<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-10 08:41:40"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0002D20-Ljrqp/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-prOSgU/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-prOSgU/sgn_marker_seqs" ref_id="SGN-M4716-2" ref_strand="+" ref_description="SGN-M4716-2 C2_At2g24270-2 [cosii_markers]">
      <seq>tcactctaaattcacccaaaaaaaataataaaaatccaccattttctcttcttatccttttttttttttaattattgtgaaaaaaaatctaaaatttggtgtaaaaatggctggaaatggagtatttgcagaaataattgatggagaagtgtacaaatattattgtgaaggagaatggaaaaaatcagcttctggaaaatctgttgctattattaatcctactacaagaaagacacaatacaaagttcaagcatgtacacaagaagaggtgaacaaagtaatggaaatagcaaaagcagcacaaaaatcatgggctaaaacaccactatggaaaagagcagagttacttcataaggcagctgcaattttgaaagaacacaaagcccctattgctgaatgccttgttaaagaaattgcaaaaccagctaaagatgctgtcaccgaggttgtgagatctggtgatttggtttcttacactgctgaagaaggagttagaattctaggggagggtaagttcttggtatctgatagtttccctggaaatgaaaggaccaaatactgtctaacatccaagataccgttgggtgtgattctggcgattcctcctttcaactatccggtcaatcttgccgtctccaagattgctcctgcactgattgctggaaactctttagtcctcaagcctccaactcagggtgctgtggctgccctgcatatggtgcattgcttccacttagctggattccctaaaggccttatcagttgtgtgaccggaaaaggttctgaaatcggagattttctcactatgcatcctggagtaaactgtataagcttcactggtggagacaccggtgttgcaatctcgaagaaagcaggaatggtccctctacagatggagctgggaggaaaggatgcttgtatcgtgctcgaggatgctgatttagatttggctgctggaaacattgtgaaaggaggattttcttacagtggtcaaagatgcacagctgttaaggtcgtgttggtgatggaatctgttgctgacattcttgttgagaaggtaaatgccaaagtggcaaagttaaccgttgggccacctgaagataattgtgatatcactccagttgtctccgagtcatccgcaaatttcatcgaggggttggtcatggacgcaaaggagaaagatgcaacattttgccagccatacaagagagaaggcaaccttatctggcccttgttgttagacaatgttaggccggacatgagaatcgcttgggaagaaccctttggtccagttttgcccgttattcggataaactcagtcgaagaaggaattcaccactgcaatgctagcaatttcggtctgcagggttgtgtgttcaccaaagacatcaacaaagcaatactgatcagtgatgcaatggaaaccggaaccgttcagattaactcagctcctgctcgtggaccggatcattttccgttccagggtattaaggacagcggaattggatcacaagggatcactaacagtattaacatgatgactaaagtgaagaccactgtgatcaatttgccaaccccttcttatactatggggtaaattaatcactgttttttgctttagaaatttgacaaaaataattaagaatccatgttgtggatgttaataagctcacaccaattattgttcatttcttgaccttatgaagattaatattggtggattagtatttagcattattttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0002D20-Ljrqp/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="105410" stop="16045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21583" g_stop="21530" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.593"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21529" i_stop="21412" i_length="118">
            <donor d_prob="0.000" d_score="0.62"/>
            <acceptor a_prob="0.000" a_score="0.53"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21411" g_stop="21300" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="162" r_length="110" r_score="0.545"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21299" i_stop="21211" i_length="89">
            <donor d_prob="0.782" d_score="0.55"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21210" g_stop="21122" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="251" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21121" i_stop="20495" i_length="627">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20494" g_stop="20301" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="445" r_length="194" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20300" i_stop="19892" i_length="409">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19891" g_stop="19763" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="574" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19762" i_stop="18893" i_length="870">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18892" g_stop="18773" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="694" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18772" i_stop="18444" i_length="329">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18443" g_stop="18307" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="831" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18306" i_stop="17973" i_length="334">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17972" g_stop="17817" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="832" r_stop="987" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="17816" i_stop="17506" i_length="311">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="17505" g_stop="17127" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="988" r_stop="1366" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="17126" i_stop="16818" i_length="309">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="16817" g_stop="16701" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1367" r_stop="1483" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="16700" i_stop="16604" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="16603" g_stop="16345" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1484" r_stop="1742" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1747" polyA_stop="1795"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-M4716-2" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>1746</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M4716-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21583" e_stop="21530"/>
          <exon e_start="21411" e_stop="21300"/>
          <exon e_start="21210" e_stop="21122"/>
          <exon e_start="20494" e_stop="20301"/>
          <exon e_start="19891" e_stop="19763"/>
          <exon e_start="18892" e_stop="18773"/>
          <exon e_start="18443" e_stop="18307"/>
          <exon e_start="17972" e_stop="17817"/>
          <exon e_start="17505" e_stop="17127"/>
          <exon e_start="16817" e_stop="16701"/>
          <exon e_start="16603" e_stop="16345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCA-ACTAAATATCACCATCGATAAATCATAATGTATTTACAAGTTAAGTGTTGTGTTTGGCTTAGAATTAATCGATCAATCGAACACCCTTAAACATTCCCCTTCCCCTCGAAAGTCATAGATGTGTATATATATATATATATATAGTCCGTATATATAACAGGCAAAAAAGTATTTCCCTCTCTCTTTTATTTAGGTTGATCAATCAACTCTAA-TGGCTTTTACAAAGCCTTTATTGGCAAAATCATTCAAAAAAAAGTCAAGGCTACAAGTGCA-AAACACTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAGGTATGTTATTTTTAGAAAAATAAAAATTATCAAGATTGAAAATTTTGTGTGTGTAGAGTAAATATATCAAGATTGATGTTTGTTTGAGATTTTAATGGTTGAAAGGGTAGCGTTTGCGTAACTGGTAAAGTTATTACCACGTAACTGTGACATGGATCAAGTTGCGTACAATAGACTCATGTAGTGTGGTCTTTTCGTGTATCAGACTGTTTCATGTTCTAGGACAGAGACAAGATTTTAACTTTATGGATTCTGAATAGAAAAATGTCATGATGTATAATGAATTTTCTGTCATTTGTTTCTAAGGTTCCTTGAATTTTGTGGATAGTGCTCTGGAATTTGTTGTACGGGTGACAGAATCAAGATTTCAACTTTATGAATTTTGTATTTTAGAACAATAATTACACTATCGTCAGTGTAGTTTAACCTATTATAACATGTTAGTTAACATTTTATTGAGTCGTAGGTAAATGTCATTATGTAAAATTACCGAGTCATGTGAACTCTTTAATAACACATTGATAAAATTTCTTGATTTCGCATCGAGGTACTTTTGCTTGTATTGTATTATTTGGTTTACGTACCAGAACTGATAACATTCGAGATTTGTGAATGTNTATTGTTCAGCATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGGTTAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAGGTACGCTGAATGAGTCCTATGTTGCTCAGACTAATCTAGAAATGTTGCCTGGTGTGTGTCCGATCCTCCAAAAGTAGTGCATTTTTAGAGACTCTGAGCAACATATACGTTGACCTATGTTACTCCGACTCTCCAAAAATACCTCTGGATATGTGTCGGATAATCCTCCAAAAGTAGTGCATTTTTGGAGGATCTAACACAGGTGCAACAACGTTTTTGGAGAGTCCAAGCAACATAGATGCTGATGGTGTAAAAATCTTGGATGTATTAACTAGTGATAGCATGTTGGTAATCATGTTTGTCTGATATTATTTGTCAGTACATAGAACTTGAAACTCGTAAAATATTGTATGAATTCTGAAAAAAGTTAATTGCTTTATCGGCTGATAACGTTGTGAATTTGATGAAGGTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAGGTACATTTCTTGACTAATCGATTTAATATTGCTATATTATAATGTCATTTAGTATAAAGTATCGTCGGTTTGCGTTGATTGTCAAAAGATGAAGATATTTTAAGGACTTTGTCTACAACTTAACTGGTTTCATTTCATTGGATGACAAAGCATGTTGTCTTTATACGTATATCAAATGTTGGATCGATGAGCTTGGATTACGACTTTGTGTCACCCATCGGTAATGTTGTTGCAGTGGTATTACATATAGCCAGGACATTTAATTTGACTTAGGCGAATAAAATAATTCCGGAAAACCAATTAAGCTCTTACAAGTTACGAAAAGAAGAAGAATATAACTAAGACGGCAATGTGAGTTTTCTTTTCTAAGTATTAAATAAAGAAGTCAAGGAAGAGATGTTATGAATTGACAGGATGTAACCACTGTCCTATAGAGAATATGGTTAGGGAATATTACTATACTTATTTGTGTGGTTATAATCATTAGATATAGAATCGTATCATTTTTTTCGGAACAAACTAGAAAGGAAAGTAAAGACATCACCTATAAAGACGCCCCCTCAAGACAAGTGTTTTTTGTTTGTCTATTAAAAGTAAGGCAACATAAACCGATTTCAAGTCAGACCGGTTGTGAGAACATTTTTTCCCCTGAATCTGTATTAGTCCAAAGATAAATCGAAAAAAAAATAGATGAAAATGTAGAAACTCATAACATCAGCCTATAACCACTCATTGTCTCATATTATTTGTAAACTTTCCATTATCAGTAGCAAAATACAGATAGGAACTCACATTTTATACTTAAAATGTTGATATTAAGTTTATCGGTAATATACTGATTATTATAACCTAAACGTCCGTGGAGTACAGATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTTCAACTATCCGGTCAATCTTGCCGTCTCCAAGATTGCTCCTGCACTGATTGCTGGAAACTCTTTAGTCCTCAAGCCTCCAACTCAGGTTACTTCACTAGAATTCGATCTCAAATTAGCTATATTATAATGCATCAAATTCTTACTATCGATTTATCAATAATATTCTATATGATGACGACACATCTCCTTTACCTTTTTTGTTACGACGTTCTTTACCATTAACCACCTTCTCAATTAGTTAAATTTTGTCCCTTGCAAAACTTCAAACATATTTTCAAGTAATTCACGTTTAAACACAACTTCAATTTCCAAATACCTGTTTTCAATTTAACTTCAGATGCTATGTTTTTTTCCCCAAGTATTACCAAATTCATGTTCAAACGTCTACTTACTTCGAGTGATCATTCACACCAGGGTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCTAAAGGCCTTATCAGTTGTGTGACCGGAAAAGGTTCTGAAATCGGAGATTTTCTCACTATGCATCCTGGAGTAAACTGTATAAGGTACTCCCTCTTTTTCAATTTGTTTGTTTGATTTTGACTTGAAACGGAGTTCTCTTTAATCTTGTGGTCTTAAAAATGCTTCGTGGAAAGCTGGAATTAAAGAGTTGTCAATAACGAAAAGAAATGTTCATTTTTAAACAGACTAAAAAGAAATGTAAGACAAACAAATTAAACAATCGGGAATATATTTTTATCTCATTGTTTCATTTGTTCGATTTATGTTTTTTCTTAGACTGCAACCGATATACTAAAAGAGTAAACAAGTTCCTTAGTCTCGTTCTTGATATTTGTGTGTCCACACATAACCATACACTCGTCTTTCTTGTTTTATCAGCTTCACTGGTGGAGACACCGGTGTTGCAATCTCGAAGAAAGCAGGAATGGTCCCTCTACAGATGGAGCTGGGAGGAAAGGATGCTTGTATCGTGCTCGAGGATGCTGATTTAGATTTGGCTGCTGGAAACATTGTGAAAGGAGGATTTTCTTACAGGTGTGTGAATTTTATTTTCGTTATCAAAACAGAACATGCTAGTGCTTTTTCCTTAACAATCAAGTTGTCGGAACTGCATTGTATAAGGAAATCAAAACGAATGTATGCATTTTATGAAATCGACATATTAGTAGGCTTTTCTAATGATATAATGACTTCATGGATTGCCTGATTTACTATCACTAAACTTGATCACATTTCTGTTCGTGTGTTTGATGAACTTCTCTTTGATTCATTAATCATCAAAGATATGAATGCAATGTAGAGTTCATATTGCACGTATAATATGTCGATATCCTTGTTTATCACAGTGGTCAAAGATGCACAGCTGTTAAGGTCGTGTTGGTGATGGAATCTGTTGCTGACATTCTTGTTGAGAAGGTAAATGCCAAAGTGGCAAAGTTAACCGTTGGGCCACCTGAAGATAATTGTGATATCACTCCAGTTGTCTCCGAGTCATCCGCAAATTTCATCGAGGGGTTGGTCATGGACGCAAAGGAGAAAGATGCAACATTTTGCCAGCCATACAAGAGAGAAGGCAACCTTATCTGGCCCTTGTTGTTAGACAATGTTAGGCCGGACATGAGAATCGCTTGGGAAGAACCCTTTGGTCCAGTTTTGCCCGTTATTCGGATAAACTCAGTCGAAGAAGGAATTCACCACTGCAATGCTAGCAATTTCGGTCTGCAGGTACTTCTTTCTCTCCATCTATCACAAGAAAAAAGTCACCCGTCTTTCGTTTGGAGGGATTAGAAAGAGATAATCTCCGCATAACCAATGTAACGTTTGATTCGCAGTATAAGAGAAATAATCCCATAGTAAATAATACTCGCATTACGTTTTACAAGAACCTAACATAACATTCAACATATAGGTTATTCACCCTATAATGATTCCGTCCTTTCATTATTATTCCCTGCATAAACAATTACTAAACGACATAACTAGCGCGTGAACCAAACGACTCCGTGGTATTTGACATTTGACTCTTAACTACAGGGTTGTGTGTTCACCAAAGACATCAACAAAGCAATACTGATCAGTGATGCAATGGAAACCGGAACCGTTCAGATTAACTCAGCTCCTGCTCGTGGACCGGATCATTTTCCGTTCCAGGTAATTAAACTCCAAATTCAACATCGCGAATTACATAATCTTGATTATCTTTGCGATAATTTCGTAGTAATTAAGGTGATTAATTTCGTTTTAACAGGGTATTAAGGACAGCGGAATTGGATCACAAGGGATCACTAACAGTATTAACATGATGACTAAAGTGAAGACCACTGTGATCAATTTGCCAACCCCTTCTTATACTATGGGGTAAATTAATCACTGTTTTTTGCTTTAGAAATTTGACAAAAATAATTAAGAATCCATGTTGTGGATGTTAATAAGCTCACACCAATTATTGTTCATTTCTTGACCTTATGAAGATTAATATTGGTGGATTAGTATTTAGCATTATTTTC</genome_strand>
        <mrna_strand>TCACTCTAAAT-TCACCCAAAAAAAATAATAAAA-ATCCACCA-TTTTCTCTTCT......................................................................................................................TA-TCCTTTTTTTTTTTTAATTATTGTGAAAAAAAATCTAAAATTTGGTGTAAAAATGGCTGGAAATGGAGTAT-TTGCAGAAATAATTGATGG--AGAAGTGTACAAATATTA.........................................................................................TTGTGAAGGAGAATGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGTTAAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTTCAACTATCCGGTCAATCTTGCCGTCTCCAAGATTGCTCCTGCACTGATTGCTGGAAACTCTTTAGTCCTCAAGCCTCCAACTCAG.........................................................................................................................................................................................................................................................................................................................................GGTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCTAAAGGCCTTATCAGTTGTGTGACCGGAAAAGGTTCTGAAATCGGAGATTTTCTCACTATGCATCCTGGAGTAAACTGTATAAG..............................................................................................................................................................................................................................................................................................................................................CTTCACTGGTGGAGACACCGGTGTTGCAATCTCGAAGAAAGCAGGAATGGTCCCTCTACAGATGGAGCTGGGAGGAAAGGATGCTTGTATCGTGCTCGAGGATGCTGATTTAGATTTGGCTGCTGGAAACATTGTGAAAGGAGGATTTTCTTACAG.......................................................................................................................................................................................................................................................................................................................TGGTCAAAGATGCACAGCTGTTAAGGTCGTGTTGGTGATGGAATCTGTTGCTGACATTCTTGTTGAGAAGGTAAATGCCAAAGTGGCAAAGTTAACCGTTGGGCCACCTGAAGATAATTGTGATATCACTCCAGTTGTCTCCGAGTCATCCGCAAATTTCATCGAGGGGTTGGTCATGGACGCAAAGGAGAAAGATGCAACATTTTGCCAGCCATACAAGAGAGAAGGCAACCTTATCTGGCCCTTGTTGTTAGACAATGTTAGGCCGGACATGAGAATCGCTTGGGAAGAACCCTTTGGTCCAGTTTTGCCCGTTATTCGGATAAACTCAGTCGAAGAAGGAATTCACCACTGCAATGCTAGCAATTTCGGTCTGCAG.....................................................................................................................................................................................................................................................................................................................GGTTGTGTGTTCACCAAAGACATCAACAAAGCAATACTGATCAGTGATGCAATGGAAACCGGAACCGTTCAGATTAACTCAGCTCCTGCTCGTGGACCGGATCATTTTCCGTTCCAG.................................................................................................GGTATTAAGGACAGCGGAATTGGATCACAAGGGATCACTAACAGTATTAACATGATGACTAAAGTGAAGACCACTGTGATCAATTTGCCAACCCCTTCTTATACTATGGGGTAAATTAATCACTGTTTTTTGCTTTAGAAATTTGACAAAAATAATTAAGAATCCATGTTGTGGATGTTAATAAGCTCACACCAATTATTGTTCATTTCTTGACCTTATGAAGATTAATATTGGTGGATTAGTATTTAGCATTATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-prOSgU/sgn_marker_seqs" ref_id="SGN-M4716-3" ref_strand="+" ref_description="SGN-M4716-3 C2_At2g24270-3 [cosii_markers]">
      <seq>caaaaaaaatcccaccattttctcttcttatcctttttttttaattattgtgaaaaaaattaaattttggtgtaaaaatggctggaaatggagtatttgcagaaataattgatggagaagtgtacaaatattattgtgaaggagaatggagaaaatcagcttctggaaaatctgttgctattattaatcccactacaagaaaaacacaatacaaagttcaagcatgtacacaagaagaggtgaacaaagtaatggaaatagcaaaagtagcacaaaaatcatgggctaaaacaccactatggaaaagagcagagttacttcataaggcagctgcaattttgaaagaacacaaagcccctattgctgaatgccttgttaaagaaattgcaaaaccagctaaagatgctgtcaccgaggttgtgaggtctggagatctggtttcttacactgctgaagaaggagttagaattctaggggagggtaagttcttggtatctgatagtttccctggaaatgaaaggaccaaatactgtctaacatccaagataccgttgggtgtgattctagccattcctcctttcaactatccggtcaatcttgccgtctccaagattgctcctgcactgattgctggaaactctttagtcctcaagcctccaacacagggtgctgtggctgccctgcatatggtgcattgcttccacttagctggattccctaaaggccttatcagttgtgtgaccggaaaaggttctgaaatcggagattttctcactatgcatcctggagtaaactgtataagcttcactggtggagacaccggtgttgcaatctcgaagaaagcaggaatggtccccctacagatggagctgggaggaaaggatgcttgtatcgtgctcgaggatgctgatttagatttggctgctggaaacattgtgaaaggaggattttcttacagtggtcaaagatgcacagccgttaaggtcgtgttggtgatggaatccgttgctgacactcttgtagagaaggtaaatgccaaagtggcaaagttaaccgttgggccacccgaagatgattgtgatatcactccagttgtctccgagtcatccgcgaatttcatcgaggggttggtcatggacgcaaaggagaaagatgcaacattttgccagccatacaagagagaaggcaaccttatctggcccttgttgttagacaatgttaggccagacatgagaatcgcttgggaagaacctttcggtccagttttgcccgttattcggatcaactcagtcgaagaaggaattcaccactgcaatgctagcaatttcggtctgcagggttgtgtgttcaccaaagacatcaacaaagcaatactgatcagtgatgcaatggaaaccggaaccgttcagattaactcagctccagctcgtggaccggatcattttccattccagggtattaaggacagtggaattggatcacaagggattactaacagtattaacatgatgactaaagtgaagaccactgtgatcaatttgccaaccccttcgtatactatggggtaaattaatcactatttgctttagaaatttgacaataatgattaagaatctatgttgtagatgttaatgagttgaaaccaattattgttcatttcttcctttgagcttatgaagattaatgttggtggattaatattagcattattctaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0002D20-Ljrqp/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21497" stop="16093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21298" g_stop="21122" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="222" r_length="177" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21121" i_stop="20495" i_length="627">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20494" g_stop="20301" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="416" r_length="194" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20300" i_stop="19892" i_length="409">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19891" g_stop="19763" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="545" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19762" i_stop="18893" i_length="870">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18892" g_stop="18773" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="665" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18772" i_stop="18444" i_length="329">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18443" g_stop="18307" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="802" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18306" i_stop="17973" i_length="334">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17972" g_stop="17817" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="803" r_stop="958" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17816" i_stop="17506" i_length="311">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17505" g_stop="17127" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="959" r_stop="1337" r_length="379" r_score="0.971"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17126" i_stop="16818" i_length="309">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16817" g_stop="16701" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1338" r_stop="1454" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="16700" i_stop="16604" i_length="97">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="16603" g_stop="16393" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1455" r_stop="1662" r_length="208" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1714" polyA_stop="1726"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-M4716-3" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>1620</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M4716-3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21298" e_stop="21122"/>
          <exon e_start="20494" e_stop="20301"/>
          <exon e_start="19891" e_stop="19763"/>
          <exon e_start="18892" e_stop="18773"/>
          <exon e_start="18443" e_stop="18307"/>
          <exon e_start="17972" e_stop="17817"/>
          <exon e_start="17505" e_stop="17127"/>
          <exon e_start="16817" e_stop="16701"/>
          <exon e_start="16603" e_stop="16393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAGGTATGTTATTTTTAGAAAAATAAAAATTATCAAGATTGAAAATTTTGTGTGTGTAGAGTAAATATATCAAGATTGATGTTTGTTTGAGATTTTAATGGTTGAAAGGGTAGCGTTTGCGTAACTGGTAAAGTTATTACCACGTAACTGTGACATGGATCAAGTTGCGTACAATAGACTCATGTAGTGTGGTCTTTTCGTGTATCAGACTGTTTCATGTTCTAGGACAGAGACAAGATTTTAACTTTATGGATTCTGAATAGAAAAATGTCATGATGTATAATGAATTTTCTGTCATTTGTTTCTAAGGTTCCTTGAATTTTGTGGATAGTGCTCTGGAATTTGTTGTACGGGTGACAGAATCAAGATTTCAACTTTATGAATTTTGTATTTTAGAACAATAATTACACTATCGTCAGTGTAGTTTAACCTATTATAACATGTTAGTTAACATTTTATTGAGTCGTAGGTAAATGTCATTATGTAAAATTACCGAGTCATGTGAACTCTTTAATAACACATTGATAAAATTTCTTGATTTCGCATCGAGGTACTTTTGCTTGTATTGTATTATTTGGTTTACGTACCAGAACTGATAACATTCGAGATTTGTGAATGTNTATTGTTCAGCATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGGTTAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAGGTACGCTGAATGAGTCCTATGTTGCTCAGACTAATCTAGAAATGTTGCCTGGTGTGTGTCCGATCCTCCAAAAGTAGTGCATTTTTAGAGACTCTGAGCAACATATACGTTGACCTATGTTACTCCGACTCTCCAAAAATACCTCTGGATATGTGTCGGATAATCCTCCAAAAGTAGTGCATTTTTGGAGGATCTAACACAGGTGCAACAACGTTTTTGGAGAGTCCAAGCAACATAGATGCTGATGGTGTAAAAATCTTGGATGTATTAACTAGTGATAGCATGTTGGTAATCATGTTTGTCTGATATTATTTGTCAGTACATAGAACTTGAAACTCGTAAAATATTGTATGAATTCTGAAAAAAGTTAATTGCTTTATCGGCTGATAACGTTGTGAATTTGATGAAGGTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAGGTACATTTCTTGACTAATCGATTTAATATTGCTATATTATAATGTCATTTAGTATAAAGTATCGTCGGTTTGCGTTGATTGTCAAAAGATGAAGATATTTTAAGGACTTTGTCTACAACTTAACTGGTTTCATTTCATTGGATGACAAAGCATGTTGTCTTTATACGTATATCAAATGTTGGATCGATGAGCTTGGATTACGACTTTGTGTCACCCATCGGTAATGTTGTTGCAGTGGTATTACATATAGCCAGGACATTTAATTTGACTTAGGCGAATAAAATAATTCCGGAAAACCAATTAAGCTCTTACAAGTTACGAAAAGAAGAAGAATATAACTAAGACGGCAATGTGAGTTTTCTTTTCTAAGTATTAAATAAAGAAGTCAAGGAAGAGATGTTATGAATTGACAGGATGTAACCACTGTCCTATAGAGAATATGGTTAGGGAATATTACTATACTTATTTGTGTGGTTATAATCATTAGATATAGAATCGTATCATTTTTTTCGGAACAAACTAGAAAGGAAAGTAAAGACATCACCTATAAAGACGCCCCCTCAAGACAAGTGTTTTTTGTTTGTCTATTAAAAGTAAGGCAACATAAACCGATTTCAAGTCAGACCGGTTGTGAGAACATTTTTTCCCCTGAATCTGTATTAGTCCAAAGATAAATCGAAAAAAAAATAGATGAAAATGTAGAAACTCATAACATCAGCCTATAACCACTCATTGTCTCATATTATTTGTAAACTTTCCATTATCAGTAGCAAAATACAGATAGGAACTCACATTTTATACTTAAAATGTTGATATTAAGTTTATCGGTAATATACTGATTATTATAACCTAAACGTCCGTGGAGTACAGATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTTCAACTATCCGGTCAATCTTGCCGTCTCCAAGATTGCTCCTGCACTGATTGCTGGAAACTCTTTAGTCCTCAAGCCTCCAACTCAGGTTACTTCACTAGAATTCGATCTCAAATTAGCTATATTATAATGCATCAAATTCTTACTATCGATTTATCAATAATATTCTATATGATGACGACACATCTCCTTTACCTTTTTTGTTACGACGTTCTTTACCATTAACCACCTTCTCAATTAGTTAAATTTTGTCCCTTGCAAAACTTCAAACATATTTTCAAGTAATTCACGTTTAAACACAACTTCAATTTCCAAATACCTGTTTTCAATTTAACTTCAGATGCTATGTTTTTTTCCCCAAGTATTACCAAATTCATGTTCAAACGTCTACTTACTTCGAGTGATCATTCACACCAGGGTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCTAAAGGCCTTATCAGTTGTGTGACCGGAAAAGGTTCTGAAATCGGAGATTTTCTCACTATGCATCCTGGAGTAAACTGTATAAGGTACTCCCTCTTTTTCAATTTGTTTGTTTGATTTTGACTTGAAACGGAGTTCTCTTTAATCTTGTGGTCTTAAAAATGCTTCGTGGAAAGCTGGAATTAAAGAGTTGTCAATAACGAAAAGAAATGTTCATTTTTAAACAGACTAAAAAGAAATGTAAGACAAACAAATTAAACAATCGGGAATATATTTTTATCTCATTGTTTCATTTGTTCGATTTATGTTTTTTCTTAGACTGCAACCGATATACTAAAAGAGTAAACAAGTTCCTTAGTCTCGTTCTTGATATTTGTGTGTCCACACATAACCATACACTCGTCTTTCTTGTTTTATCAGCTTCACTGGTGGAGACACCGGTGTTGCAATCTCGAAGAAAGCAGGAATGGTCCCTCTACAGATGGAGCTGGGAGGAAAGGATGCTTGTATCGTGCTCGAGGATGCTGATTTAGATTTGGCTGCTGGAAACATTGTGAAAGGAGGATTTTCTTACAGGTGTGTGAATTTTATTTTCGTTATCAAAACAGAACATGCTAGTGCTTTTTCCTTAACAATCAAGTTGTCGGAACTGCATTGTATAAGGAAATCAAAACGAATGTATGCATTTTATGAAATCGACATATTAGTAGGCTTTTCTAATGATATAATGACTTCATGGATTGCCTGATTTACTATCACTAAACTTGATCACATTTCTGTTCGTGTGTTTGATGAACTTCTCTTTGATTCATTAATCATCAAAGATATGAATGCAATGTAGAGTTCATATTGCACGTATAATATGTCGATATCCTTGTTTATCACAGTGGTCAAAGATGCACAGCTGTTAAGGTCGTGTTGGTGATGGAATCTGTTGCTGACATTCTTGTTGAGAAGGTAAATGCCAAAGTGGCAAAGTTAACCGTTGGGCCACCTGAAGATAATTGTGATATCACTCCAGTTGTCTCCGAGTCATCCGCAAATTTCATCGAGGGGTTGGTCATGGACGCAAAGGAGAAAGATGCAACATTTTGCCAGCCATACAAGAGAGAAGGCAACCTTATCTGGCCCTTGTTGTTAGACAATGTTAGGCCGGACATGAGAATCGCTTGGGAAGAACCCTTTGGTCCAGTTTTGCCCGTTATTCGGATAAACTCAGTCGAAGAAGGAATTCACCACTGCAATGCTAGCAATTTCGGTCTGCAGGTACTTCTTTCTCTCCATCTATCACAAGAAAAAAGTCACCCGTCTTTCGTTTGGAGGGATTAGAAAGAGATAATCTCCGCATAACCAATGTAACGTTTGATTCGCAGTATAAGAGAAATAATCCCATAGTAAATAATACTCGCATTACGTTTTACAAGAACCTAACATAACATTCAACATATAGGTTATTCACCCTATAATGATTCCGTCCTTTCATTATTATTCCCTGCATAAACAATTACTAAACGACATAACTAGCGCGTGAACCAAACGACTCCGTGGTATTTGACATTTGACTCTTAACTACAGGGTTGTGTGTTCACCAAAGACATCAACAAAGCAATACTGATCAGTGATGCAATGGAAACCGGAACCGTTCAGATTAACTCAGCTCCTGCTCGTGGACCGGATCATTTTCCGTTCCAGGTAATTAAACTCCAAATTCAACATCGCGAATTACATAATCTTGATTATCTTTGCGATAATTTCGTAGTAATTAAGGTGATTAATTTCGTTTTAACAGGGTATTAAGGACAGCGGAATTGGATCACAAGGGATCACTAACAGTATTAACATGATGACTAAAGTGAAGACCACTGTGATCAATTTGCCAACCCCTTCTTATACTATGGGGTAAATTAATCACTGTTTTTTGCTTTAGAAATTTGACAAAAATAATTAAGAATCCATGTTGTGGATGTTAATAAGCTCACACCAATTATTGTTCATTTCTT</genome_strand>
        <mrna_strand>TATTGTGAAAAAAATTAAATTTTGGTGTAAAAATGGCTGGAAATGGAGTATTTGCAGAAATAATTGATGGAGAAGTGTACAAATATTATTGTGAAGGAGAATGGAGAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCCACTACAAGAAAAACACAATACAAAGTTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGTAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGTTAAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGAGGTCTGGAGATCTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCGTTGGGTGTGATTCTAGCCATTCCTCCTTTCAACTATCCGGTCAATCTTGCCGTCTCCAAGATTGCTCCTGCACTGATTGCTGGAAACTCTTTAGTCCTCAAGCCTCCAACACAG.........................................................................................................................................................................................................................................................................................................................................GGTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCTAAAGGCCTTATCAGTTGTGTGACCGGAAAAGGTTCTGAAATCGGAGATTTTCTCACTATGCATCCTGGAGTAAACTGTATAAG..............................................................................................................................................................................................................................................................................................................................................CTTCACTGGTGGAGACACCGGTGTTGCAATCTCGAAGAAAGCAGGAATGGTCCCCCTACAGATGGAGCTGGGAGGAAAGGATGCTTGTATCGTGCTCGAGGATGCTGATTTAGATTTGGCTGCTGGAAACATTGTGAAAGGAGGATTTTCTTACAG.......................................................................................................................................................................................................................................................................................................................TGGTCAAAGATGCACAGCCGTTAAGGTCGTGTTGGTGATGGAATCCGTTGCTGACACTCTTGTAGAGAAGGTAAATGCCAAAGTGGCAAAGTTAACCGTTGGGCCACCCGAAGATGATTGTGATATCACTCCAGTTGTCTCCGAGTCATCCGCGAATTTCATCGAGGGGTTGGTCATGGACGCAAAGGAGAAAGATGCAACATTTTGCCAGCCATACAAGAGAGAAGGCAACCTTATCTGGCCCTTGTTGTTAGACAATGTTAGGCCAGACATGAGAATCGCTTGGGAAGAACCTTTCGGTCCAGTTTTGCCCGTTATTCGGATCAACTCAGTCGAAGAAGGAATTCACCACTGCAATGCTAGCAATTTCGGTCTGCAG.....................................................................................................................................................................................................................................................................................................................GGTTGTGTGTTCACCAAAGACATCAACAAAGCAATACTGATCAGTGATGCAATGGAAACCGGAACCGTTCAGATTAACTCAGCTCCAGCTCGTGGACCGGATCATTTTCCATTCCAG.................................................................................................GGTATTAAGGACAGTGGAATTGGATCACAAGGGATTACTAACAGTATTAACATGATGACTAAAGTGAAGACCACTGTGATCAATTTGCCAACCCCTTCGTATACTATGGGGTAAATTAATCAC---TATTTGCTTTAGAAATTTGACAATAATGATTAAGAATCTATGTTGTAGATGTTAATGAGTTGAAACCAATTATTGTTCATTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-prOSgU/sgn_marker_seqs" ref_id="SGN-M4716" ref_strand="+" ref_description="SGN-M4716 C2_At2g24270 [cosii_markers]">
      <seq>taaaaatctactattttctcttcttatcctattttttttgtaaaaaaaataaaattgtttacataggtaaaaatggctggaaatggagtatttgctgaaataattgatggagaagtgttcagatattattgtgaaggtgaatggaaaaaatcaacttctggaaaatctgttgctattgttaatcctactacaagaaagacacagtacaaagttcaagcatgtacacaagaagaggtgaacaaagtaatggaaatagcaaaagcagcacaaaagacatgggctaaaacaccattgtggaaaagagcagagttacttcataaagcagctgcaatcttgaaagaacacaaagcccctattgctgaatgcctcattaaagaaattgcaaaaccagcgaaagatgctgtcaccgaggttgtgaggtccggagatttagtttcgtacactgctgaagaaggagttagaattctcggtgagggtaagttcttggtatctgatagtttccctggaaatgaaaggaccaaatactgcctgacttccaagatcccgctgggtgttattctagccattcctcctttcaactatccggtcaatcttgccgtctccaagattgctcctgcactgattgctggaaacgctttagttctcaagccgccaactcanggtgctgtggcttgcctgcatatggtgcattgcttccacttagctggattcccgaaaggccttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0002D20-Ljrqp/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21497" stop="18078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21298" g_stop="21122" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="217" r_length="177" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21121" i_stop="20495" i_length="627">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20494" g_stop="20301" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="411" r_length="194" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20300" i_stop="19892" i_length="409">
            <donor d_prob="0.990" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19891" g_stop="19763" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="540" r_length="129" r_score="0.922"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19762" i_stop="18893" i_length="870">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.843" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18892" g_stop="18773" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="660" r_length="120" r_score="0.925"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18772" i_stop="18444" i_length="329">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.830" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18443" g_stop="18378" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="726" r_length="66" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-M4716" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M4716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21298" e_stop="21122"/>
          <exon e_start="20494" e_stop="20301"/>
          <exon e_start="19891" e_stop="19763"/>
          <exon e_start="18892" e_stop="18773"/>
          <exon e_start="18443" e_stop="18378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAGGTATGTTATTTTTAGAAAAATAAAAATTATCAAGATTGAAAATTTTGTGTGTGTAGAGTAAATATATCAAGATTGATGTTTGTTTGAGATTTTAATGGTTGAAAGGGTAGCGTTTGCGTAACTGGTAAAGTTATTACCACGTAACTGTGACATGGATCAAGTTGCGTACAATAGACTCATGTAGTGTGGTCTTTTCGTGTATCAGACTGTTTCATGTTCTAGGACAGAGACAAGATTTTAACTTTATGGATTCTGAATAGAAAAATGTCATGATGTATAATGAATTTTCTGTCATTTGTTTCTAAGGTTCCTTGAATTTTGTGGATAGTGCTCTGGAATTTGTTGTACGGGTGACAGAATCAAGATTTCAACTTTATGAATTTTGTATTTTAGAACAATAATTACACTATCGTCAGTGTAGTTTAACCTATTATAACATGTTAGTTAACATTTTATTGAGTCGTAGGTAAATGTCATTATGTAAAATTACCGAGTCATGTGAACTCTTTAATAACACATTGATAAAATTTCTTGATTTCGCATCGAGGTACTTTTGCTTGTATTGTATTATTTGGTTTACGTACCAGAACTGATAACATTCGAGATTTGTGAATGTNTATTGTTCAGCATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGGTTAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAGGTACGCTGAATGAGTCCTATGTTGCTCAGACTAATCTAGAAATGTTGCCTGGTGTGTGTCCGATCCTCCAAAAGTAGTGCATTTTTAGAGACTCTGAGCAACATATACGTTGACCTATGTTACTCCGACTCTCCAAAAATACCTCTGGATATGTGTCGGATAATCCTCCAAAAGTAGTGCATTTTTGGAGGATCTAACACAGGTGCAACAACGTTTTTGGAGAGTCCAAGCAACATAGATGCTGATGGTGTAAAAATCTTGGATGTATTAACTAGTGATAGCATGTTGGTAATCATGTTTGTCTGATATTATTTGTCAGTACATAGAACTTGAAACTCGTAAAATATTGTATGAATTCTGAAAAAAGTTAATTGCTTTATCGGCTGATAACGTTGTGAATTTGATGAAGGTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAGGTACATTTCTTGACTAATCGATTTAATATTGCTATATTATAATGTCATTTAGTATAAAGTATCGTCGGTTTGCGTTGATTGTCAAAAGATGAAGATATTTTAAGGACTTTGTCTACAACTTAACTGGTTTCATTTCATTGGATGACAAAGCATGTTGTCTTTATACGTATATCAAATGTTGGATCGATGAGCTTGGATTACGACTTTGTGTCACCCATCGGTAATGTTGTTGCAGTGGTATTACATATAGCCAGGACATTTAATTTGACTTAGGCGAATAAAATAATTCCGGAAAACCAATTAAGCTCTTACAAGTTACGAAAAGAAGAAGAATATAACTAAGACGGCAATGTGAGTTTTCTTTTCTAAGTATTAAATAAAGAAGTCAAGGAAGAGATGTTATGAATTGACAGGATGTAACCACTGTCCTATAGAGAATATGGTTAGGGAATATTACTATACTTATTTGTGTGGTTATAATCATTAGATATAGAATCGTATCATTTTTTTCGGAACAAACTAGAAAGGAAAGTAAAGACATCACCTATAAAGACGCCCCCTCAAGACAAGTGTTTTTTGTTTGTCTATTAAAAGTAAGGCAACATAAACCGATTTCAAGTCAGACCGGTTGTGAGAACATTTTTTCCCCTGAATCTGTATTAGTCCAAAGATAAATCGAAAAAAAAATAGATGAAAATGTAGAAACTCATAACATCAGCCTATAACCACTCATTGTCTCATATTATTTGTAAACTTTCCATTATCAGTAGCAAAATACAGATAGGAACTCACATTTTATACTTAAAATGTTGATATTAAGTTTATCGGTAATATACTGATTATTATAACCTAAACGTCCGTGGAGTACAGATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTTCAACTATCCGGTCAATCTTGCCGTCTCCAAGATTGCTCCTGCACTGATTGCTGGAAACTCTTTAGTCCTCAAGCCTCCAACTCAGGTTACTTCACTAGAATTCGATCTCAAATTAGCTATATTATAATGCATCAAATTCTTACTATCGATTTATCAATAATATTCTATATGATGACGACACATCTCCTTTACCTTTTTTGTTACGACGTTCTTTACCATTAACCACCTTCTCAATTAGTTAAATTTTGTCCCTTGCAAAACTTCAAACATATTTTCAAGTAATTCACGTTTAAACACAACTTCAATTTCCAAATACCTGTTTTCAATTTAACTTCAGATGCTATGTTTTTTTCCCCAAGTATTACCAAATTCATGTTCAAACGTCTACTTACTTCGAGTGATCATTCACACCAGGGTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCTAAAGGCCTTATC</genome_strand>
        <mrna_strand>TAAAAAAAATAAAATTGTTTACATAGGTAAAAATGGCTGGAAATGGAGTATTTGCTGAAATAATTGATGGAGAAGTGTTCAGATATTATTGTGAAGGTGAATGGAAAAAATCAACTTCTGGAAAATCTGTTGCTATTGTTAATCCTACTACAAGAAAGACACAGTACAAAGTTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAGACATGGGCTAAAACACCATTGTGGAAAAGAGCAGAGTTACTTCATAAAGCAGCTGCAATCTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTCATTAAAGAAATTGCAAAACCAGCGAAAGATGCTGTCACCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGAGGTCCGGAGATTTAGTTTCGTACACTGCTGAAGAAGGAGTTAGAATTCTCGGTGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGCCTGACTTCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCGCTGGGTGTTATTCTAGCCATTCCTCCTTTCAACTATCCGGTCAATCTTGCCGTCTCCAAGATTGCTCCTGCACTGATTGCTGGAAACGCTTTAGTTCTCAAGCCGCCAACTCAN.........................................................................................................................................................................................................................................................................................................................................GGTGCTGTGGCTTGCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCGAAAGGCCTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-prOSgU/sgn_marker_seqs" ref_id="SGN-M9111" ref_strand="+" ref_description="SGN-M9111 C2_At5g58020 [cosii_markers]">
      <seq>gagctcttcgatttctcttcaattcaggtattcttttttaaatttctcttcgatttcaattcataaaccctaataatggaaccccaaatgcgcaatttcccagtttttatacaatcgccagagcttcagatccctactcatgtcctaaatattgaaaaccctaatcctaatttcactttgcaagacctcaaatcatgtttgcttgaaaaaacccagaaatcattggctgcaattaaggattctgtctatcttacttttgatggtcgacccattaaggattcaactctattatatggttctgggattagcccgttttccactttggtactacgtttccgccttcgtggtggtggtggtgatggaggtgccacgggagcggagtcccgagactgttatctcaagatgtatgctgttaagaaaccggataaaattgatccaaatgagattaggttgtctagatggttgaattgtgcgttgtcgaacgagtcattaaagcatcctgttgttattgataagcttgggaatttgttcaataaggagacgttagttgaggctttattgaagaaaaggctgcctaagcagtttgggtatataaagggattgaaagatatgattccggttgagctatcggtgattccgggcaaagaggatagagggcttggtgatggtgaagggactgggtttcagtgcccggtaacagggttggagttcaatgggaagtacaagttctttgctttgaggggttgtgggcatgttttgagtgcaaaagctttgaaggaggtgaaatcctcggcttgtttggtttgccacaaggaggttgtggagagtgacaaaattgtgatcaacgggagtgaagaagaggttgcggctttgagggagagaatggaggaagaaagggtgaaattgaaggatagtaagaaggtgaagaaggggaggaatgtggatgtagctgtgaatggtgaagaggtcattggggcatcacgcttgagcggaatgaaacatgggattgaggataagctggtaggcaaggatgcaaggaaagtggaagggaatggtaaaattggcattaaaagtaagattgaagttaaggatgtgaagaatagttcgagcaacgggtctgggaagaggtttaaggctgttgatgtagctccagctcatgctacaaaggaagtctatgcctccattttcacttcatcaagaaagtctgacttcaaggagacttattcttgcagatctttgccccttggaagaaactgatagctgtttttgtcgaggtgatctgctagtgtcttggactggttttattgtcttaaaatgttgtttcacgatagatagttacatgctagaccactgagtcgtagatgttgcctcttgccatttgattcagtcggtactttatatgtataacatacattgttattgtacatttgatgttgcttttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0002D20-Ljrqp/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="71917" stop="73961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72217" g_stop="73661" g_length="1445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1445" r_length="1445" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1446" polyA_stop="1459"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-M9111" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1445</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M9111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72217" e_stop="73661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTCTTCGATTTCTCTTCAATTCAGGTATTCTTTTTTAAATTTCTCTTCGATTTCAATTCATAAACCCTAATAATGGAACCCCAAATGCGCAATTTCCCAGTTTTTATACAATCGCCAGAGCTTCAGATCCCTACTCATGTCCTAAATATTGAAAACCCTAATCCTAATTTCACTTTGCAAGACCTCAAATCATGTTTGCTTGAAAAAACCCAGAAATCATTGGCTGCAATTAAGGATTCTGTCTATCTTACTTTTGATGGTCGACCCATTAAGGATTCAACTCTATTATATGGTTCTGGGATTAGCCCGTTTTCCACTTTGGTACTACGTTTCCGCCTTCGTGGTGGTGGTGGTGATGGAGGTGCCACGGGAGCGGAGTCCCGAGACTGTTATCTCAAGATGTATGCTGTTAAGAAACCGGATAAAATTGATCCAAATGAGATTAGGTTGTCTAGATGGTTGAATTGTGCGTTGTCGAACGAGTCATTAAAGCATCCTGTTGTTATTGATAAGCTTGGGAATTTGTTCAATAAGGAGACGTTAGTTGAGGCTTTATTGAAGAAAAGGCTGCCTAAGCAGTTTGGGTATATAAAGGGATTGAAAGATATGATTCCGGTTGAGCTATCGGTGATTCCGGGCAAAGAGGATAGAGGGCTTGGTGATGGTGAAGGGACTGGGTTTCAGTGCCCGGTAACAGGGTTGGAGTTCAATGGGAAGTACAAGTTCTTTGCTTTGAGGGGTTGTGGGCATGTTTTGAGTGCAAAAGCTTTGAAGGAGGTGAAATCCTCGGCTTGTTTGGTTTGCCACAAGGAGGTTGTGGAGAGTGACAAAATTGTGATCAACGGGAGTGAAGAAGAGGTTGCGGCTTTGAGGGAGAGAATGGAGGAAGAAAGGGTGAAATTGAAGGATAGTAAGAAGGTGAAGAAGGGGAGGAATGTGGATGTAGCTGTGAATGGTGAAGAGGTCATTGGGGCATCACGCTTGAGCGGAATGAAACATGGGATTGAGGATAAGCTGGTAGGCAAGGATGCAAGGAAAGTGGAAGGGAATGGTAAAATTGGCATTAAAAGTAAGATTGAAGTTAAGGATGTGAAGAATAGTTCGAGCAACGGGTCTGGGAAGAGGTTTAAGGCTGTTGATGTAGCTCCAGCTCATGCTACAAAGGAAGTCTATGCCTCCATTTTCACTTCATCAAGAAAGTCTGACTTCAAGGAGACTTATTCTTGCAGATCTTTGCCCCTTGGAAGAAACTGATAGCTGTTTTTGTCGAGGTGATCTGCTAGTGTCTTGGACTGGTTTTATTGTCTTAAAATGTTGTTTCACGATAGATAGTTACATGCTAGACCACTGAGTCGTAGATGTTGCCTCTTGCCATTTGATTCAGTCGGTACTTTATATGTATAACATACATTGTTATTGTACATTTGATGTTGCTTTTCAGA</genome_strand>
        <mrna_strand>GAGCTCTTCGATTTCTCTTCAATTCAGGTATTCTTTTTTAAATTTCTCTTCGATTTCAATTCATAAACCCTAATAATGGAACCCCAAATGCGCAATTTCCCAGTTTTTATACAATCGCCAGAGCTTCAGATCCCTACTCATGTCCTAAATATTGAAAACCCTAATCCTAATTTCACTTTGCAAGACCTCAAATCATGTTTGCTTGAAAAAACCCAGAAATCATTGGCTGCAATTAAGGATTCTGTCTATCTTACTTTTGATGGTCGACCCATTAAGGATTCAACTCTATTATATGGTTCTGGGATTAGCCCGTTTTCCACTTTGGTACTACGTTTCCGCCTTCGTGGTGGTGGTGGTGATGGAGGTGCCACGGGAGCGGAGTCCCGAGACTGTTATCTCAAGATGTATGCTGTTAAGAAACCGGATAAAATTGATCCAAATGAGATTAGGTTGTCTAGATGGTTGAATTGTGCGTTGTCGAACGAGTCATTAAAGCATCCTGTTGTTATTGATAAGCTTGGGAATTTGTTCAATAAGGAGACGTTAGTTGAGGCTTTATTGAAGAAAAGGCTGCCTAAGCAGTTTGGGTATATAAAGGGATTGAAAGATATGATTCCGGTTGAGCTATCGGTGATTCCGGGCAAAGAGGATAGAGGGCTTGGTGATGGTGAAGGGACTGGGTTTCAGTGCCCGGTAACAGGGTTGGAGTTCAATGGGAAGTACAAGTTCTTTGCTTTGAGGGGTTGTGGGCATGTTTTGAGTGCAAAAGCTTTGAAGGAGGTGAAATCCTCGGCTTGTTTGGTTTGCCACAAGGAGGTTGTGGAGAGTGACAAAATTGTGATCAACGGGAGTGAAGAAGAGGTTGCGGCTTTGAGGGAGAGAATGGAGGAAGAAAGGGTGAAATTGAAGGATAGTAAGAAGGTGAAGAAGGGGAGGAATGTGGATGTAGCTGTGAATGGTGAAGAGGTCATTGGGGCATCACGCTTGAGCGGAATGAAACATGGGATTGAGGATAAGCTGGTAGGCAAGGATGCAAGGAAAGTGGAAGGGAATGGTAAAATTGGCATTAAAAGTAAGATTGAAGTTAAGGATGTGAAGAATAGTTCGAGCAACGGGTCTGGGAAGAGGTTTAAGGCTGTTGATGTAGCTCCAGCTCATGCTACAAAGGAAGTCTATGCCTCCATTTTCACTTCATCAAGAAAGTCTGACTTCAAGGAGACTTATTCTTGCAGATCTTTGCCCCTTGGAAGAAACTGATAGCTGTTTTTGTCGAGGTGATCTGCTAGTGTCTTGGACTGGTTTTATTGTCTTAAAATGTTGTTTCACGATAGATAGTTACATGCTAGACCACTGAGTCGTAGATGTTGCCTCTTGCCATTTGATTCAGTCGGTACTTTATATGTATAACATACATTGTTATTGTACATTTGATGTTGCTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-prOSgU/sgn_marker_seqs" ref_id="SGN-M9111-2" ref_strand="+" ref_description="SGN-M9111-2 C2_At5g58020-2 [cosii_markers]">
      <seq>cccggctgcagaatcggcacgaggcttcgattcctcttcaattcaggtaatttttcttaaattctcttcaatttcaattcataaaccctaataatggaaccccaaacccgcaatttcccagttttcatacaatcaccagagcttcagatccccacccatgtcctaaatctcgaaaaccctaatcctaatttcactttgcaagacctcaaatcatgtttttttgataaaacccagaaatcattagctgcaattaaggattctgtctattttacctttgatggtcgacccattaaggattcaactctattgtgtggttctgggattagcccgttttccactttggtcctacgttttcgccttcgtggtggaggtggtgatggaggtgccacgggagcggagtcgcgagactgttatcttaagatgtatgctgttaagaaaccggataaaattgacccaaatgagattaggttgtctagatggttgaattgtgctttgtcgaacgagtcgttaaagcatccggttgttattgataaacttgggaatttgttcaataaggaggctttagttgaggctttattgaagaaaagggtgcctaagcagtttgggtatataaagggattgaaagatatgattctggttgagctgtcagtgattccggggaaagaggatagagggcttggtgatggtgaagggactggatttcagtgcccggtaacagggttggagttcaatgggaagtacaagttctttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0002D20-Ljrqp/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="71922" stop="73252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72222" g_stop="72952" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="754" r_length="730" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-M9111-2" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M9111-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72222" e_stop="72952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGATTTCTCTTCAATTCAGGTATTCTTTTTTAAATTTCTCTTCGATTTCAATTCATAAACCCTAATAATGGAACCCCAAATGCGCAATTTCCCAGTTTTTATACAATCGCCAGAGCTTCAGATCCCTACTCATGTCCTAAATATTGAAAACCCTAATCCTAATTTCACTTTGCAAGACCTCAAATCATGTTTGCTTGAAAAAACCCAGAAATCATTGGCTGCAATTAAGGATTCTGTCTATCTTACTTTTGATGGTCGACCCATTAAGGATTCAACTCTATTATATGGTTCTGGGATTAGCCCGTTTTCCACTTTGGTACTACGTTTCCGCCTTCGTGGTGGTGGTGGTGATGGAGGTGCCACGGGAGCGGAGTCCCGAGACTGTTATCTCAAGATGTATGCTGTTAAGAAACCGGATAAAATTGATCCAAATGAGATTAGGTTGTCTAGATGGTTGAATTGTGCGTTGTCGAACGAGTCATTAAAGCATCCTGTTGTTATTGATAAGCTTGGGAATTTGTTCAATAAGGAGACGTTAGTTGAGGCTTTATTGAAGAAAAGGCTGCCTAAGCAGTTTGGGTATATAAAGGGATTGAAAGATATGATTCCGGTTGAGCTATCGGTGATTCCGGGCAAAGAGGATAGAGGGCTTGGTGATGGTGAAGGGACTGGGTTTCAGTGCCCGGTAACAGGGTTGGAGTTCAATGGGAAGTACAAGTTCTTTGCTT</genome_strand>
        <mrna_strand>CTTCGATTCCTCTTCAATTCAGGTAATTTTTCTTAAAT-TCTCTTCAATTTCAATTCATAAACCCTAATAATGGAACCCCAAACCCGCAATTTCCCAGTTTTCATACAATCACCAGAGCTTCAGATCCCCACCCATGTCCTAAATCTCGAAAACCCTAATCCTAATTTCACTTTGCAAGACCTCAAATCATGTTTTTTTGATAAAACCCAGAAATCATTAGCTGCAATTAAGGATTCTGTCTATTTTACCTTTGATGGTCGACCCATTAAGGATTCAACTCTATTGTGTGGTTCTGGGATTAGCCCGTTTTCCACTTTGGTCCTACGTTTTCGCCTTCGTGGTGGAGGTGGTGATGGAGGTGCCACGGGAGCGGAGTCGCGAGACTGTTATCTTAAGATGTATGCTGTTAAGAAACCGGATAAAATTGACCCAAATGAGATTAGGTTGTCTAGATGGTTGAATTGTGCTTTGTCGAACGAGTCGTTAAAGCATCCGGTTGTTATTGATAAACTTGGGAATTTGTTCAATAAGGAGGCTTTAGTTGAGGCTTTATTGAAGAAAAGGGTGCCTAAGCAGTTTGGGTATATAAAGGGATTGAAAGATATGATTCTGGTTGAGCTGTCAGTGATTCCGGGGAAAGAGGATAGAGGGCTTGGTGATGGTGAAGGGACTGGATTTCAGTGCCCGGTAACAGGGTTGGAGTTCAATGGGAAGTACAAGTTCTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-prOSgU/sgn_marker_seqs" ref_id="SGN-M604-R" ref_strand="+" ref_description="SGN-M604-R TG418-R [rflp_markers_reverse]">
      <seq>ccatggggggtgcattgtctccttcgcctcgattatacttatctgagccttaatgaagtccaatttgctttgcagtacctttttcctcagtcaatactagctctgtttgcagcaagtaagcatcattacttatgtttctgcttatctgtaggctgtgatgatatagagcttattgagttaatcgggttttgctcagctcaaacccaaatcttggtaaggataactaaactgtgttttaaatggtgcaacgactattgggacgtgattgagtggaagagatattaggaattcatttagcttatccaactagattgttgttgtatgctattctggtttgcagctatggaggtatccctttcattttcccgatttcgtgacatatctgagcctagttgattactcaactgagaataattcgtcgagagtagaacactggagaatatgaattaggcagcattgtgatgggcagtttttagcaatatatgaatgttaatagttttatgttatcatggaaatggtggcattcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0002D20-Ljrqp/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="94779" stop="95907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95079" g_stop="95607" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-M604-R" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M604-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95079" e_stop="95607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGGGGGTGCATTGTCTCCTTCGCCTCGATTATACTTATCTGAGCCTTAATGAAGTCCAATTTGCTTTGCAGTACCTTTTTCCTCAGTCAATACTAGCTCTGTTTGCAGCAAGTAAGCATCATTACTTATGTTTCTGCTTATCTGTAGGCTGTGATGATATAGAGCTTATTGAGTTAATCGGGTTTTGCTCAGCTCAAACCCAAATCTTGGTAAGGATAACTAAACTGTGTTTTAAATGGTGCAACGACTATTGGGACGTGATTGAGTGGAAGAGATATTAGGAATTCATTTAGCTTATCCAACTAGATTGTTGTTGTATGCTATTCTGGTTTGCAGCTATGGCGGTATCCCTTTCATTTTCCCGATTTCGTGACATATCTGAGCCTAGTTGATTACTCAACTGAGAATAATTCGTCGAGAGTAGAACACTGGAGAATATGAATTAGGCAGCATTGTGATGGGCAGTTTTTAGCAATATATGAATGTTAATAGTTTTATGTTATCATGGAAATGGTGGCATTCGTT</genome_strand>
        <mrna_strand>CCATGGGGGGTGCATTGTCTCCTTCGCCTCGATTATACTTATCTGAGCCTTAATGAAGTCCAATTTGCTTTGCAGTACCTTTTTCCTCAGTCAATACTAGCTCTGTTTGCAGCAAGTAAGCATCATTACTTATGTTTCTGCTTATCTGTAGGCTGTGATGATATAGAGCTTATTGAGTTAATCGGGTTTTGCTCAGCTCAAACCCAAATCTTGGTAAGGATAACTAAACTGTGTTTTAAATGGTGCAACGACTATTGGGACGTGATTGAGTGGAAGAGATATTAGGAATTCATTTAGCTTATCCAACTAGATTGTTGTTGTATGCTATTCTGGTTTGCAGCTATGGAGGTATCCCTTTCATTTTCCCGATTTCGTGACATATCTGAGCCTAGTTGATTACTCAACTGAGAATAATTCGTCGAGAGTAGAACACTGGAGAATATGAATTAGGCAGCATTGTGATGGGCAGTTTTTAGCAATATATGAATGTTAATAGTTTTATGTTATCATGGAAATGGTGGCATTCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-prOSgU/sgn_marker_seqs" ref_id="SGN-M604-F" ref_strand="+" ref_description="SGN-M604-F TG418-F [rflp_markers_forward]">
      <seq>acctcagttagcaaaacaatggctccaatatgcctgacccaactctagaaaacttcatttgtcatcattacagcctgaacaaggagtagtagtatagtgcgcctaaattcagttaatatggagtataattttagctaaacaccacacaatttaagccaatccaaacaaaccatcagctgaagaacagcgagagggcaaccaccattaataactccccaatgcctctctcgtcgtccagagtttcattaacacaaactttgatttagtacatgtagtatcttcctgttacatttctacttagtcacatttctattttaaaagtatacctaataagtttgataatgcatattttcactcttagaattcatagttagcaaatagatatagcaattgttcggagctcattaataatcatcaggtgttgtaactgagagcgtgtttgtctttcttttgttcatagcttgatatgctgaacagtaaacagatatcttttataatgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0002D20-Ljrqp/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="96755" stop="95654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96455" g_stop="95954" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-M604-F" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M604-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96455" e_stop="95954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCAGTTAGCAAAACAATGGCTCCAATATGCCTGACCCAACTCTAGAAAACTTCATTTGTCATCATTACAGCCTGAACAAGGAGTAGTAGTATAGTGCGCCTAAATTCAGTTAATATGGAGTATAATTTTAGCTAAACACCACACAATTTAAGCCAATCCAAACAAACCATCAGCTGAAGAACAGCGAGAGGGCAACCACCATTAATAACTCCCCAATGCCTCTCTCGTCGTCCAGAGTTTCATTAACACAAACTTTGATTTAGTACATGTAGTATCTTCCTGTTACATTTCTACTTAGTCACATTTCTATTTTAAAAGTATACCTAATAAGTTTGATAATGCATATTTTCACTCTTAGAATTCATAGTTAGCAAATAGATATAGCAATTGTTCGGAGCTCATTAATAATCATCAGGTGTTGTAACTGAGAGCGTGTTTGTCTTTCTTTTGTTCATAGTTTGATATTCTGAACAGTAAACAGATATCTTTTATAATGAGG</genome_strand>
        <mrna_strand>ACCTCAGTTAGCAAAACAATGGCTCCAATATGCCTGACCCAACTCTAGAAAACTTCATTTGTCATCATTACAGCCTGAACAAGGAGTAGTAGTATAGTGCGCCTAAATTCAGTTAATATGGAGTATAATTTTAGCTAAACACCACACAATTTAAGCCAATCCAAACAAACCATCAGCTGAAGAACAGCGAGAGGGCAACCACCATTAATAACTCCCCAATGCCTCTCTCGTCGTCCAGAGTTTCATTAACACAAACTTTGATTTAGTACATGTAGTATCTTCCTGTTACATTTCTACTTAGTCACATTTCTATTTTAAAAGTATACCTAATAAGTTTGATAATGCATATTTTCACTCTTAGAATTCATAGTTAGCAAATAGATATAGCAATTGTTCGGAGCTCATTAATAATCATCAGGTGTTGTAACTGAGAGCGTGTTTGTCTTTCTTTTGTTCATAGCTTGATATGCTGAACAGTAAACAGATATCTTTTATAATGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-prOSgU/sgn_marker_seqs" ref_id="SGN-M210-R" ref_strand="+" ref_description="SGN-M210-R TG272-R [rflp_markers_reverse]">
      <seq>acctcagttagcaaaacaatggctccaatatgcctgacccaactctagaaaacttcatttgtcatcattacagcctgaacaaggagtagtagtatagtgcgcctaaattcagttaatatggagtataattttagctaaacaccacacaatttaagccaatccaaacaaaccatcagctgaagaacagcgagagggcaaccaccattaataactccccaatgcctctctcgtcgtccagagtttcattaacacaaactttgatttagtacatgtagtatcttcctgttacatttctacttagtcacatttctattttaaaagtatacctaataagtttgataatgcatattttcactcttagaattcatagttagcaaatagatatagcaattgttcggagctcattaataatcatcaggtgttgtaactgagagcgtgtttgtctttcttttgttcatagtttgatattctgaacagtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0002D20-Ljrqp/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="96755" stop="95675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96455" g_stop="95975" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-M210-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M210-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96455" e_stop="95975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCAGTTAGCAAAACAATGGCTCCAATATGCCTGACCCAACTCTAGAAAACTTCATTTGTCATCATTACAGCCTGAACAAGGAGTAGTAGTATAGTGCGCCTAAATTCAGTTAATATGGAGTATAATTTTAGCTAAACACCACACAATTTAAGCCAATCCAAACAAACCATCAGCTGAAGAACAGCGAGAGGGCAACCACCATTAATAACTCCCCAATGCCTCTCTCGTCGTCCAGAGTTTCATTAACACAAACTTTGATTTAGTACATGTAGTATCTTCCTGTTACATTTCTACTTAGTCACATTTCTATTTTAAAAGTATACCTAATAAGTTTGATAATGCATATTTTCACTCTTAGAATTCATAGTTAGCAAATAGATATAGCAATTGTTCGGAGCTCATTAATAATCATCAGGTGTTGTAACTGAGAGCGTGTTTGTCTTTCTTTTGTTCATAGTTTGATATTCTGAACAGTAAA</genome_strand>
        <mrna_strand>ACCTCAGTTAGCAAAACAATGGCTCCAATATGCCTGACCCAACTCTAGAAAACTTCATTTGTCATCATTACAGCCTGAACAAGGAGTAGTAGTATAGTGCGCCTAAATTCAGTTAATATGGAGTATAATTTTAGCTAAACACCACACAATTTAAGCCAATCCAAACAAACCATCAGCTGAAGAACAGCGAGAGGGCAACCACCATTAATAACTCCCCAATGCCTCTCTCGTCGTCCAGAGTTTCATTAACACAAACTTTGATTTAGTACATGTAGTATCTTCCTGTTACATTTCTACTTAGTCACATTTCTATTTTAAAAGTATACCTAATAAGTTTGATAATGCATATTTTCACTCTTAGAATTCATAGTTAGCAAATAGATATAGCAATTGTTCGGAGCTCATTAATAATCATCAGGTGTTGTAACTGAGAGCGTGTTTGTCTTTCTTTTGTTCATAGTTTGATATTCTGAACAGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-prOSgU/sgn_marker_seqs" ref_id="SGN-M141-F" ref_strand="+" ref_description="SGN-M141-F TG13-F [rflp_markers_forward]">
      <seq>aatccatggaagagtgaacttcatctgaaagaggctgtgatgattattgtttatcggcatttacaaaaatggtctttttttgaggccactttaaattccgtgctcatttccttttgggcatagagacatcctgacctgtatcttggcttggcaaacaccaacaagggctgtgattttaggcttctctttcacaatccaattggttattttgcatccatggcatggttgccttatctttaccccaatagaaaattgagactgagcctcattttccaaatttccttccttacaacctgggaatagaacacgagaccttctttgacggagagagatcaataacaccctctttatgcgaccgttgatagttttcaatggtaatttactctggaattggtattctttagttttatgtgttaagaatgacgtgataaccaactacaccaccacaaaggattctcgatgtggatgaccatctttaacatgccaatgatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0002D20-Ljrqp/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="111126" stop="112221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111426" g_stop="111921" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-M141-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M141-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111426" e_stop="111921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCATGGAAGAGTGAACTTCATCTGAAAGAGGCTGTGATGATTATTGTTTATCGGCATTTACAAAAATGGTCTTTTTTTGAGGCCACTTTAAATTCCGTGCTCATTTCCTTTTGGGCATAGAGACATCCTGACCTGTATCTTGGCTTGGCAAACACCAACAAGGGCTGTGATTTTAGGCTTCTCTTTCACAATCCAATTGGTTATTTTGCATCCATGGCATGGTTGCCTTATCTTTACCCCAATAGAAAATTGAGACTGAGCCTCATTTTCCAAATTTCCTTCCTTACAACCTGGGAATAGAACACGAGACCTTCTTTGACGGAGAGAGATCAATAACACCCTCTTTATGCGACCGTTGATAGTTTTCAATGGTAATTTACTCTGGAATTGGTATTCTTTAGTTTTATGTGTTAAGAATGACGTGATAACCAACTACACCACCACAAAGGATTCTCGATGTGGATGACCATCTTTAACATGCCAATGATTTTTT</genome_strand>
        <mrna_strand>AATCCATGGAAGAGTGAACTTCATCTGAAAGAGGCTGTGATGATTATTGTTTATCGGCATTTACAAAAATGGTCTTTTTTTGAGGCCACTTTAAATTCCGTGCTCATTTCCTTTTGGGCATAGAGACATCCTGACCTGTATCTTGGCTTGGCAAACACCAACAAGGGCTGTGATTTTAGGCTTCTCTTTCACAATCCAATTGGTTATTTTGCATCCATGGCATGGTTGCCTTATCTTTACCCCAATAGAAAATTGAGACTGAGCCTCATTTTCCAAATTTCCTTCCTTACAACCTGGGAATAGAACACGAGACCTTCTTTGACGGAGAGAGATCAATAACACCCTCTTTATGCGACCGTTGATAGTTTTCAATGGTAATTTACTCTGGAATTGGTATTCTTTAGTTTTATGTGTTAAGAATGACGTGATAACCAACTACACCACCACAAAGGATTCTCGATGTGGATGACCATCTTTAACATGCCAATGATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-prOSgU/sgn_marker_seqs" ref_id="SGN-M141-R" ref_strand="+" ref_description="SGN-M141-R TG13-R [rflp_markers_reverse]">
      <seq>agagccgaaatttcaacacacgcaataggttttccaaccagggaatagactcaccatggaagatcatgaaatgggttattcagggctcagatttgttgtatttcttaacaaagaaaagagaagaacgccacagccatggatgcagacaccagtttgctattcaaagccataaccgggtcgcccagctaagatgcaggtttttctcaatgctatattgaacacagcttcatagcccaaaaaggaaagtaagcaatcatcatagccccctttacaacaccagcagcagcaacagcatcacaagaagacgagaggaagaacaacaagagtacagaggtgtgtttggatgacatttttttcccttttgtttatttaaaagggctgttattttttggttatcaatggaaaaatcactggcaaagcagagacgggcaaccacccttttacagaaaatcccaatttctctgatgcttcattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0002D20-Ljrqp/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="113668" stop="112592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113368" g_stop="112892" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-M141-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M141-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113368" e_stop="112892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCCGAAATTTCAACACACGCAATAGGTTTTCCAACCAGGGAATAGACTCACCATGGAAGATCATGAAATGGGTTATTCAGGGCTCAGATTTGTTGTATTTCTTAACAAAGAAAAGAGAAGAACGCCACAGCCATGGATGCAGACACCAGTTTGCTATTCAAAGCCATAACCGGGTCGCCCAGCTAAGATGCAGGTTTTTCTCAATGCTATATTGAACACAGCTTCATAGCCCAAAAAGGAAAGTAAGCAATCATCATAGCCCCCTTTACAACACCAGCAGCAGCAACAGCATCACAAGAAGACGAGAGGAAGAACAACAAGAGTACAGAGGTGTGTTTGGATGACATTTTTTTCCCTTTTGTTTATTTAAAAGGGCTGTTATTTTTTGGTTATCAATGGAAAAATCACTGGCAAAGCAGAGACGGGCAACCACCCTTTTACAGAAAATCCCAATTTCTCTGATGCTTCATTCTT</genome_strand>
        <mrna_strand>AGAGCCGAAATTTCAACACACGCAATAGGTTTTCCAACCAGGGAATAGACTCACCATGGAAGATCATGAAATGGGTTATTCAGGGCTCAGATTTGTTGTATTTCTTAACAAAGAAAAGAGAAGAACGCCACAGCCATGGATGCAGACACCAGTTTGCTATTCAAAGCCATAACCGGGTCGCCCAGCTAAGATGCAGGTTTTTCTCAATGCTATATTGAACACAGCTTCATAGCCCAAAAAGGAAAGTAAGCAATCATCATAGCCCCCTTTACAACACCAGCAGCAGCAACAGCATCACAAGAAGACGAGAGGAAGAACAACAAGAGTACAGAGGTGTGTTTGGATGACATTTTTTTCCCTTTTGTTTATTTAAAAGGGCTGTTATTTTTTGGTTATCAATGGAAAAATCACTGGCAAAGCAGAGACGGGCAACCACCCTTTTACAGAAAATCCCAATTTCTCTGATGCTTCATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>10</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="21583" PGL_stop="16345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21298" e_stop="21122"/>
            <exon e_start="20494" e_stop="20301"/>
            <exon e_start="19891" e_stop="19763"/>
            <exon e_start="18892" e_stop="18773"/>
            <exon e_start="18443" e_stop="18307"/>
            <exon e_start="17972" e_stop="17817"/>
            <exon e_start="17505" e_stop="17127"/>
            <exon e_start="16817" e_stop="16701"/>
            <exon e_start="16603" e_stop="16393"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.966" e_score="0.961"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="0.985"/>
          <exon-intron don_prob="0.999" acc_prob="0.843" e_score="0.977"/>
          <exon-intron don_prob="0.993" acc_prob="0.830" e_score="0.975"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.978" e_score="0.994"/>
          <exon-intron don_prob="0.997" acc_prob="0.935" e_score="0.971"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.983"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="21298" e_stop="21122" e_length="177"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.966">
            <gDNA_intron_boundary i_start="21121" i_stop="20495" i_length="627"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="20494" e_stop="20301" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20300" i_stop="19892" i_length="409"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="19891" e_stop="19763" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.843">
            <gDNA_intron_boundary i_start="19762" i_stop="18893" i_length="870"/>
          </intron>
          <exon e_serial="4" e_score="0.975">
            <gDNA_exon_boundary e_start="18892" e_stop="18773" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.830">
            <gDNA_intron_boundary i_start="18772" i_stop="18444" i_length="329"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18443" e_stop="18307" e_length="137"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="18306" i_stop="17973" i_length="334"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="17972" e_stop="17817" e_length="156"/>
          </exon>
          <intron i_serial="6" don_prob="0.848" acc_prob="0.978">
            <gDNA_intron_boundary i_start="17816" i_stop="17506" i_length="311"/>
          </intron>
          <exon e_serial="7" e_score="0.971">
            <gDNA_exon_boundary e_start="17505" e_stop="17127" e_length="379"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.935">
            <gDNA_intron_boundary i_start="17126" i_stop="16818" i_length="309"/>
          </intron>
          <exon e_serial="8" e_score="0.983">
            <gDNA_exon_boundary e_start="16817" e_stop="16701" e_length="117"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16700" i_stop="16604" i_length="97"/>
          </intron>
          <exon e_serial="9" e_score="0.929">
            <gDNA_exon_boundary e_start="16603" e_stop="16393" e_length="211"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21298" stop="21122"/>
              <exon start="20494" stop="20301"/>
              <exon start="19891" stop="19763"/>
              <exon start="18892" stop="18773"/>
              <exon start="18443" stop="18307"/>
              <exon start="17972" stop="17817"/>
              <exon start="17505" stop="17127"/>
              <exon start="16817" stop="16701"/>
              <exon start="16603" stop="16393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4716-3" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21298" stop="21122"/>
              <exon start="20494" stop="20301"/>
              <exon start="19891" stop="19763"/>
              <exon start="18892" stop="18773"/>
              <exon start="18443" stop="18378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAG : CATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGGTTAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAG : GTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAG : ATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTTCAACTATCCGGTCAATCTTGCCGTCTCCAAGATTGCTCCTGCACTGATTGCTGGAAACTCTTTAGTCCTCAAGCCTCCAACTCAG : GGTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCTAAAGGCCTTATCAGTTGTGTGACCGGAAAAGGTTCTGAAATCGGAGATTTTCTCACTATGCATCCTGGAGTAAACTGTATAAG : CTTCACTGGTGGAGACACCGGTGTTGCAATCTCGAAGAAAGCAGGAATGGTCCCTCTACAGATGGAGCTGGGAGGAAAGGATGCTTGTATCGTGCTCGAGGATGCTGATTTAGATTTGGCTGCTGGAAACATTGTGAAAGGAGGATTTTCTTACAG : TGGTCAAAGATGCACAGCTGTTAAGGTCGTGTTGGTGATGGAATCTGTTGCTGACATTCTTGTTGAGAAGGTAAATGCCAAAGTGGCAAAGTTAACCGTTGGGCCACCTGAAGATAATTGTGATATCACTCCAGTTGTCTCCGAGTCATCCGCAAATTTCATCGAGGGGTTGGTCATGGACGCAAAGGAGAAAGATGCAACATTTTGCCAGCCATACAAGAGAGAAGGCAACCTTATCTGGCCCTTGTTGTTAGACAATGTTAGGCCGGACATGAGAATCGCTTGGGAAGAACCCTTTGGTCCAGTTTTGCCCGTTATTCGGATAAACTCAGTCGAAGAAGGAATTCACCACTGCAATGCTAGCAATTTCGGTCTGCAG : GGTTGTGTGTTCACCAAAGACATCAACAAAGCAATACTGATCAGTGATGCAATGGAAACCGGAACCGTTCAGATTAACTCAGCTCCTGCTCGTGGACCGGATCATTTTCCGTTCCAG : GGTATTAAGGACAGCGGAATTGGATCACAAGGGATCACTAACAGTATTAACATGATGACTAAAGTGAAGACCACTGTGATCAATTTGCCAACCCCTTCTTATACTATGGGGTAAATTAATCACTGTTTTTTGCTTTAGAAATTTGACAAAAATAATTAAGAATCCATGTTGTGGATGTTAATAAGCTCACACCAATTATTGTTCATTTCTT</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  G  K  N  Q  L  L  E  N  L  L  L  L  L  I  L  L  Q  E  R  H  N  T  K  F  K  :  H  V  H  K  K  R  *  T  K  *  W  K  *  Q  K  Q  H  K  N  H  G  L  K  H  H  Y  G  K  E  Q  S  Y  F  I  R  Q  L  Q  F  *  K  N  T  K  P  L  L  L  N  A  L  V  K  K  L  Q  N  Q  L  K  M  L  S  P  R :   L  *  D  L  V  I  W  F  L  T  L  L  K  K  E  L  E  F  *  G  R  V  S  S  W  Y  L  I  V  S  L  E  M  K  G  P  N  T  V  *  H  P  R :   Y  R  W  V  *  F  W  R  F  L  L  S  T  I  R  S  I  L  P  S  P  R  L  L  L  H  *  L  L  E  T  L  *  S  S  S  L  Q  L  R :   V  L  W  L  P  C  I  W  C  I  A  S  T  *  L  D  S  L  K  A  L  S  V  V  *  P  E  K  V  L  K  S  E  I  F  S  L  C  I  L  E  *  T  V  *   : A  S  L  V  E  T  P  V  L  Q  S  R  R  K  Q  E  W  S  L  Y  R  W  S  W  E  E  R  M  L  V  S  C  S  R  M  L  I  *  I  W  L  L  E  T  L  *  K  E  D  F  L  T   : V  V  K  D  A  Q  L  L  R  S  C  W  *  W  N  L  L  L  T  F  L  L  R  R  *  M  P  K  W  Q  S  *  P  L  G  H  L  K  I  I  V  I  S  L  Q  L  S  P  S  H  P  Q  I  S  S  R  G  W  S  W  T  Q  R  R  K  M  Q  H  F  A  S  H  T  R  E  K  A  T  L  S  G  P  C  C  *  T  M  L  G  R  T  *  E  S  L  G  K  N  P  L  V  Q  F  C  P  L  F  G  *  T  Q  S  K  K  E  F  T  T  A  M  L  A  I  S  V  C  R :   V  V  C  S  P  K  T  S  T  K  Q  Y  *  S  V  M  Q  W  K  P  E  P  F  R  L  T  Q  L  L  L  V  D  R  I  I  F  R  S  R :   V  L  R  T  A  E  L  D  H  K  G  S  L  T  V  L  T  *  *  L  K  *  R  P  L  *  S  I  C  Q  P  L  L  I  L  W  G  K  L  I  T  V  F  C  F  R  N  L  T  K  I  I  K  N  P  C  C  G  C  *  *  A  H  T  N  Y  C  S  F  L </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  E  K  I  S  F  W  K  I  C  C  Y  Y  *  S  Y  Y  K  K  D  T  I  Q  S  S  S :   M  Y  T  R  R  G  E  Q  S  N  G  N  S  K  S  S  T  K  I  M  G  *  N  T  T  M  E  K  S  R  V  T  S  *  G  S  C  N  F  E  R  T  Q  S  P  Y  C  *  M  P  W  L  R  N  C  K  T  S  *  R  C  C  H  R   : G  C  E  I  W  *  F  G  F  L  H  C  *  R  R  S  *  N  S  R  G  G  *  V  L  G  I  *  *  F  P  W  K  *  K  D  Q  I  L  S  N  I  Q   : D  T  V  G  C  D  S  G  D  S  S  F  Q  L  S  G  Q  S  C  R  L  Q  D  C  S  C  T  D  C  W  K  L  F  S  P  Q  A  S  N  S   : G  C  C  G  C  P  A  Y  G  A  L  L  P  L  S  W  I  P  *  R  P  Y  Q  L  C  D  R  K  R  F  *  N  R  R  F  S  H  Y  A  S  W  S  K  L  Y  K  :  L  H  W  W  R  H  R  C  C  N  L  E  E  S  R  N  G  P  S  T  D  G  A  G  R  K  G  C  L  Y  R  A  R  G  C  *  F  R  F  G  C  W  K  H  C  E  R  R  I  F  L  Q  :  W  S  K  M  H  S  C  *  G  R  V  G  D  G  I  C  C  *  H  S  C  *  E  G  K  C  Q  S  G  K  V  N  R  W  A  T  *  R  *  L  *  Y  H  S  S  C  L  R  V  I  R  K  F  H  R  G  V  G  H  G  R  K  G  E  R  C  N  I  L  P  A  I  Q  E  R  R  Q  P  Y  L  A  L  V  V  R  Q  C  *  A  G  H  E  N  R  L  G  R  T  L  W  S  S  F  A  R  Y  S  D  K  L  S  R  R  R  N  S  P  L  Q  C  *  Q  F  R  S  A   : G  L  C  V  H  Q  R  H  Q  Q  S  N  T  D  Q  *  C  N  G  N  R  N  R  S  D  *  L  S  S  C  S  W  T  G  S  F  S  V  P   : G  Y  *  G  Q  R  N  W  I  T  R  D  H  *  Q  Y  *  H  D  D  *  S  E  D  H  C  D  Q  F  A  N  P  F  L  Y  Y  G  V  N  *  S  L  F  F  A  L  E  I  *  Q  K  *  L  R  I  H  V  V  D  V  N  K  L  T  P  I  I  V  H  F   </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  W  K  K  S  A  S  G  K  S  V  A  I  I  N  P  T  T  R  K  T  Q  Y  K  V  Q   : A  C  T  Q  E  E  V  N  K  V  M  E  I  A  K  A  A  Q  K  S  W  A  K  T  P  L  W  K  R  A  E  L  L  H  K  A  A  A  I  L  K  E  H  K  A  P  I  A  E  C  L  G  *  E  I  A  K  P  A  K  D  A  V  T  E  :  V  V  R  S  G  D  L  V  S  Y  T  A  E  E  G  V  R  I  L  G  E  G  K  F  L  V  S  D  S  F  P  G  N  E  R  T  K  Y  C  L  T  S  K  :  I  P  L  G  V  I  L  A  I  P  P  F  N  Y  P  V  N  L  A  V  S  K  I  A  P  A  L  I  A  G  N  S  L  V  L  K  P  P  T  Q  :  G  A  V  A  A  L  H  M  V  H  C  F  H  L  A  G  F  P  K  G  L  I  S  C  V  T  G  K  G  S  E  I  G  D  F  L  T  M  H  P  G  V  N  C  I  S :   F  T  G  G  D  T  G  V  A  I  S  K  K  A  G  M  V  P  L  Q  M  E  L  G  G  K  D  A  C  I  V  L  E  D  A  D  L  D  L  A  A  G  N  I  V  K  G  G  F  S  Y  S :   G  Q  R  C  T  A  V  K  V  V  L  V  M  E  S  V  A  D  I  L  V  E  K  V  N  A  K  V  A  K  L  T  V  G  P  P  E  D  N  C  D  I  T  P  V  V  S  E  S  S  A  N  F  I  E  G  L  V  M  D  A  K  E  K  D  A  T  F  C  Q  P  Y  K  R  E  G  N  L  I  W  P  L  L  L  D  N  V  R  P  D  M  R  I  A  W  E  E  P  F  G  P  V  L  P  V  I  R  I  N  S  V  E  E  G  I  H  H  C  N  A  S  N  F  G  L  Q  :  G  C  V  F  T  K  D  I  N  K  A  I  L  I  S  D  A  M  E  T  G  T  V  Q  I  N  S  A  P  A  R  G  P  D  H  F  P  F  Q  :  G  I  K  D  S  G  I  G  S  Q  G  I  T  N  S  I  N  M  M  T  K  V  K  T  T  V  I  N  L  P  T  P  S  Y  T  M  G  *  I  N  H  C  F  L  L  *  K  F  D  K  N  N  *  E  S  M  L  W  M  L  I  S  S  H  Q  L  L  F  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20336" stop="20301"/>
                    <exon start="19891" stop="19763"/>
                    <exon start="18892" stop="18773"/>
                    <exon start="18443" stop="18307"/>
                    <exon start="17972" stop="17817"/>
                    <exon start="17505" stop="17127"/>
                    <exon start="16817" stop="16701"/>
                    <exon start="16603" stop="16490"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1185</number_coding_nucleotides>
                  <number_encoded_amino_acids>395</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIAKPAKDAVTEVVRSGDLVSYTAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGVAISKKAGMVPLQMELGGKDACIVLEDADLDLAAGNIVKGGFSYSGQRCTAVKVVLVMESVADILVEKVNAKVAKLTVGPPEDNCDITPVVSESSANFIEGLVMDAKEKDATFCQPYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDINKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKVKTTVINLPTPSYTMG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21296" stop="21122"/>
                    <exon start="20494" stop="20337"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFWKKSASGKSVAIINPTTRKTQYKVQACTQEEVNKVMEIAKAAQKSWAKTPLWKRAELLHKAAAILKEHKAPIAECLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="21583" e_stop="21530"/>
            <exon e_start="21411" e_stop="21300"/>
            <exon e_start="21210" e_stop="21122"/>
            <exon e_start="20494" e_stop="20301"/>
            <exon e_start="19891" e_stop="19763"/>
            <exon e_start="18892" e_stop="18773"/>
            <exon e_start="18443" e_stop="18307"/>
            <exon e_start="17972" e_stop="17817"/>
            <exon e_start="17505" e_stop="17127"/>
            <exon e_start="16817" e_stop="16701"/>
            <exon e_start="16603" e_stop="16345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.593"/>
          <exon-intron don_prob="0.782" acc_prob="0.000" e_score="0.545"/>
          <exon-intron don_prob="0.996" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="0.990"/>
          <exon-intron don_prob="0.999" acc_prob="0.843" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.830" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.593">
            <gDNA_exon_boundary e_start="21583" e_stop="21530" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21529" i_stop="21412" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="0.545">
            <gDNA_exon_boundary e_start="21411" e_stop="21300" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.782" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21299" i_stop="21211" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21210" e_stop="21122" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.966">
            <gDNA_intron_boundary i_start="21121" i_stop="20495" i_length="627"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="20494" e_stop="20301" e_length="194"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20300" i_stop="19892" i_length="409"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19891" e_stop="19763" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.843">
            <gDNA_intron_boundary i_start="19762" i_stop="18893" i_length="870"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18892" e_stop="18773" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.830">
            <gDNA_intron_boundary i_start="18772" i_stop="18444" i_length="329"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18443" e_stop="18307" e_length="137"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="18306" i_stop="17973" i_length="334"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="17972" e_stop="17817" e_length="156"/>
          </exon>
          <intron i_serial="8" don_prob="0.848" acc_prob="0.978">
            <gDNA_intron_boundary i_start="17816" i_stop="17506" i_length="311"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="17505" e_stop="17127" e_length="379"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.935">
            <gDNA_intron_boundary i_start="17126" i_stop="16818" i_length="309"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="16817" e_stop="16701" e_length="117"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16700" i_stop="16604" i_length="97"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="16603" e_stop="16345" e_length="259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21583" stop="21530"/>
              <exon start="21411" stop="21300"/>
              <exon start="21210" stop="21122"/>
              <exon start="20494" stop="20301"/>
              <exon start="19891" stop="19763"/>
              <exon start="18892" stop="18773"/>
              <exon start="18443" stop="18307"/>
              <exon start="17972" stop="17817"/>
              <exon start="17505" stop="17127"/>
              <exon start="16817" stop="16701"/>
              <exon start="16603" stop="16345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4716-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAACTAAATATCACCATCGATAAATCATAATGTATTTACAAGTTAAGTGTTGT : TATTTCCCTCTCTCTTTTATTTAGGTTGATCAATCAACTCTAATGGCTTTTACAAAGCCTTTATTGGCAAAATCATTCAAAAAAAAGTCAAGGCTACAAGTGCAAAACACTA : NNNNNNNNNNNNNTGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAG : CATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGGTTAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAG : GTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAG : ATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTTCAACTATCCGGTCAATCTTGCCGTCTCCAAGATTGCTCCTGCACTGATTGCTGGAAACTCTTTAGTCCTCAAGCCTCCAACTCAG : GGTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCTAAAGGCCTTATCAGTTGTGTGACCGGAAAAGGTTCTGAAATCGGAGATTTTCTCACTATGCATCCTGGAGTAAACTGTATAAG : CTTCACTGGTGGAGACACCGGTGTTGCAATCTCGAAGAAAGCAGGAATGGTCCCTCTACAGATGGAGCTGGGAGGAAAGGATGCTTGTATCGTGCTCGAGGATGCTGATTTAGATTTGGCTGCTGGAAACATTGTGAAAGGAGGATTTTCTTACAG : TGGTCAAAGATGCACAGCTGTTAAGGTCGTGTTGGTGATGGAATCTGTTGCTGACATTCTTGTTGAGAAGGTAAATGCCAAAGTGGCAAAGTTAACCGTTGGGCCACCTGAAGATAATTGTGATATCACTCCAGTTGTCTCCGAGTCATCCGCAAATTTCATCGAGGGGTTGGTCATGGACGCAAAGGAGAAAGATGCAACATTTTGCCAGCCATACAAGAGAGAAGGCAACCTTATCTGGCCCTTGTTGTTAGACAATGTTAGGCCGGACATGAGAATCGCTTGGGAAGAACCCTTTGGTCCAGTTTTGCCCGTTATTCGGATAAACTCAGTCGAAGAAGGAATTCACCACTGCAATGCTAGCAATTTCGGTCTGCAG : GGTTGTGTGTTCACCAAAGACATCAACAAAGCAATACTGATCAGTGATGCAATGGAAACCGGAACCGTTCAGATTAACTCAGCTCCTGCTCGTGGACCGGATCATTTTCCGTTCCAG : GGTATTAAGGACAGCGGAATTGGATCACAAGGGATCACTAACAGTATTAACATGATGACTAAAGTGAAGACCACTGTGATCAATTTGCCAACCCCTTCTTATACTATGGGGTAAATTAATCACTGTTTTTTGCTTTAGAAATTTGACAAAAATAATTAAGAATCCATGTTGTGGATGTTAATAAGCTCACACCAATTATTGTTCATTTCTTGACCTTATGAAGATTAATATTGGTGGATTAGTATTTAGCATTATTTTC</gDNA_template>
            <first_frame> S  T  K  Y  H  H  R  *  I  I  M  Y  L  Q  V  K  C  C  :  Y  F  P  L  S  F  I  *  V  D  Q  S  T  L  M  A  F  T  K  P  L  L  A  K  S  F  K  K  K  S  R  L  Q  V  Q  N  T   : I  F  F  F  F  G  K  N  Q  L  L  E  N  L  L  L  L  L  I  L  L  Q  E  R  H  N  T  K  F  K  :  H  V  H  K  K  R  *  T  K  *  W  K  *  Q  K  Q  H  K  N  H  G  L  K  H  H  Y  G  K  E  Q  S  Y  F  I  R  Q  L  Q  F  *  K  N  T  K  P  L  L  L  N  A  L  V  K  K  L  Q  N  Q  L  K  M  L  S  P  R :   L  *  D  L  V  I  W  F  L  T  L  L  K  K  E  L  E  F  *  G  R  V  S  S  W  Y  L  I  V  S  L  E  M  K  G  P  N  T  V  *  H  P  R :   Y  R  W  V  *  F  W  R  F  L  L  S  T  I  R  S  I  L  P  S  P  R  L  L  L  H  *  L  L  E  T  L  *  S  S  S  L  Q  L  R :   V  L  W  L  P  C  I  W  C  I  A  S  T  *  L  D  S  L  K  A  L  S  V  V  *  P  E  K  V  L  K  S  E  I  F  S  L  C  I  L  E  *  T  V  *   : A  S  L  V  E  T  P  V  L  Q  S  R  R  K  Q  E  W  S  L  Y  R  W  S  W  E  E  R  M  L  V  S  C  S  R  M  L  I  *  I  W  L  L  E  T  L  *  K  E  D  F  L  T   : V  V  K  D  A  Q  L  L  R  S  C  W  *  W  N  L  L  L  T  F  L  L  R  R  *  M  P  K  W  Q  S  *  P  L  G  H  L  K  I  I  V  I  S  L  Q  L  S  P  S  H  P  Q  I  S  S  R  G  W  S  W  T  Q  R  R  K  M  Q  H  F  A  S  H  T  R  E  K  A  T  L  S  G  P  C  C  *  T  M  L  G  R  T  *  E  S  L  G  K  N  P  L  V  Q  F  C  P  L  F  G  *  T  Q  S  K  K  E  F  T  T  A  M  L  A  I  S  V  C  R :   V  V  C  S  P  K  T  S  T  K  Q  Y  *  S  V  M  Q  W  K  P  E  P  F  R  L  T  Q  L  L  L  V  D  R  I  I  F  R  S  R :   V  L  R  T  A  E  L  D  H  K  G  S  L  T  V  L  T  *  *  L  K  *  R  P  L  *  S  I  C  Q  P  L  L  I  L  W  G  K  L  I  T  V  F  C  F  R  N  L  T  K  I  I  K  N  P  C  C  G  C  *  *  A  H  T  N  Y  C  S  F  L  D  L  M  K  I  N  I  G  G  L  V  F  S  I  I  F </first_frame>
            <second_frame>  Q  L  N  I  T  I  D  K  S  *  C  I  Y  K  L  S  V  V :   I  S  L  S  L  L  F  R  L  I  N  Q  L  *  W  L  L  Q  S  L  Y  W  Q  N  H  S  K  K  S  Q  G  Y  K  C  K  T  L  :  F  F  F  F  L  E  K  I  S  F  W  K  I  C  C  Y  Y  *  S  Y  Y  K  K  D  T  I  Q  S  S  S :   M  Y  T  R  R  G  E  Q  S  N  G  N  S  K  S  S  T  K  I  M  G  *  N  T  T  M  E  K  S  R  V  T  S  *  G  S  C  N  F  E  R  T  Q  S  P  Y  C  *  M  P  W  L  R  N  C  K  T  S  *  R  C  C  H  R   : G  C  E  I  W  *  F  G  F  L  H  C  *  R  R  S  *  N  S  R  G  G  *  V  L  G  I  *  *  F  P  W  K  *  K  D  Q  I  L  S  N  I  Q   : D  T  V  G  C  D  S  G  D  S  S  F  Q  L  S  G  Q  S  C  R  L  Q  D  C  S  C  T  D  C  W  K  L  F  S  P  Q  A  S  N  S   : G  C  C  G  C  P  A  Y  G  A  L  L  P  L  S  W  I  P  *  R  P  Y  Q  L  C  D  R  K  R  F  *  N  R  R  F  S  H  Y  A  S  W  S  K  L  Y  K  :  L  H  W  W  R  H  R  C  C  N  L  E  E  S  R  N  G  P  S  T  D  G  A  G  R  K  G  C  L  Y  R  A  R  G  C  *  F  R  F  G  C  W  K  H  C  E  R  R  I  F  L  Q  :  W  S  K  M  H  S  C  *  G  R  V  G  D  G  I  C  C  *  H  S  C  *  E  G  K  C  Q  S  G  K  V  N  R  W  A  T  *  R  *  L  *  Y  H  S  S  C  L  R  V  I  R  K  F  H  R  G  V  G  H  G  R  K  G  E  R  C  N  I  L  P  A  I  Q  E  R  R  Q  P  Y  L  A  L  V  V  R  Q  C  *  A  G  H  E  N  R  L  G  R  T  L  W  S  S  F  A  R  Y  S  D  K  L  S  R  R  R  N  S  P  L  Q  C  *  Q  F  R  S  A   : G  L  C  V  H  Q  R  H  Q  Q  S  N  T  D  Q  *  C  N  G  N  R  N  R  S  D  *  L  S  S  C  S  W  T  G  S  F  S  V  P   : G  Y  *  G  Q  R  N  W  I  T  R  D  H  *  Q  Y  *  H  D  D  *  S  E  D  H  C  D  Q  F  A  N  P  F  L  Y  Y  G  V  N  *  S  L  F  F  A  L  E  I  *  Q  K  *  L  R  I  H  V  V  D  V  N  K  L  T  P  I  I  V  H  F  L  T  L  *  R  L  I  L  V  D  *  Y  L  A  L  F   </second_frame>
            <third_frame>   N  *  I  S  P  S  I  N  H  N  V  F  T  S  *  V  L   : L  F  P  S  L  F  Y  L  G  *  S  I  N  S  N  G  F  Y  K  A  F  I  G  K  I  I  Q  K  K  V  K  A  T  S  A  K  H  Y :   F  F  F  F  W  K  K  S  A  S  G  K  S  V  A  I  I  N  P  T  T  R  K  T  Q  Y  K  V  Q   : A  C  T  Q  E  E  V  N  K  V  M  E  I  A  K  A  A  Q  K  S  W  A  K  T  P  L  W  K  R  A  E  L  L  H  K  A  A  A  I  L  K  E  H  K  A  P  I  A  E  C  L  G  *  E  I  A  K  P  A  K  D  A  V  T  E  :  V  V  R  S  G  D  L  V  S  Y  T  A  E  E  G  V  R  I  L  G  E  G  K  F  L  V  S  D  S  F  P  G  N  E  R  T  K  Y  C  L  T  S  K  :  I  P  L  G  V  I  L  A  I  P  P  F  N  Y  P  V  N  L  A  V  S  K  I  A  P  A  L  I  A  G  N  S  L  V  L  K  P  P  T  Q  :  G  A  V  A  A  L  H  M  V  H  C  F  H  L  A  G  F  P  K  G  L  I  S  C  V  T  G  K  G  S  E  I  G  D  F  L  T  M  H  P  G  V  N  C  I  S :   F  T  G  G  D  T  G  V  A  I  S  K  K  A  G  M  V  P  L  Q  M  E  L  G  G  K  D  A  C  I  V  L  E  D  A  D  L  D  L  A  A  G  N  I  V  K  G  G  F  S  Y  S :   G  Q  R  C  T  A  V  K  V  V  L  V  M  E  S  V  A  D  I  L  V  E  K  V  N  A  K  V  A  K  L  T  V  G  P  P  E  D  N  C  D  I  T  P  V  V  S  E  S  S  A  N  F  I  E  G  L  V  M  D  A  K  E  K  D  A  T  F  C  Q  P  Y  K  R  E  G  N  L  I  W  P  L  L  L  D  N  V  R  P  D  M  R  I  A  W  E  E  P  F  G  P  V  L  P  V  I  R  I  N  S  V  E  E  G  I  H  H  C  N  A  S  N  F  G  L  Q  :  G  C  V  F  T  K  D  I  N  K  A  I  L  I  S  D  A  M  E  T  G  T  V  Q  I  N  S  A  P  A  R  G  P  D  H  F  P  F  Q  :  G  I  K  D  S  G  I  G  S  Q  G  I  T  N  S  I  N  M  M  T  K  V  K  T  T  V  I  N  L  P  T  P  S  Y  T  M  G  *  I  N  H  C  F  L  L  *  K  F  D  K  N  N  *  E  S  M  L  W  M  L  I  S  S  H  Q  L  L  F  I  S  *  P  Y  E  D  *  Y  W  W  I  S  I  *  H  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20336" stop="20301"/>
                    <exon start="19891" stop="19763"/>
                    <exon start="18892" stop="18773"/>
                    <exon start="18443" stop="18307"/>
                    <exon start="17972" stop="17817"/>
                    <exon start="17505" stop="17127"/>
                    <exon start="16817" stop="16701"/>
                    <exon start="16603" stop="16490"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1185</number_coding_nucleotides>
                  <number_encoded_amino_acids>395</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIAKPAKDAVTEVVRSGDLVSYTAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGVAISKKAGMVPLQMELGGKDACIVLEDADLDLAAGNIVKGGFSYSGQRCTAVKVVLVMESVADILVEKVNAKVAKLTVGPPEDNCDITPVVSESSANFIEGLVMDAKEKDATFCQPYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDINKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKVKTTVINLPTPSYTMG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21382" stop="21300"/>
                    <exon start="21210" stop="21122"/>
                    <exon start="20494" stop="20337"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SINSNGFYKAFIGKIIQKKVKATSAKHYFFFFWKKSASGKSVAIINPTTRKTQYKVQACTQEEVNKVMEIAKAAQKSWAKTPLWKRAELLHKAAAILKEHKAPIAECLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="72217" PGL_stop="73661"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72217" e_stop="73661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="72217" e_stop="73661" e_length="1445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72217" stop="73661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72222" stop="72952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9111-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCTCTTCGATTTCTCTTCAATTCAGGTATTCTTTTTTAAATTTCTCTTCGATTTCAATTCATAAACCCTAATAATGGAACCCCAAATGCGCAATTTCCCAGTTTTTATACAATCGCCAGAGCTTCAGATCCCTACTCATGTCCTAAATATTGAAAACCCTAATCCTAATTTCACTTTGCAAGACCTCAAATCATGTTTGCTTGAAAAAACCCAGAAATCATTGGCTGCAATTAAGGATTCTGTCTATCTTACTTTTGATGGTCGACCCATTAAGGATTCAACTCTATTATATGGTTCTGGGATTAGCCCGTTTTCCACTTTGGTACTACGTTTCCGCCTTCGTGGTGGTGGTGGTGATGGAGGTGCCACGGGAGCGGAGTCCCGAGACTGTTATCTCAAGATGTATGCTGTTAAGAAACCGGATAAAATTGATCCAAATGAGATTAGGTTGTCTAGATGGTTGAATTGTGCGTTGTCGAACGAGTCATTAAAGCATCCTGTTGTTATTGATAAGCTTGGGAATTTGTTCAATAAGGAGACGTTAGTTGAGGCTTTATTGAAGAAAAGGCTGCCTAAGCAGTTTGGGTATATAAAGGGATTGAAAGATATGATTCCGGTTGAGCTATCGGTGATTCCGGGCAAAGAGGATAGAGGGCTTGGTGATGGTGAAGGGACTGGGTTTCAGTGCCCGGTAACAGGGTTGGAGTTCAATGGGAAGTACAAGTTCTTTGCTTTGAGGGGTTGTGGGCATGTTTTGAGTGCAAAAGCTTTGAAGGAGGTGAAATCCTCGGCTTGTTTGGTTTGCCACAAGGAGGTTGTGGAGAGTGACAAAATTGTGATCAACGGGAGTGAAGAAGAGGTTGCGGCTTTGAGGGAGAGAATGGAGGAAGAAAGGGTGAAATTGAAGGATAGTAAGAAGGTGAAGAAGGGGAGGAATGTGGATGTAGCTGTGAATGGTGAAGAGGTCATTGGGGCATCACGCTTGAGCGGAATGAAACATGGGATTGAGGATAAGCTGGTAGGCAAGGATGCAAGGAAAGTGGAAGGGAATGGTAAAATTGGCATTAAAAGTAAGATTGAAGTTAAGGATGTGAAGAATAGTTCGAGCAACGGGTCTGGGAAGAGGTTTAAGGCTGTTGATGTAGCTCCAGCTCATGCTACAAAGGAAGTCTATGCCTCCATTTTCACTTCATCAAGAAAGTCTGACTTCAAGGAGACTTATTCTTGCAGATCTTTGCCCCTTGGAAGAAACTGATAGCTGTTTTTGTCGAGGTGATCTGCTAGTGTCTTGGACTGGTTTTATTGTCTTAAAATGTTGTTTCACGATAGATAGTTACATGCTAGACCACTGAGTCGTAGATGTTGCCTCTTGCCATTTGATTCAGTCGGTACTTTATATGTATAACATACATTGTTATTGTACATTTGATGTTGCTTTTCAGA</gDNA_template>
            <first_frame> E  L  F  D  F  S  S  I  Q  V  F  F  F  K  F  L  F  D  F  N  S  *  T  L  I  M  E  P  Q  M  R  N  F  P  V  F  I  Q  S  P  E  L  Q  I  P  T  H  V  L  N  I  E  N  P  N  P  N  F  T  L  Q  D  L  K  S  C  L  L  E  K  T  Q  K  S  L  A  A  I  K  D  S  V  Y  L  T  F  D  G  R  P  I  K  D  S  T  L  L  Y  G  S  G  I  S  P  F  S  T  L  V  L  R  F  R  L  R  G  G  G  G  D  G  G  A  T  G  A  E  S  R  D  C  Y  L  K  M  Y  A  V  K  K  P  D  K  I  D  P  N  E  I  R  L  S  R  W  L  N  C  A  L  S  N  E  S  L  K  H  P  V  V  I  D  K  L  G  N  L  F  N  K  E  T  L  V  E  A  L  L  K  K  R  L  P  K  Q  F  G  Y  I  K  G  L  K  D  M  I  P  V  E  L  S  V  I  P  G  K  E  D  R  G  L  G  D  G  E  G  T  G  F  Q  C  P  V  T  G  L  E  F  N  G  K  Y  K  F  F  A  L  R  G  C  G  H  V  L  S  A  K  A  L  K  E  V  K  S  S  A  C  L  V  C  H  K  E  V  V  E  S  D  K  I  V  I  N  G  S  E  E  E  V  A  A  L  R  E  R  M  E  E  E  R  V  K  L  K  D  S  K  K  V  K  K  G  R  N  V  D  V  A  V  N  G  E  E  V  I  G  A  S  R  L  S  G  M  K  H  G  I  E  D  K  L  V  G  K  D  A  R  K  V  E  G  N  G  K  I  G  I  K  S  K  I  E  V  K  D  V  K  N  S  S  S  N  G  S  G  K  R  F  K  A  V  D  V  A  P  A  H  A  T  K  E  V  Y  A  S  I  F  T  S  S  R  K  S  D  F  K  E  T  Y  S  C  R  S  L  P  L  G  R  N  *  *  L  F  L  S  R  *  S  A  S  V  L  D  W  F  Y  C  L  K  M  L  F  H  D  R  *  L  H  A  R  P  L  S  R  R  C  C  L  L  P  F  D  S  V  G  T  L  Y  V  *  H  T  L  L  L  Y  I  *  C  C  F  S   </first_frame>
            <second_frame>  S  S  S  I  S  L  Q  F  R  Y  S  F  L  N  F  S  S  I  S  I  H  K  P  *  *  W  N  P  K  C  A  I  S  Q  F  L  Y  N  R  Q  S  F  R  S  L  L  M  S  *  I  L  K  T  L  I  L  I  S  L  C  K  T  S  N  H  V  C  L  K  K  P  R  N  H  W  L  Q  L  R  I  L  S  I  L  L  L  M  V  D  P  L  R  I  Q  L  Y  Y  M  V  L  G  L  A  R  F  P  L  W  Y  Y  V  S  A  F  V  V  V  V  V  M  E  V  P  R  E  R  S  P  E  T  V  I  S  R  C  M  L  L  R  N  R  I  K  L  I  Q  M  R  L  G  C  L  D  G  *  I  V  R  C  R  T  S  H  *  S  I  L  L  L  L  I  S  L  G  I  C  S  I  R  R  R  *  L  R  L  Y  *  R  K  G  C  L  S  S  L  G  I  *  R  D  *  K  I  *  F  R  L  S  Y  R  *  F  R  A  K  R  I  E  G  L  V  M  V  K  G  L  G  F  S  A  R  *  Q  G  W  S  S  M  G  S  T  S  S  L  L  *  G  V  V  G  M  F  *  V  Q  K  L  *  R  R  *  N  P  R  L  V  W  F  A  T  R  R  L  W  R  V  T  K  L  *  S  T  G  V  K  K  R  L  R  L  *  G  R  E  W  R  K  K  G  *  N  *  R  I  V  R  R  *  R  R  G  G  M  W  M  *  L  *  M  V  K  R  S  L  G  H  H  A  *  A  E  *  N  M  G  L  R  I  S  W  *  A  R  M  Q  G  K  W  K  G  M  V  K  L  A  L  K  V  R  L  K  L  R  M  *  R  I  V  R  A  T  G  L  G  R  G  L  R  L  L  M  *  L  Q  L  M  L  Q  R  K  S  M  P  P  F  S  L  H  Q  E  S  L  T  S  R  R  L  I  L  A  D  L  C  P  L  E  E  T  D  S  C  F  C  R  G  D  L  L  V  S  W  T  G  F  I  V  L  K  C  C  F  T  I  D  S  Y  M  L  D  H  *  V  V  D  V  A  S  C  H  L  I  Q  S  V  L  Y  M  Y  N  I  H  C  Y  C  T  F  D  V  A  F  Q  </second_frame>
            <third_frame>   A  L  R  F  L  F  N  S  G  I  L  F  *  I  S  L  R  F  Q  F  I  N  P  N  N  G  T  P  N  A  Q  F  P  S  F  Y  T  I  A  R  A  S  D  P  Y  S  C  P  K  Y  *  K  P  *  S  *  F  H  F  A  R  P  Q  I  M  F  A  *  K  N  P  E  I  I  G  C  N  *  G  F  C  L  S  Y  F  *  W  S  T  H  *  G  F  N  S  I  I  W  F  W  D  *  P  V  F  H  F  G  T  T  F  P  P  S  W  W  W  W  *  W  R  C  H  G  S  G  V  P  R  L  L  S  Q  D  V  C  C  *  E  T  G  *  N  *  S  K  *  D  *  V  V  *  M  V  E  L  C  V  V  E  R  V  I  K  A  S  C  C  Y  *  *  A  W  E  F  V  Q  *  G  D  V  S  *  G  F  I  E  E  K  A  A  *  A  V  W  V  Y  K  G  I  E  R  Y  D  S  G  *  A  I  G  D  S  G  Q  R  G  *  R  A  W  *  W  *  R  D  W  V  S  V  P  G  N  R  V  G  V  Q  W  E  V  Q  V  L  C  F  E  G  L  W  A  C  F  E  C  K  S  F  E  G  G  E  I  L  G  L  F  G  L  P  Q  G  G  C  G  E  *  Q  N  C  D  Q  R  E  *  R  R  G  C  G  F  E  G  E  N  G  G  R  K  G  E  I  E  G  *  *  E  G  E  E  G  E  E  C  G  C  S  C  E  W  *  R  G  H  W  G  I  T  L  E  R  N  E  T  W  D  *  G  *  A  G  R  Q  G  C  K  E  S  G  R  E  W  *  N  W  H  *  K  *  D  *  S  *  G  C  E  E  *  F  E  Q  R  V  W  E  E  V  *  G  C  *  C  S  S  S  S  C  Y  K  G  S  L  C  L  H  F  H  F  I  K  K  V  *  L  Q  G  D  L  F  L  Q  I  F  A  P  W  K  K  L  I  A  V  F  V  E  V  I  C  *  C  L  G  L  V  L  L  S  *  N  V  V  S  R  *  I  V  T  C  *  T  T  E  S  *  M  L  P  L  A  I  *  F  S  R  Y  F  I  C  I  T  Y  I  V  I  V  H  L  M  L  L  F  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72283" stop="73473"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1188</number_coding_nucleotides>
                  <number_encoded_amino_acids>396</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLIMEPQMRNFPVFIQSPELQIPTHVLNIENPNPNFTLQDLKSCLLEKTQKSLAAIKDSVYLTFDGRPIKDSTLLYGSGISPFSTLVLRFRLRGGGGDGGATGAESRDCYLKMYAVKKPDKIDPNEIRLSRWLNCALSNESLKHPVVIDKLGNLFNKETLVEALLKKRLPKQFGYIKGLKDMIPVELSVIPGKEDRGLGDGEGTGFQCPVTGLEFNGKYKFFALRGCGHVLSAKALKEVKSSACLVCHKEVVESDKIVINGSEEEVAALRERMEEERVKLKDSKKVKKGRNVDVAVNGEEVIGASRLSGMKHGIEDKLVGKDARKVEGNGKIGIKSKIEVKDVKNSSSNGSGKRFKAVDVAPAHATKEVYASIFTSSRKSDFKETYSCRSLPLGRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="95079" PGL_stop="95607"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95079" e_stop="95607"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="95079" e_stop="95607" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95079" stop="95607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M604-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCATGGGGGGTGCATTGTCTCCTTCGCCTCGATTATACTTATCTGAGCCTTAATGAAGTCCAATTTGCTTTGCAGTACCTTTTTCCTCAGTCAATACTAGCTCTGTTTGCAGCAAGTAAGCATCATTACTTATGTTTCTGCTTATCTGTAGGCTGTGATGATATAGAGCTTATTGAGTTAATCGGGTTTTGCTCAGCTCAAACCCAAATCTTGGTAAGGATAACTAAACTGTGTTTTAAATGGTGCAACGACTATTGGGACGTGATTGAGTGGAAGAGATATTAGGAATTCATTTAGCTTATCCAACTAGATTGTTGTTGTATGCTATTCTGGTTTGCAGCTATGGCGGTATCCCTTTCATTTTCCCGATTTCGTGACATATCTGAGCCTAGTTGATTACTCAACTGAGAATAATTCGTCGAGAGTAGAACACTGGAGAATATGAATTAGGCAGCATTGTGATGGGCAGTTTTTAGCAATATATGAATGTTAATAGTTTTATGTTATCATGGAAATGGTGGCATTCGTT</gDNA_template>
            <first_frame> P  W  G  V  H  C  L  L  R  L  D  Y  T  Y  L  S  L  N  E  V  Q  F  A  L  Q  Y  L  F  P  Q  S  I  L  A  L  F  A  A  S  K  H  H  Y  L  C  F  C  L  S  V  G  C  D  D  I  E  L  I  E  L  I  G  F  C  S  A  Q  T  Q  I  L  V  R  I  T  K  L  C  F  K  W  C  N  D  Y  W  D  V  I  E  W  K  R  Y  *  E  F  I  *  L  I  Q  L  D  C  C  C  M  L  F  W  F  A  A  M  A  V  S  L  S  F  S  R  F  R  D  I  S  E  P  S  *  L  L  N  *  E  *  F  V  E  S  R  T  L  E  N  M  N  *  A  A  L  *  W  A  V  F  S  N  I  *  M  L  I  V  L  C  Y  H  G  N  G  G  I  R  </first_frame>
            <second_frame>  H  G  G  C  I  V  S  F  A  S  I  I  L  I  *  A  L  M  K  S  N  L  L  C  S  T  F  F  L  S  Q  Y  *  L  C  L  Q  Q  V  S  I  I  T  Y  V  S  A  Y  L  *  A  V  M  I  *  S  L  L  S  *  S  G  F  A  Q  L  K  P  K  S  W  *  G  *  L  N  C  V  L  N  G  A  T  T  I  G  T  *  L  S  G  R  D  I  R  N  S  F  S  L  S  N  *  I  V  V  V  C  Y  S  G  L  Q  L  W  R  Y  P  F  H  F  P  D  F  V  T  Y  L  S  L  V  D  Y  S  T  E  N  N  S  S  R  V  E  H  W  R  I  *  I  R  Q  H  C  D  G  Q  F  L  A  I  Y  E  C  *  *  F  Y  V  I  M  E  M  V  A  F  V </second_frame>
            <third_frame>   M  G  G  A  L  S  P  S  P  R  L  Y  L  S  E  P  *  *  S  P  I  C  F  A  V  P  F  S  S  V  N  T  S  S  V  C  S  K  *  A  S  L  L  M  F  L  L  I  C  R  L  *  *  Y  R  A  Y  *  V  N  R  V  L  L  S  S  N  P  N  L  G  K  D  N  *  T  V  F  *  M  V  Q  R  L  L  G  R  D  *  V  E  E  I  L  G  I  H  L  A  Y  P  T  R  L  L  L  Y  A  I  L  V  C  S  Y  G  G  I  P  F  I  F  P  I  S  *  H  I  *  A  *  L  I  T  Q  L  R  I  I  R  R  E  *  N  T  G  E  Y  E  L  G  S  I  V  M  G  S  F  *  Q  Y  M  N  V  N  S  F  M  L  S  W  K  W  W  H  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95079" stop="95363"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PWGVHCLLRLDYTYLSLNEVQFALQYLFPQSILALFAASKHHYLCFCLSVGCDDIELIELIGFCSAQTQILVRITKLCFKWCNDYWDVIEWKRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="96455" PGL_stop="95954"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96455" e_stop="95954"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96455" e_stop="95954" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96455" stop="95954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M604-F" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96455" stop="95975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M210-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTCAGTTAGCAAAACAATGGCTCCAATATGCCTGACCCAACTCTAGAAAACTTCATTTGTCATCATTACAGCCTGAACAAGGAGTAGTAGTATAGTGCGCCTAAATTCAGTTAATATGGAGTATAATTTTAGCTAAACACCACACAATTTAAGCCAATCCAAACAAACCATCAGCTGAAGAACAGCGAGAGGGCAACCACCATTAATAACTCCCCAATGCCTCTCTCGTCGTCCAGAGTTTCATTAACACAAACTTTGATTTAGTACATGTAGTATCTTCCTGTTACATTTCTACTTAGTCACATTTCTATTTTAAAAGTATACCTAATAAGTTTGATAATGCATATTTTCACTCTTAGAATTCATAGTTAGCAAATAGATATAGCAATTGTTCGGAGCTCATTAATAATCATCAGGTGTTGTAACTGAGAGCGTGTTTGTCTTTCTTTTGTTCATAGTTTGATATTCTGAACAGTAAACAGATATCTTTTATAATGAGG</gDNA_template>
            <first_frame> T  S  V  S  K  T  M  A  P  I  C  L  T  Q  L  *  K  T  S  F  V  I  I  T  A  *  T  R  S  S  S  I  V  R  L  N  S  V  N  M  E  Y  N  F  S  *  T  P  H  N  L  S  Q  S  K  Q  T  I  S  *  R  T  A  R  G  Q  P  P  L  I  T  P  Q  C  L  S  R  R  P  E  F  H  *  H  K  L  *  F  S  T  C  S  I  F  L  L  H  F  Y  L  V  T  F  L  F  *  K  Y  T  *  *  V  *  *  C  I  F  S  L  L  E  F  I  V  S  K  *  I  *  Q  L  F  G  A  H  *  *  S  S  G  V  V  T  E  S  V  F  V  F  L  L  F  I  V  *  Y  S  E  Q  *  T  D  I  F  Y  N  E  </first_frame>
            <second_frame>  P  Q  L  A  K  Q  W  L  Q  Y  A  *  P  N  S  R  K  L  H  L  S  S  L  Q  P  E  Q  G  V  V  V  *  C  A  *  I  Q  L  I  W  S  I  I  L  A  K  H  H  T  I  *  A  N  P  N  K  P  S  A  E  E  Q  R  E  G  N  H  H  *  *  L  P  N  A  S  L  V  V  Q  S  F  I  N  T  N  F  D  L  V  H  V  V  S  S  C  Y  I  S  T  *  S  H  F  Y  F  K  S  I  P  N  K  F  D  N  A  Y  F  H  S  *  N  S  *  L  A  N  R  Y  S  N  C  S  E  L  I  N  N  H  Q  V  L  *  L  R  A  C  L  S  F  F  C  S  *  F  D  I  L  N  S  K  Q  I  S  F  I  M  R </second_frame>
            <third_frame>   L  S  *  Q  N  N  G  S  N  M  P  D  P  T  L  E  N  F  I  C  H  H  Y  S  L  N  K  E  *  *  Y  S  A  P  K  F  S  *  Y  G  V  *  F  *  L  N  T  T  Q  F  K  P  I  Q  T  N  H  Q  L  K  N  S  E  R  A  T  T  I  N  N  S  P  M  P  L  S  S  S  R  V  S  L  T  Q  T  L  I  *  Y  M  *  Y  L  P  V  T  F  L  L  S  H  I  S  I  L  K  V  Y  L  I  S  L  I  M  H  I  F  T  L  R  I  H  S  *  Q  I  D  I  A  I  V  R  S  S  L  I  I  I  R  C  C  N  *  E  R  V  C  L  S  F  V  H  S  L  I  F  *  T  V  N  R  Y  L  L  *  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0002D20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="111426" PGL_stop="111921"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111426" e_stop="111921"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111426" e_stop="111921" e_length="496"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111426" stop="111921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M141-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCCATGGAAGAGTGAACTTCATCTGAAAGAGGCTGTGATGATTATTGTTTATCGGCATTTACAAAAATGGTCTTTTTTTGAGGCCACTTTAAATTCCGTGCTCATTTCCTTTTGGGCATAGAGACATCCTGACCTGTATCTTGGCTTGGCAAACACCAACAAGGGCTGTGATTTTAGGCTTCTCTTTCACAATCCAATTGGTTATTTTGCATCCATGGCATGGTTGCCTTATCTTTACCCCAATAGAAAATTGAGACTGAGCCTCATTTTCCAAATTTCCTTCCTTACAACCTGGGAATAGAACACGAGACCTTCTTTGACGGAGAGAGATCAATAACACCCTCTTTATGCGACCGTTGATAGTTTTCAATGGTAATTTACTCTGGAATTGGTATTCTTTAGTTTTATGTGTTAAGAATGACGTGATAACCAACTACACCACCACAAAGGATTCTCGATGTGGATGACCATCTTTAACATGCCAATGATTTTTT</gDNA_template>
            <first_frame> N  P  W  K  S  E  L  H  L  K  E  A  V  M  I  I  V  Y  R  H  L  Q  K  W  S  F  F  E  A  T  L  N  S  V  L  I  S  F  W  A  *  R  H  P  D  L  Y  L  G  L  A  N  T  N  K  G  C  D  F  R  L  L  F  H  N  P  I  G  Y  F  A  S  M  A  W  L  P  Y  L  Y  P  N  R  K  L  R  L  S  L  I  F  Q  I  S  F  L  T  T  W  E  *  N  T  R  P  S  L  T  E  R  D  Q  *  H  P  L  Y  A  T  V  D  S  F  Q  W  *  F  T  L  E  L  V  F  F  S  F  M  C  *  E  *  R  D  N  Q  L  H  H  H  K  G  F  S  M  W  M  T  I  F  N  M  P  M  I  F  </first_frame>
            <second_frame>  I  H  G  R  V  N  F  I  *  K  R  L  *  *  L  L  F  I  G  I  Y  K  N  G  L  F  L  R  P  L  *  I  P  C  S  F  P  F  G  H  R  D  I  L  T  C  I  L  A  W  Q  T  P  T  R  A  V  I  L  G  F  S  F  T  I  Q  L  V  I  L  H  P  W  H  G  C  L  I  F  T  P  I  E  N  *  D  *  A  S  F  S  K  F  P  S  L  Q  P  G  N  R  T  R  D  L  L  *  R  R  E  I  N  N  T  L  F  M  R  P  L  I  V  F  N  G  N  L  L  W  N  W  Y  S  L  V  L  C  V  K  N  D  V  I  T  N  Y  T  T  T  K  D  S  R  C  G  *  P  S  L  T  C  Q  *  F  F </second_frame>
            <third_frame>   S  M  E  E  *  T  S  S  E  R  G  C  D  D  Y  C  L  S  A  F  T  K  M  V  F  F  *  G  H  F  K  F  R  A  H  F  L  L  G  I  E  T  S  *  P  V  S  W  L  G  K  H  Q  Q  G  L  *  F  *  A  S  L  S  Q  S  N  W  L  F  C  I  H  G  M  V  A  L  S  L  P  Q  *  K  I  E  T  E  P  H  F  P  N  F  L  P  Y  N  L  G  I  E  H  E  T  F  F  D  G  E  R  S  I  T  P  S  L  C  D  R  *  *  F  S  M  V  I  Y  S  G  I  G  I  L  *  F  Y  V  L  R  M  T  *  *  P  T  T  P  P  Q  R  I  L  D  V  D  D  H  L  *  H  A  N  D  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0002D20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="113368" PGL_stop="112892"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113368" e_stop="112892"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113368" e_stop="112892" e_length="477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113368" stop="112892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M141-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGCCGAAATTTCAACACACGCAATAGGTTTTCCAACCAGGGAATAGACTCACCATGGAAGATCATGAAATGGGTTATTCAGGGCTCAGATTTGTTGTATTTCTTAACAAAGAAAAGAGAAGAACGCCACAGCCATGGATGCAGACACCAGTTTGCTATTCAAAGCCATAACCGGGTCGCCCAGCTAAGATGCAGGTTTTTCTCAATGCTATATTGAACACAGCTTCATAGCCCAAAAAGGAAAGTAAGCAATCATCATAGCCCCCTTTACAACACCAGCAGCAGCAACAGCATCACAAGAAGACGAGAGGAAGAACAACAAGAGTACAGAGGTGTGTTTGGATGACATTTTTTTCCCTTTTGTTTATTTAAAAGGGCTGTTATTTTTTGGTTATCAATGGAAAAATCACTGGCAAAGCAGAGACGGGCAACCACCCTTTTACAGAAAATCCCAATTTCTCTGATGCTTCATTCTT</gDNA_template>
            <first_frame> R  A  E  I  S  T  H  A  I  G  F  P  T  R  E  *  T  H  H  G  R  S  *  N  G  L  F  R  A  Q  I  C  C  I  S  *  Q  R  K  E  K  N  A  T  A  M  D  A  D  T  S  L  L  F  K  A  I  T  G  S  P  S  *  D  A  G  F  S  Q  C  Y  I  E  H  S  F  I  A  Q  K  G  K  *  A  I  I  I  A  P  F  T  T  P  A  A  A  T  A  S  Q  E  D  E  R  K  N  N  K  S  T  E  V  C  L  D  D  I  F  F  P  F  V  Y  L  K  G  L  L  F  F  G  Y  Q  W  K  N  H  W  Q  S  R  D  G  Q  P  P  F  Y  R  K  S  Q  F  L  *  C  F  I  L </first_frame>
            <second_frame>  E  P  K  F  Q  H  T  Q  *  V  F  Q  P  G  N  R  L  T  M  E  D  H  E  M  G  Y  S  G  L  R  F  V  V  F  L  N  K  E  K  R  R  T  P  Q  P  W  M  Q  T  P  V  C  Y  S  K  P  *  P  G  R  P  A  K  M  Q  V  F  L  N  A  I  L  N  T  A  S  *  P  K  K  E  S  K  Q  S  S  *  P  P  L  Q  H  Q  Q  Q  Q  Q  H  H  K  K  T  R  G  R  T  T  R  V  Q  R  C  V  W  M  T  F  F  S  L  L  F  I  *  K  G  C  Y  F  L  V  I  N  G  K  I  T  G  K  A  E  T  G  N  H  P  F  T  E  N  P  N  F  S  D  A  S  F   </second_frame>
            <third_frame>   S  R  N  F  N  T  R  N  R  F  S  N  Q  G  I  D  S  P  W  K  I  M  K  W  V  I  Q  G  S  D  L  L  Y  F  L  T  K  K  R  E  E  R  H  S  H  G  C  R  H  Q  F  A  I  Q  S  H  N  R  V  A  Q  L  R  C  R  F  F  S  M  L  Y  *  T  Q  L  H  S  P  K  R  K  V  S  N  H  H  S  P  L  Y  N  T  S  S  S  N  S  I  T  R  R  R  E  E  E  Q  Q  E  Y  R  G  V  F  G  *  H  F  F  P  F  C  L  F  K  R  A  V  I  F  W  L  S  M  E  K  S  L  A  K  Q  R  R  A  T  T  L  L  Q  K  I  P  I  S  L  M  L  H  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113119" stop="112904"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIIIAPFTTPAAATASQEDERKNNKSTEVCLDDIFFPFVYLKGLLFFGYQWKNHWQSRDGQPPFYRKSQFL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113366" stop="113151"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRNFNTRNRFSNQGIDSPWKIMKWVIQGSDLLYFLTKKREERHSHGCRHQFAIQSHNRVAQLRCRFFSMLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 73 chains have been computed
$ 
$ memory statistics:
$ 187152 bytes spliced alignments in total
$ 10 spliced alignments have been stored
$ 18715 bytes was the average size of a spliced alignment
$ 12072 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2012 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 74 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-10 08:42:12
-->
