<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 21:48:46"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07SLm0104D24-ejogE/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07SLm0104D24-ejogE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0104D24-ejogE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U602789" ref_strand="+" ref_description="SGN-U602789 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tgatcaacaaaatctcaccccgtatcctgtgctgggaatactgaaaggcatggttgcttgctctcctagtatccaaatcaatcaggccattccaaggcctcaagtttgtcctcctcacttcagtcaccaaattgattcggtgcagcaaaattgtttaggtgcaatcaaacaaagccctttcaccctgtataatcagaaagcaaattttgaggagccttttccaggtggatataaatctttcacaatcagcccatatggacctgtaccaacattaatgcatcattactccagccagaatgggggctcgagctctcttgatctgaacagctcaagctgtgccatcaactttccttactcacgtctagattccggaaggaacttccgatcatcgtggtctcagttctctacagaaagcaccccatggttttcagatgcaaaacaaaagaaactactaatggattttcatgaattatattcttcatctgacaggaaacatcattactgcagcagcattactggggatagccgtcaaactgacccttcactatatcttgcatcagagcgcttctgttctttcactcagcgccctcaacatgcattggggaatccagtctctctaccatctttagctaacaatgtccctatgccactccaaataggttccagagtaaacactggctcatataaaagaaatggtgacgtgaccaaaatcatatctactccttgtcttagagaacttggtgacagcagaaagagcaaaaagaggccattatctacatcagacaatcgtacaaatgtggcggagatccctaattttttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0104D24-ejogE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0104D24.1" temp_strand="-" temp_description="C07SLm0104D24.1  AC236771.1 htgs_phase:2 submitted_to_sgn_as:gi|238909049|gb|AC236771.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0104D24, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="1133" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="833" g_stop="11" g_length="823"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="823" r_length="823" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0104D24.1" gen_strand="-" ref_id="SGN-U602789" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0104D24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U602789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="833" e_stop="11"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCAACAAAATCTCACCGTGCATCCTGTGCTGGGAATACTGAAAGGCATGGTTGCTTGCTCTCCTAGTATCCAAATCAATCAGGCCATTCCAAGGCCTCAAGTTTGTCCTCCTCACTTCAGTCACCAAATTGATTCGGTGCAGCAAAATTGTTTAGGTGCAATCAAACAAAGCCCTTTCACCCTGTATAATCAGAAAGCAAATTTTGAGGAGCCTTTTCCAGGTGGATATAAATCTTTCACAATCAGCCCATATGGACCTGTACCAACATTAATGCATCATTACTCCAGCCAGAATGGGGGCTCGAGCTCTCTTGATCTGAACAGCTCAAGCTGTGCCATCAACTTTCCTTACTCACGTCTAGATTCCGGAAGGAACTTCCGATCATCGTGGTCTCAGTTCTCTACAGAAAGCACCCCATGGTTTTCAGATGCAAAACAAAAGAAACTACTAATGGATTTTCATGAATTATATTCTTCATCTGACAGGAAACATCATTACTGCAGCAGCATTACTGGGGATAGCCGTCAAACTGACCCTTCACTATATCTTGCATCAGAGCGCTTCTGTTCTTTCACTCAGCGCCCTCAACATGCATTGGGGAATCCAGTCTCTCTACCATCTTTAGCTAACAATGTCCCTATGCCACTCCAAATAGGTTCCAGAGTAAACACTGGCTCATATAAAAGAAATGGTGACGTGACCAAAATCATATCTACTCCTTGTCTTAGAGATCTTGGTGACAGCAGAAAGAGCAAAAAGAGGCCATTATCTACATCAGACAATCGTACAAATGTGGCGGAGATCCCTAATTTTTTGTTT</genome_strand>
        <mrna_strand>TGATCAACAAAATCTCACCCCGTATCCTGTGCTGGGAATACTGAAAGGCATGGTTGCTTGCTCTCCTAGTATCCAAATCAATCAGGCCATTCCAAGGCCTCAAGTTTGTCCTCCTCACTTCAGTCACCAAATTGATTCGGTGCAGCAAAATTGTTTAGGTGCAATCAAACAAAGCCCTTTCACCCTGTATAATCAGAAAGCAAATTTTGAGGAGCCTTTTCCAGGTGGATATAAATCTTTCACAATCAGCCCATATGGACCTGTACCAACATTAATGCATCATTACTCCAGCCAGAATGGGGGCTCGAGCTCTCTTGATCTGAACAGCTCAAGCTGTGCCATCAACTTTCCTTACTCACGTCTAGATTCCGGAAGGAACTTCCGATCATCGTGGTCTCAGTTCTCTACAGAAAGCACCCCATGGTTTTCAGATGCAAAACAAAAGAAACTACTAATGGATTTTCATGAATTATATTCTTCATCTGACAGGAAACATCATTACTGCAGCAGCATTACTGGGGATAGCCGTCAAACTGACCCTTCACTATATCTTGCATCAGAGCGCTTCTGTTCTTTCACTCAGCGCCCTCAACATGCATTGGGGAATCCAGTCTCTCTACCATCTTTAGCTAACAATGTCCCTATGCCACTCCAAATAGGTTCCAGAGTAAACACTGGCTCATATAAAAGAAATGGTGACGTGACCAAAATCATATCTACTCCTTGTCTTAGAGAACTTGGTGACAGCAGAAAGAGCAAAAAGAGGCCATTATCTACATCAGACAATCGTACAAATGTGGCGGAGATCCCTAATTTTTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0104D24-ejogE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U597636" ref_strand="+" ref_description="SGN-U597636 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|156842210|ref|XP_001644474.1| (e_value=3e-46) hypothetical; (*ATH) AT3G30420.1 (e_value=9e-11) |; (*SWP) sp|A6ZM04|PIF1_YEAS7 (e_value=3e-43) DNA repair and recombination protein PIF1 OS=Saccharomyces cerevisiae (strain YJM789) GN=PIF1; ">
      <seq>ggaggtgtcattgttgtacacagctaaaacagcctataggttgttgagctccaaagctacatgggggtgtcaagttagtgcaaagagtaaggtaaaaagttgtagaagtgaactcataggtacaaaaaaaactaaagtgaagttaactgagcagcaaaatcaaatcttggaagcaatttcaaatggaaattctgttttcattactgggtcagcagggaccggaaaaacctatttacttcagcatataatcactaaacttaagaagattcatgggaaatctcgggttttcgttacagcttcaactggggttgctgcttgttccctcaatgggcaaacccttcattcttttgctggaattggacttggtgatgctagttgtgtggatttgctatctagggtttcgttggataagagagcgtatcgaagatggaataaagttagggctttggttatcgatgagattagtatggttagtggtgaggttttcgacaatcttgagttcattgcaaggagcattagaagtgaagaacttggctgtgaggagaagatttggggtgggatacaattagttgtgagtggagacttttttcagcttccaccagtaattaataagaagggacaacagaaggaatttgcttttgaagctgattgttggaatgctagttttgacgaacaaatagaacttaaaactatctttaggcagtctgatgctcagcttataaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0104D24-ejogE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0104D24.1" temp_strand="+" temp_description="C07SLm0104D24.1  AC236771.1 htgs_phase:2 submitted_to_sgn_as:gi|238909049|gb|AC236771.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0104D24, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="19569" stop="20894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19869" g_stop="20594" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0104D24.1" gen_strand="+" ref_id="SGN-U597636" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0104D24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U597636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19869" e_stop="20594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTGTCATTGTTGTACACAGCTAAAACAGCCTATAGGTTGTTGAGCTCCAAAGCTACATGGGGGTGTCAAGTTAGTGCAAAGAGTAAGGTAAAAAGTTGTAGAAGTGAACTCATAGGTACAAAAAAAACTAAAGTGAAGTTAACTGAGCAGCAAAATCAAATCTTGGAAGCAATTTCAAATGGAAATTCTGTTTTCATTACTGGGTCAGCAGGGACCGGAAAAACCTATTTACTTCAGCATATAATCACTAAACTTAAGAAGATTCATGGGAAATCTCGGGTTTTCGTTACAGCTTCAACTGGGGTTGCTGCTTGTTCCCTCAATGGGCAAACCCTTCATTCTTTTGCTGGAATTGGACTTGGTGATGCTAGTTGTGTGGATTTGCTATCTAGGGTTTCGTTGGATAAGAGAGCGTATCGAAGATGGAATAAAGTTAGGGCTTTGGTTATCGATGAGATTAGTATGGTTAGTGGTGAGGTTTTCGACAATCTTGAGTTCATTGCAAGGAGCATTAGAAGTGAAGAACTTGGCTGTGAGGAGAAGATTTGGGGTGGGATACAATTAGTTGTGAGTGGAGACTTTTTTCAGCTTCCACCAGTAATTAATAAGAAGGGACAACAGAAGGAATTTGCTTTTGAAGCTGATTGTTGGAATGCTAGTTTTGACGAACAAATAGAACTTAAAACTATCTTTAGGCAGTCTGATGCTCAGCTTATAAAACT</genome_strand>
        <mrna_strand>GGAGGTGTCATTGTTGTACACAGCTAAAACAGCCTATAGGTTGTTGAGCTCCAAAGCTACATGGGGGTGTCAAGTTAGTGCAAAGAGTAAGGTAAAAAGTTGTAGAAGTGAACTCATAGGTACAAAAAAAACTAAAGTGAAGTTAACTGAGCAGCAAAATCAAATCTTGGAAGCAATTTCAAATGGAAATTCTGTTTTCATTACTGGGTCAGCAGGGACCGGAAAAACCTATTTACTTCAGCATATAATCACTAAACTTAAGAAGATTCATGGGAAATCTCGGGTTTTCGTTACAGCTTCAACTGGGGTTGCTGCTTGTTCCCTCAATGGGCAAACCCTTCATTCTTTTGCTGGAATTGGACTTGGTGATGCTAGTTGTGTGGATTTGCTATCTAGGGTTTCGTTGGATAAGAGAGCGTATCGAAGATGGAATAAAGTTAGGGCTTTGGTTATCGATGAGATTAGTATGGTTAGTGGTGAGGTTTTCGACAATCTTGAGTTCATTGCAAGGAGCATTAGAAGTGAAGAACTTGGCTGTGAGGAGAAGATTTGGGGTGGGATACAATTAGTTGTGAGTGGAGACTTTTTTCAGCTTCCACCAGTAATTAATAAGAAGGGACAACAGAAGGAATTTGCTTTTGAAGCTGATTGTTGGAATGCTAGTTTTGACGAACAAATAGAACTTAAAACTATCTTTAGGCAGTCTGATGCTCAGCTTATAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07SLm0104D24-ejogE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U582185" ref_strand="+" ref_description="SGN-U582185 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>gggttattctttttttaatcaatgacctcttatagctgcacgaaagcaaaaaaatgaaaaataaaataaaaggaagcttggaggaaagaatacccgcaaatgtctttgttttattaatttatagctacatgaagagaaaaaagtatttataagctagtagaagaagtacaaacaaatacatattcaggtttggcctttaaaccctctgttatgggaggaactttggaacaaaaagtgaagaaaattcctgtaacattccttccatagtctctctgggaaattgattatcaacacttgcctatctgttcattatagtctctctgggatattgattatcaacacttgcctatctgttcattcttactgccatgtttattattgtaacaaatgaggaatgttgtgtttgtactgttttaaactatatatgaaaacaaaaggatagtctcgtgcgctaacctctcgttacttaggggtccagggaagggctggaaccatattgggtatatgtacacaatcttactacttggcatttcagtaagaagttgtttccacagcttgaaacaatgactttgtggttgcagtacaccacttatcattgtgccaagcccaccttctattaaatcatctttgaatgaacgcaaaaatatattttgacttcaatcagtgcccaatgtagtcaacttggcattcttcacaagtttttgtacagtgtgtgagcttcatgaccactttctcagcttctaattgtgttacttgcaggcatgggcacttaatttttttcagaaactgaaggccgtcttgaagtttgatcattcaaattcaaagagtcactggtctcgcccaaccttctgatgagatgtgcttgcattgcagctacatttttgatcgattaattctttccaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07SLm0104D24-ejogE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07SLm0104D24.1" temp_strand="-" temp_description="C07SLm0104D24.1  AC236771.1 htgs_phase:2 submitted_to_sgn_as:gi|238909049|gb|AC236771.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07SLm0104D24, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="25389" stop="23885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25090" g_stop="24185" g_length="906"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="906" r_length="906" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07SLm0104D24.1" gen_strand="-" ref_id="SGN-U582185" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07SLm0104D24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25090" e_stop="24185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTTATTCTTTTTTTAATCAATGACCTCTTATAGCTGCACGAAAGCAAAAAAATGAAAAATAAAATAAAAGGAAGCTTGGAGGAAAGAATACCCGCAAATGTCTTTGTTTTATTAATTTATAGCTACATGAAGAGAAAAAAGTATTTATAAGCTAGTAGAAGAAGTACAAACAAATACATATTCAGGTTTGGCCTTTAAACCCTCTGTTATGGGAGGAACTTTGGAACAAAAAGTGAAGAAAATTCCTGTAACATTCCTTCCATAGTCTCTCTGGGAAATTGATTATCAACACTTGCCTATCTGTTCATTATAGTCTCTCTGGGATATTGATTATCAACACTTGCCTATCTGTTCATTCTTACTGCCATGTTTATTATTGTAACAAATGAGGAATGTTGTGTTTGTACTGTTTTAAACTATATATGAAAACAAAAGGATAGTCTCGTGCGCTAACCTCTCGTTACTTAGGGGTCCAGGGAAGGGCTGGAACCATATTGGGTATATGTACACAATCTTACTACTTGGCATTTCAGTAAGAAGTTGTTTCCACAGCTTGAAACAATGACTTTGTGGTTGCAGTACACCACTTATCATTGTGCCAAGCCCACCTTCTATTAAATCATCTTTGAATGAACGCAAAAATATATTTTGACTTCAATCAGTGCCCAATGTAGTCAACTTGGCATTCTTCACAAGTTTTTGTACAGTGTGTGAGCTTCATGACCACTTTCTCAGCTTCTAATTGTGTTACTTGCAGGCATGGGCACTTAATTTTTTTCAGAAACTGAAGGCCGTCTTGAAGTTTGATCATTCAAATTCAAAGAGTCACTGGTCTCGCCCAACCTTCTGATGAGATGTGCTTGCATTGCAGCTACATTTTTGATCGATTAATTCTTTCCAATGT</genome_strand>
        <mrna_strand>GGGTTATTCTTTTTTTAATCAATGACCTCTTATAGCTGCACGAAAGCAAAAAAATGAAAAATAAAATAAAAGGAAGCTTGGAGGAAAGAATACCCGCAAATGTCTTTGTTTTATTAATTTATAGCTACATGAAGAGAAAAAAGTATTTATAAGCTAGTAGAAGAAGTACAAACAAATACATATTCAGGTTTGGCCTTTAAACCCTCTGTTATGGGAGGAACTTTGGAACAAAAAGTGAAGAAAATTCCTGTAACATTCCTTCCATAGTCTCTCTGGGAAATTGATTATCAACACTTGCCTATCTGTTCATTATAGTCTCTCTGGGATATTGATTATCAACACTTGCCTATCTGTTCATTCTTACTGCCATGTTTATTATTGTAACAAATGAGGAATGTTGTGTTTGTACTGTTTTAAACTATATATGAAAACAAAAGGATAGTCTCGTGCGCTAACCTCTCGTTACTTAGGGGTCCAGGGAAGGGCTGGAACCATATTGGGTATATGTACACAATCTTACTACTTGGCATTTCAGTAAGAAGTTGTTTCCACAGCTTGAAACAATGACTTTGTGGTTGCAGTACACCACTTATCATTGTGCCAAGCCCACCTTCTATTAAATCATCTTTGAATGAACGCAAAAATATATTTTGACTTCAATCAGTGCCCAATGTAGTCAACTTGGCATTCTTCACAAGTTTTTGTACAGTGTGTGAGCTTCATGACCACTTTCTCAGCTTCTAATTGTGTTACTTGCAGGCATGGGCACTTAATTTTTTTCAGAAACTGAAGGCCGTCTTGAAGTTTGATCATTCAAATTCAAAGAGTCACTGGTCTCGCCCAACCTTCTGATGAGATGTGCTTGCATTGCAGCTACATTTTTGATCGATTAATTCTTTCCAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="833" PGL_stop="11"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="833" e_stop="11"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="833" e_stop="11" e_length="823"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="833" stop="11"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602789" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATCAACAAAATCTCACCGTGCATCCTGTGCTGGGAATACTGAAAGGCATGGTTGCTTGCTCTCCTAGTATCCAAATCAATCAGGCCATTCCAAGGCCTCAAGTTTGTCCTCCTCACTTCAGTCACCAAATTGATTCGGTGCAGCAAAATTGTTTAGGTGCAATCAAACAAAGCCCTTTCACCCTGTATAATCAGAAAGCAAATTTTGAGGAGCCTTTTCCAGGTGGATATAAATCTTTCACAATCAGCCCATATGGACCTGTACCAACATTAATGCATCATTACTCCAGCCAGAATGGGGGCTCGAGCTCTCTTGATCTGAACAGCTCAAGCTGTGCCATCAACTTTCCTTACTCACGTCTAGATTCCGGAAGGAACTTCCGATCATCGTGGTCTCAGTTCTCTACAGAAAGCACCCCATGGTTTTCAGATGCAAAACAAAAGAAACTACTAATGGATTTTCATGAATTATATTCTTCATCTGACAGGAAACATCATTACTGCAGCAGCATTACTGGGGATAGCCGTCAAACTGACCCTTCACTATATCTTGCATCAGAGCGCTTCTGTTCTTTCACTCAGCGCCCTCAACATGCATTGGGGAATCCAGTCTCTCTACCATCTTTAGCTAACAATGTCCCTATGCCACTCCAAATAGGTTCCAGAGTAAACACTGGCTCATATAAAAGAAATGGTGACGTGACCAAAATCATATCTACTCCTTGTCTTAGAGATCTTGGTGACAGCAGAAAGAGCAAAAAGAGGCCATTATCTACATCAGACAATCGTACAAATGTGGCGGAGATCCCTAATTTTTTGTTT</gDNA_template>
            <first_frame> *  S  T  K  S  H  R  A  S  C  A  G  N  T  E  R  H  G  C  L  L  S  *  Y  P  N  Q  S  G  H  S  K  A  S  S  L  S  S  S  L  Q  S  P  N  *  F  G  A  A  K  L  F  R  C  N  Q  T  K  P  F  H  P  V  *  S  E  S  K  F  *  G  A  F  S  R  W  I  *  I  F  H  N  Q  P  I  W  T  C  T  N  I  N  A  S  L  L  Q  P  E  W  G  L  E  L  S  *  S  E  Q  L  K  L  C  H  Q  L  S  L  L  T  S  R  F  R  K  E  L  P  I  I  V  V  S  V  L  Y  R  K  H  P  M  V  F  R  C  K  T  K  E  T  T  N  G  F  S  *  I  I  F  F  I  *  Q  E  T  S  L  L  Q  Q  H  Y  W  G  *  P  S  N  *  P  F  T  I  S  C  I  R  A  L  L  F  F  H  S  A  P  S  T  C  I  G  E  S  S  L  S  T  I  F  S  *  Q  C  P  Y  A  T  P  N  R  F  Q  S  K  H  W  L  I  *  K  K  W  *  R  D  Q  N  H  I  Y  S  L  S  *  R  S  W  *  Q  Q  K  E  Q  K  E  A  I  I  Y  I  R  Q  S  Y  K  C  G  G  D  P  *  F  F  V  </first_frame>
            <second_frame>  D  Q  Q  N  L  T  V  H  P  V  L  G  I  L  K  G  M  V  A  C  S  P  S  I  Q  I  N  Q  A  I  P  R  P  Q  V  C  P  P  H  F  S  H  Q  I  D  S  V  Q  Q  N  C  L  G  A  I  K  Q  S  P  F  T  L  Y  N  Q  K  A  N  F  E  E  P  F  P  G  G  Y  K  S  F  T  I  S  P  Y  G  P  V  P  T  L  M  H  H  Y  S  S  Q  N  G  G  S  S  S  L  D  L  N  S  S  S  C  A  I  N  F  P  Y  S  R  L  D  S  G  R  N  F  R  S  S  W  S  Q  F  S  T  E  S  T  P  W  F  S  D  A  K  Q  K  K  L  L  M  D  F  H  E  L  Y  S  S  S  D  R  K  H  H  Y  C  S  S  I  T  G  D  S  R  Q  T  D  P  S  L  Y  L  A  S  E  R  F  C  S  F  T  Q  R  P  Q  H  A  L  G  N  P  V  S  L  P  S  L  A  N  N  V  P  M  P  L  Q  I  G  S  R  V  N  T  G  S  Y  K  R  N  G  D  V  T  K  I  I  S  T  P  C  L  R  D  L  G  D  S  R  K  S  K  K  R  P  L  S  T  S  D  N  R  T  N  V  A  E  I  P  N  F  L  F </second_frame>
            <third_frame>   I  N  K  I  S  P  C  I  L  C  W  E  Y  *  K  A  W  L  L  A  L  L  V  S  K  S  I  R  P  F  Q  G  L  K  F  V  L  L  T  S  V  T  K  L  I  R  C  S  K  I  V  *  V  Q  S  N  K  A  L  S  P  C  I  I  R  K  Q  I  L  R  S  L  F  Q  V  D  I  N  L  S  Q  S  A  H  M  D  L  Y  Q  H  *  C  I  I  T  P  A  R  M  G  A  R  A  L  L  I  *  T  A  Q  A  V  P  S  T  F  L  T  H  V  *  I  P  E  G  T  S  D  H  R  G  L  S  S  L  Q  K  A  P  H  G  F  Q  M  Q  N  K  R  N  Y  *  W  I  F  M  N  Y  I  L  H  L  T  G  N  I  I  T  A  A  A  L  L  G  I  A  V  K  L  T  L  H  Y  I  L  H  Q  S  A  S  V  L  S  L  S  A  L  N  M  H  W  G  I  Q  S  L  Y  H  L  *  L  T  M  S  L  C  H  S  K  *  V  P  E  *  T  L  A  H  I  K  E  M  V  T  *  P  K  S  Y  L  L  L  V  L  E  I  L  V  T  A  E  R  A  K  R  G  H  Y  L  H  Q  T  I  V  Q  M  W  R  R  S  L  I  F  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0104D24.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="832" stop="11"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DQQNLTVHPVLGILKGMVACSPSIQINQAIPRPQVCPPHFSHQIDSVQQNCLGAIKQSPFTLYNQKANFEEPFPGGYKSFTISPYGPVPTLMHHYSSQNGGSSSLDLNSSSCAINFPYSRLDSGRNFRSSWSQFSTESTPWFSDAKQKKLLMDFHELYSSSDRKHHYCSSITGDSRQTDPSLYLASERFCSFTQRPQHALGNPVSLPSLANNVPMPLQIGSRVNTGSYKRNGDVTKIISTPCLRDLGDSRKSKKRPLSTSDNRTNVAEIPNFLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="19869" PGL_stop="20594"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19869" e_stop="20594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="19869" e_stop="20594" e_length="726"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19869" stop="20594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597636" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGGTGTCATTGTTGTACACAGCTAAAACAGCCTATAGGTTGTTGAGCTCCAAAGCTACATGGGGGTGTCAAGTTAGTGCAAAGAGTAAGGTAAAAAGTTGTAGAAGTGAACTCATAGGTACAAAAAAAACTAAAGTGAAGTTAACTGAGCAGCAAAATCAAATCTTGGAAGCAATTTCAAATGGAAATTCTGTTTTCATTACTGGGTCAGCAGGGACCGGAAAAACCTATTTACTTCAGCATATAATCACTAAACTTAAGAAGATTCATGGGAAATCTCGGGTTTTCGTTACAGCTTCAACTGGGGTTGCTGCTTGTTCCCTCAATGGGCAAACCCTTCATTCTTTTGCTGGAATTGGACTTGGTGATGCTAGTTGTGTGGATTTGCTATCTAGGGTTTCGTTGGATAAGAGAGCGTATCGAAGATGGAATAAAGTTAGGGCTTTGGTTATCGATGAGATTAGTATGGTTAGTGGTGAGGTTTTCGACAATCTTGAGTTCATTGCAAGGAGCATTAGAAGTGAAGAACTTGGCTGTGAGGAGAAGATTTGGGGTGGGATACAATTAGTTGTGAGTGGAGACTTTTTTCAGCTTCCACCAGTAATTAATAAGAAGGGACAACAGAAGGAATTTGCTTTTGAAGCTGATTGTTGGAATGCTAGTTTTGACGAACAAATAGAACTTAAAACTATCTTTAGGCAGTCTGATGCTCAGCTTATAAAACT</gDNA_template>
            <first_frame> E  G  V  I  V  V  H  S  *  N  S  L  *  V  V  E  L  Q  S  Y  M  G  V  S  S  *  C  K  E  *  G  K  K  L  *  K  *  T  H  R  Y  K  K  N  *  S  E  V  N  *  A  A  K  S  N  L  G  S  N  F  K  W  K  F  C  F  H  Y  W  V  S  R  D  R  K  N  L  F  T  S  A  Y  N  H  *  T  *  E  D  S  W  E  I  S  G  F  R  Y  S  F  N  W  G  C  C  L  F  P  Q  W  A  N  P  S  F  F  C  W  N  W  T  W  *  C  *  L  C  G  F  A  I  *  G  F  V  G  *  E  S  V  S  K  M  E  *  S  *  G  F  G  Y  R  *  D  *  Y  G  *  W  *  G  F  R  Q  S  *  V  H  C  K  E  H  *  K  *  R  T  W  L  *  G  E  D  L  G  W  D  T  I  S  C  E  W  R  L  F  S  A  S  T  S  N  *  *  E  G  T  T  E  G  I  C  F  *  S  *  L  L  E  C  *  F  *  R  T  N  R  T  *  N  Y  L  *  A  V  *  C  S  A  Y  K  T </first_frame>
            <second_frame>  K  V  S  L  L  Y  T  A  K  T  A  Y  R  L  L  S  S  K  A  T  W  G  C  Q  V  S  A  K  S  K  V  K  S  C  R  S  E  L  I  G  T  K  K  T  K  V  K  L  T  E  Q  Q  N  Q  I  L  E  A  I  S  N  G  N  S  V  F  I  T  G  S  A  G  T  G  K  T  Y  L  L  Q  H  I  I  T  K  L  K  K  I  H  G  K  S  R  V  F  V  T  A  S  T  G  V  A  A  C  S  L  N  G  Q  T  L  H  S  F  A  G  I  G  L  G  D  A  S  C  V  D  L  L  S  R  V  S  L  D  K  R  A  Y  R  R  W  N  K  V  R  A  L  V  I  D  E  I  S  M  V  S  G  E  V  F  D  N  L  E  F  I  A  R  S  I  R  S  E  E  L  G  C  E  E  K  I  W  G  G  I  Q  L  V  V  S  G  D  F  F  Q  L  P  P  V  I  N  K  K  G  Q  Q  K  E  F  A  F  E  A  D  C  W  N  A  S  F  D  E  Q  I  E  L  K  T  I  F  R  Q  S  D  A  Q  L  I  K   </second_frame>
            <third_frame>   R  C  H  C  C  T  Q  L  K  Q  P  I  G  C  *  A  P  K  L  H  G  G  V  K  L  V  Q  R  V  R  *  K  V  V  E  V  N  S  *  V  Q  K  K  L  K  *  S  *  L  S  S  K  I  K  S  W  K  Q  F  Q  M  E  I  L  F  S  L  L  G  Q  Q  G  P  E  K  P  I  Y  F  S  I  *  S  L  N  L  R  R  F  M  G  N  L  G  F  S  L  Q  L  Q  L  G  L  L  L  V  P  S  M  G  K  P  F  I  L  L  L  E  L  D  L  V  M  L  V  V  W  I  C  Y  L  G  F  R  W  I  R  E  R  I  E  D  G  I  K  L  G  L  W  L  S  M  R  L  V  W  L  V  V  R  F  S  T  I  L  S  S  L  Q  G  A  L  E  V  K  N  L  A  V  R  R  R  F  G  V  G  Y  N  *  L  *  V  E  T  F  F  S  F  H  Q  *  L  I  R  R  D  N  R  R  N  L  L  L  K  L  I  V  G  M  L  V  L  T  N  K  *  N  L  K  L  S  L  G  S  L  M  L  S  L  *  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07SLm0104D24.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19870" stop="20592"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVSLLYTAKTAYRLLSSKATWGCQVSAKSKVKSCRSELIGTKKTKVKLTEQQNQILEAISNGNSVFITGSAGTGKTYLLQHIITKLKKIHGKSRVFVTASTGVAACSLNGQTLHSFAGIGLGDASCVDLLSRVSLDKRAYRRWNKVRALVIDEISMVSGEVFDNLEFIARSIRSEELGCEEKIWGGIQLVVSGDFFQLPPVINKKGQQKEFAFEADCWNASFDEQIELKTIFRQSDAQLIK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="25090" PGL_stop="24185"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25090" e_stop="24185"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="25090" e_stop="24185" e_length="906"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25090" stop="24185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582185" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGTTATTCTTTTTTTAATCAATGACCTCTTATAGCTGCACGAAAGCAAAAAAATGAAAAATAAAATAAAAGGAAGCTTGGAGGAAAGAATACCCGCAAATGTCTTTGTTTTATTAATTTATAGCTACATGAAGAGAAAAAAGTATTTATAAGCTAGTAGAAGAAGTACAAACAAATACATATTCAGGTTTGGCCTTTAAACCCTCTGTTATGGGAGGAACTTTGGAACAAAAAGTGAAGAAAATTCCTGTAACATTCCTTCCATAGTCTCTCTGGGAAATTGATTATCAACACTTGCCTATCTGTTCATTATAGTCTCTCTGGGATATTGATTATCAACACTTGCCTATCTGTTCATTCTTACTGCCATGTTTATTATTGTAACAAATGAGGAATGTTGTGTTTGTACTGTTTTAAACTATATATGAAAACAAAAGGATAGTCTCGTGCGCTAACCTCTCGTTACTTAGGGGTCCAGGGAAGGGCTGGAACCATATTGGGTATATGTACACAATCTTACTACTTGGCATTTCAGTAAGAAGTTGTTTCCACAGCTTGAAACAATGACTTTGTGGTTGCAGTACACCACTTATCATTGTGCCAAGCCCACCTTCTATTAAATCATCTTTGAATGAACGCAAAAATATATTTTGACTTCAATCAGTGCCCAATGTAGTCAACTTGGCATTCTTCACAAGTTTTTGTACAGTGTGTGAGCTTCATGACCACTTTCTCAGCTTCTAATTGTGTTACTTGCAGGCATGGGCACTTAATTTTTTTCAGAAACTGAAGGCCGTCTTGAAGTTTGATCATTCAAATTCAAAGAGTCACTGGTCTCGCCCAACCTTCTGATGAGATGTGCTTGCATTGCAGCTACATTTTTGATCGATTAATTCTTTCCAATGT</gDNA_template>
            <first_frame> R  L  F  F  F  *  S  M  T  S  Y  S  C  T  K  A  K  K  *  K  I  K  *  K  E  A  W  R  K  E  Y  P  Q  M  S  L  F  Y  *  F  I  A  T  *  R  E  K  S  I  Y  K  L  V  E  E  V  Q  T  N  T  Y  S  G  L  A  F  K  P  S  V  M  G  G  T  L  E  Q  K  V  K  K  I  P  V  T  F  L  P  *  S  L  W  E  I  D  Y  Q  H  L  P  I  C  S  L  *  S  L  W  D  I  D  Y  Q  H  L  P  I  C  S  F  L  L  P  C  L  L  L  *  Q  M  R  N  V  V  F  V  L  F  *  T  I  Y  E  N  K  R  I  V  S  C  A  N  L  S  L  L  R  G  P  G  K  G  W  N  H  I  G  Y  M  Y  T  I  L  L  L  G  I  S  V  R  S  C  F  H  S  L  K  Q  *  L  C  G  C  S  T  P  L  I  I  V  P  S  P  P  S  I  K  S  S  L  N  E  R  K  N  I  F  *  L  Q  S  V  P  N  V  V  N  L  A  F  F  T  S  F  C  T  V  C  E  L  H  D  H  F  L  S  F  *  L  C  Y  L  Q  A  W  A  L  N  F  F  Q  K  L  K  A  V  L  K  F  D  H  S  N  S  K  S  H  W  S  R  P  T  F  *  *  D  V  L  A  L  Q  L  H  F  *  S  I  N  S  F  Q  C </first_frame>
            <second_frame>  G  Y  S  F  F  N  Q  *  P  L  I  A  A  R  K  Q  K  N  E  K  *  N  K  R  K  L  G  G  K  N  T  R  K  C  L  C  F  I  N  L  *  L  H  E  E  K  K  V  F  I  S  *  *  K  K  Y  K  Q  I  H  I  Q  V  W  P  L  N  P  L  L  W  E  E  L  W  N  K  K  *  R  K  F  L  *  H  S  F  H  S  L  S  G  K  L  I  I  N  T  C  L  S  V  H  Y  S  L  S  G  I  L  I  I  N  T  C  L  S  V  H  S  Y  C  H  V  Y  Y  C  N  K  *  G  M  L  C  L  Y  C  F  K  L  Y  M  K  T  K  G  *  S  R  A  L  T  S  R  Y  L  G  V  Q  G  R  A  G  T  I  L  G  I  C  T  Q  S  Y  Y  L  A  F  Q  *  E  V  V  S  T  A  *  N  N  D  F  V  V  A  V  H  H  L  S  L  C  Q  A  H  L  L  L  N  H  L  *  M  N  A  K  I  Y  F  D  F  N  Q  C  P  M  *  S  T  W  H  S  S  Q  V  F  V  Q  C  V  S  F  M  T  T  F  S  A  S  N  C  V  T  C  R  H  G  H  L  I  F  F  R  N  *  R  P  S  *  S  L  I  I  Q  I  Q  R  V  T  G  L  A  Q  P  S  D  E  M  C  L  H  C  S  Y  I  F  D  R  L  I  L  S  N   </second_frame>
            <third_frame>   V  I  L  F  L  I  N  D  L  L  *  L  H  E  S  K  K  M  K  N  K  I  K  G  S  L  E  E  R  I  P  A  N  V  F  V  L  L  I  Y  S  Y  M  K  R  K  K  Y  L  *  A  S  R  R  S  T  N  K  Y  I  F  R  F  G  L  *  T  L  C  Y  G  R  N  F  G  T  K  S  E  E  N  S  C  N  I  P  S  I  V  S  L  G  N  *  L  S  T  L  A  Y  L  F  I  I  V  S  L  G  Y  *  L  S  T  L  A  Y  L  F  I  L  T  A  M  F  I  I  V  T  N  E  E  C  C  V  C  T  V  L  N  Y  I  *  K  Q  K  D  S  L  V  R  *  P  L  V  T  *  G  S  R  E  G  L  E  P  Y  W  V  Y  V  H  N  L  T  T  W  H  F  S  K  K  L  F  P  Q  L  E  T  M  T  L  W  L  Q  Y  T  T  Y  H  C  A  K  P  T  F  Y  *  I  I  F  E  *  T  Q  K  Y  I  L  T  S  I  S  A  Q  C  S  Q  L  G  I  L  H  K  F  L  Y  S  V  *  A  S  *  P  L  S  Q  L  L  I  V  L  L  A  G  M  G  T  *  F  F  S  E  T  E  G  R  L  E  V  *  S  F  K  F  K  E  S  L  V  S  P  N  L  L  M  R  C  A  C  I  A  A  T  F  L  I  D  *  F  F  P  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07SLm0104D24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 13 chains have been computed
$ 
$ memory statistics:
$ 5608 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 1869 bytes was the average size of a spliced alignment
$ 7880 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2626 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 14 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 21:49:02
-->
