R  W  K  W  E  I  H  Q  E  G  V  I  C  W  I  C  R  I  *  E  T  H  K  G  V  W  I  K  D  Y  G  K  D  G  F  C  *  R  Y  G  T  W  *  K  F  T  R  H  N  Q  S  F  S  C  C  *  T  S  *  I  A  R  I  R  C  Q  K  L  E  E  K  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85629" stop="85221"/>
                    <exon start="84969" stop="84878"/>
                    <exon start="83736" stop="83662"/>
                    <exon start="83170" stop="83109"/>
                    <exon start="82781" stop="82712"/>
                    <exon start="82577" stop="81810"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1473</number_coding_nucleotides>
                  <number_encoded_amino_acids>491</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENDGSSDSDSDVDEEVAADYYEGTGGLCKVIDVRQLVGQVPSSCSDDSLDETVEKLGGIHLQEASRVYGMKKPKKERKFRGGQKSPSAKQAQGSDLDGLVFVKDPRTVSGKKKHAAKFPQSWPFESQKSKNFGRFPGAKKKHRKEMMAVKRRERMLHRGVDLQKINLKLHQMVLDGADMLSFQPMHSRDCSQVQRLAAIYRLRSGCQGSGKKRFVTVTKTQHTAMPSPSDKIRLEKLIGAGDEDSDFTVTGIQSYRKDVNAAKNSSKGSGGQSGPSNLFKMPINPRGQKDSSKKRRDQKTVSYALPVSFVSSGIMRSETEVEEKSIETTQTTTIVHETKVVTNSVEYGAFEMHTTGIGSKLMAKMGYQEGRGLGKDGQGISEPIEARQRPKALGLGAEIPETSIRSSGKKDSLPKSSGRGAEVVGGSGKSIRKESSVGFAGFERHTKGFGSKIMAKMGFVEGMGLGRSSQGITNPLVAVRRPKSQGLGAKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="90092" PGL_stop="85855"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90092" e_stop="89796"/>
            <exon e_start="89697" e_stop="89540"/>
            <exon e_start="86229" e_stop="85855"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.929" acc_prob="0.999" e_score="0.886"/>
          <exon-intron don_prob="0.969" acc_prob="0.911" e_score="0.968"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.886">
            <gDNA_exon_boundary e_start="90092" e_stop="89796" e_length="297"/>
          </exon>
          <intron i_serial="1" don_prob="0.929" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89795" i_stop="89698" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="89697" e_stop="89540" e_length="158"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.911">
            <gDNA_intron_boundary i_start="89539" i_stop="86230" i_length="3310"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86229" e_stop="85855" e_length="375"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90092" stop="89796"/>
              <exon start="89697" stop="89550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89997" stop="89796"/>
              <exon start="89697" stop="89540"/>
              <exon start="86229" stop="86063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86104" stop="85855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737260" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTCATCACACTGAATTTAACCTCTTCACCGCCTTACCATTTTCACCTAAACTTTACAATAAAACAATCGAAAACTCACCACCGATCTCCGCCATCTGTCTCCGCCGTTCACGGCGTTTCGCCACTGTACACCGCCGAGTATGAGAAGCTGAATGAAATGGGAGGAAATAACAGAAAACGATCTAATAAACCTAAAACCCGGAAGCCTAGGAACCCGTCTTATTCGGGTCGGGGCTTGTTTGTTGAAGGCGGAGTCTTATCTGATTGGGGCGATTTCAATTCTCCTCCTTCAAGTG : GGAGAAATTTGAAGGGTGAATATGGAAATGGAAATGGCAATTCAAGGAATCGTAATGCAGCTGTTAGCAGCTCGATGAATGCTTCGAGTTCGAAAACTGAATTGAAGAAGAGTAGAGGAAGTGAGATCCGTTATGTATACCCATCTGCAGATTCAGTG : ATACGTTCAGATGCAGTATGTAGTGGAGGAGTAAAAGATGTCAAGTTGGATTCGGAACATCCTATTCTTTTGGTTGATACAAAGGAAACTCAAATTATTGCTTTCGTAGATGAAGGCCCAAATAAGGAACCTCAAAATCAGGGATGTATTTATGATTGCACAACCCCTTTATCTCTAGATGTTGGACAAAATAAAGATTCTAATGAAGTTGACTATGCTGGTGACTATAGTGCTGGTTTCTCACTGGATGAGAGTTCACACAGAGGATTGGGATTCTATGAAGAAGCAGAAATAACACATGGTGGAGTTGGATTGTCACCCAAGGATGAGAAGGAAAATCCTTCTTTTGAACATTCATTCTCTGACGAGGATATG</gDNA_template>
            <first_frame> T  S  S  H  *  I  *  P  L  H  R  L  T  I  F  T  *  T  L  Q  *  N  N  R  K  L  T  T  D  L  R  H  L  S  P  P  F  T  A  F  R  H  C  T  P  P  S  M  R  S  *  M  K  W  E  E  I  T  E  N  D  L  I  N  L  K  P  G  S  L  G  T  R  L  I  R  V  G  A  C  L  L  K  A  E  S  Y  L  I  G  A  I  S  I  L  L  L  Q  V  :  G  E  I  *  R  V  N  M  E  M  E  M  A  I  Q  G  I  V  M  Q  L  L  A  A  R  *  M  L  R  V  R  K  L  N  *  R  R  V  E  E  V  R  S  V  M  Y  T  H  L  Q  I  Q  * :   Y  V  Q  M  Q  Y  V  V  E  E  *  K  M  S  S  W  I  R  N  I  L  F  F  W  L  I  Q  R  K  L  K  L  L  L  S  *  M  K  A  Q  I  R  N  L  K  I  R  D  V  F  M  I  A  Q  P  L  Y  L  *  M  L  D  K  I  K  I  L  M  K  L  T  M  L  V  T  I  V  L  V  S  H  W  M  R  V  H  T  E  D  W  D  S  M  K  K  Q  K  *  H  M  V  E  L  D  C  H  P  R  M  R  R  K  I  L  L  L  N  I  H  S  L  T  R  I   </first_frame>
            <second_frame>  P  H  H  T  E  F  N  L  F  T  A  L  P  F  S  P  K  L  Y  N  K  T  I  E  N  S  P  P  I  S  A  I  C  L  R  R  S  R  R  F  A  T  V  H  R  R  V  *  E  A  E  *  N  G  R  K  *  Q  K  T  I  *  *  T  *  N  P  E  A  *  E  P  V  L  F  G  S  G  L  V  C  *  R  R  S  L  I  *  L  G  R  F  Q  F  S  S  F  K  W :   E  K  F  E  G  *  I  W  K  W  K  W  Q  F  K  E  S  *  C  S  C  *  Q  L  D  E  C  F  E  F  E  N  *  I  E  E  E  *  R  K  *  D  P  L  C  I  P  I  C  R  F  S   : D  T  F  R  C  S  M  *  W  R  S  K  R  C  Q  V  G  F  G  T  S  Y  S  F  G  *  Y  K  G  N  S  N  Y  C  F  R  R  *  R  P  K  *  G  T  S  K  S  G  M  Y  L  *  L  H  N  P  F  I  S  R  C  W  T  K  *  R  F  *  *  S  *  L  C  W  *  L  *  C  W  F  L  T  G  *  E  F  T  Q  R  I  G  I  L  *  R  S  R  N  N  T  W  W  S  W  I  V  T  Q  G  *  E  G  K  S  F  F  *  T  F  I  L  *  R  G  Y  </second_frame>
            <third_frame>   L  I  T  L  N  L  T  S  S  P  P  Y  H  F  H  L  N  F  T  I  K  Q  S  K  T  H  H  R  S  P  P  S  V  S  A  V  H  G  V  S  P  L  Y  T  A  E  Y  E  K  L  N  E  M  G  G  N  N  R  K  R  S  N  K  P  K  T  R  K  P  R  N  P  S  Y  S  G  R  G  L  F  V  E  G  G  V  L  S  D  W  G  D  F  N  S  P  P  S  S   : G  R  N  L  K  G  E  Y  G  N  G  N  G  N  S  R  N  R  N  A  A  V  S  S  S  M  N  A  S  S  S  K  T  E  L  K  K  S  R  G  S  E  I  R  Y  V  Y  P  S  A  D  S  V  :  I  R  S  D  A  V  C  S  G  G  V  K  D  V  K  L  D  S  E  H  P  I  L  L  V  D  T  K  E  T  Q  I  I  A  F  V  D  E  G  P  N  K  E  P  Q  N  Q  G  C  I  Y  D  C  T  T  P  L  S  L  D  V  G  Q  N  K  D  S  N  E  V  D  Y  A  G  D  Y  S  A  G  F  S  L  D  E  S  S  H  R  G  L  G  F  Y  E  E  A  E  I  T  H  G  G  V  G  L  S  P  K  D  E  K  E  N  P  S  F  E  H  S  F  S  D  E  D  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90090" stop="89796"/>
                    <exon start="89697" stop="89540"/>
                    <exon start="86229" stop="85855"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LITLNLTSSPPYHFHLNFTIKQSKTHHRSPPSVSAVHGVSPLYTAEYEKLNEMGGNNRKRSNKPKTRKPRNPSYSGRGLFVEGGVLSDWGDFNSPPSSGRNLKGEYGNGNGNSRNRNAAVSSSMNASSSKTELKKSRGSEIRYVYPSADSVIRSDAVCSGGVKDVKLDSEHPILLVDTKETQIIAFVDEGPNKEPQNQGCIYDCTTPLSLDVGQNKDSNEVDYAGDYSAGFSLDESSHRGLGFYEEAEITHGGVGLSPKDEKENPSFEHSFSDEDM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="95399" PGL_stop="95925"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95399" e_stop="95925"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="95399" e_stop="95925" e_length="527"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95399" stop="95878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95406" stop="95925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95522" stop="95890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95543" stop="95890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224560" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCTCTCTCCCTTCACGAGATTTATTTAATTGAAAAATGGCTACGGGAGCTGCCGGCGACGGCCTATTCCGGGGAGTATTCGACGGATGTATTTCCGGTCACGATATGGGGATTCAACAGAGACCGTACCACCGGAACTGTAGCTGTAAACTACATAAATCTCGTGGAAATTGCTCTCATTCTTCTCGTTGTACCAACGTATCTTACCCAATTCGAAGATCCTGGAGCGAAAGCTGTTTATCGTTGGCCGCCGGCGCTTACGCCGGTGCCTCCGGTCATTCATCGACGTGCTCTTCTCCGGCTTCCGGCGTCGGCGGGTCGGATCTCACCGGAAAGAAGAACTTGGTTCGTTCTACTAGTGATGAATATGACGACGTCGTTTTGTTTAAGGTTTGATTGAAATTATTTTTTGAATTAATATGATTAATTCATAAAGTACAAAATTATTGTAAACAATGATTCAAAAAATTGTTTATTTATTTATTTATTTATTTATTTTGGGGTTTTCGTGTTCATATATTAGAA</gDNA_template>
            <first_frame> I  S  L  S  L  H  E  I  Y  L  I  E  K  W  L  R  E  L  P  A  T  A  Y  S  G  E  Y  S  T  D  V  F  P  V  T  I  W  G  F  N  R  D  R  T  T  G  T  V  A  V  N  Y  I  N  L  V  E  I  A  L  I  L  L  V  V  P  T  Y  L  T  Q  F  E  D  P  G  A  K  A  V  Y  R  W  P  P  A  L  T  P  V  P  P  V  I  H  R  R  A  L  L  R  L  P  A  S  A  G  R  I  S  P  E  R  R  T  W  F  V  L  L  V  M  N  M  T  T  S  F  C  L  R  F  D  *  N  Y  F  L  N  *  Y  D  *  F  I  K  Y  K  I  I  V  N  N  D  S  K  N  C  L  F  I  Y  L  F  I  Y  F  G  V  F  V  F  I  Y  *   </first_frame>
            <second_frame>  F  L  S  P  F  T  R  F  I  *  L  K  N  G  Y  G  S  C  R  R  R  P  I  P  G  S  I  R  R  M  Y  F  R  S  R  Y  G  D  S  T  E  T  V  P  P  E  L  *  L  *  T  T  *  I  S  W  K  L  L  S  F  F  S  L  Y  Q  R  I  L  P  N  S  K  I  L  E  R  K  L  F  I  V  G  R  R  R  L  R  R  C  L  R  S  F  I  D  V  L  F  S  G  F  R  R  R  R  V  G  S  H  R  K  E  E  L  G  S  F  Y  *  *  *  I  *  R  R  R  F  V  *  G  L  I  E  I  I  F  *  I  N  M  I  N  S  *  S  T  K  L  L  *  T  M  I  Q  K  I  V  Y  L  F  I  Y  L  F  I  L  G  F  S  C  S  Y  I  R  </second_frame>
            <third_frame>   F  S  L  P  S  R  D  L  F  N  *  K  M  A  T  G  A  A  G  D  G  L  F  R  G  V  F  D  G  C  I  S  G  H  D  M  G  I  Q  Q  R  P  Y  H  R  N  C  S  C  K  L  H  K  S  R  G  N  C  S  H  S  S  R  C  T  N  V  S  Y  P  I  R  R  S  W  S  E  S  C  L  S  L  A  A  G  A  Y  A  G  A  S  G  H  S  S  T  C  S  S  P  A  S  G  V  G  G  S  D  L  T  G  K  K  N  L  V  R  S  T  S  D  E  Y  D  D  V  V  L  F  K  V  *  L  K  L  F  F  E  L  I  *  L  I  H  K  V  Q  N  Y  C  K  Q  *  F  K  K  L  F  I  Y  L  F  I  Y  L  F  W  G  F  R  V  H  I  L  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95399" stop="95800"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISLSLHEIYLIEKWLRELPATAYSGEYSTDVFPVTIWGFNRDRTTGTVAVNYINLVEIALILLVVPTYLTQFEDPGAKAVYRWPPALTPVPPVIHRRALLRLPASAGRISPERRTWFVLLVMNMTTSFCLRFD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95434" stop="95796"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMATGAAGDGLFRGVFDGCISGHDMGIQQRPYHRNCSCKLHKSRGNCSHSSRCTNVSYPIRRSWSESCLSLAAGAYAGASGHSSTCSSPASGVGGSDLTGKKNLVRSTSDEYDDVVLFKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="102708" PGL_stop="98971"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102708" e_stop="102441"/>
            <exon e_start="100377" e_stop="98971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.863" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102708" e_stop="102441" e_length="268"/>
          </exon>
          <intron i_serial="1" don_prob="0.863" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102440" i_stop="100378" i_length="2063"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="100377" e_stop="98971" e_length="1407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102708" stop="102441"/>
              <exon start="100377" stop="99929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102703" stop="102441"/>
              <exon start="100377" stop="100232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102608" stop="102441"/>
              <exon start="100377" stop="100055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102579" stop="102441"/>
              <exon start="100377" stop="99819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100191" stop="99698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99761" stop="98971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAAACCCAAGAAAGAATCTTCCCCAAAATCCATTGTGGCCGTCCCAATATATATACAGTTGGATTTTTGTTTTTTGCATCTCTCTGATTCCCTTTTATCTCTTCCCCCTTTTCCTCCCTTCTTATATAGGGTATATACCCCATATTATGCCTACAGCCTATATAGCATAAGCCACCATAGCTAAATTTGGTGAATTTGATGATTTGGGTCGGTTAAAAATCCAATCTTTATAATACCCTTTTGAAATCTCAGCTCAGATTTGTAAG : ATGGATACGCAGAATCTGGAACATGGACAAGTAATTGAGGTGAGTGTTGACATAACAGGTCAAGAGAAGGGGACTAAAATCTGTGGTTCAGGACCGTGTGGATTCTCAGATGTTAACACCATGTCTAAGGATGCACAGGAGAGATCAGCATCTATGAGGAAACTGTTCATTGCGGTTGTCCTATGCATCATTTTTATGGCTGTCGAGGTTGTCGGAGGTATTAAAGCCAACAGTCTTGCAATTTTGACGGATGCGGCTCATCTATTGTCAGATGTTGCAGCTTTTGCAATATCCTTGTTTTCACTCTGGGCATCAGGATGGGAGGCTAATCCACGCCAGTCCTATGGGTTTTTTAGAATTGAGATACTTGGGGCACTAGTTTCTATCCAAATGATATGGCTTCTAGCTGGGATCCTTGTTTACGAAGCCATTGCTCGACTTATACATGATACAGGTGAAGTTCAAGGTTTCCTCATGTTTGTGGTGTCTGCATTTGGATTAGGAGTGAACCTCATCATGGCACTCTTGCTAGGTCATGATCACGGCCACGGCCACGGCCATGGACACAGCCACGGTCATGACCACGGCCATGAACACAGTCATAGTCATGAAGAGCATGCTCATAGCCACGGTGATCATGAACATGCCCACGGTGAGCATAAACATATACATGGAATTAGTGTTAGCCGACACCATCACCATAATGAGGGACCTTCAAACCGAGATCAACACATCCATGCACACGACGCTGACAACACTGTGCCTCTACTTAAGGATTCCTGTGAGGGTGAAGGTGAAAAGAAAAAGAAGCAGCGGAATATAAATGTTCAGGGGGCTTATCTTCATGTATTAGGAGATTCTATTCAGAGCATAGGCGTCATGATTGGAGGAGCTATCATATGGTATAAACCAGAATGGAAAATCATTGATCCCATCTGCACTCTCATTTTCTCTGTCATTGTTCTTGCCACAACCATTAGGATGATTCGGAGTATTCTTGAAGTATTAATGGAGAGCACACCTAGAGAAATCGACGCAACAAGGCTTGAGAAGGGTCTTTGTGAGATGGAAGAGGTTGTTGCAATCCATGAATTGCATATTTGGGCGATTACAGTCGGGAAAGTACTCTTGGCTTGCCATGTCAAGATTAAACCTGATGCTGATGCTGACATGGTGCTGGATAAGGTTATCGATTATATTAGAAGGGAATATAACATTAGCCACGTTACCATTCAAATAGAAAGAGAGTAGTGTGGAGGTAAAGTTTGTTTGCCTGTTGTACTCGTCATTGGCTTCTATATTTTTTCGGATATTAGTTGAAACAGTAAAACATCATCTGGCTAAGCGATTCCAGTATCTGTTTCGTTTTAGTAAATCATGGTCTTTTAGCATGTTGGCTTGCTTTAC</gDNA_template>
            <first_frame> T  K  P  K  K  E  S  S  P  K  S  I  V  A  V  P  I  Y  I  Q  L  D  F  C  F  L  H  L  S  D  S  L  L  S  L  P  P  F  P  P  F  L  Y  R  V  Y  T  P  Y  Y  A  Y  S  L  Y  S  I  S  H  H  S  *  I  W  *  I  *  *  F  G  S  V  K  N  P  I  F  I  I  P  F  *  N  L  S  S  D  L  *   : D  G  Y  A  E  S  G  T  W  T  S  N  *  G  E  C  *  H  N  R  S  R  E  G  D  *  N  L  W  F  R  T  V  W  I  L  R  C  *  H  H  V  *  G  C  T  G  E  I  S  I  Y  E  E  T  V  H  C  G  C  P  M  H  H  F  Y  G  C  R  G  C  R  R  Y  *  S  Q  Q  S  C  N  F  D  G  C  G  S  S  I  V  R  C  C  S  F  C  N  I  L  V  F  T  L  G  I  R  M  G  G  *  S  T  P  V  L  W  V  F  *  N  *  D  T  W  G  T  S  F  Y  P  N  D  M  A  S  S  W  D  P  C  L  R  S  H  C  S  T  Y  T  *  Y  R  *  S  S  R  F  P  H  V  C  G  V  C  I  W  I  R  S  E  P  H  H  G  T  L  A  R  S  *  S  R  P  R  P  R  P  W  T  Q  P  R  S  *  P  R  P  *  T  Q  S  *  S  *  R  A  C  S  *  P  R  *  S  *  T  C  P  R  *  A  *  T  Y  T  W  N  *  C  *  P  T  P  S  P  *  *  G  T  F  K  P  R  S  T  H  P  C  T  R  R  *  Q  H  C  A  S  T  *  G  F  L  *  G  *  R  *  K  E  K  E  A  A  E  Y  K  C  S  G  G  L  S  S  C  I  R  R  F  Y  S  E  H  R  R  H  D  W  R  S  Y  H  M  V  *  T  R  M  E  N  H  *  S  H  L  H  S  H  F  L  C  H  C  S  C  H  N  H  *  D  D  S  E  Y  S  *  S  I  N  G  E  H  T  *  R  N  R  R  N  K  A  *  E  G  S  L  *  D  G  R  G  C  C  N  P  *  I  A  Y  L  G  D  Y  S  R  E  S  T  L  G  L  P  C  Q  D  *  T  *  C  *  C  *  H  G  A  G  *  G  Y  R  L  Y  *  K  G  I  *  H  *  P  R  Y  H  S  N  R  K  R  V  V  W  R  *  S  L  F  A  C  C  T  R  H  W  L  L  Y  F  F  G  Y  *  L  K  Q  *  N  I  I  W  L  S  D  S  S  I  C  F  V  L  V  N  H  G  L  L  A  C  W  L  A  L  </first_frame>
            <second_frame>  Q  N  P  R  K  N  L  P  Q  N  P  L  W  P  S  Q  Y  I  Y  S  W  I  F  V  F  C  I  S  L  I  P  F  Y  L  F  P  L  F  L  P  S  Y  I  G  Y  I  P  H  I  M  P  T  A  Y  I  A  *  A  T  I  A  K  F  G  E  F  D  D  L  G  R  L  K  I  Q  S  L  *  Y  P  F  E  I  S  A  Q  I  C  K  :  M  D  T  Q  N  L  E  H  G  Q  V  I  E  V  S  V  D  I  T  G  Q  E  K  G  T  K  I  C  G  S  G  P  C  G  F  S  D  V  N  T  M  S  K  D  A  Q  E  R  S  A  S  M  R  K  L  F  I  A  V  V  L  C  I  I  F  M  A  V  E  V  V  G  G  I  K  A  N  S  L  A  I  L  T  D  A  A  H  L  L  S  D  V  A  A  F  A  I  S  L  F  S  L  W  A  S  G  W  E  A  N  P  R  Q  S  Y  G  F  F  R  I  E  I  L  G  A  L  V  S  I  Q  M  I  W  L  L  A  G  I  L  V  Y  E  A  I  A  R  L  I  H  D  T  G  E  V  Q  G  F  L  M  F  V  V  S  A  F  G  L  G  V  N  L  I  M  A  L  L  L  G  H  D  H  G  H  G  H  G  H  G  H  S  H  G  H  D  H  G  H  E  H  S  H  S  H  E  E  H  A  H  S  H  G  D  H  E  H  A  H  G  E  H  K  H  I  H  G  I  S  V  S  R  H  H  H  H  N  E  G  P  S  N  R  D  Q  H  I  H  A  H  D  A  D  N  T  V  P  L  L  K  D  S  C  E  G  E  G  E  K  K  K  K  Q  R  N  I  N  V  Q  G  A  Y  L  H  V  L  G  D  S  I  Q  S  I  G  V  M  I  G  G  A  I  I  W  Y  K  P  E  W  K  I  I  D  P  I  C  T  L  I  F  S  V  I  V  L  A  T  T  I  R  M  I  R  S  I  L  E  V  L  M  E  S  T  P  R  E  I  D  A  T  R  L  E  K  G  L  C  E  M  E  E  V  V  A  I  H  E  L  H  I  W  A  I  T  V  G  K  V  L  L  A  C  H  V  K  I  K  P  D  A  D  A  D  M  V  L  D  K  V  I  D  Y  I  R  R  E  Y  N  I  S  H  V  T  I  Q  I  E  R  E  *  C  G  G  K  V  C  L  P  V  V  L  V  I  G  F  Y  I  F  S  D  I  S  *  N  S  K  T  S  S  G  *  A  I  P  V  S  V  S  F  *  *  I  M  V  F  *  H  V  G  L  L  Y </second_frame>
            <third_frame>   K  T  Q  E  R  I  F  P  K  I  H  C  G  R  P  N  I  Y  T  V  G  F  L  F  F  A  S  L  *  F  P  F  I  S  S  P  F  S  S  L  L  I  *  G  I  Y  P  I  L  C  L  Q  P  I  *  H  K  P  P  *  L  N  L  V  N  L  M  I  W  V  G  *  K  S  N  L  Y  N  T  L  L  K  S  Q  L  R  F  V  R :   W  I  R  R  I  W  N  M  D  K  *  L  R  *  V  L  T  *  Q  V  K  R  R  G  L  K  S  V  V  Q  D  R  V  D  S  Q  M  L  T  P  C  L  R  M  H  R  R  D  Q  H  L  *  G  N  C  S  L  R  L  S  Y  A  S  F  L  W  L  S  R  L  S  E  V  L  K  P  T  V  L  Q  F  *  R  M  R  L  I  Y  C  Q  M  L  Q  L  L  Q  Y  P  C  F  H  S  G  H  Q  D  G  R  L  I  H  A  S  P  M  G  F  L  E  L  R  Y  L  G  H  *  F  L  S  K  *  Y  G  F  *  L  G  S  L  F  T  K  P  L  L  D  L  Y  M  I  Q  V  K  F  K  V  S  S  C  L  W  C  L  H  L  D  *  E  *  T  S  S  W  H  S  C  *  V  M  I  T  A  T  A  T  A  M  D  T  A  T  V  M  T  T  A  M  N  T  V  I  V  M  K  S  M  L  I  A  T  V  I  M  N  M  P  T  V  S  I  N  I  Y  M  E  L  V  L  A  D  T  I  T  I  M  R  D  L  Q  T  E  I  N  T  S  M  H  T  T  L  T  T  L  C  L  Y  L  R  I  P  V  R  V  K  V  K  R  K  R  S  S  G  I  *  M  F  R  G  L  I  F  M  Y  *  E  I  L  F  R  A  *  A  S  *  L  E  E  L  S  Y  G  I  N  Q  N  G  K  S  L  I  P  S  A  L  S  F  S  L  S  L  F  L  P  Q  P  L  G  *  F  G  V  F  L  K  Y  *  W  R  A  H  L  E  K  S  T  Q  Q  G  L  R  R  V  F  V  R  W  K  R  L  L  Q  S  M  N  C  I  F  G  R  L  Q  S  G  K  Y  S  W  L  A  M  S  R  L  N  L  M  L  M  L  T  W  C  W  I  R  L  S  I  I  L  E  G  N  I  T  L  A  T  L  P  F  K  *  K  E  S  S  V  E  V  K  F  V  C  L  L  Y  S  S  L  A  S  I  F  F  R  I  L  V  E  T  V  K  H  H  L  A  K  R  F  Q  Y  L  F  R  F  S  K  S  W  S  F  S  M  L  A  C  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102473" stop="102441"/>
                    <exon start="100377" stop="99127"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1281</number_coding_nucleotides>
                  <number_encoded_amino_acids>427</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPFEISAQICKMDTQNLEHGQVIEVSVDITGQEKGTKICGSGPCGFSDVNTMSKDAQERSASMRKLFIAVVLCIIFMAVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEANPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIARLIHDTGEVQGFLMFVVSAFGLGVNLIMALLLGHDHGHGHGHGHSHGHDHGHEHSHSHEEHAHSHGDHEHAHGEHKHIHGISVSRHHHHNEGPSNRDQHIHAHDADNTVPLLKDSCEGEGEKKKKQRNINVQGAYLHVLGDSIQSIGVMIGGAIIWYKPEWKIIDPICTLIFSVIVLATTIRMIRSILEVLMESTPREIDATRLEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKIKPDADADMVLDKVIDYIRREYNISHVTIQIERE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="101865" e_stop="101665"/>
            <exon e_start="100377" e_stop="98971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.905"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="101865" e_stop="101665" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="101664" i_stop="100378" i_length="1287"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="100377" e_stop="98971" e_length="1407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101865" stop="101665"/>
              <exon start="100377" stop="99836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100191" stop="99698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99761" stop="98971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTTTAGCCTTACTTTTGGTCCTATCTTTGTTTTTGATGATGTGTGCTTATTTCTTAATGTACTTTAAACATTGGGTTGATAAAATATCATGATTTTCAGTGTATTTACATATACATATGCAGAGTTATATATCTGAAGTCTTTTTCAGTCTATAGGCTTTTCTTGCTGGTGTATAGGACATACTTATAGGGGTTAAG : ATGGATACGCAGAATCTGGAACATGGACAAGTAATTGAGGTGAGTGTTGACATAACAGGTCAAGAGAAGGGGACTAAAATCTGTGGTTCAGGACCGTGTGGATTCTCAGATGTTAACACCATGTCTAAGGATGCACAGGAGAGATCAGCATCTATGAGGAAACTGTTCATTGCGGTTGTCCTATGCATCATTTTTATGGCTGTCGAGGTTGTCGGAGGTATTAAAGCCAACAGTCTTGCAATTTTGACGGATGCGGCTCATCTATTGTCAGATGTTGCAGCTTTTGCAATATCCTTGTTTTCACTCTGGGCATCAGGATGGGAGGCTAATCCACGCCAGTCCTATGGGTTTTTTAGAATTGAGATACTTGGGGCACTAGTTTCTATCCAAATGATATGGCTTCTAGCTGGGATCCTTGTTTACGAAGCCATTGCTCGACTTATACATGATACAGGTGAAGTTCAAGGTTTCCTCATGTTTGTGGTGTCTGCATTTGGATTAGGAGTGAACCTCATCATGGCACTCTTGCTAGGTCATGATCACGGCCACGGCCACGGCCATGGACACAGCCACGGTCATGACCACGGCCATGAACACAGTCATAGTCATGAAGAGCATGCTCATAGCCACGGTGATCATGAACATGCCCACGGTGAGCATAAACATATACATGGAATTAGTGTTAGCCGACACCATCACCATAATGAGGGACCTTCAAACCGAGATCAACACATCCATGCACACGACGCTGACAACACTGTGCCTCTACTTAAGGATTCCTGTGAGGGTGAAGGTGAAAAGAAAAAGAAGCAGCGGAATATAAATGTTCAGGGGGCTTATCTTCATGTATTAGGAGATTCTATTCAGAGCATAGGCGTCATGATTGGAGGAGCTATCATATGGTATAAACCAGAATGGAAAATCATTGATCCCATCTGCACTCTCATTTTCTCTGTCATTGTTCTTGCCACAACCATTAGGATGATTCGGAGTATTCTTGAAGTATTAATGGAGAGCACACCTAGAGAAATCGACGCAACAAGGCTTGAGAAGGGTCTTTGTGAGATGGAAGAGGTTGTTGCAATCCATGAATTGCATATTTGGGCGATTACAGTCGGGAAAGTACTCTTGGCTTGCCATGTCAAGATTAAACCTGATGCTGATGCTGACATGGTGCTGGATAAGGTTATCGATTATATTAGAAGGGAATATAACATTAGCCACGTTACCATTCAAATAGAAAGAGAGTAGTGTGGAGGTAAAGTTTGTTTGCCTGTTGTACTCGTCATTGGCTTCTATATTTTTTCGGATATTAGTTGAAACAGTAAAACATCATCTGGCTAAGCGATTCCAGTATCTGTTTCGTTTTAGTAAATCATGGTCTTTTAGCATGTTGGCTTGCTTTAC</gDNA_template>
            <first_frame> F  L  L  A  L  L  L  V  L  S  L  F  L  M  M  C  A  Y  F  L  M  Y  F  K  H  W  V  D  K  I  S  *  F  S  V  Y  L  H  I  H  M  Q  S  Y  I  S  E  V  F  F  S  L  *  A  F  L  A  G  V  *  D  I  L  I  G  V  K  :  M  D  T  Q  N  L  E  H  G  Q  V  I  E  V  S  V  D  I  T  G  Q  E  K  G  T  K  I  C  G  S  G  P  C  G  F  S  D  V  N  T  M  S  K  D  A  Q  E  R  S  A  S  M  R  K  L  F  I  A  V  V  L  C  I  I  F  M  A  V  E  V  V  G  G  I  K  A  N  S  L  A  I  L  T  D  A  A  H  L  L  S  D  V  A  A  F  A  I  S  L  F  S  L  W  A  S  G  W  E  A  N  P  R  Q  S  Y  G  F  F  R  I  E  I  L  G  A  L  V  S  I  Q  M  I  W  L  L  A  G  I  L  V  Y  E  A  I  A  R  L  I  H  D  T  G  E  V  Q  G  F  L  M  F  V  V  S  A  F  G  L  G  V  N  L  I  M  A  L  L  L  G  H  D  H  G  H  G  H  G  H  G  H  S  H  G  H  D  H  G  H  E  H  S  H  S  H  E  E  H  A  H  S  H  G  D  H  E  H  A  H  G  E  H  K  H  I  H  G  I  S  V  S  R  H  H  H  H  N  E  G  P  S  N  R  D  Q  H  I  H  A  H  D  A  D  N  T  V  P  L  L  K  D  S  C  E  G  E  G  E  K  K  K  K  Q  R  N  I  N  V  Q  G  A  Y  L  H  V  L  G  D  S  I  Q  S  I  G  V  M  I  G  G  A  I  I  W  Y  K  P  E  W  K  I  I  D  P  I  C  T  L  I  F  S  V  I  V  L  A  T  T  I  R  M  I  R  S  I  L  E  V  L  M  E  S  T  P  R  E  I  D  A  T  R  L  E  K  G  L  C  E  M  E  E  V  V  A  I  H  E  L  H  I  W  A  I  T  V  G  K  V  L  L  A  C  H  V  K  I  K  P  D  A  D  A  D  M  V  L  D  K  V  I  D  Y  I  R  R  E  Y  N  I  S  H  V  T  I  Q  I  E  R  E  *  C  G  G  K  V  C  L  P  V  V  L  V  I  G  F  Y  I  F  S  D  I  S  *  N  S  K  T  S  S  G  *  A  I  P  V  S  V  S  F  *  *  I  M  V  F  *  H  V  G  L  L  Y </first_frame>
            <second_frame>  F  F  *  P  Y  F  W  S  Y  L  C  F  *  *  C  V  L  I  S  *  C  T  L  N  I  G  L  I  K  Y  H  D  F  Q  C  I  Y  I  Y  I  C  R  V  I  Y  L  K  S  F  S  V  Y  R  L  F  L  L  V  Y  R  T  Y  L  *  G  L  R :   W  I  R  R  I  W  N  M  D  K  *  L  R  *  V  L  T  *  Q  V  K  R  R  G  L  K  S  V  V  Q  D  R  V  D  S  Q  M  L  T  P  C  L  R  M  H  R  R  D  Q  H  L  *  G  N  C  S  L  R  L  S  Y  A  S  F  L  W  L  S  R  L  S  E  V  L  K  P  T  V  L  Q  F  *  R  M  R  L  I  Y  C  Q  M  L  Q  L  L  Q  Y  P  C  F  H  S  G  H  Q  D  G  R  L  I  H  A  S  P  M  G  F  L  E  L  R  Y  L  G  H  *  F  L  S  K  *  Y  G  F  *  L  G  S  L  F  T  K  P  L  L  D  L  Y  M  I  Q  V  K  F  K  V  S  S  C  L  W  C  L  H  L  D  *  E  *  T  S  S  W  H  S  C  *  V  M  I  T  A  T  A  T  A  M  D  T  A  T  V  M  T  T  A  M  N  T  V  I  V  M  K  S  M  L  I  A  T  V  I  M  N  M  P  T  V  S  I  N  I  Y  M  E  L  V  L  A  D  T  I  T  I  M  R  D  L  Q  T  E  I  N  T  S  M  H  T  T  L  T  T  L  C  L  Y  L  R  I  P  V  R  V  K  V  K  R  K  R  S  S  G  I  *  M  F  R  G  L  I  F  M  Y  *  E  I  L  F  R  A  *  A  S  *  L  E  E  L  S  Y  G  I  N  Q  N  G  K  S  L  I  P  S  A  L  S  F  S  L  S  L  F  L  P  Q  P  L  G  *  F  G  V  F  L  K  Y  *  W  R  A  H  L  E  K  S  T  Q  Q  G  L  R  R  V  F  V  R  W  K  R  L  L  Q  S  M  N  C  I  F  G  R  L  Q  S  G  K  Y  S  W  L  A  M  S  R  L  N  L  M  L  M  L  T  W  C  W  I  R  L  S  I  I  L  E  G  N  I  T  L  A  T  L  P  F  K  *  K  E  S  S  V  E  V  K  F  V  C  L  L  Y  S  S  L  A  S  I  F  F  R  I  L  V  E  T  V  K  H  H  L  A  K  R  F  Q  Y  L  F  R  F  S  K  S  W  S  F  S  M  L  A  C  F   </second_frame>
            <third_frame>   S  F  S  L  T  F  G  P  I  F  V  F  D  D  V  C  L  F  L  N  V  L  *  T  L  G  *  *  N  I  M  I  F  S  V  F  T  Y  T  Y  A  E  L  Y  I  *  S  L  F  Q  S  I  G  F  S  C  W  C  I  G  H  T  Y  R  G  *   : D  G  Y  A  E  S  G  T  W  T  S  N  *  G  E  C  *  H  N  R  S  R  E  G  D  *  N  L  W  F  R  T  V  W  I  L  R  C  *  H  H  V  *  G  C  T  G  E  I  S  I  Y  E  E  T  V  H  C  G  C  P  M  H  H  F  Y  G  C  R  G  C  R  R  Y  *  S  Q  Q  S  C  N  F  D  G  C  G  S  S  I  V  R  C  C  S  F  C  N  I  L  V  F  T  L  G  I  R  M  G  G  *  S  T  P  V  L  W  V  F  *  N  *  D  T  W  G  T  S  F  Y  P  N  D  M  A  S  S  W  D  P  C  L  R  S  H  C  S  T  Y  T  *  Y  R  *  S  S  R  F  P  H  V  C  G  V  C  I  W  I  R  S  E  P  H  H  G  T  L  A  R  S  *  S  R  P  R  P  R  P  W  T  Q  P  R  S  *  P  R  P  *  T  Q  S  *  S  *  R  A  C  S  *  P  R  *  S  *  T  C  P  R  *  A  *  T  Y  T  W  N  *  C  *  P  T  P  S  P  *  *  G  T  F  K  P  R  S  T  H  P  C  T  R  R  *  Q  H  C  A  S  T  *  G  F  L  *  G  *  R  *  K  E  K  E  A  A  E  Y  K  C  S  G  G  L  S  S  C  I  R  R  F  Y  S  E  H  R  R  H  D  W  R  S  Y  H  M  V  *  T  R  M  E  N  H  *  S  H  L  H  S  H  F  L  C  H  C  S  C  H  N  H  *  D  D  S  E  Y  S  *  S  I  N  G  E  H  T  *  R  N  R  R  N  K  A  *  E  G  S  L  *  D  G  R  G  C  C  N  P  *  I  A  Y  L  G  D  Y  S  R  E  S  T  L  G  L  P  C  Q  D  *  T  *  C  *  C  *  H  G  A  G  *  G  Y  R  L  Y  *  K  G  I  *  H  *  P  R  Y  H  S  N  R  K  R  V  V  W  R  *  S  L  F  A  C  C  T  R  H  W  L  L  Y  F  F  G  Y  *  L  K  Q  *  N  I  I  W  L  S  D  S  S  I  C  F  V  L  V  N  H  G  L  L  A  C  W  L  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101685" stop="101665"/>
                    <exon start="100377" stop="99127"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1269</number_coding_nucleotides>
                  <number_encoded_amino_acids>423</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DILIGVKMDTQNLEHGQVIEVSVDITGQEKGTKICGSGPCGFSDVNTMSKDAQERSASMRKLFIAVVLCIIFMAVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEANPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIARLIHDTGEVQGFLMFVVSAFGLGVNLIMALLLGHDHGHGHGHGHSHGHDHGHEHSHSHEEHAHSHGDHEHAHGEHKHIHGISVSRHHHHNEGPSNRDQHIHAHDADNTVPLLKDSCEGEGEKKKKQRNINVQGAYLHVLGDSIQSIGVMIGGAIIWYKPEWKIIDPICTLIFSVIVLATTIRMIRSILEVLMESTPREIDATRLEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKIKPDADADMVLDKVIDYIRREYNISHVTIQIERE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="102484" e_stop="102441"/>
            <exon e_start="101320" e_stop="101252"/>
            <exon e_start="100377" e_stop="98971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.863" acc_prob="0.508" e_score="0.977"/>
          <exon-intron don_prob="0.787" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="102484" e_stop="102441" e_length="44"/>
          </exon>
          <intron i_serial="1" don_prob="0.863" acc_prob="0.508">
            <gDNA_intron_boundary i_start="102440" i_stop="101321" i_length="1120"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101320" e_stop="101252" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.787" acc_prob="0.999">
            <gDNA_intron_boundary i_start="101251" i_stop="100378" i_length="874"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="100377" e_stop="98971" e_length="1407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102484" stop="102441"/>
              <exon start="101320" stop="101252"/>
              <exon start="100377" stop="99782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100191" stop="99698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99761" stop="98971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCTTTATAATACCCTTTTGAAATCTCAGCTCAGATTTGTAAG : GGAGTGGTTTTGGTCTCTTGGGTGCTGTTAATTGAGAGTTCAACTTGAGCTAGACTTCAGTTTGGAAAG : ATGGATACGCAGAATCTGGAACATGGACAAGTAATTGAGGTGAGTGTTGACATAACAGGTCAAGAGAAGGGGACTAAAATCTGTGGTTCAGGACCGTGTGGATTCTCAGATGTTAACACCATGTCTAAGGATGCACAGGAGAGATCAGCATCTATGAGGAAACTGTTCATTGCGGTTGTCCTATGCATCATTTTTATGGCTGTCGAGGTTGTCGGAGGTATTAAAGCCAACAGTCTTGCAATTTTGACGGATGCGGCTCATCTATTGTCAGATGTTGCAGCTTTTGCAATATCCTTGTTTTCACTCTGGGCATCAGGATGGGAGGCTAATCCACGCCAGTCCTATGGGTTTTTTAGAATTGAGATACTTGGGGCACTAGTTTCTATCCAAATGATATGGCTTCTAGCTGGGATCCTTGTTTACGAAGCCATTGCTCGACTTATACATGATACAGGTGAAGTTCAAGGTTTCCTCATGTTTGTGGTGTCTGCATTTGGATTAGGAGTGAACCTCATCATGGCACTCTTGCTAGGTCATGATCACGGCCACGGCCACGGCCATGGACACAGCCACGGTCATGACCACGGCCATGAACACAGTCATAGTCATGAAGAGCATGCTCATAGCCACGGTGATCATGAACATGCCCACGGTGAGCATAAACATATACATGGAATTAGTGTTAGCCGACACCATCACCATAATGAGGGACCTTCAAACCGAGATCAACACATCCATGCACACGACGCTGACAACACTGTGCCTCTACTTAAGGATTCCTGTGAGGGTGAAGGTGAAAAGAAAAAGAAGCAGCGGAATATAAATGTTCAGGGGGCTTATCTTCATGTATTAGGAGATTCTATTCAGAGCATAGGCGTCATGATTGGAGGAGCTATCATATGGTATAAACCAGAATGGAAAATCATTGATCCCATCTGCACTCTCATTTTCTCTGTCATTGTTCTTGCCACAACCATTAGGATGATTCGGAGTATTCTTGAAGTATTAATGGAGAGCACACCTAGAGAAATCGACGCAACAAGGCTTGAGAAGGGTCTTTGTGAGATGGAAGAGGTTGTTGCAATCCATGAATTGCATATTTGGGCGATTACAGTCGGGAAAGTACTCTTGGCTTGCCATGTCAAGATTAAACCTGATGCTGATGCTGACATGGTGCTGGATAAGGTTATCGATTATATTAGAAGGGAATATAACATTAGCCACGTTACCATTCAAATAGAAAGAGAGTAGTGTGGAGGTAAAGTTTGTTTGCCTGTTGTACTCGTCATTGGCTTCTATATTTTTTCGGATATTAGTTGAAACAGTAAAACATCATCTGGCTAAGCGATTCCAGTATCTGTTTCGTTTTAGTAAATCATGGTCTTTTAGCATGTTGGCTTGCTTTAC</gDNA_template>
            <first_frame> N  L  Y  N  T  L  L  K  S  Q  L  R  F  V  R :   E  W  F  W  S  L  G  C  C  *  L  R  V  Q  L  E  L  D  F  S  L  E  R :   W  I  R  R  I  W  N  M  D  K  *  L  R  *  V  L  T  *  Q  V  K  R  R  G  L  K  S  V  V  Q  D  R  V  D  S  Q  M  L  T  P  C  L  R  M  H  R  R  D  Q  H  L  *  G  N  C  S  L  R  L  S  Y  A  S  F  L  W  L  S  R  L  S  E  V  L  K  P  T  V  L  Q  F  *  R  M  R  L  I  Y  C  Q  M  L  Q  L  L  Q  Y  P  C  F  H  S  G  H  Q  D  G  R  L  I  H  A  S  P  M  G  F  L  E  L  R  Y  L  G  H  *  F  L  S  K  *  Y  G  F  *  L  G  S  L  F  T  K  P  L  L  D  L  Y  M  I  Q  V  K  F  K  V  S  S  C  L  W  C  L  H  L  D  *  E  *  T  S  S  W  H  S  C  *  V  M  I  T  A  T  A  T  A  M  D  T  A  T  V  M  T  T  A  M  N  T  V  I  V  M  K  S  M  L  I  A  T  V  I  M  N  M  P  T  V  S  I  N  I  Y  M  E  L  V  L  A  D  T  I  T  I  M  R  D  L  Q  T  E  I  N  T  S  M  H  T  T  L  T  T  L  C  L  Y  L  R  I  P  V  R  V  K  V  K  R  K  R  S  S  G  I  *  M  F  R  G  L  I  F  M  Y  *  E  I  L  F  R  A  *  A  S  *  L  E  E  L  S  Y  G  I  N  Q  N  G  K  S  L  I  P  S  A  L  S  F  S  L  S  L  F  L  P  Q  P  L  G  *  F  G  V  F  L  K  Y  *  W  R  A  H  L  E  K  S  T  Q  Q  G  L  R  R  V  F  V  R  W  K  R  L  L  Q  S  M  N  C  I  F  G  R  L  Q  S  G  K  Y  S  W  L  A  M  S  R  L  N  L  M  L  M  L  T  W  C  W  I  R  L  S  I  I  L  E  G  N  I  T  L  A  T  L  P  F  K  *  K  E  S  S  V  E  V  K  F  V  C  L  L  Y  S  S  L  A  S  I  F  F  R  I  L  V  E  T  V  K  H  H  L  A  K  R  F  Q  Y  L  F  R  F  S  K  S  W  S  F  S  M  L  A  C  F   </first_frame>
            <second_frame>  I  F  I  I  P  F  *  N  L  S  S  D  L  *   : G  S  G  F  G  L  L  G  A  V  N  *  E  F  N  L  S  *  T  S  V  W  K   : D  G  Y  A  E  S  G  T  W  T  S  N  *  G  E  C  *  H  N  R  S  R  E  G  D  *  N  L  W  F  R  T  V  W  I  L  R  C  *  H  H  V  *  G  C  T  G  E  I  S  I  Y  E  E  T  V  H  C  G  C  P  M  H  H  F  Y  G  C  R  G  C  R  R  Y  *  S  Q  Q  S  C  N  F  D  G  C  G  S  S  I  V  R  C  C  S  F  C  N  I  L  V  F  T  L  G  I  R  M  G  G  *  S  T  P  V  L  W  V  F  *  N  *  D  T  W  G  T  S  F  Y  P  N  D  M  A  S  S  W  D  P  C  L  R  S  H  C  S  T  Y  T  *  Y  R  *  S  S  R  F  P  H  V  C  G  V  C  I  W  I  R  S  E  P  H  H  G  T  L  A  R  S  *  S  R  P  R  P  R  P  W  T  Q  P  R  S  *  P  R  P  *  T  Q  S  *  S  *  R  A  C  S  *  P  R  *  S  *  T  C  P  R  *  A  *  T  Y  T  W  N  *  C  *  P  T  P  S  P  *  *  G  T  F  K  P  R  S  T  H  P  C  T  R  R  *  Q  H  C  A  S  T  *  G  F  L  *  G  *  R  *  K  E  K  E  A  A  E  Y  K  C  S  G  G  L  S  S  C  I  R  R  F  Y  S  E  H  R  R  H  D  W  R  S  Y  H  M  V  *  T  R  M  E  N  H  *  S  H  L  H  S  H  F  L  C  H  C  S  C  H  N  H  *  D  D  S  E  Y  S  *  S  I  N  G  E  H  T  *  R  N  R  R  N  K  A  *  E  G  S  L  *  D  G  R  G  C  C  N  P  *  I  A  Y  L  G  D  Y  S  R  E  S  T  L  G  L  P  C  Q  D  *  T  *  C  *  C  *  H  G  A  G  *  G  Y  R  L  Y  *  K  G  I  *  H  *  P  R  Y  H  S  N  R  K  R  V  V  W  R  *  S  L  F  A  C  C  T  R  H  W  L  L  Y  F  F  G  Y  *  L  K  Q  *  N  I  I  W  L  S  D  S  S  I  C  F  V  L  V  N  H  G  L  L  A  C  W  L  A  L  </second_frame>
            <third_frame>   S  L  *  Y  P  F  E  I  S  A  Q  I  C  K  :  G  V  V  L  V  S  W  V  L  L  I  E  S  S  T  *  A  R  L  Q  F  G  K  :  M  D  T  Q  N  L  E  H  G  Q  V  I  E  V  S  V  D  I  T  G  Q  E  K  G  T  K  I  C  G  S  G  P  C  G  F  S  D  V  N  T  M  S  K  D  A  Q  E  R  S  A  S  M  R  K  L  F  I  A  V  V  L  C  I  I  F  M  A  V  E  V  V  G  G  I  K  A  N  S  L  A  I  L  T  D  A  A  H  L  L  S  D  V  A  A  F  A  I  S  L  F  S  L  W  A  S  G  W  E  A  N  P  R  Q  S  Y  G  F  F  R  I  E  I  L  G  A  L  V  S  I  Q  M  I  W  L  L  A  G  I  L  V  Y  E  A  I  A  R  L  I  H  D  T  G  E  V  Q  G  F  L  M  F  V  V  S  A  F  G  L  G  V  N  L  I  M  A  L  L  L  G  H  D  H  G  H  G  H  G  H  G  H  S  H  G  H  D  H  G  H  E  H  S  H  S  H  E  E  H  A  H  S  H  G  D  H  E  H  A  H  G  E  H  K  H  I  H  G  I  S  V  S  R  H  H  H  H  N  E  G  P  S  N  R  D  Q  H  I  H  A  H  D  A  D  N  T  V  P  L  L  K  D  S  C  E  G  E  G  E  K  K  K  K  Q  R  N  I  N  V  Q  G  A  Y  L  H  V  L  G  D  S  I  Q  S  I  G  V  M  I  G  G  A  I  I  W  Y  K  P  E  W  K  I  I  D  P  I  C  T  L  I  F  S  V  I  V  L  A  T  T  I  R  M  I  R  S  I  L  E  V  L  M  E  S  T  P  R  E  I  D  A  T  R  L  E  K  G  L  C  E  M  E  E  V  V  A  I  H  E  L  H  I  W  A  I  T  V  G  K  V  L  L  A  C  H  V  K  I  K  P  D  A  D  A  D  M  V  L  D  K  V  I  D  Y  I  R  R  E  Y  N  I  S  H  V  T  I  Q  I  E  R  E  *  C  G  G  K  V  C  L  P  V  V  L  V  I  G  F  Y  I  F  S  D  I  S  *  N  S  K  T  S  S  G  *  A  I  P  V  S  V  S  F  *  *  I  M  V  F  *  H  V  G  L  L  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101272" stop="101252"/>
                    <exon start="100377" stop="99127"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1269</number_coding_nucleotides>
                  <number_encoded_amino_acids>423</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARLQFGKMDTQNLEHGQVIEVSVDITGQEKGTKICGSGPCGFSDVNTMSKDAQERSASMRKLFIAVVLCIIFMAVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEANPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIARLIHDTGEVQGFLMFVVSAFGLGVNLIMALLLGHDHGHGHGHGHSHGHDHGHEHSHSHEEHAHSHGDHEHAHGEHKHIHGISVSRHHHHNEGPSNRDQHIHAHDADNTVPLLKDSCEGEGEKKKKQRNINVQGAYLHVLGDSIQSIGVMIGGAIIWYKPEWKIIDPICTLIFSVIVLATTIRMIRSILEVLMESTPREIDATRLEKGLCEMEEVVAIHELHIWAITVGKVLLACHVKIKPDADADMVLDKVIDYIRREYNISHVTIQIERE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="102614" e_stop="102441"/>
            <exon e_start="100377" e_stop="100267"/>
            <exon e_start="99231" e_stop="98990"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.863" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102614" e_stop="102441" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.863" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102440" i_stop="100378" i_length="2063"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100377" e_stop="100267" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="100266" i_stop="99232" i_length="1035"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="99231" e_stop="98990" e_length="242"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102614" stop="102441"/>
              <exon start="100377" stop="100267"/>
              <exon start="99231" stop="98990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346421" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTATCTCTTCCCCCTTTTCCTCCCTTCTTATATAGGGTATATACCCCATATTATGCCTACAGCCTATATAGCATAAGCCACCATAGCTAAATTTGGTGAATTTGATGATTTGGGTCGGTTAAAAATCCAATCTTTATAATACCCTTTTGAAATCTCAGCTCAGATTTGTAAG : ATGGATACGCAGAATCTGGAACATGGACAAGTAATTGAGGTGAGTGTTGACATAACAGGTCAAGAGAAGGGGACTAAAATCTGTGGTTCAGGACCGTGTGGATTCTCAGAT : ATTAAACCTGATGCTGATGCTGACATGGTGCTGGATAAGGTTATCGATTATATTAGAAGGGAATATAACATTAGCCACGTTACCATTCAAATAGAAAGAGAGTAGTGTGGAGGTAAAGTTTGTTTGCCTGTTGTACTCGTCATTGGCTTCTATATTTTTTCGGATATTAGTTGAAACAGTAAAACATCATCTGGCTAAGCGATTCCAGTATCTGTTTCGTTTTAGTAAATCATGGTCTTTTA</gDNA_template>
            <first_frame> F  Y  L  F  P  L  F  L  P  S  Y  I  G  Y  I  P  H  I  M  P  T  A  Y  I  A  *  A  T  I  A  K  F  G  E  F  D  D  L  G  R  L  K  I  Q  S  L  *  Y  P  F  E  I  S  A  Q  I  C  K  :  M  D  T  Q  N  L  E  H  G  Q  V  I  E  V  S  V  D  I  T  G  Q  E  K  G  T  K  I  C  G  S  G  P  C  G  F  S  D  :  I  K  P  D  A  D  A  D  M  V  L  D  K  V  I  D  Y  I  R  R  E  Y  N  I  S  H  V  T  I  Q  I  E  R  E  *  C  G  G  K  V  C  L  P  V  V  L  V  I  G  F  Y  I  F  S  D  I  S  *  N  S  K  T  S  S  G  *  A  I  P  V  S  V  S  F  *  *  I  M  V  F   </first_frame>
            <second_frame>  F  I  S  S  P  F  S  S  L  L  I  *  G  I  Y  P  I  L  C  L  Q  P  I  *  H  K  P  P  *  L  N  L  V  N  L  M  I  W  V  G  *  K  S  N  L  Y  N  T  L  L  K  S  Q  L  R  F  V  R :   W  I  R  R  I  W  N  M  D  K  *  L  R  *  V  L  T  *  Q  V  K  R  R  G  L  K  S  V  V  Q  D  R  V  D  S  Q  I :   L  N  L  M  L  M  L  T  W  C  W  I  R  L  S  I  I  L  E  G  N  I  T  L  A  T  L  P  F  K  *  K  E  S  S  V  E  V  K  F  V  C  L  L  Y  S  S  L  A  S  I  F  F  R  I  L  V  E  T  V  K  H  H  L  A  K  R  F  Q  Y  L  F  R  F  S  K  S  W  S  F  </second_frame>
            <third_frame>   L  S  L  P  P  F  P  P  F  L  Y  R  V  Y  T  P  Y  Y  A  Y  S  L  Y  S  I  S  H  H  S  *  I  W  *  I  *  *  F  G  S  V  K  N  P  I  F  I  I  P  F  *  N  L  S  S  D  L  *   : D  G  Y  A  E  S  G  T  W  T  S  N  *  G  E  C  *  H  N  R  S  R  E  G  D  *  N  L  W  F  R  T  V  W  I  L  R   : Y  *  T  *  C  *  C  *  H  G  A  G  *  G  Y  R  L  Y  *  K  G  I  *  H  *  P  R  Y  H  S  N  R  K  R  V  V  W  R  *  S  L  F  A  C  C  T  R  H  W  L  L  Y  F  F  G  Y  *  L  K  Q  *  N  I  I  W  L  S  D  S  S  I  C  F  V  L  V  N  H  G  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102473" stop="102441"/>
                    <exon start="100377" stop="100267"/>
                    <exon start="99231" stop="99127"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPFEISAQICKMDTQNLEHGQVIEVSVDITGQEKGTKICGSGPCGFSDIKPDADADMVLDKVIDYIRREYNISHVTIQIERE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="109017" PGL_stop="109463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109017" e_stop="109463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="109017" e_stop="109463" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109017" stop="109337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109017" stop="109321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109018" stop="109463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATATATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACGGAAACACAATATATACACTTTTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCATTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATATTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAAAACAGAATTATACACTTTTGTGTATAAAGCGAGAGAGGCGAACGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACGCTGGCAAATTTTAGCTAAGGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  I  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  C  I  I  H  W  P  F  S  L  Q  Y  L  K  *  N  I  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  K  T  E  L  Y  T  F  V  Y  K  A  R  E  A  N  E  N  G  E  W  R  A  R  F  L  G  E  R  R  W  Q  I  L  A  K  V  C  Y  G  A  Q  L  N  Q  T  L  A  I  P  F  N  L  G  Y  * </first_frame>
            <second_frame>  K  I  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  R  K  H  N  I  Y  T  F  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  I  G  L  F  L  C  N  I  *  S  K  I  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  T  R  M  E  S  G  E  R  D  F  W  E  R  D  A  G  K  F  *  L  R  F  A  M  E  H  N  *  I  K  P  *  L  F  H  L  I  *  V  I   </second_frame>
            <third_frame>   K  Y  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  G  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  Y  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  F  G  R  E  T  L  A  N  F  S  *  G  L  L  W  S  T  I  K  S  N  P  S  Y  S  I  *  F  R  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109233" stop="109463"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYNTKIYIFACVYTIFSRFIQNKTELYTFVYKAREANENGEWRARFLGERRWQILAKVCYGAQLNQTLAIPFNLGY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109204" stop="109398"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKIFVNCIIKCITRRYTFLHVYIQFSLALYKTKQNYTLLCIKRERRTRMESGERDFWERDAGKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="120173" PGL_stop="120789"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120173" e_stop="120789"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120173" e_stop="120789" e_length="617"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120173" stop="120601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120203" stop="120789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120504" stop="120690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397167" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTATTACTCTTCTCCACCACCATGCACCGTCGTCATCATGGGCTGCTCCGCCACCCTCCTCCCTACTCCTCCTCATCTCCGCCGTCACTCCACCTCCGCCTTCCCTCCTACTCCCCACCTCAACCGACGTAAACTCCTCTTCCTCTCCACCACTCTCACATTTCCCTCAACCATCTCTACCTCCGTCGCTGCCCCACCGCCGTCACCGGACACTACTATCACTGAACGAGTCTTCTTAGACTTAAGTATATGTCCTAATTACTTCAAAAACAGGAATCTAGGAGATGATCTATCTAATTGCGCTGATTCTGAACCAATTGGTCGACTTGTTTTAGGGCTTTACGGTAACCTAGTTCCGATTACTGTTTCAAATTTCAAAGCTATGTGTACTGGTTCGTCTGGATCGACTTATAAGGGTACTTTGGTCCAGAAGATATTTCCGGGACAGTTTTTTATGGCGGGGAGACAGGGGAGAAGAGATAAAGGAGAAGTGAAACCGCCATTGAAGTTAATTAGGAATGTGGAGTCAATTGAATCTAAAGCTTTTCTTTTGGAACATTCTAGAGCTGGAGTTGTTTCATTGCCTTTAGCTGAGAATGATGATGATGATGATC</gDNA_template>
            <first_frame> S  L  L  L  F  S  T  T  M  H  R  R  H  H  G  L  L  R  H  P  P  P  Y  S  S  S  S  P  P  S  L  H  L  R  L  P  S  Y  S  P  P  Q  P  T  *  T  P  L  P  L  H  H  S  H  I  S  L  N  H  L  Y  L  R  R  C  P  T  A  V  T  G  H  Y  Y  H  *  T  S  L  L  R  L  K  Y  M  S  *  L  L  Q  K  Q  E  S  R  R  *  S  I  *  L  R  *  F  *  T  N  W  S  T  C  F  R  A  L  R  *  P  S  S  D  Y  C  F  K  F  Q  S  Y  V  Y  W  F  V  W  I  D  L  *  G  Y  F  G  P  E  D  I  S  G  T  V  F  Y  G  G  E  T  G  E  K  R  *  R  R  S  E  T  A  I  E  V  N  *  E  C  G  V  N  *  I  *  S  F  S  F  G  T  F  *  S  W  S  C  F  I  A  F  S  *  E  *  *  *  *  *   </first_frame>
            <second_frame>  L  Y  Y  S  S  P  P  P  C  T  V  V  I  M  G  C  S  A  T  L  L  P  T  P  P  H  L  R  R  H  S  T  S  A  F  P  P  T  P  H  L  N  R  R  K  L  L  F  L  S  T  T  L  T  F  P  S  T  I  S  T  S  V  A  A  P  P  P  S  P  D  T  T  I  T  E  R  V  F  L  D  L  S  I  C  P  N  Y  F  K  N  R  N  L  G  D  D  L  S  N  C  A  D  S  E  P  I  G  R  L  V  L  G  L  Y  G  N  L  V  P  I  T  V  S  N  F  K  A  M  C  T  G  S  S  G  S  T  Y  K  G  T  L  V  Q  K  I  F  P  G  Q  F  F  M  A  G  R  Q  G  R  R  D  K  G  E  V  K  P  P  L  K  L  I  R  N  V  E  S  I  E  S  K  A  F  L  L  E  H  S  R  A  G  V  V  S  L  P  L  A  E  N  D  D  D  D  D  </second_frame>
            <third_frame>   S  I  T  L  L  H  H  H  A  P  S  S  S  W  A  A  P  P  P  S  S  L  L  L  L  I  S  A  V  T  P  P  P  P  S  L  L  L  P  T  S  T  D  V  N  S  S  S  S  P  P  L  S  H  F  P  Q  P  S  L  P  P  S  L  P  H  R  R  H  R  T  L  L  S  L  N  E  S  S  *  T  *  V  Y  V  L  I  T  S  K  T  G  I  *  E  M  I  Y  L  I  A  L  I  L  N  Q  L  V  D  L  F  *  G  F  T  V  T  *  F  R  L  L  F  Q  I  S  K  L  C  V  L  V  R  L  D  R  L  I  R  V  L  W  S  R  R  Y  F  R  D  S  F  L  W  R  G  D  R  G  E  E  I  K  E  K  *  N  R  H  *  S  *  L  G  M  W  S  Q  L  N  L  K  L  F  F  W  N  I  L  E  L  E  L  F  H  C  L  *  L  R  M  M  M  M  M  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0097J03.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120174" stop="120788"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYYSSPPPCTVVIMGCSATLLPTPPHLRRHSTSAFPPTPHLNRRKLLFLSTTLTFPSTISTSVAAPPPSPDTTITERVFLDLSICPNYFKNRNLGDDLSNCADSEPIGRLVLGLYGNLVPITVSNFKAMCTGSSGSTYKGTLVQKIFPGQFFMAGRQGRRDKGEVKPPLKLIRNVESIESKAFLLEHSRAGVVSLPLAENDDDDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 166 chains have been computed
$ 
$ memory statistics:
$ 223712 bytes spliced alignments in total
$ 110 spliced alignments have been stored
$ 2033 bytes was the average size of a spliced alignment
$ 28488 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1499 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 183 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 21:53:50
-->
