<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-13 17:55:54"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E280812" ref_strand="+" ref_description="SGN-E280812 	[cLEL-6-P13]">
      <seq>aatccaccattttctcttcttagtctttttttttttaattattgtgaaaggaagtttaaaatttggtgtaaaaacggctggaaatggagtatttgcagaaataattgatggagaagtgtacaaatattattgtgaaggagaatggaaaaaatcagcttctggaaaatctgttgctattattaatcctactacaagaaagatacaatacaaagttcaagcatgtacacaagaagaggtgaacaaagtaatggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="1781" stop="1043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1481" g_stop="1242" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E280812" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1481" e_stop="1242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCACCATTTTCTCTTCTTATCCTTTTTTTTTTTTAATTATTGTGAAAAAAAATCTAAAATTTGGTGTAAAAATGGCTGGAAATGGAGTATTTGCAGAAATAATTGATGGAGAAGTGTACAAATATTATTGTGAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA</genome_strand>
        <mrna_strand>AATCCACCATTTTCTCTTCTTAGTC-TTTTTTTTTTTAATTATTGTGAAAGGAAGTTTAAAATTTGGTGTAAAAACGGCTGGAAATGGAGTATTTGCAGAAATAATTGATGGAGAAGTGTACAAATATTATTGTGAAGGAGAATGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGATACAATACAAAGTTCAAGCATGTACACAAGAAGAGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E340107" ref_strand="-" ref_description="SGN-E340107 	[cTOF-3-J10]">
      <seq>aggcacccttatttggcccttgttgttagacaatgttaggccggacatgagaatcgcttgggaagaaccctttggtccagttttgcccgttattcggataaactcagtcgaagaaggaattcccccctgcaatgctagcaatttcggtttgcagggttgtgtgttccccaaagacatcaacaaagcaatattgatcagtgatgcaatggaaaccggaaccgttcagattaactcagctcctgctcgtggaccggatcattttccgttccagggtattaaggacagcggaattggatcccaagggatccctaccagtattaacatgatgactaaagtgaagccccctgtgatcaatttgccaacccctttttatactatggggtaaattaatccctgttttttgctttagaaatttgccaaaaataattaagaatccatgttgtggatgttaataagctccccccaattattgttcattttttgcccttatgaagattaaaattggtggattagtatttagcattattttcgcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="17580" stop="16042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17280" g_stop="17127" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17126" i_stop="16818" i_length="309">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16817" g_stop="16701" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="271" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16700" i_stop="16604" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16603" g_stop="16342" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="533" r_length="262" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="537" polyA_stop="585"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E340107" ref_strand="-">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340107" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17280" e_stop="17127"/>
          <exon e_start="16817" e_stop="16701"/>
          <exon e_start="16603" e_stop="16342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAACCTTATCTGGCCCTTGTTGTTAGACAATGTTAGGCCGGACATGAGAATCGCTTGGGAAGAACCCTTTGGTCCAGTTTTGCCCGTTATTCGGATAAACTCAGTCGAAGAAGGAATTCACCACTGCAATGCTAGCAATTTCGGTCTGCAGGTACTTCTTTCTCTCCATCTATCACAAGAAAAAAGTCACCCGTCTTTCGTTTGGAGGGATTAGAAAGAGATAATCTCCGCATAACCAATGTAACGTTTGATTCGCAGTATAAGAGAAATAATCCCATAGTAAATAATACTCGCATTACGTTTTACAAGAACCTAACATAACATTCAACATATAGGTTATTCACCCTATAATGATTCCGTCCTTTCATTATTATTCCCTGCATAAACAATTACTAAACGACATAACTAGCGCGTGAACCAAACGACTCCGTGGTATTTGACATTTGACTCTTAACTACAGGGTTGTGTGTTCACCAAAGACATCAACAAAGCAATACTGATCAGTGATGCAATGGAAACCGGAACCGTTCAGATTAACTCAGCTCCTGCTCGTGGACCGGATCATTTTCCGTTCCAGGTAATTAAACTCCAAATTCAACATCGCGAATTACATAATCTTGATTATCTTTGCGATAATTTCGTAGTAATTAAGGTGATTAATTTCGTTTTAACAGGGTATTAAGGACAGCGGAATTGGATCACAAGGGATCACTAACAGTATTAACATGATGACTAAAGTGAAGACCACTGTGATCAATTTGCCAACCCCTTCTTATACTATGGGGTAAATTAATCACTGTTTTTTGCTTTAGAAATTTGACAAAAATAATTAAGAATCCATGTTGTGGATGTTAATAAGCTCACACCAATTATTGTTCATTTCTTGACCTTATGAAGATTAATATTGGTGGATTAGTATTTAGCATTATTTTCGCA</genome_strand>
        <mrna_strand>AGGCACCCTTATTTGGCCCTTGTTGTTAGACAATGTTAGGCCGGACATGAGAATCGCTTGGGAAGAACCCTTTGGTCCAGTTTTGCCCGTTATTCGGATAAACTCAGTCGAAGAAGGAATTCCCCCCTGCAATGCTAGCAATTTCGGTTTGCAG.....................................................................................................................................................................................................................................................................................................................GGTTGTGTGTTCCCCAAAGACATCAACAAAGCAATATTGATCAGTGATGCAATGGAAACCGGAACCGTTCAGATTAACTCAGCTCCTGCTCGTGGACCGGATCATTTTCCGTTCCAG.................................................................................................GGTATTAAGGACAGCGGAATTGGATCCCAAGGGATCCCTACCAGTATTAACATGATGACTAAAGTGAAGCCCCCTGTGATCAATTTGCCAACCCCTTTTTATACTATGGGGTAAATTAATCCCTGTTTTTTGCTTTAGAAATTTGCCAAAAATAATTAAGAATCCATGTTGTGGATGTTAATAAGCTCCCCCCAATTATTGTTCATTTTTTGCCCTTATGAAGATTAAAATTGGTGGATTAGTATTTAGCATTATTTTCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E321361" ref_strand="+" ref_description="SGN-E321361 	[cTOB-23-H24]">
      <seq>ggcaaccttatctggcccttgttgttagacaatgttaggccggacatgagaatcgcttgggaagaaccctttggtccagttttgcccgttattcggataaactcagtcgaagaaggaattcaccactgcaatgctagcaatttcggtctgcagggttgtgtgttcaccaaagacatcaacaaagcaatactgatcagtgatgcaatggaaaccggaaccgttcagattaactcagctcctgctcgtggaccggatcattttccgttccagggtattaaggacagcggaattggatcacaagggatcactaacagtattaacatgatgactaaagtgaagaccactgtgatcaatttgccaaccccttcttatactatggggtaaattaatcactgttttttgctttagaaatttgacaaaaataattaagaatccatgttgtggatgttaataagctcacaccaattattgttcatttcttgaccttatgaagattaatattggtggattagtatttagcattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="17579" stop="16050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17279" g_stop="17127" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17126" i_stop="16818" i_length="309">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16817" g_stop="16701" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="270" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16700" i_stop="16604" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16603" g_stop="16351" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="523" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="524" polyA_stop="534"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E321361" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17279" e_stop="17127"/>
          <exon e_start="16817" e_stop="16701"/>
          <exon e_start="16603" e_stop="16351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAACCTTATCTGGCCCTTGTTGTTAGACAATGTTAGGCCGGACATGAGAATCGCTTGGGAAGAACCCTTTGGTCCAGTTTTGCCCGTTATTCGGATAAACTCAGTCGAAGAAGGAATTCACCACTGCAATGCTAGCAATTTCGGTCTGCAGGTACTTCTTTCTCTCCATCTATCACAAGAAAAAAGTCACCCGTCTTTCGTTTGGAGGGATTAGAAAGAGATAATCTCCGCATAACCAATGTAACGTTTGATTCGCAGTATAAGAGAAATAATCCCATAGTAAATAATACTCGCATTACGTTTTACAAGAACCTAACATAACATTCAACATATAGGTTATTCACCCTATAATGATTCCGTCCTTTCATTATTATTCCCTGCATAAACAATTACTAAACGACATAACTAGCGCGTGAACCAAACGACTCCGTGGTATTTGACATTTGACTCTTAACTACAGGGTTGTGTGTTCACCAAAGACATCAACAAAGCAATACTGATCAGTGATGCAATGGAAACCGGAACCGTTCAGATTAACTCAGCTCCTGCTCGTGGACCGGATCATTTTCCGTTCCAGGTAATTAAACTCCAAATTCAACATCGCGAATTACATAATCTTGATTATCTTTGCGATAATTTCGTAGTAATTAAGGTGATTAATTTCGTTTTAACAGGGTATTAAGGACAGCGGAATTGGATCACAAGGGATCACTAACAGTATTAACATGATGACTAAAGTGAAGACCACTGTGATCAATTTGCCAACCCCTTCTTATACTATGGGGTAAATTAATCACTGTTTTTTGCTTTAGAAATTTGACAAAAATAATTAAGAATCCATGTTGTGGATGTTAATAAGCTCACACCAATTATTGTTCATTTCTTGACCTTATGAAGATTAATATTGGTGGATTAGTATTTAGCATT</genome_strand>
        <mrna_strand>GGCAACCTTATCTGGCCCTTGTTGTTAGACAATGTTAGGCCGGACATGAGAATCGCTTGGGAAGAACCCTTTGGTCCAGTTTTGCCCGTTATTCGGATAAACTCAGTCGAAGAAGGAATTCACCACTGCAATGCTAGCAATTTCGGTCTGCAG.....................................................................................................................................................................................................................................................................................................................GGTTGTGTGTTCACCAAAGACATCAACAAAGCAATACTGATCAGTGATGCAATGGAAACCGGAACCGTTCAGATTAACTCAGCTCCTGCTCGTGGACCGGATCATTTTCCGTTCCAG.................................................................................................GGTATTAAGGACAGCGGAATTGGATCACAAGGGATCACTAACAGTATTAACATGATGACTAAAGTGAAGACCACTGTGATCAATTTGCCAACCCCTTCTTATACTATGGGGTAAATTAATCACTGTTTTTTGCTTTAGAAATTTGACAAAAATAATTAAGAATCCATGTTGTGGATGTTAATAAGCTCACACCAATTATTGTTCATTTCTTGACCTTATGAAGATTAATATTGGTGGATTAGTATTTAGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E216990" ref_strand="-" ref_description="SGN-E216990 	[cLEL-1-A14]">
      <seq>aatgctagcaatttcggtctgcagggttgtgtgttcaccaaagacatcaacaaagcaatactgatcagtgatgcaatggaaaccggaaccgttcagattaactcagctcctgctcgtggaccggatcattttccgttccagggtattaaggacagcggaattggatcacaagggatcactaacagtattaacatgatgactaaagtgaagaccactgtgatcaatttgccaaccccttcttatactatggggtaaattaatccactgttttttgctttagaaatttgacaaaaataattaagaatccatgttgtggatgttaataagctcacaccaattattgttcatttcttgaccttatcaagattaatattggtggattagtatttagcattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="17450" stop="16050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17150" g_stop="17127" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17126" i_stop="16818" i_length="309">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16817" g_stop="16701" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="141" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16700" i_stop="16604" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16603" g_stop="16351" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="395" r_length="254" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="396" polyA_stop="413"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E216990" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216990" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17150" e_stop="17127"/>
          <exon e_start="16817" e_stop="16701"/>
          <exon e_start="16603" e_stop="16351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCTAGCAATTTCGGTCTGCAGGTACTTCTTTCTCTCCATCTATCACAAGAAAAAAGTCACCCGTCTTTCGTTTGGAGGGATTAGAAAGAGATAATCTCCGCATAACCAATGTAACGTTTGATTCGCAGTATAAGAGAAATAATCCCATAGTAAATAATACTCGCATTACGTTTTACAAGAACCTAACATAACATTCAACATATAGGTTATTCACCCTATAATGATTCCGTCCTTTCATTATTATTCCCTGCATAAACAATTACTAAACGACATAACTAGCGCGTGAACCAAACGACTCCGTGGTATTTGACATTTGACTCTTAACTACAGGGTTGTGTGTTCACCAAAGACATCAACAAAGCAATACTGATCAGTGATGCAATGGAAACCGGAACCGTTCAGATTAACTCAGCTCCTGCTCGTGGACCGGATCATTTTCCGTTCCAGGTAATTAAACTCCAAATTCAACATCGCGAATTACATAATCTTGATTATCTTTGCGATAATTTCGTAGTAATTAAGGTGATTAATTTCGTTTTAACAGGGTATTAAGGACAGCGGAATTGGATCACAAGGGATCACTAACAGTATTAACATGATGACTAAAGTGAAGACCACTGTGATCAATTTGCCAACCCCTTCTTATACTATGGGGTAAATTAAT-CACTGTTTTTTGCTTTAGAAATTTGACAAAAATAATTAAGAATCCATGTTGTGGATGTTAATAAGCTCACACCAATTATTGTTCATTTCTTGACCTTATGAAGATTAATATTGGTGGATTAGTATTTAGCATT</genome_strand>
        <mrna_strand>AATGCTAGCAATTTCGGTCTGCAG.....................................................................................................................................................................................................................................................................................................................GGTTGTGTGTTCACCAAAGACATCAACAAAGCAATACTGATCAGTGATGCAATGGAAACCGGAACCGTTCAGATTAACTCAGCTCCTGCTCGTGGACCGGATCATTTTCCGTTCCAG.................................................................................................GGTATTAAGGACAGCGGAATTGGATCACAAGGGATCACTAACAGTATTAACATGATGACTAAAGTGAAGACCACTGTGATCAATTTGCCAACCCCTTCTTATACTATGGGGTAAATTAATCCACTGTTTTTTGCTTTAGAAATTTGACAAAAATAATTAAGAATCCATGTTGTGGATGTTAATAAGCTCACACCAATTATTGTTCATTTCTTGACCTTATCAAGATTAATATTGGTGGATTAGTATTTAGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E347063" ref_strand="+" ref_description="SGN-E347063 	[cTOF-25-N17]">
      <seq>cgttccagggtattaaggacagcggaattggatcacaagggatcactaacagtattaacatgatgactaaagtgaagaccactgtgatcaatttgccaaccccttcttatactatggggtaaattaatcactgttttttgctttagaaatttgacaaaaataattaagaatccatgttgtggatgttaataagctcacaccaattattgttcatttcttgaccttatgaagattaatattggtggattagtatttagcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="16906" stop="16053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16708" g_stop="16701" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16700" i_stop="16604" i_length="97">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16603" g_stop="16354" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="258" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="259" polyA_stop="276"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E347063" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>258</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16708" e_stop="16701"/>
          <exon e_start="16603" e_stop="16354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTCCAGGTAATTAAACTCCAAATTCAACATCGCGAATTACATAATCTTGATTATCTTTGCGATAATTTCGTAGTAATTAAGGTGATTAATTTCGTTTTAACAGGGTATTAAGGACAGCGGAATTGGATCACAAGGGATCACTAACAGTATTAACATGATGACTAAAGTGAAGACCACTGTGATCAATTTGCCAACCCCTTCTTATACTATGGGGTAAATTAATCACTGTTTTTTGCTTTAGAAATTTGACAAAAATAATTAAGAATCCATGTTGTGGATGTTAATAAGCTCACACCAATTATTGTTCATTTCTTGACCTTATGAAGATTAATATTGGTGGATTAGTATTTAGC</genome_strand>
        <mrna_strand>CGTTCCAG.................................................................................................GGTATTAAGGACAGCGGAATTGGATCACAAGGGATCACTAACAGTATTAACATGATGACTAAAGTGAAGACCACTGTGATCAATTTGCCAACCCCTTCTTATACTATGGGGTAAATTAATCACTGTTTTTTGCTTTAGAAATTTGACAAAAATAATTAAGAATCCATGTTGTGGATGTTAATAAGCTCACACCAATTATTGTTCATTTCTTGACCTTATGAAGATTAATATTGGTGGATTAGTATTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E323260" ref_strand="+" ref_description="SGN-E323260 	[cTOB-28-H17]">
      <seq>ggcaaccttatctggcccttgttgtgagacaatgttaggttggacatgagaatcgcttgggaagaaccctttggtccagttttgcccgttattcggataaactcagtcgaagaaggaattcaccactgcaatgctagcaatttcggtctgcagggttgtgtgttcaccaaagacatcaacaaagcaatactgatcagtgatgcaatggaaaccggaaccgatcagattaactcagctcctgctcgtggaccggatcattttccgttccagggtattaaggacagcggaattggatcactagggatcactaacagtattaacatgatgactaaagtgaagaccactgtgatcaatttgccaaccccttcttatactatggggtaaattaatcactgttttttgctttagaaatttgacagaaataattaagaatccatgttgtggatgttaataagctcacaccaattattgttcatttcttgaccttatgaagattaatattggtggattagtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="17579" stop="16058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17279" g_stop="17127" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17126" i_stop="16818" i_length="309">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16817" g_stop="16701" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="270" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16700" i_stop="16604" i_length="97">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16603" g_stop="16358" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="516" r_length="246" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E323260" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17279" e_stop="17127"/>
          <exon e_start="16817" e_stop="16701"/>
          <exon e_start="16603" e_stop="16358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAACCTTATCTGGCCCTTGTTGTTAGACAATGTTAGGCCGGACATGAGAATCGCTTGGGAAGAACCCTTTGGTCCAGTTTTGCCCGTTATTCGGATAAACTCAGTCGAAGAAGGAATTCACCACTGCAATGCTAGCAATTTCGGTCTGCAGGTACTTCTTTCTCTCCATCTATCACAAGAAAAAAGTCACCCGTCTTTCGTTTGGAGGGATTAGAAAGAGATAATCTCCGCATAACCAATGTAACGTTTGATTCGCAGTATAAGAGAAATAATCCCATAGTAAATAATACTCGCATTACGTTTTACAAGAACCTAACATAACATTCAACATATAGGTTATTCACCCTATAATGATTCCGTCCTTTCATTATTATTCCCTGCATAAACAATTACTAAACGACATAACTAGCGCGTGAACCAAACGACTCCGTGGTATTTGACATTTGACTCTTAACTACAGGGTTGTGTGTTCACCAAAGACATCAACAAAGCAATACTGATCAGTGATGCAATGGAAACCGGAACCGTTCAGATTAACTCAGCTCCTGCTCGTGGACCGGATCATTTTCCGTTCCAGGTAATTAAACTCCAAATTCAACATCGCGAATTACATAATCTTGATTATCTTTGCGATAATTTCGTAGTAATTAAGGTGATTAATTTCGTTTTAACAGGGTATTAAGGACAGCGGAATTGGATCACAAGGGATCACTAACAGTATTAACATGATGACTAAAGTGAAGACCACTGTGATCAATTTGCCAACCCCTTCTTATACTATGGGGTAAATTAATCACTGTTTTTTGCTTTAGAAATTTGACAAAAATAATTAAGAATCCATGTTGTGGATGTTAATAAGCTCACACCAATTATTGTTCATTTCTTGACCTTATGAAGATTAATATTGGTGGATTAGTATT</genome_strand>
        <mrna_strand>GGCAACCTTATCTGGCCCTTGTTGTGAGACAATGTTAGGTTGGACATGAGAATCGCTTGGGAAGAACCCTTTGGTCCAGTTTTGCCCGTTATTCGGATAAACTCAGTCGAAGAAGGAATTCACCACTGCAATGCTAGCAATTTCGGTCTGCAG.....................................................................................................................................................................................................................................................................................................................GGTTGTGTGTTCACCAAAGACATCAACAAAGCAATACTGATCAGTGATGCAATGGAAACCGGAACCGATCAGATTAACTCAGCTCCTGCTCGTGGACCGGATCATTTTCCGTTCCAG.................................................................................................GGTATTAAGGACAGCGGAATTGGATCACTAGGGATCACTAACAGTATTAACATGATGACTAAAGTGAAGACCACTGTGATCAATTTGCCAACCCCTTCTTATACTATGGGGTAAATTAATCACTGTTTTTTGCTTTAGAAATTTGACAGAAATAATTAAGAATCCATGTTGTGGATGTTAATAAGCTCACACCAATTATTGTTCATTTCTTGACCTTATGAAGATTAATATTGGTGGATTAGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E278495" ref_strand="+" ref_description="SGN-E278495 	[cLEL-2-B15]">
      <seq>ggtattaaggacagcggaattggatcacaagggatcactaacagtattaacatgatgactaaagtgaagaccactgtgatcaatttgccaaccccttcttatactatggggtaaattaatcactgttttttgctttagaaatttgacaaaaataattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="16903" stop="16145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16603" g_stop="16445" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E278495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>159</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16603" e_stop="16445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATTAAGGACAGCGGAATTGGATCACAAGGGATCACTAACAGTATTAACATGATGACTAAAGTGAAGACCACTGTGATCAATTTGCCAACCCCTTCTTATACTATGGGGTAAATTAATCACTGTTTTTTGCTTTAGAAATTTGACAAAAATAATTAA</genome_strand>
        <mrna_strand>GGTATTAAGGACAGCGGAATTGGATCACAAGGGATCACTAACAGTATTAACATGATGACTAAAGTGAAGACCACTGTGATCAATTTGCCAACCCCTTCTTATACTATGGGGTAAATTAATCACTGTTTTTTGCTTTAGAAATTTGACAAAAATAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E265475" ref_strand="+" ref_description="SGN-E265475 	[cLEI-9-L22]">
      <seq>tcgtgttggtgatggaatctgttgctgacattcttgttgagaaggtaaatgccaaagtggcaaagttaaccgttgggccacctgaagataattgtgatatcactccagttgtctccgagtcatccgcaaatttcatcgaggggttggtcatggacgcaaaggagaaagatgcaacattttgccagccatacaagagagaaggcaaccttatctggcccttgttgttagacaatgttaggccggacatgagaatcgcttgggaagaaccctttggtccagttttgcccgttattcggataaactcagtcgaagaaggaattcaccactgcaatgctagcaatttcggtctgcagggttgtgtgttcaccaaagacatcaacaaagcaatactgatcagtgatgcaatggaaaccggaaccgttcagattaactcagctcctgctcgtggaccggatcattttccgttccagggtattaaggacagcggaattggatcacaagggatcactaacagtattaacatgatgactaaagtgaagaccactgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="17779" stop="16224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17479" g_stop="17127" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17126" i_stop="16818" i_length="309">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16817" g_stop="16701" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="470" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16700" i_stop="16604" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16603" g_stop="16524" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="550" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E265475" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17479" e_stop="17127"/>
          <exon e_start="16817" e_stop="16701"/>
          <exon e_start="16603" e_stop="16524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGTTGGTGATGGAATCTGTTGCTGACATTCTTGTTGAGAAGGTAAATGCCAAAGTGGCAAAGTTAACCGTTGGGCCACCTGAAGATAATTGTGATATCACTCCAGTTGTCTCCGAGTCATCCGCAAATTTCATCGAGGGGTTGGTCATGGACGCAAAGGAGAAAGATGCAACATTTTGCCAGCCATACAAGAGAGAAGGCAACCTTATCTGGCCCTTGTTGTTAGACAATGTTAGGCCGGACATGAGAATCGCTTGGGAAGAACCCTTTGGTCCAGTTTTGCCCGTTATTCGGATAAACTCAGTCGAAGAAGGAATTCACCACTGCAATGCTAGCAATTTCGGTCTGCAGGTACTTCTTTCTCTCCATCTATCACAAGAAAAAAGTCACCCGTCTTTCGTTTGGAGGGATTAGAAAGAGATAATCTCCGCATAACCAATGTAACGTTTGATTCGCAGTATAAGAGAAATAATCCCATAGTAAATAATACTCGCATTACGTTTTACAAGAACCTAACATAACATTCAACATATAGGTTATTCACCCTATAATGATTCCGTCCTTTCATTATTATTCCCTGCATAAACAATTACTAAACGACATAACTAGCGCGTGAACCAAACGACTCCGTGGTATTTGACATTTGACTCTTAACTACAGGGTTGTGTGTTCACCAAAGACATCAACAAAGCAATACTGATCAGTGATGCAATGGAAACCGGAACCGTTCAGATTAACTCAGCTCCTGCTCGTGGACCGGATCATTTTCCGTTCCAGGTAATTAAACTCCAAATTCAACATCGCGAATTACATAATCTTGATTATCTTTGCGATAATTTCGTAGTAATTAAGGTGATTAATTTCGTTTTAACAGGGTATTAAGGACAGCGGAATTGGATCACAAGGGATCACTAACAGTATTAACATGATGACTAAAGTGAAGACCACTGTGAT</genome_strand>
        <mrna_strand>TCGTGTTGGTGATGGAATCTGTTGCTGACATTCTTGTTGAGAAGGTAAATGCCAAAGTGGCAAAGTTAACCGTTGGGCCACCTGAAGATAATTGTGATATCACTCCAGTTGTCTCCGAGTCATCCGCAAATTTCATCGAGGGGTTGGTCATGGACGCAAAGGAGAAAGATGCAACATTTTGCCAGCCATACAAGAGAGAAGGCAACCTTATCTGGCCCTTGTTGTTAGACAATGTTAGGCCGGACATGAGAATCGCTTGGGAAGAACCCTTTGGTCCAGTTTTGCCCGTTATTCGGATAAACTCAGTCGAAGAAGGAATTCACCACTGCAATGCTAGCAATTTCGGTCTGCAG.....................................................................................................................................................................................................................................................................................................................GGTTGTGTGTTCACCAAAGACATCAACAAAGCAATACTGATCAGTGATGCAATGGAAACCGGAACCGTTCAGATTAACTCAGCTCCTGCTCGTGGACCGGATCATTTTCCGTTCCAG.................................................................................................GGTATTAAGGACAGCGGAATTGGATCACAAGGGATCACTAACAGTATTAACATGATGACTAAAGTGAAGACCACTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E332098" ref_strand="+" ref_description="SGN-E332098 	[cTOD-16-G4]">
      <seq>aactgtataagcttcactggtggagacaccggtgttgcaatctcgaagaaagcaggaatggtccctctacagatggagctgggaggaaaggatgcttgtatcgtgctcgaggatgctgatttagatttggctgctggaaacattgtgaaaggaggattttcttacagtggtcaaagatgcacagctgttaaggtcgtgttggtgatggaatctgttgctgacattcttgttgagaaggtaaatgccaaagtggcaaagttaaccgttgggccacctgaagataattgtgatatcactccagttgtctccgagtcatccgcaaatttcatcgaggggttggtcatggacgcaaaggagaaagatgcaacattttgccagccatacaagagagaaggcaaccttatctggcccttgttgttagacaatgttaggccggacatgagaatcgcttgggaagaaccctttggtccagttttgcccgttattcggataaactcagtcgaagaaggaattcaccactgcaatgctagcaatttcggtctgcagggttgtgtgttcaccaaagacatcaacaaagcaatactgatcagtgatgcaatggaaaccggaaccgttcagattaactcagctcctgctcgtggaccggatcattttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="18280" stop="16408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17972" g_stop="17817" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="167" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17816" i_stop="17506" i_length="311">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17505" g_stop="17127" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="546" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17126" i_stop="16818" i_length="309">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16817" g_stop="16708" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="656" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E332098" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17972" e_stop="17817"/>
          <exon e_start="17505" e_stop="17127"/>
          <exon e_start="16817" e_stop="16708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACTGGTGGAGACACCGGTGTTGCAATCTCGAAGAAAGCAGGAATGGTCCCTCTACAGATGGAGCTGGGAGGAAAGGATGCTTGTATCGTGCTCGAGGATGCTGATTTAGATTTGGCTGCTGGAAACATTGTGAAAGGAGGATTTTCTTACAGGTGTGTGAATTTTATTTTCGTTATCAAAACAGAACATGCTAGTGCTTTTTCCTTAACAATCAAGTTGTCGGAACTGCATTGTATAAGGAAATCAAAACGAATGTATGCATTTTATGAAATCGACATATTAGTAGGCTTTTCTAATGATATAATGACTTCATGGATTGCCTGATTTACTATCACTAAACTTGATCACATTTCTGTTCGTGTGTTTGATGAACTTCTCTTTGATTCATTAATCATCAAAGATATGAATGCAATGTAGAGTTCATATTGCACGTATAATATGTCGATATCCTTGTTTATCACAGTGGTCAAAGATGCACAGCTGTTAAGGTCGTGTTGGTGATGGAATCTGTTGCTGACATTCTTGTTGAGAAGGTAAATGCCAAAGTGGCAAAGTTAACCGTTGGGCCACCTGAAGATAATTGTGATATCACTCCAGTTGTCTCCGAGTCATCCGCAAATTTCATCGAGGGGTTGGTCATGGACGCAAAGGAGAAAGATGCAACATTTTGCCAGCCATACAAGAGAGAAGGCAACCTTATCTGGCCCTTGTTGTTAGACAATGTTAGGCCGGACATGAGAATCGCTTGGGAAGAACCCTTTGGTCCAGTTTTGCCCGTTATTCGGATAAACTCAGTCGAAGAAGGAATTCACCACTGCAATGCTAGCAATTTCGGTCTGCAGGTACTTCTTTCTCTCCATCTATCACAAGAAAAAAGTCACCCGTCTTTCGTTTGGAGGGATTAGAAAGAGATAATCTCCGCATAACCAATGTAACGTTTGATTCGCAGTATAAGAGAAATAATCCCATAGTAAATAATACTCGCATTACGTTTTACAAGAACCTAACATAACATTCAACATATAGGTTATTCACCCTATAATGATTCCGTCCTTTCATTATTATTCCCTGCATAAACAATTACTAAACGACATAACTAGCGCGTGAACCAAACGACTCCGTGGTATTTGACATTTGACTCTTAACTACAGGGTTGTGTGTTCACCAAAGACATCAACAAAGCAATACTGATCAGTGATGCAATGGAAACCGGAACCGTTCAGATTAACTCAGCTCCTGCTCGTGGACCGGATCATTTTCC</genome_strand>
        <mrna_strand>CTTCACTGGTGGAGACACCGGTGTTGCAATCTCGAAGAAAGCAGGAATGGTCCCTCTACAGATGGAGCTGGGAGGAAAGGATGCTTGTATCGTGCTCGAGGATGCTGATTTAGATTTGGCTGCTGGAAACATTGTGAAAGGAGGATTTTCTTACAG.......................................................................................................................................................................................................................................................................................................................TGGTCAAAGATGCACAGCTGTTAAGGTCGTGTTGGTGATGGAATCTGTTGCTGACATTCTTGTTGAGAAGGTAAATGCCAAAGTGGCAAAGTTAACCGTTGGGCCACCTGAAGATAATTGTGATATCACTCCAGTTGTCTCCGAGTCATCCGCAAATTTCATCGAGGGGTTGGTCATGGACGCAAAGGAGAAAGATGCAACATTTTGCCAGCCATACAAGAGAGAAGGCAACCTTATCTGGCCCTTGTTGTTAGACAATGTTAGGCCGGACATGAGAATCGCTTGGGAAGAACCCTTTGGTCCAGTTTTGCCCGTTATTCGGATAAACTCAGTCGAAGAAGGAATTCACCACTGCAATGCTAGCAATTTCGGTCTGCAG.....................................................................................................................................................................................................................................................................................................................GGTTGTGTGTTCACCAAAGACATCAACAAAGCAATACTGATCAGTGATGCAATGGAAACCGGAACCGTTCAGATTAACTCAGCTCCTGCTCGTGGACCGGATCATTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E318823" ref_strand="+" ref_description="SGN-E318823 	[cTOB-11-P21]">
      <seq>accggtgttgcaatctcgaagaaagcaggaatggtccctctacagatggagctgggagaaaaggatgcttgtatcgtgctcgaggatgctgatttagatttggctgctggaaacattgtgaaaggaggattttcttacagtggtcaaagatgcacagctgttaaggtcgtgttggtgatggaatctgttgctgacattcttgttgagaaggtaaatgccaaagtggcaaagttaaccgttgggccacctgaagataattgtgatatcactccagttgtctccgagtcatccgcaaatttcatcgaggggttggtcatggacgcaaaggagaaagatgcaacattttgccagccatacaagagagaaggcaaccttatctggcccttgttgttagacaatgttaggccggacatgagaatcgcttgggaagaaccctttggtccagttttgcccgttattcggataaactcagtcgaagaaggaattcaccactgcaatgctagcaatttcggtctgcagggttgtgtgttcaccaaagacatcaacaaagcaatactgatcagtgatgcaatggaaaccggaaccgttcagattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="18256" stop="16440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17956" g_stop="17817" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17816" i_stop="17506" i_length="311">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17505" g_stop="17127" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="519" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17126" i_stop="16818" i_length="309">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16817" g_stop="16740" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="597" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E318823" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17956" e_stop="17817"/>
          <exon e_start="17505" e_stop="17127"/>
          <exon e_start="16817" e_stop="16740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGGTGTTGCAATCTCGAAGAAAGCAGGAATGGTCCCTCTACAGATGGAGCTGGGAGGAAAGGATGCTTGTATCGTGCTCGAGGATGCTGATTTAGATTTGGCTGCTGGAAACATTGTGAAAGGAGGATTTTCTTACAGGTGTGTGAATTTTATTTTCGTTATCAAAACAGAACATGCTAGTGCTTTTTCCTTAACAATCAAGTTGTCGGAACTGCATTGTATAAGGAAATCAAAACGAATGTATGCATTTTATGAAATCGACATATTAGTAGGCTTTTCTAATGATATAATGACTTCATGGATTGCCTGATTTACTATCACTAAACTTGATCACATTTCTGTTCGTGTGTTTGATGAACTTCTCTTTGATTCATTAATCATCAAAGATATGAATGCAATGTAGAGTTCATATTGCACGTATAATATGTCGATATCCTTGTTTATCACAGTGGTCAAAGATGCACAGCTGTTAAGGTCGTGTTGGTGATGGAATCTGTTGCTGACATTCTTGTTGAGAAGGTAAATGCCAAAGTGGCAAAGTTAACCGTTGGGCCACCTGAAGATAATTGTGATATCACTCCAGTTGTCTCCGAGTCATCCGCAAATTTCATCGAGGGGTTGGTCATGGACGCAAAGGAGAAAGATGCAACATTTTGCCAGCCATACAAGAGAGAAGGCAACCTTATCTGGCCCTTGTTGTTAGACAATGTTAGGCCGGACATGAGAATCGCTTGGGAAGAACCCTTTGGTCCAGTTTTGCCCGTTATTCGGATAAACTCAGTCGAAGAAGGAATTCACCACTGCAATGCTAGCAATTTCGGTCTGCAGGTACTTCTTTCTCTCCATCTATCACAAGAAAAAAGTCACCCGTCTTTCGTTTGGAGGGATTAGAAAGAGATAATCTCCGCATAACCAATGTAACGTTTGATTCGCAGTATAAGAGAAATAATCCCATAGTAAATAATACTCGCATTACGTTTTACAAGAACCTAACATAACATTCAACATATAGGTTATTCACCCTATAATGATTCCGTCCTTTCATTATTATTCCCTGCATAAACAATTACTAAACGACATAACTAGCGCGTGAACCAAACGACTCCGTGGTATTTGACATTTGACTCTTAACTACAGGGTTGTGTGTTCACCAAAGACATCAACAAAGCAATACTGATCAGTGATGCAATGGAAACCGGAACCGTTCAGATTAAC</genome_strand>
        <mrna_strand>ACCGGTGTTGCAATCTCGAAGAAAGCAGGAATGGTCCCTCTACAGATGGAGCTGGGAGAAAAGGATGCTTGTATCGTGCTCGAGGATGCTGATTTAGATTTGGCTGCTGGAAACATTGTGAAAGGAGGATTTTCTTACAG.......................................................................................................................................................................................................................................................................................................................TGGTCAAAGATGCACAGCTGTTAAGGTCGTGTTGGTGATGGAATCTGTTGCTGACATTCTTGTTGAGAAGGTAAATGCCAAAGTGGCAAAGTTAACCGTTGGGCCACCTGAAGATAATTGTGATATCACTCCAGTTGTCTCCGAGTCATCCGCAAATTTCATCGAGGGGTTGGTCATGGACGCAAAGGAGAAAGATGCAACATTTTGCCAGCCATACAAGAGAGAAGGCAACCTTATCTGGCCCTTGTTGTTAGACAATGTTAGGCCGGACATGAGAATCGCTTGGGAAGAACCCTTTGGTCCAGTTTTGCCCGTTATTCGGATAAACTCAGTCGAAGAAGGAATTCACCACTGCAATGCTAGCAATTTCGGTCTGCAG.....................................................................................................................................................................................................................................................................................................................GGTTGTGTGTTCACCAAAGACATCAACAAAGCAATACTGATCAGTGATGCAATGGAAACCGGAACCGTTCAGATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E315493" ref_strand="+" ref_description="SGN-E315493 	[cTOA-22-F22]">
      <seq>gaaactctttagtcctcaagcctccaactcagggtgctgtggctgccctgcatatggtgcattgcttccacttagctggattccctaaaggccttatcagttgtgtgaccggaaaaggttctgaaatcggagattttctcactatgcatcctggagtaaactgtataagcttcactggtggagacaccggtgttgcaatctcgaagaaagcaggaatggtccctctacagatggagctgggaggaaaggatgcttgtatcgtgctcgaggatgctgatttagatttggctgctggaaacattgtgaaaggaggattttcttacagtggtcaaagatgcacagctgttaaggtcgtgttggtgatggaatctgttgctgacattcttgttgagaaggtaaatgccaaagtggcaaagttaaccgttgggccacctgaagataattgtgatatcactccagttgtctccgagtcatccgcaaatttcatcgaggggttggtcatggacgcaaaggagaaagatgcaacattttgccagccatacaagagagaaggcaaccttatctggcccttgttgttagacaatgttaggccggacatgagaatcgcttgggaagaaccctttggtccagttttgcccgttattcggataaactcagtcgaagaaaggattcaccactgcaatgctagcaatttcggtctgcagggttgtgtgttcaccaaagacattcacaaagcaatactgatcagtgatgcaatggaaaccggaaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="19104" stop="16451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18804" g_stop="18773" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18772" i_stop="18444" i_length="329">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18443" g_stop="18307" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="169" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18306" i_stop="17973" i_length="334">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17972" g_stop="17817" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="325" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17816" i_stop="17506" i_length="311">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17505" g_stop="17127" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="704" r_length="379" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17126" i_stop="16818" i_length="309">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.935" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16817" g_stop="16751" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="771" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E315493" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18804" e_stop="18773"/>
          <exon e_start="18443" e_stop="18307"/>
          <exon e_start="17972" e_stop="17817"/>
          <exon e_start="17505" e_stop="17127"/>
          <exon e_start="16817" e_stop="16751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTCTTTAGTCCTCAAGCCTCCAACTCAGGTTACTTCACTAGAATTCGATCTCAAATTAGCTATATTATAATGCATCAAATTCTTACTATCGATTTATCAATAATATTCTATATGATGACGACACATCTCCTTTACCTTTTTTGTTACGACGTTCTTTACCATTAACCACCTTCTCAATTAGTTAAATTTTGTCCCTTGCAAAACTTCAAACATATTTTCAAGTAATTCACGTTTAAACACAACTTCAATTTCCAAATACCTGTTTTCAATTTAACTTCAGATGCTATGTTTTTTTCCCCAAGTATTACCAAATTCATGTTCAAACGTCTACTTACTTCGAGTGATCATTCACACCAGGGTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCTAAAGGCCTTATCAGTTGTGTGACCGGAAAAGGTTCTGAAATCGGAGATTTTCTCACTATGCATCCTGGAGTAAACTGTATAAGGTACTCCCTCTTTTTCAATTTGTTTGTTTGATTTTGACTTGAAACGGAGTTCTCTTTAATCTTGTGGTCTTAAAAATGCTTCGTGGAAAGCTGGAATTAAAGAGTTGTCAATAACGAAAAGAAATGTTCATTTTTAAACAGACTAAAAAGAAATGTAAGACAAACAAATTAAACAATCGGGAATATATTTTTATCTCATTGTTTCATTTGTTCGATTTATGTTTTTTCTTAGACTGCAACCGATATACTAAAAGAGTAAACAAGTTCCTTAGTCTCGTTCTTGATATTTGTGTGTCCACACATAACCATACACTCGTCTTTCTTGTTTTATCAGCTTCACTGGTGGAGACACCGGTGTTGCAATCTCGAAGAAAGCAGGAATGGTCCCTCTACAGATGGAGCTGGGAGGAAAGGATGCTTGTATCGTGCTCGAGGATGCTGATTTAGATTTGGCTGCTGGAAACATTGTGAAAGGAGGATTTTCTTACAGGTGTGTGAATTTTATTTTCGTTATCAAAACAGAACATGCTAGTGCTTTTTCCTTAACAATCAAGTTGTCGGAACTGCATTGTATAAGGAAATCAAAACGAATGTATGCATTTTATGAAATCGACATATTAGTAGGCTTTTCTAATGATATAATGACTTCATGGATTGCCTGATTTACTATCACTAAACTTGATCACATTTCTGTTCGTGTGTTTGATGAACTTCTCTTTGATTCATTAATCATCAAAGATATGAATGCAATGTAGAGTTCATATTGCACGTATAATATGTCGATATCCTTGTTTATCACAGTGGTCAAAGATGCACAGCTGTTAAGGTCGTGTTGGTGATGGAATCTGTTGCTGACATTCTTGTTGAGAAGGTAAATGCCAAAGTGGCAAAGTTAACCGTTGGGCCACCTGAAGATAATTGTGATATCACTCCAGTTGTCTCCGAGTCATCCGCAAATTTCATCGAGGGGTTGGTCATGGACGCAAAGGAGAAAGATGCAACATTTTGCCAGCCATACAAGAGAGAAGGCAACCTTATCTGGCCCTTGTTGTTAGACAATGTTAGGCCGGACATGAGAATCGCTTGGGAAGAACCCTTTGGTCCAGTTTTGCCCGTTATTCGGATAAACTCAGTCGAAGAAGGAATTCACCACTGCAATGCTAGCAATTTCGGTCTGCAGGTACTTCTTTCTCTCCATCTATCACAAGAAAAAAGTCACCCGTCTTTCGTTTGGAGGGATTAGAAAGAGATAATCTCCGCATAACCAATGTAACGTTTGATTCGCAGTATAAGAGAAATAATCCCATAGTAAATAATACTCGCATTACGTTTTACAAGAACCTAACATAACATTCAACATATAGGTTATTCACCCTATAATGATTCCGTCCTTTCATTATTATTCCCTGCATAAACAATTACTAAACGACATAACTAGCGCGTGAACCAAACGACTCCGTGGTATTTGACATTTGACTCTTAACTACAGGGTTGTGTGTTCACCAAAGACATCAACAAAGCAATACTGATCAGTGATGCAATGGAAACCGGAACCG</genome_strand>
        <mrna_strand>GAAACTCTTTAGTCCTCAAGCCTCCAACTCAG.........................................................................................................................................................................................................................................................................................................................................GGTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCTAAAGGCCTTATCAGTTGTGTGACCGGAAAAGGTTCTGAAATCGGAGATTTTCTCACTATGCATCCTGGAGTAAACTGTATAAG..............................................................................................................................................................................................................................................................................................................................................CTTCACTGGTGGAGACACCGGTGTTGCAATCTCGAAGAAAGCAGGAATGGTCCCTCTACAGATGGAGCTGGGAGGAAAGGATGCTTGTATCGTGCTCGAGGATGCTGATTTAGATTTGGCTGCTGGAAACATTGTGAAAGGAGGATTTTCTTACAG.......................................................................................................................................................................................................................................................................................................................TGGTCAAAGATGCACAGCTGTTAAGGTCGTGTTGGTGATGGAATCTGTTGCTGACATTCTTGTTGAGAAGGTAAATGCCAAAGTGGCAAAGTTAACCGTTGGGCCACCTGAAGATAATTGTGATATCACTCCAGTTGTCTCCGAGTCATCCGCAAATTTCATCGAGGGGTTGGTCATGGACGCAAAGGAGAAAGATGCAACATTTTGCCAGCCATACAAGAGAGAAGGCAACCTTATCTGGCCCTTGTTGTTAGACAATGTTAGGCCGGACATGAGAATCGCTTGGGAAGAACCCTTTGGTCCAGTTTTGCCCGTTATTCGGATAAACTCAGTCGAAGAAAGGATTCACCACTGCAATGCTAGCAATTTCGGTCTGCAG.....................................................................................................................................................................................................................................................................................................................GGTTGTGTGTTCACCAAAGACATTCACAAAGCAATACTGATCAGTGATGCAATGGAAACCGGAACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E290883" ref_strand="+" ref_description="SGN-E290883 	[cLET-10-J9]">
      <seq>tttttttttttctcagggtgctgtggctgccctgcatatggtgcattgcttccacttagctggattccctaaaggccttatcagttgtgtgaccggaaaaggttctgaaatcggagattttctcactatgcatcctggagtaaactgtataagcttcactggtggagacaccggtgttgcaatctcgaagaaagcaggaatggtccctctacagatggagctgggaggaaaggatgcttgtatcgtgctcgaggatgctgatttagatttggctgctggaaacattgtgaaaggaggattttcttacagtggtcaaagatgcacagctgttaaggtcgtgttggtgatggaatctgttgctgacattcttgttgagaaggtaaatgccaaagtggcaaagttaaccgttgggccacctgaagataattgtgatatcactccagttgtctccgagtcatccgcaaatttcatcgaggggttggtcatggacgcaaaggagaaagatgcaacattttgccagccatacaagagagaaggcaaccttatctggcccttgttgttagacaatgttaggccggacatgagaatcgcttgggaagaaccctttggtccagttttgcccgttattcggataaactcagtcgaagaaggaattcaccactgcaatgctagcaatttcggtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="18746" stop="16830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18443" g_stop="18307" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="153" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18306" i_stop="17973" i_length="334">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17972" g_stop="17817" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="309" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17816" i_stop="17506" i_length="311">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17505" g_stop="17130" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="685" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="13" polyA_stop="1"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E290883" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18443" e_stop="18307"/>
          <exon e_start="17972" e_stop="17817"/>
          <exon e_start="17505" e_stop="17130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCTAAAGGCCTTATCAGTTGTGTGACCGGAAAAGGTTCTGAAATCGGAGATTTTCTCACTATGCATCCTGGAGTAAACTGTATAAGGTACTCCCTCTTTTTCAATTTGTTTGTTTGATTTTGACTTGAAACGGAGTTCTCTTTAATCTTGTGGTCTTAAAAATGCTTCGTGGAAAGCTGGAATTAAAGAGTTGTCAATAACGAAAAGAAATGTTCATTTTTAAACAGACTAAAAAGAAATGTAAGACAAACAAATTAAACAATCGGGAATATATTTTTATCTCATTGTTTCATTTGTTCGATTTATGTTTTTTCTTAGACTGCAACCGATATACTAAAAGAGTAAACAAGTTCCTTAGTCTCGTTCTTGATATTTGTGTGTCCACACATAACCATACACTCGTCTTTCTTGTTTTATCAGCTTCACTGGTGGAGACACCGGTGTTGCAATCTCGAAGAAAGCAGGAATGGTCCCTCTACAGATGGAGCTGGGAGGAAAGGATGCTTGTATCGTGCTCGAGGATGCTGATTTAGATTTGGCTGCTGGAAACATTGTGAAAGGAGGATTTTCTTACAGGTGTGTGAATTTTATTTTCGTTATCAAAACAGAACATGCTAGTGCTTTTTCCTTAACAATCAAGTTGTCGGAACTGCATTGTATAAGGAAATCAAAACGAATGTATGCATTTTATGAAATCGACATATTAGTAGGCTTTTCTAATGATATAATGACTTCATGGATTGCCTGATTTACTATCACTAAACTTGATCACATTTCTGTTCGTGTGTTTGATGAACTTCTCTTTGATTCATTAATCATCAAAGATATGAATGCAATGTAGAGTTCATATTGCACGTATAATATGTCGATATCCTTGTTTATCACAGTGGTCAAAGATGCACAGCTGTTAAGGTCGTGTTGGTGATGGAATCTGTTGCTGACATTCTTGTTGAGAAGGTAAATGCCAAAGTGGCAAAGTTAACCGTTGGGCCACCTGAAGATAATTGTGATATCACTCCAGTTGTCTCCGAGTCATCCGCAAATTTCATCGAGGGGTTGGTCATGGACGCAAAGGAGAAAGATGCAACATTTTGCCAGCCATACAAGAGAGAAGGCAACCTTATCTGGCCCTTGTTGTTAGACAATGTTAGGCCGGACATGAGAATCGCTTGGGAAGAACCCTTTGGTCCAGTTTTGCCCGTTATTCGGATAAACTCAGTCGAAGAAGGAATTCACCACTGCAATGCTAGCAATTTCGGTCTG</genome_strand>
        <mrna_strand>GGTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCTAAAGGCCTTATCAGTTGTGTGACCGGAAAAGGTTCTGAAATCGGAGATTTTCTCACTATGCATCCTGGAGTAAACTGTATAAG..............................................................................................................................................................................................................................................................................................................................................CTTCACTGGTGGAGACACCGGTGTTGCAATCTCGAAGAAAGCAGGAATGGTCCCTCTACAGATGGAGCTGGGAGGAAAGGATGCTTGTATCGTGCTCGAGGATGCTGATTTAGATTTGGCTGCTGGAAACATTGTGAAAGGAGGATTTTCTTACAG.......................................................................................................................................................................................................................................................................................................................TGGTCAAAGATGCACAGCTGTTAAGGTCGTGTTGGTGATGGAATCTGTTGCTGACATTCTTGTTGAGAAGGTAAATGCCAAAGTGGCAAAGTTAACCGTTGGGCCACCTGAAGATAATTGTGATATCACTCCAGTTGTCTCCGAGTCATCCGCAAATTTCATCGAGGGGTTGGTCATGGACGCAAAGGAGAAAGATGCAACATTTTGCCAGCCATACAAGAGAGAAGGCAACCTTATCTGGCCCTTGTTGTTAGACAATGTTAGGCCGGACATGAGAATCGCTTGGGAAGAACCCTTTGGTCCAGTTTTGCCCGTTATTCGGATAAACTCAGTCGAAGAAGGAATTCACCACTGCAATGCTAGCAATTTCGGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E320570" ref_strand="+" ref_description="SGN-E320570 	[cTOB-22-B15]">
      <seq>ctgaagaaggagttagaattctaggggagggtaagttcttggtatctgatagtttccctggaaatgaaaggaccaaatactgtctaacatccaagataccgttgggtgtgattctggcgattcctcctttcaactatccggtcaatcttgccgtctccaagattgctcctgcactgattgctggaaactctttagtcctcaagcctccaactcagggtgctgtggctgccctgcatatggtgcattgcttccacttagctggattccctaaaggccttatcagttgtgtgaccggagaaggttctgaaatcggagattttctcactatgcatcctggagtaaactgtataagcttcactggtggagacaccggtgttgcaatctcgaagaaagcaggaatggtccctctacagatggagctgggaggaaaggatgcttgtatcgtgctcgaggatgctgatttagatttggctgctggaaacattgtgaaaggaggattttcttacagtggtcaaagatgcacagctgttaaggtcgtgttggtgatggaatctgttgctgacattcttgttgagaaggtaaatgccaaagtggcaaagttaaccgttgggccacctgaagataattgtgatatcactccagttgtctccgagtcatccgcaaatttcatcgaggggttggtcatggacgcaaaggagaaagatgcaacattttgccagccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20157" stop="16991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19857" g_stop="19763" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19762" i_stop="18893" i_length="870">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18892" g_stop="18773" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="215" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18772" i_stop="18444" i_length="329">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18443" g_stop="18307" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="352" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18306" i_stop="17973" i_length="334">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17972" g_stop="17817" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="508" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17816" i_stop="17506" i_length="311">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17505" g_stop="17291" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="723" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E320570" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19857" e_stop="19763"/>
          <exon e_start="18892" e_stop="18773"/>
          <exon e_start="18443" e_stop="18307"/>
          <exon e_start="17972" e_stop="17817"/>
          <exon e_start="17505" e_stop="17291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAGGTACATTTCTTGACTAATCGATTTAATATTGCTATATTATAATGTCATTTAGTATAAAGTATCGTCGGTTTGCGTTGATTGTCAAAAGATGAAGATATTTTAAGGACTTTGTCTACAACTTAACTGGTTTCATTTCATTGGATGACAAAGCATGTTGTCTTTATACGTATATCAAATGTTGGATCGATGAGCTTGGATTACGACTTTGTGTCACCCATCGGTAATGTTGTTGCAGTGGTATTACATATAGCCAGGACATTTAATTTGACTTAGGCGAATAAAATAATTCCGGAAAACCAATTAAGCTCTTACAAGTTACGAAAAGAAGAAGAATATAACTAAGACGGCAATGTGAGTTTTCTTTTCTAAGTATTAAATAAAGAAGTCAAGGAAGAGATGTTATGAATTGACAGGATGTAACCACTGTCCTATAGAGAATATGGTTAGGGAATATTACTATACTTATTTGTGTGGTTATAATCATTAGATATAGAATCGTATCATTTTTTTCGGAACAAACTAGAAAGGAAAGTAAAGACATCACCTATAAAGACGCCCCCTCAAGACAAGTGTTTTTTGTTTGTCTATTAAAAGTAAGGCAACATAAACCGATTTCAAGTCAGACCGGTTGTGAGAACATTTTTTCCCCTGAATCTGTATTAGTCCAAAGATAAATCGAAAAAAAAATAGATGAAAATGTAGAAACTCATAACATCAGCCTATAACCACTCATTGTCTCATATTATTTGTAAACTTTCCATTATCAGTAGCAAAATACAGATAGGAACTCACATTTTATACTTAAAATGTTGATATTAAGTTTATCGGTAATATACTGATTATTATAACCTAAACGTCCGTGGAGTACAGATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTTCAACTATCCGGTCAATCTTGCCGTCTCCAAGATTGCTCCTGCACTGATTGCTGGAAACTCTTTAGTCCTCAAGCCTCCAACTCAGGTTACTTCACTAGAATTCGATCTCAAATTAGCTATATTATAATGCATCAAATTCTTACTATCGATTTATCAATAATATTCTATATGATGACGACACATCTCCTTTACCTTTTTTGTTACGACGTTCTTTACCATTAACCACCTTCTCAATTAGTTAAATTTTGTCCCTTGCAAAACTTCAAACATATTTTCAAGTAATTCACGTTTAAACACAACTTCAATTTCCAAATACCTGTTTTCAATTTAACTTCAGATGCTATGTTTTTTTCCCCAAGTATTACCAAATTCATGTTCAAACGTCTACTTACTTCGAGTGATCATTCACACCAGGGTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCTAAAGGCCTTATCAGTTGTGTGACCGGAAAAGGTTCTGAAATCGGAGATTTTCTCACTATGCATCCTGGAGTAAACTGTATAAGGTACTCCCTCTTTTTCAATTTGTTTGTTTGATTTTGACTTGAAACGGAGTTCTCTTTAATCTTGTGGTCTTAAAAATGCTTCGTGGAAAGCTGGAATTAAAGAGTTGTCAATAACGAAAAGAAATGTTCATTTTTAAACAGACTAAAAAGAAATGTAAGACAAACAAATTAAACAATCGGGAATATATTTTTATCTCATTGTTTCATTTGTTCGATTTATGTTTTTTCTTAGACTGCAACCGATATACTAAAAGAGTAAACAAGTTCCTTAGTCTCGTTCTTGATATTTGTGTGTCCACACATAACCATACACTCGTCTTTCTTGTTTTATCAGCTTCACTGGTGGAGACACCGGTGTTGCAATCTCGAAGAAAGCAGGAATGGTCCCTCTACAGATGGAGCTGGGAGGAAAGGATGCTTGTATCGTGCTCGAGGATGCTGATTTAGATTTGGCTGCTGGAAACATTGTGAAAGGAGGATTTTCTTACAGGTGTGTGAATTTTATTTTCGTTATCAAAACAGAACATGCTAGTGCTTTTTCCTTAACAATCAAGTTGTCGGAACTGCATTGTATAAGGAAATCAAAACGAATGTATGCATTTTATGAAATCGACATATTAGTAGGCTTTTCTAATGATATAATGACTTCATGGATTGCCTGATTTACTATCACTAAACTTGATCACATTTCTGTTCGTGTGTTTGATGAACTTCTCTTTGATTCATTAATCATCAAAGATATGAATGCAATGTAGAGTTCATATTGCACGTATAATATGTCGATATCCTTGTTTATCACAGTGGTCAAAGATGCACAGCTGTTAAGGTCGTGTTGGTGATGGAATCTGTTGCTGACATTCTTGTTGAGAAGGTAAATGCCAAAGTGGCAAAGTTAACCGTTGGGCCACCTGAAGATAATTGTGATATCACTCCAGTTGTCTCCGAGTCATCCGCAAATTTCATCGAGGGGTTGGTCATGGACGCAAAGGAGAAAGATGCAACATTTTGCCAGCCAT</genome_strand>
        <mrna_strand>CTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTTCAACTATCCGGTCAATCTTGCCGTCTCCAAGATTGCTCCTGCACTGATTGCTGGAAACTCTTTAGTCCTCAAGCCTCCAACTCAG.........................................................................................................................................................................................................................................................................................................................................GGTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCTAAAGGCCTTATCAGTTGTGTGACCGGAGAAGGTTCTGAAATCGGAGATTTTCTCACTATGCATCCTGGAGTAAACTGTATAAG..............................................................................................................................................................................................................................................................................................................................................CTTCACTGGTGGAGACACCGGTGTTGCAATCTCGAAGAAAGCAGGAATGGTCCCTCTACAGATGGAGCTGGGAGGAAAGGATGCTTGTATCGTGCTCGAGGATGCTGATTTAGATTTGGCTGCTGGAAACATTGTGAAAGGAGGATTTTCTTACAG.......................................................................................................................................................................................................................................................................................................................TGGTCAAAGATGCACAGCTGTTAAGGTCGTGTTGGTGATGGAATCTGTTGCTGACATTCTTGTTGAGAAGGTAAATGCCAAAGTGGCAAAGTTAACCGTTGGGCCACCTGAAGATAATTGTGATATCACTCCAGTTGTCTCCGAGTCATCCGCAAATTTCATCGAGGGGTTGGTCATGGACGCAAAGGAGAAAGATGCAACATTTTGCCAGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E216510" ref_strand="+" ref_description="SGN-E216510 	[cLEL-1-A14]">
      <seq>taagttcttggtatctgatagtttccctggaaatgaaaggaccaaatactgtctaacatccaagataccgttgggtgtgattctggcgattcctcctttcaactatccggtcaatcttgccgtctccaagattgctcctgcactgattgctggaaactctttagtcctcaagcctccaactcagggtgctgtggctgccctgcatatggtgcattgcttccacttagctggattccctaaaggccttatcagttgtgtgaccggaaaaggttctgaaatcggagattttctcactatgcatcctggagtaaactgtataagcttcactggtggagacaccggtgttgcaatctcgaagaaagcaggaatggtccctctacagatggagctgggaggaaaggatgcttgtatcgtgctcgaggatgctgatttagatttggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20126" stop="17552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19826" g_stop="19763" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19762" i_stop="18893" i_length="870">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18892" g_stop="18773" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="184" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18772" i_stop="18444" i_length="329">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18443" g_stop="18307" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="321" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18306" i_stop="17973" i_length="334">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17972" g_stop="17852" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="442" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E216510" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19826" e_stop="19763"/>
          <exon e_start="18892" e_stop="18773"/>
          <exon e_start="18443" e_stop="18307"/>
          <exon e_start="17972" e_stop="17852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAGGTACATTTCTTGACTAATCGATTTAATATTGCTATATTATAATGTCATTTAGTATAAAGTATCGTCGGTTTGCGTTGATTGTCAAAAGATGAAGATATTTTAAGGACTTTGTCTACAACTTAACTGGTTTCATTTCATTGGATGACAAAGCATGTTGTCTTTATACGTATATCAAATGTTGGATCGATGAGCTTGGATTACGACTTTGTGTCACCCATCGGTAATGTTGTTGCAGTGGTATTACATATAGCCAGGACATTTAATTTGACTTAGGCGAATAAAATAATTCCGGAAAACCAATTAAGCTCTTACAAGTTACGAAAAGAAGAAGAATATAACTAAGACGGCAATGTGAGTTTTCTTTTCTAAGTATTAAATAAAGAAGTCAAGGAAGAGATGTTATGAATTGACAGGATGTAACCACTGTCCTATAGAGAATATGGTTAGGGAATATTACTATACTTATTTGTGTGGTTATAATCATTAGATATAGAATCGTATCATTTTTTTCGGAACAAACTAGAAAGGAAAGTAAAGACATCACCTATAAAGACGCCCCCTCAAGACAAGTGTTTTTTGTTTGTCTATTAAAAGTAAGGCAACATAAACCGATTTCAAGTCAGACCGGTTGTGAGAACATTTTTTCCCCTGAATCTGTATTAGTCCAAAGATAAATCGAAAAAAAAATAGATGAAAATGTAGAAACTCATAACATCAGCCTATAACCACTCATTGTCTCATATTATTTGTAAACTTTCCATTATCAGTAGCAAAATACAGATAGGAACTCACATTTTATACTTAAAATGTTGATATTAAGTTTATCGGTAATATACTGATTATTATAACCTAAACGTCCGTGGAGTACAGATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTTCAACTATCCGGTCAATCTTGCCGTCTCCAAGATTGCTCCTGCACTGATTGCTGGAAACTCTTTAGTCCTCAAGCCTCCAACTCAGGTTACTTCACTAGAATTCGATCTCAAATTAGCTATATTATAATGCATCAAATTCTTACTATCGATTTATCAATAATATTCTATATGATGACGACACATCTCCTTTACCTTTTTTGTTACGACGTTCTTTACCATTAACCACCTTCTCAATTAGTTAAATTTTGTCCCTTGCAAAACTTCAAACATATTTTCAAGTAATTCACGTTTAAACACAACTTCAATTTCCAAATACCTGTTTTCAATTTAACTTCAGATGCTATGTTTTTTTCCCCAAGTATTACCAAATTCATGTTCAAACGTCTACTTACTTCGAGTGATCATTCACACCAGGGTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCTAAAGGCCTTATCAGTTGTGTGACCGGAAAAGGTTCTGAAATCGGAGATTTTCTCACTATGCATCCTGGAGTAAACTGTATAAGGTACTCCCTCTTTTTCAATTTGTTTGTTTGATTTTGACTTGAAACGGAGTTCTCTTTAATCTTGTGGTCTTAAAAATGCTTCGTGGAAAGCTGGAATTAAAGAGTTGTCAATAACGAAAAGAAATGTTCATTTTTAAACAGACTAAAAAGAAATGTAAGACAAACAAATTAAACAATCGGGAATATATTTTTATCTCATTGTTTCATTTGTTCGATTTATGTTTTTTCTTAGACTGCAACCGATATACTAAAAGAGTAAACAAGTTCCTTAGTCTCGTTCTTGATATTTGTGTGTCCACACATAACCATACACTCGTCTTTCTTGTTTTATCAGCTTCACTGGTGGAGACACCGGTGTTGCAATCTCGAAGAAAGCAGGAATGGTCCCTCTACAGATGGAGCTGGGAGGAAAGGATGCTTGTATCGTGCTCGAGGATGCTGATTTAGATTTGGCT</genome_strand>
        <mrna_strand>TAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTTCAACTATCCGGTCAATCTTGCCGTCTCCAAGATTGCTCCTGCACTGATTGCTGGAAACTCTTTAGTCCTCAAGCCTCCAACTCAG.........................................................................................................................................................................................................................................................................................................................................GGTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCTAAAGGCCTTATCAGTTGTGTGACCGGAAAAGGTTCTGAAATCGGAGATTTTCTCACTATGCATCCTGGAGTAAACTGTATAAG..............................................................................................................................................................................................................................................................................................................................................CTTCACTGGTGGAGACACCGGTGTTGCAATCTCGAAGAAAGCAGGAATGGTCCCTCTACAGATGGAGCTGGGAGGAAAGGATGCTTGTATCGTGCTCGAGGATGCTGATTTAGATTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E290813" ref_strand="+" ref_description="SGN-E290813 	[cLET-10-C4]">
      <seq>tttttttttttctcagggtgctgtggctgccctgcatatggtgcattgcttccacttagctggattccctaaaggccttatcagttgtgtgaccggaaaaggttctgaaatcggagattttctcactatgcatcctggagtaaactgtataagcttcactggtggagacaccggtgttgcaatctcgaagaaagcaggaatggtccctctacagatggagctgggaggaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="18746" stop="17592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18443" g_stop="18307" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="153" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18306" i_stop="17973" i_length="334">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17972" g_stop="17892" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="234" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="13" polyA_stop="1"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E290813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>218</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18443" e_stop="18307"/>
          <exon e_start="17972" e_stop="17892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCTAAAGGCCTTATCAGTTGTGTGACCGGAAAAGGTTCTGAAATCGGAGATTTTCTCACTATGCATCCTGGAGTAAACTGTATAAGGTACTCCCTCTTTTTCAATTTGTTTGTTTGATTTTGACTTGAAACGGAGTTCTCTTTAATCTTGTGGTCTTAAAAATGCTTCGTGGAAAGCTGGAATTAAAGAGTTGTCAATAACGAAAAGAAATGTTCATTTTTAAACAGACTAAAAAGAAATGTAAGACAAACAAATTAAACAATCGGGAATATATTTTTATCTCATTGTTTCATTTGTTCGATTTATGTTTTTTCTTAGACTGCAACCGATATACTAAAAGAGTAAACAAGTTCCTTAGTCTCGTTCTTGATATTTGTGTGTCCACACATAACCATACACTCGTCTTTCTTGTTTTATCAGCTTCACTGGTGGAGACACCGGTGTTGCAATCTCGAAGAAAGCAGGAATGGTCCCTCTACAGATGGAGCTGGGAGGAAAGGA</genome_strand>
        <mrna_strand>GGTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCTAAAGGCCTTATCAGTTGTGTGACCGGAAAAGGTTCTGAAATCGGAGATTTTCTCACTATGCATCCTGGAGTAAACTGTATAAG..............................................................................................................................................................................................................................................................................................................................................CTTCACTGGTGGAGACACCGGTGTTGCAATCTCGAAGAAAGCAGGAATGGTCCCTCTACAGATGGAGCTGGGAGGAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E267105" ref_strand="+" ref_description="SGN-E267105 	[cLEI-4-J17]">
      <seq>tgagatctggtgatttggtttcttacactgctgaagaaggagttagaattctaggggagggtaagttcttggtatctgatagtttccctggaaatgaaaggaccaaatactgtctaacatccaagataccgttgggtgtgattctggcgattcctcctttcaactatccggtcaatcttgccgtctccaagattgctcctgcactgattgctggaaactctttagtcctcaagcctccaactcagggtgctgtggctgccctgcatatggtgcattgcttccacttagctggattccctaaaggccttatcagttgtgtgaccggaaaaggttctgaaatcggagattttctcactatgcatcctggagtaaactgtataagcttcactggtggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20187" stop="17659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19887" g_stop="19763" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19762" i_stop="18893" i_length="870">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18892" g_stop="18773" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="245" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18772" i_stop="18444" i_length="329">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18443" g_stop="18307" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="382" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18306" i_stop="17973" i_length="334">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17972" g_stop="17959" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="396" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E267105" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19887" e_stop="19763"/>
          <exon e_start="18892" e_stop="18773"/>
          <exon e_start="18443" e_stop="18307"/>
          <exon e_start="17972" e_stop="17959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAGGTACATTTCTTGACTAATCGATTTAATATTGCTATATTATAATGTCATTTAGTATAAAGTATCGTCGGTTTGCGTTGATTGTCAAAAGATGAAGATATTTTAAGGACTTTGTCTACAACTTAACTGGTTTCATTTCATTGGATGACAAAGCATGTTGTCTTTATACGTATATCAAATGTTGGATCGATGAGCTTGGATTACGACTTTGTGTCACCCATCGGTAATGTTGTTGCAGTGGTATTACATATAGCCAGGACATTTAATTTGACTTAGGCGAATAAAATAATTCCGGAAAACCAATTAAGCTCTTACAAGTTACGAAAAGAAGAAGAATATAACTAAGACGGCAATGTGAGTTTTCTTTTCTAAGTATTAAATAAAGAAGTCAAGGAAGAGATGTTATGAATTGACAGGATGTAACCACTGTCCTATAGAGAATATGGTTAGGGAATATTACTATACTTATTTGTGTGGTTATAATCATTAGATATAGAATCGTATCATTTTTTTCGGAACAAACTAGAAAGGAAAGTAAAGACATCACCTATAAAGACGCCCCCTCAAGACAAGTGTTTTTTGTTTGTCTATTAAAAGTAAGGCAACATAAACCGATTTCAAGTCAGACCGGTTGTGAGAACATTTTTTCCCCTGAATCTGTATTAGTCCAAAGATAAATCGAAAAAAAAATAGATGAAAATGTAGAAACTCATAACATCAGCCTATAACCACTCATTGTCTCATATTATTTGTAAACTTTCCATTATCAGTAGCAAAATACAGATAGGAACTCACATTTTATACTTAAAATGTTGATATTAAGTTTATCGGTAATATACTGATTATTATAACCTAAACGTCCGTGGAGTACAGATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTTCAACTATCCGGTCAATCTTGCCGTCTCCAAGATTGCTCCTGCACTGATTGCTGGAAACTCTTTAGTCCTCAAGCCTCCAACTCAGGTTACTTCACTAGAATTCGATCTCAAATTAGCTATATTATAATGCATCAAATTCTTACTATCGATTTATCAATAATATTCTATATGATGACGACACATCTCCTTTACCTTTTTTGTTACGACGTTCTTTACCATTAACCACCTTCTCAATTAGTTAAATTTTGTCCCTTGCAAAACTTCAAACATATTTTCAAGTAATTCACGTTTAAACACAACTTCAATTTCCAAATACCTGTTTTCAATTTAACTTCAGATGCTATGTTTTTTTCCCCAAGTATTACCAAATTCATGTTCAAACGTCTACTTACTTCGAGTGATCATTCACACCAGGGTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCTAAAGGCCTTATCAGTTGTGTGACCGGAAAAGGTTCTGAAATCGGAGATTTTCTCACTATGCATCCTGGAGTAAACTGTATAAGGTACTCCCTCTTTTTCAATTTGTTTGTTTGATTTTGACTTGAAACGGAGTTCTCTTTAATCTTGTGGTCTTAAAAATGCTTCGTGGAAAGCTGGAATTAAAGAGTTGTCAATAACGAAAAGAAATGTTCATTTTTAAACAGACTAAAAAGAAATGTAAGACAAACAAATTAAACAATCGGGAATATATTTTTATCTCATTGTTTCATTTGTTCGATTTATGTTTTTTCTTAGACTGCAACCGATATACTAAAAGAGTAAACAAGTTCCTTAGTCTCGTTCTTGATATTTGTGTGTCCACACATAACCATACACTCGTCTTTCTTGTTTTATCAGCTTCACTGGTGGAG</genome_strand>
        <mrna_strand>TGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTTCAACTATCCGGTCAATCTTGCCGTCTCCAAGATTGCTCCTGCACTGATTGCTGGAAACTCTTTAGTCCTCAAGCCTCCAACTCAG.........................................................................................................................................................................................................................................................................................................................................GGTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCTAAAGGCCTTATCAGTTGTGTGACCGGAAAAGGTTCTGAAATCGGAGATTTTCTCACTATGCATCCTGGAGTAAACTGTATAAG..............................................................................................................................................................................................................................................................................................................................................CTTCACTGGTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E328468" ref_strand="+" ref_description="SGN-E328468 	[cTOC-21-L24]">
      <seq>aaaaaaataataaaaatccaccattttctcttcttatcctttttttttttaattattgtgaaaaaaaatctaaaatttggtgtaaaaatggctggaaatggagtatttgcagaaataattgatggagaagtgtacaaatattattgtgaaggagaatggaaaaaatcagcttctggaaaatctgttgctattattaatcctactacaagaaagacacaatacaaagttcaagcatgtacacaagaagaggtgaacaaagtaatggaaatagcaaaagcagcacaaaaatcatgggctaaaacaccactatggaaaagagcagagttacttcataaggcagctgcaattttgaaagaacacaaagcccctattgctgaatgccttgttaaagaaattgcaaaaccagctaaagatgctgtcaccgaggttgtgagatctggtgatttggtttcttacactgctgaagaaggagttagaattctaggggagggtaagttcttggtatctgatagtttccctggaaatgaaaggaccaaatactgtctaacatccaagataccgttgggtgtgattctggcgattcctcctttcaactatccggtcaatcttgccgtctccaagattgctcctgcactgattgctggaaactctttagtcctcaagcctccaactcaggntgctgtggctgccctgcatatggtgcattgcttccacttagctggattccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21497" stop="18090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21298" g_stop="21122" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="232" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21121" i_stop="20495" i_length="627">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20494" g_stop="20301" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="426" r_length="194" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20300" i_stop="19892" i_length="409">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19891" g_stop="19763" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="555" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19762" i_stop="18893" i_length="870">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18892" g_stop="18773" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="675" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18772" i_stop="18444" i_length="329">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18443" g_stop="18390" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="729" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="50" polyA_stop="39"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E328468" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21298" e_stop="21122"/>
          <exon e_start="20494" e_stop="20301"/>
          <exon e_start="19891" e_stop="19763"/>
          <exon e_start="18892" e_stop="18773"/>
          <exon e_start="18443" e_stop="18390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAGGTATGTTATTTTTAGAAAAATAAAAATTATCAAGATTGAAAATTTTGTGTGTGTAGAGTAAATATATCAAGATTGATGTTTGTTTGAGATTTTAATGGTTGAAAGGGTAGCGTTTGCGTAACTGGTAAAGTTATTACCACGTAACTGTGACATGGATCAAGTTGCGTACAATAGACTCATGTAGTGTGGTCTTTTCGTGTATCAGACTGTTTCATGTTCTAGGACAGAGACAAGATTTTAACTTTATGGATTCTGAATAGAAAAATGTCATGATGTATAATGAATTTTCTGTCATTTGTTTCTAAGGTTCCTTGAATTTTGTGGATAGTGCTCTGGAATTTGTTGTACGGGTGACAGAATCAAGATTTCAACTTTATGAATTTTGTATTTTAGAACAATAATTACACTATCGTCAGTGTAGTTTAACCTATTATAACATGTTAGTTAACATTTTATTGAGTCGTAGGTAAATGTCATTATGTAAAATTACCGAGTCATGTGAACTCTTTAATAACACATTGATAAAATTTCTTGATTTCGCATCGAGGTACTTTTGCTTGTATTGTATTATTTGGTTTACGTACCAGAACTGATAACATTCGAGATTTGTGAATGTNTATTGTTCAGCATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGGTTAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAGGTACGCTGAATGAGTCCTATGTTGCTCAGACTAATCTAGAAATGTTGCCTGGTGTGTGTCCGATCCTCCAAAAGTAGTGCATTTTTAGAGACTCTGAGCAACATATACGTTGACCTATGTTACTCCGACTCTCCAAAAATACCTCTGGATATGTGTCGGATAATCCTCCAAAAGTAGTGCATTTTTGGAGGATCTAACACAGGTGCAACAACGTTTTTGGAGAGTCCAAGCAACATAGATGCTGATGGTGTAAAAATCTTGGATGTATTAACTAGTGATAGCATGTTGGTAATCATGTTTGTCTGATATTATTTGTCAGTACATAGAACTTGAAACTCGTAAAATATTGTATGAATTCTGAAAAAAGTTAATTGCTTTATCGGCTGATAACGTTGTGAATTTGATGAAGGTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAGGTACATTTCTTGACTAATCGATTTAATATTGCTATATTATAATGTCATTTAGTATAAAGTATCGTCGGTTTGCGTTGATTGTCAAAAGATGAAGATATTTTAAGGACTTTGTCTACAACTTAACTGGTTTCATTTCATTGGATGACAAAGCATGTTGTCTTTATACGTATATCAAATGTTGGATCGATGAGCTTGGATTACGACTTTGTGTCACCCATCGGTAATGTTGTTGCAGTGGTATTACATATAGCCAGGACATTTAATTTGACTTAGGCGAATAAAATAATTCCGGAAAACCAATTAAGCTCTTACAAGTTACGAAAAGAAGAAGAATATAACTAAGACGGCAATGTGAGTTTTCTTTTCTAAGTATTAAATAAAGAAGTCAAGGAAGAGATGTTATGAATTGACAGGATGTAACCACTGTCCTATAGAGAATATGGTTAGGGAATATTACTATACTTATTTGTGTGGTTATAATCATTAGATATAGAATCGTATCATTTTTTTCGGAACAAACTAGAAAGGAAAGTAAAGACATCACCTATAAAGACGCCCCCTCAAGACAAGTGTTTTTTGTTTGTCTATTAAAAGTAAGGCAACATAAACCGATTTCAAGTCAGACCGGTTGTGAGAACATTTTTTCCCCTGAATCTGTATTAGTCCAAAGATAAATCGAAAAAAAAATAGATGAAAATGTAGAAACTCATAACATCAGCCTATAACCACTCATTGTCTCATATTATTTGTAAACTTTCCATTATCAGTAGCAAAATACAGATAGGAACTCACATTTTATACTTAAAATGTTGATATTAAGTTTATCGGTAATATACTGATTATTATAACCTAAACGTCCGTGGAGTACAGATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTTCAACTATCCGGTCAATCTTGCCGTCTCCAAGATTGCTCCTGCACTGATTGCTGGAAACTCTTTAGTCCTCAAGCCTCCAACTCAGGTTACTTCACTAGAATTCGATCTCAAATTAGCTATATTATAATGCATCAAATTCTTACTATCGATTTATCAATAATATTCTATATGATGACGACACATCTCCTTTACCTTTTTTGTTACGACGTTCTTTACCATTAACCACCTTCTCAATTAGTTAAATTTTGTCCCTTGCAAAACTTCAAACATATTTTCAAGTAATTCACGTTTAAACACAACTTCAATTTCCAAATACCTGTTTTCAATTTAACTTCAGATGCTATGTTTTTTTCCCCAAGTATTACCAAATTCATGTTCAAACGTCTACTTACTTCGAGTGATCATTCACACCAGGGTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCT</genome_strand>
        <mrna_strand>TTGTGAAAAAAAATCTAAAATTTGGTGTAAAAATGGCTGGAAATGGAGTATTTGCAGAAATAATTGATGGAGAAGTGTACAAATATTATTGTGAAGGAGAATGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGTTAAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTTCAACTATCCGGTCAATCTTGCCGTCTCCAAGATTGCTCCTGCACTGATTGCTGGAAACTCTTTAGTCCTCAAGCCTCCAACTCAG.........................................................................................................................................................................................................................................................................................................................................GNTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E328089" ref_strand="+" ref_description="SGN-E328089 	[cTOC-22-H9]">
      <seq>aaaaaaataataaaaatccaccattttctcttcttatcctttttttttttaattattgtgaaaaaaaatctaaaatttggtgtaaaaatggctggaaatggagtatttgcagaaataattgatggagaagtgtacaaatattattgtgaaggagaatggaaaaaatcagcttctggaaaatctgttgctattattaatcctactacaagaaagacacaatacaaagttcaagcatgtacacaagaagaggtgaacaaagtaatggaaatagcaaaagcagcacaaaaatcatgggctaaaacaccactatggaaaagagcagagttacttcataaggcagctgcaattttgaaagaacacaaagcccctattgctgaatgccttgttaaagaaattgcaaaaccagctaaagatgctgtcaccgaggttgtgagatctggtgatttggtttcttacactgctgaagaaggagttagaattctaggggagggtaagttcttggtatctgatagtttccctggaaatgaaaggaccaaatactgtctaacatccaagataccgttgggtgtgattctggcgattcctcctttcaactatccggtcaatcttgccgtctccaagattgctcctgcactgattgctggaaactctttagtcctcaagcctccaactcaggntgctgtggctgccctgcatatggtgcattgcttccacttagctggattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21497" stop="18092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21298" g_stop="21122" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="232" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21121" i_stop="20495" i_length="627">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20494" g_stop="20301" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="426" r_length="194" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20300" i_stop="19892" i_length="409">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19891" g_stop="19763" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="555" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19762" i_stop="18893" i_length="870">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18892" g_stop="18773" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="675" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18772" i_stop="18444" i_length="329">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18443" g_stop="18392" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="727" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="50" polyA_stop="39"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E328089" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21298" e_stop="21122"/>
          <exon e_start="20494" e_stop="20301"/>
          <exon e_start="19891" e_stop="19763"/>
          <exon e_start="18892" e_stop="18773"/>
          <exon e_start="18443" e_stop="18392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAGGTATGTTATTTTTAGAAAAATAAAAATTATCAAGATTGAAAATTTTGTGTGTGTAGAGTAAATATATCAAGATTGATGTTTGTTTGAGATTTTAATGGTTGAAAGGGTAGCGTTTGCGTAACTGGTAAAGTTATTACCACGTAACTGTGACATGGATCAAGTTGCGTACAATAGACTCATGTAGTGTGGTCTTTTCGTGTATCAGACTGTTTCATGTTCTAGGACAGAGACAAGATTTTAACTTTATGGATTCTGAATAGAAAAATGTCATGATGTATAATGAATTTTCTGTCATTTGTTTCTAAGGTTCCTTGAATTTTGTGGATAGTGCTCTGGAATTTGTTGTACGGGTGACAGAATCAAGATTTCAACTTTATGAATTTTGTATTTTAGAACAATAATTACACTATCGTCAGTGTAGTTTAACCTATTATAACATGTTAGTTAACATTTTATTGAGTCGTAGGTAAATGTCATTATGTAAAATTACCGAGTCATGTGAACTCTTTAATAACACATTGATAAAATTTCTTGATTTCGCATCGAGGTACTTTTGCTTGTATTGTATTATTTGGTTTACGTACCAGAACTGATAACATTCGAGATTTGTGAATGTNTATTGTTCAGCATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGGTTAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAGGTACGCTGAATGAGTCCTATGTTGCTCAGACTAATCTAGAAATGTTGCCTGGTGTGTGTCCGATCCTCCAAAAGTAGTGCATTTTTAGAGACTCTGAGCAACATATACGTTGACCTATGTTACTCCGACTCTCCAAAAATACCTCTGGATATGTGTCGGATAATCCTCCAAAAGTAGTGCATTTTTGGAGGATCTAACACAGGTGCAACAACGTTTTTGGAGAGTCCAAGCAACATAGATGCTGATGGTGTAAAAATCTTGGATGTATTAACTAGTGATAGCATGTTGGTAATCATGTTTGTCTGATATTATTTGTCAGTACATAGAACTTGAAACTCGTAAAATATTGTATGAATTCTGAAAAAAGTTAATTGCTTTATCGGCTGATAACGTTGTGAATTTGATGAAGGTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAGGTACATTTCTTGACTAATCGATTTAATATTGCTATATTATAATGTCATTTAGTATAAAGTATCGTCGGTTTGCGTTGATTGTCAAAAGATGAAGATATTTTAAGGACTTTGTCTACAACTTAACTGGTTTCATTTCATTGGATGACAAAGCATGTTGTCTTTATACGTATATCAAATGTTGGATCGATGAGCTTGGATTACGACTTTGTGTCACCCATCGGTAATGTTGTTGCAGTGGTATTACATATAGCCAGGACATTTAATTTGACTTAGGCGAATAAAATAATTCCGGAAAACCAATTAAGCTCTTACAAGTTACGAAAAGAAGAAGAATATAACTAAGACGGCAATGTGAGTTTTCTTTTCTAAGTATTAAATAAAGAAGTCAAGGAAGAGATGTTATGAATTGACAGGATGTAACCACTGTCCTATAGAGAATATGGTTAGGGAATATTACTATACTTATTTGTGTGGTTATAATCATTAGATATAGAATCGTATCATTTTTTTCGGAACAAACTAGAAAGGAAAGTAAAGACATCACCTATAAAGACGCCCCCTCAAGACAAGTGTTTTTTGTTTGTCTATTAAAAGTAAGGCAACATAAACCGATTTCAAGTCAGACCGGTTGTGAGAACATTTTTTCCCCTGAATCTGTATTAGTCCAAAGATAAATCGAAAAAAAAATAGATGAAAATGTAGAAACTCATAACATCAGCCTATAACCACTCATTGTCTCATATTATTTGTAAACTTTCCATTATCAGTAGCAAAATACAGATAGGAACTCACATTTTATACTTAAAATGTTGATATTAAGTTTATCGGTAATATACTGATTATTATAACCTAAACGTCCGTGGAGTACAGATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTTCAACTATCCGGTCAATCTTGCCGTCTCCAAGATTGCTCCTGCACTGATTGCTGGAAACTCTTTAGTCCTCAAGCCTCCAACTCAGGTTACTTCACTAGAATTCGATCTCAAATTAGCTATATTATAATGCATCAAATTCTTACTATCGATTTATCAATAATATTCTATATGATGACGACACATCTCCTTTACCTTTTTTGTTACGACGTTCTTTACCATTAACCACCTTCTCAATTAGTTAAATTTTGTCCCTTGCAAAACTTCAAACATATTTTCAAGTAATTCACGTTTAAACACAACTTCAATTTCCAAATACCTGTTTTCAATTTAACTTCAGATGCTATGTTTTTTTCCCCAAGTATTACCAAATTCATGTTCAAACGTCTACTTACTTCGAGTGATCATTCACACCAGGGTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCC</genome_strand>
        <mrna_strand>TTGTGAAAAAAAATCTAAAATTTGGTGTAAAAATGGCTGGAAATGGAGTATTTGCAGAAATAATTGATGGAGAAGTGTACAAATATTATTGTGAAGGAGAATGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGTTAAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTTCAACTATCCGGTCAATCTTGCCGTCTCCAAGATTGCTCCTGCACTGATTGCTGGAAACTCTTTAGTCCTCAAGCCTCCAACTCAG.........................................................................................................................................................................................................................................................................................................................................GNTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E325644" ref_strand="+" ref_description="SGN-E325644 	[cTOC-15-E15]">
      <seq>aaaaaataataaaaatccaccattttctcttcttatcctttttttttttaattattgtgaaaaaaaatctaaaatttggtgtaaaaatggctggaaatggagtatttgcagaaataattgatggagaagtgtacaaatattattgtgaaggagaatggaaaaaatcagcttctggaaaatctgttgctattattaatcctactacaagaaagacacaatacaaagttcaagcatgtacacaagaagaggtgaacaaagtaatggaaatagcaaaagcagcacaaaaatcatgggctaaaacaccactatggaaaagagcagagttacttcataaggcagctgcaattttgaaagaacacaaagcccctattgctgaatgccttgttaaagaaattgcaaaaccagctaaagatgctgtcaccgaggttgtgagatctggtgatttggtttcttacactgctgaagaaggagttagaattctaggggagggtaagttcttggtatctgatagtttccctggaaatgaaaggaccaaatactgtctaacatccaagataccgttgggtgtgattctggcgattcctcctttcactatccggtcaatcttgccgtctccagattgctcctgcactgattgctggaaactctttagtcctcaagcctccaactcagggtgctgtggctgccctgcatatggtgcattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21497" stop="18111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21298" g_stop="21122" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="231" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21121" i_stop="20495" i_length="627">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20494" g_stop="20301" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="425" r_length="194" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20300" i_stop="19892" i_length="409">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19891" g_stop="19763" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="554" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19762" i_stop="18893" i_length="870">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18892" g_stop="18773" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="672" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18772" i_stop="18444" i_length="329">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18443" g_stop="18411" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="705" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="49" polyA_stop="38"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E325644" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21298" e_stop="21122"/>
          <exon e_start="20494" e_stop="20301"/>
          <exon e_start="19891" e_stop="19763"/>
          <exon e_start="18892" e_stop="18773"/>
          <exon e_start="18443" e_stop="18411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAGGTATGTTATTTTTAGAAAAATAAAAATTATCAAGATTGAAAATTTTGTGTGTGTAGAGTAAATATATCAAGATTGATGTTTGTTTGAGATTTTAATGGTTGAAAGGGTAGCGTTTGCGTAACTGGTAAAGTTATTACCACGTAACTGTGACATGGATCAAGTTGCGTACAATAGACTCATGTAGTGTGGTCTTTTCGTGTATCAGACTGTTTCATGTTCTAGGACAGAGACAAGATTTTAACTTTATGGATTCTGAATAGAAAAATGTCATGATGTATAATGAATTTTCTGTCATTTGTTTCTAAGGTTCCTTGAATTTTGTGGATAGTGCTCTGGAATTTGTTGTACGGGTGACAGAATCAAGATTTCAACTTTATGAATTTTGTATTTTAGAACAATAATTACACTATCGTCAGTGTAGTTTAACCTATTATAACATGTTAGTTAACATTTTATTGAGTCGTAGGTAAATGTCATTATGTAAAATTACCGAGTCATGTGAACTCTTTAATAACACATTGATAAAATTTCTTGATTTCGCATCGAGGTACTTTTGCTTGTATTGTATTATTTGGTTTACGTACCAGAACTGATAACATTCGAGATTTGTGAATGTNTATTGTTCAGCATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGGTTAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAGGTACGCTGAATGAGTCCTATGTTGCTCAGACTAATCTAGAAATGTTGCCTGGTGTGTGTCCGATCCTCCAAAAGTAGTGCATTTTTAGAGACTCTGAGCAACATATACGTTGACCTATGTTACTCCGACTCTCCAAAAATACCTCTGGATATGTGTCGGATAATCCTCCAAAAGTAGTGCATTTTTGGAGGATCTAACACAGGTGCAACAACGTTTTTGGAGAGTCCAAGCAACATAGATGCTGATGGTGTAAAAATCTTGGATGTATTAACTAGTGATAGCATGTTGGTAATCATGTTTGTCTGATATTATTTGTCAGTACATAGAACTTGAAACTCGTAAAATATTGTATGAATTCTGAAAAAAGTTAATTGCTTTATCGGCTGATAACGTTGTGAATTTGATGAAGGTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAGGTACATTTCTTGACTAATCGATTTAATATTGCTATATTATAATGTCATTTAGTATAAAGTATCGTCGGTTTGCGTTGATTGTCAAAAGATGAAGATATTTTAAGGACTTTGTCTACAACTTAACTGGTTTCATTTCATTGGATGACAAAGCATGTTGTCTTTATACGTATATCAAATGTTGGATCGATGAGCTTGGATTACGACTTTGTGTCACCCATCGGTAATGTTGTTGCAGTGGTATTACATATAGCCAGGACATTTAATTTGACTTAGGCGAATAAAATAATTCCGGAAAACCAATTAAGCTCTTACAAGTTACGAAAAGAAGAAGAATATAACTAAGACGGCAATGTGAGTTTTCTTTTCTAAGTATTAAATAAAGAAGTCAAGGAAGAGATGTTATGAATTGACAGGATGTAACCACTGTCCTATAGAGAATATGGTTAGGGAATATTACTATACTTATTTGTGTGGTTATAATCATTAGATATAGAATCGTATCATTTTTTTCGGAACAAACTAGAAAGGAAAGTAAAGACATCACCTATAAAGACGCCCCCTCAAGACAAGTGTTTTTTGTTTGTCTATTAAAAGTAAGGCAACATAAACCGATTTCAAGTCAGACCGGTTGTGAGAACATTTTTTCCCCTGAATCTGTATTAGTCCAAAGATAAATCGAAAAAAAAATAGATGAAAATGTAGAAACTCATAACATCAGCCTATAACCACTCATTGTCTCATATTATTTGTAAACTTTCCATTATCAGTAGCAAAATACAGATAGGAACTCACATTTTATACTTAAAATGTTGATATTAAGTTTATCGGTAATATACTGATTATTATAACCTAAACGTCCGTGGAGTACAGATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTTCAACTATCCGGTCAATCTTGCCGTCTCCAAGATTGCTCCTGCACTGATTGCTGGAAACTCTTTAGTCCTCAAGCCTCCAACTCAGGTTACTTCACTAGAATTCGATCTCAAATTAGCTATATTATAATGCATCAAATTCTTACTATCGATTTATCAATAATATTCTATATGATGACGACACATCTCCTTTACCTTTTTTGTTACGACGTTCTTTACCATTAACCACCTTCTCAATTAGTTAAATTTTGTCCCTTGCAAAACTTCAAACATATTTTCAAGTAATTCACGTTTAAACACAACTTCAATTTCCAAATACCTGTTTTCAATTTAACTTCAGATGCTATGTTTTTTTCCCCAAGTATTACCAAATTCATGTTCAAACGTCTACTTACTTCGAGTGATCATTCACACCAGGGTGCTGTGGCTGCCCTGCATATGGTGCATTGC</genome_strand>
        <mrna_strand>TTGTGAAAAAAAATCTAAAATTTGGTGTAAAAATGGCTGGAAATGGAGTATTTGCAGAAATAATTGATGGAGAAGTGTACAAATATTATTGTGAAGGAGAATGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGTTAAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTTC-ACTATCCGGTCAATCTTGCCGTCTCC-AGATTGCTCCTGCACTGATTGCTGGAAACTCTTTAGTCCTCAAGCCTCCAACTCAG.........................................................................................................................................................................................................................................................................................................................................GGTGCTGTGGCTGCCCTGCATATGGTGCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E331697" ref_strand="+" ref_description="SGN-E331697 	[cTOD-7-J13]">
      <seq>tttttttaattattgtgaaaaaaaatctaaaatttggtgtaaaaatggctggaaatggagtatttgcagaaataattgatggagaagtgtacaaatattattgtgaaggagaatggaaaaaatcagcttctggaaaatctgttgctattattaatcctactacaagaaagacacaatacaaagttcaagcatgtacacaagaagaggtgaacaaagtaatggaaatagcaaaagcagcacaaaaatcatgggctaaaacaccactatggaaaagagcagagttacttcataaggcagctgcaattttgaaagaacacaaagcccctattgctgaatgccttgttaaagaaattgcaaaaccagctaaagatgctgtcaccgaggttgtgagatctggtgatttggtttcttacactgctgaagaaggagttagaattctaggggagggtaagttcttggtatctgatagtttccctggaaatgaaaggaccaaatactgtctaacatccaagataccgttgggtgtgattctggcgattcctcctttcaactatccggtcaatcttgccgtctccaagattgctcctgcactgattgctggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21497" stop="18500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21298" g_stop="21122" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="189" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21121" i_stop="20495" i_length="627">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20494" g_stop="20301" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="383" r_length="194" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20300" i_stop="19892" i_length="409">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19891" g_stop="19763" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="512" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19762" i_stop="18893" i_length="870">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18892" g_stop="18800" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="605" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E331697" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21298" e_stop="21122"/>
          <exon e_start="20494" e_stop="20301"/>
          <exon e_start="19891" e_stop="19763"/>
          <exon e_start="18892" e_stop="18800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAGGTATGTTATTTTTAGAAAAATAAAAATTATCAAGATTGAAAATTTTGTGTGTGTAGAGTAAATATATCAAGATTGATGTTTGTTTGAGATTTTAATGGTTGAAAGGGTAGCGTTTGCGTAACTGGTAAAGTTATTACCACGTAACTGTGACATGGATCAAGTTGCGTACAATAGACTCATGTAGTGTGGTCTTTTCGTGTATCAGACTGTTTCATGTTCTAGGACAGAGACAAGATTTTAACTTTATGGATTCTGAATAGAAAAATGTCATGATGTATAATGAATTTTCTGTCATTTGTTTCTAAGGTTCCTTGAATTTTGTGGATAGTGCTCTGGAATTTGTTGTACGGGTGACAGAATCAAGATTTCAACTTTATGAATTTTGTATTTTAGAACAATAATTACACTATCGTCAGTGTAGTTTAACCTATTATAACATGTTAGTTAACATTTTATTGAGTCGTAGGTAAATGTCATTATGTAAAATTACCGAGTCATGTGAACTCTTTAATAACACATTGATAAAATTTCTTGATTTCGCATCGAGGTACTTTTGCTTGTATTGTATTATTTGGTTTACGTACCAGAACTGATAACATTCGAGATTTGTGAATGTNTATTGTTCAGCATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGGTTAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAGGTACGCTGAATGAGTCCTATGTTGCTCAGACTAATCTAGAAATGTTGCCTGGTGTGTGTCCGATCCTCCAAAAGTAGTGCATTTTTAGAGACTCTGAGCAACATATACGTTGACCTATGTTACTCCGACTCTCCAAAAATACCTCTGGATATGTGTCGGATAATCCTCCAAAAGTAGTGCATTTTTGGAGGATCTAACACAGGTGCAACAACGTTTTTGGAGAGTCCAAGCAACATAGATGCTGATGGTGTAAAAATCTTGGATGTATTAACTAGTGATAGCATGTTGGTAATCATGTTTGTCTGATATTATTTGTCAGTACATAGAACTTGAAACTCGTAAAATATTGTATGAATTCTGAAAAAAGTTAATTGCTTTATCGGCTGATAACGTTGTGAATTTGATGAAGGTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAGGTACATTTCTTGACTAATCGATTTAATATTGCTATATTATAATGTCATTTAGTATAAAGTATCGTCGGTTTGCGTTGATTGTCAAAAGATGAAGATATTTTAAGGACTTTGTCTACAACTTAACTGGTTTCATTTCATTGGATGACAAAGCATGTTGTCTTTATACGTATATCAAATGTTGGATCGATGAGCTTGGATTACGACTTTGTGTCACCCATCGGTAATGTTGTTGCAGTGGTATTACATATAGCCAGGACATTTAATTTGACTTAGGCGAATAAAATAATTCCGGAAAACCAATTAAGCTCTTACAAGTTACGAAAAGAAGAAGAATATAACTAAGACGGCAATGTGAGTTTTCTTTTCTAAGTATTAAATAAAGAAGTCAAGGAAGAGATGTTATGAATTGACAGGATGTAACCACTGTCCTATAGAGAATATGGTTAGGGAATATTACTATACTTATTTGTGTGGTTATAATCATTAGATATAGAATCGTATCATTTTTTTCGGAACAAACTAGAAAGGAAAGTAAAGACATCACCTATAAAGACGCCCCCTCAAGACAAGTGTTTTTTGTTTGTCTATTAAAAGTAAGGCAACATAAACCGATTTCAAGTCAGACCGGTTGTGAGAACATTTTTTCCCCTGAATCTGTATTAGTCCAAAGATAAATCGAAAAAAAAATAGATGAAAATGTAGAAACTCATAACATCAGCCTATAACCACTCATTGTCTCATATTATTTGTAAACTTTCCATTATCAGTAGCAAAATACAGATAGGAACTCACATTTTATACTTAAAATGTTGATATTAAGTTTATCGGTAATATACTGATTATTATAACCTAAACGTCCGTGGAGTACAGATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTTCAACTATCCGGTCAATCTTGCCGTCTCCAAGATTGCTCCTGCACTGATTGCTGGAAAC</genome_strand>
        <mrna_strand>TTGTGAAAAAAAATCTAAAATTTGGTGTAAAAATGGCTGGAAATGGAGTATTTGCAGAAATAATTGATGGAGAAGTGTACAAATATTATTGTGAAGGAGAATGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGTTAAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTTCAACTATCCGGTCAATCTTGCCGTCTCCAAGATTGCTCCTGCACTGATTGCTGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E327395" ref_strand="+" ref_description="SGN-E327395 	[cTOC-19-A6]">
      <seq>aattttgaaagaacacaaagcccctattgctgaatgccttgttaaagaaattgcaaaaccagctaaagatgctgtcaccgaggttgtgagatctggtgatttggtttcttacactgctgaagaaggagttagaattctaggggagggtaagttcttggtatctgatagtttccctggaaatgaaaggaccaaatactgtctaacatccaagataccgttgggtgtgattctggcgattcctccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20682" stop="18558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20382" g_stop="20301" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20300" i_stop="19892" i_length="409">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19891" g_stop="19763" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="211" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19762" i_stop="18893" i_length="870">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18892" g_stop="18858" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="246" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E327395" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20382" e_stop="20301"/>
          <exon e_start="19891" e_stop="19763"/>
          <exon e_start="18892" e_stop="18858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGGTTAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAGGTACGCTGAATGAGTCCTATGTTGCTCAGACTAATCTAGAAATGTTGCCTGGTGTGTGTCCGATCCTCCAAAAGTAGTGCATTTTTAGAGACTCTGAGCAACATATACGTTGACCTATGTTACTCCGACTCTCCAAAAATACCTCTGGATATGTGTCGGATAATCCTCCAAAAGTAGTGCATTTTTGGAGGATCTAACACAGGTGCAACAACGTTTTTGGAGAGTCCAAGCAACATAGATGCTGATGGTGTAAAAATCTTGGATGTATTAACTAGTGATAGCATGTTGGTAATCATGTTTGTCTGATATTATTTGTCAGTACATAGAACTTGAAACTCGTAAAATATTGTATGAATTCTGAAAAAAGTTAATTGCTTTATCGGCTGATAACGTTGTGAATTTGATGAAGGTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAGGTACATTTCTTGACTAATCGATTTAATATTGCTATATTATAATGTCATTTAGTATAAAGTATCGTCGGTTTGCGTTGATTGTCAAAAGATGAAGATATTTTAAGGACTTTGTCTACAACTTAACTGGTTTCATTTCATTGGATGACAAAGCATGTTGTCTTTATACGTATATCAAATGTTGGATCGATGAGCTTGGATTACGACTTTGTGTCACCCATCGGTAATGTTGTTGCAGTGGTATTACATATAGCCAGGACATTTAATTTGACTTAGGCGAATAAAATAATTCCGGAAAACCAATTAAGCTCTTACAAGTTACGAAAAGAAGAAGAATATAACTAAGACGGCAATGTGAGTTTTCTTTTCTAAGTATTAAATAAAGAAGTCAAGGAAGAGATGTTATGAATTGACAGGATGTAACCACTGTCCTATAGAGAATATGGTTAGGGAATATTACTATACTTATTTGTGTGGTTATAATCATTAGATATAGAATCGTATCATTTTTTTCGGAACAAACTAGAAAGGAAAGTAAAGACATCACCTATAAAGACGCCCCCTCAAGACAAGTGTTTTTTGTTTGTCTATTAAAAGTAAGGCAACATAAACCGATTTCAAGTCAGACCGGTTGTGAGAACATTTTTTCCCCTGAATCTGTATTAGTCCAAAGATAAATCGAAAAAAAAATAGATGAAAATGTAGAAACTCATAACATCAGCCTATAACCACTCATTGTCTCATATTATTTGTAAACTTTCCATTATCAGTAGCAAAATACAGATAGGAACTCACATTTTATACTTAAAATGTTGATATTAAGTTTATCGGTAATATACTGATTATTATAACCTAAACGTCCGTGGAGTACAGATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTT</genome_strand>
        <mrna_strand>AATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGTTAAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E202883" ref_strand="+" ref_description="SGN-E202883 	[cLEB-1-H5]">
      <seq>gcacgagaaaaaatctaaaatttggtgtaaaaatggctggaaatggagtatttgcagaaataattgatggagaagtgtacaaatattattgtgaaggagaatggaaaaaatcagcttctggaaaatctgttgctattattaatcctactacaagaaagacacaatacaaagttcaagcatgtacacaagaagaggtgaacaaagtaatggaaatagcaaaagcagcacaaaaatcatgggctaaaacaccactatggaaaagagcagagttacttcataaggcagctgcaattttgaaagaacacaaagcccctattgctgaatgccttgttaaagaaattgcaaaaccagctaaagatgctgtcaccgaggttgtgagatctggtgatttggtttcttacactgctgaagaaggagttagaattctaggggagggtaagttcttggtatctgatagtttccctggaaatgaaaggaccaaatactgtctaacatccaagataccgttgggtgtgattctggcgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21497" stop="18566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21298" g_stop="21122" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21121" i_stop="20495" i_length="627">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20494" g_stop="20301" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="371" r_length="194" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20300" i_stop="19892" i_length="409">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19891" g_stop="19763" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="500" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19762" i_stop="18893" i_length="870">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18892" g_stop="18866" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="527" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E202883" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21298" e_stop="21122"/>
          <exon e_start="20494" e_stop="20301"/>
          <exon e_start="19891" e_stop="19763"/>
          <exon e_start="18892" e_stop="18866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAGGTATGTTATTTTTAGAAAAATAAAAATTATCAAGATTGAAAATTTTGTGTGTGTAGAGTAAATATATCAAGATTGATGTTTGTTTGAGATTTTAATGGTTGAAAGGGTAGCGTTTGCGTAACTGGTAAAGTTATTACCACGTAACTGTGACATGGATCAAGTTGCGTACAATAGACTCATGTAGTGTGGTCTTTTCGTGTATCAGACTGTTTCATGTTCTAGGACAGAGACAAGATTTTAACTTTATGGATTCTGAATAGAAAAATGTCATGATGTATAATGAATTTTCTGTCATTTGTTTCTAAGGTTCCTTGAATTTTGTGGATAGTGCTCTGGAATTTGTTGTACGGGTGACAGAATCAAGATTTCAACTTTATGAATTTTGTATTTTAGAACAATAATTACACTATCGTCAGTGTAGTTTAACCTATTATAACATGTTAGTTAACATTTTATTGAGTCGTAGGTAAATGTCATTATGTAAAATTACCGAGTCATGTGAACTCTTTAATAACACATTGATAAAATTTCTTGATTTCGCATCGAGGTACTTTTGCTTGTATTGTATTATTTGGTTTACGTACCAGAACTGATAACATTCGAGATTTGTGAATGTNTATTGTTCAGCATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGGTTAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAGGTACGCTGAATGAGTCCTATGTTGCTCAGACTAATCTAGAAATGTTGCCTGGTGTGTGTCCGATCCTCCAAAAGTAGTGCATTTTTAGAGACTCTGAGCAACATATACGTTGACCTATGTTACTCCGACTCTCCAAAAATACCTCTGGATATGTGTCGGATAATCCTCCAAAAGTAGTGCATTTTTGGAGGATCTAACACAGGTGCAACAACGTTTTTGGAGAGTCCAAGCAACATAGATGCTGATGGTGTAAAAATCTTGGATGTATTAACTAGTGATAGCATGTTGGTAATCATGTTTGTCTGATATTATTTGTCAGTACATAGAACTTGAAACTCGTAAAATATTGTATGAATTCTGAAAAAAGTTAATTGCTTTATCGGCTGATAACGTTGTGAATTTGATGAAGGTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAGGTACATTTCTTGACTAATCGATTTAATATTGCTATATTATAATGTCATTTAGTATAAAGTATCGTCGGTTTGCGTTGATTGTCAAAAGATGAAGATATTTTAAGGACTTTGTCTACAACTTAACTGGTTTCATTTCATTGGATGACAAAGCATGTTGTCTTTATACGTATATCAAATGTTGGATCGATGAGCTTGGATTACGACTTTGTGTCACCCATCGGTAATGTTGTTGCAGTGGTATTACATATAGCCAGGACATTTAATTTGACTTAGGCGAATAAAATAATTCCGGAAAACCAATTAAGCTCTTACAAGTTACGAAAAGAAGAAGAATATAACTAAGACGGCAATGTGAGTTTTCTTTTCTAAGTATTAAATAAAGAAGTCAAGGAAGAGATGTTATGAATTGACAGGATGTAACCACTGTCCTATAGAGAATATGGTTAGGGAATATTACTATACTTATTTGTGTGGTTATAATCATTAGATATAGAATCGTATCATTTTTTTCGGAACAAACTAGAAAGGAAAGTAAAGACATCACCTATAAAGACGCCCCCTCAAGACAAGTGTTTTTTGTTTGTCTATTAAAAGTAAGGCAACATAAACCGATTTCAAGTCAGACCGGTTGTGAGAACATTTTTTCCCCTGAATCTGTATTAGTCCAAAGATAAATCGAAAAAAAAATAGATGAAAATGTAGAAACTCATAACATCAGCCTATAACCACTCATTGTCTCATATTATTTGTAAACTTTCCATTATCAGTAGCAAAATACAGATAGGAACTCACATTTTATACTTAAAATGTTGATATTAAGTTTATCGGTAATATACTGATTATTATAACCTAAACGTCCGTGGAGTACAGATACCGTTGGGTGTGATTCTGGCGATT</genome_strand>
        <mrna_strand>GCACGAGAAAAAATCTAAAATTTGGTGTAAAAATGGCTGGAAATGGAGTATTTGCAGAAATAATTGATGGAGAAGTGTACAAATATTATTGTGAAGGAGAATGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGTTAAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCGTTGGGTGTGATTCTGGCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E245262" ref_strand="+" ref_description="SGN-E245262 	[cLEF-44-N7]">
      <seq>aaaaataataaaaatccaccattttctcttcttatcctttttttttttttaattattgtgaaaaaaaatctaaaatttggtgtaaaaatggctggaaatggagtatttgcagaaataattgatggagaagtgtacaaatattattgtgaaggagaatggaaaaaatcagcttctggaaaatctgttgctattattaatcctactacaagaaagacacaatacaaagttcaagcatgtacacaagaagaggtgaacaaagtaatggaaatagcaaaagcagcacaaaaatcatgggctaaaacaccactatggaaaagagcagagttacttcataaggcagctgcaattttgaaagaacacaaagcccctattgctgaatgccttgttaaagaaattgcaaaaccagctaaagatgctgtcaccgaggttgtgagatctggtgatttggtttcttacactgctgaagaaggagttagaattctaggggagggtaagttcttggtatctgatagtttccctggaaatgaaaggaccaaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="105410" stop="19477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22829" g_stop="22825" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22824" i_stop="22678" i_length="147">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.273" a_score="0.53"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22677" g_stop="22629" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="53" r_length="48" r_score="0.531"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22628" i_stop="21302" i_length="1327">
            <donor d_prob="0.946" d_score="0.53"/>
            <acceptor a_prob="0.000" a_score="0.75"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21301" g_stop="21122" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="232" r_length="179" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21121" i_stop="20495" i_length="627">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20494" g_stop="20301" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="426" r_length="194" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20300" i_stop="19892" i_length="409">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19891" g_stop="19777" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="541" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E245262" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22829" e_stop="22825"/>
          <exon e_start="22677" e_stop="22629"/>
          <exon e_start="21301" e_stop="21122"/>
          <exon e_start="20494" e_stop="20301"/>
          <exon e_start="19891" e_stop="19777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATATTCTTTTACTTGCTATATATATGGATTGTTTTGATATGTATACATCTATATGTGACTTTTTAGGACAATGTTATCTAATCAATTGATCAATCGATTTTAAGCTAGATACGACATTTGACCAATAAATATCTTATGATTTTTCAGTGATGATATTGAACTGGTCTTTGATTTATATACGTTCTATAATTTTCAGGCAAAGATTGTTTAATTAATAGGTCACACTTGAGCCTAGAAACAGTATCTATATTATATGCATTCTATGACTAAAAACAAAGAGAACTCGATCAATAAGTCTTGAGTATAACAATGGTCCTTGACCTATATGCGTTGTGTGATTTTCAAGCAAAAGAAAATTGATCGTTCAGTTTTGAGCCAGGTGACGATCTTTGACCTATATGTATTCTATGGTTTTAGGCAAAAAAAAATGTTAAAATGATAGATTGATTGATTACTTTGTGTTTATGTGACTCAATCAGTATTTTTAGTGTATCAAATTATAAAGAAAAAGAAGAAAAAAATAAGCAATCAAGTTACCTCAATTGAAGAAAAGAAGAGAAAGAGCAACAAGTTGGTAATTGTGAAGGGAAGAAAGAGATTAAATAGTTAAAATGAAGAAAATGATTAATTACTTATCACTAATTCAGTCAACTCTCATAAAGAGAGATTGATTGTTGTAATGTATAGGATGGTTAGATGCACCATAATTTCTTTGTTAAAAATAAATTGTGACAAAAAGTAAAGAAAATAACAATTTAAGTAAAAAAAACCTTTACTTCACATTAAATGCAAGTTTCCTCAAAAGATGATCATAATTTGACCAAACAAAACACAAACACAAAATATATTAAGCTTGACTATTTCATAATTACATAATAGAACTTAAGTTCATGAGGAGAATTTCTTTGTTGTCTCTTTATCAATTTCTTTGTTAGTTTGATATACTGAAATTACTGAGGAAGTTATATAAATACATAGTAATCAATCAGTTCAAAATAAGTTAATCAATTTAGTATTTTTTGTCCAGAAAATCATAACTTACATATAGGTGAAAGATTGTCAGTAAGTTCAAATTGATCAATTAAATATTTTTTGCTTGAAAATGACACAGTGCATATATGTCAAAGACCTTTATTATGCTCAAGACTAATCGATCGAATACTCTTTATTCTAGGCTCAGGTGTGACCTATTAATTGAACAATTTTTGTCTGAAAATTATCACATGTATATAAATCAAAGATCAACTAAATATCACCATCGATAAATCATAATGTATTTACAAGTTAAGTGTTGTGTTTGGCTTAGAATTAATCGATCAATCGAACACCCTTAAACATTCCCCTTCCCCTCGAAAGTCATAGATGTGTATATATATATATATATATAGTCCGTATATATAACAGGCAAAAAAGTATTTCCCTCTCTCTTTTATTTAGGTTGATCAATCAACTCTAATGGCTTTTACAAAGCCTTTATTGGCAAAATCATTCAAAAAAAAGTCAAGGCTACAAGTGCAAAACACTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAGGTATGTTATTTTTAGAAAAATAAAAATTATCAAGATTGAAAATTTTGTGTGTGTAGAGTAAATATATCAAGATTGATGTTTGTTTGAGATTTTAATGGTTGAAAGGGTAGCGTTTGCGTAACTGGTAAAGTTATTACCACGTAACTGTGACATGGATCAAGTTGCGTACAATAGACTCATGTAGTGTGGTCTTTTCGTGTATCAGACTGTTTCATGTTCTAGGACAGAGACAAGATTTTAACTTTATGGATTCTGAATAGAAAAATGTCATGATGTATAATGAATTTTCTGTCATTTGTTTCTAAGGTTCCTTGAATTTTGTGGATAGTGCTCTGGAATTTGTTGTACGGGTGACAGAATCAAGATTTCAACTTTATGAATTTTGTATTTTAGAACAATAATTACACTATCGTCAGTGTAGTTTAACCTATTATAACATGTTAGTTAACATTTTATTGAGTCGTAGGTAAATGTCATTATGTAAAATTACCGAGTCATGTGAACTCTTTAATAACACATTGATAAAATTTCTTGATTTCGCATCGAGGTACTTTTGCTTGTATTGTATTATTTGGTTTACGTACCAGAACTGATAACATTCGAGATTTGTGAATGTNTATTGTTCAGCATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGGTTAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAGGTACGCTGAATGAGTCCTATGTTGCTCAGACTAATCTAGAAATGTTGCCTGGTGTGTGTCCGATCCTCCAAAAGTAGTGCATTTTTAGAGACTCTGAGCAACATATACGTTGACCTATGTTACTCCGACTCTCCAAAAATACCTCTGGATATGTGTCGGATAATCCTCCAAAAGTAGTGCATTTTTGGAGGATCTAACACAGGTGCAACAACGTTTTTGGAGAGTCCAAGCAACATAGATGCTGATGGTGTAAAAATCTTGGATGTATTAACTAGTGATAGCATGTTGGTAATCATGTTTGTCTGATATTATTTGTCAGTACATAGAACTTGAAACTCGTAAAATATTGTATGAATTCTGAAAAAAGTTAATTGCTTTATCGGCTGATAACGTTGTGAATTTGATGAAGGTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACT</genome_strand>
        <mrna_strand>AAAAA...................................................................................................................................................TAATAAAAATCCAC-CATTTTCTCTTCTTATCCTTTTTTTTTTTTTAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-TTGTGAAAAAAAATCTAAAATTTGGTGTAAAAATGGCTGGAAATGGAGTATTTGCAGAAATAATTGATGGAGAAGTGTACAAATATTATTGTGAAGGAGAATGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGTTAAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E312721" ref_strand="+" ref_description="SGN-E312721 	[cTOA-8-M7]">
      <seq>aataataaaaatccaccattttctcttcttatcctttttttttttaattattgtgaaaaaaaatctaaaatttggtgtaaaaatggctggaaatggagtatttgcagaaataattgatggagaagtgtacaaatattattgtgaaggagaatggaaaaaatcagcttctggaaaatctgttgctattattaatcctactacaagaaagacacaatacaaagttcaagcatgtatacaagaagaggtgaacaaagtaatggaaatagcaaaagcagcacaaaaatcatgggctaaaacaccactatggaaaagagcagagttacttcataaggcagctgcaattttgaaagaacacaaagcccctattgctgaatgccttgttaaagaaattgcaaaaccagctaaagatgctgtcaccgaggttgtgagatctggtgatttggtttcttacactgctgaagaaggagttagaattctaggggagggtaagttcttggtatctgatagtttccctggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21497" stop="19492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21298" g_stop="21122" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="227" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21121" i_stop="20495" i_length="627">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20494" g_stop="20301" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="421" r_length="194" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20300" i_stop="19892" i_length="409">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19891" g_stop="19792" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="521" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="45" polyA_stop="34"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E312721" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21298" e_stop="21122"/>
          <exon e_start="20494" e_stop="20301"/>
          <exon e_start="19891" e_stop="19792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAGGTATGTTATTTTTAGAAAAATAAAAATTATCAAGATTGAAAATTTTGTGTGTGTAGAGTAAATATATCAAGATTGATGTTTGTTTGAGATTTTAATGGTTGAAAGGGTAGCGTTTGCGTAACTGGTAAAGTTATTACCACGTAACTGTGACATGGATCAAGTTGCGTACAATAGACTCATGTAGTGTGGTCTTTTCGTGTATCAGACTGTTTCATGTTCTAGGACAGAGACAAGATTTTAACTTTATGGATTCTGAATAGAAAAATGTCATGATGTATAATGAATTTTCTGTCATTTGTTTCTAAGGTTCCTTGAATTTTGTGGATAGTGCTCTGGAATTTGTTGTACGGGTGACAGAATCAAGATTTCAACTTTATGAATTTTGTATTTTAGAACAATAATTACACTATCGTCAGTGTAGTTTAACCTATTATAACATGTTAGTTAACATTTTATTGAGTCGTAGGTAAATGTCATTATGTAAAATTACCGAGTCATGTGAACTCTTTAATAACACATTGATAAAATTTCTTGATTTCGCATCGAGGTACTTTTGCTTGTATTGTATTATTTGGTTTACGTACCAGAACTGATAACATTCGAGATTTGTGAATGTNTATTGTTCAGCATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGGTTAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAGGTACGCTGAATGAGTCCTATGTTGCTCAGACTAATCTAGAAATGTTGCCTGGTGTGTGTCCGATCCTCCAAAAGTAGTGCATTTTTAGAGACTCTGAGCAACATATACGTTGACCTATGTTACTCCGACTCTCCAAAAATACCTCTGGATATGTGTCGGATAATCCTCCAAAAGTAGTGCATTTTTGGAGGATCTAACACAGGTGCAACAACGTTTTTGGAGAGTCCAAGCAACATAGATGCTGATGGTGTAAAAATCTTGGATGTATTAACTAGTGATAGCATGTTGGTAATCATGTTTGTCTGATATTATTTGTCAGTACATAGAACTTGAAACTCGTAAAATATTGTATGAATTCTGAAAAAAGTTAATTGCTTTATCGGCTGATAACGTTGTGAATTTGATGAAGGTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATG</genome_strand>
        <mrna_strand>TTGTGAAAAAAAATCTAAAATTTGGTGTAAAAATGGCTGGAAATGGAGTATTTGCAGAAATAATTGATGGAGAAGTGTACAAATATTATTGTGAAGGAGAATGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTATACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGTTAAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E332927" ref_strand="+" ref_description="SGN-E332927 	[cTOD-19-O4]">
      <seq>aataataaaaatccaccattttctcttcttatccttttttttttttaattattgtgaaaaaaaatctaaaatttggtgtaaaaatggctggaaatggagtatttgcagaaataattgatggagaagtgtacaaatattattgtgaaggagaatggaaaaaatcagcttctggaaaatctgttgctattattaatcctactacaagaaagacacaatacaaagttcaagcatgtacacaagaagaggtgaacaaagtaatggaaatagcaaaagcagcacaaaaatcatgggctaaaacaccactatggaaaagagcagagttacttcataaggcagctgcaattttgaaagaacacaaagcccctattgctgaatgccttgttaaagaaattgcaaaaccagctaaagatgctgtcaccgaggttgtgagatctggtgatttggtttcttacactgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="105410" stop="19555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21432" g_stop="21380" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.547"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21379" i_stop="21299" i_length="81">
            <donor d_prob="0.000" d_score="0.54"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21298" g_stop="21122" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="228" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21121" i_stop="20495" i_length="627">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20494" g_stop="20301" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="422" r_length="194" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20300" i_stop="19892" i_length="409">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19891" g_stop="19855" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="459" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E332927" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21432" e_stop="21380"/>
          <exon e_start="21298" e_stop="21122"/>
          <exon e_start="20494" e_stop="20301"/>
          <exon e_start="19891" e_stop="19855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATATAACAGGCAAAAAAGTATTTCCCTCTCTCTTTTATTTAGGTTGATCAATCAACTCTAATGGCTTTTACAAAGCCTTTATTGGCAAAATCATTCAAAAAAAAGTCAAGGCTACAAGTGCAAAACACTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAGGTATGTTATTTTTAGAAAAATAAAAATTATCAAGATTGAAAATTTTGTGTGTGTAGAGTAAATATATCAAGATTGATGTTTGTTTGAGATTTTAATGGTTGAAAGGGTAGCGTTTGCGTAACTGGTAAAGTTATTACCACGTAACTGTGACATGGATCAAGTTGCGTACAATAGACTCATGTAGTGTGGTCTTTTCGTGTATCAGACTGTTTCATGTTCTAGGACAGAGACAAGATTTTAACTTTATGGATTCTGAATAGAAAAATGTCATGATGTATAATGAATTTTCTGTCATTTGTTTCTAAGGTTCCTTGAATTTTGTGGATAGTGCTCTGGAATTTGTTGTACGGGTGACAGAATCAAGATTTCAACTTTATGAATTTTGTATTTTAGAACAATAATTACACTATCGTCAGTGTAGTTTAACCTATTATAACATGTTAGTTAACATTTTATTGAGTCGTAGGTAAATGTCATTATGTAAAATTACCGAGTCATGTGAACTCTTTAATAACACATTGATAAAATTTCTTGATTTCGCATCGAGGTACTTTTGCTTGTATTGTATTATTTGGTTTACGTACCAGAACTGATAACATTCGAGATTTGTGAATGTNTATTGTTCAGCATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGGTTAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAGGTACGCTGAATGAGTCCTATGTTGCTCAGACTAATCTAGAAATGTTGCCTGGTGTGTGTCCGATCCTCCAAAAGTAGTGCATTTTTAGAGACTCTGAGCAACATATACGTTGACCTATGTTACTCCGACTCTCCAAAAATACCTCTGGATATGTGTCGGATAATCCTCCAAAAGTAGTGCATTTTTGGAGGATCTAACACAGGTGCAACAACGTTTTTGGAGAGTCCAAGCAACATAGATGCTGATGGTGTAAAAATCTTGGATGTATTAACTAGTGATAGCATGTTGGTAATCATGTTTGTCTGATATTATTTGTCAGTACATAGAACTTGAAACTCGTAAAATATTGTATGAATTCTGAAAAAAGTTAATTGCTTTATCGGCTGATAACGTTGTGAATTTGATGAAGGTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTG</genome_strand>
        <mrna_strand>AATA-ATAAAAATC-CACCATTTTCTCTTCTTATCCTTTTTTTTTTTTAATTA.................................................................................TTGTGAAAAAAAATCTAAAATTTGGTGTAAAAATGGCTGGAAATGGAGTATTTGCAGAAATAATTGATGGAGAAGTGTACAAATATTATTGTGAAGGAGAATGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGTTAAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E267289" ref_strand="+" ref_description="SGN-E267289 	[cLEI-4-N14]">
      <seq>tttttttttttaattattgtgaaaaaaaatctaaaatttggtgtaaaaatggctggaaatggagtatttgcagaaataattgatggagaagtgtacaaatattattgtgaaggagaatggaaaaaatcagcttctggaaaatctgttgctattattaatcctactacaagaaagacacaatacaaagttcaagcatgtacacaagaagaggtgaacaaagtaatggaaatagcaaaagcagcacaaaaatcatgggctaaaacaccactatggaaaagagcagagttacttcataaggcagctgcaattttgaaagaacacaaagcccctattgctgaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21497" stop="20046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21298" g_stop="21122" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="193" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21121" i_stop="20495" i_length="627">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20494" g_stop="20346" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="342" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="11" polyA_stop="1"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E267289" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21298" e_stop="21122"/>
          <exon e_start="20494" e_stop="20346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAGGTATGTTATTTTTAGAAAAATAAAAATTATCAAGATTGAAAATTTTGTGTGTGTAGAGTAAATATATCAAGATTGATGTTTGTTTGAGATTTTAATGGTTGAAAGGGTAGCGTTTGCGTAACTGGTAAAGTTATTACCACGTAACTGTGACATGGATCAAGTTGCGTACAATAGACTCATGTAGTGTGGTCTTTTCGTGTATCAGACTGTTTCATGTTCTAGGACAGAGACAAGATTTTAACTTTATGGATTCTGAATAGAAAAATGTCATGATGTATAATGAATTTTCTGTCATTTGTTTCTAAGGTTCCTTGAATTTTGTGGATAGTGCTCTGGAATTTGTTGTACGGGTGACAGAATCAAGATTTCAACTTTATGAATTTTGTATTTTAGAACAATAATTACACTATCGTCAGTGTAGTTTAACCTATTATAACATGTTAGTTAACATTTTATTGAGTCGTAGGTAAATGTCATTATGTAAAATTACCGAGTCATGTGAACTCTTTAATAACACATTGATAAAATTTCTTGATTTCGCATCGAGGTACTTTTGCTTGTATTGTATTATTTGGTTTACGTACCAGAACTGATAACATTCGAGATTTGTGAATGTNTATTGTTCAGCATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGC</genome_strand>
        <mrna_strand>TTGTGAAAAAAAATCTAAAATTTGGTGTAAAAATGGCTGGAAATGGAGTATTTGCAGAAATAATTGATGGAGAAGTGTACAAATATTATTGTGAAGGAGAATGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E309237" ref_strand="+" ref_description="SGN-E309237 	[cLEY-22-E3]">
      <seq>tgaaattgagcaagcagctgtgattcattatgatggagttatgaaaccatggttagagattggactccagaagttcaagccgtactggaagaaacacgttaggtatgaacatccttttgtgcaacaatgcaatattcatgactaggaattttatcctttagcagtaggctgagttccatttcaccacaatcacgtagtgtaggaacccctcacgttcaccttattctttcacacattgatcccgcaatttttaacttgtaaagtccaacttttacgcccctcctgtccacgtttatttcctgctcagtggtcatagaaatttatcccacaatagcaataacttgggacctgatattggcatgtccctgagattcctgcaatgcttggacttgcatgtatattgatcttgtagaatgctaaaaatgttcttataatttaccagttgtagatgagataagaaatatatttctctgtgacattcttcttgtagaatgtatattgttggagaggctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="26433" stop="25319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26133" g_stop="25619" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E309237" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26133" e_stop="25619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTGAGCAAGCAGCTGTGATTCATTATGATGGAGTTATGAAACCATGGTTAGAGATTGGACTCCAGAAGTTCAAGCCGTACTGGAAGAAACACGTTAGGTATGAACATCCTTTTGTGCAACAATGCAATATTCATGACTAGGAATTTTATCCTTTAGCAGTAGGCTGAGTTCCATTTCACCACAATCACGTAGTGTAGGAACCCCTCACGTTCACCTTATTCTTTCACACATTGATCCCGCAATTTTTAACTTGTAAAGTCCAACTTTTACGCCCCTCCTGTCCACGTTTATTTCCTGCTCAGTGGTCATAGAAATTTATCCCACAATAGCAATAACTTGGGACCTGATATTGGCATGTCCCTGAGATTCCTGCAATGCTTGGACTTGCATGTATATTGATCTTGTAGAATGCTAAAAATGTTCTTATAATTTACCAGTTGTAGATGAGATAAGAAATATATTTCTCTGTGACATTCTTCTTGTAGAATGTATATTGTTGGAGAGGCTTTG</genome_strand>
        <mrna_strand>TGAAATTGAGCAAGCAGCTGTGATTCATTATGATGGAGTTATGAAACCATGGTTAGAGATTGGACTCCAGAAGTTCAAGCCGTACTGGAAGAAACACGTTAGGTATGAACATCCTTTTGTGCAACAATGCAATATTCATGACTAGGAATTTTATCCTTTAGCAGTAGGCTGAGTTCCATTTCACCACAATCACGTAGTGTAGGAACCCCTCACGTTCACCTTATTCTTTCACACATTGATCCCGCAATTTTTAACTTGTAAAGTCCAACTTTTACGCCCCTCCTGTCCACGTTTATTTCCTGCTCAGTGGTCATAGAAATTTATCCCACAATAGCAATAACTTGGGACCTGATATTGGCATGTCCCTGAGATTCCTGCAATGCTTGGACTTGCATGTATATTGATCTTGTAGAATGCTAAAAATGTTCTTATAATTTACCAGTTGTAGATGAGATAAGAAATATATTTCTCTGTGACATTCTTCTTGTAGAATGTATATTGTTGGAGAGGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E218084" ref_strand="-" ref_description="SGN-E218084 	[cLEL-23-I23]">
      <seq>gtactggaagaaacacgttaggtatgaacatccttttgtgcaacaatgcaatattcatgactaggaattttatcctttagcagtaggctgagttccatttcaccacaatcacgtagtgtaggaacccctcacgttcaccttattctttcacacattgatcccgcaatttttaacttgtaaagtccaacttttacgcccctcctgtccacgtttatttcctgctcagtggtcatagaaatttatcccacaatagcaataacttgggacctgatattggcatgtccctgagattcctgcaatgcttggacttgcatgtatattgatcttgtagaatgctaaaaatgttcttataatttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="26352" stop="25396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26052" g_stop="25693" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="375"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E218084" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218084" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26052" e_stop="25693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTGGAAGAAACACGTTAGGTATGAACATCCTTTTGTGCAACAATGCAATATTCATGACTAGGAATTTTATCCTTTAGCAGTAGGCTGAGTTCCATTTCACCACAATCACGTAGTGTAGGAACCCCTCACGTTCACCTTATTCTTTCACACATTGATCCCGCAATTTTTAACTTGTAAAGTCCAACTTTTACGCCCCTCCTGTCCACGTTTATTTCCTGCTCAGTGGTCATAGAAATTTATCCCACAATAGCAATAACTTGGGACCTGATATTGGCATGTCCCTGAGATTCCTGCAATGCTTGGACTTGCATGTATATTGATCTTGTAGAATGCTAAAAATGTTCTTATAATTTACCA</genome_strand>
        <mrna_strand>GTACTGGAAGAAACACGTTAGGTATGAACATCCTTTTGTGCAACAATGCAATATTCATGACTAGGAATTTTATCCTTTAGCAGTAGGCTGAGTTCCATTTCACCACAATCACGTAGTGTAGGAACCCCTCACGTTCACCTTATTCTTTCACACATTGATCCCGCAATTTTTAACTTGTAAAGTCCAACTTTTACGCCCCTCCTGTCCACGTTTATTTCCTGCTCAGTGGTCATAGAAATTTATCCCACAATAGCAATAACTTGGGACCTGATATTGGCATGTCCCTGAGATTCCTGCAATGCTTGGACTTGCATGTATATTGATCTTGTAGAATGCTAAAAATGTTCTTATAATTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E218008" ref_strand="-" ref_description="SGN-E218008 	[cLEL-23-I23]">
      <seq>aatattcatgactaggaattttatcctttagcagtaggctgagttccatttcaccccaatcacgtagtgtaggaacccctcacgttcaccttattctttcacacattgatcccgcaatttttaacttgtaaagtccaacttttacgcccctcctgtccacgtttatttcctgctcagtggtcatagaaatttatcccacaatagcaataacttgggacctgatattggcatgtccctgagattcctgcaatgcttggacttgcatgtatattgatcttgtagaatgctaaaaatgttcttataatttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="26303" stop="25396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26003" g_stop="25693" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="312" polyA_stop="326"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E218008" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218008" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26003" e_stop="25693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTCATGACTAGGAATTTTATCCTTTAGCAGTAGGCTGAGTTCCATTTCACCACAATCACGTAGTGTAGGAACCCCTCACGTTCACCTTATTCTTTCACACATTGATCCCGCAATTTTTAACTTGTAAAGTCCAACTTTTACGCCCCTCCTGTCCACGTTTATTTCCTGCTCAGTGGTCATAGAAATTTATCCCACAATAGCAATAACTTGGGACCTGATATTGGCATGTCCCTGAGATTCCTGCAATGCTTGGACTTGCATGTATATTGATCTTGTAGAATGCTAAAAATGTTCTTATAATTTACCA</genome_strand>
        <mrna_strand>AATATTCATGACTAGGAATTTTATCCTTTAGCAGTAGGCTGAGTTCCATTTCACCCCAATCACGTAGTGTAGGAACCCCTCACGTTCACCTTATTCTTTCACACATTGATCCCGCAATTTTTAACTTGTAAAGTCCAACTTTTACGCCCCTCCTGTCCACGTTTATTTCCTGCTCAGTGGTCATAGAAATTTATCCCACAATAGCAATAACTTGGGACCTGATATTGGCATGTCCCTGAGATTCCTGCAATGCTTGGACTTGCATGTATATTGATCTTGTAGAATGCTAAAAATGTTCTTATAATTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E214507" ref_strand="+" ref_description="SGN-E214507 	[cLEC-77-P14]">
      <seq>cattccggcgaatggatatgctcatcaatttcactgaccccatggtggcaacgaaatttgacgcgaaatcatgcacatgggcatttgggatgaatttgtttgatctgcaggagtggaggaaacgaaacttgactgggctctatcacaagtacttggagctgggaagtgatagaccattaatgaaagctggtactttgcccattggttggatgaccttctacaaacatacacgtgctatagatcggagatggcatgtcttgggattggggtacgactctggtgtcaaattgaatgaaattgagcaagcagctgtgattcattatgatggagttatgaaaccatggttagagattggactccagaagttcaagccgtactggaagaaacacgttaggtatgaacatccttttgtgcaacaatgcaatattcatgactaggaattttatcctttagcagtaggctgagttccatttcaccacaatcacgtagtgtaggaacccctcacgttcaccttattctttcacacattgatcccgcaatttttaacttgtaaagtccaacttttacgcccctcctgtccacgtttatttcctgctcagtggtcatagaaatttatcccacaatagcaataacttgggacctgatattggcatgtccctgagattcctgcaatgctggnacttgcatgtatattgatcttgtagaatgctaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="26900" stop="25409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26600" g_stop="26440" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26439" i_stop="26265" i_length="175">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26264" g_stop="25709" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="716" r_length="555" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E214507" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26600" e_stop="26440"/>
          <exon e_start="26264" e_stop="25709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCCGGCGAATGGATATGCTCATCAATTTCACTGACCCCATGGTGGCAACGAAATTTGACGCGAAATCATGCACATGGGCATTTGGGATGAATTTGTTTGATCTGCAGGAGTGGAGGAAACGAAACTTGACTGGGCTCTATCACAAGTACTTGGAGCTGGTATGCATCTATACCCTGTTGTTTGTTAATTACTTATGGAATTGACCAGCGATTAATCATATTCTTAACTTCTCTATAATAATGTATGTGTATAATTTTGACTTATAGCTGTTTTATTTAACATTGTTCTCCTTGTATTCGTCACTGCCTCATTGTTAGCCCATGCATTATGCAGGGAAGTGATAGACCATTAATGAAAGCTGGTACTTTGCCCATTGGTTGGATGACCTTCTACAAACATACACGTGCTATAGATCGGAGATGGCATGTCTTGGGATTGGGGTACGACTCTGGTGTCAAATTGAATGAAATTGAGCAAGCAGCTGTGATTCATTATGATGGAGTTATGAAACCATGGTTAGAGATTGGACTCCAGAAGTTCAAGCCGTACTGGAAGAAACACGTTAGGTATGAACATCCTTTTGTGCAACAATGCAATATTCATGACTAGGAATTTTATCCTTTAGCAGTAGGCTGAGTTCCATTTCACCACAATCACGTAGTGTAGGAACCCCTCACGTTCACCTTATTCTTTCACACATTGATCCCGCAATTTTTAACTTGTAAAGTCCAACTTTTACGCCCCTCCTGTCCACGTTTATTTCCTGCTCAGTGGTCATAGAAATTTATCCCACAATAGCAATAACTTGGGACCTGATATTGGCATGTCCCTGAGATTCCTGCAATGCTTGGACTTGCATGTATATTGATCTTGTAGAATGCTAAAAATG</genome_strand>
        <mrna_strand>CATTCCGGCGAATGGATATGCTCATCAATTTCACTGACCCCATGGTGGCAACGAAATTTGACGCGAAATCATGCACATGGGCATTTGGGATGAATTTGTTTGATCTGCAGGAGTGGAGGAAACGAAACTTGACTGGGCTCTATCACAAGTACTTGGAGCTG...............................................................................................................................................................................GGAAGTGATAGACCATTAATGAAAGCTGGTACTTTGCCCATTGGTTGGATGACCTTCTACAAACATACACGTGCTATAGATCGGAGATGGCATGTCTTGGGATTGGGGTACGACTCTGGTGTCAAATTGAATGAAATTGAGCAAGCAGCTGTGATTCATTATGATGGAGTTATGAAACCATGGTTAGAGATTGGACTCCAGAAGTTCAAGCCGTACTGGAAGAAACACGTTAGGTATGAACATCCTTTTGTGCAACAATGCAATATTCATGACTAGGAATTTTATCCTTTAGCAGTAGGCTGAGTTCCATTTCACCACAATCACGTAGTGTAGGAACCCCTCACGTTCACCTTATTCTTTCACACATTGATCCCGCAATTTTTAACTTGTAAAGTCCAACTTTTACGCCCCTCCTGTCCACGTTTATTTCCTGCTCAGTGGTCATAGAAATTTATCCCACAATAGCAATAACTTGGGACCTGATATTGGCATGTCCCTGAGATTCCTGCAATGCTGGNACTTGCATGTATATTGATCTTGTAGAATGCT-AAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E350600" ref_strand="+" ref_description="SGN-E350600 	[cTOS-5-D22]">
      <seq>ttggatgaccttctacaacatacacgtgctatagatcggagatggcatgtcttgggattggggtacgactctggtgtcaaattgaatgaaattgagcaagcagctgtgattcattatgatggagttatgaaaccatggttagagattggactccagaagttcaagccgtactggaagaaacacgttaggtatgaacatccttttgtgcaacaatgcaatattcatgactaggaattttatcctttagcagtaggctgagttccatttcaccacaatcacgtagtgtaggaacccctcacgttcaccttattctttcacacattgatcccgcaatttttaacttgtaaagtccaacttttacgcccctcctgtccacgtttatttcctgctcagtggtcatagaaatttatcccacaatagcaataacttgggacctgatattggcatgtccctgagattcctgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="26520" stop="25454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26220" g_stop="25746" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E350600" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26220" e_stop="25746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATGACCTTCTACAAACATACACGTGCTATAGATCGGAGATGGCATGTCTTGGGATTGGGGTACGACTCTGGTGTCAAATTGAATGAAATTGAGCAAGCAGCTGTGATTCATTATGATGGAGTTATGAAACCATGGTTAGAGATTGGACTCCAGAAGTTCAAGCCGTACTGGAAGAAACACGTTAGGTATGAACATCCTTTTGTGCAACAATGCAATATTCATGACTAGGAATTTTATCCTTTAGCAGTAGGCTGAGTTCCATTTCACCACAATCACGTAGTGTAGGAACCCCTCACGTTCACCTTATTCTTTCACACATTGATCCCGCAATTTTTAACTTGTAAAGTCCAACTTTTACGCCCCTCCTGTCCACGTTTATTTCCTGCTCAGTGGTCATAGAAATTTATCCCACAATAGCAATAACTTGGGACCTGATATTGGCATGTCCCTGAGATTCCTGCAATGCTTGGA</genome_strand>
        <mrna_strand>TTGGATGACCTTCTACA-ACATACACGTGCTATAGATCGGAGATGGCATGTCTTGGGATTGGGGTACGACTCTGGTGTCAAATTGAATGAAATTGAGCAAGCAGCTGTGATTCATTATGATGGAGTTATGAAACCATGGTTAGAGATTGGACTCCAGAAGTTCAAGCCGTACTGGAAGAAACACGTTAGGTATGAACATCCTTTTGTGCAACAATGCAATATTCATGACTAGGAATTTTATCCTTTAGCAGTAGGCTGAGTTCCATTTCACCACAATCACGTAGTGTAGGAACCCCTCACGTTCACCTTATTCTTTCACACATTGATCCCGCAATTTTTAACTTGTAAAGTCCAACTTTTACGCCCCTCCTGTCCACGTTTATTTCCTGCTCAGTGGTCATAGAAATTTATCCCACAATAGCAATAACTTGGGACCTGATATTGGCATGTCCCTGAGATTCCTGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E354899" ref_strand="+" ref_description="SGN-E354899 	[cTOS-19-A11]">
      <seq>ttggatgaccttctacaacatacacgtgctatagatcggagatggcatgtcttgggattggggtacgactctggtgtcaaattgaatgaaattgagcaagcagctgtgattcattatgatggagttatgaaaccatggttagagattggactccagaagttcaagccgtactggaagaaacacgttaggtatgaacatccttttgtgcaacaatgcaatattcatgactaggaattttatcctttagcagtaggctgagttccatttcaccacaatcacgtagtgtaggaacccctcacgttcaccttattctttcacacattgatcccgcaatttttaacttgtaaagtccaacttttacgcccctcctgtccacgtttatttcctgctcagtggtcatagaaatttatcccacaatagcaataacttgggacctgatattggcatgtccctgagattcctgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="26520" stop="25454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26220" g_stop="25746" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E354899" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26220" e_stop="25746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATGACCTTCTACAAACATACACGTGCTATAGATCGGAGATGGCATGTCTTGGGATTGGGGTACGACTCTGGTGTCAAATTGAATGAAATTGAGCAAGCAGCTGTGATTCATTATGATGGAGTTATGAAACCATGGTTAGAGATTGGACTCCAGAAGTTCAAGCCGTACTGGAAGAAACACGTTAGGTATGAACATCCTTTTGTGCAACAATGCAATATTCATGACTAGGAATTTTATCCTTTAGCAGTAGGCTGAGTTCCATTTCACCACAATCACGTAGTGTAGGAACCCCTCACGTTCACCTTATTCTTTCACACATTGATCCCGCAATTTTTAACTTGTAAAGTCCAACTTTTACGCCCCTCCTGTCCACGTTTATTTCCTGCTCAGTGGTCATAGAAATTTATCCCACAATAGCAATAACTTGGGACCTGATATTGGCATGTCCCTGAGATTCCTGCAATGCTTGGA</genome_strand>
        <mrna_strand>TTGGATGACCTTCTACA-ACATACACGTGCTATAGATCGGAGATGGCATGTCTTGGGATTGGGGTACGACTCTGGTGTCAAATTGAATGAAATTGAGCAAGCAGCTGTGATTCATTATGATGGAGTTATGAAACCATGGTTAGAGATTGGACTCCAGAAGTTCAAGCCGTACTGGAAGAAACACGTTAGGTATGAACATCCTTTTGTGCAACAATGCAATATTCATGACTAGGAATTTTATCCTTTAGCAGTAGGCTGAGTTCCATTTCACCACAATCACGTAGTGTAGGAACCCCTCACGTTCACCTTATTCTTTCACACATTGATCCCGCAATTTTTAACTTGTAAAGTCCAACTTTTACGCCCCTCCTGTCCACGTTTATTTCCTGCTCAGTGGTCATAGAAATTTATCCCACAATAGCAATAACTTGGGACCTGATATTGGCATGTCCCTGAGATTCCTGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E357121" ref_strand="+" ref_description="SGN-E357121 	[cTOS-22-F14]">
      <seq>ttggatgaccttctacaacatacacgtgctatagatcggagatggcatgtcttgggattggggtacgactctggtgtcaaattgaatgaaattgagcaagcagctgtgattcattatgatggagttatgaaaccatggttagagattggactccagaagttcaagccgtactggaagaaacacgttaggtatgaacatccttttgtgcaacaatgcaatattcatgactaggaattttatcctttagcagtaggctgagttccatttcaccacaatcacgtagtgtaggaacccctcacgttcaccttattctttcacacattgatcccgcaatttttaacttgtaaagtccaacttttacgcccctcctgtccacgtttatttcctgctcagtggtcatagaaatttatcccacaatagcaataacttgggacctgatattggcatgtccctgagattcctgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="26520" stop="25454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26220" g_stop="25746" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E357121" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26220" e_stop="25746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATGACCTTCTACAAACATACACGTGCTATAGATCGGAGATGGCATGTCTTGGGATTGGGGTACGACTCTGGTGTCAAATTGAATGAAATTGAGCAAGCAGCTGTGATTCATTATGATGGAGTTATGAAACCATGGTTAGAGATTGGACTCCAGAAGTTCAAGCCGTACTGGAAGAAACACGTTAGGTATGAACATCCTTTTGTGCAACAATGCAATATTCATGACTAGGAATTTTATCCTTTAGCAGTAGGCTGAGTTCCATTTCACCACAATCACGTAGTGTAGGAACCCCTCACGTTCACCTTATTCTTTCACACATTGATCCCGCAATTTTTAACTTGTAAAGTCCAACTTTTACGCCCCTCCTGTCCACGTTTATTTCCTGCTCAGTGGTCATAGAAATTTATCCCACAATAGCAATAACTTGGGACCTGATATTGGCATGTCCCTGAGATTCCTGCAATGCTTGGA</genome_strand>
        <mrna_strand>TTGGATGACCTTCTACA-ACATACACGTGCTATAGATCGGAGATGGCATGTCTTGGGATTGGGGTACGACTCTGGTGTCAAATTGAATGAAATTGAGCAAGCAGCTGTGATTCATTATGATGGAGTTATGAAACCATGGTTAGAGATTGGACTCCAGAAGTTCAAGCCGTACTGGAAGAAACACGTTAGGTATGAACATCCTTTTGTGCAACAATGCAATATTCATGACTAGGAATTTTATCCTTTAGCAGTAGGCTGAGTTCCATTTCACCACAATCACGTAGTGTAGGAACCCCTCACGTTCACCTTATTCTTTCACACATTGATCCCGCAATTTTTAACTTGTAAAGTCCAACTTTTACGCCCCTCCTGTCCACGTTTATTTCCTGCTCAGTGGTCATAGAAATTTATCCCACAATAGCAATAACTTGGGACCTGATATTGGCATGTCCCTGAGATTCCTGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E272347" ref_strand="+" ref_description="SGN-E272347 	[cLEM-19-A15]">
      <seq>tactttgccctacaaaccgaggagcagaaactgggtaaccaacataaatttcagaatccagatctccaccacttcgctgttttctctgacaatgttttggcatgttctgcagttgtcaactcaactgtatcaactgctagggctccagagaagattgtgtttcatatagtgacggattctcttaacctaccagcaatgacaatgtggttcttgtcgaatcctcctggcaaagcaacaattcagatccagagcatagacatgtttgattggttactgaacaaggatactctgcagaagcaagagtctcttgatccaagatacacttctccactgaatcacctgcgcttctacctgcctgaaatttttccttatctcaacaagatagtgctccttgatcatgacgtggttgtgaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="28413" stop="26381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28113" g_stop="27973" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27972" i_stop="26956" i_length="1017">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26955" g_stop="26681" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="416" r_length="275" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E272347" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28113" e_stop="27973"/>
          <exon e_start="26955" e_stop="26681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTGCCCTACAAACCGAGGAGCAGAAACTACCTAACCAACATAAATTTCAGAATCCAGATCTCCACCACTTCGCTGTTTTCTCTGACAATGTTTTGGCATGTTCTGCAGTTGTCAACTCAACTGTATCAACTGCTAGGGTGAGCATCTCCCTAATTTTCTTATTCTTGGCTTTGAATTTTCTTTTTTTCAATTTCTTACTACTCCCTCTCTTTCAATTTATGTGTATTACTTTCCTTTAGTCTATTTTAAAAAGAAAGCAAATTTTTGTATTTAATTCTCCTCTTTAGTTCCATTATCTCACATGGCATGTTTAAGATCACAAGATTCAAAAGACATTTTTGGTGTATTACACACATCTTTAATTCAAGACCACAAGATTCAAAAATCTCTTTATTTTCTTGATCTCTGTGCCAGTCATACCATTTTAAGAAAATTAAGAGAAGGGAGTATATTTTTTATTCACGCTCTATTTTTTCCTTTTATGTTTTCTCATTGTTAATCTGCTGTTATCTTAAGATGATTAAGAATAGAACATAGGTATTTGGAGTATATGTCATTTTGCACATGGCCTTTAGAGGAAAATTTTAACATTTAGTATCTATGTTAACTGATGCTTACCTGTAAGCAGCTTTGGCTTTAGTGCGGAACAGAGTAATTCCAATTGTGCATATAAGTCCACTATCGACTTATGAGAACACATGCTATTATTTGTTGGTGTCCTCACTTCTGCAAATAGAATTCCAAGAACTAGTATGATTGTGGTATCATTATCATTTGTAACTTATCATGCAACTGTCATGTATGGAAGGGCTAAACTCTTATGATTTTGTAACAGTAGATGCAAGGAGCAACTATTGATCACTATATATATTTTGAAGACAAATTAAATAATCATGGTTATGCACAAATTTATACTATTGATTATTATAGATTTTACAACAACAACATTCCGAGTGTGATCCCATAGGGTGGGTCTGGGGAGGGTCGTAAACCTTACCCCTACCTCGTTAGAAAATCGTTTTCCGACAGATCCCTGGCTCGAACAAAGCATTTGAAAAAAGGGAATACGGAAACTATTACTATATATTTTGAAGACATAAATTAAATAATGGTGGTTATGCACAAATTTATGCGAGTGTTTATGTATTTGGCAGGCTCCAGAGAAGATTGTGTTTCATATAGTGACGGATTCTCTTAACCTACCAGCAATGACAATGTGGTTCTTGTCGAATCCTCCTGGCAAAGCAACAATTCAGATCCAGAGCATAGACATGTTTGATTGGTTACTGAACAAGGATACTCTGCAGAAGCAAGAGTCTCTTGATCCAAGATACACTTCTCCACTGAATCACCTGCGCTTCTACCTGCCTGAAATTTTTCCTTATCTCAACAAGATAGTGCTCCTTGATCATGACGTGGTTGTGAAAAG</genome_strand>
        <mrna_strand>TACTTTGCCCTACAAACCGAGGAGCAGAAACTGGGTAACCAACATAAATTTCAGAATCCAGATCTCCACCACTTCGCTGTTTTCTCTGACAATGTTTTGGCATGTTCTGCAGTTGTCAACTCAACTGTATCAACTGCTAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCAGAGAAGATTGTGTTTCATATAGTGACGGATTCTCTTAACCTACCAGCAATGACAATGTGGTTCTTGTCGAATCCTCCTGGCAAAGCAACAATTCAGATCCAGAGCATAGACATGTTTGATTGGTTACTGAACAAGGATACTCTGCAGAAGCAAGAGTCTCTTGATCCAAGATACACTTCTCCACTGAATCACCTGCGCTTCTACCTGCCTGAAATTTTTCCTTATCTCAACAAGATAGTGCTCCTTGATCATGACGTGGTTGTGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E251690" ref_strand="+" ref_description="SGN-E251690 	[cLEG-15-J10]">
      <seq>tgataagggccaaagcattcttgaattttgcaccggcaggtagtaactctaattttgtgaaagagataaagctacgaattaaagacttggaacgagctgctggtgaagtttcaaaagattctgatttgtctaggagggccatacagaagatgaaggctatgagtgcaaccctgtcgaaagccagtagattgttccctgattgctcggcaatggtgaaaaaacttcgtgcgatgacttataatgctgaggaacaacttcgagcgcaaaagaatcaagcttccttccttgaaaatcttgccggaagaactactccgaaaggccttcattgcctctccatgcggttaaccactgagtactttgccctacaaaccgaggagcagaaactacctaaccaacataaatttcagaatccagatctccaccacttcgctgttttctctgacaatgttttggcatgttctgcagttgtcaactcaactgtatcaactgctagggctccagagaagattgtgtttcatatagtgacggattctcttaacctaccagcaatgacaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="29604" stop="26592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29304" g_stop="29169" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29168" i_stop="28331" i_length="838">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28330" g_stop="27973" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="494" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27972" i_stop="26956" i_length="1017">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26955" g_stop="26892" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="558" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E251690" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29304" e_stop="29169"/>
          <exon e_start="28330" e_stop="27973"/>
          <exon e_start="26955" e_stop="26892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAAGGGCCAAAGCATTCTTGAATTTTGCACCGGCAGGTAGTAACTCTAATTTTGTGAAAGAGATAAAGCTACGAATTAAAGACTTGGAACGAGCTGCTGGTGAAGTTTCAAAAGATTCTGATTTGTCTAGGAGGTAAGATGATAATTCTTTTATCACTTTAATTCTTCGTAATACTGTAATAGCTATGACATCATCTCTTCGTAATAGCTTTGGTATCATCTCTTATTCGGACACAAGCTCAAACCTGGACACATAATGGAACCTGGCTGATTTGATATATGTTGGTTGCTCCACCGTCGCATAAATCTGCTTGGCTTGAGTAAATGGCTCTTTTGAGCTATTTTTTGTACCTTCTTTTTTTACAAGTGTGAGTTATGTTTTGTACTTATTGTGTCTGAAAGAGTATCCGGGAGAAGGTCGAAATGGTTAAATGAAATTGACAAATAACTTGGTGCTTAAGTTTATTATGTACACAAAAAGTGACTTAACTTGTTATTGGTCTATCAGTAGTTGACGAAAATTGGTTGGTCTGGTAACTAAGTGTTGAATGTTGGCAAGTGAATATGTTTTTTCTTAGTCTTGTCATTAAGTACTTTATGTATTTATTCTCTTTATGAACTTTTCCTATTTTTTAGTTCCAGACCCTACATAGTGGGATTTCACTGGGTTTTTTGTTGTCCTGTTTTTTAGTTTACTTTTTGGGCACAGTTATTAATCTGTGAAGGGATGTTTGGATGTCTTGAGATAAAAATGGGTTGGGGAAGTGACAATAAGGCTAATTTTGTAAAAGGGAAGTCGTCCGACTTTTTAAATGCTAAAATATGGGAAAAGTATTGAAGAGTGTAGAGGAAAGCTTTTACTTTTGGAAAGTTGATAGAATCTTTAAAATAGGGAAGTATACTATTTTGATTGGAAACTAGGGAGCAGTTAAATGATGTATGTATAATCTAAGAACAGTTATCATTTTTAGGGCCATACAGAAGATGAAGGCTATGAGTGCAACCCTGTCGAAAGCCAGTAGATTGTTCCCTGATTGCTCGGCAATGGTGAAAAAACTTCGTGCGATGACTTATAATGCTGAGGAACAACTTCGAGCGCAAAAGAATCAAGCTTCCTTCCTTGAAAATCTTGCCGGAAGAACTACTCCGAAAGGCCTTCATTGCCTCTCCATGCGGTTAACCACTGAGTACTTTGCCCTACAAACCGAGGAGCAGAAACTACCTAACCAACATAAATTTCAGAATCCAGATCTCCACCACTTCGCTGTTTTCTCTGACAATGTTTTGGCATGTTCTGCAGTTGTCAACTCAACTGTATCAACTGCTAGGGTGAGCATCTCCCTAATTTTCTTATTCTTGGCTTTGAATTTTCTTTTTTTCAATTTCTTACTACTCCCTCTCTTTCAATTTATGTGTATTACTTTCCTTTAGTCTATTTTAAAAAGAAAGCAAATTTTTGTATTTAATTCTCCTCTTTAGTTCCATTATCTCACATGGCATGTTTAAGATCACAAGATTCAAAAGACATTTTTGGTGTATTACACACATCTTTAATTCAAGACCACAAGATTCAAAAATCTCTTTATTTTCTTGATCTCTGTGCCAGTCATACCATTTTAAGAAAATTAAGAGAAGGGAGTATATTTTTTATTCACGCTCTATTTTTTCCTTTTATGTTTTCTCATTGTTAATCTGCTGTTATCTTAAGATGATTAAGAATAGAACATAGGTATTTGGAGTATATGTCATTTTGCACATGGCCTTTAGAGGAAAATTTTAACATTTAGTATCTATGTTAACTGATGCTTACCTGTAAGCAGCTTTGGCTTTAGTGCGGAACAGAGTAATTCCAATTGTGCATATAAGTCCACTATCGACTTATGAGAACACATGCTATTATTTGTTGGTGTCCTCACTTCTGCAAATAGAATTCCAAGAACTAGTATGATTGTGGTATCATTATCATTTGTAACTTATCATGCAACTGTCATGTATGGAAGGGCTAAACTCTTATGATTTTGTAACAGTAGATGCAAGGAGCAACTATTGATCACTATATATATTTTGAAGACAAATTAAATAATCATGGTTATGCACAAATTTATACTATTGATTATTATAGATTTTACAACAACAACATTCCGAGTGTGATCCCATAGGGTGGGTCTGGGGAGGGTCGTAAACCTTACCCCTACCTCGTTAGAAAATCGTTTTCCGACAGATCCCTGGCTCGAACAAAGCATTTGAAAAAAGGGAATACGGAAACTATTACTATATATTTTGAAGACATAAATTAAATAATGGTGGTTATGCACAAATTTATGCGAGTGTTTATGTATTTGGCAGGCTCCAGAGAAGATTGTGTTTCATATAGTGACGGATTCTCTTAACCTACCAGCAATGACAATGT</genome_strand>
        <mrna_strand>TGATAAGGGCCAAAGCATTCTTGAATTTTGCACCGGCAGGTAGTAACTCTAATTTTGTGAAAGAGATAAAGCTACGAATTAAAGACTTGGAACGAGCTGCTGGTGAAGTTTCAAAAGATTCTGATTTGTCTAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCATACAGAAGATGAAGGCTATGAGTGCAACCCTGTCGAAAGCCAGTAGATTGTTCCCTGATTGCTCGGCAATGGTGAAAAAACTTCGTGCGATGACTTATAATGCTGAGGAACAACTTCGAGCGCAAAAGAATCAAGCTTCCTTCCTTGAAAATCTTGCCGGAAGAACTACTCCGAAAGGCCTTCATTGCCTCTCCATGCGGTTAACCACTGAGTACTTTGCCCTACAAACCGAGGAGCAGAAACTACCTAACCAACATAAATTTCAGAATCCAGATCTCCACCACTTCGCTGTTTTCTCTGACAATGTTTTGGCATGTTCTGCAGTTGTCAACTCAACTGTATCAACTGCTAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCAGAGAAGATTGTGTTTCATATAGTGACGGATTCTCTTAACCTACCAGCAATGACAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E322548" ref_strand="+" ref_description="SGN-E322548 	[cTOB-26-N9]">
      <seq>agaccaaaagaggtgcttcagaatgtacagtctcatccacggagggtattggatgagagggtgaaggagattaaagatcagctgataagggccaaagcattcttgaattttgcaccggcaggtagtaactctaattttgtgaaagagataaagctacgaattaaagacttggaacgagctgctggtgaagtttcaaaagattctgatttgtctaggagggccatacagaagatgaaggctatgagtgcaaccctgtcgaaagccagtagattgttccctgattgctcggcaatggtgaaaaaacttcgtgcgatgacttataatgctgaggaacaacttcgagcgcaaaagaatcaagcttccttccttgaaaatcttgccggaagaactactccgaaaggccttcattgcctctccatgcggttaaccactgagtactttgccctacaaaccgaggagcagaaactacctaaccaacataaatttcagaatccagatctccaccacttcgctgttttctctgacaatgttttggcatgttctgcagttgtcaactcaactgtatcaactgctanggctccagagaagattgtgtttcatatagtgacggattctcttaacctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="29686" stop="26607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29386" g_stop="29169" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29168" i_stop="28331" i_length="838">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28330" g_stop="27973" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="576" r_length="358" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27972" i_stop="26956" i_length="1017">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26955" g_stop="26907" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="625" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E322548" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29386" e_stop="29169"/>
          <exon e_start="28330" e_stop="27973"/>
          <exon e_start="26955" e_stop="26907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCAAAAGAGGTGCTTCAGAATGTACAGTCTCATCCACGGAGGGTATTGGATGAGAGGGTGAAGGAGATTAAAGATCAGCTGATAAGGGCCAAAGCATTCTTGAATTTTGCACCGGCAGGTAGTAACTCTAATTTTGTGAAAGAGATAAAGCTACGAATTAAAGACTTGGAACGAGCTGCTGGTGAAGTTTCAAAAGATTCTGATTTGTCTAGGAGGTAAGATGATAATTCTTTTATCACTTTAATTCTTCGTAATACTGTAATAGCTATGACATCATCTCTTCGTAATAGCTTTGGTATCATCTCTTATTCGGACACAAGCTCAAACCTGGACACATAATGGAACCTGGCTGATTTGATATATGTTGGTTGCTCCACCGTCGCATAAATCTGCTTGGCTTGAGTAAATGGCTCTTTTGAGCTATTTTTTGTACCTTCTTTTTTTACAAGTGTGAGTTATGTTTTGTACTTATTGTGTCTGAAAGAGTATCCGGGAGAAGGTCGAAATGGTTAAATGAAATTGACAAATAACTTGGTGCTTAAGTTTATTATGTACACAAAAAGTGACTTAACTTGTTATTGGTCTATCAGTAGTTGACGAAAATTGGTTGGTCTGGTAACTAAGTGTTGAATGTTGGCAAGTGAATATGTTTTTTCTTAGTCTTGTCATTAAGTACTTTATGTATTTATTCTCTTTATGAACTTTTCCTATTTTTTAGTTCCAGACCCTACATAGTGGGATTTCACTGGGTTTTTTGTTGTCCTGTTTTTTAGTTTACTTTTTGGGCACAGTTATTAATCTGTGAAGGGATGTTTGGATGTCTTGAGATAAAAATGGGTTGGGGAAGTGACAATAAGGCTAATTTTGTAAAAGGGAAGTCGTCCGACTTTTTAAATGCTAAAATATGGGAAAAGTATTGAAGAGTGTAGAGGAAAGCTTTTACTTTTGGAAAGTTGATAGAATCTTTAAAATAGGGAAGTATACTATTTTGATTGGAAACTAGGGAGCAGTTAAATGATGTATGTATAATCTAAGAACAGTTATCATTTTTAGGGCCATACAGAAGATGAAGGCTATGAGTGCAACCCTGTCGAAAGCCAGTAGATTGTTCCCTGATTGCTCGGCAATGGTGAAAAAACTTCGTGCGATGACTTATAATGCTGAGGAACAACTTCGAGCGCAAAAGAATCAAGCTTCCTTCCTTGAAAATCTTGCCGGAAGAACTACTCCGAAAGGCCTTCATTGCCTCTCCATGCGGTTAACCACTGAGTACTTTGCCCTACAAACCGAGGAGCAGAAACTACCTAACCAACATAAATTTCAGAATCCAGATCTCCACCACTTCGCTGTTTTCTCTGACAATGTTTTGGCATGTTCTGCAGTTGTCAACTCAACTGTATCAACTGCTAGGGTGAGCATCTCCCTAATTTTCTTATTCTTGGCTTTGAATTTTCTTTTTTTCAATTTCTTACTACTCCCTCTCTTTCAATTTATGTGTATTACTTTCCTTTAGTCTATTTTAAAAAGAAAGCAAATTTTTGTATTTAATTCTCCTCTTTAGTTCCATTATCTCACATGGCATGTTTAAGATCACAAGATTCAAAAGACATTTTTGGTGTATTACACACATCTTTAATTCAAGACCACAAGATTCAAAAATCTCTTTATTTTCTTGATCTCTGTGCCAGTCATACCATTTTAAGAAAATTAAGAGAAGGGAGTATATTTTTTATTCACGCTCTATTTTTTCCTTTTATGTTTTCTCATTGTTAATCTGCTGTTATCTTAAGATGATTAAGAATAGAACATAGGTATTTGGAGTATATGTCATTTTGCACATGGCCTTTAGAGGAAAATTTTAACATTTAGTATCTATGTTAACTGATGCTTACCTGTAAGCAGCTTTGGCTTTAGTGCGGAACAGAGTAATTCCAATTGTGCATATAAGTCCACTATCGACTTATGAGAACACATGCTATTATTTGTTGGTGTCCTCACTTCTGCAAATAGAATTCCAAGAACTAGTATGATTGTGGTATCATTATCATTTGTAACTTATCATGCAACTGTCATGTATGGAAGGGCTAAACTCTTATGATTTTGTAACAGTAGATGCAAGGAGCAACTATTGATCACTATATATATTTTGAAGACAAATTAAATAATCATGGTTATGCACAAATTTATACTATTGATTATTATAGATTTTACAACAACAACATTCCGAGTGTGATCCCATAGGGTGGGTCTGGGGAGGGTCGTAAACCTTACCCCTACCTCGTTAGAAAATCGTTTTCCGACAGATCCCTGGCTCGAACAAAGCATTTGAAAAAAGGGAATACGGAAACTATTACTATATATTTTGAAGACATAAATTAAATAATGGTGGTTATGCACAAATTTATGCGAGTGTTTATGTATTTGGCAGGCTCCAGAGAAGATTGTGTTTCATATAGTGACGGATTCTCTTAACCTAC</genome_strand>
        <mrna_strand>AGACCAAAAGAGGTGCTTCAGAATGTACAGTCTCATCCACGGAGGGTATTGGATGAGAGGGTGAAGGAGATTAAAGATCAGCTGATAAGGGCCAAAGCATTCTTGAATTTTGCACCGGCAGGTAGTAACTCTAATTTTGTGAAAGAGATAAAGCTACGAATTAAAGACTTGGAACGAGCTGCTGGTGAAGTTTCAAAAGATTCTGATTTGTCTAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCATACAGAAGATGAAGGCTATGAGTGCAACCCTGTCGAAAGCCAGTAGATTGTTCCCTGATTGCTCGGCAATGGTGAAAAAACTTCGTGCGATGACTTATAATGCTGAGGAACAACTTCGAGCGCAAAAGAATCAAGCTTCCTTCCTTGAAAATCTTGCCGGAAGAACTACTCCGAAAGGCCTTCATTGCCTCTCCATGCGGTTAACCACTGAGTACTTTGCCCTACAAACCGAGGAGCAGAAACTACCTAACCAACATAAATTTCAGAATCCAGATCTCCACCACTTCGCTGTTTTCTCTGACAATGTTTTGGCATGTTCTGCAGTTGTCAACTCAACTGTATCAACTGCTANG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCAGAGAAGATTGTGTTTCATATAGTGACGGATTCTCTTAACCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E249774" ref_strand="+" ref_description="SGN-E249774 	[cLEF-57-B23]">
      <seq>tgcacttcacgggtacacacgaacatggcaccccccaatcaatctccgatttcatcgccattctttaatcaaaattaaatttttttaattaaaaaaaaacccaaatcgattccgtttgacctagaagacaaaaaaccagaaaaaaccctagtaccatttttttttttggtatcaggaactgtgtattttgatataccctttattgaatctgaatcgatccaaaaaccccaagtgttgtttgagttaattacatgtcttagatgaggtttactagaagatttacgaggatttttattatcctctgtttgattgctgtttttgttacaactccaatcttgttgttttcttcacataggttgattcatcttggttctgatgcatcgaaggagtttgttggagatttatccattcttaagcacaggatagaggttcaggcgcttaatgcagtccaacaggtgctataaattctatataagttcttccaactgtaaacatgcacttgaattgaacttttgtttgcaaacctttttctgctttttggtttaggaagaagttgaaaccctcaaagaaccaatcttggatgtctaccgagatggaaaccaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="32972" stop="30270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32672" g_stop="32295" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32294" i_stop="32183" i_length="112">
            <donor d_prob="0.406" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32182" g_stop="32148" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="413" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32147" i_stop="30763" i_length="1385">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30762" g_stop="30570" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="606" r_length="193" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E249774" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32672" e_stop="32295"/>
          <exon e_start="32182" e_stop="32148"/>
          <exon e_start="30762" e_stop="30570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACTTCACGGGTACACACGAACATGGCACCCCCCAATCAATCTCCGATTTCATCGCCATTCTTTAATCAAAATTAAATTTTTTTAATTAAAAAAAAACCCAAATCGATTCCGTTTGACCTAGAAGACAAAAAACCAGAAAAAACCCTAGTACCATTTTTTTTTTTGGTATCAGGAACTGTGTATTTTGATATACCCTTTATTGAATCTGAATCGATCCAAAAACCCCAAGTGTTGTTTGAGTTAATTACATGTCTTAGATGAGGTTTACTAGAAGATTTACGAGGATTTTTATTATCCTCTGTTTGATTGCTGTTTTTGTTACAACTCCAATCTTGTTGTTTTCTTCACATAGGTTGATTCATCTTGGTTCTGATGGTATGATTTTGATGTCTATGCATTTTCAAGTTGTTTGGGTTTGTGGGGTTCATTTTGTTTTTGCTAATTTGATTTGTTTGGTTGGATTTTGTTCACATTTGGGTTGTTGCAGCATCGAAGGAGTTTGTTGGAGATTTATCCATTCTTGTAAGATTTCTACTGTTACTGATTACTGTTTATTGCACTTCGGTTGTTGTATTATTTTGTGGTAGTGACTGTTCCTTTTTCAGTGTGTGTTGTCATGCTTTCATTAGTTTCAAACTGCTTTCCAATGCTTTACTTGAGATGAGATGTAGGGGTAAGGTTTGCTTATACAATACTCTCCTCAGACCCCACTCGTGGGATTACACCGGGTGTGTCGCTGTTGTAAGATTTCTTTTCCTTTATTCAGTTTTTGTTGCGGGTATTGCTCGTTTTGGTGTATGTTGTTGAGAGGAAGTAGATAAAGCAGCATAGATTATTTTGAACATTTGGTTTTACTATTTTACAATGCTTTTGCTAGTAATCTGTGGTAGCTTTTTGAGGGGAAGTAAATAAAGCAATATAGATTATTTTGAACATTTGATTTTTCTATTTTACAATGTGTTTGCTAGTAATCAGTAAGAGCTTTTTTTTTTTAATAGAAGAAGTTGTTTTTTGGGGACCCTTGTTGTTTGCCTATTTTCAAGCTGGTGTAAAAGATAAAGCTGTTAATGGTCCCCATACTTCCATAAGTTCCATTTACACTGTCTATTTGTTTTGGTATATGCTGCTGAGGGGAAGTTGATAAAGAAGCATGGATTGTTTTGACATTTGATTTTACTCGTGTAAATTGTGTTCTCTAGTAATTTATAAGAGCTTCTTCCTTTTTTATAGCTGAAGTTAGTTCTTTGGTACCCTTGTTGCTTGTAGATCAAGCTGTTAATGGTTCCCATACTTCCATTACCCTGCCCTTTTGTTTTGGTATATGTTGCTGAGGGGAAGTTGATAAAGAAGCATAGATTGTTTTAAAACGTTTGATTTTACTCGTGTAAATTTTGTTTTCTAGTAATTCGTAAGAGCTTCTTCTTTTTTTATAGCTGAAGTTAGTTTTTTGGTACCCTCGTTGTTTGCATAATTTGGACTTGGTGTAAAAGATCAAGCTTTAATGGTTCCCATACTTCCATTACCCTGTTCCTTTGTAAAGGCTAGGATGCAGAGTTTTCTGTGAGAAGAATTATCTACTTATTGCTTATGTCAGTTTTTGACTGGACCCCGAGTTTTATGATGTTTGTTAACTCATATAGAGTCTATTTTTTTAGTAGTGGTGATGATCAAAATGTCGAAGTAGTAGCCGTTAACAAGTTCGTTTGATAGAAAAGATCATATCAAAGTTAAAAATTTGAATGCTTTGGAAGTTCTAAAAAGATGGAAAGAGTGTCTTGTAAATTTAAACAAATGGAGTCTATTGTATGGGATCTGATTGAGATTTTTCTTATTTGGGTTTTGATTGGAATTGATGGATTATATTGTTATGATATGATCTGACTGATATTTCTATTTCTCCATTTCAGAAGCACAGGATAGAGGTTCAGGCGCTTAATGCAGTCCAACAGGTGCTATAAATTCTATATAAGTTCTTCCAACTGTAAACATCCACTTGAATTGAACTTTTGTTTGCAAACCTTTTTCTGCTTTTTGGTTTAGGAAGAAGTTGAAACCCTCAAAGAACCAATCTTGGATGTCTACCGAGATGGAAACCAAATT</genome_strand>
        <mrna_strand>TGCACTTCACGGGTACACACGAACATGGCACCCCCCAATCAATCTCCGATTTCATCGCCATTCTTTAATCAAAATTAAATTTTTTTAATTAAAAAAAAACCCAAATCGATTCCGTTTGACCTAGAAGACAAAAAACCAGAAAAAACCCTAGTACCATTTTTTTTTTTGGTATCAGGAACTGTGTATTTTGATATACCCTTTATTGAATCTGAATCGATCCAAAAACCCCAAGTGTTGTTTGAGTTAATTACATGTCTTAGATGAGGTTTACTAGAAGATTTACGAGGATTTTTATTATCCTCTGTTTGATTGCTGTTTTTGTTACAACTCCAATCTTGTTGTTTTCTTCACATAGGTTGATTCATCTTGGTTCTGATG................................................................................................................CATCGAAGGAGTTTGTTGGAGATTTATCCATTCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCACAGGATAGAGGTTCAGGCGCTTAATGCAGTCCAACAGGTGCTATAAATTCTATATAAGTTCTTCCAACTGTAAACATGCACTTGAATTGAACTTTTGTTTGCAAACCTTTTTCTGCTTTTTGGTTTAGGAAGAAGTTGAAACCCTCAAAGAACCAATCTTGGATGTCTACCGAGATGGAAACCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E323938" ref_strand="+" ref_description="SGN-E323938 	[cTOC-3-E8]">
      <seq>tcacgggtacacacgaacatggcaccccccaatcaatctccgatttcatcgccattctttaatcaaaattaaatttttttaattaaaaaaaaacccaaatcgattccgtttgacctagaagacaaaaaaccagaaaaaaccctagtaccatttttttttttggtatcaggaactgtgtattttgatataccctttattgaatctgaatcgatccaaaaaccccaagtgttgtttgagttaattacatgtcttagatgaggtttactagaagatttacgaggatttttattatcctctgtttgattgctgtttttgttacaactccaatcttgttgttttcttcacataggttgattcatcttggttctgatgcatcgaaggagtttgttggagatttatccattcttaagcacaggatagaggttcaggcgcttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="32966" stop="30433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32666" g_stop="32295" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32294" i_stop="32183" i_length="112">
            <donor d_prob="0.406" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32182" g_stop="32148" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="407" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32147" i_stop="30763" i_length="1385">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30762" g_stop="30733" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="437" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E323938" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32666" e_stop="32295"/>
          <exon e_start="32182" e_stop="32148"/>
          <exon e_start="30762" e_stop="30733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGGGTACACACGAACATGGCACCCCCCAATCAATCTCCGATTTCATCGCCATTCTTTAATCAAAATTAAATTTTTTTAATTAAAAAAAAACCCAAATCGATTCCGTTTGACCTAGAAGACAAAAAACCAGAAAAAACCCTAGTACCATTTTTTTTTTTGGTATCAGGAACTGTGTATTTTGATATACCCTTTATTGAATCTGAATCGATCCAAAAACCCCAAGTGTTGTTTGAGTTAATTACATGTCTTAGATGAGGTTTACTAGAAGATTTACGAGGATTTTTATTATCCTCTGTTTGATTGCTGTTTTTGTTACAACTCCAATCTTGTTGTTTTCTTCACATAGGTTGATTCATCTTGGTTCTGATGGTATGATTTTGATGTCTATGCATTTTCAAGTTGTTTGGGTTTGTGGGGTTCATTTTGTTTTTGCTAATTTGATTTGTTTGGTTGGATTTTGTTCACATTTGGGTTGTTGCAGCATCGAAGGAGTTTGTTGGAGATTTATCCATTCTTGTAAGATTTCTACTGTTACTGATTACTGTTTATTGCACTTCGGTTGTTGTATTATTTTGTGGTAGTGACTGTTCCTTTTTCAGTGTGTGTTGTCATGCTTTCATTAGTTTCAAACTGCTTTCCAATGCTTTACTTGAGATGAGATGTAGGGGTAAGGTTTGCTTATACAATACTCTCCTCAGACCCCACTCGTGGGATTACACCGGGTGTGTCGCTGTTGTAAGATTTCTTTTCCTTTATTCAGTTTTTGTTGCGGGTATTGCTCGTTTTGGTGTATGTTGTTGAGAGGAAGTAGATAAAGCAGCATAGATTATTTTGAACATTTGGTTTTACTATTTTACAATGCTTTTGCTAGTAATCTGTGGTAGCTTTTTGAGGGGAAGTAAATAAAGCAATATAGATTATTTTGAACATTTGATTTTTCTATTTTACAATGTGTTTGCTAGTAATCAGTAAGAGCTTTTTTTTTTTAATAGAAGAAGTTGTTTTTTGGGGACCCTTGTTGTTTGCCTATTTTCAAGCTGGTGTAAAAGATAAAGCTGTTAATGGTCCCCATACTTCCATAAGTTCCATTTACACTGTCTATTTGTTTTGGTATATGCTGCTGAGGGGAAGTTGATAAAGAAGCATGGATTGTTTTGACATTTGATTTTACTCGTGTAAATTGTGTTCTCTAGTAATTTATAAGAGCTTCTTCCTTTTTTATAGCTGAAGTTAGTTCTTTGGTACCCTTGTTGCTTGTAGATCAAGCTGTTAATGGTTCCCATACTTCCATTACCCTGCCCTTTTGTTTTGGTATATGTTGCTGAGGGGAAGTTGATAAAGAAGCATAGATTGTTTTAAAACGTTTGATTTTACTCGTGTAAATTTTGTTTTCTAGTAATTCGTAAGAGCTTCTTCTTTTTTTATAGCTGAAGTTAGTTTTTTGGTACCCTCGTTGTTTGCATAATTTGGACTTGGTGTAAAAGATCAAGCTTTAATGGTTCCCATACTTCCATTACCCTGTTCCTTTGTAAAGGCTAGGATGCAGAGTTTTCTGTGAGAAGAATTATCTACTTATTGCTTATGTCAGTTTTTGACTGGACCCCGAGTTTTATGATGTTTGTTAACTCATATAGAGTCTATTTTTTTAGTAGTGGTGATGATCAAAATGTCGAAGTAGTAGCCGTTAACAAGTTCGTTTGATAGAAAAGATCATATCAAAGTTAAAAATTTGAATGCTTTGGAAGTTCTAAAAAGATGGAAAGAGTGTCTTGTAAATTTAAACAAATGGAGTCTATTGTATGGGATCTGATTGAGATTTTTCTTATTTGGGTTTTGATTGGAATTGATGGATTATATTGTTATGATATGATCTGACTGATATTTCTATTTCTCCATTTCAGAAGCACAGGATAGAGGTTCAGGCGCTTAAT</genome_strand>
        <mrna_strand>TCACGGGTACACACGAACATGGCACCCCCCAATCAATCTCCGATTTCATCGCCATTCTTTAATCAAAATTAAATTTTTTTAATTAAAAAAAAACCCAAATCGATTCCGTTTGACCTAGAAGACAAAAAACCAGAAAAAACCCTAGTACCATTTTTTTTTTTGGTATCAGGAACTGTGTATTTTGATATACCCTTTATTGAATCTGAATCGATCCAAAAACCCCAAGTGTTGTTTGAGTTAATTACATGTCTTAGATGAGGTTTACTAGAAGATTTACGAGGATTTTTATTATCCTCTGTTTGATTGCTGTTTTTGTTACAACTCCAATCTTGTTGTTTTCTTCACATAGGTTGATTCATCTTGGTTCTGATG................................................................................................................CATCGAAGGAGTTTGTTGGAGATTTATCCATTCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCACAGGATAGAGGTTCAGGCGCTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E263622" ref_strand="+" ref_description="SGN-E263622 	[cLEG-60-J8]">
      <seq>ttttattttcaacaaaattatcacaaagtcgtggctttttacactcttttcacaaaagggtgtctttttcttcttcattcttgtctgtcagatgtttttctgctgtttcacaaaagcctctcagatatgctgttcttggtgctggatttgctggattgtctgtggtttggcatttgttgcaacaaacttcagaggaatcaaatttttgcatagacatatatgatgaagttggcattggtggaggtgcatctggaatgtctggtggactccttcatccctattcccccaaagttaagcttctgtggcggggagaagagtgctggaaagaaagtttaaagcttctaaatgttgctgaagatgctcgatcttccaagtccttagacatggttatgcctaaaactgggctaaaagaaggtgactttatagtcaggagaagcggaatcgtgagaccggtgctctctgcgaaaaatatgcgcatgatgaatgataatgctcaaaactgcattgccagctgcagaattgagtcgatccacaaggatgctgcacaaaagcttgtacctgaattgtgtgtgcccctggacttagccttccatatgcctgaagccgtgaatgttaatcctcagaattatcttgaggctctctacttagcatgcaaaacttttgtgaaatccaagtgcagttttggcatttcatgtaaagagttaaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="36752" stop="40194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37052" g_stop="37175" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37176" i_stop="37264" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37265" g_stop="37322" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="182" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37323" i_stop="38299" i_length="977">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.265" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38300" g_stop="38408" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="291" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38409" i_stop="38566" i_length="158">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38567" g_stop="38711" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="436" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38712" i_stop="39441" i_length="730">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39442" g_stop="39493" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="488" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39494" i_stop="39578" i_length="85">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39579" g_stop="39725" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="635" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39726" i_stop="39819" i_length="94">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39820" g_stop="39894" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="710" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E263622" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37052" e_stop="37175"/>
          <exon e_start="37265" e_stop="37322"/>
          <exon e_start="38300" e_stop="38408"/>
          <exon e_start="38567" e_stop="38711"/>
          <exon e_start="39442" e_stop="39493"/>
          <exon e_start="39579" e_stop="39725"/>
          <exon e_start="39820" e_stop="39894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTTTCAACAAAATTATCACAAAGTCGTGGCTTTTTACACTCTTTTCACAAAAGGGTGTCTTTTTCTTCTTCATTCTTGTCTGTCAGATGTTTTTCTGCTGTTTCACAAAAGCCTCTCAGGTTAGTAAATAAGCCATATATAAATTGGTTTTTTCTTCTTTTTTTTTTTCCTGACTTAATGTTTTGTTTGGAATTGGATTTATATTCAGATATGCTGTTCTTGGTGCTGGATTTGCTGGATTGTCTGTGGTTTGGCATTTGTTGCAAGTATCCCCAATTCCCTACTTTGTCTTTACATATAGTTATTGCCTATGGAGTTCTTCTTGCACTTTATTAGGAGACAACAAAGTTAATAACTTTTGCATTAATCCTAAGGTGAAAAGGCTTTTAAGTTATAATGCTAGGCAGGGGCGGAACCAGGTAGCGCCAAAAGAGTTATCCTAACCCCACGGAAATTACATTGTTTAAGCATGTTTAGATTATGTTTTTTGATGTACATTTAGTAAACCCCTTTGGTTTTTCGTATGTTTACTTTATATTTTGAACGCACTGAATGAAACCAATGCTGTTAGTTTATGTTAGCTAATTACATGTAATTGTTTAACTAAGTAGATTGGTAACCTTAGAAATAGGGTAATTAATTTGTAAAATATATCTGGAGTATATGTATTTAGTAGGCATTTGGACATGAATTGAGTGATATTGGTAAAATATTGTATTTTAAGTTGAGTTAAAAATTGGTATTTCGAAGTTGAAGTTGTGTTTGAACATGTATTTCACTTGAAAATATTTTGAAGTTTCCTGGCGGGAAAATGAGTTCTCCTCTATCGGAAACAACCTTTCTATCCCACAAAGATAGGGTAGAGTCTGCATAGCCCTCCACAGACGCTACTTGTGGTAGGTATGTTGTTGTTGTCCATGGGAAAATTTCTCTGCACCACTTTTTCAAGTTTGGAGTAAAAACTGAAACAATGTTTAACCAAACAGGTTTTTGTGGATTTTTTTTGAGAAGAGGCAAAAAAATAAGTTGTCCAAATGGGCCCGATCATTCTTTTTAAAAATTCGTTTTATCCAAGTCTAGAAAATCCTTATACTATTAGCATATATAACTTAATTCCGTTGACAGATTAGTTTTATCTGTGAGTCTTAATGCCAAGTTACATATGGCAGCTTCTTTTTTCCTTTTCTATTCAATTAGCATAGGCCGCTAATTACAGCTGCTGCATCTTTTTTGTGTTGCATAGCAAACTTCAGAGGAATCAAATTTTTGCATAGACATATATGATGAAGTTGGCATTGGTGGAGGTGCATCTGGAATGTCTGGTGGACTCCTTCATCCCTATTCCCCCAAAGGTACATGCGAACGGTTTTTTATCAGGAGGAGACAACTCATTGAACTTCAAAGTTCTTCCTTCAAATTAGTTCCATTTATTCGTCTCTTAGCATTCACTTAAAGTAAAGGAATTTATTTTGATATAATCCCTTTCTGAGATTTAACTCACAATTTGCAGTTAAGCTTCTGTGGCGGGGAGAAGAGTGCTGGAAAGAAAGTTTAAAGCTTCTAAATGTTGCTGAAGATGCTCGATCTTCCAAGTCCTTAGACATGGTTATGCCTAAAACTGGGCTAAAAGAAGGTGACTTTATAGTCAGGAGAAGGTTAGTAGTATAAAACATGCAATATGTGAACTGCTAGGACGTTTCTCTCTCTCTCTCTCTCTCTTTTTAATAATAATAAGATCTCATTGATGTTTGCGCAAAAATAGAATACATTGAATATAATACCAAAATGTAGAAAACTTAGAAAAGATATGTTTTTCTAAAAACAGCACACAAGTCTTATGTACCTACAGGGATCTTATGGGGGCACCTAAAGAGAATAAGGGATAAGAGGCTAATCCTCACCTGTTCTGCTAAGACATTTGGTATATAATTTTGGTTATATTGGTAATAAATTCAAATTCTAGATGTTAAAATGTGATTCCTTTTCTGTTTGATGTTAGTATTTTCAGTTTAAATTACTGACAAAAAAGTTTAGTTTAAATAATTACTGTTCCGCCCTGCGAAAAATTGCTTTGACATCCATTTATCTTTAGCATCAGATAAAAAAAACATATCATTCTATTAGCAAATCGCTTGTTTCTGTTAACTTGTGTGTTCTGCAGTAGTCATCACTCGTGATTGAACTGCAGTAGTTTATCTGAGCTTACAAGTGAACCTTTTCTTTCTTTAAATATGTTCACTTCCACAAGTTAGAAACTGTCATGTACACTTAACCCACTCCCCTATCTTTTGGTCCTTCATTGTGCTGATACTTTCTTTGTACTATATGGAAGAGGTATAACCATCTTTTTACAGTCTAAAAATATTAATTTTGAATGATCAACAGCGGAATCGTGAGACCGGTGCTCTCTGCGAAAAATATGCGCATGATGAATGATGTGAGTGCATCAACTTATTACATGCGACTAGAAACTTATATGTAATTTCATGATTATGGGTATTTGTCTTCTTTTCCTTGAGTAGAATGCTCAAAACTGCATTGCCAGCTGCAGAATTGAGTCGATCCACAAGGATGCTGCACAAAAGCTTGTACCTGAATTGTGTGTGCCCCTGGACTTAGCCTTCCATATGCCTGAAGCCGTGAATGTTAATCCTCAGAATTATCTTGAGGTTTGAAGGGAGAAATCTTGTAACTATAGAACTCTGAATAGGTCTTTTTCCTTTATACCATTAAAGTTTTTCTTACTTTTTGATTATCTTCCAGGCTCTCTACTTAGCATGCAAAACTTTTGTGAAATCCAAGTGCAGTTTTGGCATTTCATGTAAAGAGTTAAATTTG</genome_strand>
        <mrna_strand>TTTTATTTTCAACAAAATTATCACAAAGTCGTGGCTTTTTACACTCTTTTCACAAAAGGGTGTCTTTTTCTTCTTCATTCTTGTCTGTCAGATGTTTTTCTGCTGTTTCACAAAAGCCTCTCAG.........................................................................................ATATGCTGTTCTTGGTGCTGGATTTGCTGGATTGTCTGTGGTTTGGCATTTGTTGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACTTCAGAGGAATCAAATTTTTGCATAGACATATATGATGAAGTTGGCATTGGTGGAGGTGCATCTGGAATGTCTGGTGGACTCCTTCATCCCTATTCCCCCAAAG..............................................................................................................................................................TTAAGCTTCTGTGGCGGGGAGAAGAGTGCTGGAAAGAAAGTTTAAAGCTTCTAAATGTTGCTGAAGATGCTCGATCTTCCAAGTCCTTAGACATGGTTATGCCTAAAACTGGGCTAAAAGAAGGTGACTTTATAGTCAGGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAATCGTGAGACCGGTGCTCTCTGCGAAAAATATGCGCATGATGAATGAT.....................................................................................AATGCTCAAAACTGCATTGCCAGCTGCAGAATTGAGTCGATCCACAAGGATGCTGCACAAAAGCTTGTACCTGAATTGTGTGTGCCCCTGGACTTAGCCTTCCATATGCCTGAAGCCGTGAATGTTAATCCTCAGAATTATCTTGAG..............................................................................................GCTCTCTACTTAGCATGCAAAACTTTTGTGAAATCCAAGTGCAGTTTTGGCATTTCATGTAAAGAGTTAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E541084" ref_strand="+" ref_description="SGN-E541084 	[TUS-61-L2]">
      <seq>ttttatgaatacatcccacccatggcttagaggctttggtccagcagcattagtacaacaattgttgtgtaataggggtgcatgttgccagtttgaaatatcccttttgtttagggataagagtgcaacagttggtgagtacgatgcatgccacagatttgaattatgaagcttggtatctaagcagagaaagacagatggccggtgcaacatagagattcaaacaaaagtgaaatctctctactgttttttgctgataatgttcacaacttctatagccaagtgagaccatatgtaaagttggaaaaattggtataaaagtaacctatttggagttagagaaaagttgtttttgatataatttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="42457" stop="43423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42757" g_stop="43123" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E541084" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42757" e_stop="43123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATGAATACATCCCACCCATGGCTTAGAGGCTTTGGTCCAGCAGCATTAGTACAACAATTGTTGTGTAATAGGGGTGCATGTTGCCAGTTTGAAATATCCCTTTTGTTTAGGGATAAGAGTGCAACAGTTGGTGAGTACGATGCATGCCACAGATTTGAATTATGAAGCTTGGTATCTAAGCAGAGAAAGACAGATGGCCGGTGCAACATAGAGATTCAAACAAAAGTGAAATCTCTCTACTGTTTTTTGCTGATAATGTTCACAACTTCTATAGCCAAGTGAGACCATATGTAAAGTTGGAAAAATTGGTATAAAAGTAACCTATTTGGAGTTAGAGAAAAGTTGTTTTTGATATAATTTGCA</genome_strand>
        <mrna_strand>TTTTATGAATACATCCCACCCATGGCTTAGAGGCTTTGGTCCAGCAGCATTAGTACAACAATTGTTGTGTAATAGGGGTGCATGTTGCCAGTTTGAAATATCCCTTTTGTTTAGGGATAAGAGTGCAACAGTTGGTGAGTACGATGCATGCCACAGATTTGAATTATGAAGCTTGGTATCTAAGCAGAGAAAGACAGATGGCCGGTGCAACATAGAGATTCAAACAAAAGTGAAATCTCTCTACTGTTTTTTGCTGATAATGTTCACAACTTCTATAGCCAAGTGAGACCATATGTAAAGTTGGAAAAATTGGTATAAAAGTAACCTATTTGGAGTTAGAGAAAAGTTGTTTTTGATATAATTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E293341" ref_strand="+" ref_description="SGN-E293341 	[cLET-18-I13]">
      <seq>tttatgaatacatcccacccatggcttagaggctttggtccagcagcattagtacaacaattgttgtgtaataggggtgcatgttgccagtttgaaatatcccttttgtttagggataagagtgcaacagttggtgagtacgatgcatgccacagatttgaattatgaagcttggtatctaagcagagaaagacagatggccggtgcaacatagagattcaaacaaaagtgaaatctctctactgttttttgctgataatgttcacaacttctatagccaagtgagaccatatgtaaagttggaaaaattggtataaaagtaacctatttggagttagagaaaagttgtttttgatataatttgcaaaaagagaacaatgaaagtgaaggtaaaatgttgaagataatatgacaaactaaaaaaggaacaatcagtatcaaaattatacaatgaagtgcaagaaatattaaaagggatggaacaacaagaaacttcatggaaatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="42458" stop="43565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42758" g_stop="43265" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E293341" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42758" e_stop="43265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATGAATACATCCCACCCATGGCTTAGAGGCTTTGGTCCAGCAGCATTAGTACAACAATTGTTGTGTAATAGGGGTGCATGTTGCCAGTTTGAAATATCCCTTTTGTTTAGGGATAAGAGTGCAACAGTTGGTGAGTACGATGCATGCCACAGATTTGAATTATGAAGCTTGGTATCTAAGCAGAGAAAGACAGATGGCCGGTGCAACATAGAGATTCAAACAAAAGTGAAATCTCTCTACTGTTTTTTGCTGATAATGTTCACAACTTCTATAGCCAAGTGAGACCATATGTAAAGTTGGAAAAATTGGTATAAAAGTAACCTATTTGGAGTTAGAGAAAAGTTGTTTTTGATATAATTTGCAAAAAGAGAACAATGAAAGTGAAGGTAAAATGTTGAAGATAATATGACAAACTAAAAAAGGAACAATCAGTATCAAAATTATACAATGAAGTGCAAGAAATATTAAAAGGGATGGAACAAACAGAAACTTCATGGAAATTTGA</genome_strand>
        <mrna_strand>TTTATGAATACATCCCACCCATGGCTTAGAGGCTTTGGTCCAGCAGCATTAGTACAACAATTGTTGTGTAATAGGGGTGCATGTTGCCAGTTTGAAATATCCCTTTTGTTTAGGGATAAGAGTGCAACAGTTGGTGAGTACGATGCATGCCACAGATTTGAATTATGAAGCTTGGTATCTAAGCAGAGAAAGACAGATGGCCGGTGCAACATAGAGATTCAAACAAAAGTGAAATCTCTCTACTGTTTTTTGCTGATAATGTTCACAACTTCTATAGCCAAGTGAGACCATATGTAAAGTTGGAAAAATTGGTATAAAAGTAACCTATTTGGAGTTAGAGAAAAGTTGTTTTTGATATAATTTGCAAAAAGAGAACAATGAAAGTGAAGGTAAAATGTTGAAGATAATATGACAAACTAAAAAAGGAACAATCAGTATCAAAATTATACAATGAAGTGCAAGAAATATTAAAAGGGATGGAACAACAAGAAACTTCATGGAAATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E541081" ref_strand="-" ref_description="SGN-E541081 	[TUS-61-L2]">
      <seq>catatgtaaagttggaaaaattggtataaaagtaacctatttggagttagagaaaagttgtttttgatataatttgcaaaaagagaacaatgaaagtgaaggtaaaatgttgaagataatatgacaaactaaaaaaggaacaatcagtatcaaaattatacaatgaagtgcaagaaatattaaaagggatggaacaacaagaaacttcatggaaatttgattatccatcatcataccttcgcatcggaacacctgtacatctcattttcacatattcgaactatattcgaactatcttgactgagaaaattatattaaaaagaatctaaaaattgtaaatgcaaatctttgtgtcctaaagaaattgttattttatactttcaacaagattaaagttgatttttttaatgaagatactgttcctctggtaaagatgggagtattttagttcaagtgttgggtactatataagcaaaaccttagggcaatggacaaagcaaaaagctcaaaagggaaagaatgaggcttaaagagagtttaaggatttctcattgaaagggtggttgccactctttacatcagccgatgatttctccatttatctaagaattccaacaaccttttttttatcaattttgaacagaggaaatatacaattatcagctttgttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="42746" stop="64804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43046" g_stop="43719" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43720" i_stop="45901" i_length="2182">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.667" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45902" g_stop="45940" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="712" r_length="39" r_score="0.564"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E541081" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541081" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43046" e_stop="43719"/>
          <exon e_start="45902" e_stop="45940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATGTAAAGTTGGAAAAATTGGTATAAAAGTAACCTATTTGGAGTTAGAGAAAAGTTGTTTTTGATATAATTTGCAAAAAGAGAACAATGAAAGTGAAGGTAAAATGTTGAAGATAATATGACAAACTAAAAAAGGAACAATCAGTATCAAAATTATACAATGAAGTGCAAGAAATATTAAAAGGGATGGAACAAACAGAAACTTCATGGAAATTTGATTATCCATCATCATACCTTCGCATCGGAACACCTGTACATCTCATTTTCACATATTCGAACTATATTCGAACTATCTTGACTGAGAAAATTATATTAAAAAGAATCTAAAAATTGTAAATGCAAATCTCTGTGTCCTAAAGAAATTGTTATTTTATACTTTCAACAAGATTAAAGTTGATTTTTTTAATGAAGATACTGTTCCTCTGGTAAAGATGGGAGTATTTTAGTTCAAGTGTTGGGTACTATATAAGCAAAACCTTAGGGCAATGGACAAAGCAAAAAGCTCAAAAGGGAAAGAATGAGGCTTAAAGAGAGTTTAAGGATTTCTCATTGAAAGGGTGGTTGCCACTCTCTACATCAGCCGATGATTTCTCCATTTATCTAAGAATTCCAACAACCTTTTTCTTATCAATTTTGAACAGAGGAAATATACAATTATCAGCTTTGTTTGAAATGGGTTTCTATGGCCTTTCAACTCTTTTTCCCTTTTTATTTCTTTATACTTATGCTTATGCCTGAGCATTCAGTGTTGCCGGTGGGGGTGATTATAATTGGTGTCTTTATAGAGGCGATGATGATTTTTGTCCCTTTTTATTCCCTTTTGAGCTGATTAATTGAGCATTTGAGGTTATCTGATCCGTAACTTGGCGGGGCATACTTTTTTTTGCAGCCATGGCGTGGTTGGACTCTCTTTTTGCTCGAGCTTAACACAGATCTGAGCCTCAATTTGCTGGTCTCTTCATCAATTTCAATTGAGGGAGTATTATTAACAGCTTCAGGGTACTATAAGCTATTATTCATAAATTAAAAATGAGGCTAACATGGATTTTGAGGATTTTTATGTTGAAAGGGTGGTTGAGTCTCTCTGCATTCAGCCCATGTATTCACCATACTGTAAGAAACCTAGCAACTCTTTTATTAATTTATAATGAAGTATATTAGTTTGTTTTGGTCATGTTTCATTGCAAAATTTGTAAAAAAATGTAGTGTTTGATTGCAAAATGAAAAATTATATTTGAAAATTAAAGTTGCATTTTGCTATGAATACAAATTGGAGTCGTGTTTGACTTTTTGTGAGTAATTTGGAGTGAAAAAAAATAAAAAAATCTTCTTCTTTTTTTCAAATCCTATGGTTGAAGTCCAAATTTTATGGCCAAACTTGTTTTTCAGTGTTCAACTCCAGAAAAATTTTATAAAATATCTTGGACAAACCTAACATCTCGTTTGGATTGTGGTTACATATTGTCAAGGACATGGATCAGGGTAGGAGGTTCGTAGGTAGTAGACTAGTTGTGCATTGTCTTGCTATCTGCCCATACTAGTGGTCATAATATTACTCATACAGTTTCTTGTCTTTTCATTTTGTTACTATTGGAAGTTTCTTGTACTTCGACTATCATATATTTTTGTAGTTACTGCTCAATATGTTTTGTTGCTCTTTCTGGACTGCTTTGGATTGTTTTTCTTAAGCCGAGAGTCTATTGAAAATCACCTCTCTACCTCTAAAGTAGGGGTAAGATATCCATATATTCTACTCTCTCAAATCCACCATATGAGACTATACTGAGTATGTTGTTGGATATTTTGCAATATATAGAGGCCTTAAATTGAACAGACACATTTTTGTTCATGAAAGAACATGACTGTTATGAAAAGTCGATCTCTTAAGGTTTATAAATGTATGGACTCTCCAAAAGTAGCCCTAAAAGAAAAATATGCATGTATATATAAGGACTTTGTTGTATCTTGAAGGCAGTTGCTAGTATTTTTCCCAATATGTATACGTGCAATATCTCTTTAAGGAAAGTGATTCTTCACGCCTTAAATCCATCTTCTTCTTCAATTATATTTCCTATTATTTTTCTAACAGTTGATTTTATTGCTTCGGATGGCTAGGAAGAGGCGATGATGATTTTTGTAACTTTTATTCCCTTCTGAGCTGATTAATTGAGCATTGGAGGTTATCCGACCTGTATCTTGGCGGGGCATGCTGGTTTTTGCAGCCATGGCGTGGTTGGACTCTCTTTATACTCTTGTTTAACACAGATCTGAGCCTCAATGCACTGGTCTCTTTGTCAATTTAAACTGAGGGGTAGTATTACCAGCTTCAGGGTACTATAAGAATGAGGCTAACAGGGAGTTTGAGGATTTTCGTTGAAAGGGTGGTTGCCTCTCTCTGCATTCAGTCAATGATTTCTCCATTATTGTAAGAATCCCAACAACCCTCTCATAATTTTTAAACAGAGGAAGTATATGATTATCAACTTTTGTTTGAAATGGGTTTCTATATGCCCTTCCAACTCTTTTTTCCATCTTTTTTTTAATGCTTCCACTGGATCATTGATTGTTGCCACTGGAGCTGGTGGAAGCAATGGTGCTGAGAATAATTGGACAGCTTGAAAGAGGCAATGATGATTTTTGCCAATGTTTATTCCCTTCTGAGCTGATTAATCGGGCATTTGAGATTATCCAACCCATATCTTGGAGGGTCATGCTCCCAGATTTTCTGGTGGATTTTGCAGCCATGGCATGGTTGGAATCTCTTGTTGCCTGAGCTTAACACAAATCTGAGCCTCAATTTTTCTCTGTTCAGCTTGGCCTTTTTTATTATATTTAGGGTATGTTCGGTATGAAGGAAAATGTTATCGAGAGTTGAGATACAAAAAAACAAAAA</genome_strand>
        <mrna_strand>CATATGTAAAGTTGGAAAAATTGGTATAAAAGTAACCTATTTGGAGTTAGAGAAAAGTTGTTTTTGATATAATTTGCAAAAAGAGAACAATGAAAGTGAAGGTAAAATGTTGAAGATAATATGACAAACTAAAAAAGGAACAATCAGTATCAAAATTATACAATGAAGTGCAAGAAATATTAAAAGGGATGGAACAACAAGAAACTTCATGGAAATTTGATTATCCATCATCATACCTTCGCATCGGAACACCTGTACATCTCATTTTCACATATTCGAACTATATTCGAACTATCTTGACTGAGAAAATTATATTAAAAAGAATCTAAAAATTGTAAATGCAAATCTTTGTGTCCTAAAGAAATTGTTATTTTATACTTTCAACAAGATTAAAGTTGATTTTTTTAATGAAGATACTGTTCCTCTGGTAAAGATGGGAGTATTTTAGTTCAAGTGTTGGGTACTATATAAGCAAAACCTTAGGGCAATGGACAAAGCAAAAAGCTCAAAAGGGAAAGAATGAGGCTTAAAGAGAGTTTAAGGATTTCTCATTGAAAGGGTGGTTGCCACTCTTTACATCAGCCGATGATTTCTCCATTTATCTAAGAATTCCAACAACCTTTTTTTTATCAATTTTGAACAGAGGAAATATACAATTATCAGCTTTG-TTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E202701" ref_strand="+" ref_description="SGN-E202701 	[cLEC-19-L12]">
      <seq>tcaaccaccctttcaacataaaaatcctcaaaatccatgttagcctcatttttaatttatgagtaatagcttatagtaccctgaagctgttaataatactccctcaattgaaattgatgaagagaccagcaaattgaggctcagatctgtgttaagctcgagcaaaaagagagtccaaccacgccatggctgcaaaaaaaagtatgccccgccaagttacggatcagataacctcaaatgctcaattaatcagctcaaaagggaataaaaagggacaaaaatcatcatcgcctctataaagacaccaattataatcacccccaccggcaacactgaatgctcaggcataagcataagtataaagaaataaaaagggaaaaagagttgaaaggccatagaaacccatttcaaacaaagctgataattgtatatttcctctgttcaaaattgataagaaaaaggttgttggaattcttagataaatggagaaatcatcggctgatgtagagagtggcaaccaccctttcaatgagaaatccttaaactctctttaagcctcattctttcccttttgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="44425" stop="43249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44125" g_stop="43549" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E202701" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44125" e_stop="43549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCACCCTTTCAACATAAAAATCCTCAAAATCCATGTTAGCCTCATTTTTAATTTATGAATAATAGCTTATAGTACCCTGAAGCTGTTAATAATACTCCCTCAATTGAAATTGATGAAGAGACCAGCAAATTGAGGCTCAGATCTGTGTTAAGCTCGAGCAAAAAGAGAGTCCAACCACGCCATGGCTGCAAAAAAAAGTATGCCCCGCCAAGTTACGGATCAGATAACCTCAAATGCTCAATTAATCAGCTCAAAAGGGAATAAAAAGGGACAAAAATCATCATCGCCTCTATAAAGACACCAATTATAATCACCCCCACCGGCAACACTGAATGCTCAGGCATAAGCATAAGTATAAAGAAATAAAAAGGGAAAAAGAGTTGAAAGGCCATAGAAACCCATTTCAAACAAAGCTGATAATTGTATATTTCCTCTGTTCAAAATTGATAAGAAAAAGGTTGTTGGAATTCTTAGATAAATGGAGAAATCATCGGCTGATGTAGAGAGTGGCAACCACCCTTTCAATGAGAAATCCTTAAACTCTCTTTAAGCCTCATTCTTTCCCTTTTGAGC</genome_strand>
        <mrna_strand>TCAACCACCCTTTCAACATAAAAATCCTCAAAATCCATGTTAGCCTCATTTTTAATTTATGAGTAATAGCTTATAGTACCCTGAAGCTGTTAATAATACTCCCTCAATTGAAATTGATGAAGAGACCAGCAAATTGAGGCTCAGATCTGTGTTAAGCTCGAGCAAAAAGAGAGTCCAACCACGCCATGGCTGCAAAAAAAAGTATGCCCCGCCAAGTTACGGATCAGATAACCTCAAATGCTCAATTAATCAGCTCAAAAGGGAATAAAAAGGGACAAAAATCATCATCGCCTCTATAAAGACACCAATTATAATCACCCCCACCGGCAACACTGAATGCTCAGGCATAAGCATAAGTATAAAGAAATAAAAAGGGAAAAAGAGTTGAAAGGCCATAGAAACCCATTTCAAACAAAGCTGATAATTGTATATTTCCTCTGTTCAAAATTGATAAGAAAAAGGTTGTTGGAATTCTTAGATAAATGGAGAAATCATCGGCTGATGTAGAGAGTGGCAACCACCCTTTCAATGAGAAATCCTTAAACTCTCTTTAAGCCTCATTCTTTCCCTTTTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E209349" ref_strand="+" ref_description="SGN-E209349 	[cLEC-53-P8]">
      <seq>aagaatgaggcttaaagagagtttaaggatttctcattgaaagggtggttgccactctctacatcagccgatgatttctccatttatctaagaattccaacaacctttttcttatcaattttgaacagaggaaatatacaattatcagctttgtttgaaatgggtttctatggcctttcaactctttttccctttttatttctttatacttatgcttatgcctgagcattcagtgttgccggtgggggtgattataattggtgtctttatagaggcgatgatgattttttgccctttttattcccttttgagctgattaatcgggcatttgagattatccaacccatatcttggagggtcatgctcccagattttctggtggattttgcagccatggcatggttggaatctcttgttgcctgagcttaacacaaatctgagcctcaatttttctctgttcattaatagtattaaaaaatacaaatatatataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="43261" stop="46158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43561" g_stop="43872" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43873" i_stop="45709" i_length="1837">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45710" g_stop="45858" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="461" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E209349" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43561" e_stop="43872"/>
          <exon e_start="45710" e_stop="45858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGAGGCTTAAAGAGAGTTTAAGGATTTCTCATTGAAAGGGTGGTTGCCACTCTCTACATCAGCCGATGATTTCTCCATTTATCTAAGAATTCCAACAACCTTTTTCTTATCAATTTTGAACAGAGGAAATATACAATTATCAGCTTTGTTTGAAATGGGTTTCTATGGCCTTTCAACTCTTTTTCCCTTTTTATTTCTTTATACTTATGCTTATGCCTGAGCATTCAGTGTTGCCGGTGGGGGTGATTATAATTGGTGTCTTTATAGAGGCGATGATGATTTTTGTCCCTTTTTATTCCCTTTTGAGCTGATTAATTGAGCATTTGAGGTTATCTGATCCGTAACTTGGCGGGGCATACTTTTTTTTGCAGCCATGGCGTGGTTGGACTCTCTTTTTGCTCGAGCTTAACACAGATCTGAGCCTCAATTTGCTGGTCTCTTCATCAATTTCAATTGAGGGAGTATTATTAACAGCTTCAGGGTACTATAAGCTATTATTCATAAATTAAAAATGAGGCTAACATGGATTTTGAGGATTTTTATGTTGAAAGGGTGGTTGAGTCTCTCTGCATTCAGCCCATGTATTCACCATACTGTAAGAAACCTAGCAACTCTTTTATTAATTTATAATGAAGTATATTAGTTTGTTTTGGTCATGTTTCATTGCAAAATTTGTAAAAAAATGTAGTGTTTGATTGCAAAATGAAAAATTATATTTGAAAATTAAAGTTGCATTTTGCTATGAATACAAATTGGAGTCGTGTTTGACTTTTTGTGAGTAATTTGGAGTGAAAAAAAATAAAAAAATCTTCTTCTTTTTTTCAAATCCTATGGTTGAAGTCCAAATTTTATGGCCAAACTTGTTTTTCAGTGTTCAACTCCAGAAAAATTTTATAAAATATCTTGGACAAACCTAACATCTCGTTTGGATTGTGGTTACATATTGTCAAGGACATGGATCAGGGTAGGAGGTTCGTAGGTAGTAGACTAGTTGTGCATTGTCTTGCTATCTGCCCATACTAGTGGTCATAATATTACTCATACAGTTTCTTGTCTTTTCATTTTGTTACTATTGGAAGTTTCTTGTACTTCGACTATCATATATTTTTGTAGTTACTGCTCAATATGTTTTGTTGCTCTTTCTGGACTGCTTTGGATTGTTTTTCTTAAGCCGAGAGTCTATTGAAAATCACCTCTCTACCTCTAAAGTAGGGGTAAGATATCCATATATTCTACTCTCTCAAATCCACCATATGAGACTATACTGAGTATGTTGTTGGATATTTTGCAATATATAGAGGCCTTAAATTGAACAGACACATTTTTGTTCATGAAAGAACATGACTGTTATGAAAAGTCGATCTCTTAAGGTTTATAAATGTATGGACTCTCCAAAAGTAGCCCTAAAAGAAAAATATGCATGTATATATAAGGACTTTGTTGTATCTTGAAGGCAGTTGCTAGTATTTTTCCCAATATGTATACGTGCAATATCTCTTTAAGGAAAGTGATTCTTCACGCCTTAAATCCATCTTCTTCTTCAATTATATTTCCTATTATTTTTCTAACAGTTGATTTTATTGCTTCGGATGGCTAGGAAGAGGCGATGATGATTTTTGTAACTTTTATTCCCTTCTGAGCTGATTAATTGAGCATTGGAGGTTATCCGACCTGTATCTTGGCGGGGCATGCTGGTTTTTGCAGCCATGGCGTGGTTGGACTCTCTTTATACTCTTGTTTAACACAGATCTGAGCCTCAATGCACTGGTCTCTTTGTCAATTTAAACTGAGGGGTAGTATTACCAGCTTCAGGGTACTATAAGAATGAGGCTAACAGGGAGTTTGAGGATTTTCGTTGAAAGGGTGGTTGCCTCTCTCTGCATTCAGTCAATGATTTCTCCATTATTGTAAGAATCCCAACAACCCTCTCATAATTTTTAAACAGAGGAAGTATATGATTATCAACTTTTGTTTGAAATGGGTTTCTATATGCCCTTCCAACTCTTTTTTCCATCTTTTTTTTAATGCTTCCACTGGATCATTGATTGTTGCCACTGGAGCTGGTGGAAGCAATGGTGCTGAGAATAATTGGACAGCTTGAAAGAGGCAATGATGATTTTTGCCAATGTTTATTCCCTTCTGAGCTGATTAATCGGGCATTTGAGATTATCCAACCCATATCTTGGAGGGTCATGCTCCCAGATTTTCTGGTGGATTTTGCAGCCATGGCATGGTTGGAATCTCTTGTTGCCTGAGCTTAACACAAATCTGAGCCTCAATTTTTCTCTGTTCA</genome_strand>
        <mrna_strand>AAGAATGAGGCTTAAAGAGAGTTTAAGGATTTCTCATTGAAAGGGTGGTTGCCACTCTCTACATCAGCCGATGATTTCTCCATTTATCTAAGAATTCCAACAACCTTTTTCTTATCAATTTTGAACAGAGGAAATATACAATTATCAGCTTTGTTTGAAATGGGTTTCTATGGCCTTTCAACTCTTTTTCCCTTTTTATTTCTTTATACTTATGCTTATGCCTGAGCATTCAGTGTTGCCGGTGGGGGTGATTATAATTGGTGTCTTTATAGAGGCGATGATGATTTTTTGCCCTTTTTATTCCCTTTTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTAATCGGGCATTTGAGATTATCCAACCCATATCTTGGAGGGTCATGCTCCCAGATTTTCTGGTGGATTTTGCAGCCATGGCATGGTTGGAATCTCTTGTTGCCTGAGCTTAACACAAATCTGAGCCTCAATTTTTCTCTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E276356" ref_strand="+" ref_description="SGN-E276356 	[cLEN-17-C17]">
      <seq>aagaatgaggcttaaagagagtttaaggatttctcattgaaagggtggttgccactctctacatcagccgatgatttctccatttatctaagaattccaacaacctttttcttatcaattttgaacagaggaaatatacaattatcagctttgtttgaaatgggtttctatggcctttcaactctttttccctttttatttctttatacttatgcttatgcctgagcattcagtgttgccggtgggggtgattataattggtgtctttatagaggcgatgatgatttttgtccctttttattcccttttgagctgattaattgagcatttgaggttatctgatccgtaacttggcggggcatacttttttttgcagccatggcgtggttggactctctttttgctcgagcttaacacagatctgagcctcaatttgctggtctcttcatcaatttcaattgagggagtattattaacagcttcagggtactataagctattattcataaattaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="43261" stop="44378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43561" g_stop="44078" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E276356" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43561" e_stop="44078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGAGGCTTAAAGAGAGTTTAAGGATTTCTCATTGAAAGGGTGGTTGCCACTCTCTACATCAGCCGATGATTTCTCCATTTATCTAAGAATTCCAACAACCTTTTTCTTATCAATTTTGAACAGAGGAAATATACAATTATCAGCTTTGTTTGAAATGGGTTTCTATGGCCTTTCAACTCTTTTTCCCTTTTTATTTCTTTATACTTATGCTTATGCCTGAGCATTCAGTGTTGCCGGTGGGGGTGATTATAATTGGTGTCTTTATAGAGGCGATGATGATTTTTGTCCCTTTTTATTCCCTTTTGAGCTGATTAATTGAGCATTTGAGGTTATCTGATCCGTAACTTGGCGGGGCATACTTTTTTTTGCAGCCATGGCGTGGTTGGACTCTCTTTTTGCTCGAGCTTAACACAGATCTGAGCCTCAATTTGCTGGTCTCTTCATCAATTTCAATTGAGGGAGTATTATTAACAGCTTCAGGGTACTATAAGCTATTATTCATAAATTAAAAAT</genome_strand>
        <mrna_strand>AAGAATGAGGCTTAAAGAGAGTTTAAGGATTTCTCATTGAAAGGGTGGTTGCCACTCTCTACATCAGCCGATGATTTCTCCATTTATCTAAGAATTCCAACAACCTTTTTCTTATCAATTTTGAACAGAGGAAATATACAATTATCAGCTTTGTTTGAAATGGGTTTCTATGGCCTTTCAACTCTTTTTCCCTTTTTATTTCTTTATACTTATGCTTATGCCTGAGCATTCAGTGTTGCCGGTGGGGGTGATTATAATTGGTGTCTTTATAGAGGCGATGATGATTTTTGTCCCTTTTTATTCCCTTTTGAGCTGATTAATTGAGCATTTGAGGTTATCTGATCCGTAACTTGGCGGGGCATACTTTTTTTTGCAGCCATGGCGTGGTTGGACTCTCTTTTTGCTCGAGCTTAACACAGATCTGAGCCTCAATTTGCTGGTCTCTTCATCAATTTCAATTGAGGGAGTATTATTAACAGCTTCAGGGTACTATAAGCTATTATTCATAAATTAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E273325" ref_strand="+" ref_description="SGN-E273325 	[cLEN-3-G18]">
      <seq>atgaggcttaaagagagtttaaggatttctcattgaaagggtggttgccactctctacatcagccgatgatttctccatttatctaagaattccaacaacctttttcttatcaattttgaacagaggaaatatacaattatcagctttgtttgaaatgggtttctatggcctttcaactctttttccctttttatttctttatacttatgcttatgcctgagcattcagtgttgccggtgggggtgattataattggtgtctttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="43265" stop="44130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43565" g_stop="43830" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E273325" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43565" e_stop="43830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGGCTTAAAGAGAGTTTAAGGATTTCTCATTGAAAGGGTGGTTGCCACTCTCTACATCAGCCGATGATTTCTCCATTTATCTAAGAATTCCAACAACCTTTTTCTTATCAATTTTGAACAGAGGAAATATACAATTATCAGCTTTGTTTGAAATGGGTTTCTATGGCCTTTCAACTCTTTTTCCCTTTTTATTTCTTTATACTTATGCTTATGCCTGAGCATTCAGTGTTGCCGGTGGGGGTGATTATAATTGGTGTCTTTAT</genome_strand>
        <mrna_strand>ATGAGGCTTAAAGAGAGTTTAAGGATTTCTCATTGAAAGGGTGGTTGCCACTCTCTACATCAGCCGATGATTTCTCCATTTATCTAAGAATTCCAACAACCTTTTTCTTATCAATTTTGAACAGAGGAAATATACAATTATCAGCTTTGTTTGAAATGGGTTTCTATGGCCTTTCAACTCTTTTTCCCTTTTTATTTCTTTATACTTATGCTTATGCCTGAGCATTCAGTGTTGCCGGTGGGGGTGATTATAATTGGTGTCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E378714" ref_strand="+" ref_description="SGN-E378714 	[TUS-36-G19]">
      <seq>caggttgggacttgagatcagctatttttcaatattctatattttgagttctctaatgctaggtgaaatgcgtgtagttccagtttaataaagaaagagctgtattctaaaaatgaaatatatcaagtgtaccatttaagttgatttaccagtatttactaaaaataataatctcagaatgtcttaagttaacaatcaccttctagaataattttgtattctaggatgtgtattattaaaagaaagaaattaccattaaaatgaaaaaataatttaaacagcccactgtattatattgaacagaattctagaacctgccattgaacaatctgccaaaaaaggtcaatcattacacttgtaaggtgcttgaatgtccacgtctatatccacaaatatttcacagcacacaatatctcctcatcccaataaaccttatcaagaattcaatctctgaaagaacaaaaaaacttaaaatcctgtattgtttgtttgtttgattttagtttgaaataaaatctaaaaaagcaaaaaaagttgtcaattttgtgaatttaaaatatgtaaaatattattatctactctcataattttaaaaatattacatggaaagtattatcttttaagtaaattatttttgttaggagtaagataagggaaaaatggggaattaaattttaacgaataagataaaagctcaaataatcaatcaactgacaccaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="51279" stop="52600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51576" g_stop="52300" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E378714" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51576" e_stop="52300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTTGGGACTTGAGATCAGCTATATTTCAATATTCTATATTTTGAGTTCTCTAATGCTAGGTGAAATGCGTGTAGTTCCAGTTTAATAAAGAAAGAGCTGTATTCTAAAAATGAAATATATCAAGTGTACCATTTAAGTTGATTTACCAGTATTTACTAAAAATAATAATCTCAGAATGTCTTAAGTTAACAATCACCTTCTAGAATAATTTTGTATTCTAGGATGTGTATTATTAAAAGAAAGAAATTACCATTAAAATGAAAAAATAATTTAAACAGCCCACTGTATTATATTGAACAGAATTCTAGAACCTGCCATTGAACAATCTGCCAAAAAAGGTCAATCATTACACTTGTAAGGTGCTTGAATGTCCACGTCTATATCCACAAATATTTCACAGCACACAATATCTCCTCATCCCAATAAACCTTATCAAGAATTCAATCTCTGAAAGAACAAAAAAACTTAAAATCCTGTATTGTTTGTTTGTTTGATTTTAGTTTGAAATAAAATCTAAAAAAGCAAAAAAAGTTGTCAATTTTGTGAATTTAAAATATGTAAAATATTATTATCTACTCTCATAATTTTAAAAATATTACATGGAAAGTATTATCTTTTAAGTAAATTATTTTTGTTAGGAGTAAGATAAGGAAAAAATGGGGAATTAAATTTTAACGAATAAGATAAAAGCTCAAATAATCAATCAACTGACACCAAAAAAA</genome_strand>
        <mrna_strand>CAGGTTGGGACTTGAGATCAGCTATTTTTCAATATTCTATATTTTGAGTTCTCTAATGCTAGGTGAAATGCGTGTAGTTCCAGTTTAATAAAGAAAGAGCTGTATTCTAAAAATGAAATATATCAAGTGTACCATTTAAGTTGATTTACCAGTATTTACTAAAAATAATAATCTCAGAATGTCTTAAGTTAACAATCACCTTCTAGAATAATTTTGTATTCTAGGATGTGTATTATTAAAAGAAAGAAATTACCATTAAAATGAAAAAATAATTTAAACAGCCCACTGTATTATATTGAACAGAATTCTAGAACCTGCCATTGAACAATCTGCCAAAAAAGGTCAATCATTACACTTGTAAGGTGCTTGAATGTCCACGTCTATATCCACAAATATTTCACAGCACACAATATCTCCTCATCCCAATAAACCTTATCAAGAATTCAATCTCTGAAAGAACAAAAAAACTTAAAATCCTGTATTGTTTGTTTGTTTGATTTTAGTTTGAAATAAAATCTAAAAAAGCAAAAAAAGTTGTCAATTTTGTGAATTTAAAATATGTAAAATATTATTATCTACTCTCATAATTTTAAAAATATTACATGGAAAGTATTATCTTTTAAGTAAATTATTTTTGTTAGGAGTAAGATAAGGGAAAAATGGGGAATTAAATTTTAACGAATAAGATAAAAGCTCAAATAATCAATCAACTGACACCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E236298" ref_strand="+" ref_description="SGN-E236298 	[cLED-20-D13]">
      <seq>caggttgggacttgagatcagctatatttcaatattctatattttgagttctctaatgctaggtgaaatgcgtgtagttccagtttaataaagaaagagctgtattctaaaaatgaaatatatcaagtgtaccatttaagttgatttaccagtatttactaaaaataataatctcagaatgtcttaagttaacaatcaccttctagaataattttgtattctaggatgtgtattattaaaagaaagaaattaccattaaaatgaaaaaattattttaacagcccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="51279" stop="52162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51576" g_stop="51862" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E236298" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51576" e_stop="51862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTTGGGACTTGAGATCAGCTATATTTCAATATTCTATATTTTGAGTTCTCTAATGCTAGGTGAAATGCGTGTAGTTCCAGTTTAATAAAGAAAGAGCTGTATTCTAAAAATGAAATATATCAAGTGTACCATTTAAGTTGATTTACCAGTATTTACTAAAAATAATAATCTCAGAATGTCTTAAGTTAACAATCACCTTCTAGAATAATTTTGTATTCTAGGATGTGTATTATTAAAAGAAAGAAATTACCATTAAAATGAAAAAATAATTTAAACAGCCCACT</genome_strand>
        <mrna_strand>CAGGTTGGGACTTGAGATCAGCTATATTTCAATATTCTATATTTTGAGTTCTCTAATGCTAGGTGAAATGCGTGTAGTTCCAGTTTAATAAAGAAAGAGCTGTATTCTAAAAATGAAATATATCAAGTGTACCATTTAAGTTGATTTACCAGTATTTACTAAAAATAATAATCTCAGAATGTCTTAAGTTAACAATCACCTTCTAGAATAATTTTGTATTCTAGGATGTGTATTATTAAAAGAAAGAAATTACCATTAAAATGAAAAAATTATTTTAACAGCCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E375089" ref_strand="+" ref_description="SGN-E375089 	[TUS-36-G19]">
      <seq>tgggacttgagatcagctatatttcaatattctatattttgagttctctaatgctaggtgaaatgcgtgtagttccagtttaataaagaaagagctgtattctaaaaatgaaatatatcaagtgtaccatttaagttgatttaccagtatttactaaaaataataatctcagaatgtcttaagttaacaatcaccttctagaataattttgtattctaggatgtgtattattaaaagaaagaaattaccattaaaatgaaaaaataatttaaacagcccactgtattatattgaacagaattctagaacctgccattgaacaatctgccaaaaaaggtcaatcattacacttgtaaggtgcttgaatgtccacgtctatatccacaaatatttcacagcacacaatatctcctcatcccaataaaccttatcaagaattcaatctctgaaagaacaaaaaaacttaaaatcctgtattgtttgtttgtttgattttagtttgaaataaaatctaaaaaagcaaaaaaagttgtcaattttgtgaatttaaaatatgtaaaatattattatctactctcataattttaaaaatattacatggaaagtattatcttttaagtaaattatttttgttaggagtaagataaggaaaaaatggggaattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="51281" stop="52547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51581" g_stop="52247" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E375089" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51581" e_stop="52247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGACTTGAGATCAGCTATATTTCAATATTCTATATTTTGAGTTCTCTAATGCTAGGTGAAATGCGTGTAGTTCCAGTTTAATAAAGAAAGAGCTGTATTCTAAAAATGAAATATATCAAGTGTACCATTTAAGTTGATTTACCAGTATTTACTAAAAATAATAATCTCAGAATGTCTTAAGTTAACAATCACCTTCTAGAATAATTTTGTATTCTAGGATGTGTATTATTAAAAGAAAGAAATTACCATTAAAATGAAAAAATAATTTAAACAGCCCACTGTATTATATTGAACAGAATTCTAGAACCTGCCATTGAACAATCTGCCAAAAAAGGTCAATCATTACACTTGTAAGGTGCTTGAATGTCCACGTCTATATCCACAAATATTTCACAGCACACAATATCTCCTCATCCCAATAAACCTTATCAAGAATTCAATCTCTGAAAGAACAAAAAAACTTAAAATCCTGTATTGTTTGTTTGTTTGATTTTAGTTTGAAATAAAATCTAAAAAAGCAAAAAAAGTTGTCAATTTTGTGAATTTAAAATATGTAAAATATTATTATCTACTCTCATAATTTTAAAAATATTACATGGAAAGTATTATCTTTTAAGTAAATTATTTTTGTTAGGAGTAAGATAAGGAAAAAATGGGGAATTAAA</genome_strand>
        <mrna_strand>TGGGACTTGAGATCAGCTATATTTCAATATTCTATATTTTGAGTTCTCTAATGCTAGGTGAAATGCGTGTAGTTCCAGTTTAATAAAGAAAGAGCTGTATTCTAAAAATGAAATATATCAAGTGTACCATTTAAGTTGATTTACCAGTATTTACTAAAAATAATAATCTCAGAATGTCTTAAGTTAACAATCACCTTCTAGAATAATTTTGTATTCTAGGATGTGTATTATTAAAAGAAAGAAATTACCATTAAAATGAAAAAATAATTTAAACAGCCCACTGTATTATATTGAACAGAATTCTAGAACCTGCCATTGAACAATCTGCCAAAAAAGGTCAATCATTACACTTGTAAGGTGCTTGAATGTCCACGTCTATATCCACAAATATTTCACAGCACACAATATCTCCTCATCCCAATAAACCTTATCAAGAATTCAATCTCTGAAAGAACAAAAAAACTTAAAATCCTGTATTGTTTGTTTGTTTGATTTTAGTTTGAAATAAAATCTAAAAAAGCAAAAAAAGTTGTCAATTTTGTGAATTTAAAATATGTAAAATATTATTATCTACTCTCATAATTTTAAAAATATTACATGGAAAGTATTATCTTTTAAGTAAATTATTTTTGTTAGGAGTAAGATAAGGAAAAAATGGGGAATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E231094" ref_strand="+" ref_description="SGN-E231094 	[cLED-5-H24]">
      <seq>tgggacttgagatcagctatatttcaatattctatattttgagttctctaatgctaggtgaaatgcgtgtagttccagtttaataaagaaagagctgtattctaaaaatgaaatatatcaagtgtaccatttaagttgatttaccagtatttactaaaaataataatctcagaatgtcttaagttaacaatcaccttctagaataattttgtattctaggatgtgtattattaaaagaaagaaattaccattaaaatgaaaaaatcatttaaacagcccactgtattatattgaacagaattctagaacctgccattgaacaatctgccaaaaaaggtcaatcattacacttgtaaggtgcttgaatgtccacgtgtatatccacaaatatttcacagcacacaatatctcctcatcccaataaaccttatcaagaattcaatctctgaaagaacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="51281" stop="52340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51581" g_stop="52040" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E231094" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51581" e_stop="52040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGACTTGAGATCAGCTATATTTCAATATTCTATATTTTGAGTTCTCTAATGCTAGGTGAAATGCGTGTAGTTCCAGTTTAATAAAGAAAGAGCTGTATTCTAAAAATGAAATATATCAAGTGTACCATTTAAGTTGATTTACCAGTATTTACTAAAAATAATAATCTCAGAATGTCTTAAGTTAACAATCACCTTCTAGAATAATTTTGTATTCTAGGATGTGTATTATTAAAAGAAAGAAATTACCATTAAAATGAAAAAATAATTTAAACAGCCCACTGTATTATATTGAACAGAATTCTAGAACCTGCCATTGAACAATCTGCCAAAAAAGGTCAATCATTACACTTGTAAGGTGCTTGAATGTCCACGTCTATATCCACAAATATTTCACAGCACACAATATCTCCTCATCCCAATAAACCTTATCAAGAATTCAATCTCTGAAAGAACAAAAA</genome_strand>
        <mrna_strand>TGGGACTTGAGATCAGCTATATTTCAATATTCTATATTTTGAGTTCTCTAATGCTAGGTGAAATGCGTGTAGTTCCAGTTTAATAAAGAAAGAGCTGTATTCTAAAAATGAAATATATCAAGTGTACCATTTAAGTTGATTTACCAGTATTTACTAAAAATAATAATCTCAGAATGTCTTAAGTTAACAATCACCTTCTAGAATAATTTTGTATTCTAGGATGTGTATTATTAAAAGAAAGAAATTACCATTAAAATGAAAAAATCATTTAAACAGCCCACTGTATTATATTGAACAGAATTCTAGAACCTGCCATTGAACAATCTGCCAAAAAAGGTCAATCATTACACTTGTAAGGTGCTTGAATGTCCACGTGTATATCCACAAATATTTCACAGCACACAATATCTCCTCATCCCAATAAACCTTATCAAGAATTCAATCTCTGAAAGAACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E238229" ref_strand="+" ref_description="SGN-E238229 	[cLED-22-I18]">
      <seq>tgggacttgagatcagctatatttcaatattctatattttgagttctctaatgctaggtgaaatgcgtgtagttccagtttaataaagaaagagctgtattctaaaaatgaaatatatcaagtgtaccatttaagttgatttaccagtatttactaaaaataataatctcagaatgtcttaagttaacaatcaccttctagaataattttgtattctaggatgtgtattattaaaagaaagaaattaccattaaaatgaaaaaataatttaaacagcccactgtattatattgaacagaattctagaacctgccattgaacaatctgccaaaaaaggtcaatcattacacttgtaaggtgcttgaatgtccacgtctatatccacaaatatttcacagcacacaatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="51281" stop="52289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51581" g_stop="51989" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E238229" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51581" e_stop="51989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGACTTGAGATCAGCTATATTTCAATATTCTATATTTTGAGTTCTCTAATGCTAGGTGAAATGCGTGTAGTTCCAGTTTAATAAAGAAAGAGCTGTATTCTAAAAATGAAATATATCAAGTGTACCATTTAAGTTGATTTACCAGTATTTACTAAAAATAATAATCTCAGAATGTCTTAAGTTAACAATCACCTTCTAGAATAATTTTGTATTCTAGGATGTGTATTATTAAAAGAAAGAAATTACCATTAAAATGAAAAAATAATTTAAACAGCCCACTGTATTATATTGAACAGAATTCTAGAACCTGCCATTGAACAATCTGCCAAAAAAGGTCAATCATTACACTTGTAAGGTGCTTGAATGTCCACGTCTATATCCACAAATATTTCACAGCACACAATATC</genome_strand>
        <mrna_strand>TGGGACTTGAGATCAGCTATATTTCAATATTCTATATTTTGAGTTCTCTAATGCTAGGTGAAATGCGTGTAGTTCCAGTTTAATAAAGAAAGAGCTGTATTCTAAAAATGAAATATATCAAGTGTACCATTTAAGTTGATTTACCAGTATTTACTAAAAATAATAATCTCAGAATGTCTTAAGTTAACAATCACCTTCTAGAATAATTTTGTATTCTAGGATGTGTATTATTAAAAGAAAGAAATTACCATTAAAATGAAAAAATAATTTAAACAGCCCACTGTATTATATTGAACAGAATTCTAGAACCTGCCATTGAACAATCTGCCAAAAAAGGTCAATCATTACACTTGTAAGGTGCTTGAATGTCCACGTCTATATCCACAAATATTTCACAGCACACAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E343112" ref_strand="+" ref_description="SGN-E343112 	[cTOF-17-A6]">
      <seq>aaagagaccaaaacccttatactacactttgaaattttgcaaaaaaatatgaccacaaaagagatggaagtagtgaagaatttggatgttgaaaaatacatgggaagatggtatgaaattgcctcatttccatcaagaaatcaaccaaaagatggtgtaaacacaagagccacttacactttaaaccaagatggaacagtacatgtgttaaatgaaacatggagtggtggtaaaagaggttcaattgaagggactgcctataaagctgatccaaaaagtgatgaagcaaaacttaaagtgaaattttatatcccacctttcttgccaattattcctattgttggtgattattgggttttatatattgatgatgattatcaatatgctttgattggtcagcctagtaagaaatatctttggatattatgtaggcaaccacatcttgatgaagaaatatacaaccaacttgttgagaaggcaaaagaagtaggatatgatgtgagcaaacttcacaagacacctcaagctgatcctccaccagatggtgaagatgccccaaaggacactaaaggattnntggtggatcaaatcaatattgggaaaatagtcaatcttgaatatggtttttttaaaccaatagctaaataaattttacaatataaattatgaaaagttgtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="52195" stop="53733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52495" g_stop="52914" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52915" i_stop="53173" i_length="259">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53174" g_stop="53433" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="681" r_length="261" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E343112" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52495" e_stop="52914"/>
          <exon e_start="53174" e_stop="53433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGACCAAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGGGTAAGTTCACTAAACCTTAGTTGTTGATATTTTGAAAAACAACATATGGTTGGATATGAATATTTGGGAGGAAGCTAGTTACATAATGCTTATCATAAACTTAAGTGGAGTTAAGATACAATAACAACTTATTCAATAGTCTTATAAGTAAGTTATTCAGTATAGTTTTATAACATGTTTTCCGAGGAGATTTATCTATAGATATCTTCTGCTTGATCATATTATATGTTTTTAACAAAATGTTTATTCTGGTTTATAGATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATT-TTGGTGGATCAAATCAATATTGGGAAAATAGTCAATCTTGAATATGGTTTTTTTAAACCAATAGCTAAATAAATTTTACAATATAAATTATGAAAAGTTGTCTTG</genome_strand>
        <mrna_strand>AAAGAGACCAAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGG...................................................................................................................................................................................................................................................................ATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTNNTGGTGGATCAAATCAATATTGGGAAAATAGTCAATCTTGAATATGGTTTTTTTAAACCAATAGCTAAATAAATTTTACAATATAAATTATGAAAAGTTGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E578195" ref_strand="+" ref_description="SGN-E578195 	[LE12AD09]">
      <seq>gagaccaaaacccttactacactttgaaattttgcaaaaaaatatgaccacaaaagagatggaagtagtaaagaatttggatgttgaaaaatacatgggaagatggtatgaaattgcctcatttccatcaagaaatcaaccaaaagatggtgtaaacacaagagccacttacactttaaaccaagatggaacagtacatgtgttaaatgaaacatggagtggtggtaaaagaggttcaattgaagggactgcctataaagctgatccaaaaagtgatgaagcaaaacttaaagtgaaattttatatcccacctttcttgccaattattcctattgttggtgattattgggttttatatattgatgatgattatcaatatgctttgattggtcagcctagtaagaaatatctttggatattatgtaggcaaccacatcttgatgaagaaatatacaaccaacttgttgagaaggcaaaagaagtaggatatgatgtgagcaaacttcacaagacacctcaagctgatcctccaccagatggtgaagatgccccaaaggacactaaaggattttggtggatcaaatcaatattgggaaaatagtcaatcttgaatatggtttttttaaaaccaatagctaaataaattttacaatataaattatgaaaagttgtcttgtaaagaagagtttaatattgtttatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="52198" stop="53761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52498" g_stop="52914" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52915" i_stop="53173" i_length="259">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53174" g_stop="53461" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="704" r_length="289" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E578195" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52498" e_stop="52914"/>
          <exon e_start="53174" e_stop="53461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACCAAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGGGTAAGTTCACTAAACCTTAGTTGTTGATATTTTGAAAAACAACATATGGTTGGATATGAATATTTGGGAGGAAGCTAGTTACATAATGCTTATCATAAACTTAAGTGGAGTTAAGATACAATAACAACTTATTCAATAGTCTTATAAGTAAGTTATTCAGTATAGTTTTATAACATGTTTTCCGAGGAGATTTATCTATAGATATCTTCTGCTTGATCATATTATATGTTTTTAACAAAATGTTTATTCTGGTTTATAGATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTGGTGGATCAAATCAATATTGGGAAAATAGTCAATCTTGAATATGGTTTTTTT-AAACCAATAGCTAAATAAATTTTACAATATAAATTATGAAAAGTTGTCTTGTAAAGAAGAGTTTATTATTGTTTATATT</genome_strand>
        <mrna_strand>GAGACCAAAACCC-T-TACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTAAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGG...................................................................................................................................................................................................................................................................ATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTGGTGGATCAAATCAATATTGGGAAAATAGTCAATCTTGAATATGGTTTTTTTAAAACCAATAGCTAAATAAATTTTACAATATAAATTATGAAAAGTTGTCTTGTAAAGAAGAGTTTAATATTGTTTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E350084" ref_strand="+" ref_description="SGN-E350084 	[cTOS-4-B22]">
      <seq>agaccaaaacccttatactacactttgaaattttgcaaaaaaatatgaccacaaaagagatggaagtagtgaagaatttggatgttgaaaaatacatgggaagatggtatgaaattgcctcatttccatcaagaaatcaaccaaaagatggtgtaaacacaagagccacttacactttaaaccaagatggaacagtacatgtgttaaatgaaacatggagtggtggtaaaagaggttcaattgaagggactgcctataaagctgatccaaaaagtgatgaagcaaaacttaaagtgaaattttatatcccacctttcttgccaattattcctattgttggtgattattgggttttatatattgatgatgattatcaatatgctttgattggtcagcctagtaagaaatatctttggatattatgtaggcaaccacatcttgatgaagaaatatacaaccaacttgttgagaaggcaaaagaagtaggatatgatgtgagcaaacttcacaagacacctcaagctgatcctccaccagatggtgaagatgccccaaaggacactaaaggattttggtggatcaaatcaatattgggaaaatagtcaatcttgaatatggtttttttaaaccaatagctaaataaattttacaatataaattatgaaaagttgtcttgtaaagaagaagttattattggttatatttcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="52199" stop="53767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52499" g_stop="52914" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52915" i_stop="53173" i_length="259">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53174" g_stop="53467" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="710" r_length="294" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E350084" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52499" e_stop="52914"/>
          <exon e_start="53174" e_stop="53467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCAAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGGGTAAGTTCACTAAACCTTAGTTGTTGATATTTTGAAAAACAACATATGGTTGGATATGAATATTTGGGAGGAAGCTAGTTACATAATGCTTATCATAAACTTAAGTGGAGTTAAGATACAATAACAACTTATTCAATAGTCTTATAAGTAAGTTATTCAGTATAGTTTTATAACATGTTTTCCGAGGAGATTTATCTATAGATATCTTCTGCTTGATCATATTATATGTTTTTAACAAAATGTTTATTCTGGTTTATAGATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTGGTGGATCAAATCAATATTGGGAAAATAGTCAATCTTGAATATGGTTTTTTTAAACCAATAGCTAAATAAATTTTACAATATAAATTATGAAAAGTTGTCTTGTAAAGAAGAGTTTATTATTGTTTATATTTCAAAT</genome_strand>
        <mrna_strand>AGACCAAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGG...................................................................................................................................................................................................................................................................ATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTGGTGGATCAAATCAATATTGGGAAAATAGTCAATCTTGAATATGGTTTTTTTAAACCAATAGCTAAATAAATTTTACAATATAAATTATGAAAAGTTGTCTTGTAAAGAAGAAGTTATTATTGGTTATATTTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E349723" ref_strand="+" ref_description="SGN-E349723 	[cTOS-3-A3]">
      <seq>agaccaaaacccttatactacactttgaaattttgcaaaaaaatatgaccacaaaagagatggaagtagtgaagaatttggatgttgaaaaatacatgggaagatggtatgaaattgcctcatttccatcaagaaatcaaccaaaagatggtgtaaacacaagagccacttacactttaaaccaagatggaacagtacatgtgttaaatgaaacatggagtggtggtaaaagaggttcaattgaagggactgcctataaagctgatccaaaaagtgatgaagcaaaacttaaagtgaaattttatatcccacctttcttgccaattattcctattgttggtgattattgggttttatatattgatgatgattatcaatatgctttgattggtcagcctagtaagaaatatctttggatattatgtaggcaaccacatcttgatgaagaaatatacaaccaacttgttgagaaggcaaaagaagtaggatatgatgtgagccaacttcacaagacacctcaagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="52199" stop="53584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52499" g_stop="52914" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52915" i_stop="53173" i_length="259">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53174" g_stop="53284" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="527" r_length="111" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E349723" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52499" e_stop="52914"/>
          <exon e_start="53174" e_stop="53284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCAAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGGGTAAGTTCACTAAACCTTAGTTGTTGATATTTTGAAAAACAACATATGGTTGGATATGAATATTTGGGAGGAAGCTAGTTACATAATGCTTATCATAAACTTAAGTGGAGTTAAGATACAATAACAACTTATTCAATAGTCTTATAAGTAAGTTATTCAGTATAGTTTTATAACATGTTTTCCGAGGAGATTTATCTATAGATATCTTCTGCTTGATCATATTATATGTTTTTAACAAAATGTTTATTCTGGTTTATAGATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGAT</genome_strand>
        <mrna_strand>AGACCAAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGG...................................................................................................................................................................................................................................................................ATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCCAACTTCACAAGACACCTCAAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E350717" ref_strand="+" ref_description="SGN-E350717 	[cTOS-7-O6]">
      <seq>agaccaaaacccttatactacactttgaaattttgcaaaaaaatatgaccacaaaagagatggaagtagtgaagaatttggatgttgaaaaatacatgggaagatggtatgaaattgcctcatttccatcaagaaatcaaccaaaagatggtgtaaacacaagagccacttacactttaaaccaagatggaacagtacatgtgttaaatgaaacatggagtggtggtaaaagaggttcaattgaagggactgcctataaagctgatccaaaaagtgatgaagcaaaacttaaagtgaaattttatatcccacctttcttgccaattattcctattgttggtgattattgggttttatatattgatgatgattatcaatatgctttgattggtcagcctagtaagaaatatctttggatattatgtaggcaaccacatcttgatgaagaaatatacaaccaacttgttgagaaggcaaaagaagtaggatatgatgtgagcaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="52199" stop="53562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52499" g_stop="52914" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52915" i_stop="53173" i_length="259">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53174" g_stop="53262" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="505" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E350717" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52499" e_stop="52914"/>
          <exon e_start="53174" e_stop="53262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCAAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGGGTAAGTTCACTAAACCTTAGTTGTTGATATTTTGAAAAACAACATATGGTTGGATATGAATATTTGGGAGGAAGCTAGTTACATAATGCTTATCATAAACTTAAGTGGAGTTAAGATACAATAACAACTTATTCAATAGTCTTATAAGTAAGTTATTCAGTATAGTTTTATAACATGTTTTCCGAGGAGATTTATCTATAGATATCTTCTGCTTGATCATATTATATGTTTTTAACAAAATGTTTATTCTGGTTTATAGATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACT</genome_strand>
        <mrna_strand>AGACCAAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGG...................................................................................................................................................................................................................................................................ATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E285810" ref_strand="+" ref_description="SGN-E285810 	[cLES-5-H13]">
      <seq>agaccaaaacccttatactacactttgaaattttgcaaaaaaatatgaccacaaaagagatggaagtagtgaagaatttggatgttgaaaaatacatgggaagatggtatgaaattgcctcatttccatcaagaaatcaaccaaaagatggtgtaaacacaagagccacttacactttaaaccaagatggaacagtacatgtgttaaatgaaacatggagtggtggtaaaagaggttcaattgaagggactgcctataaagctgatccaaaaagtgatgaagcaaaacttaaagtgaaattttatatcccacctttcttgccaattattcctattgttggtgattattgggttttatatattgatgatgattatcaatatgctttgattggtcagcctagtaagaaatatctttggatattatgtaggcaaccacatcttgatgaagaaatatacaaccaacttgttgagaaggcaaaagaagtaggatatgatgtgagcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="52199" stop="53561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52499" g_stop="52914" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52915" i_stop="53173" i_length="259">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53174" g_stop="53261" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="504" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E285810" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52499" e_stop="52914"/>
          <exon e_start="53174" e_stop="53261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCAAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGGGTAAGTTCACTAAACCTTAGTTGTTGATATTTTGAAAAACAACATATGGTTGGATATGAATATTTGGGAGGAAGCTAGTTACATAATGCTTATCATAAACTTAAGTGGAGTTAAGATACAATAACAACTTATTCAATAGTCTTATAAGTAAGTTATTCAGTATAGTTTTATAACATGTTTTCCGAGGAGATTTATCTATAGATATCTTCTGCTTGATCATATTATATGTTTTTAACAAAATGTTTATTCTGGTTTATAGATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAAC</genome_strand>
        <mrna_strand>AGACCAAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGG...................................................................................................................................................................................................................................................................ATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E207343" ref_strand="+" ref_description="SGN-E207343 	[cLEC-36-C17]">
      <seq>gaccaaaacccttatactacactttgaaattttgcaaaaaaatatgaccacaaaagagatggaagtagtgaagaatttggatgttgaaaaatacatgggaagatggtatgaaattgcctcatttccatcaagaaatcaaccaaaagatggtgtaaacacaagagccacttacactttaaaccaagatggaacagtacatgtgttaaatgaaacatggagtggtggtaaaagaggttcaattgaagggactgcctataaagctgatccaaaaagtgatgaagcaaaacttaaagtgaaattttatatcccacctttcttgccaattattcctattgttggtgattattgggttttatatattgatgatgattatcaatatgctttgattggtcagcctagtaagaaatatctttgggcaaccacatcttgatgaagaaatatacaaccaacttgttgagaaggcaaaagaagtaggatatgatgtgagcaaacttcacaagacacctcaagctgatcctccaccagatggtgaagatgccccaaaggacactaaaggattttggtggatcaaatcaatattgggaaaatagtcaatcttgaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="52200" stop="53673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52500" g_stop="52914" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52915" i_stop="53184" i_length="270">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53185" g_stop="53373" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="604" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E207343" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52500" e_stop="52914"/>
          <exon e_start="53185" e_stop="53373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCAAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGGGTAAGTTCACTAAACCTTAGTTGTTGATATTTTGAAAAACAACATATGGTTGGATATGAATATTTGGGAGGAAGCTAGTTACATAATGCTTATCATAAACTTAAGTGGAGTTAAGATACAATAACAACTTATTCAATAGTCTTATAAGTAAGTTATTCAGTATAGTTTTATAACATGTTTTCCGAGGAGATTTATCTATAGATATCTTCTGCTTGATCATATTATATGTTTTTAACAAAATGTTTATTCTGGTTTATAGATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTGGTGGATCAAATCAATATTGGGAAAATAGTCAATCTTGAATAT</genome_strand>
        <mrna_strand>GACCAAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGG..............................................................................................................................................................................................................................................................................GCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTGGTGGATCAAATCAATATTGGGAAAATAGTCAATCTTGAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E214339" ref_strand="+" ref_description="SGN-E214339 	[cLEC-77-C19]">
      <seq>gaccaaaacccttatactacactttgaaattttgcaaaaaaatatgaccacaaaagagatggaagtagtgaagaatttggatgttgaaaaatacatgggaagatggtatgaaattgcctcatttccatcaagaaatcaaccaaaagatggtgtaaacacaagagccacttacactttaaaccaagatggaacagtacatgtgttaaatgaaacatggagtggtggtaaaagaggttcaattgaagggactgcctataaagctgatccaaaaagtgatgaagcaaaacttaaagtgaaattttatatcccacctttcttgccaattattcctattgttggtgattattgggttttatatattgatgatgattatcaatatgctttgattggtcagcctagtaagaaatatctttggatattatgtaggcaaccacatcttgatgaagaaatatacaaccaacttgttgagaaggcaaaagaagtaggatatgatgtgagcaaacttcacaagacacctcaagctgatcctccaccagatggtgaagatgccccaaaggacactaaaggattttggtggatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="52200" stop="53640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52500" g_stop="52914" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52915" i_stop="53173" i_length="259">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53174" g_stop="53340" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="582" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E214339" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52500" e_stop="52914"/>
          <exon e_start="53174" e_stop="53340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCAAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGGGTAAGTTCACTAAACCTTAGTTGTTGATATTTTGAAAAACAACATATGGTTGGATATGAATATTTGGGAGGAAGCTAGTTACATAATGCTTATCATAAACTTAAGTGGAGTTAAGATACAATAACAACTTATTCAATAGTCTTATAAGTAAGTTATTCAGTATAGTTTTATAACATGTTTTCCGAGGAGATTTATCTATAGATATCTTCTGCTTGATCATATTATATGTTTTTAACAAAATGTTTATTCTGGTTTATAGATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTGGTGGATCAA</genome_strand>
        <mrna_strand>GACCAAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGG...................................................................................................................................................................................................................................................................ATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTGGTGGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E207058" ref_strand="+" ref_description="SGN-E207058 	[cLEC-30-I20]">
      <seq>gaccaaaacccttatactacactttgaaattttgcaaaaaaatatgaccacaaaagagatggaagtagtgaagaatttggatgttgaaaaatacatgggaagatggtatgaaattgcctcatttccatcaagaaatcaaccaaaagatggtgtaaacacaagagccacttacactttaaaccaagatggaacagtacatgtgttaaatgaaacatggagtggtggtaaaagaggttcaattgaagggactgcctataaagctgatccaaaaagtgatgaagcaaaacttaaagtgaaattttatatcccacctttcttgccaattattcctattgttggtgattattgggttttatatattgatgatgattatcaatatgctttgattggtcagcctagtaagaaatatctttggatattatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="52200" stop="53217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52500" g_stop="52914" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52915" i_stop="53173" i_length="259">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53174" g_stop="53182" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="424" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E207058" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52500" e_stop="52914"/>
          <exon e_start="53174" e_stop="53182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCAAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGGGTAAGTTCACTAAACCTTAGTTGTTGATATTTTGAAAAACAACATATGGTTGGATATGAATATTTGGGAGGAAGCTAGTTACATAATGCTTATCATAAACTTAAGTGGAGTTAAGATACAATAACAACTTATTCAATAGTCTTATAAGTAAGTTATTCAGTATAGTTTTATAACATGTTTTCCGAGGAGATTTATCTATAGATATCTTCTGCTTGATCATATTATATGTTTTTAACAAAATGTTTATTCTGGTTTATAGATATTATGT</genome_strand>
        <mrna_strand>GACCAAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGG...................................................................................................................................................................................................................................................................ATATTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E390636" ref_strand="+" ref_description="SGN-E390636 	[TUS-47-K10]">
      <seq>caaaacccttatactacactttgaaattttgcaaaaaaatatgaccacaaaagagatggaagtagtgaagaatttggatgttgaaaaatacatgggaagatggtatgaaattgcctcatttccatcaagaaatcaaccaaaagatggtgtaaacacaagagccacttacactttaaaccaagatggaacagtacatgtgttaaatgaaacatggagtggtggtaaaagaggttcaattgaagggactgcctataaagctgatccaaaaagtgatgaagcaaaacttaaagtgaaattttatatcccacctttcttgccaattattcctattgttggtgattattgggttttatatattgatgatgattatcaatatgctttgattggtcagcctagtaagaaatatctttggatattatgtaggcaaccacatcttgatgaagaaatatacaaccaacttgttgagaaggcaaaagaagtaggatatgatgtgagcaaacttcacaagacacctcaagctgatcctccaccagatggtgaagatgccccaaaggacactaaaggattttggtggatcaaatcaatattgggaaaatagtcaatcttgaatatggtttttttaaacccatagctaaataaattttaccatataaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="52203" stop="53719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52503" g_stop="52914" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52915" i_stop="53173" i_length="259">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53174" g_stop="53419" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="658" r_length="246" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E390636" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52503" e_stop="52914"/>
          <exon e_start="53174" e_stop="53419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGGGTAAGTTCACTAAACCTTAGTTGTTGATATTTTGAAAAACAACATATGGTTGGATATGAATATTTGGGAGGAAGCTAGTTACATAATGCTTATCATAAACTTAAGTGGAGTTAAGATACAATAACAACTTATTCAATAGTCTTATAAGTAAGTTATTCAGTATAGTTTTATAACATGTTTTCCGAGGAGATTTATCTATAGATATCTTCTGCTTGATCATATTATATGTTTTTAACAAAATGTTTATTCTGGTTTATAGATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTGGTGGATCAAATCAATATTGGGAAAATAGTCAATCTTGAATATGGTTTTTTTAAACCAATAGCTAAATAAATTTTACAATATAAATTAT</genome_strand>
        <mrna_strand>CAAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGG...................................................................................................................................................................................................................................................................ATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTGGTGGATCAAATCAATATTGGGAAAATAGTCAATCTTGAATATGGTTTTTTTAAACCCATAGCTAAATAAATTTTACCATATAAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E293116" ref_strand="+" ref_description="SGN-E293116 	[cLET-12-D7]">
      <seq>aaaacccttatactacactttgaaattttgcaaaaaaatatgaccacaaaagagatggaagtagtgaagaatttggatgttgaaaaatacatgggaagatggtatgaaattgcctcatttccatcaagaaatcaaccaaaagatggtgtaaacacaagagccacttacactttaaaccaagatggaacagtacatgtgttaaatgaaacatggagtggtggtaaaagaggttcaattgaagggactgcctataaagctgatccaaaaagtgatgaagcaaaacttaaagtgaaattttatatcccacctttcttgccaattattcctattgttggtgattattgggttttatatattgatgatgattatcaatatgctttgattggtcagcctagtaagaaatatctttggatattatgtaggcaaccacatcttgatgaagaaatatacaaccaacttgttgagaaggcaaaagaagtaggatatgatgtgagcaaacttcacaagacacctcaagctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="52204" stop="53585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52504" g_stop="52914" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52915" i_stop="53173" i_length="259">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53174" g_stop="53285" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="523" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E293116" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52504" e_stop="52914"/>
          <exon e_start="53174" e_stop="53285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGGGTAAGTTCACTAAACCTTAGTTGTTGATATTTTGAAAAACAACATATGGTTGGATATGAATATTTGGGAGGAAGCTAGTTACATAATGCTTATCATAAACTTAAGTGGAGTTAAGATACAATAACAACTTATTCAATAGTCTTATAAGTAAGTTATTCAGTATAGTTTTATAACATGTTTTCCGAGGAGATTTATCTATAGATATCTTCTGCTTGATCATATTATATGTTTTTAACAAAATGTTTATTCTGGTTTATAGATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATC</genome_strand>
        <mrna_strand>AAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGG...................................................................................................................................................................................................................................................................ATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E284550" ref_strand="+" ref_description="SGN-E284550 	[cLES-3-L9]">
      <seq>aaaacccttatactacactttgaaattttgcaaaaaaatatgaccacaaaagagatggaagtagtgaagaatttggatgttgaaaaatacatgggaagatggtatgaaattgcctcatttccatcaagaaatcaaccaaaagatggtgtaaacacaagagccacttacactttaaaccaagatggaacagtacatgtgttaaatgaaacatggagtggtggtaaaagaggttcaattgaagggactgcctataaagctgatccaaaaagtgatgaagcaaaacttaaagtgaaattttatatcccacctttcttgccaattattcctattgttggtgattattgggttttatatattgatgatgattatcaatatgctttgattggtcagcctagtaagaaatatctttggatattatgtaggcaaccacatcttgatgaagaaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="52204" stop="53511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52504" g_stop="52914" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52915" i_stop="53173" i_length="259">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53174" g_stop="53211" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="449" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E284550" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52504" e_stop="52914"/>
          <exon e_start="53174" e_stop="53211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGGGTAAGTTCACTAAACCTTAGTTGTTGATATTTTGAAAAACAACATATGGTTGGATATGAATATTTGGGAGGAAGCTAGTTACATAATGCTTATCATAAACTTAAGTGGAGTTAAGATACAATAACAACTTATTCAATAGTCTTATAAGTAAGTTATTCAGTATAGTTTTATAACATGTTTTCCGAGGAGATTTATCTATAGATATCTTCTGCTTGATCATATTATATGTTTTTAACAAAATGTTTATTCTGGTTTATAGATATTATGTAGGCAACCACATCTTGATGAAGAAATATA</genome_strand>
        <mrna_strand>AAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGG...................................................................................................................................................................................................................................................................ATATTATGTAGGCAACCACATCTTGATGAAGAAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E208840" ref_strand="+" ref_description="SGN-E208840 	[cLEC-51-M11]">
      <seq>ttatactacactttgaaattttgcaaaaaaatatgaccacaaaagagatggaagtagtgaagaatttggatgttgaaaaatacatgggaagatggtatgaaattgcctcatttccatcaagaaatcaaccaaaagatggtgtaaacacaagagccacttacactttaaaccaagatggaacagtacatgtgttaaatgaaacatggagtggtggtaaaagaggttcaattgaagggactgcctataaagctgatccaaaaagtgatgaagcaaaacttaaagtgaaattttatatcccacctttcttgccaattattcctattgttggtgattattgggttttatatattgatgatgattatcaatatgctttgattggtcagcctagtaagaaatatctttggatattatgtaggcaaccacatcttgatgaagaaatatacaaccaacttgttgagaaggcaaaagaagtaggatatgatgtgagcaaacttcacaagacacctcaagctgatcctccaccagatggtgaagatgccccaaaggacactaaaggattttgggggatcaaatcaatattgggaaaataggcaaatcttgaatatggttttttttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="52211" stop="53685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52511" g_stop="52914" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52915" i_stop="53173" i_length="259">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53174" g_stop="53386" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="618" r_length="214" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E208840" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52511" e_stop="52914"/>
          <exon e_start="53174" e_stop="53386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGGGTAAGTTCACTAAACCTTAGTTGTTGATATTTTGAAAAACAACATATGGTTGGATATGAATATTTGGGAGGAAGCTAGTTACATAATGCTTATCATAAACTTAAGTGGAGTTAAGATACAATAACAACTTATTCAATAGTCTTATAAGTAAGTTATTCAGTATAGTTTTATAACATGTTTTCCGAGGAGATTTATCTATAGATATCTTCTGCTTGATCATATTATATGTTTTTAACAAAATGTTTATTCTGGTTTATAGATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTGGTGGATCAAATCAATATTGGGAAAATAGTC-AATCTTGAATATGGTTTTTTTAAAC</genome_strand>
        <mrna_strand>TTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGG...................................................................................................................................................................................................................................................................ATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTGGGGGATCAAATCAATATTGGGAAAATAGGCAAATCTTGAATATGGTTTTTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E286696" ref_strand="+" ref_description="SGN-E286696 	[cLES-14-O15]">
      <seq>acactttgaaattttgcaaaaaaatatgaccacaaaagagatggaagtagtgaagaatttggatgttgaaaaatacatgggaagatggtatgaaattgcctcatttccatcaagaaatcaaccaaaagatggtgtaaacacaagagccacttacactttaaaccaagatggaacagtacatgtgttaaatgaaacatggagtggtggtaaaagaggttcaattgaagggactgcctataaagctgatccaaaaagtgatgaagcaaaacttaaagtgaaattttatatcccacctttcttgccaattattcctattgttggtgattattgggttttatatattgatgatgattatcaatatgctttgattggtcagcctagtaagaaatatctttggatattatgtaggcaaccacatcttgatgaagaaatatacaaccaacttgttgagaaggcaaaagaagtaggatatgatgtgagcaaacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="52218" stop="53564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52518" g_stop="52914" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52915" i_stop="53173" i_length="259">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53174" g_stop="53264" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="488" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E286696" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52518" e_stop="52914"/>
          <exon e_start="53174" e_stop="53264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGGGTAAGTTCACTAAACCTTAGTTGTTGATATTTTGAAAAACAACATATGGTTGGATATGAATATTTGGGAGGAAGCTAGTTACATAATGCTTATCATAAACTTAAGTGGAGTTAAGATACAATAACAACTTATTCAATAGTCTTATAAGTAAGTTATTCAGTATAGTTTTATAACATGTTTTCCGAGGAGATTTATCTATAGATATCTTCTGCTTGATCATATTATATGTTTTTAACAAAATGTTTATTCTGGTTTATAGATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTC</genome_strand>
        <mrna_strand>ACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGG...................................................................................................................................................................................................................................................................ATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E336457" ref_strand="+" ref_description="SGN-E336457 	[cTOE-4-O10]">
      <seq>aaaatatgaccacaaaagagatggaagtggtgaagaatttggatgttgaaaaatacatgggaagatggtatgaaattgcctcatttccatcnngnnagtcggccaaaagatggtgtaaacacaagagccacttacactttaaaccaagatggaacagtacatgtgttaaatgaaacatggagtggtggtaaaagaggttcaattgaagggactgcctataaagctgatccaaaaagtgatgaagcaaaacttaaagtgaaattttatatcccacctttcttgccaattattcctattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="52238" stop="53135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52538" g_stop="52835" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E336457" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52538" e_stop="52835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAA-TCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGT</genome_strand>
        <mrna_strand>AAAATATGACCACAAAAGAGATGGAAGTGGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCNNGNNAGTCGGCCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E209359" ref_strand="+" ref_description="SGN-E209359 	[cLEC-53-I11]">
      <seq>tgaaaaatacatgggaagatggtatgaaattgcctcatttccatcaagaaatcaaccaaaagatggtgtaaacacaagagccacttacactttaaaccaagatggaacagtacatgtgttaaatgaaacatggagtggtggtaaaagatgttcaattgaagggactgcctataaagctgatccaaaaagtgatgaagcaaaacttacagtgaaattttatatcccacctttcttgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="52284" stop="53121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52584" g_stop="52821" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E209359" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52584" e_stop="52821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCA</genome_strand>
        <mrna_strand>TGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGATGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTACAGTGAAATTTTATATCCCACCTTTCTTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E390872" ref_strand="-" ref_description="SGN-E390872 	[TUS-47-K10]">
      <seq>ggggtggtaaaaggggttcaattgaagggaatgcctataaagctgatccaaaaagggttgaagcaaaacttaaagtgaaattttatttcccaccttttttgccaatttttcctattgttggtgattattgggttttatatagtgatgatgattatcaataggctttgattggtcagcctagtaagaaatttttttggattttatgtgggcaaccacttgttgatgaagaaatatacaaccaatttgttgggaaggcaaaagaagtgggatatgatgtgggcaaaattcacaagacacctcaaggtgatcctcccccagttggtgaagatgccccaaaggaccctaaagggttttggtggatcaaatcaatattgggaaaatagtcaattttgaatatggtttttttaaaccaatagttaaataaattttccaatataaattactgaaaagttgttttgtaaagaagagtttattattgtttttatttcaaatgttgtaattttttaaggggtgtcctttttgtgttggtagcaagtatagcacgtgtaatattgtgttgttgcaacttgtaagagagttttttgttaatttttcaatataaattatgaaatgttgaatataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="52418" stop="64804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52718" g_stop="52914" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52915" i_stop="53173" i_length="259">
            <donor d_prob="0.954" d_score="0.94"/>
            <acceptor a_prob="0.976" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53174" g_stop="53595" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="620" r_length="423" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53596" i_stop="61194" i_length="7599">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.56"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61195" g_stop="61235" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="661" r_length="41" r_score="0.561"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E390872" ref_strand="-">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390872" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="52718" e_stop="52914"/>
          <exon e_start="53174" e_stop="53595"/>
          <exon e_start="61195" e_stop="61235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGGGTAAGTTCACTAAACCTTAGTTGTTGATATTTTGAAAAACAACATATGGTTGGATATGAATATTTGGGAGGAAGCTAGTTACATAATGCTTATCATAAACTTAAGTGGAGTTAAGATACAATAACAACTTATTCAATAGTCTTATAAGTAAGTTATTCAGTATAGTTTTATAACATGTTTTCCGAGGAGATTTATCTATAGATATCTTCTGCTTGATCATATTATATGTTTTTAACAAAATGTTTATTCTGGTTTATAGATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTGGTGGATCAAATCAATATTGGGAAAATAGTCAATCTTGAATATGGTTTTTTTAAACCAATAGCTAAATAAATTTTACAATATAAATTA-TGAAAAGTTGTCTTGTAAAGAAGAGTTTATTATTGTTTATATTTCAAATGTTGTAATTTTCTAAGGTGTGTCCTTCTTGTGTTGGTAGCAAGTATAGCATGTGTAATATTGTGTTGTTGCAACTTGTAAGAGAGTTTGTTGTTAATTTTACAATATAAATTATGAAATGTTGAATATATATAGTTCGTTTCGTTCAAATGAAGTTTCTTGAATTTTTATACAAGTGTTGTTTTATAATTAATTATTTAGTACATCTTAACTATTAATATTCTTTCCTCTTTTACTCTTCATTTCGACGATTTTCGTGTGCTATAGCACATCATTTTTTGGGTGATCCGAATTTCGACGTAAAAAATGCCAAATTTTTTTGTGGACGTCCGTCAAGACCTTGTCTATGCATATGGTTGGCCATCACGGCTTGTCCGACCCATTTGGAAGGTCAAACAAGCCCCGAAGCGAGCATACCCCTCATTTCGACGATTTTCTGTGCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATACCAAATTTTTTCGTGGACGTCCGTCAAAACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCAAAGCAGCATACGCCTCATTTCGACAATTTTCGTGTGCTATAGCACATCATTTTTTGGGTGATCCGGATTCTGACGTCAAAAATGCCAAAAAATTTTCGTGGATGTTCGTCAAAACCTTGTCTATGCATACGGTTAGCCATCACGGCTTGTCCGGACCATTTGGAGGGTCAAACGAGCCCCAAAGCGAACATACGCCTCCTTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGAACCGGATTCCGACGTCAAAAATGCAAAAAATTTTCGTGGACGTCCATCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGACCCATTTGGAGGGTCAAACGAGCCCCAAAGCAAGCATACGCCTCATTTCGATGATTTTCGTGTGCCATAGTACATTTTTTGGGTTATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTACGCTATAGCACACAATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTTTGGATGTCCGTCAATACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATCTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTTTAGCACACCATTTTTTGGGTGATCCGGATTCCGATGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTAGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGGACACCACTTTTTGGGTGATCCGGATTACGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACACCTCATTTCGATGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCAAATTTCGACATCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGATTGGCCATCACGGCTTGTCCAGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTTTAGCACACCATTTTTTGGGTGATCCGGATTCCGATGTCAAAAATGTCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTGTGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTTGACAATTTTCATGTGCTATAGCTCACCATTTTTATGGTGATCCGGATTCCGACGTCAAAAATGCAAAAAATTTTCGTGGACGTCCAACATGACCTTGTCTATGCATACGGATGGCCATCACGGCTTGTCCAGCCAATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGAGTTTCATGTGCTATAGCGCACCATTTTTTGGGTGATCTAAATTTCGACGTCAAAAATACCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCAATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCATACCATTTTTAAGGTGATCCGGATTCCGACGTCAAAAATGTCAAATTTTTTCTTGGACGTCCGTCAAGACCTTGTCTATGCATATGGTTGGACATCACGGCTTGTCCGACTCATTTGGAGGGTCAAACGAGCCCCGAAGCAAGCATACGTCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGATTATCCGGATTCCGATGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACTAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCTTGGACGTCCGTCAAGACCTTGTCTATGCATACAGTTGGCCATCACGGCTTGTCCGGCTCATTTAGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCACTTTTTGGGTGATCCGGATTCCGATGTCAAAAATGCCAAATTTTTTTGTGGACGTCCGTCACGACCTTGTCTATGCATACGGTTGGCCATCACGGCTAGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCTCATTTGGAGGGTCAAACGAGCCACAACGAGAATATACCTCTTTTCGAGAATATTTGTGTGTGCTACACCATATCATGGGTGATCCGGATTCCGACGTCAAAAATGCCATGTCTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTTTCCGGCCCATTAGGAGGGTCAGACGAGCCCCGAAGCGAGCATACGCCTTATTTCGACAATTTTTGTGTGCTATAGCACACCATTTTTTGGATGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTTGTGGACGTCCGTCAAGACCTTTCCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTAATCCGGATTCCGACGTCAAAAATGCAAAATTTGTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACCGTTGGCCATCACGGCTTGTCCAGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTACGCTATAGCACACCATTATTTAGGTGATCTAGATTTCGACGTCAAAAATGCCAAAATTTTTCGTGGACGTCCGTCAAGACCTTTTCTATGCATACGGTTGGCCATCACGGCTTGTCCGACCCATTTGGAGGGTCAAACAAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCAGATTCCGACGTCAAAAATGCCAAATTTTTTTGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGGTTGCCATCACGTCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCAAGCATACGCCTCATTTCGATGATTTTCGTGTGCCATAGTACATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTAGCCATCACGGCTTGTACGGCTCATTTGGAGGGTCAAACGAGCCCCGAAGAGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTGAGGTGATCCACACTCCAACGTCAAAAATGCAAAAATTTTTCGTGGACGTCCGTCAAGACCTTTTCTATGCATACGGTTGGCCATCACGGCTTGTTCGGCCCATTTGGAAGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCACTTTTTGGGTGATCCGAATTTCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCAGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACAACATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACATCCGTCAAGACCTGGTCTATGCATACGGTTGGCCATCACGGCTTGTACGACCCATTTGGAGGGTCAAACGAGCCCCGAAGAGAGCATACGCCTCACTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTGAGGTGATCCACACTTCAACGTCAAAAATGCCAAATTTTTTCGTGGACGTCTGTCAAGACCTTTTCTATGCATACAGTTGGCCATCACGGCTTGTTCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCATGTGCTATAGCACACCACTTTTTGGGTGATCCGAATTCCGACGTCAAAAATGCCAAATTTTTTCGTGAACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGTCATCCCGGCTTTTCCGACCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCTGAATTCCGACGTAAAAAATGCCAATTTTTTTCGTGGACGTCCGTCAAGACCTTGTTTATGCATACGGTTGGCCATCACGGCTAGTCCGTCCCATTTGGAGGGTCAAACGAGCCCCGAAGAGAGCATACGCCTCATTTCGACGATTTTTGTGTGCTATAGCACACCATTTTTTGGGTGATCCGAATTCCGACGTAATAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATAACGGCTTGTCCGGCCCATTTGGAGGGTCAAGCAAGCCCCGAAGCAACCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTTGTGTACGTCATTTAAGACCTTATCTATGCATACGGGTTGCCATCACGGCTTGTCCTACCCATTTGGAAGGTCAAACGAGCCCTGAAGCGAGCAATCCCCTCATTTAGACGATTTTCGTGTGCTATAGCACACCATTTTATGGGTGATCCGGATTCCGACGTCAAAAATTCCAAATTTTTTCGTGGACGTCCATCAATACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTTCGACCCATTTGGAAGGTCAAACGAGCCCCGAAGCGAGCATACCCCTTATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATTCTAAATTTTTTCGTTGACATCCGTCAAGACCTTGTCTATGTGAACGGTTGGCCATCACGGCTTGTCCGAACCATTTGGAAGGTCAAACGAGCCCCGAAGCAAGTATACCCCTCATTGCGACGATTTTTGTGTGCTATAGCACACCAGTTTTTGGGTGATCCGGATTACGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAACACCTTGTCTATGCATACAGTTGGCCATCACGGCTTGTCCGACCCATTTGGAAGGTCAAACGAGCCCCGAAGCGAGCATACCCCTCATTTCAACGATTTTCATGTGCTATAGCACACCATTTTTTTGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCATCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGGTTGTTCGACCCATTTGGAATGTCAAACGAACCTCGAAGCGAGCATACCCCTCATTTCGATGATTTTCGTGTTCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGTCAAATTTTTTCGTGGAAGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGACCTATTTGGAATGTCAAACGATCCCCGAAGCGAGCATACCCCTTTTTTCGACGATTTTTGTGTGCTATAGCACACTATTTTTTGGGTGATCCGGATTCTGATGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGACCCATTTGGAAGGTCAAACGAGCCCCGAAGCGAGCATACCCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCAGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGATTGGCCATCACGGCTTGTCCAACCCATTTGGAAGGTCAAACGAGCCCCGAAGCGAGCATACCCTTCGTTTCGACGATTTTCGTGTATTATAGCACATCATTTTTTGGGTGATCCGGATTCTGACATAAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGTCATCACGGCTTGTCCGATCCATTTGGAAGGTCAAACGAGCCCCGAAGCAATTATACCCCTCATTTCGACGATTTTCGTGTGCTATAGCAAACCATTTTTTGGGTTATCCGGATTCCGACGTCAAAAATGCAAAAAAAATTCGTTGACGTTCGTCAAGACCTTGTCTATGCATATGGTTGGCCATCAAGGCTTGTCCGATCCATTTGGAAGGTGAAACGAGTCCCGAAGCGAGCATACCCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCTGTCATGACCTTGTCTATGCATACGGTTGTCCATCACGGCTTGTCCGACCCATTTGGAAGGTCAAACGATAGGAGGATGGTGACATTTCATGGAATATGTTAAAAGAGTATGTAGATAAATAGTCTGTAATAAGTTTGACATATGAAACTCACATCTAATAGTTCATATAGAAAATTCGTACAATACCATAAAACTTAAAAATTTTAAAATA</genome_strand>
        <mrna_strand>GGGGTGGTAAAAGGGGTTCAATTGAAGGGAATGCCTATAAAGCTGATCCAAAAAGGGTTGAAGCAAAACTTAAAGTGAAATTTTATTTCCCACCTTTTTTGCCAATTTTTCCTATTGTTGGTGATTATTGGGTTTTATATAGTGATGATGATTATCAATAGGCTTTGATTGGTCAGCCTAGTAAGAAATTTTTTTGG...................................................................................................................................................................................................................................................................ATTTTATGTGGGCAACCACTTGTTGATGAAGAAATATACAACCAATTTGTTGGGAAGGCAAAAGAAGTGGGATATGATGTGGGCAAAATTCACAAGACACCTCAAGGTGATCCTCCCCCAGTTGGTGAAGATGCCCCAAAGGACCCTAAAGGGTTTTGGTGGATCAAATCAATATTGGGAAAATAGTCAATTTTGAATATGGTTTTTTTAAACCAATAGTTAAATAAATTTTCCAATATAAATTACTGAAAAGTTGTTTTGTAAAGAAGAGTTTATTATTGTTTTTATTTCAAATGTTGTAATTTTTTAAGGGGTGTCCTTTTTGTGTTGGTAGCAAGTATAGCACGTGTAATATTGTGTTGTTGCAACTTGTAAGAGAGTTTTTTGTTAATTTTTCAATATAAATTATGAAATGTTGAATAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E288813" ref_strand="-" ref_description="SGN-E288813 	[cLES-17-B11]">
      <seq>atccaaaaagtgatgaagcaaaacttaaagtgaaattttatatcccacttttcttgccaattattcctattgttggtgattattgggttttatatattgatgatgattatcaatatgctttgattggtcagcctagtaagaaatatctttggatattatgtaggcaaccacatcttgatgaagaaatatacaaccaacttgttgagaaggcaaaagaagtaggatatgatgtgagcaaacttcacaagacacctcaagctgatcctccaccagatggtgaagatgccccaaaggacactaaagtattttggtggatcaaatcaatattgggaaaatagtcaatcttgaatatggtttttttaaaccaatagctaaataaattttacaatataaattatgaaaagttgtcttgtaaagaagagtttattattgtttatatttcaaatgttgtaattttctaaggtgtgtccttcttgtgttggtagcaagtatagcatgtgtaatattgtgttgttgcaacttgtaagagagtttgttgttaattttacaatataaattatgaaatgttgaatatatatagttcgtttcgttcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="52463" stop="53920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52763" g_stop="52914" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52915" i_stop="53173" i_length="259">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53174" g_stop="53620" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="599" r_length="447" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E288813" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288813" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="52763" e_stop="52914"/>
          <exon e_start="53174" e_stop="53620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGGGTAAGTTCACTAAACCTTAGTTGTTGATATTTTGAAAAACAACATATGGTTGGATATGAATATTTGGGAGGAAGCTAGTTACATAATGCTTATCATAAACTTAAGTGGAGTTAAGATACAATAACAACTTATTCAATAGTCTTATAAGTAAGTTATTCAGTATAGTTTTATAACATGTTTTCCGAGGAGATTTATCTATAGATATCTTCTGCTTGATCATATTATATGTTTTTAACAAAATGTTTATTCTGGTTTATAGATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTGGTGGATCAAATCAATATTGGGAAAATAGTCAATCTTGAATATGGTTTTTTTAAACCAATAGCTAAATAAATTTTACAATATAAATTATGAAAAGTTGTCTTGTAAAGAAGAGTTTATTATTGTTTATATTTCAAATGTTGTAATTTTCTAAGGTGTGTCCTTCTTGTGTTGGTAGCAAGTATAGCATGTGTAATATTGTGTTGTTGCAACTTGTAAGAGAGTTTGTTGTTAATTTTACAATATAAATTATGAAATGTTGAATATATATAGTTCGTTTCGTTCAAATGAA</genome_strand>
        <mrna_strand>ATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACTTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGG...................................................................................................................................................................................................................................................................ATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGTATTTTGGTGGATCAAATCAATATTGGGAAAATAGTCAATCTTGAATATGGTTTTTTTAAACCAATAGCTAAATAAATTTTACAATATAAATTATGAAAAGTTGTCTTGTAAAGAAGAGTTTATTATTGTTTATATTTCAAATGTTGTAATTTTCTAAGGTGTGTCCTTCTTGTGTTGGTAGCAAGTATAGCATGTGTAATATTGTGTTGTTGCAACTTGTAAGAGAGTTTGTTGTTAATTTTACAATATAAATTATGAAATGTTGAATATATATAGTTCGTTTCGTTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E368909" ref_strand="-" ref_description="SGN-E368909 	[TUS-26-O7]">
      <seq>gggtgaattatgaggttttaaaatattatgaatgataatcaatatgctttgattggtcagcctagtaaagtaatatctttggatattatgtaggcaaccacatcttgatgaaagaaatatacaaccaacttgttgagaaggcaaaagaagtaggatatgatgtgagcaaacttcacaagacacctcaagctgatcctccaccagatggtgaagatgccccaaaggacactaaaggattttggtggatcaaatcaatattgggaaaatagtcaatcttgaatatggtttttttaaaccaatagctaaataaattttacaatataaattatgaaaagttgtcttgtaaagaagagtttattattgtttatatttcaaatgttgtaattttctaaggtgtgtccttcttgtgttggtagcaagtatagcatgtgtaatattgtgttgttgcaacttgtaagagagtttgttgttaattttacaatataaattatgaaatgttgaatatatatagttcgtttcgttcaaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="52537" stop="64813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52836" g_stop="52914" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.797"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52915" i_stop="53173" i_length="259">
            <donor d_prob="0.954" d_score="0.92"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53174" g_stop="53620" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="529" r_length="447" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53621" i_stop="61957" i_length="8337">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61958" g_stop="61980" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="552" r_length="23" r_score="0.696"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E368909" ref_strand="-">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368909" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="52836" e_stop="52914"/>
          <exon e_start="53174" e_stop="53620"/>
          <exon e_start="61958" e_stop="61980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTG-ATTATTGGGTTTTATA-TATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGT-AAGAAATATCTTTGGGTAAGTTCACTAAACCTTAGTTGTTGATATTTTGAAAAACAACATATGGTTGGATATGAATATTTGGGAGGAAGCTAGTTACATAATGCTTATCATAAACTTAAGTGGAGTTAAGATACAATAACAACTTATTCAATAGTCTTATAAGTAAGTTATTCAGTATAGTTTTATAACATGTTTTCCGAGGAGATTTATCTATAGATATCTTCTGCTTGATCATATTATATGTTTTTAACAAAATGTTTATTCTGGTTTATAGATATTATGTAGGCAACCACATCTTGATG-AAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTGGTGGATCAAATCAATATTGGGAAAATAGTCAATCTTGAATATGGTTTTTTTAAACCAATAGCTAAATAAATTTTACAATATAAATTATGAAAAGTTGTCTTGTAAAGAAGAGTTTATTATTGTTTATATTTCAAATGTTGTAATTTTCTAAGGTGTGTCCTTCTTGTGTTGGTAGCAAGTATAGCATGTGTAATATTGTGTTGTTGCAACTTGTAAGAGAGTTTGTTGTTAATTTTACAATATAAATTATGAAATGTTGAATATATATAGTTCGTTTCGTTCAAATGAAGTTTCTTGAATTTTTATACAAGTGTTGTTTTATAATTAATTATTTAGTACATCTTAACTATTAATATTCTTTCCTCTTTTACTCTTCATTTCGACGATTTTCGTGTGCTATAGCACATCATTTTTTGGGTGATCCGAATTTCGACGTAAAAAATGCCAAATTTTTTTGTGGACGTCCGTCAAGACCTTGTCTATGCATATGGTTGGCCATCACGGCTTGTCCGACCCATTTGGAAGGTCAAACAAGCCCCGAAGCGAGCATACCCCTCATTTCGACGATTTTCTGTGCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATACCAAATTTTTTCGTGGACGTCCGTCAAAACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCAAAGCAGCATACGCCTCATTTCGACAATTTTCGTGTGCTATAGCACATCATTTTTTGGGTGATCCGGATTCTGACGTCAAAAATGCCAAAAAATTTTCGTGGATGTTCGTCAAAACCTTGTCTATGCATACGGTTAGCCATCACGGCTTGTCCGGACCATTTGGAGGGTCAAACGAGCCCCAAAGCGAACATACGCCTCCTTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGAACCGGATTCCGACGTCAAAAATGCAAAAAATTTTCGTGGACGTCCATCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGACCCATTTGGAGGGTCAAACGAGCCCCAAAGCAAGCATACGCCTCATTTCGATGATTTTCGTGTGCCATAGTACATTTTTTGGGTTATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTACGCTATAGCACACAATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTTTGGATGTCCGTCAATACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATCTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTTTAGCACACCATTTTTTGGGTGATCCGGATTCCGATGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTAGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGGACACCACTTTTTGGGTGATCCGGATTACGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACACCTCATTTCGATGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCAAATTTCGACATCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGATTGGCCATCACGGCTTGTCCAGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTTTAGCACACCATTTTTTGGGTGATCCGGATTCCGATGTCAAAAATGTCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTGTGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTTGACAATTTTCATGTGCTATAGCTCACCATTTTTATGGTGATCCGGATTCCGACGTCAAAAATGCAAAAAATTTTCGTGGACGTCCAACATGACCTTGTCTATGCATACGGATGGCCATCACGGCTTGTCCAGCCAATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGAGTTTCATGTGCTATAGCGCACCATTTTTTGGGTGATCTAAATTTCGACGTCAAAAATACCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCAATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCATACCATTTTTAAGGTGATCCGGATTCCGACGTCAAAAATGTCAAATTTTTTCTTGGACGTCCGTCAAGACCTTGTCTATGCATATGGTTGGACATCACGGCTTGTCCGACTCATTTGGAGGGTCAAACGAGCCCCGAAGCAAGCATACGTCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGATTATCCGGATTCCGATGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACTAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCTTGGACGTCCGTCAAGACCTTGTCTATGCATACAGTTGGCCATCACGGCTTGTCCGGCTCATTTAGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCACTTTTTGGGTGATCCGGATTCCGATGTCAAAAATGCCAAATTTTTTTGTGGACGTCCGTCACGACCTTGTCTATGCATACGGTTGGCCATCACGGCTAGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCTCATTTGGAGGGTCAAACGAGCCACAACGAGAATATACCTCTTTTCGAGAATATTTGTGTGTGCTACACCATATCATGGGTGATCCGGATTCCGACGTCAAAAATGCCATGTCTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTTTCCGGCCCATTAGGAGGGTCAGACGAGCCCCGAAGCGAGCATACGCCTTATTTCGACAATTTTTGTGTGCTATAGCACACCATTTTTTGGATGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTTGTGGACGTCCGTCAAGACCTTTCCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTAATCCGGATTCCGACGTCAAAAATGCAAAATTTGTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACCGTTGGCCATCACGGCTTGTCCAGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTACGCTATAGCACACCATTATTTAGGTGATCTAGATTTCGACGTCAAAAATGCCAAAATTTTTCGTGGACGTCCGTCAAGACCTTTTCTATGCATACGGTTGGCCATCACGGCTTGTCCGACCCATTTGGAGGGTCAAACAAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCAGATTCCGACGTCAAAAATGCCAAATTTTTTTGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGGTTGCCATCACGTCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCAAGCATACGCCTCATTTCGATGATTTTCGTGTGCCATAGTACATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTAGCCATCACGGCTTGTACGGCTCATTTGGAGGGTCAAACGAGCCCCGAAGAGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTGAGGTGATCCACACTCCAACGTCAAAAATGCAAAAATTTTTCGTGGACGTCCGTCAAGACCTTTTCTATGCATACGGTTGGCCATCACGGCTTGTTCGGCCCATTTGGAAGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCACTTTTTGGGTGATCCGAATTTCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCAGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACAACATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACATCCGTCAAGACCTGGTCTATGCATACGGTTGGCCATCACGGCTTGTACGACCCATTTGGAGGGTCAAACGAGCCCCGAAGAGAGCATACGCCTCACTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTGAGGTGATCCACACTTCAACGTCAAAAATGCCAAATTTTTTCGTGGACGTCTGTCAAGACCTTTTCTATGCATACAGTTGGCCATCACGGCTTGTTCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCATGTGCTATAGCACACCACTTTTTGGGTGATCCGAATTCCGACGTCAAAAATGCCAAATTTTTTCGTGAACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGTCATCCCGGCTTTTCCGACCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCTGAATTCCGACGTAAAAAATGCCAATTTTTTTCGTGGACGTCCGTCAAGACCTTGTTTATGCATACGGTTGGCCATCACGGCTAGTCCGTCCCATTTGGAGGGTCAAACGAGCCCCGAAGAGAGCATACGCCTCATTTCGACGATTTTTGTGTGCTATAGCACACCATTTTTTGGGTGATCCGAATTCCGACGTAATAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATAACGGCTTGTCCGGCCCATTTGGAGGGTCAAGCAAGCCCCGAAGCAACCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTTGTGTACGTCATTTAAGACCTTATCTATGCATACGGGTTGCCATCACGGCTTGTCCTACCCATTTGGAAGGTCAAACGAGCCCTGAAGCGAGCAATCCCCTCATTTAGACGATTTTCGTGTGCTATAGCACACCATTTTATGGGTGATCCGGATTCCGACGTCAAAAATTCCAAATTTTTTCGTGGACGTCCATCAATACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTTCGACCCATTTGGAAGGTCAAACGAGCCCCGAAGCGAGCATACCCCTTATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATTCTAAATTTTTTCGTTGACATCCGTCAAGACCTTGTCTATGTGAACGGTTGGCCATCACGGCTTGTCCGAACCATTTGGAAGGTCAAACGAGCCCCGAAGCAAGTATACCCCTCATTGCGACGATTTTTGTGTGCTATAGCACACCAGTTTTTGGGTGATCCGGATTACGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAACACCTTGTCTATGCATACAGTTGGCCATCACGGCTTGTCCGACCCATTTGGAAGGTCAAACGAGCCCCGAAGCGAGCATACCCCTCATTTCAACGATTTTCATGTGCTATAGCACACCATTTTTTTGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCATCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGGTTGTTCGACCCATTTGGAATGTCAAACGAACCTCGAAGCGAGCATACCCCTCATTTCGATGATTTTCGTGTTCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGTCAAATTTTTTCGTGGAAGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGACCTATTTGGAATGTCAAACGATCCCCGAAGCGAGCATACCCCTTTTTTCGACGATTTTTGTGTGCTATAGCACACTATTTTTTGGGTGATCCGGATTCTGATGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGACCCATTTGGAAGGTCAAACGAGCCCCGAAGCGAGCATACCCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCAGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGATTGGCCATCACGGCTTGTCCAACCCATTTGGAAGGTCAAACGAGCCCCGAAGCGAGCATACCCTTCGTTTCGACGATTTTCGTGTATTATAGCACATCATTTTTTGGGTGATCCGGATTCTGACATAAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGTCATCACGGCTTGTCCGATCCATTTGGAAGGTCAAACGAGCCCCGAAGCAATTATACCCCTCATTTCGACGATTTTCGTGTGCTATAGCAAACCATTTTTTGGGTTATCCGGATTCCGACGTCAAAAATGCAAAAAAAATTCGTTGACGTTCGTCAAGACCTTGTCTATGCATATGGTTGGCCATCAAGGCTTGTCCGATCCATTTGGAAGGTGAAACGAGTCCCGAAGCGAGCATACCCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCTGTCATGACCTTGTCTATGCATACGGTTGTCCATCACGGCTTGTCCGACCCATTTGGAAGGTCAAACGATAGGAGGATGGTGACATTTCATGGAATATGTTAAAAGAGTATGTAGATAAATAGTCTGTAATAAGTTTGACATATGAAACTCACATCTAATAGTTCATATAGAAAATTCGTACAATACCATAAAACTTAAAAATTTTAAAATATATTTTTTTAGCGTATTCTTAGCTATTAACTTCCTTTTTTTTTTAATGTAAACTTTGGATTCGTTTGAACTCGTGAAGTTTCTATGGATAGAGACATTATTGGATTTGGTGTAAACTTAGTGACTAAGAATACCATGTTAGCCTCAAGTTTCCACATTGTTGTCCCTACAATTGTTTGATACAATCCGACTTTATAATATTATACCAAATATTAAGTTTCCTTTGAAATCGATCTTTCATATTATATTATGTCATCTACGATAAAATACTTAAAGAGATGACACCGGCGTACAGAGATTTGAAGGTACTTGCTACCTCTAGTAGTATAGCATACCACTATACAATTACTAATGGCTAATGTCATTAGCTAGCTTTTGAAAATAAGTTACGCTAAGGCTCACTTTTATCATGATCAGAATTAGATCCATCTCAATTTTTTGATTTACCCGATGACTCCATCCTCCAGTATGAAGGCCTGTCATGAGCATGGAGTGCAGGGGTATCAAATTTGTCTCACATTGGTTGCGGAATAGGGATTTTGGGTATTCAGTCTCAGCATACATCAAAAATTGTGTCAAATGACAGGAAGCCAAGACATCAGAAACAGGAAATATGTTATATAGTAACTACATGTAGGTGAACATCATCACATCACAACTTTCAAACAACATTATCAATCTGAGACTGACTCTTTCTCTTCATCTGAGATCATATTACAATAGAGAACAAAAAGAATTCAAGCTTA</genome_strand>
        <mrna_strand>GGGTGAATTATGAGGTTTTAAAATATTATGAATGATAATCAATATGCTTTGATTGGTCAGCCTAGTAAAGTAATATCTTTGG...................................................................................................................................................................................................................................................................ATATTATGTAGGCAACCACATCTTGATGAAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTGGTGGATCAAATCAATATTGGGAAAATAGTCAATCTTGAATATGGTTTTTTTAAACCAATAGCTAAATAAATTTTACAATATAAATTATGAAAAGTTGTCTTGTAAAGAAGAGTTTATTATTGTTTATATTTCAAATGTTGTAATTTTCTAAGGTGTGTCCTTCTTGTGTTGGTAGCAAGTATAGCATGTGTAATATTGTGTTGTTGCAACTTGTAAGAGAGTTTGTTGTTAATTTTACAATATAAATTATGAAATGTTGAATATATATAGTTCGTTTCGTTCAAA-AAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAACTCGAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E259729" ref_strand="-" ref_description="SGN-E259729 	[cLEG-42-N21]">
      <seq>attattgggttttatatattgatgatgattatcaatatgctttgattggtcagcctagtaagaaatatctttggatattatgtaggcaaccacatcttgatgaagaaatatacaaccaacttgttgagaaggcaaaagaagtaggatatgatgtgagcaaacttcacaagacacctcaagctgatcctccaccagatggtgaagatgccccaaaggacactaaaggattttggtggatcaaatcaatattgggaaaatagtcaatcttgaatatggtttttttaaaccaatagctaaataaattttacaatataaattatgaaaagttgtcttgtaaagaagagtttattattgtttatatttcaaatgttgtaattttctaaggtgtgtccttcttgtgttggtagcaagtatagcatgtgtaatattgtgttgttgcaacttgtaagagagtttgttgttaattttacaatataaattatgaaatgttgaatatatatagttcgtttcgttcaaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="52541" stop="64813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52841" g_stop="52914" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52915" i_stop="53173" i_length="259">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53174" g_stop="53620" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="520" r_length="446" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53621" i_stop="61957" i_length="8337">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61958" g_stop="61980" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="543" r_length="23" r_score="0.696"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E259729" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259729" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="52841" e_stop="52914"/>
          <exon e_start="53174" e_stop="53620"/>
          <exon e_start="61958" e_stop="61980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGGGTAAGTTCACTAAACCTTAGTTGTTGATATTTTGAAAAACAACATATGGTTGGATATGAATATTTGGGAGGAAGCTAGTTACATAATGCTTATCATAAACTTAAGTGGAGTTAAGATACAATAACAACTTATTCAATAGTCTTATAAGTAAGTTATTCAGTATAGTTTTATAACATGTTTTCCGAGGAGATTTATCTATAGATATCTTCTGCTTGATCATATTATATGTTTTTAACAAAATGTTTATTCTGGTTTATAGATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTGGTGGATCAAATCAATATTGGGAAAATAGTCAATCTTGAATATGGTTTTTTTAAACCAATAGCTAAATAAATTTTACAATATAAATTATGAAAAGTTGTCTTGTAAAGAAGAGTTTATTATTGTTTATATTTCAAATGTTGTAATTTTCTAAGGTGTGTCCTTCTTGTGTTGGTAGCAAGTATAGCATGTGTAATATTGTGTTGTTGCAACTTGTAAGAGAGTTTGTTGTTAATTTTACAATATAAATTATGAAATGTTGAATATATATAGTTCGTTTCGTTCAAATGAAGTTTCTTGAATTTTTATACAAGTGTTGTTTTATAATTAATTATTTAGTACATCTTAACTATTAATATTCTTTCCTCTTTTACTCTTCATTTCGACGATTTTCGTGTGCTATAGCACATCATTTTTTGGGTGATCCGAATTTCGACGTAAAAAATGCCAAATTTTTTTGTGGACGTCCGTCAAGACCTTGTCTATGCATATGGTTGGCCATCACGGCTTGTCCGACCCATTTGGAAGGTCAAACAAGCCCCGAAGCGAGCATACCCCTCATTTCGACGATTTTCTGTGCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATACCAAATTTTTTCGTGGACGTCCGTCAAAACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCAAAGCAGCATACGCCTCATTTCGACAATTTTCGTGTGCTATAGCACATCATTTTTTGGGTGATCCGGATTCTGACGTCAAAAATGCCAAAAAATTTTCGTGGATGTTCGTCAAAACCTTGTCTATGCATACGGTTAGCCATCACGGCTTGTCCGGACCATTTGGAGGGTCAAACGAGCCCCAAAGCGAACATACGCCTCCTTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGAACCGGATTCCGACGTCAAAAATGCAAAAAATTTTCGTGGACGTCCATCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGACCCATTTGGAGGGTCAAACGAGCCCCAAAGCAAGCATACGCCTCATTTCGATGATTTTCGTGTGCCATAGTACATTTTTTGGGTTATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTACGCTATAGCACACAATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTTTGGATGTCCGTCAATACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATCTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTTTAGCACACCATTTTTTGGGTGATCCGGATTCCGATGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTAGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGGACACCACTTTTTGGGTGATCCGGATTACGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACACCTCATTTCGATGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCAAATTTCGACATCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGATTGGCCATCACGGCTTGTCCAGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTTTAGCACACCATTTTTTGGGTGATCCGGATTCCGATGTCAAAAATGTCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTGTGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTTGACAATTTTCATGTGCTATAGCTCACCATTTTTATGGTGATCCGGATTCCGACGTCAAAAATGCAAAAAATTTTCGTGGACGTCCAACATGACCTTGTCTATGCATACGGATGGCCATCACGGCTTGTCCAGCCAATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGAGTTTCATGTGCTATAGCGCACCATTTTTTGGGTGATCTAAATTTCGACGTCAAAAATACCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCAATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCATACCATTTTTAAGGTGATCCGGATTCCGACGTCAAAAATGTCAAATTTTTTCTTGGACGTCCGTCAAGACCTTGTCTATGCATATGGTTGGACATCACGGCTTGTCCGACTCATTTGGAGGGTCAAACGAGCCCCGAAGCAAGCATACGTCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGATTATCCGGATTCCGATGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACTAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCTTGGACGTCCGTCAAGACCTTGTCTATGCATACAGTTGGCCATCACGGCTTGTCCGGCTCATTTAGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCACTTTTTGGGTGATCCGGATTCCGATGTCAAAAATGCCAAATTTTTTTGTGGACGTCCGTCACGACCTTGTCTATGCATACGGTTGGCCATCACGGCTAGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCTCATTTGGAGGGTCAAACGAGCCACAACGAGAATATACCTCTTTTCGAGAATATTTGTGTGTGCTACACCATATCATGGGTGATCCGGATTCCGACGTCAAAAATGCCATGTCTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTTTCCGGCCCATTAGGAGGGTCAGACGAGCCCCGAAGCGAGCATACGCCTTATTTCGACAATTTTTGTGTGCTATAGCACACCATTTTTTGGATGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTTGTGGACGTCCGTCAAGACCTTTCCTATGCATACGGTTGGCCATCACGGCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTAATCCGGATTCCGACGTCAAAAATGCAAAATTTGTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACCGTTGGCCATCACGGCTTGTCCAGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTACGCTATAGCACACCATTATTTAGGTGATCTAGATTTCGACGTCAAAAATGCCAAAATTTTTCGTGGACGTCCGTCAAGACCTTTTCTATGCATACGGTTGGCCATCACGGCTTGTCCGACCCATTTGGAGGGTCAAACAAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCAGATTCCGACGTCAAAAATGCCAAATTTTTTTGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGGTTGCCATCACGTCTTGTCCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCAAGCATACGCCTCATTTCGATGATTTTCGTGTGCCATAGTACATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTAGCCATCACGGCTTGTACGGCTCATTTGGAGGGTCAAACGAGCCCCGAAGAGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTGAGGTGATCCACACTCCAACGTCAAAAATGCAAAAATTTTTCGTGGACGTCCGTCAAGACCTTTTCTATGCATACGGTTGGCCATCACGGCTTGTTCGGCCCATTTGGAAGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCACTTTTTGGGTGATCCGAATTTCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCAGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACAACATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACATCCGTCAAGACCTGGTCTATGCATACGGTTGGCCATCACGGCTTGTACGACCCATTTGGAGGGTCAAACGAGCCCCGAAGAGAGCATACGCCTCACTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTGAGGTGATCCACACTTCAACGTCAAAAATGCCAAATTTTTTCGTGGACGTCTGTCAAGACCTTTTCTATGCATACAGTTGGCCATCACGGCTTGTTCGGCCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCATGTGCTATAGCACACCACTTTTTGGGTGATCCGAATTCCGACGTCAAAAATGCCAAATTTTTTCGTGAACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGTCATCCCGGCTTTTCCGACCCATTTGGAGGGTCAAACGAGCCCCGAAGCGAGCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCTGAATTCCGACGTAAAAAATGCCAATTTTTTTCGTGGACGTCCGTCAAGACCTTGTTTATGCATACGGTTGGCCATCACGGCTAGTCCGTCCCATTTGGAGGGTCAAACGAGCCCCGAAGAGAGCATACGCCTCATTTCGACGATTTTTGTGTGCTATAGCACACCATTTTTTGGGTGATCCGAATTCCGACGTAATAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATAACGGCTTGTCCGGCCCATTTGGAGGGTCAAGCAAGCCCCGAAGCAACCATACGCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTTGTGTACGTCATTTAAGACCTTATCTATGCATACGGGTTGCCATCACGGCTTGTCCTACCCATTTGGAAGGTCAAACGAGCCCTGAAGCGAGCAATCCCCTCATTTAGACGATTTTCGTGTGCTATAGCACACCATTTTATGGGTGATCCGGATTCCGACGTCAAAAATTCCAAATTTTTTCGTGGACGTCCATCAATACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTTCGACCCATTTGGAAGGTCAAACGAGCCCCGAAGCGAGCATACCCCTTATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATTCTAAATTTTTTCGTTGACATCCGTCAAGACCTTGTCTATGTGAACGGTTGGCCATCACGGCTTGTCCGAACCATTTGGAAGGTCAAACGAGCCCCGAAGCAAGTATACCCCTCATTGCGACGATTTTTGTGTGCTATAGCACACCAGTTTTTGGGTGATCCGGATTACGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAACACCTTGTCTATGCATACAGTTGGCCATCACGGCTTGTCCGACCCATTTGGAAGGTCAAACGAGCCCCGAAGCGAGCATACCCCTCATTTCAACGATTTTCATGTGCTATAGCACACCATTTTTTTGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCATCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGGTTGTTCGACCCATTTGGAATGTCAAACGAACCTCGAAGCGAGCATACCCCTCATTTCGATGATTTTCGTGTTCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGTCAAATTTTTTCGTGGAAGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGACCTATTTGGAATGTCAAACGATCCCCGAAGCGAGCATACCCCTTTTTTCGACGATTTTTGTGTGCTATAGCACACTATTTTTTGGGTGATCCGGATTCTGATGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGCCATCACGGCTTGTCCGACCCATTTGGAAGGTCAAACGAGCCCCGAAGCGAGCATACCCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCAGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGATTGGCCATCACGGCTTGTCCAACCCATTTGGAAGGTCAAACGAGCCCCGAAGCGAGCATACCCTTCGTTTCGACGATTTTCGTGTATTATAGCACATCATTTTTTGGGTGATCCGGATTCTGACATAAAAAATGCCAAATTTTTTCGTGGACGTCCGTCAAGACCTTGTCTATGCATACGGTTGGTCATCACGGCTTGTCCGATCCATTTGGAAGGTCAAACGAGCCCCGAAGCAATTATACCCCTCATTTCGACGATTTTCGTGTGCTATAGCAAACCATTTTTTGGGTTATCCGGATTCCGACGTCAAAAATGCAAAAAAAATTCGTTGACGTTCGTCAAGACCTTGTCTATGCATATGGTTGGCCATCAAGGCTTGTCCGATCCATTTGGAAGGTGAAACGAGTCCCGAAGCGAGCATACCCCTCATTTCGACGATTTTCGTGTGCTATAGCACACCATTTTTTGGGTGATCCGGATTCCGACGTCAAAAATGCCAAATTTTTTCGTGGACGTCTGTCATGACCTTGTCTATGCATACGGTTGTCCATCACGGCTTGTCCGACCCATTTGGAAGGTCAAACGATAGGAGGATGGTGACATTTCATGGAATATGTTAAAAGAGTATGTAGATAAATAGTCTGTAATAAGTTTGACATATGAAACTCACATCTAATAGTTCATATAGAAAATTCGTACAATACCATAAAACTTAAAAATTTTAAAATATATTTTTTTAGCGTATTCTTAGCTATTAACTTCCTTTTTTTTTTAATGTAAACTTTGGATTCGTTTGAACTCGTGAAGTTTCTATGGATAGAGACATTATTGGATTTGGTGTAAACTTAGTGACTAAGAATACCATGTTAGCCTCAAGTTTCCACATTGTTGTCCCTACAATTGTTTGATACAATCCGACTTTATAATATTATACCAAATATTAAGTTTCCTTTGAAATCGATCTTTCATATTATATTATGTCATCTACGATAAAATACTTAAAGAGATGACACCGGCGTACAGAGATTTGAAGGTACTTGCTACCTCTAGTAGTATAGCATACCACTATACAATTACTAATGGCTAATGTCATTAGCTAGCTTTTGAAAATAAGTTACGCTAAGGCTCACTTTTATCATGATCAGAATTAGATCCATCTCAATTTTTTGATTTACCCGATGACTCCATCCTCCAGTATGAAGGCCTGTCATGAGCATGGAGTGCAGGGGTATCAAATTTGTCTCACATTGGTTGCGGAATAGGGATTTTGGGTATTCAGTCTCAGCATACATCAAAAATTGTGTCAAATGACAGGAAGCCAAGACATCAGAAACAGGAAATATGTTATATAGTAACTACATGTAGGTGAACATCATCACATCACAACTTTCAAACAACATTATCAATCTGAGACTGACTCTTTCTCTTCATCTGAGATCATATTACAATAGAGAACAAAAAGAATTCAAGCTTA</genome_strand>
        <mrna_strand>ATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGG...................................................................................................................................................................................................................................................................ATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTGGTGGATCAAATCAATATTGGGAAAATAGTCAATCTTGAATATGGTTTTTTTAAACCAATAGCTAAATAAATTTTACAATATAAATTATGAAAAGTTGTCTTGTAAAGAAGAGTTTATTATTGTTTATATTTCAAATGTTGTAATTTTCTAAGGTGTGTCCTTCTTGTGTTGGTAGCAAGTATAGCATGTGTAATATTGTGTTGTTGCAACTTGTAAGAGAGTTTGTTGTTAATTTTACAATATAAATTATGAAATGTTGAATATATATAGTTCGTTTCGTTCAAA-AAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAACTCGAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E375088" ref_strand="-" ref_description="SGN-E375088 	[TUS-36-G19]">
      <seq>tttataacatgttttccgaggagatttagctataaaaattttctgcttgatcatattatatgtttttaacaaaatgtttattttggtttataaatattatgtaggcaacccccttttgatgaagaaatatacaaccaacttgttgaaaaggcaaaaaaagtaggatatgatgtgagcaaacttcccaaaaccccccaagctgatcctcccccaaatggtgaaaatgccccaaaggaccctaaaggattttggtggatcaaatcaatattgggaaaatagtcaattttgaatatggtttttttaaaccaaaagctaaataaattttccaatataaattatgaaaagttgttttgtaaaaaaaagtttattattgtttatatttcaaatgttgtaattttttaaggggggtcctttttgtgttggtaacaagtatagcatgtgtaatattgggttgttgcaacttgtaaaaaagtttgttgttaattttcccatataaattatgaaatgttggatattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="52781" stop="53900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53081" g_stop="53595" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="517" polyA_stop="562"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E375088" ref_strand="-">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375088" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53081" e_stop="53595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAACATGTTTTCCGAGGAGATTTATCTATAGATATCTTCTGCTTGATCATATTATATGTTTTTAACAAAATGTTTATTCTGGTTTATAGATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTGGTGGATCAAATCAATATTGGGAAAATAGTCAATCTTGAATATGGTTTTTTTAAACCAATAGCTAAATAAATTTTACAATATAAATTATGAAAAGTTGTCTTGTAAAGAAGAGTTTATTATTGTTTATATTTCAAATGTTGTAATTTTCTAAGGTGTGTCCTTCTTGTGTTGGTAGCAAGTATAGCATGTGTAATATTGTGTTGTTGCAACTTGTAAGAGAGTTTGTTGTTAATTTTACAATATAAATTATGAAATGTTGAATAT</genome_strand>
        <mrna_strand>TTTATAACATGTTTTCCGAGGAGATTTAGCTATAAAAATTTTCTGCTTGATCATATTATATGTTTTTAACAAAATGTTTATTTTGGTTTATAAATATTATGTAGGCAACCCCCTTTTGATGAAGAAATATACAACCAACTTGTTGAAAAGGCAAAAAAAGTAGGATATGATGTGAGCAAACTTCCCAAAACCCCCCAAGCTGATCCTCCCCCAAATGGTGAAAATGCCCCAAAGGACCCTAAAGGATTTTGGTGGATCAAATCAATATTGGGAAAATAGTCAATTTTGAATATGGTTTTTTTAAACCAAAAGCTAAATAAATTTTCCAATATAAATTATGAAAAGTTGTTTTGTAAAAAAAAGTTTATTATTGTTTATATTTCAAATGTTGTAATTTTTTAAGGGGGGTCCTTTTTGTGTTGGTAACAAGTATAGCATGTGTAATATTGGGTTGTTGCAACTTGTAAAAAAGTTTGTTGTTAATTTTCCCATATAAATTATGAAATGTTGGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E262094" ref_strand="+" ref_description="SGN-E262094 	[cLEG-58-K7]">
      <seq>tcggatcctgtgatcttagcaaacgcttctgatgttaaccattttgggtattttcagagatccagcgttaaggaatttatcgtttttgtgggtcgaactgttgctaaaaggaacccacctggacaacgacaatctgttcagcatgaagaatacaaggtgcattcatacaatcgaaatggtttatgtgctttgggcttcatggatgatcactatccagttcgaagtgcattttcactgctcaaccaggttttggatgagtatctgaagaattttggtgagtcatggaagacggctcaatgcgacaatgctcaaccatggccttatctgaatgaagctctagccaaatttcaggatcctgctgaggccgataagctgttcaaaattcaacgagagttggatgaaacaaaaattattctccataagacaattgacagtgtcttagaacgtggtgagaagctagacagtttggttgagaagagttcagatctcagtgctgcttcacagatgttctacaagcaggcaaagaaaaccaattcatgctgtacaattttatagactgttttctgaagatggaagggggcgattcaaccacggataaacttgtgtctatgttgcatatgaagtatcnggagaattgtttgtttatatcatccatgatattctataagcttgaattctttttgttctctattgtaatatgatctcagatgaagagaaagagtcagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="65821" stop="61616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65521" g_stop="65374" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65373" i_stop="64480" i_length="894">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64479" g_stop="64382" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="246" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64381" i_stop="64290" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64289" g_stop="64185" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="351" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64184" i_stop="64070" i_length="115">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64069" g_stop="64004" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="417" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64003" i_stop="63032" i_length="972">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63031" g_stop="62945" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="504" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62944" i_stop="62140" i_length="805">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62139" g_stop="61916" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="729" r_length="225" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E262094" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65521" e_stop="65374"/>
          <exon e_start="64479" e_stop="64382"/>
          <exon e_start="64289" e_stop="64185"/>
          <exon e_start="64069" e_stop="64004"/>
          <exon e_start="63031" e_stop="62945"/>
          <exon e_start="62139" e_stop="61916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGATCCTGTGATCTTAGCAAACGCTTCTGATGTTAACCATTTTGGGTATTTTCAGAGATCCAGCGTTAAGGAATTTATCGTTTTTGTGGGTCGAACTGTTGCTAAAAGGAACCCACCTGGACAACGACAATCTGTTCAGCATGAAGGTTTGATTTTTCCAACACCCTTTTGGTTGATTTGGTTATGGGGTTGTCTTATCTTGGTTTTGGGGAATCAAATATGTTGTTTGGTTTTGGTGGAATTGTAGATGTCTTGTGGATTGATGATTTTTTTGTTTTTTATTGGATGTTTGGATTTGTGATATTAGGTAGGTTGCAGCTCAATTTGCTGTTTCTATTGGTAAAGTGTATAGATGGATGAGTAATGTTGCAAAGTTAGACAAAAAAAGTAGGATTTCTTCCCATCTGTTTTAGCTTTGTAGATAATTGAATATAGTTAGCTGGTACCTATGGCTGGAGGGAGGTGGCAGGTACCTGTATTCAAGGTGCGTGCAAGTGAGCATAGACACCGATCGTTATGAAAAAAGATGCAAGCTTGTGGTCCTATAGGTGCTCCTGATGCTTTGAGTCTTGCATTTTGTGATTTTCTGTTTTCATTTCTCTTTTTCTTTTTTTTGTGTTTTGGGGATGGTTTTGCACAAAAGTTTATCAATAACCTCAAGGTACATGTTACCCTACCCAGAAGCCACTTTTTTGAACTACACGGGGTATGTTGTCCTTGTACAAAAGTAGAAGGATGAATGAAGTGTTGACTAGCTTGGTTGGGAAAATTGTTATGTTTAACGAATTGATCTTTTTCAGTTATATTTCTTGAAGTCTTCACATGCTTACACAAGTAATGTTAATCGGTGTTCTTGATATATATCAACTAGTGTAGGATATAAAAATTTGGTGGATTGGTTCTCAATCACAGCCTCTAGCACAAAGTAGTGATTTTTAAGTCGTATTTGATCTATATACCGACCCAATGGTATACTCCTCGATTGTGTTTTGGTCACACATACACCAGTTTTGACTTTTTTTTTTTTTTTTTTACCTTAGAATACAAGGTGCATTCATACAATCGAAATGGTTTATGTGCTTTGGGCTTCATGGATGATCACTATCCAGTTCGAAGTGCATTTTCACTGCTCAACCAGGTATAGGCTCTTTATTATAGATATTCATCTTTGAGAGGAGAAACTCTATATATGGAGAAATCAAATTATGGATCTGCATCTCATTTTTCCAGGTTTTGGATGAGTATCTGAAGAATTTTGGTGAGTCATGGAAGACGGCTCAATGCGACAATGCTCAACCATGGCCTTATCTGAATGAAGCTCTAGCCAAATTTCAGGTTCCCCTTCTGTTTTTGTTTTCTGGGTGATGATGGAATTTCATTTTCAATCAAATTCTTCCCACTTTCATCTTAAAACAATTGACGTTTGAGCTGATCATGTTGACCCCTACAGGATCCTGCTGAGGCCGATAAGCTGTTCAAAATTCAACGAGAGTTGGATGAAACAAAAATTATTCTCGTAAGTATTGTGTTATTCTCATGATTGCCTGCTTAATGTCATCTTTTTAAGCTCTTTATTCCAAGATGATTGGGAGCAGTTTGCATTTGGATAATGTTTGTTGATCATTGAGTGAGTTCCAGAAGACCTGGACAGAATACAAATTCTCCATTTTTTTGGTTAATGATCTATATCCCCTGATGGTTATATATGGACATGTAACTCCTAGCCACTGCCAGCCATTTTCCTGTAGAGCTTCTGCTCGTGCATTGAATTACCGATGAAATTACTAATTAATTTTGTATTGCTTTTACAAGTTGAAATCATTTGTATGCTGGAGTCTACCACATTGGTTTGAGGGAATAGGTTATATATATGTGTGTGTGTCTGTGTGGTATGGGGTGCGGGGTATCCCACACATAAGCTAACTCTTTGAGATGGTGTTAGGCCCAAGGTCTGTTTTCTAGAATTTGACAAGTATGTTGCCACTTTTTGGTGGATGTGTATCTACCTTCATTATTTGATGTCTAGTTAAGTTTATTTTTGAGTTCCTAATATATTTGTTACGTTATCCAAGTAGTTTAACGGTCATATGCTTTCATTGATAAGCTTTCCAAGTTATTTACACTTTGTCCCTCACTCCCTCTTGTAGGCCATGGTTATTTCTTTGAGTAGTACCTCGTTTGACCTTCCTGGTGCATTTTAAGCAAACTATTCTTACGTGGACATCCTAAAGCTTTAAAATCAAATGCCCGTGTTGAAAACATGCTGTTGGGTGGGAATAGGAAAGCAAATATATTCTTACATTGCGTTACTTAAATGTGTTTTTAGAAGTAACTTCTCTTTTTAGTTGTGTTTATTTGTATTTCCTTTCTAAATATGCACTGTACTTATCAAATATTCATGCATATTAATGCATGAAGGAGTTCTGGTCCTCTTTTTTTGGTTGCTGTTAGCTGTGCTGATATTGGTTTCTCTTACCTTTTGACACAGCATAAGACAATTGACAGTGTCTTAGAACGTGGTGAGAAGCTAGACAGTTTGGTTGAGAAGAGTTCAGATCTCAGTGCTGCTTCACAGGTAATGCATCTGTTAAGAGGATTATAATCTTGAAAAGAAGATGAACGCTGTTTAACAATGAACAGTTCTTCATCTTTCCTCTTAGGTGGAATATTTTTCCTCTACTATTTTTATCAATTTATTTTGACAATTCAGATTATGTCTACTGTTGTGTGGATAATACTCGGATCTTTCAACAATGTTATTGCTATGGCTCACTAACTAAAAAGATCCAAGTGGTTTTTTTACGCTCAGTATCAAGTTGCACGGGGAGGTTATTTGCAATTTCTTTGTGGGAAGTATTTTACAAGTCACATTTTCTCTACAAGCATGGTGGACATGGCATGATAGGTGCAGGCGCATGCCATGGAACCATTAATTGAATAATATGGACATACAGAACTGAGCAACAAGTTTTGTAGTATTATCACACTAAATACACACATCTTCCTGCTAAGTGAACTCGTGTCAAAGAACACTGTCGAATATTGTTCTGCATTATATGTCCATTGGGTTTTGGGAGTTCTTTAGTTGAATTAAAAGACACTTCATGCTAAATTTTCTACTTGTGGAGGGAGAGGAACAAATGAAGCTTCTTGGTGGCTGGGAAAGTAAACATCTGATATAAGCTGTGTTCTATTATGCATGAACTGTATTTCGCTGGATCCCTTTGTGGTATAACCATGGATGTGATGATGTTAGTCTTTTATTACTATTTCTTCTGCTAATTTTAATATTGTAGAAGCTGCTGACTCTTAAACATTATCTGTGAGCCTCTACTAGTTTCGGCTTTTTTCCTGACATGACCTGTTTGATTTCTAAACAGATGTTCTACAAGCAGGCAAAGAAAACCAATTCATGCTGTACAATTTTATAGACTGTTTTCTGAAGATGGAAGGGGGCGATTCAACCACGGATAAACTTGTGTCTATGTTGCATATGAAGTATC-GGAGAATTGTTTGTTTATATCATCCATGATATTCTATAAGCTTGAATTCTTTTTGTTCTCTATTGTAATATGATCTCAGATGAAGAGAAAGAGTCAGTCTC</genome_strand>
        <mrna_strand>TCGGATCCTGTGATCTTAGCAAACGCTTCTGATGTTAACCATTTTGGGTATTTTCAGAGATCCAGCGTTAAGGAATTTATCGTTTTTGTGGGTCGAACTGTTGCTAAAAGGAACCCACCTGGACAACGACAATCTGTTCAGCATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAAGGTGCATTCATACAATCGAAATGGTTTATGTGCTTTGGGCTTCATGGATGATCACTATCCAGTTCGAAGTGCATTTTCACTGCTCAACCAG............................................................................................GTTTTGGATGAGTATCTGAAGAATTTTGGTGAGTCATGGAAGACGGCTCAATGCGACAATGCTCAACCATGGCCTTATCTGAATGAAGCTCTAGCCAAATTTCAG...................................................................................................................GATCCTGCTGAGGCCGATAAGCTGTTCAAAATTCAACGAGAGTTGGATGAAACAAAAATTATTCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAAGACAATTGACAGTGTCTTAGAACGTGGTGAGAAGCTAGACAGTTTGGTTGAGAAGAGTTCAGATCTCAGTGCTGCTTCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCTACAAGCAGGCAAAGAAAACCAATTCATGCTGTACAATTTTATAGACTGTTTTCTGAAGATGGAAGGGGGCGATTCAACCACGGATAAACTTGTGTCTATGTTGCATATGAAGTATCNGGAGAATTGTTTGTTTATATCATCCATGATATTCTATAAGCTTGAATTCTTTTTGTTCTCTATTGTAATATGATCTCAGATGAAGAGAAAGAGTCAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E376976" ref_strand="+" ref_description="SGN-E376976 	[TUS-20-O3]">
      <seq>gaagatcacagctttgatggtgttgaaatgcaatccagaaggttcggatcctgtgatcttagcaaacgcttctgatgttaaccattttgggtattttcagagatccagcgttaaggaatttatcgtttttgtgggtcgaactgttgctaaaaggaacccacctggacaacgacaatctgttcagcatgaagaatacaaggtgcattcatacaatcgaaatggtttatgtgctttgggcttcatggatgatcactatccagttcgaagtgcattttcactgctcaaccaggttttggatgagtatctgaagaattttggtgagtcatggaagacggctcaatgcgacaatgctcaaccatggccttatctgaatgaagctctagccaaatttcaggatcctgctgaggccgataagctgttcaaaattcaacgagagttggatgaaacaaaaattattctccataagacaattgacagtgtcttagaacgtggtgagaagctagacagtttggttgagaagagttcagatctcagtgctgcttcacagatgttctacaagcaggcaaagaaaaccaattcatgctgtacaattttatagactgttttctgaagatggaagggggcgattcaaccacggataaacttgtgtctatgttgcatatgaagtatcggagaattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="65864" stop="61707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65564" g_stop="65374" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65373" i_stop="64480" i_length="894">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64479" g_stop="64382" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="289" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64381" i_stop="64290" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64289" g_stop="64185" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="394" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64184" i_stop="64070" i_length="115">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64069" g_stop="64004" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="460" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64003" i_stop="63032" i_length="972">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63031" g_stop="62945" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="547" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62944" i_stop="62140" i_length="805">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62139" g_stop="62007" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="680" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E376976" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65564" e_stop="65374"/>
          <exon e_start="64479" e_stop="64382"/>
          <exon e_start="64289" e_stop="64185"/>
          <exon e_start="64069" e_stop="64004"/>
          <exon e_start="63031" e_stop="62945"/>
          <exon e_start="62139" e_stop="62007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATCACAGCTTTGATGGTGTTGAAATGCAATCCAGAAGGTTCGGATCCTGTGATCTTAGCAAACGCTTCTGATGTTAACCATTTTGGGTATTTTCAGAGATCCAGCGTTAAGGAATTTATCGTTTTTGTGGGTCGAACTGTTGCTAAAAGGAACCCACCTGGACAACGACAATCTGTTCAGCATGAAGGTTTGATTTTTCCAACACCCTTTTGGTTGATTTGGTTATGGGGTTGTCTTATCTTGGTTTTGGGGAATCAAATATGTTGTTTGGTTTTGGTGGAATTGTAGATGTCTTGTGGATTGATGATTTTTTTGTTTTTTATTGGATGTTTGGATTTGTGATATTAGGTAGGTTGCAGCTCAATTTGCTGTTTCTATTGGTAAAGTGTATAGATGGATGAGTAATGTTGCAAAGTTAGACAAAAAAAGTAGGATTTCTTCCCATCTGTTTTAGCTTTGTAGATAATTGAATATAGTTAGCTGGTACCTATGGCTGGAGGGAGGTGGCAGGTACCTGTATTCAAGGTGCGTGCAAGTGAGCATAGACACCGATCGTTATGAAAAAAGATGCAAGCTTGTGGTCCTATAGGTGCTCCTGATGCTTTGAGTCTTGCATTTTGTGATTTTCTGTTTTCATTTCTCTTTTTCTTTTTTTTGTGTTTTGGGGATGGTTTTGCACAAAAGTTTATCAATAACCTCAAGGTACATGTTACCCTACCCAGAAGCCACTTTTTTGAACTACACGGGGTATGTTGTCCTTGTACAAAAGTAGAAGGATGAATGAAGTGTTGACTAGCTTGGTTGGGAAAATTGTTATGTTTAACGAATTGATCTTTTTCAGTTATATTTCTTGAAGTCTTCACATGCTTACACAAGTAATGTTAATCGGTGTTCTTGATATATATCAACTAGTGTAGGATATAAAAATTTGGTGGATTGGTTCTCAATCACAGCCTCTAGCACAAAGTAGTGATTTTTAAGTCGTATTTGATCTATATACCGACCCAATGGTATACTCCTCGATTGTGTTTTGGTCACACATACACCAGTTTTGACTTTTTTTTTTTTTTTTTTACCTTAGAATACAAGGTGCATTCATACAATCGAAATGGTTTATGTGCTTTGGGCTTCATGGATGATCACTATCCAGTTCGAAGTGCATTTTCACTGCTCAACCAGGTATAGGCTCTTTATTATAGATATTCATCTTTGAGAGGAGAAACTCTATATATGGAGAAATCAAATTATGGATCTGCATCTCATTTTTCCAGGTTTTGGATGAGTATCTGAAGAATTTTGGTGAGTCATGGAAGACGGCTCAATGCGACAATGCTCAACCATGGCCTTATCTGAATGAAGCTCTAGCCAAATTTCAGGTTCCCCTTCTGTTTTTGTTTTCTGGGTGATGATGGAATTTCATTTTCAATCAAATTCTTCCCACTTTCATCTTAAAACAATTGACGTTTGAGCTGATCATGTTGACCCCTACAGGATCCTGCTGAGGCCGATAAGCTGTTCAAAATTCAACGAGAGTTGGATGAAACAAAAATTATTCTCGTAAGTATTGTGTTATTCTCATGATTGCCTGCTTAATGTCATCTTTTTAAGCTCTTTATTCCAAGATGATTGGGAGCAGTTTGCATTTGGATAATGTTTGTTGATCATTGAGTGAGTTCCAGAAGACCTGGACAGAATACAAATTCTCCATTTTTTTGGTTAATGATCTATATCCCCTGATGGTTATATATGGACATGTAACTCCTAGCCACTGCCAGCCATTTTCCTGTAGAGCTTCTGCTCGTGCATTGAATTACCGATGAAATTACTAATTAATTTTGTATTGCTTTTACAAGTTGAAATCATTTGTATGCTGGAGTCTACCACATTGGTTTGAGGGAATAGGTTATATATATGTGTGTGTGTCTGTGTGGTATGGGGTGCGGGGTATCCCACACATAAGCTAACTCTTTGAGATGGTGTTAGGCCCAAGGTCTGTTTTCTAGAATTTGACAAGTATGTTGCCACTTTTTGGTGGATGTGTATCTACCTTCATTATTTGATGTCTAGTTAAGTTTATTTTTGAGTTCCTAATATATTTGTTACGTTATCCAAGTAGTTTAACGGTCATATGCTTTCATTGATAAGCTTTCCAAGTTATTTACACTTTGTCCCTCACTCCCTCTTGTAGGCCATGGTTATTTCTTTGAGTAGTACCTCGTTTGACCTTCCTGGTGCATTTTAAGCAAACTATTCTTACGTGGACATCCTAAAGCTTTAAAATCAAATGCCCGTGTTGAAAACATGCTGTTGGGTGGGAATAGGAAAGCAAATATATTCTTACATTGCGTTACTTAAATGTGTTTTTAGAAGTAACTTCTCTTTTTAGTTGTGTTTATTTGTATTTCCTTTCTAAATATGCACTGTACTTATCAAATATTCATGCATATTAATGCATGAAGGAGTTCTGGTCCTCTTTTTTTGGTTGCTGTTAGCTGTGCTGATATTGGTTTCTCTTACCTTTTGACACAGCATAAGACAATTGACAGTGTCTTAGAACGTGGTGAGAAGCTAGACAGTTTGGTTGAGAAGAGTTCAGATCTCAGTGCTGCTTCACAGGTAATGCATCTGTTAAGAGGATTATAATCTTGAAAAGAAGATGAACGCTGTTTAACAATGAACAGTTCTTCATCTTTCCTCTTAGGTGGAATATTTTTCCTCTACTATTTTTATCAATTTATTTTGACAATTCAGATTATGTCTACTGTTGTGTGGATAATACTCGGATCTTTCAACAATGTTATTGCTATGGCTCACTAACTAAAAAGATCCAAGTGGTTTTTTTACGCTCAGTATCAAGTTGCACGGGGAGGTTATTTGCAATTTCTTTGTGGGAAGTATTTTACAAGTCACATTTTCTCTACAAGCATGGTGGACATGGCATGATAGGTGCAGGCGCATGCCATGGAACCATTAATTGAATAATATGGACATACAGAACTGAGCAACAAGTTTTGTAGTATTATCACACTAAATACACACATCTTCCTGCTAAGTGAACTCGTGTCAAAGAACACTGTCGAATATTGTTCTGCATTATATGTCCATTGGGTTTTGGGAGTTCTTTAGTTGAATTAAAAGACACTTCATGCTAAATTTTCTACTTGTGGAGGGAGAGGAACAAATGAAGCTTCTTGGTGGCTGGGAAAGTAAACATCTGATATAAGCTGTGTTCTATTATGCATGAACTGTATTTCGCTGGATCCCTTTGTGGTATAACCATGGATGTGATGATGTTAGTCTTTTATTACTATTTCTTCTGCTAATTTTAATATTGTAGAAGCTGCTGACTCTTAAACATTATCTGTGAGCCTCTACTAGTTTCGGCTTTTTTCCTGACATGACCTGTTTGATTTCTAAACAGATGTTCTACAAGCAGGCAAAGAAAACCAATTCATGCTGTACAATTTTATAGACTGTTTTCTGAAGATGGAAGGGGGCGATTCAACCACGGATAAACTTGTGTCTATGTTGCATATGAAGTATCGGAGAATTGT</genome_strand>
        <mrna_strand>GAAGATCACAGCTTTGATGGTGTTGAAATGCAATCCAGAAGGTTCGGATCCTGTGATCTTAGCAAACGCTTCTGATGTTAACCATTTTGGGTATTTTCAGAGATCCAGCGTTAAGGAATTTATCGTTTTTGTGGGTCGAACTGTTGCTAAAAGGAACCCACCTGGACAACGACAATCTGTTCAGCATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAAGGTGCATTCATACAATCGAAATGGTTTATGTGCTTTGGGCTTCATGGATGATCACTATCCAGTTCGAAGTGCATTTTCACTGCTCAACCAG............................................................................................GTTTTGGATGAGTATCTGAAGAATTTTGGTGAGTCATGGAAGACGGCTCAATGCGACAATGCTCAACCATGGCCTTATCTGAATGAAGCTCTAGCCAAATTTCAG...................................................................................................................GATCCTGCTGAGGCCGATAAGCTGTTCAAAATTCAACGAGAGTTGGATGAAACAAAAATTATTCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAAGACAATTGACAGTGTCTTAGAACGTGGTGAGAAGCTAGACAGTTTGGTTGAGAAGAGTTCAGATCTCAGTGCTGCTTCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCTACAAGCAGGCAAAGAAAACCAATTCATGCTGTACAATTTTATAGACTGTTTTCTGAAGATGGAAGGGGGCGATTCAACCACGGATAAACTTGTGTCTATGTTGCATATGAAGTATCGGAGAATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E228133" ref_strand="+" ref_description="SGN-E228133 	[cLED-2-J10]">
      <seq>acctggacaacgacaatctgttcagcatgaagaatacaaggtgcattcatacaatcgaaatggtttatgtgctttgggcttcatggatgatcactatccagttcgaagtgcattttcactgctcaaccaggttttggatgagtatctgaagaattttggtgagtcatggaagacggctcaatgcgacaatgctcaaccatggccttatctgaatgaagctctagccaaatttcaggatcctgctgaggccgataagctgttcaaaattcaacgagagttggatgaaacaaaaattattctccataagacaattgacagtgtcttagaacgtggtgagaagctagacagtttggttgagaagagttcagatctcagtgctgcttcacagatgttctacaagcaggcaaagaaaaccaattcatgctgtacaattttatagactgttttctgaagatggaagggggcgattcaaccacggataaacttgtgtctatgttgcatatgaagtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="65705" stop="61717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65405" g_stop="65374" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65373" i_stop="64480" i_length="894">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64479" g_stop="64382" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="130" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64381" i_stop="64290" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64289" g_stop="64185" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="235" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64184" i_stop="64070" i_length="115">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64069" g_stop="64004" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="301" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64003" i_stop="63032" i_length="972">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63031" g_stop="62945" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="388" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62944" i_stop="62140" i_length="805">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62139" g_stop="62017" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="511" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E228133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65405" e_stop="65374"/>
          <exon e_start="64479" e_stop="64382"/>
          <exon e_start="64289" e_stop="64185"/>
          <exon e_start="64069" e_stop="64004"/>
          <exon e_start="63031" e_stop="62945"/>
          <exon e_start="62139" e_stop="62017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTGGACAACGACAATCTGTTCAGCATGAAGGTTTGATTTTTCCAACACCCTTTTGGTTGATTTGGTTATGGGGTTGTCTTATCTTGGTTTTGGGGAATCAAATATGTTGTTTGGTTTTGGTGGAATTGTAGATGTCTTGTGGATTGATGATTTTTTTGTTTTTTATTGGATGTTTGGATTTGTGATATTAGGTAGGTTGCAGCTCAATTTGCTGTTTCTATTGGTAAAGTGTATAGATGGATGAGTAATGTTGCAAAGTTAGACAAAAAAAGTAGGATTTCTTCCCATCTGTTTTAGCTTTGTAGATAATTGAATATAGTTAGCTGGTACCTATGGCTGGAGGGAGGTGGCAGGTACCTGTATTCAAGGTGCGTGCAAGTGAGCATAGACACCGATCGTTATGAAAAAAGATGCAAGCTTGTGGTCCTATAGGTGCTCCTGATGCTTTGAGTCTTGCATTTTGTGATTTTCTGTTTTCATTTCTCTTTTTCTTTTTTTTGTGTTTTGGGGATGGTTTTGCACAAAAGTTTATCAATAACCTCAAGGTACATGTTACCCTACCCAGAAGCCACTTTTTTGAACTACACGGGGTATGTTGTCCTTGTACAAAAGTAGAAGGATGAATGAAGTGTTGACTAGCTTGGTTGGGAAAATTGTTATGTTTAACGAATTGATCTTTTTCAGTTATATTTCTTGAAGTCTTCACATGCTTACACAAGTAATGTTAATCGGTGTTCTTGATATATATCAACTAGTGTAGGATATAAAAATTTGGTGGATTGGTTCTCAATCACAGCCTCTAGCACAAAGTAGTGATTTTTAAGTCGTATTTGATCTATATACCGACCCAATGGTATACTCCTCGATTGTGTTTTGGTCACACATACACCAGTTTTGACTTTTTTTTTTTTTTTTTTACCTTAGAATACAAGGTGCATTCATACAATCGAAATGGTTTATGTGCTTTGGGCTTCATGGATGATCACTATCCAGTTCGAAGTGCATTTTCACTGCTCAACCAGGTATAGGCTCTTTATTATAGATATTCATCTTTGAGAGGAGAAACTCTATATATGGAGAAATCAAATTATGGATCTGCATCTCATTTTTCCAGGTTTTGGATGAGTATCTGAAGAATTTTGGTGAGTCATGGAAGACGGCTCAATGCGACAATGCTCAACCATGGCCTTATCTGAATGAAGCTCTAGCCAAATTTCAGGTTCCCCTTCTGTTTTTGTTTTCTGGGTGATGATGGAATTTCATTTTCAATCAAATTCTTCCCACTTTCATCTTAAAACAATTGACGTTTGAGCTGATCATGTTGACCCCTACAGGATCCTGCTGAGGCCGATAAGCTGTTCAAAATTCAACGAGAGTTGGATGAAACAAAAATTATTCTCGTAAGTATTGTGTTATTCTCATGATTGCCTGCTTAATGTCATCTTTTTAAGCTCTTTATTCCAAGATGATTGGGAGCAGTTTGCATTTGGATAATGTTTGTTGATCATTGAGTGAGTTCCAGAAGACCTGGACAGAATACAAATTCTCCATTTTTTTGGTTAATGATCTATATCCCCTGATGGTTATATATGGACATGTAACTCCTAGCCACTGCCAGCCATTTTCCTGTAGAGCTTCTGCTCGTGCATTGAATTACCGATGAAATTACTAATTAATTTTGTATTGCTTTTACAAGTTGAAATCATTTGTATGCTGGAGTCTACCACATTGGTTTGAGGGAATAGGTTATATATATGTGTGTGTGTCTGTGTGGTATGGGGTGCGGGGTATCCCACACATAAGCTAACTCTTTGAGATGGTGTTAGGCCCAAGGTCTGTTTTCTAGAATTTGACAAGTATGTTGCCACTTTTTGGTGGATGTGTATCTACCTTCATTATTTGATGTCTAGTTAAGTTTATTTTTGAGTTCCTAATATATTTGTTACGTTATCCAAGTAGTTTAACGGTCATATGCTTTCATTGATAAGCTTTCCAAGTTATTTACACTTTGTCCCTCACTCCCTCTTGTAGGCCATGGTTATTTCTTTGAGTAGTACCTCGTTTGACCTTCCTGGTGCATTTTAAGCAAACTATTCTTACGTGGACATCCTAAAGCTTTAAAATCAAATGCCCGTGTTGAAAACATGCTGTTGGGTGGGAATAGGAAAGCAAATATATTCTTACATTGCGTTACTTAAATGTGTTTTTAGAAGTAACTTCTCTTTTTAGTTGTGTTTATTTGTATTTCCTTTCTAAATATGCACTGTACTTATCAAATATTCATGCATATTAATGCATGAAGGAGTTCTGGTCCTCTTTTTTTGGTTGCTGTTAGCTGTGCTGATATTGGTTTCTCTTACCTTTTGACACAGCATAAGACAATTGACAGTGTCTTAGAACGTGGTGAGAAGCTAGACAGTTTGGTTGAGAAGAGTTCAGATCTCAGTGCTGCTTCACAGGTAATGCATCTGTTAAGAGGATTATAATCTTGAAAAGAAGATGAACGCTGTTTAACAATGAACAGTTCTTCATCTTTCCTCTTAGGTGGAATATTTTTCCTCTACTATTTTTATCAATTTATTTTGACAATTCAGATTATGTCTACTGTTGTGTGGATAATACTCGGATCTTTCAACAATGTTATTGCTATGGCTCACTAACTAAAAAGATCCAAGTGGTTTTTTTACGCTCAGTATCAAGTTGCACGGGGAGGTTATTTGCAATTTCTTTGTGGGAAGTATTTTACAAGTCACATTTTCTCTACAAGCATGGTGGACATGGCATGATAGGTGCAGGCGCATGCCATGGAACCATTAATTGAATAATATGGACATACAGAACTGAGCAACAAGTTTTGTAGTATTATCACACTAAATACACACATCTTCCTGCTAAGTGAACTCGTGTCAAAGAACACTGTCGAATATTGTTCTGCATTATATGTCCATTGGGTTTTGGGAGTTCTTTAGTTGAATTAAAAGACACTTCATGCTAAATTTTCTACTTGTGGAGGGAGAGGAACAAATGAAGCTTCTTGGTGGCTGGGAAAGTAAACATCTGATATAAGCTGTGTTCTATTATGCATGAACTGTATTTCGCTGGATCCCTTTGTGGTATAACCATGGATGTGATGATGTTAGTCTTTTATTACTATTTCTTCTGCTAATTTTAATATTGTAGAAGCTGCTGACTCTTAAACATTATCTGTGAGCCTCTACTAGTTTCGGCTTTTTTCCTGACATGACCTGTTTGATTTCTAAACAGATGTTCTACAAGCAGGCAAAGAAAACCAATTCATGCTGTACAATTTTATAGACTGTTTTCTGAAGATGGAAGGGGGCGATTCAACCACGGATAAACTTGTGTCTATGTTGCATATGAAGTATC</genome_strand>
        <mrna_strand>ACCTGGACAACGACAATCTGTTCAGCATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAAGGTGCATTCATACAATCGAAATGGTTTATGTGCTTTGGGCTTCATGGATGATCACTATCCAGTTCGAAGTGCATTTTCACTGCTCAACCAG............................................................................................GTTTTGGATGAGTATCTGAAGAATTTTGGTGAGTCATGGAAGACGGCTCAATGCGACAATGCTCAACCATGGCCTTATCTGAATGAAGCTCTAGCCAAATTTCAG...................................................................................................................GATCCTGCTGAGGCCGATAAGCTGTTCAAAATTCAACGAGAGTTGGATGAAACAAAAATTATTCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAAGACAATTGACAGTGTCTTAGAACGTGGTGAGAAGCTAGACAGTTTGGTTGAGAAGAGTTCAGATCTCAGTGCTGCTTCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCTACAAGCAGGCAAAGAAAACCAATTCATGCTGTACAATTTTATAGACTGTTTTCTGAAGATGGAAGGGGGCGATTCAACCACGGATAAACTTGTGTCTATGTTGCATATGAAGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E339827" ref_strand="+" ref_description="SGN-E339827 	[cTOF-3-C23]">
      <seq>agttctattccttcgaaggcggccatagaagagaggaaaaaaaaaattctttgaaatttattttggtgtttttggataattttttgaagaagtttgagaggtttagagagaaaaacagagatgaagatcacagctttgatggtgttgaaatgcaatccagaaggttcggatcctgtgatcttagcaaacgcttctgatgttaaccattttgggtattttcagagatccagcgttaaggaatttatcgtttttgtgggtcgaactgttgctaaaaggaacccacctggacaacgacaatctgttcagcatgaagaatacaaggtgcattcatacaatcgaaatggtttatgtgctttgggcttcatggatgatcactatccagttcgaagtgcattttcactgctcaaccaggttttggatgagtatctgaagaattttggtgagtcatggaagacggctcaatgcgacaatgctcaaccatggccttatctgaatgaagctctagccaaatttcaggatcctgctgaggccgataagctgttcaaaattcaacgagagttggatgaaacaaaaattattctccataagacaattgacagtgtcttacaacgtggtgagaagctagacagtttggttgagaagagttcacatctcagtgctgcttcacagatgttctacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="65985" stop="61828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65685" g_stop="65374" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65373" i_stop="64480" i_length="894">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64479" g_stop="64382" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="411" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64381" i_stop="64290" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64289" g_stop="64185" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="516" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64184" i_stop="64070" i_length="115">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64069" g_stop="64004" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="582" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64003" i_stop="63032" i_length="972">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63031" g_stop="62945" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="669" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62944" i_stop="62140" i_length="805">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62139" g_stop="62128" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="681" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E339827" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65685" e_stop="65374"/>
          <exon e_start="64479" e_stop="64382"/>
          <exon e_start="64289" e_stop="64185"/>
          <exon e_start="64069" e_stop="64004"/>
          <exon e_start="63031" e_stop="62945"/>
          <exon e_start="62139" e_stop="62128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCTATTCCTTCGAAGGCGGCCATAGAAGAGAGG-AAAAAAAAATTCTTTGAAATTTATTTTGGTGTTTTTGGATAATTTTTTGAAGAAGTTTGAGAGGTTTAGAGAGAAAAACAGAGATGAAGATCACAGCTTTGATGGTGTTGAAATGCAATCCAGAAGGTTCGGATCCTGTGATCTTAGCAAACGCTTCTGATGTTAACCATTTTGGGTATTTTCAGAGATCCAGCGTTAAGGAATTTATCGTTTTTGTGGGTCGAACTGTTGCTAAAAGGAACCCACCTGGACAACGACAATCTGTTCAGCATGAAGGTTTGATTTTTCCAACACCCTTTTGGTTGATTTGGTTATGGGGTTGTCTTATCTTGGTTTTGGGGAATCAAATATGTTGTTTGGTTTTGGTGGAATTGTAGATGTCTTGTGGATTGATGATTTTTTTGTTTTTTATTGGATGTTTGGATTTGTGATATTAGGTAGGTTGCAGCTCAATTTGCTGTTTCTATTGGTAAAGTGTATAGATGGATGAGTAATGTTGCAAAGTTAGACAAAAAAAGTAGGATTTCTTCCCATCTGTTTTAGCTTTGTAGATAATTGAATATAGTTAGCTGGTACCTATGGCTGGAGGGAGGTGGCAGGTACCTGTATTCAAGGTGCGTGCAAGTGAGCATAGACACCGATCGTTATGAAAAAAGATGCAAGCTTGTGGTCCTATAGGTGCTCCTGATGCTTTGAGTCTTGCATTTTGTGATTTTCTGTTTTCATTTCTCTTTTTCTTTTTTTTGTGTTTTGGGGATGGTTTTGCACAAAAGTTTATCAATAACCTCAAGGTACATGTTACCCTACCCAGAAGCCACTTTTTTGAACTACACGGGGTATGTTGTCCTTGTACAAAAGTAGAAGGATGAATGAAGTGTTGACTAGCTTGGTTGGGAAAATTGTTATGTTTAACGAATTGATCTTTTTCAGTTATATTTCTTGAAGTCTTCACATGCTTACACAAGTAATGTTAATCGGTGTTCTTGATATATATCAACTAGTGTAGGATATAAAAATTTGGTGGATTGGTTCTCAATCACAGCCTCTAGCACAAAGTAGTGATTTTTAAGTCGTATTTGATCTATATACCGACCCAATGGTATACTCCTCGATTGTGTTTTGGTCACACATACACCAGTTTTGACTTTTTTTTTTTTTTTTTTACCTTAGAATACAAGGTGCATTCATACAATCGAAATGGTTTATGTGCTTTGGGCTTCATGGATGATCACTATCCAGTTCGAAGTGCATTTTCACTGCTCAACCAGGTATAGGCTCTTTATTATAGATATTCATCTTTGAGAGGAGAAACTCTATATATGGAGAAATCAAATTATGGATCTGCATCTCATTTTTCCAGGTTTTGGATGAGTATCTGAAGAATTTTGGTGAGTCATGGAAGACGGCTCAATGCGACAATGCTCAACCATGGCCTTATCTGAATGAAGCTCTAGCCAAATTTCAGGTTCCCCTTCTGTTTTTGTTTTCTGGGTGATGATGGAATTTCATTTTCAATCAAATTCTTCCCACTTTCATCTTAAAACAATTGACGTTTGAGCTGATCATGTTGACCCCTACAGGATCCTGCTGAGGCCGATAAGCTGTTCAAAATTCAACGAGAGTTGGATGAAACAAAAATTATTCTCGTAAGTATTGTGTTATTCTCATGATTGCCTGCTTAATGTCATCTTTTTAAGCTCTTTATTCCAAGATGATTGGGAGCAGTTTGCATTTGGATAATGTTTGTTGATCATTGAGTGAGTTCCAGAAGACCTGGACAGAATACAAATTCTCCATTTTTTTGGTTAATGATCTATATCCCCTGATGGTTATATATGGACATGTAACTCCTAGCCACTGCCAGCCATTTTCCTGTAGAGCTTCTGCTCGTGCATTGAATTACCGATGAAATTACTAATTAATTTTGTATTGCTTTTACAAGTTGAAATCATTTGTATGCTGGAGTCTACCACATTGGTTTGAGGGAATAGGTTATATATATGTGTGTGTGTCTGTGTGGTATGGGGTGCGGGGTATCCCACACATAAGCTAACTCTTTGAGATGGTGTTAGGCCCAAGGTCTGTTTTCTAGAATTTGACAAGTATGTTGCCACTTTTTGGTGGATGTGTATCTACCTTCATTATTTGATGTCTAGTTAAGTTTATTTTTGAGTTCCTAATATATTTGTTACGTTATCCAAGTAGTTTAACGGTCATATGCTTTCATTGATAAGCTTTCCAAGTTATTTACACTTTGTCCCTCACTCCCTCTTGTAGGCCATGGTTATTTCTTTGAGTAGTACCTCGTTTGACCTTCCTGGTGCATTTTAAGCAAACTATTCTTACGTGGACATCCTAAAGCTTTAAAATCAAATGCCCGTGTTGAAAACATGCTGTTGGGTGGGAATAGGAAAGCAAATATATTCTTACATTGCGTTACTTAAATGTGTTTTTAGAAGTAACTTCTCTTTTTAGTTGTGTTTATTTGTATTTCCTTTCTAAATATGCACTGTACTTATCAAATATTCATGCATATTAATGCATGAAGGAGTTCTGGTCCTCTTTTTTTGGTTGCTGTTAGCTGTGCTGATATTGGTTTCTCTTACCTTTTGACACAGCATAAGACAATTGACAGTGTCTTAGAACGTGGTGAGAAGCTAGACAGTTTGGTTGAGAAGAGTTCAGATCTCAGTGCTGCTTCACAGGTAATGCATCTGTTAAGAGGATTATAATCTTGAAAAGAAGATGAACGCTGTTTAACAATGAACAGTTCTTCATCTTTCCTCTTAGGTGGAATATTTTTCCTCTACTATTTTTATCAATTTATTTTGACAATTCAGATTATGTCTACTGTTGTGTGGATAATACTCGGATCTTTCAACAATGTTATTGCTATGGCTCACTAACTAAAAAGATCCAAGTGGTTTTTTTACGCTCAGTATCAAGTTGCACGGGGAGGTTATTTGCAATTTCTTTGTGGGAAGTATTTTACAAGTCACATTTTCTCTACAAGCATGGTGGACATGGCATGATAGGTGCAGGCGCATGCCATGGAACCATTAATTGAATAATATGGACATACAGAACTGAGCAACAAGTTTTGTAGTATTATCACACTAAATACACACATCTTCCTGCTAAGTGAACTCGTGTCAAAGAACACTGTCGAATATTGTTCTGCATTATATGTCCATTGGGTTTTGGGAGTTCTTTAGTTGAATTAAAAGACACTTCATGCTAAATTTTCTACTTGTGGAGGGAGAGGAACAAATGAAGCTTCTTGGTGGCTGGGAAAGTAAACATCTGATATAAGCTGTGTTCTATTATGCATGAACTGTATTTCGCTGGATCCCTTTGTGGTATAACCATGGATGTGATGATGTTAGTCTTTTATTACTATTTCTTCTGCTAATTTTAATATTGTAGAAGCTGCTGACTCTTAAACATTATCTGTGAGCCTCTACTAGTTTCGGCTTTTTTCCTGACATGACCTGTTTGATTTCTAAACAGATGTTCTACAAG</genome_strand>
        <mrna_strand>AGTTCTATTCCTTCGAAGGCGGCCATAGAAGAGAGGAAAAAAAAAATTCTTTGAAATTTATTTTGGTGTTTTTGGATAATTTTTTGAAGAAGTTTGAGAGGTTTAGAGAGAAAAACAGAGATGAAGATCACAGCTTTGATGGTGTTGAAATGCAATCCAGAAGGTTCGGATCCTGTGATCTTAGCAAACGCTTCTGATGTTAACCATTTTGGGTATTTTCAGAGATCCAGCGTTAAGGAATTTATCGTTTTTGTGGGTCGAACTGTTGCTAAAAGGAACCCACCTGGACAACGACAATCTGTTCAGCATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAAGGTGCATTCATACAATCGAAATGGTTTATGTGCTTTGGGCTTCATGGATGATCACTATCCAGTTCGAAGTGCATTTTCACTGCTCAACCAG............................................................................................GTTTTGGATGAGTATCTGAAGAATTTTGGTGAGTCATGGAAGACGGCTCAATGCGACAATGCTCAACCATGGCCTTATCTGAATGAAGCTCTAGCCAAATTTCAG...................................................................................................................GATCCTGCTGAGGCCGATAAGCTGTTCAAAATTCAACGAGAGTTGGATGAAACAAAAATTATTCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAAGACAATTGACAGTGTCTTACAACGTGGTGAGAAGCTAGACAGTTTGGTTGAGAAGAGTTCACATCTCAGTGCTGCTTCACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E296393" ref_strand="+" ref_description="SGN-E296393 	[cLET-19-N15]">
      <seq>agagagagaggaaaaaaaaaattctttgaaatttattttggtgtttttggataattttttgaagaagtttgagaggtttagagagaaaaacagagatgaagatcacagctttgatggtgttgaaatgcaatccagaaggttcggatcctgtgatcttagcaaacgcttctgatgttaaccattttgggtattttcagagatccagcgttaaggaatttatcgtttttgtgggtcgaactgttgctaaaaggaacccacctggacaacgacaatctgttcagcatgaagaatacaaggtgcattcatacaatcgaaatggtttatgtgctttgggcttcatggatgatcactatccagttcgaagtgcattttcactgctcaaccaggttttggatgagtatctgaagaattttggtgagtcatggaagacggctcaatgcgacaatgctcaaccatggccttatctgaatgaagctctagccaaatttcaggatcctgctgaggccgataagctgttcaaaattcaacgagagttggatgaaacaaaaattattctccataagacaattgacagtgtcttagaacgtggtgagaagctagacagtttggttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="65959" stop="62675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65661" g_stop="65374" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65373" i_stop="64480" i_length="894">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64479" g_stop="64382" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="386" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64381" i_stop="64290" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64289" g_stop="64185" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="491" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64184" i_stop="64070" i_length="115">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64069" g_stop="64004" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="557" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64003" i_stop="63032" i_length="972">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63031" g_stop="62975" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="614" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E296393" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65661" e_stop="65374"/>
          <exon e_start="64479" e_stop="64382"/>
          <exon e_start="64289" e_stop="64185"/>
          <exon e_start="64069" e_stop="64004"/>
          <exon e_start="63031" e_stop="62975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAAGAGAGG-AAAAAAAAATTCTTTGAAATTTATTTTGGTGTTTTTGGATAATTTTTTGAAGAAGTTTGAGAGGTTTAGAGAGAAAAACAGAGATGAAGATCACAGCTTTGATGGTGTTGAAATGCAATCCAGAAGGTTCGGATCCTGTGATCTTAGCAAACGCTTCTGATGTTAACCATTTTGGGTATTTTCAGAGATCCAGCGTTAAGGAATTTATCGTTTTTGTGGGTCGAACTGTTGCTAAAAGGAACCCACCTGGACAACGACAATCTGTTCAGCATGAAGGTTTGATTTTTCCAACACCCTTTTGGTTGATTTGGTTATGGGGTTGTCTTATCTTGGTTTTGGGGAATCAAATATGTTGTTTGGTTTTGGTGGAATTGTAGATGTCTTGTGGATTGATGATTTTTTTGTTTTTTATTGGATGTTTGGATTTGTGATATTAGGTAGGTTGCAGCTCAATTTGCTGTTTCTATTGGTAAAGTGTATAGATGGATGAGTAATGTTGCAAAGTTAGACAAAAAAAGTAGGATTTCTTCCCATCTGTTTTAGCTTTGTAGATAATTGAATATAGTTAGCTGGTACCTATGGCTGGAGGGAGGTGGCAGGTACCTGTATTCAAGGTGCGTGCAAGTGAGCATAGACACCGATCGTTATGAAAAAAGATGCAAGCTTGTGGTCCTATAGGTGCTCCTGATGCTTTGAGTCTTGCATTTTGTGATTTTCTGTTTTCATTTCTCTTTTTCTTTTTTTTGTGTTTTGGGGATGGTTTTGCACAAAAGTTTATCAATAACCTCAAGGTACATGTTACCCTACCCAGAAGCCACTTTTTTGAACTACACGGGGTATGTTGTCCTTGTACAAAAGTAGAAGGATGAATGAAGTGTTGACTAGCTTGGTTGGGAAAATTGTTATGTTTAACGAATTGATCTTTTTCAGTTATATTTCTTGAAGTCTTCACATGCTTACACAAGTAATGTTAATCGGTGTTCTTGATATATATCAACTAGTGTAGGATATAAAAATTTGGTGGATTGGTTCTCAATCACAGCCTCTAGCACAAAGTAGTGATTTTTAAGTCGTATTTGATCTATATACCGACCCAATGGTATACTCCTCGATTGTGTTTTGGTCACACATACACCAGTTTTGACTTTTTTTTTTTTTTTTTTACCTTAGAATACAAGGTGCATTCATACAATCGAAATGGTTTATGTGCTTTGGGCTTCATGGATGATCACTATCCAGTTCGAAGTGCATTTTCACTGCTCAACCAGGTATAGGCTCTTTATTATAGATATTCATCTTTGAGAGGAGAAACTCTATATATGGAGAAATCAAATTATGGATCTGCATCTCATTTTTCCAGGTTTTGGATGAGTATCTGAAGAATTTTGGTGAGTCATGGAAGACGGCTCAATGCGACAATGCTCAACCATGGCCTTATCTGAATGAAGCTCTAGCCAAATTTCAGGTTCCCCTTCTGTTTTTGTTTTCTGGGTGATGATGGAATTTCATTTTCAATCAAATTCTTCCCACTTTCATCTTAAAACAATTGACGTTTGAGCTGATCATGTTGACCCCTACAGGATCCTGCTGAGGCCGATAAGCTGTTCAAAATTCAACGAGAGTTGGATGAAACAAAAATTATTCTCGTAAGTATTGTGTTATTCTCATGATTGCCTGCTTAATGTCATCTTTTTAAGCTCTTTATTCCAAGATGATTGGGAGCAGTTTGCATTTGGATAATGTTTGTTGATCATTGAGTGAGTTCCAGAAGACCTGGACAGAATACAAATTCTCCATTTTTTTGGTTAATGATCTATATCCCCTGATGGTTATATATGGACATGTAACTCCTAGCCACTGCCAGCCATTTTCCTGTAGAGCTTCTGCTCGTGCATTGAATTACCGATGAAATTACTAATTAATTTTGTATTGCTTTTACAAGTTGAAATCATTTGTATGCTGGAGTCTACCACATTGGTTTGAGGGAATAGGTTATATATATGTGTGTGTGTCTGTGTGGTATGGGGTGCGGGGTATCCCACACATAAGCTAACTCTTTGAGATGGTGTTAGGCCCAAGGTCTGTTTTCTAGAATTTGACAAGTATGTTGCCACTTTTTGGTGGATGTGTATCTACCTTCATTATTTGATGTCTAGTTAAGTTTATTTTTGAGTTCCTAATATATTTGTTACGTTATCCAAGTAGTTTAACGGTCATATGCTTTCATTGATAAGCTTTCCAAGTTATTTACACTTTGTCCCTCACTCCCTCTTGTAGGCCATGGTTATTTCTTTGAGTAGTACCTCGTTTGACCTTCCTGGTGCATTTTAAGCAAACTATTCTTACGTGGACATCCTAAAGCTTTAAAATCAAATGCCCGTGTTGAAAACATGCTGTTGGGTGGGAATAGGAAAGCAAATATATTCTTACATTGCGTTACTTAAATGTGTTTTTAGAAGTAACTTCTCTTTTTAGTTGTGTTTATTTGTATTTCCTTTCTAAATATGCACTGTACTTATCAAATATTCATGCATATTAATGCATGAAGGAGTTCTGGTCCTCTTTTTTTGGTTGCTGTTAGCTGTGCTGATATTGGTTTCTCTTACCTTTTGACACAGCATAAGACAATTGACAGTGTCTTAGAACGTGGTGAGAAGCTAGACAGTTTGGTTGAG</genome_strand>
        <mrna_strand>AGAG-AGAGAGGAAAAAAAAAATTCTTTGAAATTTATTTTGGTGTTTTTGGATAATTTTTTGAAGAAGTTTGAGAGGTTTAGAGAGAAAAACAGAGATGAAGATCACAGCTTTGATGGTGTTGAAATGCAATCCAGAAGGTTCGGATCCTGTGATCTTAGCAAACGCTTCTGATGTTAACCATTTTGGGTATTTTCAGAGATCCAGCGTTAAGGAATTTATCGTTTTTGTGGGTCGAACTGTTGCTAAAAGGAACCCACCTGGACAACGACAATCTGTTCAGCATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAAGGTGCATTCATACAATCGAAATGGTTTATGTGCTTTGGGCTTCATGGATGATCACTATCCAGTTCGAAGTGCATTTTCACTGCTCAACCAG............................................................................................GTTTTGGATGAGTATCTGAAGAATTTTGGTGAGTCATGGAAGACGGCTCAATGCGACAATGCTCAACCATGGCCTTATCTGAATGAAGCTCTAGCCAAATTTCAG...................................................................................................................GATCCTGCTGAGGCCGATAAGCTGTTCAAAATTCAACGAGAGTTGGATGAAACAAAAATTATTCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAAGACAATTGACAGTGTCTTAGAACGTGGTGAGAAGCTAGACAGTTTGGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E296535" ref_strand="+" ref_description="SGN-E296535 	[cLET-19-N15]">
      <seq>agagagagaggaaaaaaaaaattctttgaaatttattttggtgtttttggataattttttgaagaagtttgagaggtttagagagaaaaacagagatgaagatcacagctttgatggtgttgaaatgcaatccagaaggttcggatcctgtgatcttagcaaacgcttctgatgttaaccattttgggtattttcagagatccagcgttaaggaatttatcgtttttgtgggtcgaactgttgctaaaaggaacccacctggacaacgacaatctgttcagcatgaagaatacaaggtgcattcatacaatcgaaatggtttatgtgctttgggcttcatggatgatcactatccagttcgaagtgcattttcactgctcaaccaggttttggatgagtatctgaagaattttggtgagtcatggaagacggctcaatgcgacaatgctcaaccatggccttatctgaatgaagctctagccaaatttcaggatcctgctgaggccgataagctgttcaaaattcaacgagagttggatgaaacaaaaattattctccataagacaattgacagtgtcttagaacgtggtgagaagctagacagtttggttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="65959" stop="62675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65661" g_stop="65374" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65373" i_stop="64480" i_length="894">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64479" g_stop="64382" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="386" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64381" i_stop="64290" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64289" g_stop="64185" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="491" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64184" i_stop="64070" i_length="115">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64069" g_stop="64004" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="557" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64003" i_stop="63032" i_length="972">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63031" g_stop="62975" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="614" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E296535" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65661" e_stop="65374"/>
          <exon e_start="64479" e_stop="64382"/>
          <exon e_start="64289" e_stop="64185"/>
          <exon e_start="64069" e_stop="64004"/>
          <exon e_start="63031" e_stop="62975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAAGAGAGG-AAAAAAAAATTCTTTGAAATTTATTTTGGTGTTTTTGGATAATTTTTTGAAGAAGTTTGAGAGGTTTAGAGAGAAAAACAGAGATGAAGATCACAGCTTTGATGGTGTTGAAATGCAATCCAGAAGGTTCGGATCCTGTGATCTTAGCAAACGCTTCTGATGTTAACCATTTTGGGTATTTTCAGAGATCCAGCGTTAAGGAATTTATCGTTTTTGTGGGTCGAACTGTTGCTAAAAGGAACCCACCTGGACAACGACAATCTGTTCAGCATGAAGGTTTGATTTTTCCAACACCCTTTTGGTTGATTTGGTTATGGGGTTGTCTTATCTTGGTTTTGGGGAATCAAATATGTTGTTTGGTTTTGGTGGAATTGTAGATGTCTTGTGGATTGATGATTTTTTTGTTTTTTATTGGATGTTTGGATTTGTGATATTAGGTAGGTTGCAGCTCAATTTGCTGTTTCTATTGGTAAAGTGTATAGATGGATGAGTAATGTTGCAAAGTTAGACAAAAAAAGTAGGATTTCTTCCCATCTGTTTTAGCTTTGTAGATAATTGAATATAGTTAGCTGGTACCTATGGCTGGAGGGAGGTGGCAGGTACCTGTATTCAAGGTGCGTGCAAGTGAGCATAGACACCGATCGTTATGAAAAAAGATGCAAGCTTGTGGTCCTATAGGTGCTCCTGATGCTTTGAGTCTTGCATTTTGTGATTTTCTGTTTTCATTTCTCTTTTTCTTTTTTTTGTGTTTTGGGGATGGTTTTGCACAAAAGTTTATCAATAACCTCAAGGTACATGTTACCCTACCCAGAAGCCACTTTTTTGAACTACACGGGGTATGTTGTCCTTGTACAAAAGTAGAAGGATGAATGAAGTGTTGACTAGCTTGGTTGGGAAAATTGTTATGTTTAACGAATTGATCTTTTTCAGTTATATTTCTTGAAGTCTTCACATGCTTACACAAGTAATGTTAATCGGTGTTCTTGATATATATCAACTAGTGTAGGATATAAAAATTTGGTGGATTGGTTCTCAATCACAGCCTCTAGCACAAAGTAGTGATTTTTAAGTCGTATTTGATCTATATACCGACCCAATGGTATACTCCTCGATTGTGTTTTGGTCACACATACACCAGTTTTGACTTTTTTTTTTTTTTTTTTACCTTAGAATACAAGGTGCATTCATACAATCGAAATGGTTTATGTGCTTTGGGCTTCATGGATGATCACTATCCAGTTCGAAGTGCATTTTCACTGCTCAACCAGGTATAGGCTCTTTATTATAGATATTCATCTTTGAGAGGAGAAACTCTATATATGGAGAAATCAAATTATGGATCTGCATCTCATTTTTCCAGGTTTTGGATGAGTATCTGAAGAATTTTGGTGAGTCATGGAAGACGGCTCAATGCGACAATGCTCAACCATGGCCTTATCTGAATGAAGCTCTAGCCAAATTTCAGGTTCCCCTTCTGTTTTTGTTTTCTGGGTGATGATGGAATTTCATTTTCAATCAAATTCTTCCCACTTTCATCTTAAAACAATTGACGTTTGAGCTGATCATGTTGACCCCTACAGGATCCTGCTGAGGCCGATAAGCTGTTCAAAATTCAACGAGAGTTGGATGAAACAAAAATTATTCTCGTAAGTATTGTGTTATTCTCATGATTGCCTGCTTAATGTCATCTTTTTAAGCTCTTTATTCCAAGATGATTGGGAGCAGTTTGCATTTGGATAATGTTTGTTGATCATTGAGTGAGTTCCAGAAGACCTGGACAGAATACAAATTCTCCATTTTTTTGGTTAATGATCTATATCCCCTGATGGTTATATATGGACATGTAACTCCTAGCCACTGCCAGCCATTTTCCTGTAGAGCTTCTGCTCGTGCATTGAATTACCGATGAAATTACTAATTAATTTTGTATTGCTTTTACAAGTTGAAATCATTTGTATGCTGGAGTCTACCACATTGGTTTGAGGGAATAGGTTATATATATGTGTGTGTGTCTGTGTGGTATGGGGTGCGGGGTATCCCACACATAAGCTAACTCTTTGAGATGGTGTTAGGCCCAAGGTCTGTTTTCTAGAATTTGACAAGTATGTTGCCACTTTTTGGTGGATGTGTATCTACCTTCATTATTTGATGTCTAGTTAAGTTTATTTTTGAGTTCCTAATATATTTGTTACGTTATCCAAGTAGTTTAACGGTCATATGCTTTCATTGATAAGCTTTCCAAGTTATTTACACTTTGTCCCTCACTCCCTCTTGTAGGCCATGGTTATTTCTTTGAGTAGTACCTCGTTTGACCTTCCTGGTGCATTTTAAGCAAACTATTCTTACGTGGACATCCTAAAGCTTTAAAATCAAATGCCCGTGTTGAAAACATGCTGTTGGGTGGGAATAGGAAAGCAAATATATTCTTACATTGCGTTACTTAAATGTGTTTTTAGAAGTAACTTCTCTTTTTAGTTGTGTTTATTTGTATTTCCTTTCTAAATATGCACTGTACTTATCAAATATTCATGCATATTAATGCATGAAGGAGTTCTGGTCCTCTTTTTTTGGTTGCTGTTAGCTGTGCTGATATTGGTTTCTCTTACCTTTTGACACAGCATAAGACAATTGACAGTGTCTTAGAACGTGGTGAGAAGCTAGACAGTTTGGTTGAG</genome_strand>
        <mrna_strand>AGAG-AGAGAGGAAAAAAAAAATTCTTTGAAATTTATTTTGGTGTTTTTGGATAATTTTTTGAAGAAGTTTGAGAGGTTTAGAGAGAAAAACAGAGATGAAGATCACAGCTTTGATGGTGTTGAAATGCAATCCAGAAGGTTCGGATCCTGTGATCTTAGCAAACGCTTCTGATGTTAACCATTTTGGGTATTTTCAGAGATCCAGCGTTAAGGAATTTATCGTTTTTGTGGGTCGAACTGTTGCTAAAAGGAACCCACCTGGACAACGACAATCTGTTCAGCATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAAGGTGCATTCATACAATCGAAATGGTTTATGTGCTTTGGGCTTCATGGATGATCACTATCCAGTTCGAAGTGCATTTTCACTGCTCAACCAG............................................................................................GTTTTGGATGAGTATCTGAAGAATTTTGGTGAGTCATGGAAGACGGCTCAATGCGACAATGCTCAACCATGGCCTTATCTGAATGAAGCTCTAGCCAAATTTCAG...................................................................................................................GATCCTGCTGAGGCCGATAAGCTGTTCAAAATTCAACGAGAGTTGGATGAAACAAAAATTATTCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAAGACAATTGACAGTGTCTTAGAACGTGGTGAGAAGCTAGACAGTTTGGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E232070" ref_strand="+" ref_description="SGN-E232070 	[cLED-7-H23]">
      <seq>gaagatcacagctttgatggtgttgaaatgcaatccagaaggttcggatcctgtgatcttagcaaacgcttctgatgttaaccattttgggtattttcagagatccagcgttaaggaatttatcgtttttgtgggtcgaactgttgctaaaaggaacccacctggacaacgacaatctgttcagcatgaagaatacaaggtgcattcatacaatcgaaatggtttatgtgctttgggcttcatggatgatcactatccagttcgaagtgcattttcactgctcaaccaggttttggatgagtatctgaagaattttggtgagtcatggaagacggctcaatgcgacaatgctcaaccatggccttatctgaatgaagctctagccaaatttcaggatcctgctgaggccgataagctgttcaaaattcaacgagagttggatgaaacataaattattctccataagacaattgacagtgtcttagaacgtggtgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="65864" stop="62694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65564" g_stop="65374" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65373" i_stop="64480" i_length="894">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64479" g_stop="64382" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="289" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64381" i_stop="64290" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64289" g_stop="64185" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="394" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64184" i_stop="64070" i_length="115">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64069" g_stop="64004" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="460" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64003" i_stop="63032" i_length="972">
            <donor d_prob="0.910" d_score="0.98"/>
            <acceptor a_prob="0.891" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63031" g_stop="62994" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="498" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E232070" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65564" e_stop="65374"/>
          <exon e_start="64479" e_stop="64382"/>
          <exon e_start="64289" e_stop="64185"/>
          <exon e_start="64069" e_stop="64004"/>
          <exon e_start="63031" e_stop="62994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATCACAGCTTTGATGGTGTTGAAATGCAATCCAGAAGGTTCGGATCCTGTGATCTTAGCAAACGCTTCTGATGTTAACCATTTTGGGTATTTTCAGAGATCCAGCGTTAAGGAATTTATCGTTTTTGTGGGTCGAACTGTTGCTAAAAGGAACCCACCTGGACAACGACAATCTGTTCAGCATGAAGGTTTGATTTTTCCAACACCCTTTTGGTTGATTTGGTTATGGGGTTGTCTTATCTTGGTTTTGGGGAATCAAATATGTTGTTTGGTTTTGGTGGAATTGTAGATGTCTTGTGGATTGATGATTTTTTTGTTTTTTATTGGATGTTTGGATTTGTGATATTAGGTAGGTTGCAGCTCAATTTGCTGTTTCTATTGGTAAAGTGTATAGATGGATGAGTAATGTTGCAAAGTTAGACAAAAAAAGTAGGATTTCTTCCCATCTGTTTTAGCTTTGTAGATAATTGAATATAGTTAGCTGGTACCTATGGCTGGAGGGAGGTGGCAGGTACCTGTATTCAAGGTGCGTGCAAGTGAGCATAGACACCGATCGTTATGAAAAAAGATGCAAGCTTGTGGTCCTATAGGTGCTCCTGATGCTTTGAGTCTTGCATTTTGTGATTTTCTGTTTTCATTTCTCTTTTTCTTTTTTTTGTGTTTTGGGGATGGTTTTGCACAAAAGTTTATCAATAACCTCAAGGTACATGTTACCCTACCCAGAAGCCACTTTTTTGAACTACACGGGGTATGTTGTCCTTGTACAAAAGTAGAAGGATGAATGAAGTGTTGACTAGCTTGGTTGGGAAAATTGTTATGTTTAACGAATTGATCTTTTTCAGTTATATTTCTTGAAGTCTTCACATGCTTACACAAGTAATGTTAATCGGTGTTCTTGATATATATCAACTAGTGTAGGATATAAAAATTTGGTGGATTGGTTCTCAATCACAGCCTCTAGCACAAAGTAGTGATTTTTAAGTCGTATTTGATCTATATACCGACCCAATGGTATACTCCTCGATTGTGTTTTGGTCACACATACACCAGTTTTGACTTTTTTTTTTTTTTTTTTACCTTAGAATACAAGGTGCATTCATACAATCGAAATGGTTTATGTGCTTTGGGCTTCATGGATGATCACTATCCAGTTCGAAGTGCATTTTCACTGCTCAACCAGGTATAGGCTCTTTATTATAGATATTCATCTTTGAGAGGAGAAACTCTATATATGGAGAAATCAAATTATGGATCTGCATCTCATTTTTCCAGGTTTTGGATGAGTATCTGAAGAATTTTGGTGAGTCATGGAAGACGGCTCAATGCGACAATGCTCAACCATGGCCTTATCTGAATGAAGCTCTAGCCAAATTTCAGGTTCCCCTTCTGTTTTTGTTTTCTGGGTGATGATGGAATTTCATTTTCAATCAAATTCTTCCCACTTTCATCTTAAAACAATTGACGTTTGAGCTGATCATGTTGACCCCTACAGGATCCTGCTGAGGCCGATAAGCTGTTCAAAATTCAACGAGAGTTGGATGAAACAAAAATTATTCTCGTAAGTATTGTGTTATTCTCATGATTGCCTGCTTAATGTCATCTTTTTAAGCTCTTTATTCCAAGATGATTGGGAGCAGTTTGCATTTGGATAATGTTTGTTGATCATTGAGTGAGTTCCAGAAGACCTGGACAGAATACAAATTCTCCATTTTTTTGGTTAATGATCTATATCCCCTGATGGTTATATATGGACATGTAACTCCTAGCCACTGCCAGCCATTTTCCTGTAGAGCTTCTGCTCGTGCATTGAATTACCGATGAAATTACTAATTAATTTTGTATTGCTTTTACAAGTTGAAATCATTTGTATGCTGGAGTCTACCACATTGGTTTGAGGGAATAGGTTATATATATGTGTGTGTGTCTGTGTGGTATGGGGTGCGGGGTATCCCACACATAAGCTAACTCTTTGAGATGGTGTTAGGCCCAAGGTCTGTTTTCTAGAATTTGACAAGTATGTTGCCACTTTTTGGTGGATGTGTATCTACCTTCATTATTTGATGTCTAGTTAAGTTTATTTTTGAGTTCCTAATATATTTGTTACGTTATCCAAGTAGTTTAACGGTCATATGCTTTCATTGATAAGCTTTCCAAGTTATTTACACTTTGTCCCTCACTCCCTCTTGTAGGCCATGGTTATTTCTTTGAGTAGTACCTCGTTTGACCTTCCTGGTGCATTTTAAGCAAACTATTCTTACGTGGACATCCTAAAGCTTTAAAATCAAATGCCCGTGTTGAAAACATGCTGTTGGGTGGGAATAGGAAAGCAAATATATTCTTACATTGCGTTACTTAAATGTGTTTTTAGAAGTAACTTCTCTTTTTAGTTGTGTTTATTTGTATTTCCTTTCTAAATATGCACTGTACTTATCAAATATTCATGCATATTAATGCATGAAGGAGTTCTGGTCCTCTTTTTTTGGTTGCTGTTAGCTGTGCTGATATTGGTTTCTCTTACCTTTTGACACAGCATAAGACAATTGACAGTGTCTTAGAACGTGGTGAGAA</genome_strand>
        <mrna_strand>GAAGATCACAGCTTTGATGGTGTTGAAATGCAATCCAGAAGGTTCGGATCCTGTGATCTTAGCAAACGCTTCTGATGTTAACCATTTTGGGTATTTTCAGAGATCCAGCGTTAAGGAATTTATCGTTTTTGTGGGTCGAACTGTTGCTAAAAGGAACCCACCTGGACAACGACAATCTGTTCAGCATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAAGGTGCATTCATACAATCGAAATGGTTTATGTGCTTTGGGCTTCATGGATGATCACTATCCAGTTCGAAGTGCATTTTCACTGCTCAACCAG............................................................................................GTTTTGGATGAGTATCTGAAGAATTTTGGTGAGTCATGGAAGACGGCTCAATGCGACAATGCTCAACCATGGCCTTATCTGAATGAAGCTCTAGCCAAATTTCAG...................................................................................................................GATCCTGCTGAGGCCGATAAGCTGTTCAAAATTCAACGAGAGTTGGATGAAACATAAATTATTCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAAGACAATTGACAGTGTCTTAGAACGTGGTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E270889" ref_strand="+" ref_description="SGN-E270889 	[cLEM-6-H9]">
      <seq>aaaaacagagatgaagatcacagctttgatggtgttgaaatgcaatccagaaggttcggatcctgtgatcttagcaaacgcttctgatgttaaccattttgggtattttcagagatccagcgttaaggaatttatcgtttttgtgggtcgaactgttgctaaaaggaacccacctggacaacgacaatctgttcagcatgaagaatacaaggtgcattcatacaatcgaaatggtttatgtgctttgggcttcatggatgatcactatccagttcgaagtgcattttcactgctcaaccaggttttggatgagtatctgaagaattttggtgagtcatggaagacggctcaatgcgacaatgctcaaccatggccttatctgaatgaagctctagccaaatttcaggatcctgctgaggccgataagctgttcaaaattcaacgagagttggatgaaacaaaaattattctccataagacaattgacagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="65876" stop="62713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65576" g_stop="65374" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65373" i_stop="64480" i_length="894">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64479" g_stop="64382" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="301" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64381" i_stop="64290" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64289" g_stop="64185" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="406" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64184" i_stop="64070" i_length="115">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64069" g_stop="64004" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="472" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64003" i_stop="63032" i_length="972">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63031" g_stop="63013" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="491" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E270889" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65576" e_stop="65374"/>
          <exon e_start="64479" e_stop="64382"/>
          <exon e_start="64289" e_stop="64185"/>
          <exon e_start="64069" e_stop="64004"/>
          <exon e_start="63031" e_stop="63013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAGAGATGAAGATCACAGCTTTGATGGTGTTGAAATGCAATCCAGAAGGTTCGGATCCTGTGATCTTAGCAAACGCTTCTGATGTTAACCATTTTGGGTATTTTCAGAGATCCAGCGTTAAGGAATTTATCGTTTTTGTGGGTCGAACTGTTGCTAAAAGGAACCCACCTGGACAACGACAATCTGTTCAGCATGAAGGTTTGATTTTTCCAACACCCTTTTGGTTGATTTGGTTATGGGGTTGTCTTATCTTGGTTTTGGGGAATCAAATATGTTGTTTGGTTTTGGTGGAATTGTAGATGTCTTGTGGATTGATGATTTTTTTGTTTTTTATTGGATGTTTGGATTTGTGATATTAGGTAGGTTGCAGCTCAATTTGCTGTTTCTATTGGTAAAGTGTATAGATGGATGAGTAATGTTGCAAAGTTAGACAAAAAAAGTAGGATTTCTTCCCATCTGTTTTAGCTTTGTAGATAATTGAATATAGTTAGCTGGTACCTATGGCTGGAGGGAGGTGGCAGGTACCTGTATTCAAGGTGCGTGCAAGTGAGCATAGACACCGATCGTTATGAAAAAAGATGCAAGCTTGTGGTCCTATAGGTGCTCCTGATGCTTTGAGTCTTGCATTTTGTGATTTTCTGTTTTCATTTCTCTTTTTCTTTTTTTTGTGTTTTGGGGATGGTTTTGCACAAAAGTTTATCAATAACCTCAAGGTACATGTTACCCTACCCAGAAGCCACTTTTTTGAACTACACGGGGTATGTTGTCCTTGTACAAAAGTAGAAGGATGAATGAAGTGTTGACTAGCTTGGTTGGGAAAATTGTTATGTTTAACGAATTGATCTTTTTCAGTTATATTTCTTGAAGTCTTCACATGCTTACACAAGTAATGTTAATCGGTGTTCTTGATATATATCAACTAGTGTAGGATATAAAAATTTGGTGGATTGGTTCTCAATCACAGCCTCTAGCACAAAGTAGTGATTTTTAAGTCGTATTTGATCTATATACCGACCCAATGGTATACTCCTCGATTGTGTTTTGGTCACACATACACCAGTTTTGACTTTTTTTTTTTTTTTTTTACCTTAGAATACAAGGTGCATTCATACAATCGAAATGGTTTATGTGCTTTGGGCTTCATGGATGATCACTATCCAGTTCGAAGTGCATTTTCACTGCTCAACCAGGTATAGGCTCTTTATTATAGATATTCATCTTTGAGAGGAGAAACTCTATATATGGAGAAATCAAATTATGGATCTGCATCTCATTTTTCCAGGTTTTGGATGAGTATCTGAAGAATTTTGGTGAGTCATGGAAGACGGCTCAATGCGACAATGCTCAACCATGGCCTTATCTGAATGAAGCTCTAGCCAAATTTCAGGTTCCCCTTCTGTTTTTGTTTTCTGGGTGATGATGGAATTTCATTTTCAATCAAATTCTTCCCACTTTCATCTTAAAACAATTGACGTTTGAGCTGATCATGTTGACCCCTACAGGATCCTGCTGAGGCCGATAAGCTGTTCAAAATTCAACGAGAGTTGGATGAAACAAAAATTATTCTCGTAAGTATTGTGTTATTCTCATGATTGCCTGCTTAATGTCATCTTTTTAAGCTCTTTATTCCAAGATGATTGGGAGCAGTTTGCATTTGGATAATGTTTGTTGATCATTGAGTGAGTTCCAGAAGACCTGGACAGAATACAAATTCTCCATTTTTTTGGTTAATGATCTATATCCCCTGATGGTTATATATGGACATGTAACTCCTAGCCACTGCCAGCCATTTTCCTGTAGAGCTTCTGCTCGTGCATTGAATTACCGATGAAATTACTAATTAATTTTGTATTGCTTTTACAAGTTGAAATCATTTGTATGCTGGAGTCTACCACATTGGTTTGAGGGAATAGGTTATATATATGTGTGTGTGTCTGTGTGGTATGGGGTGCGGGGTATCCCACACATAAGCTAACTCTTTGAGATGGTGTTAGGCCCAAGGTCTGTTTTCTAGAATTTGACAAGTATGTTGCCACTTTTTGGTGGATGTGTATCTACCTTCATTATTTGATGTCTAGTTAAGTTTATTTTTGAGTTCCTAATATATTTGTTACGTTATCCAAGTAGTTTAACGGTCATATGCTTTCATTGATAAGCTTTCCAAGTTATTTACACTTTGTCCCTCACTCCCTCTTGTAGGCCATGGTTATTTCTTTGAGTAGTACCTCGTTTGACCTTCCTGGTGCATTTTAAGCAAACTATTCTTACGTGGACATCCTAAAGCTTTAAAATCAAATGCCCGTGTTGAAAACATGCTGTTGGGTGGGAATAGGAAAGCAAATATATTCTTACATTGCGTTACTTAAATGTGTTTTTAGAAGTAACTTCTCTTTTTAGTTGTGTTTATTTGTATTTCCTTTCTAAATATGCACTGTACTTATCAAATATTCATGCATATTAATGCATGAAGGAGTTCTGGTCCTCTTTTTTTGGTTGCTGTTAGCTGTGCTGATATTGGTTTCTCTTACCTTTTGACACAGCATAAGACAATTGACAGTG</genome_strand>
        <mrna_strand>AAAAACAGAGATGAAGATCACAGCTTTGATGGTGTTGAAATGCAATCCAGAAGGTTCGGATCCTGTGATCTTAGCAAACGCTTCTGATGTTAACCATTTTGGGTATTTTCAGAGATCCAGCGTTAAGGAATTTATCGTTTTTGTGGGTCGAACTGTTGCTAAAAGGAACCCACCTGGACAACGACAATCTGTTCAGCATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAAGGTGCATTCATACAATCGAAATGGTTTATGTGCTTTGGGCTTCATGGATGATCACTATCCAGTTCGAAGTGCATTTTCACTGCTCAACCAG............................................................................................GTTTTGGATGAGTATCTGAAGAATTTTGGTGAGTCATGGAAGACGGCTCAATGCGACAATGCTCAACCATGGCCTTATCTGAATGAAGCTCTAGCCAAATTTCAG...................................................................................................................GATCCTGCTGAGGCCGATAAGCTGTTCAAAATTCAACGAGAGTTGGATGAAACAAAAATTATTCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAAGACAATTGACAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E243148" ref_strand="+" ref_description="SGN-E243148 	[cLEE-2-I12]">
      <seq>ttagagagaaaaacagagatgaagatcacagctttgatggtgttgaaatgcaatccagaaggttcggatcctgtgatcttagcaaacgcttctgatgttaaccattttgggtattttcagagatccagcgttaaggaatttatcgtttttgtgggtcgaactgttgctaaaaggaacccacctggacaacgacaatctgttcagcatgaagaatacaaggtgcattcatacaatcgaaatggtttatgtgctttgggcttcatggatgatcactatccagttcgaagtgcattttcactgctcaaccaggttttggatgagtatctgaagaattttggtgagtcatggaagacggctcaatgcgacaatgctcaaccatggccttatctgaatgaagctctagccaaatttcaggatcctgctgaggccgataagctgttcaaaattcaacgagagttggatgaaacaaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="65884" stop="63710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65584" g_stop="65374" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65373" i_stop="64480" i_length="894">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64479" g_stop="64382" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="309" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64381" i_stop="64290" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64289" g_stop="64185" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="414" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64184" i_stop="64070" i_length="115">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64069" g_stop="64010" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="474" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E243148" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65584" e_stop="65374"/>
          <exon e_start="64479" e_stop="64382"/>
          <exon e_start="64289" e_stop="64185"/>
          <exon e_start="64069" e_stop="64010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAGAGAAAAACAGAGATGAAGATCACAGCTTTGATGGTGTTGAAATGCAATCCAGAAGGTTCGGATCCTGTGATCTTAGCAAACGCTTCTGATGTTAACCATTTTGGGTATTTTCAGAGATCCAGCGTTAAGGAATTTATCGTTTTTGTGGGTCGAACTGTTGCTAAAAGGAACCCACCTGGACAACGACAATCTGTTCAGCATGAAGGTTTGATTTTTCCAACACCCTTTTGGTTGATTTGGTTATGGGGTTGTCTTATCTTGGTTTTGGGGAATCAAATATGTTGTTTGGTTTTGGTGGAATTGTAGATGTCTTGTGGATTGATGATTTTTTTGTTTTTTATTGGATGTTTGGATTTGTGATATTAGGTAGGTTGCAGCTCAATTTGCTGTTTCTATTGGTAAAGTGTATAGATGGATGAGTAATGTTGCAAAGTTAGACAAAAAAAGTAGGATTTCTTCCCATCTGTTTTAGCTTTGTAGATAATTGAATATAGTTAGCTGGTACCTATGGCTGGAGGGAGGTGGCAGGTACCTGTATTCAAGGTGCGTGCAAGTGAGCATAGACACCGATCGTTATGAAAAAAGATGCAAGCTTGTGGTCCTATAGGTGCTCCTGATGCTTTGAGTCTTGCATTTTGTGATTTTCTGTTTTCATTTCTCTTTTTCTTTTTTTTGTGTTTTGGGGATGGTTTTGCACAAAAGTTTATCAATAACCTCAAGGTACATGTTACCCTACCCAGAAGCCACTTTTTTGAACTACACGGGGTATGTTGTCCTTGTACAAAAGTAGAAGGATGAATGAAGTGTTGACTAGCTTGGTTGGGAAAATTGTTATGTTTAACGAATTGATCTTTTTCAGTTATATTTCTTGAAGTCTTCACATGCTTACACAAGTAATGTTAATCGGTGTTCTTGATATATATCAACTAGTGTAGGATATAAAAATTTGGTGGATTGGTTCTCAATCACAGCCTCTAGCACAAAGTAGTGATTTTTAAGTCGTATTTGATCTATATACCGACCCAATGGTATACTCCTCGATTGTGTTTTGGTCACACATACACCAGTTTTGACTTTTTTTTTTTTTTTTTTACCTTAGAATACAAGGTGCATTCATACAATCGAAATGGTTTATGTGCTTTGGGCTTCATGGATGATCACTATCCAGTTCGAAGTGCATTTTCACTGCTCAACCAGGTATAGGCTCTTTATTATAGATATTCATCTTTGAGAGGAGAAACTCTATATATGGAGAAATCAAATTATGGATCTGCATCTCATTTTTCCAGGTTTTGGATGAGTATCTGAAGAATTTTGGTGAGTCATGGAAGACGGCTCAATGCGACAATGCTCAACCATGGCCTTATCTGAATGAAGCTCTAGCCAAATTTCAGGTTCCCCTTCTGTTTTTGTTTTCTGGGTGATGATGGAATTTCATTTTCAATCAAATTCTTCCCACTTTCATCTTAAAACAATTGACGTTTGAGCTGATCATGTTGACCCCTACAGGATCCTGCTGAGGCCGATAAGCTGTTCAAAATTCAACGAGAGTTGGATGAAACAAAAATT</genome_strand>
        <mrna_strand>TTAGAGAGAAAAACAGAGATGAAGATCACAGCTTTGATGGTGTTGAAATGCAATCCAGAAGGTTCGGATCCTGTGATCTTAGCAAACGCTTCTGATGTTAACCATTTTGGGTATTTTCAGAGATCCAGCGTTAAGGAATTTATCGTTTTTGTGGGTCGAACTGTTGCTAAAAGGAACCCACCTGGACAACGACAATCTGTTCAGCATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAAGGTGCATTCATACAATCGAAATGGTTTATGTGCTTTGGGCTTCATGGATGATCACTATCCAGTTCGAAGTGCATTTTCACTGCTCAACCAG............................................................................................GTTTTGGATGAGTATCTGAAGAATTTTGGTGAGTCATGGAAGACGGCTCAATGCGACAATGCTCAACCATGGCCTTATCTGAATGAAGCTCTAGCCAAATTTCAG...................................................................................................................GATCCTGCTGAGGCCGATAAGCTGTTCAAAATTCAACGAGAGTTGGATGAAACAAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E276326" ref_strand="+" ref_description="SGN-E276326 	[cLEN-21-D12]">
      <seq>ctctctctctcttttttttcctttttcttattcttattccttctccattaaataatgaatagcaataaaataaaataaaataaatagtaataaaattcaacacatcgcgtaatctgaagaagaatcagttctattccttcgaaggcggccatagaagagaggaaaaaaaaaattctttgaaatttattttggtgtttttggataattttttgaagaagtttgagaggtttagagagaaaaacagagatgaagatcacagctttgatggtgttgaaatgcaatccagaaggttcggatcctgtgatcttagcaaacgcttctgatgttaaccattttgggtattttcagagatccagcgttaaggaatttatcgtttttgtgggtcgaactgttgctaaaaggaacccacctggacaacgacaatctgttcagcatgaagaatacaaggtgcattcatacaatcgaaatggtttatgtgctttgggcttcatggatgatcactatccagttcgaagtgcattttcactgctcaaccaggttttggatgagtatctgaagaattttggtgagtcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="66111" stop="63950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65811" g_stop="65374" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65373" i_stop="64480" i_length="894">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64479" g_stop="64382" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="537" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64381" i_stop="64290" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64289" g_stop="64250" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="577" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E276326" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65811" e_stop="65374"/>
          <exon e_start="64479" e_stop="64382"/>
          <exon e_start="64289" e_stop="64250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTCTTTTTTTTCCTTTTTCTTATTCTTATTCCTTCTCCATTAAATAATTAATAGCAATAAAATAAAATAAAATAAATAGTAATAAAATTCAACACATCGCGTAATCTGAAGAAGAATCAGTTCTATTCCTTCGAAGGCGGCCATAGAAGAGAGG-AAAAAAAAATTCTTTGAAATTTATTTTGGTGTTTTTGGATAATTTTTTGAAGAAGTTTGAGAGGTTTAGAGAGAAAAACAGAGATGAAGATCACAGCTTTGATGGTGTTGAAATGCAATCCAGAAGGTTCGGATCCTGTGATCTTAGCAAACGCTTCTGATGTTAACCATTTTGGGTATTTTCAGAGATCCAGCGTTAAGGAATTTATCGTTTTTGTGGGTCGAACTGTTGCTAAAAGGAACCCACCTGGACAACGACAATCTGTTCAGCATGAAGGTTTGATTTTTCCAACACCCTTTTGGTTGATTTGGTTATGGGGTTGTCTTATCTTGGTTTTGGGGAATCAAATATGTTGTTTGGTTTTGGTGGAATTGTAGATGTCTTGTGGATTGATGATTTTTTTGTTTTTTATTGGATGTTTGGATTTGTGATATTAGGTAGGTTGCAGCTCAATTTGCTGTTTCTATTGGTAAAGTGTATAGATGGATGAGTAATGTTGCAAAGTTAGACAAAAAAAGTAGGATTTCTTCCCATCTGTTTTAGCTTTGTAGATAATTGAATATAGTTAGCTGGTACCTATGGCTGGAGGGAGGTGGCAGGTACCTGTATTCAAGGTGCGTGCAAGTGAGCATAGACACCGATCGTTATGAAAAAAGATGCAAGCTTGTGGTCCTATAGGTGCTCCTGATGCTTTGAGTCTTGCATTTTGTGATTTTCTGTTTTCATTTCTCTTTTTCTTTTTTTTGTGTTTTGGGGATGGTTTTGCACAAAAGTTTATCAATAACCTCAAGGTACATGTTACCCTACCCAGAAGCCACTTTTTTGAACTACACGGGGTATGTTGTCCTTGTACAAAAGTAGAAGGATGAATGAAGTGTTGACTAGCTTGGTTGGGAAAATTGTTATGTTTAACGAATTGATCTTTTTCAGTTATATTTCTTGAAGTCTTCACATGCTTACACAAGTAATGTTAATCGGTGTTCTTGATATATATCAACTAGTGTAGGATATAAAAATTTGGTGGATTGGTTCTCAATCACAGCCTCTAGCACAAAGTAGTGATTTTTAAGTCGTATTTGATCTATATACCGACCCAATGGTATACTCCTCGATTGTGTTTTGGTCACACATACACCAGTTTTGACTTTTTTTTTTTTTTTTTTACCTTAGAATACAAGGTGCATTCATACAATCGAAATGGTTTATGTGCTTTGGGCTTCATGGATGATCACTATCCAGTTCGAAGTGCATTTTCACTGCTCAACCAGGTATAGGCTCTTTATTATAGATATTCATCTTTGAGAGGAGAAACTCTATATATGGAGAAATCAAATTATGGATCTGCATCTCATTTTTCCAGGTTTTGGATGAGTATCTGAAGAATTTTGGTGAGTCATGGA</genome_strand>
        <mrna_strand>CTCTCTCTCTCTTTTTTTTCCTTTTTCTTATTCTTATTCCTTCTCCATTAAATAATGAATAGCAATAAAATAAAATAAAATAAATAGTAATAAAATTCAACACATCGCGTAATCTGAAGAAGAATCAGTTCTATTCCTTCGAAGGCGGCCATAGAAGAGAGGAAAAAAAAAATTCTTTGAAATTTATTTTGGTGTTTTTGGATAATTTTTTGAAGAAGTTTGAGAGGTTTAGAGAGAAAAACAGAGATGAAGATCACAGCTTTGATGGTGTTGAAATGCAATCCAGAAGGTTCGGATCCTGTGATCTTAGCAAACGCTTCTGATGTTAACCATTTTGGGTATTTTCAGAGATCCAGCGTTAAGGAATTTATCGTTTTTGTGGGTCGAACTGTTGCTAAAAGGAACCCACCTGGACAACGACAATCTGTTCAGCATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAAGGTGCATTCATACAATCGAAATGGTTTATGTGCTTTGGGCTTCATGGATGATCACTATCCAGTTCGAAGTGCATTTTCACTGCTCAACCAG............................................................................................GTTTTGGATGAGTATCTGAAGAATTTTGGTGAGTCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E280767" ref_strand="+" ref_description="SGN-E280767 	[cLEL-6-A16]">
      <seq>gcacgagattccttcgaaggcggccatagaagagaggaaaaaaaaaattctttgaaatttattttggtgtttttggataatctctttgaagaagtttgagaggtttagagagaaaaacagagatgaagatcacagctttgatggtgttgaaatgcaatccagaaggttcggatcctgtgatcttagcaaacgcttctgatgttaaccattttgggtattttcagagatctagcgttaaggaatttatcgtttttgtgggtcgaactgttgctaaaaggaacccacctggacaacgacaatctgttcagcatgaagaatacaaggtgcattcatacaatcgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="65979" stop="64152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65687" g_stop="65374" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65373" i_stop="64480" i_length="894">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64479" g_stop="64452" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="343" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E280767" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65687" e_stop="65374"/>
          <exon e_start="64479" e_stop="64452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTCTATTCCTTCGAAGGCGGCCATAGAAGAGAGG-AAAAAAAAATTCTTTGAAATTTATTTTGGTGTTTTTGGATAAT-TTTTTGAAGAAGTTTGAGAGGTTTAGAGAGAAAAACAGAGATGAAGATCACAGCTTTGATGGTGTTGAAATGCAATCCAGAAGGTTCGGATCCTGTGATCTTAGCAAACGCTTCTGATGTTAACCATTTTGGGTATTTTCAGAGATCCAGCGTTAAGGAATTTATCGTTTTTGTGGGTCGAACTGTTGCTAAAAGGAACCCACCTGGACAACGACAATCTGTTCAGCATGAAGGTTTGATTTTTCCAACACCCTTTTGGTTGATTTGGTTATGGGGTTGTCTTATCTTGGTTTTGGGGAATCAAATATGTTGTTTGGTTTTGGTGGAATTGTAGATGTCTTGTGGATTGATGATTTTTTTGTTTTTTATTGGATGTTTGGATTTGTGATATTAGGTAGGTTGCAGCTCAATTTGCTGTTTCTATTGGTAAAGTGTATAGATGGATGAGTAATGTTGCAAAGTTAGACAAAAAAAGTAGGATTTCTTCCCATCTGTTTTAGCTTTGTAGATAATTGAATATAGTTAGCTGGTACCTATGGCTGGAGGGAGGTGGCAGGTACCTGTATTCAAGGTGCGTGCAAGTGAGCATAGACACCGATCGTTATGAAAAAAGATGCAAGCTTGTGGTCCTATAGGTGCTCCTGATGCTTTGAGTCTTGCATTTTGTGATTTTCTGTTTTCATTTCTCTTTTTCTTTTTTTTGTGTTTTGGGGATGGTTTTGCACAAAAGTTTATCAATAACCTCAAGGTACATGTTACCCTACCCAGAAGCCACTTTTTTGAACTACACGGGGTATGTTGTCCTTGTACAAAAGTAGAAGGATGAATGAAGTGTTGACTAGCTTGGTTGGGAAAATTGTTATGTTTAACGAATTGATCTTTTTCAGTTATATTTCTTGAAGTCTTCACATGCTTACACAAGTAATGTTAATCGGTGTTCTTGATATATATCAACTAGTGTAGGATATAAAAATTTGGTGGATTGGTTCTCAATCACAGCCTCTAGCACAAAGTAGTGATTTTTAAGTCGTATTTGATCTATATACCGACCCAATGGTATACTCCTCGATTGTGTTTTGGTCACACATACACCAGTTTTGACTTTTTTTTTTTTTTTTTTACCTTAGAATACAAGGTGCATTCATACAATCGAAA</genome_strand>
        <mrna_strand>GCA-CGAGATTCCTTCGAAGGCGGCCATAGAAGAGAGGAAAAAAAAAATTCTTTGAAATTTATTTTGGTGTTTTTGGATAATCTCTTTGAAGAAGTTTGAGAGGTTTAGAGAGAAAAACAGAGATGAAGATCACAGCTTTGATGGTGTTGAAATGCAATCCAGAAGGTTCGGATCCTGTGATCTTAGCAAACGCTTCTGATGTTAACCATTTTGGGTATTTTCAGAGATCTAGCGTTAAGGAATTTATCGTTTTTGTGGGTCGAACTGTTGCTAAAAGGAACCCACCTGGACAACGACAATCTGTTCAGCATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACAAGGTGCATTCATACAATCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E313060" ref_strand="+" ref_description="SGN-E313060 	[cTOA-14-D13]">
      <seq>gcaggtacctgtattcaaggtgcgtgcaagtgagcatagacaccgatcgttatgaaaaaagatgcaagcttgtggtcctataggtgctcctgatgctttgagtcttgcattttgtgattttctgttttcatttctctttttcttttttttgtgttttggggatggttttgcacaaaagtttatcaataacctcaaggtacatgttaccctacccagaagccacttttttgaactacacggggtatgttgtccttgtacaaaagtagaaggatgaatgaagtgttgactagcttggttgggaaaattgttatgtttaacgaattgatctttttcagttatatttcttgaagtcttcacatgcttacacaagtaatgttaatcggtgttcttgatatatatcaactagtgtaggatataaaaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="65354" stop="64330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65054" g_stop="64630" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E313060" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65054" e_stop="64630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGTACCTGTATTCAAGGTGCGTGCAAGTGAGCATAGACACCGATCGTTATGAAAAAAGATGCAAGCTTGTGGTCCTATAGGTGCTCCTGATGCTTTGAGTCTTGCATTTTGTGATTTTCTGTTTTCATTTCTCTTTTTCTTTTTTTTGTGTTTTGGGGATGGTTTTGCACAAAAGTTTATCAATAACCTCAAGGTACATGTTACCCTACCCAGAAGCCACTTTTTTGAACTACACGGGGTATGTTGTCCTTGTACAAAAGTAGAAGGATGAATGAAGTGTTGACTAGCTTGGTTGGGAAAATTGTTATGTTTAACGAATTGATCTTTTTCAGTTATATTTCTTGAAGTCTTCACATGCTTACACAAGTAATGTTAATCGGTGTTCTTGATATATATCAACTAGTGTAGGATATAAAAATTTG</genome_strand>
        <mrna_strand>GCAGGTACCTGTATTCAAGGTGCGTGCAAGTGAGCATAGACACCGATCGTTATGAAAAAAGATGCAAGCTTGTGGTCCTATAGGTGCTCCTGATGCTTTGAGTCTTGCATTTTGTGATTTTCTGTTTTCATTTCTCTTTTTCTTTTTTTTGTGTTTTGGGGATGGTTTTGCACAAAAGTTTATCAATAACCTCAAGGTACATGTTACCCTACCCAGAAGCCACTTTTTTGAACTACACGGGGTATGTTGTCCTTGTACAAAAGTAGAAGGATGAATGAAGTGTTGACTAGCTTGGTTGGGAAAATTGTTATGTTTAACGAATTGATCTTTTTCAGTTATATTTCTTGAAGTCTTCACATGCTTACACAAGTAATGTTAATCGGTGTTCTTGATATATATCAACTAGTGTAGGATATAAAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E369009" ref_strand="+" ref_description="SGN-E369009 	[TUS-25-D13]">
      <seq>gagctcttcgatttctcttcaattcaggtattcttttttaaatttctcttcgatttcaattcataaaccctaataatggaaccccaaatgcgcaatttcccagtttttatacaatcgccagagcttcagatccctacccatgtcctaaatattgaaaaccctaatcctaatttcactttgcaagacctcaaatcatgtttgcttgaaaaaacccagaaatcattggctgcaattaaggattctgtctatcttacttttgatggtcgacccattaaggattcaactctattatatggttctgggattagcccgttttccactttggtactacgtttccgccttcgtggtggtggtggtgatggaggtgccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="71917" stop="72887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72217" g_stop="72587" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E369009" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72217" e_stop="72587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTCTTCGATTTCTCTTCAATTCAGGTATTCTTTTTTAAATTTCTCTTCGATTTCAATTCATAAACCCTAATAATGGAACCCCAAATGCGCAATTTCCCAGTTTTTATACAATCGCCAGAGCTTCAGATCCCTACTCATGTCCTAAATATTGAAAACCCTAATCCTAATTTCACTTTGCAAGACCTCAAATCATGTTTGCTTGAAAAAACCCAGAAATCATTGGCTGCAATTAAGGATTCTGTCTATCTTACTTTTGATGGTCGACCCATTAAGGATTCAACTCTATTATATGGTTCTGGGATTAGCCCGTTTTCCACTTTGGTACTACGTTTCCGCCTTCGTGGTGGTGGTGGTGATGGAGGTGCCAC</genome_strand>
        <mrna_strand>GAGCTCTTCGATTTCTCTTCAATTCAGGTATTCTTTTTTAAATTTCTCTTCGATTTCAATTCATAAACCCTAATAATGGAACCCCAAATGCGCAATTTCCCAGTTTTTATACAATCGCCAGAGCTTCAGATCCCTACCCATGTCCTAAATATTGAAAACCCTAATCCTAATTTCACTTTGCAAGACCTCAAATCATGTTTGCTTGAAAAAACCCAGAAATCATTGGCTGCAATTAAGGATTCTGTCTATCTTACTTTTGATGGTCGACCCATTAAGGATTCAACTCTATTATATGGTTCTGGGATTAGCCCGTTTTCCACTTTGGTACTACGTTTCCGCCTTCGTGGTGGTGGTGGTGATGGAGGTGCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E272580" ref_strand="+" ref_description="SGN-E272580 	[cLEM-21-B15]">
      <seq>agctcttcgatttctcttcaattcaggtattcttttttaaatttctcttcgatttcaattcataaaccctaataatggaaccccaaatgcgcaatttcccagtttttatacaatcgccagagcttcagatccctactcatgtcctaaatattgaaaaccctaatcctaatttcactttgcaagacctcaaatcatgtttgcttgaaaaaacccagaaatcattggctgcaattaaggattctgtctatcttacttttgatggtcgacccattaaggattcaactctattatatggttctgggattagcccgttttccactttggtactacgtttccgccttcgtggtggtggtggtgatggaggtgccacgggagcggagtcccgagactgttatctcaagatgtatgctgttaagaaaccggataaaattgatccaaatgagattaggttgtctagatggttgaattgtgcgttgtcgaacgagtcattaaagcatcctgttgttattgataagcttgggaatttgttcaataaggagacgttagttgaggctttattgaagaaaaggctgcctaagcagtttgggtatataaagggattgaaagatatgattccggttgagctatcggtgattccgggcaaagaggatagagggcttggtgatggtgaagggactgggtttcagtgcccggtaacagggttggagttcaatgggaagtacaaagtctttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="71918" stop="73252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72218" g_stop="72952" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E272580" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72218" e_stop="72952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTTCGATTTCTCTTCAATTCAGGTATTCTTTTTTAAATTTCTCTTCGATTTCAATTCATAAACCCTAATAATGGAACCCCAAATGCGCAATTTCCCAGTTTTTATACAATCGCCAGAGCTTCAGATCCCTACTCATGTCCTAAATATTGAAAACCCTAATCCTAATTTCACTTTGCAAGACCTCAAATCATGTTTGCTTGAAAAAACCCAGAAATCATTGGCTGCAATTAAGGATTCTGTCTATCTTACTTTTGATGGTCGACCCATTAAGGATTCAACTCTATTATATGGTTCTGGGATTAGCCCGTTTTCCACTTTGGTACTACGTTTCCGCCTTCGTGGTGGTGGTGGTGATGGAGGTGCCACGGGAGCGGAGTCCCGAGACTGTTATCTCAAGATGTATGCTGTTAAGAAACCGGATAAAATTGATCCAAATGAGATTAGGTTGTCTAGATGGTTGAATTGTGCGTTGTCGAACGAGTCATTAAAGCATCCTGTTGTTATTGATAAGCTTGGGAATTTGTTCAATAAGGAGACGTTAGTTGAGGCTTTATTGAAGAAAAGGCTGCCTAAGCAGTTTGGGTATATAAAGGGATTGAAAGATATGATTCCGGTTGAGCTATCGGTGATTCCGGGCAAAGAGGATAGAGGGCTTGGTGATGGTGAAGGGACTGGGTTTCAGTGCCCGGTAACAGGGTTGGAGTTCAATGGGAAGTACAAGTTCTTTGCTT</genome_strand>
        <mrna_strand>AGCTCTTCGATTTCTCTTCAATTCAGGTATTCTTTTTTAAATTTCTCTTCGATTTCAATTCATAAACCCTAATAATGGAACCCCAAATGCGCAATTTCCCAGTTTTTATACAATCGCCAGAGCTTCAGATCCCTACTCATGTCCTAAATATTGAAAACCCTAATCCTAATTTCACTTTGCAAGACCTCAAATCATGTTTGCTTGAAAAAACCCAGAAATCATTGGCTGCAATTAAGGATTCTGTCTATCTTACTTTTGATGGTCGACCCATTAAGGATTCAACTCTATTATATGGTTCTGGGATTAGCCCGTTTTCCACTTTGGTACTACGTTTCCGCCTTCGTGGTGGTGGTGGTGATGGAGGTGCCACGGGAGCGGAGTCCCGAGACTGTTATCTCAAGATGTATGCTGTTAAGAAACCGGATAAAATTGATCCAAATGAGATTAGGTTGTCTAGATGGTTGAATTGTGCGTTGTCGAACGAGTCATTAAAGCATCCTGTTGTTATTGATAAGCTTGGGAATTTGTTCAATAAGGAGACGTTAGTTGAGGCTTTATTGAAGAAAAGGCTGCCTAAGCAGTTTGGGTATATAAAGGGATTGAAAGATATGATTCCGGTTGAGCTATCGGTGATTCCGGGCAAAGAGGATAGAGGGCTTGGTGATGGTGAAGGGACTGGGTTTCAGTGCCCGGTAACAGGGTTGGAGTTCAATGGGAAGTACAAAGTCTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E328277" ref_strand="+" ref_description="SGN-E328277 	[cTOC-21-D16]">
      <seq>ttcgatttctcttcaattcaggtattcttttttaaatttctcttcgatttcaattcataaaccctaataatggaaccccaaatgcgcaatttcccagtttttatacaatcgccagagcttcagatccctactcatgtcctaaatattgaaaaccctaatcctaatttcactttgcaagacctcaaatcatgtttgcttgaaaaaacccagaaatcattggctgcaattaaggattctgtctatcttacttttgatggtcgacccattaaggattcaactctattatatggttctgggattagcccgttttccactttggtactacgtttccgccttcgtggtggtggtggtgatggaggtgccacgggagcggagtcccgagactgttatctcaagatgtatgctgttaagaaaccggataaaattgatccaaatgagattaggttgtctagatggttgaattgtgcgttgtcgaacgagtcattaaagcatcctgttgttattgataagcttgggaatttgttcaataaggagacgttagttgaggctttattgaagaaaaggctgcctaagcagtttgggtatataaaggggatgaaagatatgattccggttgagctatcggtgattccgggcaaagaggatagagggcttggtgatggtgaagggactgggtttcagtgcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="71923" stop="73209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72223" g_stop="72909" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E328277" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72223" e_stop="72909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGATTTCTCTTCAATTCAGGTATTCTTTTTTAAATTTCTCTTCGATTTCAATTCATAAACCCTAATAATGGAACCCCAAATGCGCAATTTCCCAGTTTTTATACAATCGCCAGAGCTTCAGATCCCTACTCATGTCCTAAATATTGAAAACCCTAATCCTAATTTCACTTTGCAAGACCTCAAATCATGTTTGCTTGAAAAAACCCAGAAATCATTGGCTGCAATTAAGGATTCTGTCTATCTTACTTTTGATGGTCGACCCATTAAGGATTCAACTCTATTATATGGTTCTGGGATTAGCCCGTTTTCCACTTTGGTACTACGTTTCCGCCTTCGTGGTGGTGGTGGTGATGGAGGTGCCACGGGAGCGGAGTCCCGAGACTGTTATCTCAAGATGTATGCTGTTAAGAAACCGGATAAAATTGATCCAAATGAGATTAGGTTGTCTAGATGGTTGAATTGTGCGTTGTCGAACGAGTCATTAAAGCATCCTGTTGTTATTGATAAGCTTGGGAATTTGTTCAATAAGGAGACGTTAGTTGAGGCTTTATTGAAGAAAAGGCTGCCTAAGCAGTTTGGGTATATAAAGGGATTGAAAGATATGATTCCGGTTGAGCTATCGGTGATTCCGGGCAAAGAGGATAGAGGGCTTGGTGATGGTGAAGGGACTGGGTTTCAGTGCCCG</genome_strand>
        <mrna_strand>TTCGATTTCTCTTCAATTCAGGTATTCTTTTTTAAATTTCTCTTCGATTTCAATTCATAAACCCTAATAATGGAACCCCAAATGCGCAATTTCCCAGTTTTTATACAATCGCCAGAGCTTCAGATCCCTACTCATGTCCTAAATATTGAAAACCCTAATCCTAATTTCACTTTGCAAGACCTCAAATCATGTTTGCTTGAAAAAACCCAGAAATCATTGGCTGCAATTAAGGATTCTGTCTATCTTACTTTTGATGGTCGACCCATTAAGGATTCAACTCTATTATATGGTTCTGGGATTAGCCCGTTTTCCACTTTGGTACTACGTTTCCGCCTTCGTGGTGGTGGTGGTGATGGAGGTGCCACGGGAGCGGAGTCCCGAGACTGTTATCTCAAGATGTATGCTGTTAAGAAACCGGATAAAATTGATCCAAATGAGATTAGGTTGTCTAGATGGTTGAATTGTGCGTTGTCGAACGAGTCATTAAAGCATCCTGTTGTTATTGATAAGCTTGGGAATTTGTTCAATAAGGAGACGTTAGTTGAGGCTTTATTGAAGAAAAGGCTGCCTAAGCAGTTTGGGTATATAAAGGGGATGAAAGATATGATTCCGGTTGAGCTATCGGTGATTCCGGGCAAAGAGGATAGAGGGCTTGGTGATGGTGAAGGGACTGGGTTTCAGTGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E295764" ref_strand="+" ref_description="SGN-E295764 	[cLET-25-C4]">
      <seq>tcgatttctcttcaattcaggtattcttttttaaatttctcttcgatttcaattcataaaccctaataatggaaccccaaatgcgcaatttcccagtttttatacaatcgccagagcttcagatccctactcatgtcctaaatattgaaaaccctaatcctaatttcactttgcaagacctcaaatcatgtttgcttgaaaaaacccagaaatcattggctgcaattaaggattctgtctatcttacttttgatggtcgacccattaaggattcaactctattatatggttctgggattagcccgttttccactgtggtactacgtttccgccttcggggtggtggtggtgatggaggtgccacgggagcggagtcccgagactgttatctcaagatgtatgctgttaagaaaccggataaaattgatccaaatgagattaggttgtctagatggttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="71924" stop="72983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72224" g_stop="72683" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E295764" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72224" e_stop="72683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTTCTCTTCAATTCAGGTATTCTTTTTTAAATTTCTCTTCGATTTCAATTCATAAACCCTAATAATGGAACCCCAAATGCGCAATTTCCCAGTTTTTATACAATCGCCAGAGCTTCAGATCCCTACTCATGTCCTAAATATTGAAAACCCTAATCCTAATTTCACTTTGCAAGACCTCAAATCATGTTTGCTTGAAAAAACCCAGAAATCATTGGCTGCAATTAAGGATTCTGTCTATCTTACTTTTGATGGTCGACCCATTAAGGATTCAACTCTATTATATGGTTCTGGGATTAGCCCGTTTTCCACTTTGGTACTACGTTTCCGCCTTCGTGGTGGTGGTGGTGATGGAGGTGCCACGGGAGCGGAGTCCCGAGACTGTTATCTCAAGATGTATGCTGTTAAGAAACCGGATAAAATTGATCCAAATGAGATTAGGTTGTCTAGATGGTTGAA</genome_strand>
        <mrna_strand>TCGATTTCTCTTCAATTCAGGTATTCTTTTTTAAATTTCTCTTCGATTTCAATTCATAAACCCTAATAATGGAACCCCAAATGCGCAATTTCCCAGTTTTTATACAATCGCCAGAGCTTCAGATCCCTACTCATGTCCTAAATATTGAAAACCCTAATCCTAATTTCACTTTGCAAGACCTCAAATCATGTTTGCTTGAAAAAACCCAGAAATCATTGGCTGCAATTAAGGATTCTGTCTATCTTACTTTTGATGGTCGACCCATTAAGGATTCAACTCTATTATATGGTTCTGGGATTAGCCCGTTTTCCACTGTGGTACTACGTTTCCGCCTTCGGGGTGGTGGTGGTGATGGAGGTGCCACGGGAGCGGAGTCCCGAGACTGTTATCTCAAGATGTATGCTGTTAAGAAACCGGATAAAATTGATCCAAATGAGATTAGGTTGTCTAGATGGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E294971" ref_strand="+" ref_description="SGN-E294971 	[cLET-17-B22]">
      <seq>cgattactcttgaattcagggattcttttttaaatctctcttcgattgcaattcatagaccctaataatggagccccaaatgcgcaatttcccagtttttatacaattgccggagcttcagatccctactcatgtcctaaatattgaaaaccctaatcctaatttcactttgcaagacctcaaatcatgtttgcttgaaaaaacccagaaatcattggctgcaattaaggattctgtctatcttacttttgatggtcgacccattaaggattcaactctattatatggttctgggattagcccgttttccactttggtactacgtttccgccttcgtggtggtggtggtgatggaggtgccacgggagcggagtcccgagactgttatctcaagatgtatgctgttaagaaaccggataaaattgatccaaatgagattaggttgtctagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="71925" stop="72976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72225" g_stop="72676" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E294971" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72225" e_stop="72676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTCTCTTCAATTCAGGTATTCTTTTTTAAATTTCTCTTCGATTTCAATTCATAAACCCTAATAATGGAACCCCAAATGCGCAATTTCCCAGTTTTTATACAATCGCCAGAGCTTCAGATCCCTACTCATGTCCTAAATATTGAAAACCCTAATCCTAATTTCACTTTGCAAGACCTCAAATCATGTTTGCTTGAAAAAACCCAGAAATCATTGGCTGCAATTAAGGATTCTGTCTATCTTACTTTTGATGGTCGACCCATTAAGGATTCAACTCTATTATATGGTTCTGGGATTAGCCCGTTTTCCACTTTGGTACTACGTTTCCGCCTTCGTGGTGGTGGTGGTGATGGAGGTGCCACGGGAGCGGAGTCCCGAGACTGTTATCTCAAGATGTATGCTGTTAAGAAACCGGATAAAATTGATCCAAATGAGATTAGGTTGTCTAGAT</genome_strand>
        <mrna_strand>CGATTACTCTTGAATTCAGGGATTCTTTTTTAAATCTCTCTTCGATTGCAATTCATAGACCCTAATAATGGAGCCCCAAATGCGCAATTTCCCAGTTTTTATACAATTGCCGGAGCTTCAGATCCCTACTCATGTCCTAAATATTGAAAACCCTAATCCTAATTTCACTTTGCAAGACCTCAAATCATGTTTGCTTGAAAAAACCCAGAAATCATTGGCTGCAATTAAGGATTCTGTCTATCTTACTTTTGATGGTCGACCCATTAAGGATTCAACTCTATTATATGGTTCTGGGATTAGCCCGTTTTCCACTTTGGTACTACGTTTCCGCCTTCGTGGTGGTGGTGGTGATGGAGGTGCCACGGGAGCGGAGTCCCGAGACTGTTATCTCAAGATGTATGCTGTTAAGAAACCGGATAAAATTGATCCAAATGAGATTAGGTTGTCTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E345814" ref_strand="+" ref_description="SGN-E345814 	[cTOF-18-B2]">
      <seq>tggttctgggattagcccgttttccactttggtactacgtttccgccttcgtggtggtggtggtgatggaggtgccacgggagcggagtcccgagactgttatctcaagatgtatgctgttaagaaaccggataaaattgatccaaatgagattaggttgtctagatggttgaattgtgcgttgtcgaacgagtcattaaagcatcctgttgttattgataagcttgggaatttgttcaataaggagacgttagttgaggctttattgaagaaaaggctgcctaagcagtttgggtatataaagggattgaaagatatgattccggttgagctatcggtgattccgggcaaagaggatagagggcttggtgatggtgaagggactgggtttcagtgcccggtaacagggttggagttcaatgggaagtacaagttctttgctttgaggggttgtgggcatgttttgagtgcaaaagctttgaaggaggtgaaatcctcggcttgtttggtttgccaaaggaggttgtggagagtgacaaaattgtgatcacgggagtgaagaagaggttgcggctttgagggagagaatggangaagaaagggtgaaattgaaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="72210" stop="73428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72510" g_stop="73128" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E345814" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72510" e_stop="73128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTCTGGGATTAGCCCGTTTTCCACTTTGGTACTACGTTTCCGCCTTCGTGGTGGTGGTGGTGATGGAGGTGCCACGGGAGCGGAGTCCCGAGACTGTTATCTCAAGATGTATGCTGTTAAGAAACCGGATAAAATTGATCCAAATGAGATTAGGTTGTCTAGATGGTTGAATTGTGCGTTGTCGAACGAGTCATTAAAGCATCCTGTTGTTATTGATAAGCTTGGGAATTTGTTCAATAAGGAGACGTTAGTTGAGGCTTTATTGAAGAAAAGGCTGCCTAAGCAGTTTGGGTATATAAAGGGATTGAAAGATATGATTCCGGTTGAGCTATCGGTGATTCCGGGCAAAGAGGATAGAGGGCTTGGTGATGGTGAAGGGACTGGGTTTCAGTGCCCGGTAACAGGGTTGGAGTTCAATGGGAAGTACAAGTTCTTTGCTTTGAGGGGTTGTGGGCATGTTTTGAGTGCAAAAGCTTTGAAGGAGGTGAAATCCTCGGCTTGTTTGGTTTGCCACAAGGAGGTTGTGGAGAGTGACAAAATTGTGATCAACGGGAGTGAAGAAGAGGTTGCGGCTTTGAGGGAGAGAATGGAGGAAGAAAGGGTGAAATTGAAGGAT</genome_strand>
        <mrna_strand>TGGTTCTGGGATTAGCCCGTTTTCCACTTTGGTACTACGTTTCCGCCTTCGTGGTGGTGGTGGTGATGGAGGTGCCACGGGAGCGGAGTCCCGAGACTGTTATCTCAAGATGTATGCTGTTAAGAAACCGGATAAAATTGATCCAAATGAGATTAGGTTGTCTAGATGGTTGAATTGTGCGTTGTCGAACGAGTCATTAAAGCATCCTGTTGTTATTGATAAGCTTGGGAATTTGTTCAATAAGGAGACGTTAGTTGAGGCTTTATTGAAGAAAAGGCTGCCTAAGCAGTTTGGGTATATAAAGGGATTGAAAGATATGATTCCGGTTGAGCTATCGGTGATTCCGGGCAAAGAGGATAGAGGGCTTGGTGATGGTGAAGGGACTGGGTTTCAGTGCCCGGTAACAGGGTTGGAGTTCAATGGGAAGTACAAGTTCTTTGCTTTGAGGGGTTGTGGGCATGTTTTGAGTGCAAAAGCTTTGAAGGAGGTGAAATCCTCGGCTTGTTTGGTTTGCCA-AAGGAGGTTGTGGAGAGTGACAAAATTGTGATC-ACGGGAGTGAAGAAGAGGTTGCGGCTTTGAGGGAGAGAATGGANGAAGAAAGGGTGAAATTGAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E553802" ref_strand="+" ref_description="SGN-E553802 	[cTSC-2-E19]">
      <seq>ctagatggttgaattgtgcgttgtcgaacgagtcattaaagcatcctgttgttattgataagcttgggaatttgttcaataaggagacgttagttgaggctttattgaagaaaaggctgcctaagcagtttgggtatataaagggattgaaagatatgattccggttgagctatcggtgattccgggcaaagaggatagagggcttggtgatggtgaagggactgggtttcagtgcccggtaacagggttggagttcaatgggaagtacaagttctttgctttgaggggttgtgggcatgttttgagtgcaaaagctttgaaggaggtgaaatcctcggcttgtttggtttgccacaaggaggttgtggagagtgacaaaattgtgatcaacgggagtgaagaagaggttgcggctttgagggagagaatggaggaagaaagggtgaaattgaaggatagtaagaaggtgaagaaggggaggaatgtggatgtagctgtgaatggtgaagaggtcnttggggcatcncgcttgagcggaatgaaacatgggattgaggataagctggtaggcaaggatgcaaggaaagtggaagggaatggtaaaattggcattaaaagtaagattgaagttaaggatgtgaagaatagttcgagcaacgggtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="72371" stop="73636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72671" g_stop="73336" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E553802" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72671" e_stop="73336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGATGGTTGAATTGTGCGTTGTCGAACGAGTCATTAAAGCATCCTGTTGTTATTGATAAGCTTGGGAATTTGTTCAATAAGGAGACGTTAGTTGAGGCTTTATTGAAGAAAAGGCTGCCTAAGCAGTTTGGGTATATAAAGGGATTGAAAGATATGATTCCGGTTGAGCTATCGGTGATTCCGGGCAAAGAGGATAGAGGGCTTGGTGATGGTGAAGGGACTGGGTTTCAGTGCCCGGTAACAGGGTTGGAGTTCAATGGGAAGTACAAGTTCTTTGCTTTGAGGGGTTGTGGGCATGTTTTGAGTGCAAAAGCTTTGAAGGAGGTGAAATCCTCGGCTTGTTTGGTTTGCCACAAGGAGGTTGTGGAGAGTGACAAAATTGTGATCAACGGGAGTGAAGAAGAGGTTGCGGCTTTGAGGGAGAGAATGGAGGAAGAAAGGGTGAAATTGAAGGATAGTAAGAAGGTGAAGAAGGGGAGGAATGTGGATGTAGCTGTGAATGGTGAAGAGGTCATTGGGGCATCACGCTTGAGCGGAATGAAACATGGGATTGAGGATAAGCTGGTAGGCAAGGATGCAAGGAAAGTGGAAGGGAATGGTAAAATTGGCATTAAAAGTAAGATTGAAGTTAAGGATGTGAAGAATAGTTCGAGCAACGGGTCTG</genome_strand>
        <mrna_strand>CTAGATGGTTGAATTGTGCGTTGTCGAACGAGTCATTAAAGCATCCTGTTGTTATTGATAAGCTTGGGAATTTGTTCAATAAGGAGACGTTAGTTGAGGCTTTATTGAAGAAAAGGCTGCCTAAGCAGTTTGGGTATATAAAGGGATTGAAAGATATGATTCCGGTTGAGCTATCGGTGATTCCGGGCAAAGAGGATAGAGGGCTTGGTGATGGTGAAGGGACTGGGTTTCAGTGCCCGGTAACAGGGTTGGAGTTCAATGGGAAGTACAAGTTCTTTGCTTTGAGGGGTTGTGGGCATGTTTTGAGTGCAAAAGCTTTGAAGGAGGTGAAATCCTCGGCTTGTTTGGTTTGCCACAAGGAGGTTGTGGAGAGTGACAAAATTGTGATCAACGGGAGTGAAGAAGAGGTTGCGGCTTTGAGGGAGAGAATGGAGGAAGAAAGGGTGAAATTGAAGGATAGTAAGAAGGTGAAGAAGGGGAGGAATGTGGATGTAGCTGTGAATGGTGAAGAGGTCNTTGGGGCATCNCGCTTGAGCGGAATGAAACATGGGATTGAGGATAAGCTGGTAGGCAAGGATGCAAGGAAAGTGGAAGGGAATGGTAAAATTGGCATTAAAAGTAAGATTGAAGTTAAGGATGTGAAGAATAGTTCGAGCAACGGGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E342798" ref_strand="+" ref_description="SGN-E342798 	[cTOF-7-F13]">
      <seq>cgttgtcgaacgagtcattaaagcatcctgttgttattgataagcttgggaatttgttcaataaggagacgttagttgaggctttattgaagaaaaggctgcctaagcagtttgggtatataaagggattgaaagatatgattccggttgagctatcggtgattccgggcaaagaggatagagggcttggtgatggtgaagggactgggtttcagtgcccggtaacagggttggagttcaatgggaagtacaagttctttgctttgaggggttgtgggcatgttttgagtgcaaaagctttgaaggaggtgaaatcctcggcttgtttggtttgccacaaggaggttgtggagagtgacaaaattgtgatcaacgggagtgaagaagaggttgcggctttgagggagagaatggaggaagaaagggtgaaattgaaggatagtaagaaggtgaagaaggggaggaatgtggatgtagctgtgaatggtgaagaggtcattggggcatcacgcttgagcggaatgaaacatgggattgaggataagctggtangcaaggatgcaaggaaagtgggagggaatggtaaaattggcattaaaagtaagattgaagttaaagatgtgaagaatagttcgagcaacgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="72389" stop="73633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72689" g_stop="73333" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E342798" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72689" e_stop="73333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGTCGAACGAGTCATTAAAGCATCCTGTTGTTATTGATAAGCTTGGGAATTTGTTCAATAAGGAGACGTTAGTTGAGGCTTTATTGAAGAAAAGGCTGCCTAAGCAGTTTGGGTATATAAAGGGATTGAAAGATATGATTCCGGTTGAGCTATCGGTGATTCCGGGCAAAGAGGATAGAGGGCTTGGTGATGGTGAAGGGACTGGGTTTCAGTGCCCGGTAACAGGGTTGGAGTTCAATGGGAAGTACAAGTTCTTTGCTTTGAGGGGTTGTGGGCATGTTTTGAGTGCAAAAGCTTTGAAGGAGGTGAAATCCTCGGCTTGTTTGGTTTGCCACAAGGAGGTTGTGGAGAGTGACAAAATTGTGATCAACGGGAGTGAAGAAGAGGTTGCGGCTTTGAGGGAGAGAATGGAGGAAGAAAGGGTGAAATTGAAGGATAGTAAGAAGGTGAAGAAGGGGAGGAATGTGGATGTAGCTGTGAATGGTGAAGAGGTCATTGGGGCATCACGCTTGAGCGGAATGAAACATGGGATTGAGGATAAGCTGGTAGGCAAGGATGCAAGGAAAGTGGAAGGGAATGGTAAAATTGGCATTAAAAGTAAGATTGAAGTTAAGGATGTGAAGAATAGTTCGAGCAACGGGT</genome_strand>
        <mrna_strand>CGTTGTCGAACGAGTCATTAAAGCATCCTGTTGTTATTGATAAGCTTGGGAATTTGTTCAATAAGGAGACGTTAGTTGAGGCTTTATTGAAGAAAAGGCTGCCTAAGCAGTTTGGGTATATAAAGGGATTGAAAGATATGATTCCGGTTGAGCTATCGGTGATTCCGGGCAAAGAGGATAGAGGGCTTGGTGATGGTGAAGGGACTGGGTTTCAGTGCCCGGTAACAGGGTTGGAGTTCAATGGGAAGTACAAGTTCTTTGCTTTGAGGGGTTGTGGGCATGTTTTGAGTGCAAAAGCTTTGAAGGAGGTGAAATCCTCGGCTTGTTTGGTTTGCCACAAGGAGGTTGTGGAGAGTGACAAAATTGTGATCAACGGGAGTGAAGAAGAGGTTGCGGCTTTGAGGGAGAGAATGGAGGAAGAAAGGGTGAAATTGAAGGATAGTAAGAAGGTGAAGAAGGGGAGGAATGTGGATGTAGCTGTGAATGGTGAAGAGGTCATTGGGGCATCACGCTTGAGCGGAATGAAACATGGGATTGAGGATAAGCTGGTANGCAAGGATGCAAGGAAAGTGGGAGGGAATGGTAAAATTGGCATTAAAAGTAAGATTGAAGTTAAAGATGTGAAGAATAGTTCGAGCAACGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E543877" ref_strand="+" ref_description="SGN-E543877 	[TUS-65-O18]">
      <seq>gttcaataaggagacgttagttgaggctttattgaagaaaaggctgcctaagcagtttgggtatataaagggattgaaagatatgattccggttgagctatcggtgattccgggcaaagaggatagagggcttggtgatggtgaagggactgggtttcagtgcccggtaacagggttggagttcaatgggaagtacaagttctttgctttgaggggttgtgggcatgttttgagtgcaaaagctttgaaggaggtgaaatcctcggcttgtttggtttgccacaaggaggttgtggagagtgacaaaattgtgatcaacgggagtgaagaagaggttgcggctttgagggagagaatggaggaagaaagggtgaaattgaaggatagtaagaaggtgaagaaggggaggaatgtggatgtagctgtgaatggtgaagaggtcattggggcatcacgcttgagcggaatgaaacatggattgaggataagctggtaggcaaggatgcaaggaaagtggaagggaatggtaaaattggcattaacagtaagattgaagttaaggatgtgaagaatagttcgagcaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="72444" stop="73630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72744" g_stop="73330" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E543877" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72744" e_stop="73330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAATAAGGAGACGTTAGTTGAGGCTTTATTGAAGAAAAGGCTGCCTAAGCAGTTTGGGTATATAAAGGGATTGAAAGATATGATTCCGGTTGAGCTATCGGTGATTCCGGGCAAAGAGGATAGAGGGCTTGGTGATGGTGAAGGGACTGGGTTTCAGTGCCCGGTAACAGGGTTGGAGTTCAATGGGAAGTACAAGTTCTTTGCTTTGAGGGGTTGTGGGCATGTTTTGAGTGCAAAAGCTTTGAAGGAGGTGAAATCCTCGGCTTGTTTGGTTTGCCACAAGGAGGTTGTGGAGAGTGACAAAATTGTGATCAACGGGAGTGAAGAAGAGGTTGCGGCTTTGAGGGAGAGAATGGAGGAAGAAAGGGTGAAATTGAAGGATAGTAAGAAGGTGAAGAAGGGGAGGAATGTGGATGTAGCTGTGAATGGTGAAGAGGTCATTGGGGCATCACGCTTGAGCGGAATGAAACATGGGATTGAGGATAAGCTGGTAGGCAAGGATGCAAGGAAAGTGGAAGGGAATGGTAAAATTGGCATTAAAAGTAAGATTGAAGTTAAGGATGTGAAGAATAGTTCGAGCAACG</genome_strand>
        <mrna_strand>GTTCAATAAGGAGACGTTAGTTGAGGCTTTATTGAAGAAAAGGCTGCCTAAGCAGTTTGGGTATATAAAGGGATTGAAAGATATGATTCCGGTTGAGCTATCGGTGATTCCGGGCAAAGAGGATAGAGGGCTTGGTGATGGTGAAGGGACTGGGTTTCAGTGCCCGGTAACAGGGTTGGAGTTCAATGGGAAGTACAAGTTCTTTGCTTTGAGGGGTTGTGGGCATGTTTTGAGTGCAAAAGCTTTGAAGGAGGTGAAATCCTCGGCTTGTTTGGTTTGCCACAAGGAGGTTGTGGAGAGTGACAAAATTGTGATCAACGGGAGTGAAGAAGAGGTTGCGGCTTTGAGGGAGAGAATGGAGGAAGAAAGGGTGAAATTGAAGGATAGTAAGAAGGTGAAGAAGGGGAGGAATGTGGATGTAGCTGTGAATGGTGAAGAGGTCATTGGGGCATCACGCTTGAGCGGAATGAAACAT-GGATTGAGGATAAGCTGGTAGGCAAGGATGCAAGGAAAGTGGAAGGGAATGGTAAAATTGGCATTAACAGTAAGATTGAAGTTAAGGATGTGAAGAATAGTTCGAGCAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E305593" ref_strand="+" ref_description="SGN-E305593 	[cLEX-14-G18]">
      <seq>ttcaataaggagacgttagttgaggctttattgaagaaaaggctgcctaagcagtttgggtatataaagggattgaaagatatgattccggttgagctatcggtgattccgggcaaagaggatagagggcttggtgatggtgaagggactgggtttcagtgcccggtaacagggttggagttcaatgggaagtacaagttctttgctttgaggggttgtgggcatgttttgagtgcaaaagctttgaaggaggtgaaatcctcggcttgtttggtttgccacaaggaggttgtggagagtgacaaaattgtgatcaacgggagtgaagaagaggttgcggctttgagggagagaatggaggaagaaagggtgaaattgaaggatagtaagaaggtgaagaaggggaggaatgtggatgtagctgtgaatggtgaagaggtcattggggcatcacgcttgagcggaatgaaacatggattgaggataagctggtaggcaaggatgcaaggaaagtggaagggaatggtaaaattggcattaaaagtaagattgaagttaaggatgtgaagaatagttcgagcaacgggtctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="72445" stop="73637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72745" g_stop="73337" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E305593" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72745" e_stop="73337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATAAGGAGACGTTAGTTGAGGCTTTATTGAAGAAAAGGCTGCCTAAGCAGTTTGGGTATATAAAGGGATTGAAAGATATGATTCCGGTTGAGCTATCGGTGATTCCGGGCAAAGAGGATAGAGGGCTTGGTGATGGTGAAGGGACTGGGTTTCAGTGCCCGGTAACAGGGTTGGAGTTCAATGGGAAGTACAAGTTCTTTGCTTTGAGGGGTTGTGGGCATGTTTTGAGTGCAAAAGCTTTGAAGGAGGTGAAATCCTCGGCTTGTTTGGTTTGCCACAAGGAGGTTGTGGAGAGTGACAAAATTGTGATCAACGGGAGTGAAGAAGAGGTTGCGGCTTTGAGGGAGAGAATGGAGGAAGAAAGGGTGAAATTGAAGGATAGTAAGAAGGTGAAGAAGGGGAGGAATGTGGATGTAGCTGTGAATGGTGAAGAGGTCATTGGGGCATCACGCTTGAGCGGAATGAAACATGGGATTGAGGATAAGCTGGTAGGCAAGGATGCAAGGAAAGTGGAAGGGAATGGTAAAATTGGCATTAAAAGTAAGATTGAAGTTAAGGATGTGAAGAATAGTTCGAGCAACGGGTCTGG</genome_strand>
        <mrna_strand>TTCAATAAGGAGACGTTAGTTGAGGCTTTATTGAAGAAAAGGCTGCCTAAGCAGTTTGGGTATATAAAGGGATTGAAAGATATGATTCCGGTTGAGCTATCGGTGATTCCGGGCAAAGAGGATAGAGGGCTTGGTGATGGTGAAGGGACTGGGTTTCAGTGCCCGGTAACAGGGTTGGAGTTCAATGGGAAGTACAAGTTCTTTGCTTTGAGGGGTTGTGGGCATGTTTTGAGTGCAAAAGCTTTGAAGGAGGTGAAATCCTCGGCTTGTTTGGTTTGCCACAAGGAGGTTGTGGAGAGTGACAAAATTGTGATCAACGGGAGTGAAGAAGAGGTTGCGGCTTTGAGGGAGAGAATGGAGGAAGAAAGGGTGAAATTGAAGGATAGTAAGAAGGTGAAGAAGGGGAGGAATGTGGATGTAGCTGTGAATGGTGAAGAGGTCATTGGGGCATCACGCTTGAGCGGAATGAAACAT-GGATTGAGGATAAGCTGGTAGGCAAGGATGCAAGGAAAGTGGAAGGGAATGGTAAAATTGGCATTAAAAGTAAGATTGAAGTTAAGGATGTGAAGAATAGTTCGAGCAACGGGTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E226787" ref_strand="-" ref_description="SGN-E226787 	[cLEL-26-A6]">
      <seq>caaggaaagtggaagggaatggtaaaattggcattaaaagtaagattgaagttaaggatgtgaagaatagttcgagcaacgggtctgggaagaggtttaaggctgttgatgtagctccagctcatgctacaaaggaagtctatgcctccattttcacttcatcaagaaagtctgacttcaaggagacttattcttgcagatctttgccccttggaagaaactgatagctgtttttgtcgaggtgatctgctagtgtcttggactggttttattgtcttaaaatgttgtttcacgatagatagttacatgctagaccactgagtcgtagatgttgcctcttgccatttgattcagtcggtactttatatgtataacatacattgttattgtacatttgatgttgcttttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="72950" stop="73961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73250" g_stop="73661" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="413" polyA_stop="426"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E226787" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226787" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73250" e_stop="73661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGAAAGTGGAAGGGAATGGTAAAATTGGCATTAAAAGTAAGATTGAAGTTAAGGATGTGAAGAATAGTTCGAGCAACGGGTCTGGGAAGAGGTTTAAGGCTGTTGATGTAGCTCCAGCTCATGCTACAAAGGAAGTCTATGCCTCCATTTTCACTTCATCAAGAAAGTCTGACTTCAAGGAGACTTATTCTTGCAGATCTTTGCCCCTTGGAAGAAACTGATAGCTGTTTTTGTCGAGGTGATCTGCTAGTGTCTTGGACTGGTTTTATTGTCTTAAAATGTTGTTTCACGATAGATAGTTACATGCTAGACCACTGAGTCGTAGATGTTGCCTCTTGCCATTTGATTCAGTCGGTACTTTATATGTATAACATACATTGTTATTGTACATTTGATGTTGCTTTTCAGA</genome_strand>
        <mrna_strand>CAAGGAAAGTGGAAGGGAATGGTAAAATTGGCATTAAAAGTAAGATTGAAGTTAAGGATGTGAAGAATAGTTCGAGCAACGGGTCTGGGAAGAGGTTTAAGGCTGTTGATGTAGCTCCAGCTCATGCTACAAAGGAAGTCTATGCCTCCATTTTCACTTCATCAAGAAAGTCTGACTTCAAGGAGACTTATTCTTGCAGATCTTTGCCCCTTGGAAGAAACTGATAGCTGTTTTTGTCGAGGTGATCTGCTAGTGTCTTGGACTGGTTTTATTGTCTTAAAATGTTGTTTCACGATAGATAGTTACATGCTAGACCACTGAGTCGTAGATGTTGCCTCTTGCCATTTGATTCAGTCGGTACTTTATATGTATAACATACATTGTTATTGTACATTTGATGTTGCTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E226638" ref_strand="-" ref_description="SGN-E226638 	[cLEL-26-A8]">
      <seq>cttattcttgcagatctttgccccttggaagaaactgatagctgtttttgtcgaggtgatctgctagtgtcttggactggttttattgtcttaaaatgttgtttcacgatagatagttacatgctagaccactgagtcgtagatgttgcctcttgccatttgattcagtcggtactttatatgtataacatacattgttattgtacatttgatgttgcttttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="73136" stop="73961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73436" g_stop="73661" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="227" polyA_stop="240"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E226638" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226638" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73436" e_stop="73661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTCTTGCAGATCTTTGCCCCTTGGAAGAAACTGATAGCTGTTTTTGTCGAGGTGATCTGCTAGTGTCTTGGACTGGTTTTATTGTCTTAAAATGTTGTTTCACGATAGATAGTTACATGCTAGACCACTGAGTCGTAGATGTTGCCTCTTGCCATTTGATTCAGTCGGTACTTTATATGTATAACATACATTGTTATTGTACATTTGATGTTGCTTTTCAGA</genome_strand>
        <mrna_strand>CTTATTCTTGCAGATCTTTGCCCCTTGGAAGAAACTGATAGCTGTTTTTGTCGAGGTGATCTGCTAGTGTCTTGGACTGGTTTTATTGTCTTAAAATGTTGTTTCACGATAGATAGTTACATGCTAGACCACTGAGTCGTAGATGTTGCCTCTTGCCATTTGATTCAGTCGGTACTTTATATGTATAACATACATTGTTATTGTACATTTGATGTTGCTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E328795" ref_strand="+" ref_description="SGN-E328795 	[cTOC-23-N2]">
      <seq>tctattctctttccttttggtcaaaatagtccaaatttcaaattggactattcttcttcatatatataaataaatcatctatctctgcatcaaccatatcaaccatgataagcaaaacttcttttgtgctatttctcattgctattgctctttttcttcatgatgtaacttctataggtgttaattacgggactctcggaaacaacctccctccgccagctcaagtggctcagttcatcaaggataaaacggtcatagaccgtgtaaagattttcgatatcaaccctgacatcctccgtgcttttgcaaacacaggaatctcgctaacagtcacagtaccaaacggcgagatcccgaatctactggatctcgcctatgctcgacgatacgtcgagcagaatatcaaacctcattacccacagacaaagatggatgttattctagtgggtaatgaggttcttcactgggatacacctgaggtacagaacaagcttgttccagctatgaaaagtttttaccaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="75047" stop="76169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75347" g_stop="75869" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E328795" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75347" e_stop="75869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTCTCTTTCCTTTTGGTCAAAATAGTCCAAATTTCAAATTGGACTATTCTTCTTCATATATATAAATAAATCATCTATCTCTGCATCAACCATATCAACCATGATAAGCAAAACTTCTTTTGTGCTATTTCTCATTGCTATTGCTCTTTTTCTTCATGATGTAACTTCTATAGGTGTTAATTACGGGACTCTCGGAAACAACCTCCCTCCGCCAGCTCAAGTGGCTCAGTTCATCAAGGATAAAACGGTCATAGACCGTGTAAAGATTTTCGATATCAACCCTGACATCCTCCGTGCTTTTGCAAACACAGGAATCTCGCTAACAGTCACAGTACCAAACGGCGAGATCCCGAATCTACTGGATCTCGCCTATGCTCGACGATACGTCGAGCAGAATATCAAACCTCATTACCCACAGACAAAGATGGATGTTATTCTAGTGGGTAATGAGGTTCTTCACTGGGATACACCTGAGGTACAGAACAAGCTTGTTCCAGCTATGAAAGTTTTTTACCAAGC</genome_strand>
        <mrna_strand>TCTATTCTCTTTCCTTTTGGTCAAAATAGTCCAAATTTCAAATTGGACTATTCTTCTTCATATATATAAATAAATCATCTATCTCTGCATCAACCATATCAACCATGATAAGCAAAACTTCTTTTGTGCTATTTCTCATTGCTATTGCTCTTTTTCTTCATGATGTAACTTCTATAGGTGTTAATTACGGGACTCTCGGAAACAACCTCCCTCCGCCAGCTCAAGTGGCTCAGTTCATCAAGGATAAAACGGTCATAGACCGTGTAAAGATTTTCGATATCAACCCTGACATCCTCCGTGCTTTTGCAAACACAGGAATCTCGCTAACAGTCACAGTACCAAACGGCGAGATCCCGAATCTACTGGATCTCGCCTATGCTCGACGATACGTCGAGCAGAATATCAAACCTCATTACCCACAGACAAAGATGGATGTTATTCTAGTGGGTAATGAGGTTCTTCACTGGGATACACCTGAGGTACAGAACAAGCTTGTTCCAGCTATGAAAAGTTTTTACCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E282718" ref_strand="+" ref_description="SGN-E282718 	[cLER-15-F2]">
      <seq>tctctttccttttggtcaaaatagtccaaatttcaaattggactattcttcttcatatatataaataaatcatctatctctgcatcaaccatatcaaccatgataagcaaaacttcttttgtgctatttctcattgctattgctctttttcttcatgatgtaacttctataggtgttaattacgggactctcggaaacaacctccctccgccagctcaagtggctcagttcatcaaggataaaacggtcatagaccgtgtaaagattttcgatatcaaccctgacatcctccgtgcttttgcaaacacaggaatctcgctaacagtcacagtaccaaacggcgagatcccgaatctactggatctcgcctatgctcgacgatacgtcgagcagaatatcaaacctcattacccacagacaaagatggatgttattctagtgggtaatgaggttcttcactgggatacacctgaggtacagaacaagcttgttccagctatgaaagttttttaccaagctttgggtttatctgggttgaagggtataaaagtctcttcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="75052" stop="76212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75352" g_stop="75912" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E282718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75352" e_stop="75912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTCCTTTTGGTCAAAATAGTCCAAATTTCAAATTGGACTATTCTTCTTCATATATATAAATAAATCATCTATCTCTGCATCAACCATATCAACCATGATAAGCAAAACTTCTTTTGTGCTATTTCTCATTGCTATTGCTCTTTTTCTTCATGATGTAACTTCTATAGGTGTTAATTACGGGACTCTCGGAAACAACCTCCCTCCGCCAGCTCAAGTGGCTCAGTTCATCAAGGATAAAACGGTCATAGACCGTGTAAAGATTTTCGATATCAACCCTGACATCCTCCGTGCTTTTGCAAACACAGGAATCTCGCTAACAGTCACAGTACCAAACGGCGAGATCCCGAATCTACTGGATCTCGCCTATGCTCGACGATACGTCGAGCAGAATATCAAACCTCATTACCCACAGACAAAGATGGATGTTATTCTAGTGGGTAATGAGGTTCTTCACTGGGATACACCTGAGGTACAGAACAAGCTTGTTCCAGCTATGAAAGTTTTTTACCAAGCTTTGGGTTTATCTGGGTTGAAGGGTATAAAAGTCTCTTCAGCT</genome_strand>
        <mrna_strand>TCTCTTTCCTTTTGGTCAAAATAGTCCAAATTTCAAATTGGACTATTCTTCTTCATATATATAAATAAATCATCTATCTCTGCATCAACCATATCAACCATGATAAGCAAAACTTCTTTTGTGCTATTTCTCATTGCTATTGCTCTTTTTCTTCATGATGTAACTTCTATAGGTGTTAATTACGGGACTCTCGGAAACAACCTCCCTCCGCCAGCTCAAGTGGCTCAGTTCATCAAGGATAAAACGGTCATAGACCGTGTAAAGATTTTCGATATCAACCCTGACATCCTCCGTGCTTTTGCAAACACAGGAATCTCGCTAACAGTCACAGTACCAAACGGCGAGATCCCGAATCTACTGGATCTCGCCTATGCTCGACGATACGTCGAGCAGAATATCAAACCTCATTACCCACAGACAAAGATGGATGTTATTCTAGTGGGTAATGAGGTTCTTCACTGGGATACACCTGAGGTACAGAACAAGCTTGTTCCAGCTATGAAAGTTTTTTACCAAGCTTTGGGTTTATCTGGGTTGAAGGGTATAAAAGTCTCTTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E339570" ref_strand="+" ref_description="SGN-E339570 	[cTOE-16-M22]">
      <seq>aatagtccaaatttcaaattggactattcttcttcatatatataaataaatcatctatctctgcatcaaccatatcaaccatgataagcaaaacttcttttgtgctatttctcattgctattgctctttttcttcatgatgtaacttctataggtgttaattacgggactctcggaaacaacctccctccgccagctcaagtggctcagttcatcaaggataaaacggtcatagaccgtgtaaagattttcgatatcaaccctgacatcctccgtgcttttgcaaacacaggaatctcgctaacagtcacagtaccaaacggcgagatcccgaatctactggatctcgcctatgctcgacgatacgtcgagcagaatatcaaacctcattacccacagacaaagatggatgttattctagtgggtaatgaggttcttcactgggatacacctgaggtacagaacaagcttgttccagctatgaaagttttttaccaagctttgggtttatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="75071" stop="76184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75371" g_stop="75884" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E339570" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75371" e_stop="75884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGTCCAAATTTCAAATTGGACTATTCTTCTTCATATATATAAATAAATCATCTATCTCTGCATCAACCATATCAACCATGATAAGCAAAACTTCTTTTGTGCTATTTCTCATTGCTATTGCTCTTTTTCTTCATGATGTAACTTCTATAGGTGTTAATTACGGGACTCTCGGAAACAACCTCCCTCCGCCAGCTCAAGTGGCTCAGTTCATCAAGGATAAAACGGTCATAGACCGTGTAAAGATTTTCGATATCAACCCTGACATCCTCCGTGCTTTTGCAAACACAGGAATCTCGCTAACAGTCACAGTACCAAACGGCGAGATCCCGAATCTACTGGATCTCGCCTATGCTCGACGATACGTCGAGCAGAATATCAAACCTCATTACCCACAGACAAAGATGGATGTTATTCTAGTGGGTAATGAGGTTCTTCACTGGGATACACCTGAGGTACAGAACAAGCTTGTTCCAGCTATGAAAGTTTTTTACCAAGCTTTGGGTTTATCTGG</genome_strand>
        <mrna_strand>AATAGTCCAAATTTCAAATTGGACTATTCTTCTTCATATATATAAATAAATCATCTATCTCTGCATCAACCATATCAACCATGATAAGCAAAACTTCTTTTGTGCTATTTCTCATTGCTATTGCTCTTTTTCTTCATGATGTAACTTCTATAGGTGTTAATTACGGGACTCTCGGAAACAACCTCCCTCCGCCAGCTCAAGTGGCTCAGTTCATCAAGGATAAAACGGTCATAGACCGTGTAAAGATTTTCGATATCAACCCTGACATCCTCCGTGCTTTTGCAAACACAGGAATCTCGCTAACAGTCACAGTACCAAACGGCGAGATCCCGAATCTACTGGATCTCGCCTATGCTCGACGATACGTCGAGCAGAATATCAAACCTCATTACCCACAGACAAAGATGGATGTTATTCTAGTGGGTAATGAGGTTCTTCACTGGGATACACCTGAGGTACAGAACAAGCTTGTTCCAGCTATGAAAGTTTTTTACCAAGCTTTGGGTTTATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E307410" ref_strand="+" ref_description="SGN-E307410 	[cLEY-12-I10]">
      <seq>aaacttcttttgtgctatttctcattgctattgctctttttcttcatgatgtaacttctataggtgttaattacgggactctcggaaacaacctccctccgccagctcaagtggctcagttcatcaaggataaaacggtcatagaccgtgtaaagattttcgatatcaaccctgacatcctccgtgcttttgcaaacacaggaatctcgctaacagtcacagtaccaaacggcgagatcccgaatctactggatctcgcctatgctcgacgatacgtcgagcagaatatcaaacctcattacccacagacaaagatggatgttattctagtgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="75161" stop="76095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75461" g_stop="75795" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E307410" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75461" e_stop="75795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCTTTTGTGCTATTTCTCATTGCTATTGCTCTTTTTCTTCATGATGTAACTTCTATAGGTGTTAATTACGGGACTCTCGGAAACAACCTCCCTCCGCCAGCTCAAGTGGCTCAGTTCATCAAGGATAAAACGGTCATAGACCGTGTAAAGATTTTCGATATCAACCCTGACATCCTCCGTGCTTTTGCAAACACAGGAATCTCGCTAACAGTCACAGTACCAAACGGCGAGATCCCGAATCTACTGGATCTCGCCTATGCTCGACGATACGTCGAGCAGAATATCAAACCTCATTACCCACAGACAAAGATGGATGTTATTCTAGTGGGT</genome_strand>
        <mrna_strand>AAACTTCTTTTGTGCTATTTCTCATTGCTATTGCTCTTTTTCTTCATGATGTAACTTCTATAGGTGTTAATTACGGGACTCTCGGAAACAACCTCCCTCCGCCAGCTCAAGTGGCTCAGTTCATCAAGGATAAAACGGTCATAGACCGTGTAAAGATTTTCGATATCAACCCTGACATCCTCCGTGCTTTTGCAAACACAGGAATCTCGCTAACAGTCACAGTACCAAACGGCGAGATCCCGAATCTACTGGATCTCGCCTATGCTCGACGATACGTCGAGCAGAATATCAAACCTCATTACCCACAGACAAAGATGGATGTTATTCTAGTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E338362" ref_strand="+" ref_description="SGN-E338362 	[cTOE-13-L16]">
      <seq>aacttcttttgtgctatttctcattgctattgctctttttcttcatgatgtaacttctataggtgttaattacgggactctcggaaacaacctccctccgccagctcaagtggctcagttcatcaaggataaaacggtcatagaccgtgtaaagattttcgatatcaaccctgacatcctccgtgcttttgcaaacacaggaatctcgctaacagtcacagtaccaaacggcgagatcccgaatctactggatctcgcctatgctcgacgatacgtcgagcagaatatcaaacctcattacccacagacaaagatggatgttattctagtgggtaatgaggttcttcactgggatacacctgaggtacagaacaagcttgttccagctatgaaagttttttaccaagctttgggtttatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="75162" stop="76182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75462" g_stop="75882" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E338362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75462" e_stop="75882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCTTTTGTGCTATTTCTCATTGCTATTGCTCTTTTTCTTCATGATGTAACTTCTATAGGTGTTAATTACGGGACTCTCGGAAACAACCTCCCTCCGCCAGCTCAAGTGGCTCAGTTCATCAAGGATAAAACGGTCATAGACCGTGTAAAGATTTTCGATATCAACCCTGACATCCTCCGTGCTTTTGCAAACACAGGAATCTCGCTAACAGTCACAGTACCAAACGGCGAGATCCCGAATCTACTGGATCTCGCCTATGCTCGACGATACGTCGAGCAGAATATCAAACCTCATTACCCACAGACAAAGATGGATGTTATTCTAGTGGGTAATGAGGTTCTTCACTGGGATACACCTGAGGTACAGAACAAGCTTGTTCCAGCTATGAAAGTTTTTTACCAAGCTTTGGGTTTATCT</genome_strand>
        <mrna_strand>AACTTCTTTTGTGCTATTTCTCATTGCTATTGCTCTTTTTCTTCATGATGTAACTTCTATAGGTGTTAATTACGGGACTCTCGGAAACAACCTCCCTCCGCCAGCTCAAGTGGCTCAGTTCATCAAGGATAAAACGGTCATAGACCGTGTAAAGATTTTCGATATCAACCCTGACATCCTCCGTGCTTTTGCAAACACAGGAATCTCGCTAACAGTCACAGTACCAAACGGCGAGATCCCGAATCTACTGGATCTCGCCTATGCTCGACGATACGTCGAGCAGAATATCAAACCTCATTACCCACAGACAAAGATGGATGTTATTCTAGTGGGTAATGAGGTTCTTCACTGGGATACACCTGAGGTACAGAACAAGCTTGTTCCAGCTATGAAAGTTTTTTACCAAGCTTTGGGTTTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E305369" ref_strand="+" ref_description="SGN-E305369 	[cLEX-15-A5]">
      <seq>ttcttttgtgctatttctcattgctattgctcttttcttcatgatgtaacttctataggtgttaattacgggactctcggaaacaacctccctccgcagctcaagtggctcattatcaaggataaaacggcatagaccgtgtaaagattttcgatatcaaccctgacatcctccggcttttgcaaaccaggaatctcgctacagtcacagaccaaacggcgagatcccaatctactggatctccctatgctcgacgatacgtcgagcagaatatcaaacctcattacccacancaaagatggatttattctagtgggaatgaggtcttcactgggatacacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="75165" stop="76123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75465" g_stop="75823" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E305369" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.044" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75465" e_stop="75823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTGTGCTATTTCTCATTGCTATTGCTCTTTTTCTTCATGATGTAACTTCTATAGGTGTTAATTACGGGACTCTCGGAAACAACCTCCCTCCGCCAGCTCAAGTGGCTCAGTTCATCAAGGATAAAACGGTCATAGACCGTGTAAAGATTTTCGATATCAACCCTGACATCCTCCGTGCTTTTGCAAACACAGGAATCTCGCTAACAGTCACAGTACCAAACGGCGAGATCCCGAATCTACTGGATCTCGCCTATGCTCGACGATACGTCGAGCAGAATATCAAACCTCATTACCCACAGACAAAGATGGATGTTATTCTAGTGGGTAATGAGGTTCTTCACTGGGATACACCTG</genome_strand>
        <mrna_strand>TTCTTTTGTGCTATTTCTCATTGCTATTGCTCTT-TTCTTCATGATGTAACTTCTATAGGTGTTAATTACGGGACTCTCGGAAACAACCTCCCTCCG-CAGCTCAAGTGGCTCA-TT-ATCAAGGATAAAACGG-CATAGACCGTGTAAAGATTTTCGATATCAACCCTGACATCCTCCG-GCTTTTGCAAAC-CAGGAATCTCGCT-ACAGTCACAG-ACCAAACGGCGAGATCCC-AATCTACTGGATCTC-CCTATGCTCGACGATACGTCGAGCAGAATATCAAACCTCATTACCCACA-NCAAAGATGGAT-TTATTCTAGTGGG-AATGAGG-TCTTCACTGGGATACACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E341118" ref_strand="+" ref_description="SGN-E341118 	[cTOE-22-D17]">
      <seq>ttctataggtgttaattacgggactctcggaaacaacctccctccgccagctcaagtggctcagttcatcaaggataaaacggtcatagaccgtgtaaagattttcgatatcaaccctgacatcctccgtgcttttgcaaacacaggaatctcgctaacagtcacagtaccaaacggcgagatcccgaatctactggatctcgcctatgctcgacgatacgtcgagcagaatatcaaacctcattacccacagacaaagatggatgttattctagtgggtaatgaggttcttcactgggatacacctgaggtacagaacaagcttgttccagctatgaaagttttttaccaagctttgggtttatctgggttgaagggtataaaagtctcttcagctcattcgttgggtattctactccgttctaacccacccagtgcagcccggtttcgacccggttgggatgtgggtattctagctccgatgctacaatttcttcgtgaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="75216" stop="76320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75516" g_stop="76020" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E341118" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75516" e_stop="76020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATAGGTGTTAATTACGGGACTCTCGGAAACAACCTCCCTCCGCCAGCTCAAGTGGCTCAGTTCATCAAGGATAAAACGGTCATAGACCGTGTAAAGATTTTCGATATCAACCCTGACATCCTCCGTGCTTTTGCAAACACAGGAATCTCGCTAACAGTCACAGTACCAAACGGCGAGATCCCGAATCTACTGGATCTCGCCTATGCTCGACGATACGTCGAGCAGAATATCAAACCTCATTACCCACAGACAAAGATGGATGTTATTCTAGTGGGTAATGAGGTTCTTCACTGGGATACACCTGAGGTACAGAACAAGCTTGTTCCAGCTATGAAAGTTTTTTACCAAGCTTTGGGTTTATCTGGGTTGAAGGGTATAAAAGTCTCTTCAGCTCATTCGTTGGGTATTCTACTCCGTTCTAACCCACCCAGTGCAGCCCGGTTTCGACCCGGTTGGGATGTGGGTATTCTAGCTCCGATGCTACAATTTCTTCGTGAAACA</genome_strand>
        <mrna_strand>TTCTATAGGTGTTAATTACGGGACTCTCGGAAACAACCTCCCTCCGCCAGCTCAAGTGGCTCAGTTCATCAAGGATAAAACGGTCATAGACCGTGTAAAGATTTTCGATATCAACCCTGACATCCTCCGTGCTTTTGCAAACACAGGAATCTCGCTAACAGTCACAGTACCAAACGGCGAGATCCCGAATCTACTGGATCTCGCCTATGCTCGACGATACGTCGAGCAGAATATCAAACCTCATTACCCACAGACAAAGATGGATGTTATTCTAGTGGGTAATGAGGTTCTTCACTGGGATACACCTGAGGTACAGAACAAGCTTGTTCCAGCTATGAAAGTTTTTTACCAAGCTTTGGGTTTATCTGGGTTGAAGGGTATAAAAGTCTCTTCAGCTCATTCGTTGGGTATTCTACTCCGTTCTAACCCACCCAGTGCAGCCCGGTTTCGACCCGGTTGGGATGTGGGTATTCTAGCTCCGATGCTACAATTTCTTCGTGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E310267" ref_strand="+" ref_description="SGN-E310267 	[cTOA-1-C4]">
      <seq>taacagtcacagtaccaaacggcgagatcccgaatctactggatctcgcctatgctcgacgatacgtcgagcacaatatcaaacctcattacccacagacaaagatggatgttattctagtgggtaatgaggttcttcactgggatacacctgaggtacagaacaagcttgttccagctatgaaaggttgttaccaagctttgggtttatctgggttgaagggtataaaagtctcttcagctcattcgttgggtattctactccgttctaacccacccagggcagcccggtttcgacccggttgggatgtgggtattctagctccgatgctacaatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="75371" stop="76310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75671" g_stop="76010" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E310267" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75671" e_stop="76010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAGTCACAGTACCAAACGGCGAGATCCCGAATCTACTGGATCTCGCCTATGCTCGACGATACGTCGAGCAGAATATCAAACCTCATTACCCACAGACAAAGATGGATGTTATTCTAGTGGGTAATGAGGTTCTTCACTGGGATACACCTGAGGTACAGAACAAGCTTGTTCCAGCTATGAAAGTTTTTTACCAAGCTTTGGGTTTATCTGGGTTGAAGGGTATAAAAGTCTCTTCAGCTCATTCGTTGGGTATTCTACTCCGTTCTAACCCACCCAGTGCAGCCCGGTTTCGACCCGGTTGGGATGTGGGTATTCTAGCTCCGATGCTACAATTTCT</genome_strand>
        <mrna_strand>TAACAGTCACAGTACCAAACGGCGAGATCCCGAATCTACTGGATCTCGCCTATGCTCGACGATACGTCGAGCACAATATCAAACCTCATTACCCACAGACAAAGATGGATGTTATTCTAGTGGGTAATGAGGTTCTTCACTGGGATACACCTGAGGTACAGAACAAGCTTGTTCCAGCTATGAAAGGTTGTTACCAAGCTTTGGGTTTATCTGGGTTGAAGGGTATAAAAGTCTCTTCAGCTCATTCGTTGGGTATTCTACTCCGTTCTAACCCACCCAGGGCAGCCCGGTTTCGACCCGGTTGGGATGTGGGTATTCTAGCTCCGATGCTACAATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E279879" ref_strand="+" ref_description="SGN-E279879 	[cLER-8-G3]">
      <seq>aaagatggatgttattctagtgggtaatgaggttcttcactgggatacacctgaggtacagaacaagcttgttccagctatgaaagttttttaccaagctttgggtttatctgggttgaagggtataaaagtctcttcagctcattcgttgggtattctactccgttctaacccacccagtgcagcccggtttcgacccggttgggatgtgggtattctagctccgatgctacaatttcttcgtgaaacaaaaggtcctttcatggtaaatccctatccctacttcggatacaacaagaaacaagaggattttcttctatttagaaagaataaaggggtttacgatagattttcgaagaaatggtatacgaattcttttgatatgttgttggatgcggtgtatatgtcgatggtgagattgaagcattcagatgtggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="75471" stop="76510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75771" g_stop="76210" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E279879" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75771" e_stop="76210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGGATGTTATTCTAGTGGGTAATGAGGTTCTTCACTGGGATACACCTGAGGTACAGAACAAGCTTGTTCCAGCTATGAAAGTTTTTTACCAAGCTTTGGGTTTATCTGGGTTGAAGGGTATAAAAGTCTCTTCAGCTCATTCGTTGGGTATTCTACTCCGTTCTAACCCACCCAGTGCAGCCCGGTTTCGACCCGGTTGGGATGTGGGTATTCTAGCTCCGATGCTACAATTTCTTCGTGAAACAAAAGGTCCTTTCATGGTAAATCCCTATCCCTACTTCGGATACAACAAGAAACAAGAGGATTTTCTTCTATTTAGAAAGAATAAAGGGGTTTACGATAGATTTTCGAAGAAATGGTATACGAATTCTTTTGATATGTTGTTGGATGCGGTGTATATGTCGATGGTGAGATTGAAGCATTCAGATGTGGAGA</genome_strand>
        <mrna_strand>AAAGATGGATGTTATTCTAGTGGGTAATGAGGTTCTTCACTGGGATACACCTGAGGTACAGAACAAGCTTGTTCCAGCTATGAAAGTTTTTTACCAAGCTTTGGGTTTATCTGGGTTGAAGGGTATAAAAGTCTCTTCAGCTCATTCGTTGGGTATTCTACTCCGTTCTAACCCACCCAGTGCAGCCCGGTTTCGACCCGGTTGGGATGTGGGTATTCTAGCTCCGATGCTACAATTTCTTCGTGAAACAAAAGGTCCTTTCATGGTAAATCCCTATCCCTACTTCGGATACAACAAGAAACAAGAGGATTTTCTTCTATTTAGAAAGAATAAAGGGGTTTACGATAGATTTTCGAAGAAATGGTATACGAATTCTTTTGATATGTTGTTGGATGCGGTGTATATGTCGATGGTGAGATTGAAGCATTCAGATGTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E245232" ref_strand="+" ref_description="SGN-E245232 	[cLEF-44-D21]">
      <seq>tcttcactgggatacacctgaggtacagaacaagcttggtgcagctatgaaagttttttaccaagctttgggtttatctgggttgaagggtataaaagtctcttcagctcattcgttgggtattctactccgttctaacccacccagtgcagcccggtttcgacccggttgggatgtgggtattctagctccgatgctacaatttcttcgtgaaacaaaaggtcctttcatggtaaatccctatccctacttcggatacaacaagaaacaagaggattttcttctatttagaaagaataaaggggtttacgatagattttcgaagaaatggtatacgaattcttttgatatgttgttggatgcggtgtatatgtcgatggtgagattgaagcattcagatgtggagattgttgctgctgagacagggtggccttcgcaaggagaagcgtatgaaccgcaatgtactgtggaaaatgcagcttcgtataatggtggattgatgaagaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="75504" stop="76614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75804" g_stop="76314" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E245232" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75804" e_stop="76314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCACTGGGATACACCTGAGGTACAGAACAAGCTTGTTCCAGCTATGAAAGTTTTTTACCAAGCTTTGGGTTTATCTGGGTTGAAGGGTATAAAAGTCTCTTCAGCTCATTCGTTGGGTATTCTACTCCGTTCTAACCCACCCAGTGCAGCCCGGTTTCGACCCGGTTGGGATGTGGGTATTCTAGCTCCGATGCTACAATTTCTTCGTGAAACAAAAGGTCCTTTCATGGTAAATCCCTATCCCTACTTCGGATACAACAAGAAACAAGAGGATTTTCTTCTATTTAGAAAGAATAAAGGGGTTTACGATAGATTTTCGAAGAAATGGTATACGAATTCTTTTGATATGTTGTTGGATGCGGTGTATATGTCGATGGTGAGATTGAAGCATTCAGATGTGGAGATTGTTGCTGCTGAGACAGGGTGGCCTTCGCAAGGAGAAGCGTATGAACCGCAATGTACTGTGGAAAATGCAGCTTCGTATAATGGTGGATTGATGAAGAAATAT</genome_strand>
        <mrna_strand>TCTTCACTGGGATACACCTGAGGTACAGAACAAGCTTGGTGCAGCTATGAAAGTTTTTTACCAAGCTTTGGGTTTATCTGGGTTGAAGGGTATAAAAGTCTCTTCAGCTCATTCGTTGGGTATTCTACTCCGTTCTAACCCACCCAGTGCAGCCCGGTTTCGACCCGGTTGGGATGTGGGTATTCTAGCTCCGATGCTACAATTTCTTCGTGAAACAAAAGGTCCTTTCATGGTAAATCCCTATCCCTACTTCGGATACAACAAGAAACAAGAGGATTTTCTTCTATTTAGAAAGAATAAAGGGGTTTACGATAGATTTTCGAAGAAATGGTATACGAATTCTTTTGATATGTTGTTGGATGCGGTGTATATGTCGATGGTGAGATTGAAGCATTCAGATGTGGAGATTGTTGCTGCTGAGACAGGGTGGCCTTCGCAAGGAGAAGCGTATGAACCGCAATGTACTGTGGAAAATGCAGCTTCGTATAATGGTGGATTGATGAAGAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E235445" ref_strand="+" ref_description="SGN-E235445 	[cLED-11-G5]">
      <seq>cagtgcagcccggtttcgacccggttgggatgtgggtattctagctccgatgctacaatttcttcgtgaaacaaaaggtcctttcatggtaaatccctatccctacttcggatacaacaagaaacaagaggattttcttctatttagaaagaataaaggggtttacgatagattttcgaagaaatggtatacgaattcttttgatatgttgttggatgcggtgtatatgtcgatggtgagattgaagcattcagatgtggagattgttgctgctgagacagggtggccttcgcaaggagaagcgtatgaaccgcaatgtactgtggaaaatgcagcttcgtataatggtggattgatgaagaaatataattccgggatcggtacgccattgatgccgcacaggaagatcgagacctacattttttcattgttcaatgagaacaccaaacccggatccatcgctgagaggaacttcgggttgttccgacccgatttcactccggtttatgatgtcggagttttgaaaagcaaccaggctcacccaacaccttcattgcccccaccaaaaaccggtggcggaggcaataaaggtcaaccaaaaacaccagcagagaacaaaaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="75648" stop="78390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75948" g_stop="76482" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76483" i_stop="78000" i_length="1518">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78001" g_stop="78090" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="625" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E235445" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75948" e_stop="76482"/>
          <exon e_start="78001" e_stop="78090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGCAGCCCGGTTTCGACCCGGTTGGGATGTGGGTATTCTAGCTCCGATGCTACAATTTCTTCGTGAAACAAAAGGTCCTTTCATGGTAAATCCCTATCCCTACTTCGGATACAACAAGAAACAAGAGGATTTTCTTCTATTTAGAAAGAATAAAGGGGTTTACGATAGATTTTCGAAGAAATGGTATACGAATTCTTTTGATATGTTGTTGGATGCGGTGTATATGTCGATGGTGAGATTGAAGCATTCAGATGTGGAGATTGTTGCTGCTGAGACAGGGTGGCCTTCGCAAGGAGAAGCGTATGAACCGCAATGTACTGTGGAAAATGCAGCTTCGTATAATGGTGGATTGATGAAGAAATATAATTCCGGGATCGGTACGCCATTGATGCCGCACAGGAAGATCGAGACCTACATTTTTTCATTGTTCAATGAGAACACCAAACCCGGATCCATCGCTGAGAGGAACTTCGGGTTGTTCCGACCCGATTTCACTCCGGTTTATGATGTCGGAGTTTTGAAAAGCAACCAGGTAATTTCGAAAAATTAATACTTCCTACGCACTTTTACATTTTGAGATTTAAAACAAATCTATCATTTTAAAAAAATTGAAAATTTTATACGCAATTGTTCAATCAAAGTTAAATTATTTGATTTTTATAAAATAAAAATGTCACGTAAAATGGAATAGAGATAACAAAACAAAGTGGCTTAAACACATCTAAATTAATTGAGTACTATAATAGTATTGTTTTGTTATAAGCATAAGTAATTAAATGGAAATCTAATTAACTAGTAGATCAACTTTATTTAATTGAATCCATGAGGGGTATTTAAGTCATTTTGCTAATGTAATTATGATTATAATGGTACTGCTATAATTACAACAAGCTTTTTGTAAATAATTTCATTTTGTCTTTTGGTTTGAAGAATCTTTTTTTTCCAGTTGAGTACAGCTAGTTGTATTGCATTTTTTTCCACTCTAGAACCTAGATACATGGGAATATGTTTTCCATGTGGAGTCGTTTTGGTACTCGAATCCAATAATTTTTTTAATTTTGATTCAAGTGTTTTAATTTGACGATAGTATTAAACGTACACACTTTAAAATTATTATCATCTAATTAATAAACGTGGCATGGTCGAAAAGAAAAAAGTTGACACCTGTTGTAGTGGCCACCACATGTTATTACGTAATAGATTAATAAAAATAATTTCTTCATTGGATTCTCTTGCATTAAATAATTGTCATTTTTTCAGTGAACCAAAAAAAAAGTTTAACATGTCCAACGGCTACTTAATGAAACATGTGATGTAGTATTTACAAAATGAAAAAAGAAATAGATTTCATAAGCATCATCTTTTTTCTTTTTTTTAAAAAAAAAAGATTTCATAAGCATATCTTTAAATTTGAATCTTGTCTTCTTTGATTTTTGTTTTTTTACTTTATTCTCTCTTCTTTTTAATGTATTGCTTTCTCCTTTATGGTTCCACTAATTTAAAAATAGAAGTCGGTATTCGTAAGTGACGGATTTAGAATTTTCATAATGAGTTGTTAATGGTTATGGCTTAAACACATGACACGACCTTAGGAATTTTCGTAACCCTTTAATCGCTAGGTTGCATAGAGAATATATGATGGGTTTGGTTATTATCCATTATTTGATTCATTTTAGTTCAAGTAAACTTCATGTGATAATTATGTTAGCATTAGCGATCGAGCTAGAAATTCATATAAAAATATTCATTATTATTGAAATTTGAACTTGTAACTTAAGCGGCGGAGAGTTTGACCGTAGGAATAAATTGATTAACAGTTTTCTTGAGGAAGAGATCTAGAATGAACACTTTTTTCATTCGCTATACGCTAATTGAAGCTACTATTGATCTCTTTACTATCTAATATTTTTCACCTTTCTTATAAGAGATGCACCACCTTGCCTCTTACTAGAGTGTGTCACTACTTATGACCGATTAATCGATTTGACTTTGTTTAACTCATTCATTTGTCACCTCTAGTCGATAAGTTTTATAATTTTGATACTTACAGGCTCACCCAACACCTTCATTGCCCCCACCAAAAACCGGTGGCGGAGGCAATAAAGGTCAACCAAAAACACCAGCAGAGAACAAAAAATTC</genome_strand>
        <mrna_strand>CAGTGCAGCCCGGTTTCGACCCGGTTGGGATGTGGGTATTCTAGCTCCGATGCTACAATTTCTTCGTGAAACAAAAGGTCCTTTCATGGTAAATCCCTATCCCTACTTCGGATACAACAAGAAACAAGAGGATTTTCTTCTATTTAGAAAGAATAAAGGGGTTTACGATAGATTTTCGAAGAAATGGTATACGAATTCTTTTGATATGTTGTTGGATGCGGTGTATATGTCGATGGTGAGATTGAAGCATTCAGATGTGGAGATTGTTGCTGCTGAGACAGGGTGGCCTTCGCAAGGAGAAGCGTATGAACCGCAATGTACTGTGGAAAATGCAGCTTCGTATAATGGTGGATTGATGAAGAAATATAATTCCGGGATCGGTACGCCATTGATGCCGCACAGGAAGATCGAGACCTACATTTTTTCATTGTTCAATGAGAACACCAAACCCGGATCCATCGCTGAGAGGAACTTCGGGTTGTTCCGACCCGATTTCACTCCGGTTTATGATGTCGGAGTTTTGAAAAGCAACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCACCCAACACCTTCATTGCCCCCACCAAAAACCGGTGGCGGAGGCAATAAAGGTCAACCAAAAACACCAGCAGAGAACAAAAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E552337" ref_strand="+" ref_description="SGN-E552337 	[cTSB-3-J20]">
      <seq>ggggtttacgatagattttcgaagaaatggtatacgaattcttttgatatgttgttggatgcggtgtatatgtcgatggtgagattgaagcattcagatgtggagattgttgctgctgagacagggtggccttcgcaaggagaagcgtatgaaccgcaatgtactgtggaaaatgcagcttcgtataatggtggattgatgaagaaatataattccgggatcggtacgccattgatgccgcacaggaagatcgagacctacattttttcattgttcaatgagaacaccaaacccggatccatcgctgagaggaacttcgggttgttccgacccgatttcactccggtttatgatgtcggagttttgaaaagcaaccaggctcacccaacaccttcattgcccccaccaaaaaccggtggcggaggcaataaaggtcaaccaaaaacaccagcagagaacaaaaaattctgcatgccaaaggttgaggcaactgatgcacaactacaatccaacattaactatgtgtgcagtcagggagttgactgcacaccaattcaagtgggtggttcctgctttaaacccaacactatccgatctcacgcagcctttgccatgaactcgtactatcaaaaggaaggtcgaaacaacttcaattgtgactttgctggtactggtgtagtcgccttctccgatccaagttatggaacatgcaaatttgaatcttgaatgtacgtgaagctaaggatgatagctagtattgacttgntatatttatgaatgttatgtactttggtttcacatatataatctaattgtattggtttggtatgtaaacgttctttttatatactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="75805" stop="78875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76105" g_stop="76482" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76483" i_stop="78000" i_length="1518">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78001" g_stop="78319" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="697" r_length="319" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78320" i_stop="78419" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78420" g_stop="78575" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="853" r_length="156" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E552337" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76105" e_stop="76482"/>
          <exon e_start="78001" e_stop="78319"/>
          <exon e_start="78420" e_stop="78575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTTTACGATAGATTTTCGAAGAAATGGTATACGAATTCTTTTGATATGTTGTTGGATGCGGTGTATATGTCGATGGTGAGATTGAAGCATTCAGATGTGGAGATTGTTGCTGCTGAGACAGGGTGGCCTTCGCAAGGAGAAGCGTATGAACCGCAATGTACTGTGGAAAATGCAGCTTCGTATAATGGTGGATTGATGAAGAAATATAATTCCGGGATCGGTACGCCATTGATGCCGCACAGGAAGATCGAGACCTACATTTTTTCATTGTTCAATGAGAACACCAAACCCGGATCCATCGCTGAGAGGAACTTCGGGTTGTTCCGACCCGATTTCACTCCGGTTTATGATGTCGGAGTTTTGAAAAGCAACCAGGTAATTTCGAAAAATTAATACTTCCTACGCACTTTTACATTTTGAGATTTAAAACAAATCTATCATTTTAAAAAAATTGAAAATTTTATACGCAATTGTTCAATCAAAGTTAAATTATTTGATTTTTATAAAATAAAAATGTCACGTAAAATGGAATAGAGATAACAAAACAAAGTGGCTTAAACACATCTAAATTAATTGAGTACTATAATAGTATTGTTTTGTTATAAGCATAAGTAATTAAATGGAAATCTAATTAACTAGTAGATCAACTTTATTTAATTGAATCCATGAGGGGTATTTAAGTCATTTTGCTAATGTAATTATGATTATAATGGTACTGCTATAATTACAACAAGCTTTTTGTAAATAATTTCATTTTGTCTTTTGGTTTGAAGAATCTTTTTTTTCCAGTTGAGTACAGCTAGTTGTATTGCATTTTTTTCCACTCTAGAACCTAGATACATGGGAATATGTTTTCCATGTGGAGTCGTTTTGGTACTCGAATCCAATAATTTTTTTAATTTTGATTCAAGTGTTTTAATTTGACGATAGTATTAAACGTACACACTTTAAAATTATTATCATCTAATTAATAAACGTGGCATGGTCGAAAAGAAAAAAGTTGACACCTGTTGTAGTGGCCACCACATGTTATTACGTAATAGATTAATAAAAATAATTTCTTCATTGGATTCTCTTGCATTAAATAATTGTCATTTTTTCAGTGAACCAAAAAAAAAGTTTAACATGTCCAACGGCTACTTAATGAAACATGTGATGTAGTATTTACAAAATGAAAAAAGAAATAGATTTCATAAGCATCATCTTTTTTCTTTTTTTTAAAAAAAAAAGATTTCATAAGCATATCTTTAAATTTGAATCTTGTCTTCTTTGATTTTTGTTTTTTTACTTTATTCTCTCTTCTTTTTAATGTATTGCTTTCTCCTTTATGGTTCCACTAATTTAAAAATAGAAGTCGGTATTCGTAAGTGACGGATTTAGAATTTTCATAATGAGTTGTTAATGGTTATGGCTTAAACACATGACACGACCTTAGGAATTTTCGTAACCCTTTAATCGCTAGGTTGCATAGAGAATATATGATGGGTTTGGTTATTATCCATTATTTGATTCATTTTAGTTCAAGTAAACTTCATGTGATAATTATGTTAGCATTAGCGATCGAGCTAGAAATTCATATAAAAATATTCATTATTATTGAAATTTGAACTTGTAACTTAAGCGGCGGAGAGTTTGACCGTAGGAATAAATTGATTAACAGTTTTCTTGAGGAAGAGATCTAGAATGAACACTTTTTTCATTCGCTATACGCTAATTGAAGCTACTATTGATCTCTTTACTATCTAATATTTTTCACCTTTCTTATAAGAGATGCACCACCTTGCCTCTTACTAGAGTGTGTCACTACTTATGACCGATTAATCGATTTGACTTTGTTTAACTCATTCATTTGTCACCTCTAGTCGATAAGTTTTATAATTTTGATACTTACAGGCTCACCCAACACCTTCATTGCCCCCACCAAAAACCGGTGGCGGAGGCAATAAAGGTCAACCAAAAACACCAGCAGAGAACAAAAAATTCTGCATGCCAAAGGTTGAGGCAACTGATGCACAACTACAATCCAACATTAACTATGTGTGCAGTCAGGGAGTTGACTGCACACCAATTCAAGTGGGTGGTTCCTGCTTTAAACCCAACACTATCCGATCTCACGCAGCCTTTGCCATGAACTCGTACTATCAAAAGGAAGGTCGAAACAACTTCAATTGTGACTTTGCTGGTACTGGTGTAGTCGCCTTCTCCGATCCAAGTAAGGTTTTTTAAAACATGAAATTATATGATCTTTTTATGAAATTTATAGTATGATAATCTTTCTAATGATGTTATGTGTGTTTGTGTGTGTTTTCTAGGTTATGGAACATGCAAATTTGAATCTTGAATGTACGTGAAGCTAAGGATGATAGCTAGTATTGACTTGTAATATTTATGAATGTTATGTACTTTGGTTTCACATATATAATCTAATTGTATTGGTTTGGTATGTAAACGTTCTTTTTATATACTAT</genome_strand>
        <mrna_strand>GGGGTTTACGATAGATTTTCGAAGAAATGGTATACGAATTCTTTTGATATGTTGTTGGATGCGGTGTATATGTCGATGGTGAGATTGAAGCATTCAGATGTGGAGATTGTTGCTGCTGAGACAGGGTGGCCTTCGCAAGGAGAAGCGTATGAACCGCAATGTACTGTGGAAAATGCAGCTTCGTATAATGGTGGATTGATGAAGAAATATAATTCCGGGATCGGTACGCCATTGATGCCGCACAGGAAGATCGAGACCTACATTTTTTCATTGTTCAATGAGAACACCAAACCCGGATCCATCGCTGAGAGGAACTTCGGGTTGTTCCGACCCGATTTCACTCCGGTTTATGATGTCGGAGTTTTGAAAAGCAACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCACCCAACACCTTCATTGCCCCCACCAAAAACCGGTGGCGGAGGCAATAAAGGTCAACCAAAAACACCAGCAGAGAACAAAAAATTCTGCATGCCAAAGGTTGAGGCAACTGATGCACAACTACAATCCAACATTAACTATGTGTGCAGTCAGGGAGTTGACTGCACACCAATTCAAGTGGGTGGTTCCTGCTTTAAACCCAACACTATCCGATCTCACGCAGCCTTTGCCATGAACTCGTACTATCAAAAGGAAGGTCGAAACAACTTCAATTGTGACTTTGCTGGTACTGGTGTAGTCGCCTTCTCCGATCCAA....................................................................................................GTTATGGAACATGCAAATTTGAATCTTGAATGTACGTGAAGCTAAGGATGATAGCTAGTATTGACTTGNTATATTTATGAATGTTATGTACTTTGGTTTCACATATATAATCTAATTGTATTGGTTTGGTATGTAAACGTTCTTTTTATATACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E553270" ref_strand="+" ref_description="SGN-E553270 	[cTSB-3-N22]">
      <seq>ggggtttacgatagattttcgaagaaatggtatacgaattcttttgatatgttgttggatgcggtgtatatgtcgatggtgagattgaagcattcagatgtggagattgttgctgctgagacagggtggccttcgcaaggagaagcgtatgaaccgcaatgtactgtggaaaatgcagcttcgtataatggtggattgatgaagaaatataattccgggatcggtacgccattgatgccgcacaggaagatcgagacctacattttttcattgttcaatgagaacaccaaacccggatccatcgctgagaggaacttcgggttgttccgacccgatttcactccggtttatgatgtcggagttttgaaaagcaaccaggctcacccaacaccttcattgcccccaccaaaaaccggtggcggaggcaataaaggtcaaccaaaaacaccagcagagaacaaaaaattctgcatgccaaaggttgaggcaactgatgcacaactacaatccaacattaactatgtgtgcagtcagggagttgactgcacaccaattcaagtgggtggttcctgctttaaacccaacactatccgatctcacgcagcctttgccatgaactcgtactatcaaaaggaaggtcgaaacaacttcaattgtgactttgctggtactggtgtagtcgccttctccgatccaagttatggaacatgcaaatttgaatcttgaatgtacgtgaagctaaggatgatagctagtattgacttgtaatatttatgaatgttatgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="75805" stop="78810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76105" g_stop="76482" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76483" i_stop="78000" i_length="1518">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78001" g_stop="78319" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="697" r_length="319" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78320" i_stop="78419" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78420" g_stop="78510" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="788" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E553270" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76105" e_stop="76482"/>
          <exon e_start="78001" e_stop="78319"/>
          <exon e_start="78420" e_stop="78510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTTTACGATAGATTTTCGAAGAAATGGTATACGAATTCTTTTGATATGTTGTTGGATGCGGTGTATATGTCGATGGTGAGATTGAAGCATTCAGATGTGGAGATTGTTGCTGCTGAGACAGGGTGGCCTTCGCAAGGAGAAGCGTATGAACCGCAATGTACTGTGGAAAATGCAGCTTCGTATAATGGTGGATTGATGAAGAAATATAATTCCGGGATCGGTACGCCATTGATGCCGCACAGGAAGATCGAGACCTACATTTTTTCATTGTTCAATGAGAACACCAAACCCGGATCCATCGCTGAGAGGAACTTCGGGTTGTTCCGACCCGATTTCACTCCGGTTTATGATGTCGGAGTTTTGAAAAGCAACCAGGTAATTTCGAAAAATTAATACTTCCTACGCACTTTTACATTTTGAGATTTAAAACAAATCTATCATTTTAAAAAAATTGAAAATTTTATACGCAATTGTTCAATCAAAGTTAAATTATTTGATTTTTATAAAATAAAAATGTCACGTAAAATGGAATAGAGATAACAAAACAAAGTGGCTTAAACACATCTAAATTAATTGAGTACTATAATAGTATTGTTTTGTTATAAGCATAAGTAATTAAATGGAAATCTAATTAACTAGTAGATCAACTTTATTTAATTGAATCCATGAGGGGTATTTAAGTCATTTTGCTAATGTAATTATGATTATAATGGTACTGCTATAATTACAACAAGCTTTTTGTAAATAATTTCATTTTGTCTTTTGGTTTGAAGAATCTTTTTTTTCCAGTTGAGTACAGCTAGTTGTATTGCATTTTTTTCCACTCTAGAACCTAGATACATGGGAATATGTTTTCCATGTGGAGTCGTTTTGGTACTCGAATCCAATAATTTTTTTAATTTTGATTCAAGTGTTTTAATTTGACGATAGTATTAAACGTACACACTTTAAAATTATTATCATCTAATTAATAAACGTGGCATGGTCGAAAAGAAAAAAGTTGACACCTGTTGTAGTGGCCACCACATGTTATTACGTAATAGATTAATAAAAATAATTTCTTCATTGGATTCTCTTGCATTAAATAATTGTCATTTTTTCAGTGAACCAAAAAAAAAGTTTAACATGTCCAACGGCTACTTAATGAAACATGTGATGTAGTATTTACAAAATGAAAAAAGAAATAGATTTCATAAGCATCATCTTTTTTCTTTTTTTTAAAAAAAAAAGATTTCATAAGCATATCTTTAAATTTGAATCTTGTCTTCTTTGATTTTTGTTTTTTTACTTTATTCTCTCTTCTTTTTAATGTATTGCTTTCTCCTTTATGGTTCCACTAATTTAAAAATAGAAGTCGGTATTCGTAAGTGACGGATTTAGAATTTTCATAATGAGTTGTTAATGGTTATGGCTTAAACACATGACACGACCTTAGGAATTTTCGTAACCCTTTAATCGCTAGGTTGCATAGAGAATATATGATGGGTTTGGTTATTATCCATTATTTGATTCATTTTAGTTCAAGTAAACTTCATGTGATAATTATGTTAGCATTAGCGATCGAGCTAGAAATTCATATAAAAATATTCATTATTATTGAAATTTGAACTTGTAACTTAAGCGGCGGAGAGTTTGACCGTAGGAATAAATTGATTAACAGTTTTCTTGAGGAAGAGATCTAGAATGAACACTTTTTTCATTCGCTATACGCTAATTGAAGCTACTATTGATCTCTTTACTATCTAATATTTTTCACCTTTCTTATAAGAGATGCACCACCTTGCCTCTTACTAGAGTGTGTCACTACTTATGACCGATTAATCGATTTGACTTTGTTTAACTCATTCATTTGTCACCTCTAGTCGATAAGTTTTATAATTTTGATACTTACAGGCTCACCCAACACCTTCATTGCCCCCACCAAAAACCGGTGGCGGAGGCAATAAAGGTCAACCAAAAACACCAGCAGAGAACAAAAAATTCTGCATGCCAAAGGTTGAGGCAACTGATGCACAACTACAATCCAACATTAACTATGTGTGCAGTCAGGGAGTTGACTGCACACCAATTCAAGTGGGTGGTTCCTGCTTTAAACCCAACACTATCCGATCTCACGCAGCCTTTGCCATGAACTCGTACTATCAAAAGGAAGGTCGAAACAACTTCAATTGTGACTTTGCTGGTACTGGTGTAGTCGCCTTCTCCGATCCAAGTAAGGTTTTTTAAAACATGAAATTATATGATCTTTTTATGAAATTTATAGTATGATAATCTTTCTAATGATGTTATGTGTGTTTGTGTGTGTTTTCTAGGTTATGGAACATGCAAATTTGAATCTTGAATGTACGTGAAGCTAAGGATGATAGCTAGTATTGACTTGTAATATTTATGAATGTTATGTAC</genome_strand>
        <mrna_strand>GGGGTTTACGATAGATTTTCGAAGAAATGGTATACGAATTCTTTTGATATGTTGTTGGATGCGGTGTATATGTCGATGGTGAGATTGAAGCATTCAGATGTGGAGATTGTTGCTGCTGAGACAGGGTGGCCTTCGCAAGGAGAAGCGTATGAACCGCAATGTACTGTGGAAAATGCAGCTTCGTATAATGGTGGATTGATGAAGAAATATAATTCCGGGATCGGTACGCCATTGATGCCGCACAGGAAGATCGAGACCTACATTTTTTCATTGTTCAATGAGAACACCAAACCCGGATCCATCGCTGAGAGGAACTTCGGGTTGTTCCGACCCGATTTCACTCCGGTTTATGATGTCGGAGTTTTGAAAAGCAACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCACCCAACACCTTCATTGCCCCCACCAAAAACCGGTGGCGGAGGCAATAAAGGTCAACCAAAAACACCAGCAGAGAACAAAAAATTCTGCATGCCAAAGGTTGAGGCAACTGATGCACAACTACAATCCAACATTAACTATGTGTGCAGTCAGGGAGTTGACTGCACACCAATTCAAGTGGGTGGTTCCTGCTTTAAACCCAACACTATCCGATCTCACGCAGCCTTTGCCATGAACTCGTACTATCAAAAGGAAGGTCGAAACAACTTCAATTGTGACTTTGCTGGTACTGGTGTAGTCGCCTTCTCCGATCCAA....................................................................................................GTTATGGAACATGCAAATTTGAATCTTGAATGTACGTGAAGCTAAGGATGATAGCTAGTATTGACTTGTAATATTTATGAATGTTATGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E553115" ref_strand="+" ref_description="SGN-E553115 	[cTSB-1-G14]">
      <seq>ggtgtatatgtcgatggtgagattgaagcattcagatgtggagattgttgctgctgagacagggtggccttcgcaaggagaagcgtatgaaccgcaatgtactgtggaaaatgcagcttcgtataatggtggattgatgaagaaatataattccgggatcggtacgccattgatgccgcacaggaagatcgagacctacattttttcattgttcaatgagaacaccaaacccggatccatcgctgagaggaacttcgggttgttccgacccgatttcactccggtttatgatgtcggagttttgaaaagcaaccaggctcacccaacaccttcattgcccccaccaaaaaccggtggcggaggcaataaaggtcaaccaaaaacaccagcagagaacaaaaaattctgcatgccaaaggttgaggcaactgatgcacaactacaatccaacattaactatgtgtgcagtcagggagttgactgcacaccaattcaagtgggtggttcctgctttaaacccaacactatccgatctcacgcagcctttgccatgaactcgtactatcaaaaggaaggtcgaaacaacttcaattgtgactttgctggtactggtgtagtcgccttctccgatccaagttatggaacatgcaaatttgaatcttgaatgtacgtgaagctaaggatgatagctagtattgacttgtaatatttatgaatgttatgtactttggtttcacatatataatctaattgtattggtttggtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="75867" stop="78850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76167" g_stop="76482" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76483" i_stop="78000" i_length="1518">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78001" g_stop="78319" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="635" r_length="319" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78320" i_stop="78419" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78420" g_stop="78549" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="765" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="766" polyA_stop="780"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E553115" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76167" e_stop="76482"/>
          <exon e_start="78001" e_stop="78319"/>
          <exon e_start="78420" e_stop="78549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTATATGTCGATGGTGAGATTGAAGCATTCAGATGTGGAGATTGTTGCTGCTGAGACAGGGTGGCCTTCGCAAGGAGAAGCGTATGAACCGCAATGTACTGTGGAAAATGCAGCTTCGTATAATGGTGGATTGATGAAGAAATATAATTCCGGGATCGGTACGCCATTGATGCCGCACAGGAAGATCGAGACCTACATTTTTTCATTGTTCAATGAGAACACCAAACCCGGATCCATCGCTGAGAGGAACTTCGGGTTGTTCCGACCCGATTTCACTCCGGTTTATGATGTCGGAGTTTTGAAAAGCAACCAGGTAATTTCGAAAAATTAATACTTCCTACGCACTTTTACATTTTGAGATTTAAAACAAATCTATCATTTTAAAAAAATTGAAAATTTTATACGCAATTGTTCAATCAAAGTTAAATTATTTGATTTTTATAAAATAAAAATGTCACGTAAAATGGAATAGAGATAACAAAACAAAGTGGCTTAAACACATCTAAATTAATTGAGTACTATAATAGTATTGTTTTGTTATAAGCATAAGTAATTAAATGGAAATCTAATTAACTAGTAGATCAACTTTATTTAATTGAATCCATGAGGGGTATTTAAGTCATTTTGCTAATGTAATTATGATTATAATGGTACTGCTATAATTACAACAAGCTTTTTGTAAATAATTTCATTTTGTCTTTTGGTTTGAAGAATCTTTTTTTTCCAGTTGAGTACAGCTAGTTGTATTGCATTTTTTTCCACTCTAGAACCTAGATACATGGGAATATGTTTTCCATGTGGAGTCGTTTTGGTACTCGAATCCAATAATTTTTTTAATTTTGATTCAAGTGTTTTAATTTGACGATAGTATTAAACGTACACACTTTAAAATTATTATCATCTAATTAATAAACGTGGCATGGTCGAAAAGAAAAAAGTTGACACCTGTTGTAGTGGCCACCACATGTTATTACGTAATAGATTAATAAAAATAATTTCTTCATTGGATTCTCTTGCATTAAATAATTGTCATTTTTTCAGTGAACCAAAAAAAAAGTTTAACATGTCCAACGGCTACTTAATGAAACATGTGATGTAGTATTTACAAAATGAAAAAAGAAATAGATTTCATAAGCATCATCTTTTTTCTTTTTTTTAAAAAAAAAAGATTTCATAAGCATATCTTTAAATTTGAATCTTGTCTTCTTTGATTTTTGTTTTTTTACTTTATTCTCTCTTCTTTTTAATGTATTGCTTTCTCCTTTATGGTTCCACTAATTTAAAAATAGAAGTCGGTATTCGTAAGTGACGGATTTAGAATTTTCATAATGAGTTGTTAATGGTTATGGCTTAAACACATGACACGACCTTAGGAATTTTCGTAACCCTTTAATCGCTAGGTTGCATAGAGAATATATGATGGGTTTGGTTATTATCCATTATTTGATTCATTTTAGTTCAAGTAAACTTCATGTGATAATTATGTTAGCATTAGCGATCGAGCTAGAAATTCATATAAAAATATTCATTATTATTGAAATTTGAACTTGTAACTTAAGCGGCGGAGAGTTTGACCGTAGGAATAAATTGATTAACAGTTTTCTTGAGGAAGAGATCTAGAATGAACACTTTTTTCATTCGCTATACGCTAATTGAAGCTACTATTGATCTCTTTACTATCTAATATTTTTCACCTTTCTTATAAGAGATGCACCACCTTGCCTCTTACTAGAGTGTGTCACTACTTATGACCGATTAATCGATTTGACTTTGTTTAACTCATTCATTTGTCACCTCTAGTCGATAAGTTTTATAATTTTGATACTTACAGGCTCACCCAACACCTTCATTGCCCCCACCAAAAACCGGTGGCGGAGGCAATAAAGGTCAACCAAAAACACCAGCAGAGAACAAAAAATTCTGCATGCCAAAGGTTGAGGCAACTGATGCACAACTACAATCCAACATTAACTATGTGTGCAGTCAGGGAGTTGACTGCACACCAATTCAAGTGGGTGGTTCCTGCTTTAAACCCAACACTATCCGATCTCACGCAGCCTTTGCCATGAACTCGTACTATCAAAAGGAAGGTCGAAACAACTTCAATTGTGACTTTGCTGGTACTGGTGTAGTCGCCTTCTCCGATCCAAGTAAGGTTTTTTAAAACATGAAATTATATGATCTTTTTATGAAATTTATAGTATGATAATCTTTCTAATGATGTTATGTGTGTTTGTGTGTGTTTTCTAGGTTATGGAACATGCAAATTTGAATCTTGAATGTACGTGAAGCTAAGGATGATAGCTAGTATTGACTTGTAATATTTATGAATGTTATGTACTTTGGTTTCACATATATAATCTAATTGTATTGGTTTGGT</genome_strand>
        <mrna_strand>GGTGTATATGTCGATGGTGAGATTGAAGCATTCAGATGTGGAGATTGTTGCTGCTGAGACAGGGTGGCCTTCGCAAGGAGAAGCGTATGAACCGCAATGTACTGTGGAAAATGCAGCTTCGTATAATGGTGGATTGATGAAGAAATATAATTCCGGGATCGGTACGCCATTGATGCCGCACAGGAAGATCGAGACCTACATTTTTTCATTGTTCAATGAGAACACCAAACCCGGATCCATCGCTGAGAGGAACTTCGGGTTGTTCCGACCCGATTTCACTCCGGTTTATGATGTCGGAGTTTTGAAAAGCAACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCACCCAACACCTTCATTGCCCCCACCAAAAACCGGTGGCGGAGGCAATAAAGGTCAACCAAAAACACCAGCAGAGAACAAAAAATTCTGCATGCCAAAGGTTGAGGCAACTGATGCACAACTACAATCCAACATTAACTATGTGTGCAGTCAGGGAGTTGACTGCACACCAATTCAAGTGGGTGGTTCCTGCTTTAAACCCAACACTATCCGATCTCACGCAGCCTTTGCCATGAACTCGTACTATCAAAAGGAAGGTCGAAACAACTTCAATTGTGACTTTGCTGGTACTGGTGTAGTCGCCTTCTCCGATCCAA....................................................................................................GTTATGGAACATGCAAATTTGAATCTTGAATGTACGTGAAGCTAAGGATGATAGCTAGTATTGACTTGTAATATTTATGAATGTTATGTACTTTGGTTTCACATATATAATCTAATTGTATTGGTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E577992" ref_strand="-" ref_description="SGN-E577992 	[LE08CE03]">
      <seq>cgcaaggagaagcgtatgaaccgcaatgtactgtggaaaatgcagcttcgtataatggtggattgatgaagaaatataattccgggatcggtacgccattgatgccgcacaggaagatcgagacctacattttttcattgttcaatgagaacaccaaacccggatccatcgctgagaggaacttcgggttgttccgacccgatttcactccggtttatgatgtcggagttttgaaaagcaaccaggctcacccaacaccttcattgcccccaccaaaaaccggtggcggaggcaataaaggtcaaccaaaaacaccagcggagaacaaaaaattctgcatgccaaaggttgaggcaactgatgcacaactacaatccaacattaactatgtgtgcagtcagggagttgactgcacaccaattcaagtgggtggttcctgctttaaacccaacactatccgatctcacgcagcctttgccatgaactcgtactatcaaaaggaaggtcgaaacaacttcaattgtgactttgctggtactggtgtagtcgccttctccgatccaagttatggaacatgcaaatttgaatcttgaatgtacgtgaaagctgaggatgatagctagtaatatttatgaatgttatgtactttggttcacatatataatctaattgtattggtttggtatgtaaacgttctttttatatactatgtcatttaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="75938" stop="78887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76238" g_stop="76482" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76483" i_stop="78000" i_length="1518">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78001" g_stop="78319" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="564" r_length="319" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78320" i_stop="78419" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78420" g_stop="78587" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="722" r_length="158" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E577992" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577992" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76238" e_stop="76482"/>
          <exon e_start="78001" e_stop="78319"/>
          <exon e_start="78420" e_stop="78587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAGGAGAAGCGTATGAACCGCAATGTACTGTGGAAAATGCAGCTTCGTATAATGGTGGATTGATGAAGAAATATAATTCCGGGATCGGTACGCCATTGATGCCGCACAGGAAGATCGAGACCTACATTTTTTCATTGTTCAATGAGAACACCAAACCCGGATCCATCGCTGAGAGGAACTTCGGGTTGTTCCGACCCGATTTCACTCCGGTTTATGATGTCGGAGTTTTGAAAAGCAACCAGGTAATTTCGAAAAATTAATACTTCCTACGCACTTTTACATTTTGAGATTTAAAACAAATCTATCATTTTAAAAAAATTGAAAATTTTATACGCAATTGTTCAATCAAAGTTAAATTATTTGATTTTTATAAAATAAAAATGTCACGTAAAATGGAATAGAGATAACAAAACAAAGTGGCTTAAACACATCTAAATTAATTGAGTACTATAATAGTATTGTTTTGTTATAAGCATAAGTAATTAAATGGAAATCTAATTAACTAGTAGATCAACTTTATTTAATTGAATCCATGAGGGGTATTTAAGTCATTTTGCTAATGTAATTATGATTATAATGGTACTGCTATAATTACAACAAGCTTTTTGTAAATAATTTCATTTTGTCTTTTGGTTTGAAGAATCTTTTTTTTCCAGTTGAGTACAGCTAGTTGTATTGCATTTTTTTCCACTCTAGAACCTAGATACATGGGAATATGTTTTCCATGTGGAGTCGTTTTGGTACTCGAATCCAATAATTTTTTTAATTTTGATTCAAGTGTTTTAATTTGACGATAGTATTAAACGTACACACTTTAAAATTATTATCATCTAATTAATAAACGTGGCATGGTCGAAAAGAAAAAAGTTGACACCTGTTGTAGTGGCCACCACATGTTATTACGTAATAGATTAATAAAAATAATTTCTTCATTGGATTCTCTTGCATTAAATAATTGTCATTTTTTCAGTGAACCAAAAAAAAAGTTTAACATGTCCAACGGCTACTTAATGAAACATGTGATGTAGTATTTACAAAATGAAAAAAGAAATAGATTTCATAAGCATCATCTTTTTTCTTTTTTTTAAAAAAAAAAGATTTCATAAGCATATCTTTAAATTTGAATCTTGTCTTCTTTGATTTTTGTTTTTTTACTTTATTCTCTCTTCTTTTTAATGTATTGCTTTCTCCTTTATGGTTCCACTAATTTAAAAATAGAAGTCGGTATTCGTAAGTGACGGATTTAGAATTTTCATAATGAGTTGTTAATGGTTATGGCTTAAACACATGACACGACCTTAGGAATTTTCGTAACCCTTTAATCGCTAGGTTGCATAGAGAATATATGATGGGTTTGGTTATTATCCATTATTTGATTCATTTTAGTTCAAGTAAACTTCATGTGATAATTATGTTAGCATTAGCGATCGAGCTAGAAATTCATATAAAAATATTCATTATTATTGAAATTTGAACTTGTAACTTAAGCGGCGGAGAGTTTGACCGTAGGAATAAATTGATTAACAGTTTTCTTGAGGAAGAGATCTAGAATGAACACTTTTTTCATTCGCTATACGCTAATTGAAGCTACTATTGATCTCTTTACTATCTAATATTTTTCACCTTTCTTATAAGAGATGCACCACCTTGCCTCTTACTAGAGTGTGTCACTACTTATGACCGATTAATCGATTTGACTTTGTTTAACTCATTCATTTGTCACCTCTAGTCGATAAGTTTTATAATTTTGATACTTACAGGCTCACCCAACACCTTCATTGCCCCCACCAAAAACCGGTGGCGGAGGCAATAAAGGTCAACCAAAAACACCAGCAGAGAACAAAAAATTCTGCATGCCAAAGGTTGAGGCAACTGATGCACAACTACAATCCAACATTAACTATGTGTGCAGTCAGGGAGTTGACTGCACACCAATTCAAGTGGGTGGTTCCTGCTTTAAACCCAACACTATCCGATCTCACGCAGCCTTTGCCATGAACTCGTACTATCAAAAGGAAGGTCGAAACAACTTCAATTGTGACTTTGCTGGTACTGGTGTAGTCGCCTTCTCCGATCCAAGTAAGGTTTTTTAAAACATGAAATTATATGATCTTTTTATGAAATTTATAGTATGATAATCTTTCTAATGATGTTATGTGTGTTTGTGTGTGTTTTCTAGGTTATGGAACATGCAAATTTGAATCTTGAATGTACGTG-AAGCTAAGGATGATAGCTAGTATTGACTTGTAATATTTATGAATGTTATGTACTTTGGTTTCACATATATAATCTAATTGTATTGGTTTGGTATGTAAACGTTCTTTTTATATACTATGTCATTTAATGT</genome_strand>
        <mrna_strand>CGCAAGGAGAAGCGTATGAACCGCAATGTACTGTGGAAAATGCAGCTTCGTATAATGGTGGATTGATGAAGAAATATAATTCCGGGATCGGTACGCCATTGATGCCGCACAGGAAGATCGAGACCTACATTTTTTCATTGTTCAATGAGAACACCAAACCCGGATCCATCGCTGAGAGGAACTTCGGGTTGTTCCGACCCGATTTCACTCCGGTTTATGATGTCGGAGTTTTGAAAAGCAACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCACCCAACACCTTCATTGCCCCCACCAAAAACCGGTGGCGGAGGCAATAAAGGTCAACCAAAAACACCAGCGGAGAACAAAAAATTCTGCATGCCAAAGGTTGAGGCAACTGATGCACAACTACAATCCAACATTAACTATGTGTGCAGTCAGGGAGTTGACTGCACACCAATTCAAGTGGGTGGTTCCTGCTTTAAACCCAACACTATCCGATCTCACGCAGCCTTTGCCATGAACTCGTACTATCAAAAGGAAGGTCGAAACAACTTCAATTGTGACTTTGCTGGTACTGGTGTAGTCGCCTTCTCCGATCCAA....................................................................................................GTTATGGAACATGCAAATTTGAATCTTGAATGTACGTGAAAGCTGAGGATGATAGC------T-A---GTAATATTTATGAATGTTATGTACTTTGG-TTCACATATATAATCTAATTGTATTGGTTTGGTATGTAAACGTTCTTTTTATATACTATGTCATTTAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E354455" ref_strand="+" ref_description="SGN-E354455 	[cTOS-17-B4]">
      <seq>accttcattgcccccaccaaaaaccggtggcggaggcaataaaggtcaaccaaaaacaccagcagagaacaaaaaattctgcatgccaaaggttgaggcaactgatgcacaactacaatccaacattaactatgtgtgcagtcagggagttgactgcacaccaattcaagtgggtggttcctgctttaaacccaacactatccgatctcacgcagcctttgccatgaactcgtactatcaaaaggaaggtcgaaacaacttcaattgtgactttgctggtactggtgtagtcgccttctccgatccaagttatggaacatgcaaatttgaatcttgaatgtacgtgaagctaaggatgatagctagtattgacttgtaatatttatgaatgttatgtactttggtttcacatatataatctaattgtattggtttggtatgtaaacgttctttttatatactatgtcatttaatgtgcctcatttattaatttctcttttccattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="77712" stop="78916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78012" g_stop="78319" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78320" i_stop="78419" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78420" g_stop="78618" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="507" r_length="199" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E354455" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78012" e_stop="78319"/>
          <exon e_start="78420" e_stop="78618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTCATTGCCCCCACCAAAAACCGGTGGCGGAGGCAATAAAGGTCAACCAAAAACACCAGCAGAGAACAAAAAATTCTGCATGCCAAAGGTTGAGGCAACTGATGCACAACTACAATCCAACATTAACTATGTGTGCAGTCAGGGAGTTGACTGCACACCAATTCAAGTGGGTGGTTCCTGCTTTAAACCCAACACTATCCGATCTCACGCAGCCTTTGCCATGAACTCGTACTATCAAAAGGAAGGTCGAAACAACTTCAATTGTGACTTTGCTGGTACTGGTGTAGTCGCCTTCTCCGATCCAAGTAAGGTTTTTTAAAACATGAAATTATATGATCTTTTTATGAAATTTATAGTATGATAATCTTTCTAATGATGTTATGTGTGTTTGTGTGTGTTTTCTAGGTTATGGAACATGCAAATTTGAATCTTGAATGTACGTGAAGCTAAGGATGATAGCTAGTATTGACTTGTAATATTTATGAATGTTATGTACTTTGGTTTCACATATATAATCTAATTGTATTGGTTTGGTATGTAAACGTTCTTTTTATATACTATGTCATTTAATGTGCCTCATTTATTAATTTCTCTTTTCCATTTG</genome_strand>
        <mrna_strand>ACCTTCATTGCCCCCACCAAAAACCGGTGGCGGAGGCAATAAAGGTCAACCAAAAACACCAGCAGAGAACAAAAAATTCTGCATGCCAAAGGTTGAGGCAACTGATGCACAACTACAATCCAACATTAACTATGTGTGCAGTCAGGGAGTTGACTGCACACCAATTCAAGTGGGTGGTTCCTGCTTTAAACCCAACACTATCCGATCTCACGCAGCCTTTGCCATGAACTCGTACTATCAAAAGGAAGGTCGAAACAACTTCAATTGTGACTTTGCTGGTACTGGTGTAGTCGCCTTCTCCGATCCAA....................................................................................................GTTATGGAACATGCAAATTTGAATCTTGAATGTACGTGAAGCTAAGGATGATAGCTAGTATTGACTTGTAATATTTATGAATGTTATGTACTTTGGTTTCACATATATAATCTAATTGTATTGGTTTGGTATGTAAACGTTCTTTTTATATACTATGTCATTTAATGTGCCTCATTTATTAATTTCTCTTTTCCATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E235477" ref_strand="+" ref_description="SGN-E235477 	[cLED-11-A12]">
      <seq>ccaaaaaccggtggcggaggcaataaaggtcaaccaaaaacaccagcagagaacaaaaaattctgcatgccaaaggttgaggcaactgatgcacaactacaatccaacattaactatgtgtgcagtcagggagttgactgcacaccaattcaagtgggtggttcctgctttaaacccaacactatccgatctcacgcagcctttgccatgaactcgtactatcaaaaggaaggtcgaaacaacttcaattgtgactttgctggtactggtgtagtcgccttctccgatccaagttatggaacatgcaaatttgaatcttgaatgtacgtgaagctaaggatgatagctagtattgacttgtaatatttatgaatgttatgtactttggtttcacatatataatctaattgtattggtttggtatgtaaacgttctttttatatactatgtcatttaatgtgcctcatttattaatttctcttttccatttgttttcaattttatcaagtcatcttaaatatagaaaaatacatatttaaaaataattactaattttagcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="77728" stop="78988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78028" g_stop="78319" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78320" i_stop="78419" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78420" g_stop="78688" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="561" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E235477" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78028" e_stop="78319"/>
          <exon e_start="78420" e_stop="78688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAACCGGTGGCGGAGGCAATAAAGGTCAACCAAAAACACCAGCAGAGAACAAAAAATTCTGCATGCCAAAGGTTGAGGCAACTGATGCACAACTACAATCCAACATTAACTATGTGTGCAGTCAGGGAGTTGACTGCACACCAATTCAAGTGGGTGGTTCCTGCTTTAAACCCAACACTATCCGATCTCACGCAGCCTTTGCCATGAACTCGTACTATCAAAAGGAAGGTCGAAACAACTTCAATTGTGACTTTGCTGGTACTGGTGTAGTCGCCTTCTCCGATCCAAGTAAGGTTTTTTAAAACATGAAATTATATGATCTTTTTATGAAATTTATAGTATGATAATCTTTCTAATGATGTTATGTGTGTTTGTGTGTGTTTTCTAGGTTATGGAACATGCAAATTTGAATCTTGAATGTACGTGAAGCTAAGGATGATAGCTAGTATTGACTTGTAATATTTATGAATGTTATGTACTTTGGTTTCACATATATAATCTAATTGTATTGGTTTGGTATGTAAACGTTCTTTTTATATACTATGTCATTTAATGTGCCTCATTTATTAATTTCTCTTTTCCATTTGTTTTCAATTTTATCAAGTCATCTTAAATATAGAAAAATACATATTTAAAAATAATTACTAATTTTAGCGA</genome_strand>
        <mrna_strand>CCAAAAACCGGTGGCGGAGGCAATAAAGGTCAACCAAAAACACCAGCAGAGAACAAAAAATTCTGCATGCCAAAGGTTGAGGCAACTGATGCACAACTACAATCCAACATTAACTATGTGTGCAGTCAGGGAGTTGACTGCACACCAATTCAAGTGGGTGGTTCCTGCTTTAAACCCAACACTATCCGATCTCACGCAGCCTTTGCCATGAACTCGTACTATCAAAAGGAAGGTCGAAACAACTTCAATTGTGACTTTGCTGGTACTGGTGTAGTCGCCTTCTCCGATCCAA....................................................................................................GTTATGGAACATGCAAATTTGAATCTTGAATGTACGTGAAGCTAAGGATGATAGCTAGTATTGACTTGTAATATTTATGAATGTTATGTACTTTGGTTTCACATATATAATCTAATTGTATTGGTTTGGTATGTAAACGTTCTTTTTATATACTATGTCATTTAATGTGCCTCATTTATTAATTTCTCTTTTCCATTTGTTTTCAATTTTATCAAGTCATCTTAAATATAGAAAAATACATATTTAAAAATAATTACTAATTTTAGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E239703" ref_strand="+" ref_description="SGN-E239703 	[cLED-33-A3]">
      <seq>ccaaaaaccggtggcggaggcaataaaggtcaaccaaaaacaccagcagagaacaaaaaattctgcatgccaaaggttgaggcaactgatgcacaactacaatccaacattaactatgtgtgcagtcagggagttgactgcacaccaattcaagtgggtggttcctgctttaaacccaacactatccgatctcacgcagcctttgccatgaactcgtactatcaaaaggaaggtcgaaacaacttcaattgtgactttgctggtactggtgtagtcgccttctccgatccaagttatggaacatgcatatttgaatcttgaatgtacgtgaagctaaggatgatagctagtattgacttgcaatatttatgaatgttatgtactttggtttcacatatataatctaattgtattggtttggtatgtaaacgttctttttatatactatgtcattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="77728" stop="78883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78028" g_stop="78319" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78320" i_stop="78419" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78420" g_stop="78583" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="456" r_length="164" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E239703" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78028" e_stop="78319"/>
          <exon e_start="78420" e_stop="78583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAACCGGTGGCGGAGGCAATAAAGGTCAACCAAAAACACCAGCAGAGAACAAAAAATTCTGCATGCCAAAGGTTGAGGCAACTGATGCACAACTACAATCCAACATTAACTATGTGTGCAGTCAGGGAGTTGACTGCACACCAATTCAAGTGGGTGGTTCCTGCTTTAAACCCAACACTATCCGATCTCACGCAGCCTTTGCCATGAACTCGTACTATCAAAAGGAAGGTCGAAACAACTTCAATTGTGACTTTGCTGGTACTGGTGTAGTCGCCTTCTCCGATCCAAGTAAGGTTTTTTAAAACATGAAATTATATGATCTTTTTATGAAATTTATAGTATGATAATCTTTCTAATGATGTTATGTGTGTTTGTGTGTGTTTTCTAGGTTATGGAACATGCAAATTTGAATCTTGAATGTACGTGAAGCTAAGGATGATAGCTAGTATTGACTTGTAATATTTATGAATGTTATGTACTTTGGTTTCACATATATAATCTAATTGTATTGGTTTGGTATGTAAACGTTCTTTTTATATACTATGTCATTTA</genome_strand>
        <mrna_strand>CCAAAAACCGGTGGCGGAGGCAATAAAGGTCAACCAAAAACACCAGCAGAGAACAAAAAATTCTGCATGCCAAAGGTTGAGGCAACTGATGCACAACTACAATCCAACATTAACTATGTGTGCAGTCAGGGAGTTGACTGCACACCAATTCAAGTGGGTGGTTCCTGCTTTAAACCCAACACTATCCGATCTCACGCAGCCTTTGCCATGAACTCGTACTATCAAAAGGAAGGTCGAAACAACTTCAATTGTGACTTTGCTGGTACTGGTGTAGTCGCCTTCTCCGATCCAA....................................................................................................GTTATGGAACATGCATATTTGAATCTTGAATGTACGTGAAGCTAAGGATGATAGCTAGTATTGACTTGCAATATTTATGAATGTTATGTACTTTGGTTTCACATATATAATCTAATTGTATTGGTTTGGTATGTAAACGTTCTTTTTATATACTATGTCATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E233453" ref_strand="+" ref_description="SGN-E233453 	[cLED-9-B4]">
      <seq>ccaaaaaccggtggcggaggcaataaaggtcaaccaaaaacaccagcagagaacaaaaaattctgcatgccaaaggttgaggcaactgatgcacaactacaatccaacattaactatgtgtgcagtcagggagttgactgcacaccaattcaagtgggtggttcctgctttaaacccaacactatccgatctcacgcagcctttgccatgaactcgtactatcaaaaggaaggtcgaaacaacttcaattgtgactttgctggtactggtgtagtcgccttctccgatccaagttatggaacatgcaaatttgaatcttgaatgtacgtgaagctaaggatgatagctagtattgacttgtaatatttatgaatgttatgtactttggtttcacatatataatctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="77728" stop="78834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78028" g_stop="78319" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78320" i_stop="78419" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78420" g_stop="78534" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="407" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E233453" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78028" e_stop="78319"/>
          <exon e_start="78420" e_stop="78534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAACCGGTGGCGGAGGCAATAAAGGTCAACCAAAAACACCAGCAGAGAACAAAAAATTCTGCATGCCAAAGGTTGAGGCAACTGATGCACAACTACAATCCAACATTAACTATGTGTGCAGTCAGGGAGTTGACTGCACACCAATTCAAGTGGGTGGTTCCTGCTTTAAACCCAACACTATCCGATCTCACGCAGCCTTTGCCATGAACTCGTACTATCAAAAGGAAGGTCGAAACAACTTCAATTGTGACTTTGCTGGTACTGGTGTAGTCGCCTTCTCCGATCCAAGTAAGGTTTTTTAAAACATGAAATTATATGATCTTTTTATGAAATTTATAGTATGATAATCTTTCTAATGATGTTATGTGTGTTTGTGTGTGTTTTCTAGGTTATGGAACATGCAAATTTGAATCTTGAATGTACGTGAAGCTAAGGATGATAGCTAGTATTGACTTGTAATATTTATGAATGTTATGTACTTTGGTTTCACATATATAATCTAA</genome_strand>
        <mrna_strand>CCAAAAACCGGTGGCGGAGGCAATAAAGGTCAACCAAAAACACCAGCAGAGAACAAAAAATTCTGCATGCCAAAGGTTGAGGCAACTGATGCACAACTACAATCCAACATTAACTATGTGTGCAGTCAGGGAGTTGACTGCACACCAATTCAAGTGGGTGGTTCCTGCTTTAAACCCAACACTATCCGATCTCACGCAGCCTTTGCCATGAACTCGTACTATCAAAAGGAAGGTCGAAACAACTTCAATTGTGACTTTGCTGGTACTGGTGTAGTCGCCTTCTCCGATCCAA....................................................................................................GTTATGGAACATGCAAATTTGAATCTTGAATGTACGTGAAGCTAAGGATGATAGCTAGTATTGACTTGTAATATTTATGAATGTTATGTACTTTGGTTTCACATATATAATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E210553" ref_strand="+" ref_description="SGN-E210553 	[cLEC-35-F14]">
      <seq>aactgtgaggacagagcaggaatatgatccagaaatgcccccagaacttgcagcagcagctggtatgaaagacattccatcggaaaatttgaatggtaaaattgatggaactacaaatgacctaggaagaggatcaatgcgcatgagaccaccactaattgtgtgccaggatgatgaccaatacacagggaatgacaagaatgaagggcaattggacaatattccttcaacagaggattttagaggtgatgcaagaagaggacccctgcaggaacatgttcaagaatctgatggttttcagaatccttataagagccacaggcgagaggccaatgctaggagaacacagtttataaaccctataggtgatcatttaaccaaaggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="84455" stop="86035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84755" g_stop="84773" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84774" i_stop="84884" i_length="111">
            <donor d_prob="0.809" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84885" g_stop="85022" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="157" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85023" i_stop="85504" i_length="482">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85505" g_stop="85735" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="388" r_length="231" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E210553" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84755" e_stop="84773"/>
          <exon e_start="84885" e_stop="85022"/>
          <exon e_start="85505" e_stop="85735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGTGAGGACAGAGCAGGTAATAGAATGCTTATGCAAATGAAGATACTATCTTCAGCAAGACGTGCATGTCTAATATGCTTATCATACTTCAAATTGTTCTTATTCTTATTTGGTATTCATTTTTTAGGAATATGATCCAGAAATGCCCCCAGAACTTGCAGCAGCAGCTGGTATGAAAGACATTCCATCGGAAAATTTGAATGGTAAAATTGATGGAACTACAAATGACCTAGGAAGAGGATCAATGCGCATGAGACCACCACTAGTATGTATTTTGAACTCAAGCCTTACGTTTAGGAACTTTATTGGTATTTTGTGGGCCTAACATTCTAACTTGACGAGTGGGTGAAGTATGCTTACTATTTCATCTTTATTTATAATATAAGTAATGATAACAAAGTTTCGGATATTAGTTTTCGTACTATTTACTCACTCATGTGATGTTCTACTAGCCCACTGGAAGACCGATACAAGTTGAAACTGGTTCTGGTGATCGCCTACCATCAATTGATAACCGACCACCACGACAGCGTGACTCGGATGCAATTATTGAAGTGAGTGATCTGACCCTGTCTTTTTCCAAATTCGAAAAGGAGGTGTCATTTAAAATAGAAAAGAAGCATAATTCATGCTGAGATCACTCGGCATTATTGTTTCCCTAATTTTTGCATGTCCTAAGAAGACTGCTGCTTCTTATTTTCTAGTTTTGTTTTATTTATCTTTGTTGACATTTTCTTGGGTGAACAGATTGTGTGCCAGGATGATGACCAATACACAGGGAATGACAAGAATGAAGGGCAATTGGACAATATTCCTTCAACAGAGGATTTTAGAGGTGATGCAAGAAGAGGACCCCTGCAGGAACATGTTCAAGAATCTGATGGTTTTCAGAATCCTTATAAGAGCCACAGGCGAGAGGCCAATGCTAGGAGAACACAGTTTATAAACCCTATAGGTGATCATTTAACCAAAGGAGAT</genome_strand>
        <mrna_strand>AACTGTGAGGACAGAGCAG...............................................................................................................GAATATGATCCAGAAATGCCCCCAGAACTTGCAGCAGCAGCTGGTATGAAAGACATTCCATCGGAAAATTTGAATGGTAAAATTGATGGAACTACAAATGACCTAGGAAGAGGATCAATGCGCATGAGACCACCACTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGTGCCAGGATGATGACCAATACACAGGGAATGACAAGAATGAAGGGCAATTGGACAATATTCCTTCAACAGAGGATTTTAGAGGTGATGCAAGAAGAGGACCCCTGCAGGAACATGTTCAAGAATCTGATGGTTTTCAGAATCCTTATAAGAGCCACAGGCGAGAGGCCAATGCTAGGAGAACACAGTTTATAAACCCTATAGGTGATCATTTAACCAAAGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E392108" ref_strand="+" ref_description="SGN-E392108 	[TUS-24-F16]">
      <seq>agaggtgaaattaagtagggaacacattgacaaggaagaaacattccattcccatggagaaactatggttcgcagaaagcgagagagagatgatgcctcagatcaccgaaagagagatgagctgatgagactacgagaagatgagcagctctatatcaggcacaaagaagatggagtgtttcagagggagaggaatgatagacagcgagaacgtgaggagtggtataggctcaaacagtcacatgaagagacactaccaaaaagggagagagaagaaataaggggcgggatgcgggctggacgtgttccggaagaaaaagcttgggctgctcaatctagagggaaagatgagtatagaaactctgatcagcactcgaaagatgtgaggcatgctgaccatattagaaggagggatcgtgttgaaaatgaaagtccatcgaggctgaggacacgtgaggatgaaagaagagcaaggcatgacagggtgaactcacgtgaagatcgtgctcctattgcttcagataactccagggttaatgagaaaagacataaagattatttgaagaagggtaaagaatttgagagtgatcacaactccccaatggctttgaacatgaacgaagatgaactgaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="88552" stop="89787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88852" g_stop="89487" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E392108" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88852" e_stop="89487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGTGAAATTAAGTAGGGAACACATTGACAAGGAAGAAACATTCCATTCCCATGGAGAAACTATGGTTCGCAGAAAGCGAGAGAGAGATGATGCCTCAGATCACCGAAAGAGAGATGAGCTGATGAGACTACGAGAAGATGAGCAGCTCTATATCAGGCACAAAGAAGATGGAGTGTTTCAGAGGGAGAGGAATGATAGACAGCGAGAACGTGAGGAGTGGTATAGGCTCAAACAGTCACATGAAGAGACACTACCAAAAAGGGAGAGAGAAGAAATAAGGGGCGGGATGCGGGCTGGACGTGTTCCGGAAGAAAAAGCTTGGGCTGCTCAATCTAGAGGGAAAGATGAGTATAGAAACTCTGATCAGCACTCGAAAGATGTGAGGCATGCTGACCATATTAGAAGGAGGGATCGTGTTGAAAATGAAAGTCCATCGAGGCTGAGGACACGTGAGGATGAAAGAAGAGCAAGGCATGACAGGGTGAACTCACGTGAAGATCGTGCTCCTATTGCTTCAGATAACTCCAGGGTTAATGAGAAAAGACATAAAGATTATTTGAAGAAGGGTAAAGAATTTGAGAGTGATCACAACTCCCAGATGGCTTTGAACATGAACGAAGATGAACTGAATGG</genome_strand>
        <mrna_strand>AGAGGTGAAATTAAGTAGGGAACACATTGACAAGGAAGAAACATTCCATTCCCATGGAGAAACTATGGTTCGCAGAAAGCGAGAGAGAGATGATGCCTCAGATCACCGAAAGAGAGATGAGCTGATGAGACTACGAGAAGATGAGCAGCTCTATATCAGGCACAAAGAAGATGGAGTGTTTCAGAGGGAGAGGAATGATAGACAGCGAGAACGTGAGGAGTGGTATAGGCTCAAACAGTCACATGAAGAGACACTACCAAAAAGGGAGAGAGAAGAAATAAGGGGCGGGATGCGGGCTGGACGTGTTCCGGAAGAAAAAGCTTGGGCTGCTCAATCTAGAGGGAAAGATGAGTATAGAAACTCTGATCAGCACTCGAAAGATGTGAGGCATGCTGACCATATTAGAAGGAGGGATCGTGTTGAAAATGAAAGTCCATCGAGGCTGAGGACACGTGAGGATGAAAGAAGAGCAAGGCATGACAGGGTGAACTCACGTGAAGATCGTGCTCCTATTGCTTCAGATAACTCCAGGGTTAATGAGAAAAGACATAAAGATTATTTGAAGAAGGGTAAAGAATTTGAGAGTGATCACAACTCCCCAATGGCTTTGAACATGAACGAAGATGAACTGAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E247578" ref_strand="+" ref_description="SGN-E247578 	[cLEF-42-H3]">
      <seq>gaggtgaaattaagtagggaacacattgacaaggaagaaacattccattcccatggagaaactatggttcgcagaaagcgagagagagatgatgcctcagatcaccgaaagagagatgagctgatgagactacgagaagatgagcagctctatatcaggcacaaagaagatggagtgtttcagagggagaggaatgatagacagcgagaacgtgaggagtggtataggctcaaacagtcacatgaagagacactaccaaaaagggagagagaagaaataaggggcgggatgcgggctggacgtgttccggaagaaaaagcttgggctgctcaatctagagggaaagatgagtatagaaactctgatcagcactcgaaagatgtgaggcatgctgaccatattagaaggagggatcgtgttgaaaatgaaagtccatcgaggctgaggacacgtgaggatgaaagaagagcaaggcatgacagggtgaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="88553" stop="89644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88853" g_stop="89344" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E247578" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88853" e_stop="89344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTGAAATTAAGTAGGGAACACATTGACAAGGAAGAAACATTCCATTCCCATGGAGAAACTATGGTTCGCAGAAAGCGAGAGAGAGATGATGCCTCAGATCACCGAAAGAGAGATGAGCTGATGAGACTACGAGAAGATGAGCAGCTCTATATCAGGCACAAAGAAGATGGAGTGTTTCAGAGGGAGAGGAATGATAGACAGCGAGAACGTGAGGAGTGGTATAGGCTCAAACAGTCACATGAAGAGACACTACCAAAAAGGGAGAGAGAAGAAATAAGGGGCGGGATGCGGGCTGGACGTGTTCCGGAAGAAAAAGCTTGGGCTGCTCAATCTAGAGGGAAAGATGAGTATAGAAACTCTGATCAGCACTCGAAAGATGTGAGGCATGCTGACCATATTAGAAGGAGGGATCGTGTTGAAAATGAAAGTCCATCGAGGCTGAGGACACGTGAGGATGAAAGAAGAGCAAGGCATGACAGGGTGAACTCA</genome_strand>
        <mrna_strand>GAGGTGAAATTAAGTAGGGAACACATTGACAAGGAAGAAACATTCCATTCCCATGGAGAAACTATGGTTCGCAGAAAGCGAGAGAGAGATGATGCCTCAGATCACCGAAAGAGAGATGAGCTGATGAGACTACGAGAAGATGAGCAGCTCTATATCAGGCACAAAGAAGATGGAGTGTTTCAGAGGGAGAGGAATGATAGACAGCGAGAACGTGAGGAGTGGTATAGGCTCAAACAGTCACATGAAGAGACACTACCAAAAAGGGAGAGAGAAGAAATAAGGGGCGGGATGCGGGCTGGACGTGTTCCGGAAGAAAAAGCTTGGGCTGCTCAATCTAGAGGGAAAGATGAGTATAGAAACTCTGATCAGCACTCGAAAGATGTGAGGCATGCTGACCATATTAGAAGGAGGGATCGTGTTGAAAATGAAAGTCCATCGAGGCTGAGGACACGTGAGGATGAAAGAAGAGCAAGGCATGACAGGGTGAACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E397833" ref_strand="-" ref_description="SGN-E397833 	[TUS-24-F16]">
      <seq>gaacatgaaagacagcaatgtacacaagggcaccggtacttcattagctaacaaaaatcaagatgaagctttaaagatggtcgaagaaaatcaacaacctgcagctaactataaaaatggaggtgcccctgagattaatagcctagaaacaaagcctgtggaggataaacatttggagacagttgagaagttgaagaagcgtagtgagcgcttcaagcttccaatgccaagtgagaaagaagctccagtaagtaaaaaggtggaaggtgatccattatcctcagttcaaagcgaaacccctccagattcagaggtgaagccagagcgtccagcacgcaggaggagatggacaagcagttaaatgaggaattcaaggaacatctttgtttgatggcttatttcctactcatggagtatatgccctccttggctaatgttttaccaatgtgcttgtcaacttaaggaagcctgtactgctgttgtctattctggatctgaggtttgtgtagacctcccatagtagatttgggtatctgtaaccatgttcagattatctatttggttttcttatttctgtaatacatgtatataccagtaagcctaacatcatagtggcccattgttggggtgccagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="91685" stop="92920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91985" g_stop="92620" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92621" i_stop="92809" i_length="189">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92810" g_stop="92819" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="646" r_length="10" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E397833" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397833" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91985" e_stop="92620"/>
          <exon e_start="92810" e_stop="92819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATGAAAGACAGCAATGTACACAAGGGCACCGGTACTTCATTAGCTAACAAAAATCAAGATGAAGCTTTAAAGATGGTCGAAGAAAATCAACAACCTGCAGCTAACTATAAAAATGGAGGTGCCCCTGAGATTAATAGCCTAGAAACAAAGCCTGTGGAGGATAAACATTTGGAGACAGTTGAGAAGTTGAAGAAGCGTAGTGAGCGCTTCAAGCTTCCAATGCCAAGTGAGAAAGAAGCTCCAGTAAGTAAAAAGGTGGAAGGTGATCCATTATCCTCAGTTCAAAGCGAAACCCCTCCAGATTCAGAGGTGAAGCCAGAGCGTCCAGCACGCAGGAGGAGATGGACAAGCAGTTAAATGAGGAATTCAAGGAACATCTTTGTTTGATGGCTTATTTCCTACTCATGGAGTATATGCCCTCCTTGGCTAATGTTTTACCAATGTGCTTGTCAACTTAAGGAAGCCTGTACTGCTGTTGTCTATTCTGGATCTGAGGTTTGTGTAGACCTCCCATAGTAGATTTGGGTATCTGTAACCATGTTCAGATTATCTATTTGGTTTTCTTATTTCTGTAATACATGTATATACCAGTAAGCCTAACATCATAGTGGCCCATTGTTGGGGTGCCAGAATTGCATTTTTGGGTATTAAATGACATTGCATTATAGTGTATGAGTAGTAGTAGTAAACACTGTATTCGAGAACCATAGTTAGCGACTATGGCTGATAGCTATGCCCTCCATGTTCTTCTTCCTTGAAGGCCAATCCCTGCAAGGAGTCTTGTGTGTTTGCTGTCACTTTTTTTGGACTATGAACTTCAGGAATCAAAAC</genome_strand>
        <mrna_strand>GAACATGAAAGACAGCAATGTACACAAGGGCACCGGTACTTCATTAGCTAACAAAAATCAAGATGAAGCTTTAAAGATGGTCGAAGAAAATCAACAACCTGCAGCTAACTATAAAAATGGAGGTGCCCCTGAGATTAATAGCCTAGAAACAAAGCCTGTGGAGGATAAACATTTGGAGACAGTTGAGAAGTTGAAGAAGCGTAGTGAGCGCTTCAAGCTTCCAATGCCAAGTGAGAAAGAAGCTCCAGTAAGTAAAAAGGTGGAAGGTGATCCATTATCCTCAGTTCAAAGCGAAACCCCTCCAGATTCAGAGGTGAAGCCAGAGCGTCCAGCACGCAGGAGGAGATGGACAAGCAGTTAAATGAGGAATTCAAGGAACATCTTTGTTTGATGGCTTATTTCCTACTCATGGAGTATATGCCCTCCTTGGCTAATGTTTTACCAATGTGCTTGTCAACTTAAGGAAGCCTGTACTGCTGTTGTCTATTCTGGATCTGAGGTTTGTGTAGACCTCCCATAGTAGATTTGGGTATCTGTAACCATGTTCAGATTATCTATTTGGTTTTCTTATTTCTGTAATACATGTATATACCAGTAAGCCTAACATCATAGTGGCCCATTGTTGGGGTGCCAGAA.............................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E577666" ref_strand="+" ref_description="SGN-E577666 	[LE15BE08]">
      <seq>cttgagcctcaggagaaagaattagccgaaagatgcttgaagtcttgtgaattcccttttgttaggtcagcctaaaaaaggcaagaatgaggcagcagagagtatgggatttctatcaagggtggttggccttctctctatgctttacttgtgattcttcatttctcaaaacaaaccaacagcccttcaaaagaaagagacagagagagtacaattgagtttctgggtttatttgcagtttgcacccttaaacatatgtcataagggaatatacacaactatacaacaacaactataaaatgactatgaaaactattaaagaggcagtgatgatttctgggctagcaagatttcgggcatggagagtacccaacccgtaccttggcatgacaacacggtatggcctgtaattgagacgcataactcacacatgcaatcgtgcgttgcagccatggcatggttggcttctctttttcctcgtcattacacaaatctgagcctcaatttgctaaagaaaaaagggaaaatgatcaaatttgcccctttactatgatcaaagtgggagatatcgaggtcttctcgttttaagctctcatataagcaaattccatctattaggtttgcccagaaatagagagaatgaggctgcagagagtatgggatttctttcaagggtggttgcccctgtctngcttgcctatgattctccccttctcaacaaccaacagccttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="99151" stop="100503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99451" g_stop="100203" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E577666" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.026" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99451" e_stop="100203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAGCCTCAGGAGAAAGAATTAGCCGAAAGATGCTTGAAGTCTTGTGAATTCCCTTTTGTTAGGTCAGCCTATAAAAGGCAAGAATGAGGCAGCAGAGAGTATGGGATTTCTATCAAGGGTGGTTGGCCTTCTCTCTATGCTTTGCTTATGATTCTCCATTTCTCAAAACAAACCAACAGCCCTTCAAAAGAAAGAGACAGAGAGAGTACAATTGAGTTTCTGGGTTTATTTGCAGTTTGCA-CC--ACCCTTAAGACAT-A-TG--TATACACAACTAT---ACTACAACTATAAAATGACTATGAAAACTATTAAAGAGGCAGTGATGATTTCTGGGCTAGCAAGATTTCGGGCATGGAGAGTACCCAACCCGTACCTTGGCATGACAACACGGTATGGCCTGTAATTGAGACGCATAACTCACACATGCAATCGTGCGTTGCAGCCATGGCATGGCTGGCTTCTCTTTTTCCTCGTCATTACACAAATCTGAGCCTCAATTTGCTAAAGAAAAAAAGGGAAAATGATCAAATTTGCCCCTTTACTATGCATAAGGGGCAATATCTTTTCCATGATCAAAGTGGGAGATATTGAGGTCTTCTCGTTTTAAGCTCTCATACAAGCAAATTCCATCTATTAGGTTTGCCCAGAAATAGAGAGAATGAGGCTGCAGAGAGAGTATGGGATTTCTTTCAAGGGTGGTTGCCCCTGTCTGCTTTGCCTATGATTCTCCCCTTCTCAACAAACCAACAGCCTTTA</genome_strand>
        <mrna_strand>CTTGAGCCTCAGGAGAAAGAATTAGCCGAAAGATGCTTGAAGTCTTGTGAATTCCCTTTTGTTAGGTCAGCCTAAAAAAGGCAAGAATGAGGCAGCAGAGAGTATGGGATTTCTATCAAGGGTGGTTGGCCTTCTCTCTATGCTTTACTTGTGATTCTTCATTTCTCAAAACAAACCAACAGCCCTTCAAAAGAAAGAGACAGAGAGAGTACAATTGAGTTTCTGGGTTTATTTGCAGTTTGCACCCTTAAACATATGTCATAAGGGAATATACACAACTATACAACAACAACTATAAAATGACTATGAAAACTATTAAAGAGGCAGTGATGATTTCTGGGCTAGCAAGATTTCGGGCATGGAGAGTACCCAACCCGTACCTTGGCATGACAACACGGTATGGCCTGTAATTGAGACGCATAACTCACACATGCAATCGTGCGTTGCAGCCATGGCATGGTTGGCTTCTCTTTTTCCTCGTCATTACACAAATCTGAGCCTCAATTTGCTAAAG-AAAAAAGGGAAAATGATCAAATTTG-CCC----C--T---T---------TA-C---T--ATGATCAAAGTGGGAGATATCGAGGTCTTCTCGTTTTAAGCTCTCATATAAGCAAATTCCATCTATTAGGTTTGCCCAGAAATAGAGAGAATGAGGCTGC--AGAGAGTATGGGATTTCTTTCAAGGGTGGTTGCCCCTGTCTNGCTTGCCTATGATTCTCCCCTTCTCAAC-AACCAACAGCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E311554" ref_strand="+" ref_description="SGN-E311554 	[cTOA-6-A17]">
      <seq>tgttttgcagccatggcgagactggcttctcttttgccatatcattacatacatctgagccacaatttgttgaagaacataagtaggcatttggacattattgcagttaaattctcttaaatgcagacttgtgacgtctcgtcagttagaagctctaatctaaacgaacttccttcttttagcaggaatgacgagtatgaggcagcagagagtatgggatttctttcaagggtggttgcccctctctactttgcctatgattctacccttctcaacaaaccaacagcccttaagaaaagaaaaaagagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="100241" stop="101152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100541" g_stop="100852" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E311554" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100541" e_stop="100852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTGCAGCCATGGCGAGACTGGCTTCTCTTTTGCCATATCATTACATACATCTGAGCCACAATTTGTTGAAGAACATAAGTAGGCATTTGGACATTATTGCAGTTAAATTCTCTTAAATGCAGACTTGTGACGTCTCGTCAGTTAGAAGCTCTAATCTAAACGAACTTCCTTCTTTTAGCAGGAATGACGAGTATGAGGCAGCAGAGAGTATGGGATTTCTTTCAAGGGTGGTTGCCCCTCTCTACTTTGCCTATGATTCTACCCTTCTCAACAAACCAACAGCCCTTAAGAAAAGAAAAAAGAGAAAA</genome_strand>
        <mrna_strand>TGTTTTGCAGCCATGGCGAGACTGGCTTCTCTTTTGCCATATCATTACATACATCTGAGCCACAATTTGTTGAAGAACATAAGTAGGCATTTGGACATTATTGCAGTTAAATTCTCTTAAATGCAGACTTGTGACGTCTCGTCAGTTAGAAGCTCTAATCTAAACGAACTTCCTTCTTTTAGCAGGAATGACGAGTATGAGGCAGCAGAGAGTATGGGATTTCTTTCAAGGGTGGTTGCCCCTCTCTACTTTGCCTATGATTCTACCCTTCTCAACAAACCAACAGCCCTTAAGAAAAGAAAAAAGAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E298658" ref_strand="+" ref_description="SGN-E298658 	[cLET-44-I8]">
      <seq>aaggttagcccagaaaagaaaaaagaggcaaaacagagagtttttggattttattaacaagggtggttgcccctctcttgtttagcctatgaatgattcttttagagatgaagcaacaacccttgaattcatgttaatttcctgggaattattggaacatgcatgccatacatacatacatacaacaaacatacatatattcctcaactttccaattctacatctatgccattctcttttttgttaattaattactcactctttgttggtgtttgatctattgaggctgtgatgatgatgatgatgggctaaccggatcgggcttggagattatgcgactcgtatcttggcttggcaaattttgcagccatggcgtggtcgtctctctctttgttccgatctctttgcagatctgagccttttggacacatgcatgtgtttctgggaaatgactgaattattgaacatggaaaattaaaccttttcttcaacttcaacaactatggttacaaactctgtttcttctgtgtttttttttatccaaataatgagaggcgatgatgaagataatgatttctttggattctgggctaatcgggtcgggtatgaagattatacgacccgtatcttggcttggcaaattttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="103621" stop="104867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103921" g_stop="104567" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E298658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103921" e_stop="104567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTAGCCCAGAAAAGAAAAAAGAGGCAAAACAGAGAGTTTTTGGATTTTATTAACAAGGGTGGTTGCCCCTCTCTTGTTTAGCCTATGAATGATTCTTTTAGAGATGAAGCAACAACCCTTGAATTCATGTTAATTTCCTGGGAATTATTGGAACATGCATGCCATACATACATACATACAACAAACATACATATATTCCTCAACTTTCCAATTCTACATCTATGCCATTCTCTTTTTTGTTAATTAATTACTCACTCTTTGTTGGTGTTTGATCTATTGAGGCTGTGATGATGATGATGATGGGCTAACCGGATCGGGCTTGGAGATTATGCGACTCGTATCTTGGCTTGGCAAATTTTGCAGCCATGGCGTGGTCGTCTCTCTCTTTGTTCCGATCTCTTTGCAGATCTGAGCCTTTTGGACACATGCATGTGTTTCTGGGAAATGACTGAATTATTGAACATGGAAAATTAAACCTTTTCTTCAACTTCAACAACTATGGTTACAAACTCTGTTTCTTCTGTGTTTTTTTTTATCCAAATAATGAGAGGCGATGATGAAGATAATGATTTCTTTGGATTCTGGGCTAATCGGGTCGGGTATGAAGATTATACGACCCGTATCTTGGCTTGGCAAATTTTGC</genome_strand>
        <mrna_strand>AAGGTTAGCCCAGAAAAGAAAAAAGAGGCAAAACAGAGAGTTTTTGGATTTTATTAACAAGGGTGGTTGCCCCTCTCTTGTTTAGCCTATGAATGATTCTTTTAGAGATGAAGCAACAACCCTTGAATTCATGTTAATTTCCTGGGAATTATTGGAACATGCATGCCATACATACATACATACAACAAACATACATATATTCCTCAACTTTCCAATTCTACATCTATGCCATTCTCTTTTTTGTTAATTAATTACTCACTCTTTGTTGGTGTTTGATCTATTGAGGCTGTGATGATGATGATGATGGGCTAACCGGATCGGGCTTGGAGATTATGCGACTCGTATCTTGGCTTGGCAAATTTTGCAGCCATGGCGTGGTCGTCTCTCTCTTTGTTCCGATCTCTTTGCAGATCTGAGCCTTTTGGACACATGCATGTGTTTCTGGGAAATGACTGAATTATTGAACATGGAAAATTAAACCTTTTCTTCAACTTCAACAACTATGGTTACAAACTCTGTTTCTTCTGTGTTTTTTTTTATCCAAATAATGAGAGGCGATGATGAAGATAATGATTTCTTTGGATTCTGGGCTAATCGGGTCGGGTATGAAGATTATACGACCCGTATCTTGGCTTGGCAAATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E329341" ref_strand="+" ref_description="SGN-E329341 	[cTOD-2-H18]">
      <seq>agaaaagaaaaaagaggcaaaacagagagtttttggattttattaacaagggtggttgcccctctcttgtttagcctatgaatgattcttttatagatgaagcaacaacccttgaattcatgttaatttcctgggaattattggaacatgcatgccatacatacatacatacaacaaacatacatatattcctcaactttccaattctacatctatgccattctcttttttgttaattaattactcactctttgttggtgtttgatctattgaggctgtgatgatgatgatgatgggctaaccggatcgggcttggagattatgcgactcgtatcttggcttggcaaattttgcagccatggcgtggtcgtctctctctttgttccgatctctttgcagatctgagccttttggacacatgcatgtgtttctgggaaatgactgaattattgaacatggaaaattaaaccttttcttcaacttcaacaactatggttacaaactctgtttcttctgtgtttttttttatccaaataatgagaggcgatgatgaagataatgatttctttggattctgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="103632" stop="104812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103932" g_stop="104512" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E329341" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103932" e_stop="104512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGAAAAAAGAGGCAAAACAGAGAGTTTTTGGATTTTATTAACAAGGGTGGTTGCCCCTCTCTTGTTTAGCCTATGAATGATTCTTTTAGAGATGAAGCAACAACCCTTGAATTCATGTTAATTTCCTGGGAATTATTGGAACATGCATGCCATACATACATACATACAACAAACATACATATATTCCTCAACTTTCCAATTCTACATCTATGCCATTCTCTTTTTTGTTAATTAATTACTCACTCTTTGTTGGTGTTTGATCTATTGAGGCTGTGATGATGATGATGATGGGCTAACCGGATCGGGCTTGGAGATTATGCGACTCGTATCTTGGCTTGGCAAATTTTGCAGCCATGGCGTGGTCGTCTCTCTCTTTGTTCCGATCTCTTTGCAGATCTGAGCCTTTTGGACACATGCATGTGTTTCTGGGAAATGACTGAATTATTGAACATGGAAAATTAAACCTTTTCTTCAACTTCAACAACTATGGTTACAAACTCTGTTTCTTCTGTGTTTTTTTTTATCCAAATAATGAGAGGCGATGATGAAGATAATGATTTCTTTGGATTCTGGGCT</genome_strand>
        <mrna_strand>AGAAAAGAAAAAAGAGGCAAAACAGAGAGTTTTTGGATTTTATTAACAAGGGTGGTTGCCCCTCTCTTGTTTAGCCTATGAATGATTCTTTTATAGATGAAGCAACAACCCTTGAATTCATGTTAATTTCCTGGGAATTATTGGAACATGCATGCCATACATACATACATACAACAAACATACATATATTCCTCAACTTTCCAATTCTACATCTATGCCATTCTCTTTTTTGTTAATTAATTACTCACTCTTTGTTGGTGTTTGATCTATTGAGGCTGTGATGATGATGATGATGGGCTAACCGGATCGGGCTTGGAGATTATGCGACTCGTATCTTGGCTTGGCAAATTTTGCAGCCATGGCGTGGTCGTCTCTCTCTTTGTTCCGATCTCTTTGCAGATCTGAGCCTTTTGGACACATGCATGTGTTTCTGGGAAATGACTGAATTATTGAACATGGAAAATTAAACCTTTTCTTCAACTTCAACAACTATGGTTACAAACTCTGTTTCTTCTGTGTTTTTTTTTATCCAAATAATGAGAGGCGATGATGAAGATAATGATTTCTTTGGATTCTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E290727" ref_strand="+" ref_description="SGN-E290727 	[cLET-10-O16]">
      <seq>aaaagaaaaaagaggcaaaacagagagtttttggattttattaacaagggtggttgcccctctcttgtttagcctatgaatgattcttttagagatgaagcaacaacccttgaattcatgttaatttcctgggaattattggaacatgcatgccatacatacatacatacaacaaacatacatatattcctcaactttccaattctacatctatgccattctcttttttgttaattaattactcactctttgttggtgtttgatctattgaggctgtgatgatgatgatgatgggctaaccggatcgggcttggagattatgcgactcgtatcttggcttggcaaattttgcagccatggcgtggtcgtctctctctttgttccgatctctttgcagatctgagccttttggacacatgcatgtgtttctgggaaatgactgaattattgaacatggaaaattaaaccttttcttcaacttcaacaactatggttacaaactctgnttcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="103634" stop="104746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103934" g_stop="104446" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E290727" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103934" e_stop="104446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAAAGAGGCAAAACAGAGAGTTTTTGGATTTTATTAACAAGGGTGGTTGCCCCTCTCTTGTTTAGCCTATGAATGATTCTTTTAGAGATGAAGCAACAACCCTTGAATTCATGTTAATTTCCTGGGAATTATTGGAACATGCATGCCATACATACATACATACAACAAACATACATATATTCCTCAACTTTCCAATTCTACATCTATGCCATTCTCTTTTTTGTTAATTAATTACTCACTCTTTGTTGGTGTTTGATCTATTGAGGCTGTGATGATGATGATGATGGGCTAACCGGATCGGGCTTGGAGATTATGCGACTCGTATCTTGGCTTGGCAAATTTTGCAGCCATGGCGTGGTCGTCTCTCTCTTTGTTCCGATCTCTTTGCAGATCTGAGCCTTTTGGACACATGCATGTGTTTCTGGGAAATGACTGAATTATTGAACATGGAAAATTAAACCTTTTCTTCAACTTCAACAACTATGGTTACAAACTCTGTTTCTTCT</genome_strand>
        <mrna_strand>AAAAGAAAAAAGAGGCAAAACAGAGAGTTTTTGGATTTTATTAACAAGGGTGGTTGCCCCTCTCTTGTTTAGCCTATGAATGATTCTTTTAGAGATGAAGCAACAACCCTTGAATTCATGTTAATTTCCTGGGAATTATTGGAACATGCATGCCATACATACATACATACAACAAACATACATATATTCCTCAACTTTCCAATTCTACATCTATGCCATTCTCTTTTTTGTTAATTAATTACTCACTCTTTGTTGGTGTTTGATCTATTGAGGCTGTGATGATGATGATGATGGGCTAACCGGATCGGGCTTGGAGATTATGCGACTCGTATCTTGGCTTGGCAAATTTTGCAGCCATGGCGTGGTCGTCTCTCTCTTTGTTCCGATCTCTTTGCAGATCTGAGCCTTTTGGACACATGCATGTGTTTCTGGGAAATGACTGAATTATTGAACATGGAAAATTAAACCTTTTCTTCAACTTCAACAACTATGGTTACAAACTCTGNTTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E371834" ref_strand="+" ref_description="SGN-E371834 	[TUS-30-I19]">
      <seq>agaaaaaagaggcaaaacagagagtttttggattttattaacaagggtggttgcccctctcttgtttagcctatgaatgattcttttagagatgaagcaacaacccttgaattcatgttaatttcctgggaattattggaacatgcatgccatacatacatacatacaacaaacatacatatattcctcaactttccaattctacatctatgccattctcttttttgttaattaattactcactctttgttggtgtttgatctattgaggctgtgatgatgatgatgatgggctaaccggatcgggcttggagattatgcgactcgtatcttggcttggcaaattttgcagccatggcgtggtcgtctctctctttgttccgatctctttgcagatctgagccttttggacacatgcatgtgtttctgggaaatgactgaattattgaacatggaaaattaaaccttttcttcaacttcaacaactatggttacaaactctgtttcttctgtgtttttttttatccaaataatgagaggcgatgatgaagataatgatttctttggattctgggctaatcgggtcgggtatgaagattatacgacccgtatcttggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="103637" stop="104854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103937" g_stop="104554" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E371834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103937" e_stop="104554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAAGAGGCAAAACAGAGAGTTTTTGGATTTTATTAACAAGGGTGGTTGCCCCTCTCTTGTTTAGCCTATGAATGATTCTTTTAGAGATGAAGCAACAACCCTTGAATTCATGTTAATTTCCTGGGAATTATTGGAACATGCATGCCATACATACATACATACAACAAACATACATATATTCCTCAACTTTCCAATTCTACATCTATGCCATTCTCTTTTTTGTTAATTAATTACTCACTCTTTGTTGGTGTTTGATCTATTGAGGCTGTGATGATGATGATGATGGGCTAACCGGATCGGGCTTGGAGATTATGCGACTCGTATCTTGGCTTGGCAAATTTTGCAGCCATGGCGTGGTCGTCTCTCTCTTTGTTCCGATCTCTTTGCAGATCTGAGCCTTTTGGACACATGCATGTGTTTCTGGGAAATGACTGAATTATTGAACATGGAAAATTAAACCTTTTCTTCAACTTCAACAACTATGGTTACAAACTCTGTTTCTTCTGTGTTTTTTTTTATCCAAATAATGAGAGGCGATGATGAAGATAATGATTTCTTTGGATTCTGGGCTAATCGGGTCGGGTATGAAGATTATACGACCCGTATCTTGGCT</genome_strand>
        <mrna_strand>AGAAAAAAGAGGCAAAACAGAGAGTTTTTGGATTTTATTAACAAGGGTGGTTGCCCCTCTCTTGTTTAGCCTATGAATGATTCTTTTAGAGATGAAGCAACAACCCTTGAATTCATGTTAATTTCCTGGGAATTATTGGAACATGCATGCCATACATACATACATACAACAAACATACATATATTCCTCAACTTTCCAATTCTACATCTATGCCATTCTCTTTTTTGTTAATTAATTACTCACTCTTTGTTGGTGTTTGATCTATTGAGGCTGTGATGATGATGATGATGGGCTAACCGGATCGGGCTTGGAGATTATGCGACTCGTATCTTGGCTTGGCAAATTTTGCAGCCATGGCGTGGTCGTCTCTCTCTTTGTTCCGATCTCTTTGCAGATCTGAGCCTTTTGGACACATGCATGTGTTTCTGGGAAATGACTGAATTATTGAACATGGAAAATTAAACCTTTTCTTCAACTTCAACAACTATGGTTACAAACTCTGTTTCTTCTGTGTTTTTTTTTATCCAAATAATGAGAGGCGATGATGAAGATAATGATTTCTTTGGATTCTGGGCTAATCGGGTCGGGTATGAAGATTATACGACCCGTATCTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E285744" ref_strand="+" ref_description="SGN-E285744 	[cLES-5-I9]">
      <seq>agaaaaaagaggcaaaacagagagtttttggattttattaacaagggtggttgcccctctcttgtttagcctatgaatgattcttttagagatgaagcaacaacccttgaattcatgttaatttcctgggaattattggaacatgcatgccatacatacatacatacaacaaacatacatatattcctcaactttccaattctacatctatgccattctcttttttgttaattaattactcactctttgttggtgtttgatctattgaggctgtgatgatgatgatgatgggctaaccggatcgggcttggagattatgcgactcgtatcttggcttggcaaattttgcagccatggcgtggtcgtctctctctttgttccgatctctttgcagatctgagccttttggacacatgcatgtgtttctgggaaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="103637" stop="104673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103937" g_stop="104373" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E285744" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103937" e_stop="104373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAAGAGGCAAAACAGAGAGTTTTTGGATTTTATTAACAAGGGTGGTTGCCCCTCTCTTGTTTAGCCTATGAATGATTCTTTTAGAGATGAAGCAACAACCCTTGAATTCATGTTAATTTCCTGGGAATTATTGGAACATGCATGCCATACATACATACATACAACAAACATACATATATTCCTCAACTTTCCAATTCTACATCTATGCCATTCTCTTTTTTGTTAATTAATTACTCACTCTTTGTTGGTGTTTGATCTATTGAGGCTGTGATGATGATGATGATGGGCTAACCGGATCGGGCTTGGAGATTATGCGACTCGTATCTTGGCTTGGCAAATTTTGCAGCCATGGCGTGGTCGTCTCTCTCTTTGTTCCGATCTCTTTGCAGATCTGAGCCTTTTGGACACATGCATGTGTTTCTGGGAAATGAC</genome_strand>
        <mrna_strand>AGAAAAAAGAGGCAAAACAGAGAGTTTTTGGATTTTATTAACAAGGGTGGTTGCCCCTCTCTTGTTTAGCCTATGAATGATTCTTTTAGAGATGAAGCAACAACCCTTGAATTCATGTTAATTTCCTGGGAATTATTGGAACATGCATGCCATACATACATACATACAACAAACATACATATATTCCTCAACTTTCCAATTCTACATCTATGCCATTCTCTTTTTTGTTAATTAATTACTCACTCTTTGTTGGTGTTTGATCTATTGAGGCTGTGATGATGATGATGATGGGCTAACCGGATCGGGCTTGGAGATTATGCGACTCGTATCTTGGCTTGGCAAATTTTGCAGCCATGGCGTGGTCGTCTCTCTCTTTGTTCCGATCTCTTTGCAGATCTGAGCCTTTTGGACACATGCATGTGTTTCTGGGAAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E371833" ref_strand="+" ref_description="SGN-E371833 	[TUS-30-I19]">
      <seq>tttttttttttgtatgattttaaaagttattcattatgaatttagaggctcagatctgcaaaagaaatcgaggtagaagagagccgaccacgccatggctgcaaaatttgccaagccaagatacgggtcgtataatcttcatacccgacccgattagcccagaatccaaagaaatcattatcttcatcatcgcctctcattatttggataaaaaaaaacacagaagaaacagagtttgtaaccatagttgttgaagttgaagaaaaggtttaattttccatgttcaataattcagtcatttcccagaaacacatgcatgtgtccaaaaggctcagatctgcaaagagatcggaacaaagagagagacgaccacgccatggctgcaaaatttgccaagccaagatacgagtcgcataatctccaagcccgatccggttagcccatcatcatcatcatcacagcctcaatagatcaaacaccaacaaagagtgagtaattaattaacaaaaaagagaatggcatagatgtagaattggaaagttgaggaatatatgtatgtttgttgtatgtatgtatgtatggcatgcatgttccaataattcccaggaaattaacatgaattcaagggttgttgcttcatctctaaaagaatcattcataggctaaacaagaaaggggcaaccacccttgttaataaaaccaaaaactctttgtttttgctctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="104960" stop="103641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104660" g_stop="103941" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="726" r_length="719" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E371833" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104660" e_stop="103941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTATGAATCCAAAAGTTATTCATTATGAATTTAGAGGCTCAGATCTGCAAAAGAAATCGAGGTAGAAGAGAGCCGACCACGCCATGGCTGCAAAATTTGCCAAGCCAAGATACGGGTCGTATAATCTTCATACCCGACCCGATTAGCCCAGAATCCAAAGAAATCATTATCTTCATCATCGCCTCTCATTATTTGGATAAAAAAAAACACAGAAGAAACAGAGTTTGTAACCATAGTTGTTGAAGTTGAAGAAAAGGTTTAATTTTCCATGTTCAATAATTCAGTCATTTCCCAGAAACACATGCATGTGTCCAAAAGGCTCAGATCTGCAAAGAGATCGGAACAAAGAGAGAGACGACCACGCCATGGCTGCAAAATTTGCCAAGCCAAGATACGAGTCGCATAATCTCCAAGCCCGATCCGGTTAGCCCATCATCATCATCATCACAGCCTCAATAGATCAAACACCAACAAAGAGTGAGTAATTAATTAACAAAAAAGAGAATGGCATAGATGTAGAATTGGAAAGTTGAGGAATATATGTATGTTTGTTGTATGTATGTATGTATGGCATGCATGTTCCAATAATTCCCAGGAAATTAACATGAATTCAAGGGTTGTTGCTTCATCTCTAAAAGAATCATTCATAGGCTAAACAAGAGAGGGGCAACCACCCTTGTTAATAAAATCCAAAAACTCTCTGTTTTGCCTCTTTT</genome_strand>
        <mrna_strand>TTTTGTATGATTTTAAAAGTTATTCATTATGAATTTAGAGGCTCAGATCTGCAAAAGAAATCGAGGTAGAAGAGAGCCGACCACGCCATGGCTGCAAAATTTGCCAAGCCAAGATACGGGTCGTATAATCTTCATACCCGACCCGATTAGCCCAGAATCCAAAGAAATCATTATCTTCATCATCGCCTCTCATTATTTGGATAAAAAAAAACACAGAAGAAACAGAGTTTGTAACCATAGTTGTTGAAGTTGAAGAAAAGGTTTAATTTTCCATGTTCAATAATTCAGTCATTTCCCAGAAACACATGCATGTGTCCAAAAGGCTCAGATCTGCAAAGAGATCGGAACAAAGAGAGAGACGACCACGCCATGGCTGCAAAATTTGCCAAGCCAAGATACGAGTCGCATAATCTCCAAGCCCGATCCGGTTAGCCCATCATCATCATCATCACAGCCTCAATAGATCAAACACCAACAAAGAGTGAGTAATTAATTAACAAAAAAGAGAATGGCATAGATGTAGAATTGGAAAGTTGAGGAATATATGTATGTTTGTTGTATGTATGTATGTATGGCATGCATGTTCCAATAATTCCCAGGAAATTAACATGAATTCAAGGGTTGTTGCTTCATCTCTAAAAGAATCATTCATAGGCTAAACAAGAAAGGGGCAACCACCCTTGTTAATAAAA-CCAAAAACTCTTTGTTTTTGCTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E294901" ref_strand="+" ref_description="SGN-E294901 	[cLET-17-I23]">
      <seq>aaagaggcaaaacagagagtttttggattttattaacaagggtggttgcccctctcttgtttagcctatgaatgattcttttagagatgaagcaacaacccttgaattcatgttaatttcctgggaattattggaacatgcatgccatacatacatacatacaacaaacatacatatattcctcaactttccaattctacatctatgccattctcttttttgttaattaattactcactctttgttggtgtttgatctattgaggctgtgatgatgatgatgatgggctaaccggatcgggcttggagattatgcgactcgtatcttggcttggcaaattttgcagccatggcgtggtcgtctctctctttgttccgatctctttgcagatctgagccttttggacacatgcatgtgtttctgggaaatgactgaattattgaacatggaaaattaaaccttttcttcaacttcaacaactatggttacaaactctgtttcttctgtggttttttttatccaaataatgagaggcgatgatgaagataatgatttctttggattctgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="103642" stop="104812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103942" g_stop="104512" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E294901" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103942" e_stop="104512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGCAAAACAGAGAGTTTTTGGATTTTATTAACAAGGGTGGTTGCCCCTCTCTTGTTTAGCCTATGAATGATTCTTTTAGAGATGAAGCAACAACCCTTGAATTCATGTTAATTTCCTGGGAATTATTGGAACATGCATGCCATACATACATACATACAACAAACATACATATATTCCTCAACTTTCCAATTCTACATCTATGCCATTCTCTTTTTTGTTAATTAATTACTCACTCTTTGTTGGTGTTTGATCTATTGAGGCTGTGATGATGATGATGATGGGCTAACCGGATCGGGCTTGGAGATTATGCGACTCGTATCTTGGCTTGGCAAATTTTGCAGCCATGGCGTGGTCGTCTCTCTCTTTGTTCCGATCTCTTTGCAGATCTGAGCCTTTTGGACACATGCATGTGTTTCTGGGAAATGACTGAATTATTGAACATGGAAAATTAAACCTTTTCTTCAACTTCAACAACTATGGTTACAAACTCTGTTTCTTCTGTGTTTTTTTTTATCCAAATAATGAGAGGCGATGATGAAGATAATGATTTCTTTGGATTCTGGGCT</genome_strand>
        <mrna_strand>AAAGAGGCAAAACAGAGAGTTTTTGGATTTTATTAACAAGGGTGGTTGCCCCTCTCTTGTTTAGCCTATGAATGATTCTTTTAGAGATGAAGCAACAACCCTTGAATTCATGTTAATTTCCTGGGAATTATTGGAACATGCATGCCATACATACATACATACAACAAACATACATATATTCCTCAACTTTCCAATTCTACATCTATGCCATTCTCTTTTTTGTTAATTAATTACTCACTCTTTGTTGGTGTTTGATCTATTGAGGCTGTGATGATGATGATGATGGGCTAACCGGATCGGGCTTGGAGATTATGCGACTCGTATCTTGGCTTGGCAAATTTTGCAGCCATGGCGTGGTCGTCTCTCTCTTTGTTCCGATCTCTTTGCAGATCTGAGCCTTTTGGACACATGCATGTGTTTCTGGGAAATGACTGAATTATTGAACATGGAAAATTAAACCTTTTCTTCAACTTCAACAACTATGGTTACAAACTCTGTTTCTTCTGTGGTTTTTTTTATCCAAATAATGAGAGGCGATGATGAAGATAATGATTTCTTTGGATTCTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E294902" ref_strand="+" ref_description="SGN-E294902 	[cLET-17-I23]">
      <seq>aaagaggcaaaacagagagtttttggattttattaacaagggtggttgcccctctcttgtttagcctatgaatgattcttttagagatgaagcaacaacccttgaattcatgttaatttcctgggaattattggaacatgcatgccatacatacatacatacaacaaacatacatatattcctcaactttccaattctacatctatgccattctcttttttgttaattaattactcactctttgttggtgtttgatctattgaggctgtgatgatgatgatgatgggctaaccggatcgggcttggagattatgcgactcgtatcttggcttggcaaattttgcagccatggcgtggtcgtctctctctttgttccgatctctttgcagatctgagccttttggacacatgcatgtgtttctgggaaatgactgaattattgaacatggaaaattaaaccttttcttcaacttcaacaactatggttacaaactctgtttcttctgtggttttttttatccaaataatgagaggcgatgatgaagataatgatttctttggattctgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="103642" stop="104812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103942" g_stop="104512" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E294902" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103942" e_stop="104512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGCAAAACAGAGAGTTTTTGGATTTTATTAACAAGGGTGGTTGCCCCTCTCTTGTTTAGCCTATGAATGATTCTTTTAGAGATGAAGCAACAACCCTTGAATTCATGTTAATTTCCTGGGAATTATTGGAACATGCATGCCATACATACATACATACAACAAACATACATATATTCCTCAACTTTCCAATTCTACATCTATGCCATTCTCTTTTTTGTTAATTAATTACTCACTCTTTGTTGGTGTTTGATCTATTGAGGCTGTGATGATGATGATGATGGGCTAACCGGATCGGGCTTGGAGATTATGCGACTCGTATCTTGGCTTGGCAAATTTTGCAGCCATGGCGTGGTCGTCTCTCTCTTTGTTCCGATCTCTTTGCAGATCTGAGCCTTTTGGACACATGCATGTGTTTCTGGGAAATGACTGAATTATTGAACATGGAAAATTAAACCTTTTCTTCAACTTCAACAACTATGGTTACAAACTCTGTTTCTTCTGTGTTTTTTTTTATCCAAATAATGAGAGGCGATGATGAAGATAATGATTTCTTTGGATTCTGGGCT</genome_strand>
        <mrna_strand>AAAGAGGCAAAACAGAGAGTTTTTGGATTTTATTAACAAGGGTGGTTGCCCCTCTCTTGTTTAGCCTATGAATGATTCTTTTAGAGATGAAGCAACAACCCTTGAATTCATGTTAATTTCCTGGGAATTATTGGAACATGCATGCCATACATACATACATACAACAAACATACATATATTCCTCAACTTTCCAATTCTACATCTATGCCATTCTCTTTTTTGTTAATTAATTACTCACTCTTTGTTGGTGTTTGATCTATTGAGGCTGTGATGATGATGATGATGGGCTAACCGGATCGGGCTTGGAGATTATGCGACTCGTATCTTGGCTTGGCAAATTTTGCAGCCATGGCGTGGTCGTCTCTCTCTTTGTTCCGATCTCTTTGCAGATCTGAGCCTTTTGGACACATGCATGTGTTTCTGGGAAATGACTGAATTATTGAACATGGAAAATTAAACCTTTTCTTCAACTTCAACAACTATGGTTACAAACTCTGTTTCTTCTGTGGTTTTTTTTATCCAAATAATGAGAGGCGATGATGAAGATAATGATTTCTTTGGATTCTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E267886" ref_strand="-" ref_description="SGN-E267886 	[cLEI-12-H11]">
      <seq>atagagatgtatattgagaatgacgtttgatctattgaggctgtgatgatgatgatgatgggctaaccggatcgggcttggagattatgcgactcgtatcttggcttggcaaattttgcagccatggcgtggtcgtctctctctttgttccgatctctttgcagatctgagccttttggacacatgcatgtgtttctgggaaatgactgaattattgaacatggaaaattaaaccttttcttcaacttcaacaactatggttacaaactctgtttcttctgtgtttttttttatccaaataatgagaggcgatgatgaagataatgatttctttggattctgggctaatcgggtcgggtatgaagattatacgacccgtatcttggcttggcaaattttgcagccatggcgtggtcggctctcttctacctcgatttcttttgcagatctgagcctctaaattcataatgaataacttttggattcatgcaaaaaaaaaaaaaaaaaaaaactcagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="103887" stop="104960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104191" g_stop="104660" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="494" r_length="470" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="512"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E267886" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267886" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="104191" e_stop="104660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGATCTATTGAGGCTGTGATGATGATGATGATGGGCTAACCGGATCGGGCTTGGAGATTATGCGACTCGTATCTTGGCTTGGCAAATTTTGCAGCCATGGCGTGGTCGTCTCTCTCTTTGTTCCGATCTCTTTGCAGATCTGAGCCTTTTGGACACATGCATGTGTTTCTGGGAAATGACTGAATTATTGAACATGGAAAATTAAACCTTTTCTTCAACTTCAACAACTATGGTTACAAACTCTGTTTCTTCTGTGTTTTTTTTTATCCAAATAATGAGAGGCGATGATGAAGATAATGATTTCTTTGGATTCTGGGCTAATCGGGTCGGGTATGAAGATTATACGACCCGTATCTTGGCTTGGCAAATTTTGCAGCCATGGCGTGGTCGGCTCTCTTCTACCTCGATTTCTTTTGCAGATCTGAGCCTCTAAATTCATAATGAATAACTTTTGGATTCATACAAAA</genome_strand>
        <mrna_strand>GTTTGATCTATTGAGGCTGTGATGATGATGATGATGGGCTAACCGGATCGGGCTTGGAGATTATGCGACTCGTATCTTGGCTTGGCAAATTTTGCAGCCATGGCGTGGTCGTCTCTCTCTTTGTTCCGATCTCTTTGCAGATCTGAGCCTTTTGGACACATGCATGTGTTTCTGGGAAATGACTGAATTATTGAACATGGAAAATTAAACCTTTTCTTCAACTTCAACAACTATGGTTACAAACTCTGTTTCTTCTGTGTTTTTTTTTATCCAAATAATGAGAGGCGATGATGAAGATAATGATTTCTTTGGATTCTGGGCTAATCGGGTCGGGTATGAAGATTATACGACCCGTATCTTGGCTTGGCAAATTTTGCAGCCATGGCGTGGTCGGCTCTCTTCTACCTCGATTTCTTTTGCAGATCTGAGCCTCTAAATTCATAATGAATAACTTTTGGATTCATGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E335997" ref_strand="-" ref_description="SGN-E335997 	[cTOE-6-N5]">
      <seq>catgtgtttctgggaaatgactgaattattgaacatggaaaattaaaccttttcttcaacttcaacaactatggtcacaaactctgtttcttctgtgtttttttttatccaaataatgagaggcgatgatgaagataatgatttctttggattctgggctaatcgggtcgggtatgaagattatacgacccgtatcttggcttggcaaattttgcagccatggcgtggtcggctctcttctacctcgatttcttttgcagatctgagcctctaaattcataatgaataacttttggattcatccaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="104053" stop="104960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104353" g_stop="104660" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="309" polyA_stop="326"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E335997" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335997" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="104353" e_stop="104660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTGTTTCTGGGAAATGACTGAATTATTGAACATGGAAAATTAAACCTTTTCTTCAACTTCAACAACTATGGTTACAAACTCTGTTTCTTCTGTGTTTTTTTTTATCCAAATAATGAGAGGCGATGATGAAGATAATGATTTCTTTGGATTCTGGGCTAATCGGGTCGGGTATGAAGATTATACGACCCGTATCTTGGCTTGGCAAATTTTGCAGCCATGGCGTGGTCGGCTCTCTTCTACCTCGATTTCTTTTGCAGATCTGAGCCTCTAAATTCATAATGAATAACTTTTGGATTCATACAAAA</genome_strand>
        <mrna_strand>CATGTGTTTCTGGGAAATGACTGAATTATTGAACATGGAAAATTAAACCTTTTCTTCAACTTCAACAACTATGGTCACAAACTCTGTTTCTTCTGTGTTTTTTTTTATCCAAATAATGAGAGGCGATGATGAAGATAATGATTTCTTTGGATTCTGGGCTAATCGGGTCGGGTATGAAGATTATACGACCCGTATCTTGGCTTGGCAAATTTTGCAGCCATGGCGTGGTCGGCTCTCTTCTACCTCGATTTCTTTTGCAGATCTGAGCCTCTAAATTCATAATGAATAACTTTTGGATTCATCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E344160" ref_strand="+" ref_description="SGN-E344160 	[cTOF-16-M20]">
      <seq>tttcttgtgtatctaatgcattgtgcatatgtttcggttgtcggtcctcactggctctgtttcaatgcaatgcaaacagagtacatgttcataatgccagcaagaggaaacaatgaggctatgatgatagttttgctgagctctttgagtcgggcataagagttctgtagctgctgtggcggggcaatctgaatttctggaaatttgcagctatggctgggcacaaagaactcaaagcccgaagacataatctgagcctcttgcatcatttctccattaccaaaaccaacagccctcttctagtccttttcctttcttcactatagaaaacagagggagcattaacatcagcagcagcagcagcagtagttggacctcattctgatttatgagctcaggtccaaagcatctcaaattccccgaatcctatgctaccagaatcaacgaagcagatgatatttgcttatcttggcttaaaaaaaggttgttcgggtttacagacaagtagatctgtatcttggcttggcaaaaacccatgatggtatgtgatttgagactcctcgatcacatgcaactggttcttttgcagctatggcgttgtctcctctctctctttgaccattcattagtagccagctgcgagtgtcaaaattgccagtaattcttctggacattgtttgatggggaaatcgttaaatgagacatcattgatgagaaatgtgaataaattattttttgattcggttttgctggtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="113771" stop="115127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114071" g_stop="114827" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E344160" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114071" e_stop="114827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTGTGTATCTAATGCATTGTGCATATGTTTCGGTTGTCGGTCCTCACTGGCTCTGTTTCAATGCAATGCAAACAGAGTACATGTTCATAATGCCAGCAAGAGGAAACAATGAGGCTATGATGATAGTTTTGCTGAGCTCTTTGAGTCGGGCATAAGAGTTCTGTAGCTGCTGTGGCGGGGCAATCTGAATTTCTGGAAATTTGCAGCTATGGCTGGGCACAAAGAACTCAAAGCCCGAAGACATAATCTGAGCCTCTTGCATCATTTCTCCATTACCAAAACCAACAGCCCTCTTCTAGTCCTTTTCCTTTCTTCACTATAGAAAACAGAGGGAGCATTAACATCAGCAGCAGCAGCAGCAGTAGTTGGACCTCATTCTGATTTATGAGCTCAGGTCCAAAGCATCTCAAATTCCCCGAATCCTATGCTACCAGAATCAACGAAGCAGATGATATTTGCTTATCTTGGCTTAAAAAAAGGTTGTTCGGGTTTACAGACAAGTAGATCTGTATCTTGGCTTGGCAAAAACCCATGATGGTATGTGATTTGAGACTCCTCGATCACATGCAACTGGTTCTTTTGCAGCTATGGCGTTGTCTCCTCTCTCTCTTTGACCATTCATTAGTAGCCAGCTGCGAGTGTCAAAATTGCCAGTAATTCTTCTGGACATTGTTTGATGGGGAAATCGTTAAATGAGACATCATTGATGAGAAATGTGAATAATTTATTTTTTGATTCGGTTTTGCTGGTAAG</genome_strand>
        <mrna_strand>TTTCTTGTGTATCTAATGCATTGTGCATATGTTTCGGTTGTCGGTCCTCACTGGCTCTGTTTCAATGCAATGCAAACAGAGTACATGTTCATAATGCCAGCAAGAGGAAACAATGAGGCTATGATGATAGTTTTGCTGAGCTCTTTGAGTCGGGCATAAGAGTTCTGTAGCTGCTGTGGCGGGGCAATCTGAATTTCTGGAAATTTGCAGCTATGGCTGGGCACAAAGAACTCAAAGCCCGAAGACATAATCTGAGCCTCTTGCATCATTTCTCCATTACCAAAACCAACAGCCCTCTTCTAGTCCTTTTCCTTTCTTCACTATAGAAAACAGAGGGAGCATTAACATCAGCAGCAGCAGCAGCAGTAGTTGGACCTCATTCTGATTTATGAGCTCAGGTCCAAAGCATCTCAAATTCCCCGAATCCTATGCTACCAGAATCAACGAAGCAGATGATATTTGCTTATCTTGGCTTAAAAAAAGGTTGTTCGGGTTTACAGACAAGTAGATCTGTATCTTGGCTTGGCAAAAACCCATGATGGTATGTGATTTGAGACTCCTCGATCACATGCAACTGGTTCTTTTGCAGCTATGGCGTTGTCTCCTCTCTCTCTTTGACCATTCATTAGTAGCCAGCTGCGAGTGTCAAAATTGCCAGTAATTCTTCTGGACATTGTTTGATGGGGAAATCGTTAAATGAGACATCATTGATGAGAAATGTGAATAAATTATTTTTTGATTCGGTTTTGCTGGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E284983" ref_strand="+" ref_description="SGN-E284983 	[cLER-19-K23]">
      <seq>tcaaagcttagcaaggcatttgctgcagcatgtttatattacaattatacacaaacagaaaaatgtttcaatttagaaggtggtactgattctcatggtcttcatggttgggattggcaggcatgtacagagatggttatgccaatgacttgttcaaatgaaagtatgtttcctccatcttcctttagctacaaggaattctcaaaagattgtaagaagcaatttggagtaaaacctagaccacattggatcactactgaatttggtggctatagaattgagcaagttctcaagagatttggcagcaacatgatattctctaatggaatgcaagatccttggagcagaggaggtgtattgaaaaatatatcatctagcattgtggctttggtaactcanaaaggtgcacaccatgttgactttagatcagagacaaagaatgacccagactggttaattatgcaaaggaagcaagaagtggctattattgaaaagtggctagaagagtactataaagatctcaaacaaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="119346" stop="121300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119646" g_stop="119765" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119766" i_stop="119849" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119850" g_stop="120002" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="273" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120003" i_stop="120317" i_length="315">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120318" g_stop="120397" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="353" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120398" i_stop="120710" i_length="313">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120711" g_stop="120760" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="403" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120761" i_stop="120870" i_length="110">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120871" g_stop="121000" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="533" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E284983" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119646" e_stop="119765"/>
          <exon e_start="119850" e_stop="120002"/>
          <exon e_start="120318" e_stop="120397"/>
          <exon e_start="120711" e_stop="120760"/>
          <exon e_start="120871" e_stop="121000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGCTTAGCAAGGCATTTGCTGCAGCAAGTTTATATTACAATTATACACAAACAGAAAAATGTTTCAATTTAGAAGGTGGTACTGATTCTCATGGTCTTCATGGTTGGGATTGGCAGGTATATAAAAACTTTACATAATACACATTTTATTTATCTTTCTTGTACGTGTCAGTGACATATTTAGAATTTATTCGTTTTCAGGCATGTACAGAGATGGTTATGCCAATGACTTGTTCAAATGAAAGTATGTTTCCTCCATCTTCCTTTAGCTACAAGGAATTCTCAAAAGATTGTAAGAAGCAATTTGGAGTAAAACCTAGACCACATTGGATCACTACTGAATTTGGTGGCTATGTGAGTTTTCATCCTTTTTTTCATCTGATATTTGATATTCGTAAAGGATATACATAGAAAGAGAGATTACTCCCACTTTCTTTTATATTCTTTATGTTGTAAGACATGTACGAACGTTCTTCACAACCATTAAAAATAGTAGAAAAATGATAAATACTATTTCATTTTAAAATTCTCGAATATGAACACTTTATAATGGGTAGATATCAAATTTTAGAGAAAAGTATTTTTAAAAAATGTTCATGACATATTTTTGATTTCAATATAATAAGATTCTAAAATATGTCTATAATTTCTCTTTTTTTATAATATCAGAGAATTGAGCAAGTTCTCAAGAGATTTGGCAGCAACATGATATTCTCTAATGGAATGCAAGATCCTTGGAGCAGAGGAGGGTAAGTTAATGAGAGTATTATAACTTTTTATTTATACTGATAATATAAATAATTTTTACATTATCAATTAACTTAACAATGATTATCAATATCGTCTATCAAAAATAGAAATAATAACATAAAAAGATAAAACAAGTTATCTACTATAATTGATAAGTAGCTTTTGATTTGAAACGTATACACATGAGATTTTTTTTAGTTAAAAATATATAAATGAAATAAAAACATATTTAGTATGATTTAGCAAACGTTAAATTTTGAATTTGCCTTTCGAAATTGATTATTTTTGTTTCCATTCTTCTTTTTATGACAGTGTATTGAAAAATATATCATCTAGCATTGTGGCTTTGGTAACTCAGAAAGGTATATAATATGCTTTCGTATATCATTATTTTAATTGAATTAAACTTAGAGATATTGATTTATTTTATTATTATTAATTTCATAAATATTTTTTTTTTGTAATTAATTAGGTGCACACCATGTTGACTTTAGATCAGAGACAAAGAATGACCCAGACTGGTTAATTATGCAAAGGAAGCAAGAAGTGGCTATTATTGAAAAGTGGCTAGAAGAGTACTATAAAGATCTCAAACAAAATTA</genome_strand>
        <mrna_strand>TCAAAGCTTAGCAAGGCATTTGCTGCAGCATGTTTATATTACAATTATACACAAACAGAAAAATGTTTCAATTTAGAAGGTGGTACTGATTCTCATGGTCTTCATGGTTGGGATTGGCAG....................................................................................GCATGTACAGAGATGGTTATGCCAATGACTTGTTCAAATGAAAGTATGTTTCCTCCATCTTCCTTTAGCTACAAGGAATTCTCAAAAGATTGTAAGAAGCAATTTGGAGTAAAACCTAGACCACATTGGATCACTACTGAATTTGGTGGCTAT...........................................................................................................................................................................................................................................................................................................................AGAATTGAGCAAGTTCTCAAGAGATTTGGCAGCAACATGATATTCTCTAATGGAATGCAAGATCCTTGGAGCAGAGGAGG.........................................................................................................................................................................................................................................................................................................................TGTATTGAAAAATATATCATCTAGCATTGTGGCTTTGGTAACTCANAAAG..............................................................................................................GTGCACACCATGTTGACTTTAGATCAGAGACAAAGAATGACCCAGACTGGTTAATTATGCAAAGGAAGCAAGAAGTGGCTATTATTGAAAAGTGGCTAGAAGAGTACTATAAAGATCTCAAACAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E371962" ref_strand="-" ref_description="SGN-E371962 	[TUS-30-C20]">
      <seq>ttcaaatgaaagtatgtttcctccatcttcctttagctacaaggaattctcaaaagattgtaagaagcaatttggagtaaaacctagaccacattggatcactactgaatttggtggctatagaattgagcaagttctcaagagatttggcagcaacatgatattctctaatggaatgcaagatccttggagcagaggaggtgtattgaaaaatatatcatctagcattgtggctttggtaactcagaaaggtgcacaccatgttgactttagatcagagacaaagaatgacccagactggttaattatgcaaaggaagcaagaagtggctattattgaaaagtggctagaagagtactataaagatctcaaacaaaattagatacaatatgaatatagtgtcactttagacacatcatgtaatggacattattgtggaagaaaataaaaaggtgtcataaattaaattgaattatattaatttgagttttatttctataggttaatcttttgaaaaaaaatatatacgagatatatatgtattttgaataggtatatatttttaatatacttatctaaattttcactaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="119582" stop="121508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119882" g_stop="120002" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120003" i_stop="120317" i_length="315">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120318" g_stop="120397" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="201" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120398" i_stop="120710" i_length="313">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120711" g_stop="120760" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="251" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120761" i_stop="120870" i_length="110">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120871" g_stop="121216" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="597" r_length="346" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E371962" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371962" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="119882" e_stop="120002"/>
          <exon e_start="120318" e_stop="120397"/>
          <exon e_start="120711" e_stop="120760"/>
          <exon e_start="120871" e_stop="121216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAATGAAAGTATGTTTCCTCCATCTTCCTTTAGCTACAAGGAATTCTCAAAAGATTGTAAGAAGCAATTTGGAGTAAAACCTAGACCACATTGGATCACTACTGAATTTGGTGGCTATGTGAGTTTTCATCCTTTTTTTCATCTGATATTTGATATTCGTAAAGGATATACATAGAAAGAGAGATTACTCCCACTTTCTTTTATATTCTTTATGTTGTAAGACATGTACGAACGTTCTTCACAACCATTAAAAATAGTAGAAAAATGATAAATACTATTTCATTTTAAAATTCTCGAATATGAACACTTTATAATGGGTAGATATCAAATTTTAGAGAAAAGTATTTTTAAAAAATGTTCATGACATATTTTTGATTTCAATATAATAAGATTCTAAAATATGTCTATAATTTCTCTTTTTTTATAATATCAGAGAATTGAGCAAGTTCTCAAGAGATTTGGCAGCAACATGATATTCTCTAATGGAATGCAAGATCCTTGGAGCAGAGGAGGGTAAGTTAATGAGAGTATTATAACTTTTTATTTATACTGATAATATAAATAATTTTTACATTATCAATTAACTTAACAATGATTATCAATATCGTCTATCAAAAATAGAAATAATAACATAAAAAGATAAAACAAGTTATCTACTATAATTGATAAGTAGCTTTTGATTTGAAACGTATACACATGAGATTTTTTTTAGTTAAAAATATATAAATGAAATAAAAACATATTTAGTATGATTTAGCAAACGTTAAATTTTGAATTTGCCTTTCGAAATTGATTATTTTTGTTTCCATTCTTCTTTTTATGACAGTGTATTGAAAAATATATCATCTAGCATTGTGGCTTTGGTAACTCAGAAAGGTATATAATATGCTTTCGTATATCATTATTTTAATTGAATTAAACTTAGAGATATTGATTTATTTTATTATTATTAATTTCATAAATATTTTTTTTTTGTAATTAATTAGGTGCACACCATGTTGACTTTAGATCAGAGACAAAGAATGACCCAGACTGGTTAATTATGCAAAGGAAGCAAGAAGTGGCTATTATTGAAAAGTGGCTAGAAGAGTACTATAAAGATCTCAAACAAAATTAGATACAATATGAATATAGTGTCACTTTAGACACATCATGTAATGGACATTATTGTGGAAGAAAATAAAAAGGTGTCATAAATTAAATTGAATTATATTAATTTGAGTTTTATTTCTATAGGTTAATCTTTTGAAAAAAAATATATACGAGATATATATGTATTTTGAATAGGTATATATTTTTAATATACTTATCTAAATTTTCACTACTTTACTA</genome_strand>
        <mrna_strand>TTCAAATGAAAGTATGTTTCCTCCATCTTCCTTTAGCTACAAGGAATTCTCAAAAGATTGTAAGAAGCAATTTGGAGTAAAACCTAGACCACATTGGATCACTACTGAATTTGGTGGCTAT...........................................................................................................................................................................................................................................................................................................................AGAATTGAGCAAGTTCTCAAGAGATTTGGCAGCAACATGATATTCTCTAATGGAATGCAAGATCCTTGGAGCAGAGGAGG.........................................................................................................................................................................................................................................................................................................................TGTATTGAAAAATATATCATCTAGCATTGTGGCTTTGGTAACTCAGAAAG..............................................................................................................GTGCACACCATGTTGACTTTAGATCAGAGACAAAGAATGACCCAGACTGGTTAATTATGCAAAGGAAGCAAGAAGTGGCTATTATTGAAAAGTGGCTAGAAGAGTACTATAAAGATCTCAAACAAAATTAGATACAATATGAATATAGTGTCACTTTAGACACATCATGTAATGGACATTATTGTGGAAGAAAATAAAAAGGTGTCATAAATTAAATTGAATTATATTAATTTGAGTTTTATTTCTATAGGTTAATCTTTTGAAAAAAAATATATACGAGATATATATGTATTTTGAATAGGTATATATTTTTAATATACTTATCTAAATTTTCACTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E282629" ref_strand="+" ref_description="SGN-E282629 	[cLER-15-O5]">
      <seq>tcaaatgaaagtatgtttcctccatcttcctttagctacaaggaattctcaaaagattgtaagaagcaatttggagtaaaacctagaccacattggatcactactgaatttggtggctatagaattgagcaagttctcaagagatttggcagcaacatgatattctctaatggaatgcaagatccttggagcagaggaggtgtattgaaaaatatatcatctagcattgtggctttggtaactcagaaaggtgcacaccatgttgactttagatcagagacaaagaatgacccagactggttaattatgcaaaggaagcaagaagtggctattattgaaaagtggctagaagagtactataaagatctcaaacaaaattagatacaatatgaatatagtgtcactttagacacatcatgtaatggacattattgtggaagaaaataaaaaggtgtcataaattaaattgaattatattaatttgagttttatttctataggttaatcttttgaaaaaaaatatatacgagatatatatgtattttgaataggtatatatttttaatatacttatctaaaatttcactaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="119583" stop="121508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119883" g_stop="120002" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120003" i_stop="120317" i_length="315">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120318" g_stop="120397" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="200" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120398" i_stop="120710" i_length="313">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120711" g_stop="120760" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="250" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120761" i_stop="120870" i_length="110">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120871" g_stop="121208" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="588" r_length="338" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="589" polyA_stop="598"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E282629" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119883" e_stop="120002"/>
          <exon e_start="120318" e_stop="120397"/>
          <exon e_start="120711" e_stop="120760"/>
          <exon e_start="120871" e_stop="121208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGAAAGTATGTTTCCTCCATCTTCCTTTAGCTACAAGGAATTCTCAAAAGATTGTAAGAAGCAATTTGGAGTAAAACCTAGACCACATTGGATCACTACTGAATTTGGTGGCTATGTGAGTTTTCATCCTTTTTTTCATCTGATATTTGATATTCGTAAAGGATATACATAGAAAGAGAGATTACTCCCACTTTCTTTTATATTCTTTATGTTGTAAGACATGTACGAACGTTCTTCACAACCATTAAAAATAGTAGAAAAATGATAAATACTATTTCATTTTAAAATTCTCGAATATGAACACTTTATAATGGGTAGATATCAAATTTTAGAGAAAAGTATTTTTAAAAAATGTTCATGACATATTTTTGATTTCAATATAATAAGATTCTAAAATATGTCTATAATTTCTCTTTTTTTATAATATCAGAGAATTGAGCAAGTTCTCAAGAGATTTGGCAGCAACATGATATTCTCTAATGGAATGCAAGATCCTTGGAGCAGAGGAGGGTAAGTTAATGAGAGTATTATAACTTTTTATTTATACTGATAATATAAATAATTTTTACATTATCAATTAACTTAACAATGATTATCAATATCGTCTATCAAAAATAGAAATAATAACATAAAAAGATAAAACAAGTTATCTACTATAATTGATAAGTAGCTTTTGATTTGAAACGTATACACATGAGATTTTTTTTAGTTAAAAATATATAAATGAAATAAAAACATATTTAGTATGATTTAGCAAACGTTAAATTTTGAATTTGCCTTTCGAAATTGATTATTTTTGTTTCCATTCTTCTTTTTATGACAGTGTATTGAAAAATATATCATCTAGCATTGTGGCTTTGGTAACTCAGAAAGGTATATAATATGCTTTCGTATATCATTATTTTAATTGAATTAAACTTAGAGATATTGATTTATTTTATTATTATTAATTTCATAAATATTTTTTTTTTGTAATTAATTAGGTGCACACCATGTTGACTTTAGATCAGAGACAAAGAATGACCCAGACTGGTTAATTATGCAAAGGAAGCAAGAAGTGGCTATTATTGAAAAGTGGCTAGAAGAGTACTATAAAGATCTCAAACAAAATTAGATACAATATGAATATAGTGTCACTTTAGACACATCATGTAATGGACATTATTGTGGAAGAAAATAAAAAGGTGTCATAAATTAAATTGAATTATATTAATTTGAGTTTTATTTCTATAGGTTAATCTTTTGAAAAAAAATATATACGAGATATATATGTATTTTGAATAGGTATATATTTTTAATATACTTATCTAAATTTTCACTA</genome_strand>
        <mrna_strand>TCAAATGAAAGTATGTTTCCTCCATCTTCCTTTAGCTACAAGGAATTCTCAAAAGATTGTAAGAAGCAATTTGGAGTAAAACCTAGACCACATTGGATCACTACTGAATTTGGTGGCTAT...........................................................................................................................................................................................................................................................................................................................AGAATTGAGCAAGTTCTCAAGAGATTTGGCAGCAACATGATATTCTCTAATGGAATGCAAGATCCTTGGAGCAGAGGAGG.........................................................................................................................................................................................................................................................................................................................TGTATTGAAAAATATATCATCTAGCATTGTGGCTTTGGTAACTCAGAAAG..............................................................................................................GTGCACACCATGTTGACTTTAGATCAGAGACAAAGAATGACCCAGACTGGTTAATTATGCAAAGGAAGCAAGAAGTGGCTATTATTGAAAAGTGGCTAGAAGAGTACTATAAAGATCTCAAACAAAATTAGATACAATATGAATATAGTGTCACTTTAGACACATCATGTAATGGACATTATTGTGGAAGAAAATAAAAAGGTGTCATAAATTAAATTGAATTATATTAATTTGAGTTTTATTTCTATAGGTTAATCTTTTGAAAAAAAATATATACGAGATATATATGTATTTTGAATAGGTATATATTTTTAATATACTTATCTAAAATTTCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E301806" ref_strand="+" ref_description="SGN-E301806 	[cLEW-25-F3]">
      <seq>tttactgtaagaccttcaagaaagtagatggaaagtagcagtactagttagttaatcagcacttattttcagctgaacatctttaacaatttgaaaaatcccaattaaccccataacagtagatccattttgccttgtagatctcactcccaatttgctctcaaagcaaaaaggaaacatggcaaggcaatctgggaattgcttaagatgttgtttagtaatttttgctgtagtttctgctctttgtgtatctggtcctgctatttattggaagttcaagaaacttaaagttaaagctgctcaatcttgtatgccttgtaaatgtgactgttctcctcctctttctttgcttgaagttgctcctggcttggcgaatcttacaatcacagactgcggaaaagatgatccggaccttaaggaggagatggagaaacagttcgttgatttattatcggaagagctgaaactgcaggaggctgttgacaaggagcacgcccatcatatgaacatcacctttgtggaggcgaggaggttagctaccgagtaccaaaaggaggctgagaaatgcattgctacaacggaaacttgtgaagtcgggagagaaagagctgttgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="121440" stop="126906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121740" g_stop="122104" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122105" i_stop="125439" i_length="3335">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125440" g_stop="125463" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="389" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125464" i_stop="126378" i_length="915">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126379" g_stop="126606" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="617" r_length="228" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E301806" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121740" e_stop="122104"/>
          <exon e_start="125440" e_stop="125463"/>
          <exon e_start="126379" e_stop="126606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTGTAAGACCTTCAAGAAAGTAGATGGAAAGTAGCAGTACTAGTTAATTAATCAGCACTTATTTTCAGCTGAACATCTTTAACAATTTGAAAAATCCCAATTAACCCCATAACAGTAGATCCATTTTGCCTTGTAGATCTCACTCCCAATTTGCTCTCAAAGCAAAAAGGAAACATGGCAAGGCAATCTGGGAATTGCTTAAGATGTTGTTTAGTAATTTTTGCTGTAGTTTCTGCTCTTTGTGTATCTGGTCCTGCTATTTATTGGAAGTTCAAGAAACTTAAAGTTAAAGCTGCTCAATCTTGTATGCCTTGTAAATGTGACTGTTCTCCTCCTCTTTCTTTGCTTGAAGTTGCTCCTGGTATGTCATTTTTAGATCCAAGTTTATGCTTTATATTAAATAAAGATCATGTTTTTATAGTTTTTTTTTTGTTTGGGGTTTCTTTATTTGATTAAATAAAGAAATGGTGTTGATTTCATGCTCTGCTTGTCAAAAAGATCATGTTTTTAAGGTTTGTTGTTTGGTTTCCTTTTATGGGGTTCCTTTATTTGATTCGTTCTTTTGAATGGTGTTAGCTTTATTGTAAGTTTTGAGGTTCAAGTTTGGGGATCTTCTTGTCTTTGGTGAATTGGGGTTTTGAGCTGCTAAGATGGAATTAGAATTTCGAGTTTATGAGTTTTAGATTCTAGATGAGGTATAATGTAACCCCACCAGTGGGGTCTGGGGAGATTTTTGAGCGTATGCAGACCTTATCTCTACCGGAGGACGGAGGTAGAGAGACTGTTTTCGATAGACCTTAGGCTCAAGAAAAAAGAATTAACAGGAGTAAGTAAGTCATGTCAAAATACTATAAGAGATTCTAGAAATATAGCGGATCCAGATAAATTACTTGTACGTATTTTAGTGGATTTGTAAGCATAAAATAGTGGATTTGAACCAAAACTATCAAGAAACTTCACAGCAGCGCCTCCCCTGCTGAGCTGTCGTATGGACATCAATACTTGCTTATTTGGTTTTTTCTCATGTTGACCATTGGATTATGTGTTTATAATGTTAGATTGGCTGTAGATTTTCTGTTGTATGTGAAGAGTTTATTAAGTAACCTCTTAATTATCATGTTGATTGTTATCTTTTGCTTCAAACAAACTGCTGAAGTGCTCTTTGATTGCAAGTTTCGACCTATTTTTATGATCTACTTAACAAATTCTATCTTTTCTTTTATAGGTTTGTAACTTGGTTTTCATTTTTGGTTTTCTTTATTTGATTCATTCTTTTGGACGGTGTTATTTTTATTGCAAGTTTTGAGGGTTGTGTATCTTGTCTTTTGTGATTTGGGTTCCGGAGTTGTCATATGGACGTCAGTGCTTGTTTTCGGTATTTTCTCGGGTTGAGGTTGGACTGTGGGTTATAGAATTTTGGATTGACTGTAGATTTTCAATTGCATGTGAAGAGTTTATTAAGTGACCTCTTAATTGTCTTGTTCACTGTTATCTTCTGCTGCAAAAAAAAAAACCCTGCTCTTTGATTGCCAAGTTTCAGCCAATTGGTTCTTGCAAAGATAAGATCTCGGTGTAATGCTGATTGTAGCAATGTTATCGGATTTGATTTGCCTAAAGACCCTTCTGGTCCATCTCTTTTGCAGCATTGATTGTCTTCGAAAACATGACTTGCCTAGGTGGAAGTAAGTAAATAAAAAAGATTAGGAAGTGAATAGATATTTAATCCTGTCTGCAATATGGGATTTGGTCACTCTAATGATCTGAGGCTGATCAAATAACGAACTTGCTCCCCTCGTACCTTATCAAAAACTTGCTCCCCTTGCTTAAAGTGGGGATGAAGGTCTTACCTAAAAAAAATCAGACATTATTTTGATAAAATAAATTAGTAATCTTATGATTATTGCTTGAACTTAGTAAAGATTGAGGTCGGATAGGATGTAGTAGAAGCTCCAGAGAACTTTGATTGACACGCTCATGAAGGAAAATAGGAGAGTTGTGTCTACGTACTTTTGCACAAAAGCTCTCTGCTACATTTTTTCTTCCTGGTTTGGAAGCATGTTAATCAAGTCTCACCTTAAGTTTCTACCTTGTTGTCCCCATAATTAAGCAAACAATGAAAGATGAGCTTAGTAAAGATGTGATTTTTTGCTTATGTGGTAACAACGTACTAAAGGTTCGTGACAGGATGTATTCTGCTTTTGTGTTTGGGTTAAATCCACCGAACCAGAACAGATTAACAAATGCTTTCATTAAGTATCTTGTTCTTTATCCTCAAAAAAATTTAATTATCTTGTTCCTCATGCACCTTATCAGAAACTTGTTGCCTAGCAAAAAGTGGGGATGAAGGTCTTGCTTCTAAAGAATAAAGACATCATTTATGTAAAATAAATGGCTAATCTTACGACTATTGCTAGATCTTATCAACGATTGAGGTTTAGTAGAAGCTTAATAGAAGCTTTGATTGATAGGCTCTGACAAAATAAGTGAGCTCTGCTAGAGACTGTCACAAAGCTCTATGTTAGACATTTTTCCTTCATGGTTTTGGAGTTTATCGATCAAGCCTCACATCAAGTTTCTACTTTCCTAGCCCTATAGTTAAGCTAACTATGAATAAATGAGAGAATTCTTTCTGTCCCGTTGAACTGACAGTTCCTTCTAATTTTAGTGAAAAATGATCTGTGTAGACGATACCTACTGCTAGTTTTGGGTTGAGGCATAGTTATACTATTATAGTGTTTCAAGAATCCACCCTTGCTGAAAACTAAGGGCTGAAGGATGTAGAACTTTAATTACATGCAATATTTATTGTTTATGTTCTTTTCCGATACCTCTAAAAGCATGACCTGAAGTTCCCATCCTACATTGTACTTTTTAAAAAGTACCATGCAGAGTCTCCGTGCTGGATCAACTTTTCGATTCTTCTTGAGAAGCGGAGGTAATTCTGAAGAAGTACCGAGCACTAAATCTCCTCATTTGTTCTTTTTTTACCAACAAATGATACTTACAAACTTTACGTATTACATGTAATGAGGACATAATTGTTAGTAAACTGACATTAGGAATGGAATCCTTTCCTTTTCGCTTGGGATACTTACATACCCACTTATCTGTTTGGTGTTGCAATGTTCTTTTGTGTCCTATGTGAGTCTGGAGATCCTAAAATGACATTTAAGTAGAGAACACATTATATGATTGTTGGAGACTTCTTCATTGCGTTTGTCCTTTCGTATTCTTGTATAGTGCAAGTGCCGTCTTTATGCTTTTTTATACTTGGGCATATATCACGCTCCGAAGCTTATGATCATAATGACCTTATACTTTGTTGAAAAGGTTATTGTTGCTAGAGTTTAAGTAATATGCACCGTCTATGTAAATAAGGTATCTTATTTTCAACATCTCAAATCTCACATTTTAAGGAGGCTTACGTGTAGATAACCTTTGAATGACCTGATGGTGTAAATAGTTATTTATGTTTACAGTTTATAAAACTTTAAACTCATATTTCTATAGCTGGTCGAGGTGTTAAACTGAACTCCGTCACATGTGACATGCCTTCTTTATTGCTAGTTTTGGATATCTTTGTCTTTTGATATTTCAATTCTTGGTGAAAATTCTATAAATAATCATGTATAAGGTGCAGTTGATGAAGTTTCAATGCCAATAACATTGTCTTATTTTTGGTTTCCGCTTGTGCAGGCTTGGCGAATCTTACAATCACAGGTGTGCTTTCTAATTAAATTCCTCTTCACTATTTACCCGTTCTTCTTCTCTTCCAAAAAGAATCGCAAGTGACCTTGGATGTTTTTCTTCCCTTAATACAATTATTTCTAAGATTATGCAATACTGAAAGGCCTTTTGATGAATACAAAAAAATACAGTCCTCGAGAATTGAGGCCAATTAGATGATAGTGACAAACATCCCTAAATTGAATTTCACTTTGACGATGGATACTTAAACCTCTGAATGATTGAACCTAATCGAATTTGAGTTTTCCTTTTAAGTAGGTTCTGACTTGGAGATTCGATCCGTTAGATCTTTGGACCAAGCTACTTCATTAAATAAGCACTGTCTGACTATTAGCCTTCTATAGATGTGTTGCCTAGATTCTCTTTTATGTAGCTTGTCGTCCTATAGTTTATTTTGGACCCTCAGACGCGGTTATGAGCAAGTATAAAGTGTTTTAGTGCTAAAACCAGAAAGTCTCCGGAGTGAAAAAGACGAAGGAAACAAGACGATAGAAGCTACATTGGTTTAAGTAACACGCTCACAGATGCTCTATGTAATTTACAATGAAAGAAGTATGTTCCGCACCACAAAAACAGTTCAGAGATATTTGTTGTGATTTTCTCTTACCGTGTGTCTTCCACTTCTCCATATTACAAACTCAAAAATGTATTCATACTGCTCTTGCATGTAATGCTACTAGGAGCTTTGTTATCTAGAATCTATGTTGCTCGGACTCTCCTAAAATGTTGCCCCGTTTCGGAATCTCTAAAAAGTACTACTTATGGAGGATCCAGCACACACCCGGCAGCGTATTTGAATAGTCCGAGCGGCATAGTCTAGAACACATGCAAAAGATTGTTTTAAGCTCAAATGACATGCTACATAGTAATGTTTCCTATTGGCAACAGACTGCGGAAAAGATGATCCGGACCTTAAGGAGGAGATGGAGAAACAGTTCGTTGATTTATTATCGGAAGAGCTGAAACTGCAGGAGGCTGTTGACAAGGAGCACGCCCATCATATGAACATCACCTTTGTGGAGGCGAGGAGGTTAGCTACCGAGTACCAAAAGGAGGCTGAGAAATGCATTGCTACAACGGAAACTTGTGAAGTCGGGAGAGAAAGAGCTGTTGTGT</genome_strand>
        <mrna_strand>TTTACTGTAAGACCTTCAAGAAAGTAGATGGAAAGTAGCAGTACTAGTTAGTTAATCAGCACTTATTTTCAGCTGAACATCTTTAACAATTTGAAAAATCCCAATTAACCCCATAACAGTAGATCCATTTTGCCTTGTAGATCTCACTCCCAATTTGCTCTCAAAGCAAAAAGGAAACATGGCAAGGCAATCTGGGAATTGCTTAAGATGTTGTTTAGTAATTTTTGCTGTAGTTTCTGCTCTTTGTGTATCTGGTCCTGCTATTTATTGGAAGTTCAAGAAACTTAAAGTTAAAGCTGCTCAATCTTGTATGCCTTGTAAATGTGACTGTTCTCCTCCTCTTTCTTTGCTTGAAGTTGCTCCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGCGAATCTTACAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCGGAAAAGATGATCCGGACCTTAAGGAGGAGATGGAGAAACAGTTCGTTGATTTATTATCGGAAGAGCTGAAACTGCAGGAGGCTGTTGACAAGGAGCACGCCCATCATATGAACATCACCTTTGTGGAGGCGAGGAGGTTAGCTACCGAGTACCAAAAGGAGGCTGAGAAATGCATTGCTACAACGGAAACTTGTGAAGTCGGGAGAGAAAGAGCTGTTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E299656" ref_strand="+" ref_description="SGN-E299656 	[cLEW-1-I11]">
      <seq>tttactgtttgaccttcaagaaagtagatggaaagtagcagtactagttaattaatcagcacttattttcagctgaacatctttaacaatttgaaaaatcccaattaaccccataacagtagatccattttgccttgtagatctcactcccaatttgctctcaaagcaaaaaggaaacatggcaaggcaatctgggaattgcttaagatgttgtttagtaatttttgctgtagtttctgctctttgtgtatctggtcctgctatttattggaagttcaagaaacttaaagttaaagctgctcaatcttgtatgccttgtaaatgtgactgttctcctcctctttctttgcttgaagttgctcctggcttggcgaatcttacaatcacagactgcggaaaagatgatccggaccttaaggaggagatggagaaacagttcgttgatttattatcggaagagctgaaactgcaggaggctgttgacaaggagcacgcccatcatatgaacatcacctttgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="121440" stop="126810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121740" g_stop="122104" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122105" i_stop="125439" i_length="3335">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125440" g_stop="125463" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="389" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125464" i_stop="126378" i_length="915">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126379" g_stop="126510" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="521" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E299656" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121740" e_stop="122104"/>
          <exon e_start="125440" e_stop="125463"/>
          <exon e_start="126379" e_stop="126510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTGTAAGACCTTCAAGAAAGTAGATGGAAAGTAGCAGTACTAGTTAATTAATCAGCACTTATTTTCAGCTGAACATCTTTAACAATTTGAAAAATCCCAATTAACCCCATAACAGTAGATCCATTTTGCCTTGTAGATCTCACTCCCAATTTGCTCTCAAAGCAAAAAGGAAACATGGCAAGGCAATCTGGGAATTGCTTAAGATGTTGTTTAGTAATTTTTGCTGTAGTTTCTGCTCTTTGTGTATCTGGTCCTGCTATTTATTGGAAGTTCAAGAAACTTAAAGTTAAAGCTGCTCAATCTTGTATGCCTTGTAAATGTGACTGTTCTCCTCCTCTTTCTTTGCTTGAAGTTGCTCCTGGTATGTCATTTTTAGATCCAAGTTTATGCTTTATATTAAATAAAGATCATGTTTTTATAGTTTTTTTTTTGTTTGGGGTTTCTTTATTTGATTAAATAAAGAAATGGTGTTGATTTCATGCTCTGCTTGTCAAAAAGATCATGTTTTTAAGGTTTGTTGTTTGGTTTCCTTTTATGGGGTTCCTTTATTTGATTCGTTCTTTTGAATGGTGTTAGCTTTATTGTAAGTTTTGAGGTTCAAGTTTGGGGATCTTCTTGTCTTTGGTGAATTGGGGTTTTGAGCTGCTAAGATGGAATTAGAATTTCGAGTTTATGAGTTTTAGATTCTAGATGAGGTATAATGTAACCCCACCAGTGGGGTCTGGGGAGATTTTTGAGCGTATGCAGACCTTATCTCTACCGGAGGACGGAGGTAGAGAGACTGTTTTCGATAGACCTTAGGCTCAAGAAAAAAGAATTAACAGGAGTAAGTAAGTCATGTCAAAATACTATAAGAGATTCTAGAAATATAGCGGATCCAGATAAATTACTTGTACGTATTTTAGTGGATTTGTAAGCATAAAATAGTGGATTTGAACCAAAACTATCAAGAAACTTCACAGCAGCGCCTCCCCTGCTGAGCTGTCGTATGGACATCAATACTTGCTTATTTGGTTTTTTCTCATGTTGACCATTGGATTATGTGTTTATAATGTTAGATTGGCTGTAGATTTTCTGTTGTATGTGAAGAGTTTATTAAGTAACCTCTTAATTATCATGTTGATTGTTATCTTTTGCTTCAAACAAACTGCTGAAGTGCTCTTTGATTGCAAGTTTCGACCTATTTTTATGATCTACTTAACAAATTCTATCTTTTCTTTTATAGGTTTGTAACTTGGTTTTCATTTTTGGTTTTCTTTATTTGATTCATTCTTTTGGACGGTGTTATTTTTATTGCAAGTTTTGAGGGTTGTGTATCTTGTCTTTTGTGATTTGGGTTCCGGAGTTGTCATATGGACGTCAGTGCTTGTTTTCGGTATTTTCTCGGGTTGAGGTTGGACTGTGGGTTATAGAATTTTGGATTGACTGTAGATTTTCAATTGCATGTGAAGAGTTTATTAAGTGACCTCTTAATTGTCTTGTTCACTGTTATCTTCTGCTGCAAAAAAAAAAACCCTGCTCTTTGATTGCCAAGTTTCAGCCAATTGGTTCTTGCAAAGATAAGATCTCGGTGTAATGCTGATTGTAGCAATGTTATCGGATTTGATTTGCCTAAAGACCCTTCTGGTCCATCTCTTTTGCAGCATTGATTGTCTTCGAAAACATGACTTGCCTAGGTGGAAGTAAGTAAATAAAAAAGATTAGGAAGTGAATAGATATTTAATCCTGTCTGCAATATGGGATTTGGTCACTCTAATGATCTGAGGCTGATCAAATAACGAACTTGCTCCCCTCGTACCTTATCAAAAACTTGCTCCCCTTGCTTAAAGTGGGGATGAAGGTCTTACCTAAAAAAAATCAGACATTATTTTGATAAAATAAATTAGTAATCTTATGATTATTGCTTGAACTTAGTAAAGATTGAGGTCGGATAGGATGTAGTAGAAGCTCCAGAGAACTTTGATTGACACGCTCATGAAGGAAAATAGGAGAGTTGTGTCTACGTACTTTTGCACAAAAGCTCTCTGCTACATTTTTTCTTCCTGGTTTGGAAGCATGTTAATCAAGTCTCACCTTAAGTTTCTACCTTGTTGTCCCCATAATTAAGCAAACAATGAAAGATGAGCTTAGTAAAGATGTGATTTTTTGCTTATGTGGTAACAACGTACTAAAGGTTCGTGACAGGATGTATTCTGCTTTTGTGTTTGGGTTAAATCCACCGAACCAGAACAGATTAACAAATGCTTTCATTAAGTATCTTGTTCTTTATCCTCAAAAAAATTTAATTATCTTGTTCCTCATGCACCTTATCAGAAACTTGTTGCCTAGCAAAAAGTGGGGATGAAGGTCTTGCTTCTAAAGAATAAAGACATCATTTATGTAAAATAAATGGCTAATCTTACGACTATTGCTAGATCTTATCAACGATTGAGGTTTAGTAGAAGCTTAATAGAAGCTTTGATTGATAGGCTCTGACAAAATAAGTGAGCTCTGCTAGAGACTGTCACAAAGCTCTATGTTAGACATTTTTCCTTCATGGTTTTGGAGTTTATCGATCAAGCCTCACATCAAGTTTCTACTTTCCTAGCCCTATAGTTAAGCTAACTATGAATAAATGAGAGAATTCTTTCTGTCCCGTTGAACTGACAGTTCCTTCTAATTTTAGTGAAAAATGATCTGTGTAGACGATACCTACTGCTAGTTTTGGGTTGAGGCATAGTTATACTATTATAGTGTTTCAAGAATCCACCCTTGCTGAAAACTAAGGGCTGAAGGATGTAGAACTTTAATTACATGCAATATTTATTGTTTATGTTCTTTTCCGATACCTCTAAAAGCATGACCTGAAGTTCCCATCCTACATTGTACTTTTTAAAAAGTACCATGCAGAGTCTCCGTGCTGGATCAACTTTTCGATTCTTCTTGAGAAGCGGAGGTAATTCTGAAGAAGTACCGAGCACTAAATCTCCTCATTTGTTCTTTTTTTACCAACAAATGATACTTACAAACTTTACGTATTACATGTAATGAGGACATAATTGTTAGTAAACTGACATTAGGAATGGAATCCTTTCCTTTTCGCTTGGGATACTTACATACCCACTTATCTGTTTGGTGTTGCAATGTTCTTTTGTGTCCTATGTGAGTCTGGAGATCCTAAAATGACATTTAAGTAGAGAACACATTATATGATTGTTGGAGACTTCTTCATTGCGTTTGTCCTTTCGTATTCTTGTATAGTGCAAGTGCCGTCTTTATGCTTTTTTATACTTGGGCATATATCACGCTCCGAAGCTTATGATCATAATGACCTTATACTTTGTTGAAAAGGTTATTGTTGCTAGAGTTTAAGTAATATGCACCGTCTATGTAAATAAGGTATCTTATTTTCAACATCTCAAATCTCACATTTTAAGGAGGCTTACGTGTAGATAACCTTTGAATGACCTGATGGTGTAAATAGTTATTTATGTTTACAGTTTATAAAACTTTAAACTCATATTTCTATAGCTGGTCGAGGTGTTAAACTGAACTCCGTCACATGTGACATGCCTTCTTTATTGCTAGTTTTGGATATCTTTGTCTTTTGATATTTCAATTCTTGGTGAAAATTCTATAAATAATCATGTATAAGGTGCAGTTGATGAAGTTTCAATGCCAATAACATTGTCTTATTTTTGGTTTCCGCTTGTGCAGGCTTGGCGAATCTTACAATCACAGGTGTGCTTTCTAATTAAATTCCTCTTCACTATTTACCCGTTCTTCTTCTCTTCCAAAAAGAATCGCAAGTGACCTTGGATGTTTTTCTTCCCTTAATACAATTATTTCTAAGATTATGCAATACTGAAAGGCCTTTTGATGAATACAAAAAAATACAGTCCTCGAGAATTGAGGCCAATTAGATGATAGTGACAAACATCCCTAAATTGAATTTCACTTTGACGATGGATACTTAAACCTCTGAATGATTGAACCTAATCGAATTTGAGTTTTCCTTTTAAGTAGGTTCTGACTTGGAGATTCGATCCGTTAGATCTTTGGACCAAGCTACTTCATTAAATAAGCACTGTCTGACTATTAGCCTTCTATAGATGTGTTGCCTAGATTCTCTTTTATGTAGCTTGTCGTCCTATAGTTTATTTTGGACCCTCAGACGCGGTTATGAGCAAGTATAAAGTGTTTTAGTGCTAAAACCAGAAAGTCTCCGGAGTGAAAAAGACGAAGGAAACAAGACGATAGAAGCTACATTGGTTTAAGTAACACGCTCACAGATGCTCTATGTAATTTACAATGAAAGAAGTATGTTCCGCACCACAAAAACAGTTCAGAGATATTTGTTGTGATTTTCTCTTACCGTGTGTCTTCCACTTCTCCATATTACAAACTCAAAAATGTATTCATACTGCTCTTGCATGTAATGCTACTAGGAGCTTTGTTATCTAGAATCTATGTTGCTCGGACTCTCCTAAAATGTTGCCCCGTTTCGGAATCTCTAAAAAGTACTACTTATGGAGGATCCAGCACACACCCGGCAGCGTATTTGAATAGTCCGAGCGGCATAGTCTAGAACACATGCAAAAGATTGTTTTAAGCTCAAATGACATGCTACATAGTAATGTTTCCTATTGGCAACAGACTGCGGAAAAGATGATCCGGACCTTAAGGAGGAGATGGAGAAACAGTTCGTTGATTTATTATCGGAAGAGCTGAAACTGCAGGAGGCTGTTGACAAGGAGCACGCCCATCATATGAACATCACCTTTGTGG</genome_strand>
        <mrna_strand>TTTACTGTTTGACCTTCAAGAAAGTAGATGGAAAGTAGCAGTACTAGTTAATTAATCAGCACTTATTTTCAGCTGAACATCTTTAACAATTTGAAAAATCCCAATTAACCCCATAACAGTAGATCCATTTTGCCTTGTAGATCTCACTCCCAATTTGCTCTCAAAGCAAAAAGGAAACATGGCAAGGCAATCTGGGAATTGCTTAAGATGTTGTTTAGTAATTTTTGCTGTAGTTTCTGCTCTTTGTGTATCTGGTCCTGCTATTTATTGGAAGTTCAAGAAACTTAAAGTTAAAGCTGCTCAATCTTGTATGCCTTGTAAATGTGACTGTTCTCCTCCTCTTTCTTTGCTTGAAGTTGCTCCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGCGAATCTTACAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCGGAAAAGATGATCCGGACCTTAAGGAGGAGATGGAGAAACAGTTCGTTGATTTATTATCGGAAGAGCTGAAACTGCAGGAGGCTGTTGACAAGGAGCACGCCCATCATATGAACATCACCTTTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E306733" ref_strand="+" ref_description="SGN-E306733 	[cLEY-19-M24]">
      <seq>ttcaagaaagtagatggaaagtagcagtactagttaattaatcagcacttattttcagctgaacatctttaacaatttgaaaaatcccaattaaccccataacagtagatccattttgccttgtagatctcactcccaatttgctctcaaagcaaaaaggaaacatggcaaggcaatctgggaattgcttaagatgttgtttagtaatttttgctgtagtttctgctctttgtgtatctggtcctgctatttattggaagttcaagaaacttaaagttaaagctgctcaatcttgtatgccttgtaaatgtgactgttctcctcctctttctttgcttgaagttgctcctggcttggcgaatcttacaatcacagactgcggaaaagatgatccggaccttaaggaggagatggagaaacagttcgttgatttattatcggaagagctgaaactgcaggaggctgttgacaaggagcacgcccatcatatgaacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="121454" stop="126800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121754" g_stop="122104" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122105" i_stop="125439" i_length="3335">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125440" g_stop="125463" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="375" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125464" i_stop="126378" i_length="915">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126379" g_stop="126500" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="497" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E306733" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121754" e_stop="122104"/>
          <exon e_start="125440" e_stop="125463"/>
          <exon e_start="126379" e_stop="126500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGAAAGTAGATGGAAAGTAGCAGTACTAGTTAATTAATCAGCACTTATTTTCAGCTGAACATCTTTAACAATTTGAAAAATCCCAATTAACCCCATAACAGTAGATCCATTTTGCCTTGTAGATCTCACTCCCAATTTGCTCTCAAAGCAAAAAGGAAACATGGCAAGGCAATCTGGGAATTGCTTAAGATGTTGTTTAGTAATTTTTGCTGTAGTTTCTGCTCTTTGTGTATCTGGTCCTGCTATTTATTGGAAGTTCAAGAAACTTAAAGTTAAAGCTGCTCAATCTTGTATGCCTTGTAAATGTGACTGTTCTCCTCCTCTTTCTTTGCTTGAAGTTGCTCCTGGTATGTCATTTTTAGATCCAAGTTTATGCTTTATATTAAATAAAGATCATGTTTTTATAGTTTTTTTTTTGTTTGGGGTTTCTTTATTTGATTAAATAAAGAAATGGTGTTGATTTCATGCTCTGCTTGTCAAAAAGATCATGTTTTTAAGGTTTGTTGTTTGGTTTCCTTTTATGGGGTTCCTTTATTTGATTCGTTCTTTTGAATGGTGTTAGCTTTATTGTAAGTTTTGAGGTTCAAGTTTGGGGATCTTCTTGTCTTTGGTGAATTGGGGTTTTGAGCTGCTAAGATGGAATTAGAATTTCGAGTTTATGAGTTTTAGATTCTAGATGAGGTATAATGTAACCCCACCAGTGGGGTCTGGGGAGATTTTTGAGCGTATGCAGACCTTATCTCTACCGGAGGACGGAGGTAGAGAGACTGTTTTCGATAGACCTTAGGCTCAAGAAAAAAGAATTAACAGGAGTAAGTAAGTCATGTCAAAATACTATAAGAGATTCTAGAAATATAGCGGATCCAGATAAATTACTTGTACGTATTTTAGTGGATTTGTAAGCATAAAATAGTGGATTTGAACCAAAACTATCAAGAAACTTCACAGCAGCGCCTCCCCTGCTGAGCTGTCGTATGGACATCAATACTTGCTTATTTGGTTTTTTCTCATGTTGACCATTGGATTATGTGTTTATAATGTTAGATTGGCTGTAGATTTTCTGTTGTATGTGAAGAGTTTATTAAGTAACCTCTTAATTATCATGTTGATTGTTATCTTTTGCTTCAAACAAACTGCTGAAGTGCTCTTTGATTGCAAGTTTCGACCTATTTTTATGATCTACTTAACAAATTCTATCTTTTCTTTTATAGGTTTGTAACTTGGTTTTCATTTTTGGTTTTCTTTATTTGATTCATTCTTTTGGACGGTGTTATTTTTATTGCAAGTTTTGAGGGTTGTGTATCTTGTCTTTTGTGATTTGGGTTCCGGAGTTGTCATATGGACGTCAGTGCTTGTTTTCGGTATTTTCTCGGGTTGAGGTTGGACTGTGGGTTATAGAATTTTGGATTGACTGTAGATTTTCAATTGCATGTGAAGAGTTTATTAAGTGACCTCTTAATTGTCTTGTTCACTGTTATCTTCTGCTGCAAAAAAAAAAACCCTGCTCTTTGATTGCCAAGTTTCAGCCAATTGGTTCTTGCAAAGATAAGATCTCGGTGTAATGCTGATTGTAGCAATGTTATCGGATTTGATTTGCCTAAAGACCCTTCTGGTCCATCTCTTTTGCAGCATTGATTGTCTTCGAAAACATGACTTGCCTAGGTGGAAGTAAGTAAATAAAAAAGATTAGGAAGTGAATAGATATTTAATCCTGTCTGCAATATGGGATTTGGTCACTCTAATGATCTGAGGCTGATCAAATAACGAACTTGCTCCCCTCGTACCTTATCAAAAACTTGCTCCCCTTGCTTAAAGTGGGGATGAAGGTCTTACCTAAAAAAAATCAGACATTATTTTGATAAAATAAATTAGTAATCTTATGATTATTGCTTGAACTTAGTAAAGATTGAGGTCGGATAGGATGTAGTAGAAGCTCCAGAGAACTTTGATTGACACGCTCATGAAGGAAAATAGGAGAGTTGTGTCTACGTACTTTTGCACAAAAGCTCTCTGCTACATTTTTTCTTCCTGGTTTGGAAGCATGTTAATCAAGTCTCACCTTAAGTTTCTACCTTGTTGTCCCCATAATTAAGCAAACAATGAAAGATGAGCTTAGTAAAGATGTGATTTTTTGCTTATGTGGTAACAACGTACTAAAGGTTCGTGACAGGATGTATTCTGCTTTTGTGTTTGGGTTAAATCCACCGAACCAGAACAGATTAACAAATGCTTTCATTAAGTATCTTGTTCTTTATCCTCAAAAAAATTTAATTATCTTGTTCCTCATGCACCTTATCAGAAACTTGTTGCCTAGCAAAAAGTGGGGATGAAGGTCTTGCTTCTAAAGAATAAAGACATCATTTATGTAAAATAAATGGCTAATCTTACGACTATTGCTAGATCTTATCAACGATTGAGGTTTAGTAGAAGCTTAATAGAAGCTTTGATTGATAGGCTCTGACAAAATAAGTGAGCTCTGCTAGAGACTGTCACAAAGCTCTATGTTAGACATTTTTCCTTCATGGTTTTGGAGTTTATCGATCAAGCCTCACATCAAGTTTCTACTTTCCTAGCCCTATAGTTAAGCTAACTATGAATAAATGAGAGAATTCTTTCTGTCCCGTTGAACTGACAGTTCCTTCTAATTTTAGTGAAAAATGATCTGTGTAGACGATACCTACTGCTAGTTTTGGGTTGAGGCATAGTTATACTATTATAGTGTTTCAAGAATCCACCCTTGCTGAAAACTAAGGGCTGAAGGATGTAGAACTTTAATTACATGCAATATTTATTGTTTATGTTCTTTTCCGATACCTCTAAAAGCATGACCTGAAGTTCCCATCCTACATTGTACTTTTTAAAAAGTACCATGCAGAGTCTCCGTGCTGGATCAACTTTTCGATTCTTCTTGAGAAGCGGAGGTAATTCTGAAGAAGTACCGAGCACTAAATCTCCTCATTTGTTCTTTTTTTACCAACAAATGATACTTACAAACTTTACGTATTACATGTAATGAGGACATAATTGTTAGTAAACTGACATTAGGAATGGAATCCTTTCCTTTTCGCTTGGGATACTTACATACCCACTTATCTGTTTGGTGTTGCAATGTTCTTTTGTGTCCTATGTGAGTCTGGAGATCCTAAAATGACATTTAAGTAGAGAACACATTATATGATTGTTGGAGACTTCTTCATTGCGTTTGTCCTTTCGTATTCTTGTATAGTGCAAGTGCCGTCTTTATGCTTTTTTATACTTGGGCATATATCACGCTCCGAAGCTTATGATCATAATGACCTTATACTTTGTTGAAAAGGTTATTGTTGCTAGAGTTTAAGTAATATGCACCGTCTATGTAAATAAGGTATCTTATTTTCAACATCTCAAATCTCACATTTTAAGGAGGCTTACGTGTAGATAACCTTTGAATGACCTGATGGTGTAAATAGTTATTTATGTTTACAGTTTATAAAACTTTAAACTCATATTTCTATAGCTGGTCGAGGTGTTAAACTGAACTCCGTCACATGTGACATGCCTTCTTTATTGCTAGTTTTGGATATCTTTGTCTTTTGATATTTCAATTCTTGGTGAAAATTCTATAAATAATCATGTATAAGGTGCAGTTGATGAAGTTTCAATGCCAATAACATTGTCTTATTTTTGGTTTCCGCTTGTGCAGGCTTGGCGAATCTTACAATCACAGGTGTGCTTTCTAATTAAATTCCTCTTCACTATTTACCCGTTCTTCTTCTCTTCCAAAAAGAATCGCAAGTGACCTTGGATGTTTTTCTTCCCTTAATACAATTATTTCTAAGATTATGCAATACTGAAAGGCCTTTTGATGAATACAAAAAAATACAGTCCTCGAGAATTGAGGCCAATTAGATGATAGTGACAAACATCCCTAAATTGAATTTCACTTTGACGATGGATACTTAAACCTCTGAATGATTGAACCTAATCGAATTTGAGTTTTCCTTTTAAGTAGGTTCTGACTTGGAGATTCGATCCGTTAGATCTTTGGACCAAGCTACTTCATTAAATAAGCACTGTCTGACTATTAGCCTTCTATAGATGTGTTGCCTAGATTCTCTTTTATGTAGCTTGTCGTCCTATAGTTTATTTTGGACCCTCAGACGCGGTTATGAGCAAGTATAAAGTGTTTTAGTGCTAAAACCAGAAAGTCTCCGGAGTGAAAAAGACGAAGGAAACAAGACGATAGAAGCTACATTGGTTTAAGTAACACGCTCACAGATGCTCTATGTAATTTACAATGAAAGAAGTATGTTCCGCACCACAAAAACAGTTCAGAGATATTTGTTGTGATTTTCTCTTACCGTGTGTCTTCCACTTCTCCATATTACAAACTCAAAAATGTATTCATACTGCTCTTGCATGTAATGCTACTAGGAGCTTTGTTATCTAGAATCTATGTTGCTCGGACTCTCCTAAAATGTTGCCCCGTTTCGGAATCTCTAAAAAGTACTACTTATGGAGGATCCAGCACACACCCGGCAGCGTATTTGAATAGTCCGAGCGGCATAGTCTAGAACACATGCAAAAGATTGTTTTAAGCTCAAATGACATGCTACATAGTAATGTTTCCTATTGGCAACAGACTGCGGAAAAGATGATCCGGACCTTAAGGAGGAGATGGAGAAACAGTTCGTTGATTTATTATCGGAAGAGCTGAAACTGCAGGAGGCTGTTGACAAGGAGCACGCCCATCATATGAACATC</genome_strand>
        <mrna_strand>TTCAAGAAAGTAGATGGAAAGTAGCAGTACTAGTTAATTAATCAGCACTTATTTTCAGCTGAACATCTTTAACAATTTGAAAAATCCCAATTAACCCCATAACAGTAGATCCATTTTGCCTTGTAGATCTCACTCCCAATTTGCTCTCAAAGCAAAAAGGAAACATGGCAAGGCAATCTGGGAATTGCTTAAGATGTTGTTTAGTAATTTTTGCTGTAGTTTCTGCTCTTTGTGTATCTGGTCCTGCTATTTATTGGAAGTTCAAGAAACTTAAAGTTAAAGCTGCTCAATCTTGTATGCCTTGTAAATGTGACTGTTCTCCTCCTCTTTCTTTGCTTGAAGTTGCTCCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGCGAATCTTACAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCGGAAAAGATGATCCGGACCTTAAGGAGGAGATGGAGAAACAGTTCGTTGATTTATTATCGGAAGAGCTGAAACTGCAGGAGGCTGTTGACAAGGAGCACGCCCATCATATGAACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E303126" ref_strand="+" ref_description="SGN-E303126 	[cLEX-5-O5]">
      <seq>agatctcactcccaatttgctctcaaagcaaaaaggaaacatggcaaggcaatctgggaattgcttaagatgttgcttagtaatttttgctgtagtttctgctctttgtgtatctggtcctgctctttattggaagttcaagaaacttaaagttaaagctgctcaatcttgtatgccttgtaaatgtgactgttctcctcctctttctttgcttgaagttgctcctggcttggcgaatcttacaatcacagactgcggaaaagatgatccggaccttaaggaggagatggagaaacagctcgttgatttattatcggaagagctgaaactgcaggaggctgttgacaaggagcacgcccatcatatgaacatcacctttgtggaggcgaggaggttagctaccgagtaccaaaaggaggctgagaaatgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="121578" stop="126859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121878" g_stop="122104" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122105" i_stop="125439" i_length="3335">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125440" g_stop="125463" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="251" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125464" i_stop="126378" i_length="915">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126379" g_stop="126559" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="432" r_length="181" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E303126" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121878" e_stop="122104"/>
          <exon e_start="125440" e_stop="125463"/>
          <exon e_start="126379" e_stop="126559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCTCACTCCCAATTTGCTCTCAAAGCAAAAAGGAAACATGGCAAGGCAATCTGGGAATTGCTTAAGATGTTGTTTAGTAATTTTTGCTGTAGTTTCTGCTCTTTGTGTATCTGGTCCTGCTATTTATTGGAAGTTCAAGAAACTTAAAGTTAAAGCTGCTCAATCTTGTATGCCTTGTAAATGTGACTGTTCTCCTCCTCTTTCTTTGCTTGAAGTTGCTCCTGGTATGTCATTTTTAGATCCAAGTTTATGCTTTATATTAAATAAAGATCATGTTTTTATAGTTTTTTTTTTGTTTGGGGTTTCTTTATTTGATTAAATAAAGAAATGGTGTTGATTTCATGCTCTGCTTGTCAAAAAGATCATGTTTTTAAGGTTTGTTGTTTGGTTTCCTTTTATGGGGTTCCTTTATTTGATTCGTTCTTTTGAATGGTGTTAGCTTTATTGTAAGTTTTGAGGTTCAAGTTTGGGGATCTTCTTGTCTTTGGTGAATTGGGGTTTTGAGCTGCTAAGATGGAATTAGAATTTCGAGTTTATGAGTTTTAGATTCTAGATGAGGTATAATGTAACCCCACCAGTGGGGTCTGGGGAGATTTTTGAGCGTATGCAGACCTTATCTCTACCGGAGGACGGAGGTAGAGAGACTGTTTTCGATAGACCTTAGGCTCAAGAAAAAAGAATTAACAGGAGTAAGTAAGTCATGTCAAAATACTATAAGAGATTCTAGAAATATAGCGGATCCAGATAAATTACTTGTACGTATTTTAGTGGATTTGTAAGCATAAAATAGTGGATTTGAACCAAAACTATCAAGAAACTTCACAGCAGCGCCTCCCCTGCTGAGCTGTCGTATGGACATCAATACTTGCTTATTTGGTTTTTTCTCATGTTGACCATTGGATTATGTGTTTATAATGTTAGATTGGCTGTAGATTTTCTGTTGTATGTGAAGAGTTTATTAAGTAACCTCTTAATTATCATGTTGATTGTTATCTTTTGCTTCAAACAAACTGCTGAAGTGCTCTTTGATTGCAAGTTTCGACCTATTTTTATGATCTACTTAACAAATTCTATCTTTTCTTTTATAGGTTTGTAACTTGGTTTTCATTTTTGGTTTTCTTTATTTGATTCATTCTTTTGGACGGTGTTATTTTTATTGCAAGTTTTGAGGGTTGTGTATCTTGTCTTTTGTGATTTGGGTTCCGGAGTTGTCATATGGACGTCAGTGCTTGTTTTCGGTATTTTCTCGGGTTGAGGTTGGACTGTGGGTTATAGAATTTTGGATTGACTGTAGATTTTCAATTGCATGTGAAGAGTTTATTAAGTGACCTCTTAATTGTCTTGTTCACTGTTATCTTCTGCTGCAAAAAAAAAAACCCTGCTCTTTGATTGCCAAGTTTCAGCCAATTGGTTCTTGCAAAGATAAGATCTCGGTGTAATGCTGATTGTAGCAATGTTATCGGATTTGATTTGCCTAAAGACCCTTCTGGTCCATCTCTTTTGCAGCATTGATTGTCTTCGAAAACATGACTTGCCTAGGTGGAAGTAAGTAAATAAAAAAGATTAGGAAGTGAATAGATATTTAATCCTGTCTGCAATATGGGATTTGGTCACTCTAATGATCTGAGGCTGATCAAATAACGAACTTGCTCCCCTCGTACCTTATCAAAAACTTGCTCCCCTTGCTTAAAGTGGGGATGAAGGTCTTACCTAAAAAAAATCAGACATTATTTTGATAAAATAAATTAGTAATCTTATGATTATTGCTTGAACTTAGTAAAGATTGAGGTCGGATAGGATGTAGTAGAAGCTCCAGAGAACTTTGATTGACACGCTCATGAAGGAAAATAGGAGAGTTGTGTCTACGTACTTTTGCACAAAAGCTCTCTGCTACATTTTTTCTTCCTGGTTTGGAAGCATGTTAATCAAGTCTCACCTTAAGTTTCTACCTTGTTGTCCCCATAATTAAGCAAACAATGAAAGATGAGCTTAGTAAAGATGTGATTTTTTGCTTATGTGGTAACAACGTACTAAAGGTTCGTGACAGGATGTATTCTGCTTTTGTGTTTGGGTTAAATCCACCGAACCAGAACAGATTAACAAATGCTTTCATTAAGTATCTTGTTCTTTATCCTCAAAAAAATTTAATTATCTTGTTCCTCATGCACCTTATCAGAAACTTGTTGCCTAGCAAAAAGTGGGGATGAAGGTCTTGCTTCTAAAGAATAAAGACATCATTTATGTAAAATAAATGGCTAATCTTACGACTATTGCTAGATCTTATCAACGATTGAGGTTTAGTAGAAGCTTAATAGAAGCTTTGATTGATAGGCTCTGACAAAATAAGTGAGCTCTGCTAGAGACTGTCACAAAGCTCTATGTTAGACATTTTTCCTTCATGGTTTTGGAGTTTATCGATCAAGCCTCACATCAAGTTTCTACTTTCCTAGCCCTATAGTTAAGCTAACTATGAATAAATGAGAGAATTCTTTCTGTCCCGTTGAACTGACAGTTCCTTCTAATTTTAGTGAAAAATGATCTGTGTAGACGATACCTACTGCTAGTTTTGGGTTGAGGCATAGTTATACTATTATAGTGTTTCAAGAATCCACCCTTGCTGAAAACTAAGGGCTGAAGGATGTAGAACTTTAATTACATGCAATATTTATTGTTTATGTTCTTTTCCGATACCTCTAAAAGCATGACCTGAAGTTCCCATCCTACATTGTACTTTTTAAAAAGTACCATGCAGAGTCTCCGTGCTGGATCAACTTTTCGATTCTTCTTGAGAAGCGGAGGTAATTCTGAAGAAGTACCGAGCACTAAATCTCCTCATTTGTTCTTTTTTTACCAACAAATGATACTTACAAACTTTACGTATTACATGTAATGAGGACATAATTGTTAGTAAACTGACATTAGGAATGGAATCCTTTCCTTTTCGCTTGGGATACTTACATACCCACTTATCTGTTTGGTGTTGCAATGTTCTTTTGTGTCCTATGTGAGTCTGGAGATCCTAAAATGACATTTAAGTAGAGAACACATTATATGATTGTTGGAGACTTCTTCATTGCGTTTGTCCTTTCGTATTCTTGTATAGTGCAAGTGCCGTCTTTATGCTTTTTTATACTTGGGCATATATCACGCTCCGAAGCTTATGATCATAATGACCTTATACTTTGTTGAAAAGGTTATTGTTGCTAGAGTTTAAGTAATATGCACCGTCTATGTAAATAAGGTATCTTATTTTCAACATCTCAAATCTCACATTTTAAGGAGGCTTACGTGTAGATAACCTTTGAATGACCTGATGGTGTAAATAGTTATTTATGTTTACAGTTTATAAAACTTTAAACTCATATTTCTATAGCTGGTCGAGGTGTTAAACTGAACTCCGTCACATGTGACATGCCTTCTTTATTGCTAGTTTTGGATATCTTTGTCTTTTGATATTTCAATTCTTGGTGAAAATTCTATAAATAATCATGTATAAGGTGCAGTTGATGAAGTTTCAATGCCAATAACATTGTCTTATTTTTGGTTTCCGCTTGTGCAGGCTTGGCGAATCTTACAATCACAGGTGTGCTTTCTAATTAAATTCCTCTTCACTATTTACCCGTTCTTCTTCTCTTCCAAAAAGAATCGCAAGTGACCTTGGATGTTTTTCTTCCCTTAATACAATTATTTCTAAGATTATGCAATACTGAAAGGCCTTTTGATGAATACAAAAAAATACAGTCCTCGAGAATTGAGGCCAATTAGATGATAGTGACAAACATCCCTAAATTGAATTTCACTTTGACGATGGATACTTAAACCTCTGAATGATTGAACCTAATCGAATTTGAGTTTTCCTTTTAAGTAGGTTCTGACTTGGAGATTCGATCCGTTAGATCTTTGGACCAAGCTACTTCATTAAATAAGCACTGTCTGACTATTAGCCTTCTATAGATGTGTTGCCTAGATTCTCTTTTATGTAGCTTGTCGTCCTATAGTTTATTTTGGACCCTCAGACGCGGTTATGAGCAAGTATAAAGTGTTTTAGTGCTAAAACCAGAAAGTCTCCGGAGTGAAAAAGACGAAGGAAACAAGACGATAGAAGCTACATTGGTTTAAGTAACACGCTCACAGATGCTCTATGTAATTTACAATGAAAGAAGTATGTTCCGCACCACAAAAACAGTTCAGAGATATTTGTTGTGATTTTCTCTTACCGTGTGTCTTCCACTTCTCCATATTACAAACTCAAAAATGTATTCATACTGCTCTTGCATGTAATGCTACTAGGAGCTTTGTTATCTAGAATCTATGTTGCTCGGACTCTCCTAAAATGTTGCCCCGTTTCGGAATCTCTAAAAAGTACTACTTATGGAGGATCCAGCACACACCCGGCAGCGTATTTGAATAGTCCGAGCGGCATAGTCTAGAACACATGCAAAAGATTGTTTTAAGCTCAAATGACATGCTACATAGTAATGTTTCCTATTGGCAACAGACTGCGGAAAAGATGATCCGGACCTTAAGGAGGAGATGGAGAAACAGTTCGTTGATTTATTATCGGAAGAGCTGAAACTGCAGGAGGCTGTTGACAAGGAGCACGCCCATCATATGAACATCACCTTTGTGGAGGCGAGGAGGTTAGCTACCGAGTACCAAAAGGAGGCTGAGAAATGCAT</genome_strand>
        <mrna_strand>AGATCTCACTCCCAATTTGCTCTCAAAGCAAAAAGGAAACATGGCAAGGCAATCTGGGAATTGCTTAAGATGTTGCTTAGTAATTTTTGCTGTAGTTTCTGCTCTTTGTGTATCTGGTCCTGCTCTTTATTGGAAGTTCAAGAAACTTAAAGTTAAAGCTGCTCAATCTTGTATGCCTTGTAAATGTGACTGTTCTCCTCCTCTTTCTTTGCTTGAAGTTGCTCCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGCGAATCTTACAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCGGAAAAGATGATCCGGACCTTAAGGAGGAGATGGAGAAACAGCTCGTTGATTTATTATCGGAAGAGCTGAAACTGCAGGAGGCTGTTGACAAGGAGCACGCCCATCATATGAACATCACCTTTGTGGAGGCGAGGAGGTTAGCTACCGAGTACCAAAAGGAGGCTGAGAAATGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E303595" ref_strand="+" ref_description="SGN-E303595 	[cLEY-6-G5]">
      <seq>tcactcccaatttgctctcaaagcaaaaaggaaacatggcaaggcaatctgggaattgcttaagatgttgtttagtaatttttgctgtagtttctgctctttgtgtatctggtcctgctatttattggaagttcaagaaacttaaagttaaagctgctcaatcttgtatgccttgtaaatgtgactgttctcctcctctttctttgcttgaagttgctcctggcttggcgaatcttacaatcacagactgcggaaaagatgatccggaccttaaagaggagatggagaaacagctcgttgatttattatcggaagagctgaaactgcatgaggctgttgacaaggagcacgcccatcatatgaacatcacctttgtggatgcgaggaggttagctaccgagtaccaaaaggaggctgagaaatgcattgctacaacggaaacttgtgaagtcgggagagaaagagctgttgtgttgtatgccaaggaaatgaagttgactaacctttgggaacgcagagcgcgccaagctggttggaaagactgaatgcaaaaatgaagttttcatcacactagctcaaattttgttgtccgctatgtagctttatgctagntatatttctctgtatgagcacaaaattgctcatatttcttcatctaatatatgtattttacctgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="121583" stop="127108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121883" g_stop="122104" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122105" i_stop="125439" i_length="3335">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125440" g_stop="125463" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="246" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125464" i_stop="126378" i_length="915">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126379" g_stop="126807" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="675" r_length="429" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="677" polyA_stop="687"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E303595" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121883" e_stop="122104"/>
          <exon e_start="125440" e_stop="125463"/>
          <exon e_start="126379" e_stop="126807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCCCAATTTGCTCTCAAAGCAAAAAGGAAACATGGCAAGGCAATCTGGGAATTGCTTAAGATGTTGTTTAGTAATTTTTGCTGTAGTTTCTGCTCTTTGTGTATCTGGTCCTGCTATTTATTGGAAGTTCAAGAAACTTAAAGTTAAAGCTGCTCAATCTTGTATGCCTTGTAAATGTGACTGTTCTCCTCCTCTTTCTTTGCTTGAAGTTGCTCCTGGTATGTCATTTTTAGATCCAAGTTTATGCTTTATATTAAATAAAGATCATGTTTTTATAGTTTTTTTTTTGTTTGGGGTTTCTTTATTTGATTAAATAAAGAAATGGTGTTGATTTCATGCTCTGCTTGTCAAAAAGATCATGTTTTTAAGGTTTGTTGTTTGGTTTCCTTTTATGGGGTTCCTTTATTTGATTCGTTCTTTTGAATGGTGTTAGCTTTATTGTAAGTTTTGAGGTTCAAGTTTGGGGATCTTCTTGTCTTTGGTGAATTGGGGTTTTGAGCTGCTAAGATGGAATTAGAATTTCGAGTTTATGAGTTTTAGATTCTAGATGAGGTATAATGTAACCCCACCAGTGGGGTCTGGGGAGATTTTTGAGCGTATGCAGACCTTATCTCTACCGGAGGACGGAGGTAGAGAGACTGTTTTCGATAGACCTTAGGCTCAAGAAAAAAGAATTAACAGGAGTAAGTAAGTCATGTCAAAATACTATAAGAGATTCTAGAAATATAGCGGATCCAGATAAATTACTTGTACGTATTTTAGTGGATTTGTAAGCATAAAATAGTGGATTTGAACCAAAACTATCAAGAAACTTCACAGCAGCGCCTCCCCTGCTGAGCTGTCGTATGGACATCAATACTTGCTTATTTGGTTTTTTCTCATGTTGACCATTGGATTATGTGTTTATAATGTTAGATTGGCTGTAGATTTTCTGTTGTATGTGAAGAGTTTATTAAGTAACCTCTTAATTATCATGTTGATTGTTATCTTTTGCTTCAAACAAACTGCTGAAGTGCTCTTTGATTGCAAGTTTCGACCTATTTTTATGATCTACTTAACAAATTCTATCTTTTCTTTTATAGGTTTGTAACTTGGTTTTCATTTTTGGTTTTCTTTATTTGATTCATTCTTTTGGACGGTGTTATTTTTATTGCAAGTTTTGAGGGTTGTGTATCTTGTCTTTTGTGATTTGGGTTCCGGAGTTGTCATATGGACGTCAGTGCTTGTTTTCGGTATTTTCTCGGGTTGAGGTTGGACTGTGGGTTATAGAATTTTGGATTGACTGTAGATTTTCAATTGCATGTGAAGAGTTTATTAAGTGACCTCTTAATTGTCTTGTTCACTGTTATCTTCTGCTGCAAAAAAAAAAACCCTGCTCTTTGATTGCCAAGTTTCAGCCAATTGGTTCTTGCAAAGATAAGATCTCGGTGTAATGCTGATTGTAGCAATGTTATCGGATTTGATTTGCCTAAAGACCCTTCTGGTCCATCTCTTTTGCAGCATTGATTGTCTTCGAAAACATGACTTGCCTAGGTGGAAGTAAGTAAATAAAAAAGATTAGGAAGTGAATAGATATTTAATCCTGTCTGCAATATGGGATTTGGTCACTCTAATGATCTGAGGCTGATCAAATAACGAACTTGCTCCCCTCGTACCTTATCAAAAACTTGCTCCCCTTGCTTAAAGTGGGGATGAAGGTCTTACCTAAAAAAAATCAGACATTATTTTGATAAAATAAATTAGTAATCTTATGATTATTGCTTGAACTTAGTAAAGATTGAGGTCGGATAGGATGTAGTAGAAGCTCCAGAGAACTTTGATTGACACGCTCATGAAGGAAAATAGGAGAGTTGTGTCTACGTACTTTTGCACAAAAGCTCTCTGCTACATTTTTTCTTCCTGGTTTGGAAGCATGTTAATCAAGTCTCACCTTAAGTTTCTACCTTGTTGTCCCCATAATTAAGCAAACAATGAAAGATGAGCTTAGTAAAGATGTGATTTTTTGCTTATGTGGTAACAACGTACTAAAGGTTCGTGACAGGATGTATTCTGCTTTTGTGTTTGGGTTAAATCCACCGAACCAGAACAGATTAACAAATGCTTTCATTAAGTATCTTGTTCTTTATCCTCAAAAAAATTTAATTATCTTGTTCCTCATGCACCTTATCAGAAACTTGTTGCCTAGCAAAAAGTGGGGATGAAGGTCTTGCTTCTAAAGAATAAAGACATCATTTATGTAAAATAAATGGCTAATCTTACGACTATTGCTAGATCTTATCAACGATTGAGGTTTAGTAGAAGCTTAATAGAAGCTTTGATTGATAGGCTCTGACAAAATAAGTGAGCTCTGCTAGAGACTGTCACAAAGCTCTATGTTAGACATTTTTCCTTCATGGTTTTGGAGTTTATCGATCAAGCCTCACATCAAGTTTCTACTTTCCTAGCCCTATAGTTAAGCTAACTATGAATAAATGAGAGAATTCTTTCTGTCCCGTTGAACTGACAGTTCCTTCTAATTTTAGTGAAAAATGATCTGTGTAGACGATACCTACTGCTAGTTTTGGGTTGAGGCATAGTTATACTATTATAGTGTTTCAAGAATCCACCCTTGCTGAAAACTAAGGGCTGAAGGATGTAGAACTTTAATTACATGCAATATTTATTGTTTATGTTCTTTTCCGATACCTCTAAAAGCATGACCTGAAGTTCCCATCCTACATTGTACTTTTTAAAAAGTACCATGCAGAGTCTCCGTGCTGGATCAACTTTTCGATTCTTCTTGAGAAGCGGAGGTAATTCTGAAGAAGTACCGAGCACTAAATCTCCTCATTTGTTCTTTTTTTACCAACAAATGATACTTACAAACTTTACGTATTACATGTAATGAGGACATAATTGTTAGTAAACTGACATTAGGAATGGAATCCTTTCCTTTTCGCTTGGGATACTTACATACCCACTTATCTGTTTGGTGTTGCAATGTTCTTTTGTGTCCTATGTGAGTCTGGAGATCCTAAAATGACATTTAAGTAGAGAACACATTATATGATTGTTGGAGACTTCTTCATTGCGTTTGTCCTTTCGTATTCTTGTATAGTGCAAGTGCCGTCTTTATGCTTTTTTATACTTGGGCATATATCACGCTCCGAAGCTTATGATCATAATGACCTTATACTTTGTTGAAAAGGTTATTGTTGCTAGAGTTTAAGTAATATGCACCGTCTATGTAAATAAGGTATCTTATTTTCAACATCTCAAATCTCACATTTTAAGGAGGCTTACGTGTAGATAACCTTTGAATGACCTGATGGTGTAAATAGTTATTTATGTTTACAGTTTATAAAACTTTAAACTCATATTTCTATAGCTGGTCGAGGTGTTAAACTGAACTCCGTCACATGTGACATGCCTTCTTTATTGCTAGTTTTGGATATCTTTGTCTTTTGATATTTCAATTCTTGGTGAAAATTCTATAAATAATCATGTATAAGGTGCAGTTGATGAAGTTTCAATGCCAATAACATTGTCTTATTTTTGGTTTCCGCTTGTGCAGGCTTGGCGAATCTTACAATCACAGGTGTGCTTTCTAATTAAATTCCTCTTCACTATTTACCCGTTCTTCTTCTCTTCCAAAAAGAATCGCAAGTGACCTTGGATGTTTTTCTTCCCTTAATACAATTATTTCTAAGATTATGCAATACTGAAAGGCCTTTTGATGAATACAAAAAAATACAGTCCTCGAGAATTGAGGCCAATTAGATGATAGTGACAAACATCCCTAAATTGAATTTCACTTTGACGATGGATACTTAAACCTCTGAATGATTGAACCTAATCGAATTTGAGTTTTCCTTTTAAGTAGGTTCTGACTTGGAGATTCGATCCGTTAGATCTTTGGACCAAGCTACTTCATTAAATAAGCACTGTCTGACTATTAGCCTTCTATAGATGTGTTGCCTAGATTCTCTTTTATGTAGCTTGTCGTCCTATAGTTTATTTTGGACCCTCAGACGCGGTTATGAGCAAGTATAAAGTGTTTTAGTGCTAAAACCAGAAAGTCTCCGGAGTGAAAAAGACGAAGGAAACAAGACGATAGAAGCTACATTGGTTTAAGTAACACGCTCACAGATGCTCTATGTAATTTACAATGAAAGAAGTATGTTCCGCACCACAAAAACAGTTCAGAGATATTTGTTGTGATTTTCTCTTACCGTGTGTCTTCCACTTCTCCATATTACAAACTCAAAAATGTATTCATACTGCTCTTGCATGTAATGCTACTAGGAGCTTTGTTATCTAGAATCTATGTTGCTCGGACTCTCCTAAAATGTTGCCCCGTTTCGGAATCTCTAAAAAGTACTACTTATGGAGGATCCAGCACACACCCGGCAGCGTATTTGAATAGTCCGAGCGGCATAGTCTAGAACACATGCAAAAGATTGTTTTAAGCTCAAATGACATGCTACATAGTAATGTTTCCTATTGGCAACAGACTGCGGAAAAGATGATCCGGACCTTAAGGAGGAGATGGAGAAACAGTTCGTTGATTTATTATCGGAAGAGCTGAAACTGCAGGAGGCTGTTGACAAGGAGCACGCCCATCATATGAACATCACCTTTGTGGAGGCGAGGAGGTTAGCTACCGAGTACCAAAAGGAGGCTGAGAAATGCATTGCTACAACGGAAACTTGTGAAGTCGGGAGAGAAAGAGCTGTTGTGTTGTATGCCAAGGAAATGAAGTTGACTAACCTTTGGGAACGCAGAGCGCGCCAAGCTGGTTGGAAAGACTGAATGCAAAAATGAAGTTTTCATCACACTAGCTCAAATTTTGTTGTCCGCTATGTAGCTTTATGCTAGTTATATTTCTCTGTATGAGCACAAAATTGCTCATATTTCTTCATCTAATATATGTATTTTACCT</genome_strand>
        <mrna_strand>TCACTCCCAATTTGCTCTCAAAGCAAAAAGGAAACATGGCAAGGCAATCTGGGAATTGCTTAAGATGTTGTTTAGTAATTTTTGCTGTAGTTTCTGCTCTTTGTGTATCTGGTCCTGCTATTTATTGGAAGTTCAAGAAACTTAAAGTTAAAGCTGCTCAATCTTGTATGCCTTGTAAATGTGACTGTTCTCCTCCTCTTTCTTTGCTTGAAGTTGCTCCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGCGAATCTTACAATCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCGGAAAAGATGATCCGGACCTTAAAGAGGAGATGGAGAAACAGCTCGTTGATTTATTATCGGAAGAGCTGAAACTGCATGAGGCTGTTGACAAGGAGCACGCCCATCATATGAACATCACCTTTGTGGATGCGAGGAGGTTAGCTACCGAGTACCAAAAGGAGGCTGAGAAATGCATTGCTACAACGGAAACTTGTGAAGTCGGGAGAGAAAGAGCTGTTGTGTTGTATGCCAAGGAAATGAAGTTGACTAACCTTTGGGAACGCAGAGCGCGCCAAGCTGGTTGGAAAGACTGAATGCAAAAATGAAGTTTTCATCACACTAGCTCAAATTTTGTTGTCCGCTATGTAGCTTTATGCTAGNTATATTTCTCTGTATGAGCACAAAATTGCTCATATTTCTTCATCTAATATATGTATTTTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E324764" ref_strand="+" ref_description="SGN-E324764 	[cTOC-8-G11]">
      <seq>tttcgagtttatgagttttagattctagatgaggtataatgtaaccccaccagtggggtctggggagatttttgagcgtatgcagaccttatctctaccggaggacggaggtagagagactgttttcgatagaccttaggctcaagaaaaaagaattaacaggagtaagtaagtcatgtcaaaatactataagagattctagaaatatagcggatccagataaattacttgtacgtattttagtggatttgtaagcataaaatagtggatttgaaccaaaactatcaagaaacttcacagcagcgcctcccctgctgagctgtcgtatggacatcaatacttgcttatttggttttttctcatgttgaccattggattatgtgtttataatgttagattggctgtagattttctgttgtatgtgaagagtttattaagtaacctcttaattatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="122106" stop="123162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122406" g_stop="122862" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E324764" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122406" e_stop="122862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGAGTTTATGAGTTTTAGATTCTAGATGAGGTATAATGTAACCCCACCAGTGGGGTCTGGGGAGATTTTTGAGCGTATGCAGACCTTATCTCTACCGGAGGACGGAGGTAGAGAGACTGTTTTCGATAGACCTTAGGCTCAAGAAAAAAGAATTAACAGGAGTAAGTAAGTCATGTCAAAATACTATAAGAGATTCTAGAAATATAGCGGATCCAGATAAATTACTTGTACGTATTTTAGTGGATTTGTAAGCATAAAATAGTGGATTTGAACCAAAACTATCAAGAAACTTCACAGCAGCGCCTCCCCTGCTGAGCTGTCGTATGGACATCAATACTTGCTTATTTGGTTTTTTCTCATGTTGACCATTGGATTATGTGTTTATAATGTTAGATTGGCTGTAGATTTTCTGTTGTATGTGAAGAGTTTATTAAGTAACCTCTTAATTATCATG</genome_strand>
        <mrna_strand>TTTCGAGTTTATGAGTTTTAGATTCTAGATGAGGTATAATGTAACCCCACCAGTGGGGTCTGGGGAGATTTTTGAGCGTATGCAGACCTTATCTCTACCGGAGGACGGAGGTAGAGAGACTGTTTTCGATAGACCTTAGGCTCAAGAAAAAAGAATTAACAGGAGTAAGTAAGTCATGTCAAAATACTATAAGAGATTCTAGAAATATAGCGGATCCAGATAAATTACTTGTACGTATTTTAGTGGATTTGTAAGCATAAAATAGTGGATTTGAACCAAAACTATCAAGAAACTTCACAGCAGCGCCTCCCCTGCTGAGCTGTCGTATGGACATCAATACTTGCTTATTTGGTTTTTTCTCATGTTGACCATTGGATTATGTGTTTATAATGTTAGATTGGCTGTAGATTTTCTGTTGTATGTGAAGAGTTTATTAAGTAACCTCTTAATTATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E303596" ref_strand="+" ref_description="SGN-E303596 	[cLEY-6-G5]">
      <seq>tttttttttcaggtaaaatacatatattagatgaagaaatatgagcaattttgtgctcatacagagaaatataactagcataaagctacatagcggacaacaaaatttgagctagtgtgatgaaaacttcatttttgcattcagtctttccaaccagcttggcgcgctctgcgttcccaaaggttagtcaacttcatttccttggcatacaacacaacagctctttctctcccgacttcacaagtttccgttgtagcaatgcatttctcagcctccttttggtactcggtagctaacctcctcgcctccacaaaggtgatgttcatatgatgggcgtgctccttgtcaacagcctcctgcagtttcagctcttccgataataaatcaacgaactgtttctccatctcctccttaaggtccggatcatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="-" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="127108" stop="126087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126805" g_stop="126387" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="431" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="-" ref_id="SGN-E303596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126805" e_stop="126387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAATACATATATTAGATGAAGAAATATGAGCAATTTTGTGCTCATACAGAGAAATATAACTAGCATAAAGCTACATAGCGGACAACAAAATTTGAGCTAGTGTGATGAAAACTTCATTTTTGCATTCAGTCTTTCCAACCAGCTTGGCGCGCTCTGCGTTCCCAAAGGTTAGTCAACTTCATTTCCTTGGCATACAACACAACAGCTCTTTCTCTCCCGACTTCACAAGTTTCCGTTGTAGCAATGCATTTCTCAGCCTCCTTTTGGTACTCGGTAGCTAACCTCCTCGCCTCCACAAAGGTGATGTTCATATGATGGGCGTGCTCCTTGTCAACAGCCTCCTGCAGTTTCAGCTCTTCCGATAATAAATCAACGAACTGTTTCTCCATCTCCTCCTTAAGGTCCGGATCATCTTT</genome_strand>
        <mrna_strand>GTAAAATACATATATTAGATGAAGAAATATGAGCAATTTTGTGCTCATACAGAGAAATATAACTAGCATAAAGCTACATAGCGGACAACAAAATTTGAGCTAGTGTGATGAAAACTTCATTTTTGCATTCAGTCTTTCCAACCAGCTTGGCGCGCTCTGCGTTCCCAAAGGTTAGTCAACTTCATTTCCTTGGCATACAACACAACAGCTCTTTCTCTCCCGACTTCACAAGTTTCCGTTGTAGCAATGCATTTCTCAGCCTCCTTTTGGTACTCGGTAGCTAACCTCCTCGCCTCCACAAAGGTGATGTTCATATGATGGGCGTGCTCCTTGTCAACAGCCTCCTGCAGTTTCAGCTCTTCCGATAATAAATCAACGAACTGTTTCTCCATCTCCTCCTTAAGGTCCGGATCATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-3VZPOW/sgn_ests_tomato" ref_id="SGN-E299660" ref_strand="-" ref_description="SGN-E299660 	[cLEW-1-I19]">
      <seq>ccatcatatgaacatcacctttgtggaggcgaggaggttagctaccgagtaccaaaaggaggctgagaaatgcattgctacaacggaaacttgtgaagtcgggaaagaaagagctgttgtgttgtatgccaaggaaatgaagttgactaacctttgggaacgcagagcgcgccaagctggttggaaagactgaatgcaaaaatgaagttttcatcacactagctcaaattttgttgtccgctatgtagctttatgctagttatatttctctgtatgagcacaaaattgctcatatttcttcatctaatatatgtattttacctgctctcctgtgtaccttgccattatcaaatgaaatataaacttccccactatagtttctatgaaaaaaaaaaaaaaaaaaaaaaaaaactcgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-NMdZu/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0002D20.1" temp_strand="+" temp_description="C07HBa0002D20.1  AC212605.1 htgs_phase:1 submitted_to_sgn_as:gi|158262101|gb|AC212605.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0002D20, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="126185" stop="127170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126485" g_stop="126869" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="386" polyA_stop="412"/>
      <MATCH_line gen_id="C07HBa0002D20.1" gen_strand="+" ref_id="SGN-E299660" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0002D20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299660" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="126485" e_stop="126869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCATATGAACATCACCTTTGTGGAGGCGAGGAGGTTAGCTACCGAGTACCAAAAGGAGGCTGAGAAATGCATTGCTACAACGGAAACTTGTGAAGTCGGGAGAGAAAGAGCTGTTGTGTTGTATGCCAAGGAAATGAAGTTGACTAACCTTTGGGAACGCAGAGCGCGCCAAGCTGGTTGGAAAGACTGAATGCAAAAATGAAGTTTTCATCACACTAGCTCAAATTTTGTTGTCCGCTATGTAGCTTTATGCTAGTTATATTTCTCTGTATGAGCACAAAATTGCTCATATTTCTTCATCTAATATATGTATTTTACCTGCTCTCCTGTGTACCTTGCCATTATCATATGAAATATAAACTTCCCCACTATAGTTTCTATG</genome_strand>
        <mrna_strand>CCATCATATGAACATCACCTTTGTGGAGGCGAGGAGGTTAGCTACCGAGTACCAAAAGGAGGCTGAGAAATGCATTGCTACAACGGAAACTTGTGAAGTCGGGAAAGAAAGAGCTGTTGTGTTGTATGCCAAGGAAATGAAGTTGACTAACCTTTGGGAACGCAGAGCGCGCCAAGCTGGTTGGAAAGACTGAATGCAAAAATGAAGTTTTCATCACACTAGCTCAAATTTTGTTGTCCGCTATGTAGCTTTATGCTAGTTATATTTCTCTGTATGAGCACAAAATTGCTCATATTTCTTCATCTAATATATGTATTTTACCTGCTCTCCTGTGTACCTTGCCATTATCAAATGAAATATAAACTTCCCCACTATAGTTTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>143</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1481" PGL_stop="1242"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1481" e_stop="1242"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="1481" e_stop="1242" e_length="240"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1481" stop="1242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCCACCATTTTCTCTTCTTATCCTTTTTTTTTTTTAATTATTGTGAAAAAAAATCTAAAATTTGGTGTAAAAATGGCTGGAAATGGAGTATTTGCAGAAATAATTGATGGAGAAGTGTACAAATATTATTGTGAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA</gDNA_template>
            <first_frame> N  P  P  F  S  L  L  I  L  F  F  F  *  L  L  *  K  K  I  *  N  L  V  *  K  W  L  E  M  E  Y  L  Q  K  *  L  M  E  K  C  T  N  I  I  V  K  V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L </first_frame>
            <second_frame>  I  H  H  F  L  F  L  S  F  F  F  F  N  Y  C  E  K  K  S  K  I  W  C  K  N  G  W  K  W  S  I  C  R  N  N  *  W  R  S  V  Q  I  L  L  *  R  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   S  T  I  F  S  S  Y  P  F  F  F  L  I  I  V  K  K  N  L  K  F  G  V  K  M  A  G  N  G  V  F  A  E  I  I  D  G  E  V  Y  K  Y  Y  C  E  G  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1479" stop="1243"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STIFSSYPFFFLIIVKKNLKFGVKMAGNGVFAEIIDGEVYKYYCEGFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="22829" PGL_stop="16342"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21432" e_stop="21380"/>
            <exon e_start="21298" e_stop="21122"/>
            <exon e_start="20494" e_stop="20301"/>
            <exon e_start="19891" e_stop="19763"/>
            <exon e_start="18892" e_stop="18773"/>
            <exon e_start="18443" e_stop="18307"/>
            <exon e_start="17972" e_stop="17817"/>
            <exon e_start="17505" e_stop="17127"/>
            <exon e_start="16817" e_stop="16701"/>
            <exon e_start="16603" e_stop="16342"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.547"/>
          <exon-intron don_prob="0.996" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="0.990"/>
          <exon-intron don_prob="0.999" acc_prob="0.843" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.830" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.547">
            <gDNA_exon_boundary e_start="21432" e_stop="21380" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21379" i_stop="21299" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21298" e_stop="21122" e_length="177"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.966">
            <gDNA_intron_boundary i_start="21121" i_stop="20495" i_length="627"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="20494" e_stop="20301" e_length="194"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20300" i_stop="19892" i_length="409"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19891" e_stop="19763" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.843">
            <gDNA_intron_boundary i_start="19762" i_stop="18893" i_length="870"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18892" e_stop="18773" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.830">
            <gDNA_intron_boundary i_start="18772" i_stop="18444" i_length="329"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18443" e_stop="18307" e_length="137"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="18306" i_stop="17973" i_length="334"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="17972" e_stop="17817" e_length="156"/>
          </exon>
          <intron i_serial="7" don_prob="0.848" acc_prob="0.978">
            <gDNA_intron_boundary i_start="17816" i_stop="17506" i_length="311"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="17505" e_stop="17127" e_length="379"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.935">
            <gDNA_intron_boundary i_start="17126" i_stop="16818" i_length="309"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="16817" e_stop="16701" e_length="117"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16700" i_stop="16604" i_length="97"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="16603" e_stop="16342" e_length="262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21432" stop="21380"/>
              <exon start="21298" stop="21122"/>
              <exon start="20494" stop="20301"/>
              <exon start="19891" stop="19855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21298" stop="21122"/>
              <exon start="20494" stop="20301"/>
              <exon start="19891" stop="19763"/>
              <exon start="18892" stop="18773"/>
              <exon start="18443" stop="18390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21298" stop="21122"/>
              <exon start="20494" stop="20301"/>
              <exon start="19891" stop="19763"/>
              <exon start="18892" stop="18773"/>
              <exon start="18443" stop="18392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21298" stop="21122"/>
              <exon start="20494" stop="20301"/>
              <exon start="19891" stop="19763"/>
              <exon start="18892" stop="18773"/>
              <exon start="18443" stop="18411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21298" stop="21122"/>
              <exon start="20494" stop="20301"/>
              <exon start="19891" stop="19763"/>
              <exon start="18892" stop="18800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21298" stop="21122"/>
              <exon start="20494" stop="20301"/>
              <exon start="19891" stop="19763"/>
              <exon start="18892" stop="18866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21298" stop="21122"/>
              <exon start="20494" stop="20301"/>
              <exon start="19891" stop="19792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21298" stop="21122"/>
              <exon start="20494" stop="20346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20382" stop="20301"/>
              <exon start="19891" stop="19763"/>
              <exon start="18892" stop="18858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19887" stop="19763"/>
              <exon start="18892" stop="18773"/>
              <exon start="18443" stop="18307"/>
              <exon start="17972" stop="17959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19857" stop="19763"/>
              <exon start="18892" stop="18773"/>
              <exon start="18443" stop="18307"/>
              <exon start="17972" stop="17817"/>
              <exon start="17505" stop="17291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19826" stop="19763"/>
              <exon start="18892" stop="18773"/>
              <exon start="18443" stop="18307"/>
              <exon start="17972" stop="17852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18804" stop="18773"/>
              <exon start="18443" stop="18307"/>
              <exon start="17972" stop="17817"/>
              <exon start="17505" stop="17127"/>
              <exon start="16817" stop="16751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18443" stop="18307"/>
              <exon start="17972" stop="17817"/>
              <exon start="17505" stop="17130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18443" stop="18307"/>
              <exon start="17972" stop="17892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17972" stop="17817"/>
              <exon start="17505" stop="17127"/>
              <exon start="16817" stop="16708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17956" stop="17817"/>
              <exon start="17505" stop="17127"/>
              <exon start="16817" stop="16740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17479" stop="17127"/>
              <exon start="16817" stop="16701"/>
              <exon start="16603" stop="16524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17280" stop="17127"/>
              <exon start="16817" stop="16701"/>
              <exon start="16603" stop="16342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340107" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17279" stop="17127"/>
              <exon start="16817" stop="16701"/>
              <exon start="16603" stop="16351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17279" stop="17127"/>
              <exon start="16817" stop="16701"/>
              <exon start="16603" stop="16358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17150" stop="17127"/>
              <exon start="16817" stop="16701"/>
              <exon start="16603" stop="16351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216990" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16708" stop="16701"/>
              <exon start="16603" stop="16354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16603" stop="16445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATATATAACAGGCAAAAAAGTATTTCCCTCTCTCTTTTATTTAGGTTGATCA : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAG : CATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGGTTAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAG : GTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAG : ATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTTCAACTATCCGGTCAATCTTGCCGTCTCCAAGATTGCTCCTGCACTGATTGCTGGAAACTCTTTAGTCCTCAAGCCTCCAACTCAG : GGTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCTAAAGGCCTTATCAGTTGTGTGACCGGAAAAGGTTCTGAAATCGGAGATTTTCTCACTATGCATCCTGGAGTAAACTGTATAAG : CTTCACTGGTGGAGACACCGGTGTTGCAATCTCGAAGAAAGCAGGAATGGTCCCTCTACAGATGGAGCTGGGAGGAAAGGATGCTTGTATCGTGCTCGAGGATGCTGATTTAGATTTGGCTGCTGGAAACATTGTGAAAGGAGGATTTTCTTACAG : TGGTCAAAGATGCACAGCTGTTAAGGTCGTGTTGGTGATGGAATCTGTTGCTGACATTCTTGTTGAGAAGGTAAATGCCAAAGTGGCAAAGTTAACCGTTGGGCCACCTGAAGATAATTGTGATATCACTCCAGTTGTCTCCGAGTCATCCGCAAATTTCATCGAGGGGTTGGTCATGGACGCAAAGGAGAAAGATGCAACATTTTGCCAGCCATACAAGAGAGAAGGCAACCTTATCTGGCCCTTGTTGTTAGACAATGTTAGGCCGGACATGAGAATCGCTTGGGAAGAACCCTTTGGTCCAGTTTTGCCCGTTATTCGGATAAACTCAGTCGAAGAAGGAATTCACCACTGCAATGCTAGCAATTTCGGTCTGCAG : GGTTGTGTGTTCACCAAAGACATCAACAAAGCAATACTGATCAGTGATGCAATGGAAACCGGAACCGTTCAGATTAACTCAGCTCCTGCTCGTGGACCGGATCATTTTCCGTTCCAG : GGTATTAAGGACAGCGGAATTGGATCACAAGGGATCACTAACAGTATTAACATGATGACTAAAGTGAAGACCACTGTGATCAATTTGCCAACCCCTTCTTATACTATGGGGTAAATTAATCACTGTTTTTTGCTTTAGAAATTTGACAAAAATAATTAAGAATCCATGTTGTGGATGTTAATAAGCTCACACCAATTATTGTTCATTTCTTGACCTTATGAAGATTAATATTGGTGGATTAGTATTTAGCATTATTTTCGCA</gDNA_template>
            <first_frame> Y  I  *  Q  A  K  K  Y  F  P  L  S  F  I  *  V  D  H :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  E  K  I  S  F  W  K  I  C  C  Y  Y  *  S  Y  Y  K  K  D  T  I  Q  S  S  S :   M  Y  T  R  R  G  E  Q  S  N  G  N  S  K  S  S  T  K  I  M  G  *  N  T  T  M  E  K  S  R  V  T  S  *  G  S  C  N  F  E  R  T  Q  S  P  Y  C  *  M  P  W  L  R  N  C  K  T  S  *  R  C  C  H  R   : G  C  E  I  W  *  F  G  F  L  H  C  *  R  R  S  *  N  S  R  G  G  *  V  L  G  I  *  *  F  P  W  K  *  K  D  Q  I  L  S  N  I  Q   : D  T  V  G  C  D  S  G  D  S  S  F  Q  L  S  G  Q  S  C  R  L  Q  D  C  S  C  T  D  C  W  K  L  F  S  P  Q  A  S  N  S   : G  C  C  G  C  P  A  Y  G  A  L  L  P  L  S  W  I  P  *  R  P  Y  Q  L  C  D  R  K  R  F  *  N  R  R  F  S  H  Y  A  S  W  S  K  L  Y  K  :  L  H  W  W  R  H  R  C  C  N  L  E  E  S  R  N  G  P  S  T  D  G  A  G  R  K  G  C  L  Y  R  A  R  G  C  *  F  R  F  G  C  W  K  H  C  E  R  R  I  F  L  Q  :  W  S  K  M  H  S  C  *  G  R  V  G  D  G  I  C  C  *  H  S  C  *  E  G  K  C  Q  S  G  K  V  N  R  W  A  T  *  R  *  L  *  Y  H  S  S  C  L  R  V  I  R  K  F  H  R  G  V  G  H  G  R  K  G  E  R  C  N  I  L  P  A  I  Q  E  R  R  Q  P  Y  L  A  L  V  V  R  Q  C  *  A  G  H  E  N  R  L  G  R  T  L  W  S  S  F  A  R  Y  S  D  K  L  S  R  R  R  N  S  P  L  Q  C  *  Q  F  R  S  A   : G  L  C  V  H  Q  R  H  Q  Q  S  N  T  D  Q  *  C  N  G  N  R  N  R  S  D  *  L  S  S  C  S  W  T  G  S  F  S  V  P   : G  Y  *  G  Q  R  N  W  I  T  R  D  H  *  Q  Y  *  H  D  D  *  S  E  D  H  C  D  Q  F  A  N  P  F  L  Y  Y  G  V  N  *  S  L  F  F  A  L  E  I  *  Q  K  *  L  R  I  H  V  V  D  V  N  K  L  T  P  I  I  V  H  F  L  T  L  *  R  L  I  L  V  D  *  Y  L  A  L  F  S   </first_frame>
            <second_frame>  I  Y  N  R  Q  K  S  I  S  L  S  L  L  F  R  L  I   : I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  W  K  K  S  A  S  G  K  S  V  A  I  I  N  P  T  T  R  K  T  Q  Y  K  V  Q   : A  C  T  Q  E  E  V  N  K  V  M  E  I  A  K  A  A  Q  K  S  W  A  K  T  P  L  W  K  R  A  E  L  L  H  K  A  A  A  I  L  K  E  H  K  A  P  I  A  E  C  L  G  *  E  I  A  K  P  A  K  D  A  V  T  E  :  V  V  R  S  G  D  L  V  S  Y  T  A  E  E  G  V  R  I  L  G  E  G  K  F  L  V  S  D  S  F  P  G  N  E  R  T  K  Y  C  L  T  S  K  :  I  P  L  G  V  I  L  A  I  P  P  F  N  Y  P  V  N  L  A  V  S  K  I  A  P  A  L  I  A  G  N  S  L  V  L  K  P  P  T  Q  :  G  A  V  A  A  L  H  M  V  H  C  F  H  L  A  G  F  P  K  G  L  I  S  C  V  T  G  K  G  S  E  I  G  D  F  L  T  M  H  P  G  V  N  C  I  S :   F  T  G  G  D  T  G  V  A  I  S  K  K  A  G  M  V  P  L  Q  M  E  L  G  G  K  D  A  C  I  V  L  E  D  A  D  L  D  L  A  A  G  N  I  V  K  G  G  F  S  Y  S :   G  Q  R  C  T  A  V  K  V  V  L  V  M  E  S  V  A  D  I  L  V  E  K  V  N  A  K  V  A  K  L  T  V  G  P  P  E  D  N  C  D  I  T  P  V  V  S  E  S  S  A  N  F  I  E  G  L  V  M  D  A  K  E  K  D  A  T  F  C  Q  P  Y  K  R  E  G  N  L  I  W  P  L  L  L  D  N  V  R  P  D  M  R  I  A  W  E  E  P  F  G  P  V  L  P  V  I  R  I  N  S  V  E  E  G  I  H  H  C  N  A  S  N  F  G  L  Q  :  G  C  V  F  T  K  D  I  N  K  A  I  L  I  S  D  A  M  E  T  G  T  V  Q  I  N  S  A  P  A  R  G  P  D  H  F  P  F  Q  :  G  I  K  D  S  G  I  G  S  Q  G  I  T  N  S  I  N  M  M  T  K  V  K  T  T  V  I  N  L  P  T  P  S  Y  T  M  G  *  I  N  H  C  F  L  L  *  K  F  D  K  N  N  *  E  S  M  L  W  M  L  I  S  S  H  Q  L  L  F  I  S  *  P  Y  E  D  *  Y  W  W  I  S  I  *  H  Y  F  R  </second_frame>
            <third_frame>   Y  I  T  G  K  K  V  F  P  S  L  F  Y  L  G  *  S  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  G  K  N  Q  L  L  E  N  L  L  L  L  L  I  L  L  Q  E  R  H  N  T  K  F  K  :  H  V  H  K  K  R  *  T  K  *  W  K  *  Q  K  Q  H  K  N  H  G  L  K  H  H  Y  G  K  E  Q  S  Y  F  I  R  Q  L  Q  F  *  K  N  T  K  P  L  L  L  N  A  L  V  K  K  L  Q  N  Q  L  K  M  L  S  P  R :   L  *  D  L  V  I  W  F  L  T  L  L  K  K  E  L  E  F  *  G  R  V  S  S  W  Y  L  I  V  S  L  E  M  K  G  P  N  T  V  *  H  P  R :   Y  R  W  V  *  F  W  R  F  L  L  S  T  I  R  S  I  L  P  S  P  R  L  L  L  H  *  L  L  E  T  L  *  S  S  S  L  Q  L  R :   V  L  W  L  P  C  I  W  C  I  A  S  T  *  L  D  S  L  K  A  L  S  V  V  *  P  E  K  V  L  K  S  E  I  F  S  L  C  I  L  E  *  T  V  *   : A  S  L  V  E  T  P  V  L  Q  S  R  R  K  Q  E  W  S  L  Y  R  W  S  W  E  E  R  M  L  V  S  C  S  R  M  L  I  *  I  W  L  L  E  T  L  *  K  E  D  F  L  T   : V  V  K  D  A  Q  L  L  R  S  C  W  *  W  N  L  L  L  T  F  L  L  R  R  *  M  P  K  W  Q  S  *  P  L  G  H  L  K  I  I  V  I  S  L  Q  L  S  P  S  H  P  Q  I  S  S  R  G  W  S  W  T  Q  R  R  K  M  Q  H  F  A  S  H  T  R  E  K  A  T  L  S  G  P  C  C  *  T  M  L  G  R  T  *  E  S  L  G  K  N  P  L  V  Q  F  C  P  L  F  G  *  T  Q  S  K  K  E  F  T  T  A  M  L  A  I  S  V  C  R :   V  V  C  S  P  K  T  S  T  K  Q  Y  *  S  V  M  Q  W  K  P  E  P  F  R  L  T  Q  L  L  L  V  D  R  I  I  F  R  S  R :   V  L  R  T  A  E  L  D  H  K  G  S  L  T  V  L  T  *  *  L  K  *  R  P  L  *  S  I  C  Q  P  L  L  I  L  W  G  K  L  I  T  V  F  C  F  R  N  L  T  K  I  I  K  N  P  C  C  G  C  *  *  A  H  T  N  Y  C  S  F  L  D  L  M  K  I  N  I  G  G  L  V  F  S  I  I  F  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20336" stop="20301"/>
                    <exon start="19891" stop="19763"/>
                    <exon start="18892" stop="18773"/>
                    <exon start="18443" stop="18307"/>
                    <exon start="17972" stop="17817"/>
                    <exon start="17505" stop="17127"/>
                    <exon start="16817" stop="16701"/>
                    <exon start="16603" stop="16490"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1185</number_coding_nucleotides>
                  <number_encoded_amino_acids>395</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIAKPAKDAVTEVVRSGDLVSYTAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGVAISKKAGMVPLQMELGGKDACIVLEDADLDLAAGNIVKGGFSYSGQRCTAVKVVLVMESVADILVEKVNAKVAKLTVGPPEDNCDITPVVSESSANFIEGLVMDAKEKDATFCQPYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDINKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKVKTTVINLPTPSYTMG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21431" stop="21380"/>
                    <exon start="21298" stop="21122"/>
                    <exon start="20494" stop="20337"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYNRQKSISLSLLFRLIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFWKKSASGKSVAIINPTTRKTQYKVQACTQEEVNKVMEIAKAAQKSWAKTPLWKRAELLHKAAAILKEHKAPIAECLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22829" e_stop="22825"/>
            <exon e_start="22677" e_stop="22629"/>
            <exon e_start="21301" e_stop="21122"/>
            <exon e_start="20494" e_stop="20301"/>
            <exon e_start="19891" e_stop="19763"/>
            <exon e_start="18892" e_stop="18773"/>
            <exon e_start="18443" e_stop="18307"/>
            <exon e_start="17972" e_stop="17817"/>
            <exon e_start="17505" e_stop="17127"/>
            <exon e_start="16817" e_stop="16701"/>
            <exon e_start="16603" e_stop="16342"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.273" e_score="0.800"/>
          <exon-intron don_prob="0.946" acc_prob="0.000" e_score="0.531"/>
          <exon-intron don_prob="0.996" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="0.990"/>
          <exon-intron don_prob="0.999" acc_prob="0.843" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.830" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.800">
            <gDNA_exon_boundary e_start="22829" e_stop="22825" e_length="5"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.273">
            <gDNA_intron_boundary i_start="22824" i_stop="22678" i_length="147"/>
          </intron>
          <exon e_serial="2" e_score="0.531">
            <gDNA_exon_boundary e_start="22677" e_stop="22629" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.946" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22628" i_stop="21302" i_length="1327"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21301" e_stop="21122" e_length="180"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.966">
            <gDNA_intron_boundary i_start="21121" i_stop="20495" i_length="627"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="20494" e_stop="20301" e_length="194"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20300" i_stop="19892" i_length="409"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19891" e_stop="19763" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.843">
            <gDNA_intron_boundary i_start="19762" i_stop="18893" i_length="870"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18892" e_stop="18773" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.830">
            <gDNA_intron_boundary i_start="18772" i_stop="18444" i_length="329"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18443" e_stop="18307" e_length="137"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="18306" i_stop="17973" i_length="334"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="17972" e_stop="17817" e_length="156"/>
          </exon>
          <intron i_serial="8" don_prob="0.848" acc_prob="0.978">
            <gDNA_intron_boundary i_start="17816" i_stop="17506" i_length="311"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="17505" e_stop="17127" e_length="379"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.935">
            <gDNA_intron_boundary i_start="17126" i_stop="16818" i_length="309"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="16817" e_stop="16701" e_length="117"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16700" i_stop="16604" i_length="97"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="16603" e_stop="16342" e_length="262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22829" stop="22825"/>
              <exon start="22677" stop="22629"/>
              <exon start="21301" stop="21122"/>
              <exon start="20494" stop="20301"/>
              <exon start="19891" stop="19777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21298" stop="21122"/>
              <exon start="20494" stop="20301"/>
              <exon start="19891" stop="19763"/>
              <exon start="18892" stop="18773"/>
              <exon start="18443" stop="18390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21298" stop="21122"/>
              <exon start="20494" stop="20301"/>
              <exon start="19891" stop="19763"/>
              <exon start="18892" stop="18773"/>
              <exon start="18443" stop="18392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21298" stop="21122"/>
              <exon start="20494" stop="20301"/>
              <exon start="19891" stop="19763"/>
              <exon start="18892" stop="18773"/>
              <exon start="18443" stop="18411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21298" stop="21122"/>
              <exon start="20494" stop="20301"/>
              <exon start="19891" stop="19763"/>
              <exon start="18892" stop="18800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21298" stop="21122"/>
              <exon start="20494" stop="20301"/>
              <exon start="19891" stop="19763"/>
              <exon start="18892" stop="18866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21298" stop="21122"/>
              <exon start="20494" stop="20301"/>
              <exon start="19891" stop="19792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21298" stop="21122"/>
              <exon start="20494" stop="20346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20382" stop="20301"/>
              <exon start="19891" stop="19763"/>
              <exon start="18892" stop="18858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19887" stop="19763"/>
              <exon start="18892" stop="18773"/>
              <exon start="18443" stop="18307"/>
              <exon start="17972" stop="17959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19857" stop="19763"/>
              <exon start="18892" stop="18773"/>
              <exon start="18443" stop="18307"/>
              <exon start="17972" stop="17817"/>
              <exon start="17505" stop="17291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19826" stop="19763"/>
              <exon start="18892" stop="18773"/>
              <exon start="18443" stop="18307"/>
              <exon start="17972" stop="17852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18804" stop="18773"/>
              <exon start="18443" stop="18307"/>
              <exon start="17972" stop="17817"/>
              <exon start="17505" stop="17127"/>
              <exon start="16817" stop="16751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18443" stop="18307"/>
              <exon start="17972" stop="17817"/>
              <exon start="17505" stop="17130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18443" stop="18307"/>
              <exon start="17972" stop="17892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17972" stop="17817"/>
              <exon start="17505" stop="17127"/>
              <exon start="16817" stop="16708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17956" stop="17817"/>
              <exon start="17505" stop="17127"/>
              <exon start="16817" stop="16740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17479" stop="17127"/>
              <exon start="16817" stop="16701"/>
              <exon start="16603" stop="16524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17280" stop="17127"/>
              <exon start="16817" stop="16701"/>
              <exon start="16603" stop="16342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340107" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17279" stop="17127"/>
              <exon start="16817" stop="16701"/>
              <exon start="16603" stop="16351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17279" stop="17127"/>
              <exon start="16817" stop="16701"/>
              <exon start="16603" stop="16358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17150" stop="17127"/>
              <exon start="16817" stop="16701"/>
              <exon start="16603" stop="16351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216990" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16708" stop="16701"/>
              <exon start="16603" stop="16354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16603" stop="16445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAA : TGATGATATTGAACTGGTCTTTGATTTATATACGTTCTATAATTTTCAG : TAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAAATCAGCTTCTGGAAAATCTGTTGCTATTATTAATCCTACTACAAGAAAGACACAATACAAAGTTCAAG : CATGTACACAAGAAGAGGTGAACAAAGTAATGGAAATAGCAAAAGCAGCACAAAAATCATGGGCTAAAACACCACTATGGAAAAGAGCAGAGTTACTTCATAAGGCAGCTGCAATTTTGAAAGAACACAAAGCCCCTATTGCTGAATGCCTTGGTTAAGAAATTGCAAAACCAGCTAAAGATGCTGTCACCGAG : GTTGTGAGATCTGGTGATTTGGTTTCTTACACTGCTGAAGAAGGAGTTAGAATTCTAGGGGAGGGTAAGTTCTTGGTATCTGATAGTTTCCCTGGAAATGAAAGGACCAAATACTGTCTAACATCCAAG : ATACCGTTGGGTGTGATTCTGGCGATTCCTCCTTTCAACTATCCGGTCAATCTTGCCGTCTCCAAGATTGCTCCTGCACTGATTGCTGGAAACTCTTTAGTCCTCAAGCCTCCAACTCAG : GGTGCTGTGGCTGCCCTGCATATGGTGCATTGCTTCCACTTAGCTGGATTCCCTAAAGGCCTTATCAGTTGTGTGACCGGAAAAGGTTCTGAAATCGGAGATTTTCTCACTATGCATCCTGGAGTAAACTGTATAAG : CTTCACTGGTGGAGACACCGGTGTTGCAATCTCGAAGAAAGCAGGAATGGTCCCTCTACAGATGGAGCTGGGAGGAAAGGATGCTTGTATCGTGCTCGAGGATGCTGATTTAGATTTGGCTGCTGGAAACATTGTGAAAGGAGGATTTTCTTACAG : TGGTCAAAGATGCACAGCTGTTAAGGTCGTGTTGGTGATGGAATCTGTTGCTGACATTCTTGTTGAGAAGGTAAATGCCAAAGTGGCAAAGTTAACCGTTGGGCCACCTGAAGATAATTGTGATATCACTCCAGTTGTCTCCGAGTCATCCGCAAATTTCATCGAGGGGTTGGTCATGGACGCAAAGGAGAAAGATGCAACATTTTGCCAGCCATACAAGAGAGAAGGCAACCTTATCTGGCCCTTGTTGTTAGACAATGTTAGGCCGGACATGAGAATCGCTTGGGAAGAACCCTTTGGTCCAGTTTTGCCCGTTATTCGGATAAACTCAGTCGAAGAAGGAATTCACCACTGCAATGCTAGCAATTTCGGTCTGCAG : GGTTGTGTGTTCACCAAAGACATCAACAAAGCAATACTGATCAGTGATGCAATGGAAACCGGAACCGTTCAGATTAACTCAGCTCCTGCTCGTGGACCGGATCATTTTCCGTTCCAG : GGTATTAAGGACAGCGGAATTGGATCACAAGGGATCACTAACAGTATTAACATGATGACTAAAGTGAAGACCACTGTGATCAATTTGCCAACCCCTTCTTATACTATGGGGTAAATTAATCACTGTTTTTTGCTTTAGAAATTTGACAAAAATAATTAAGAATCCATGTTGTGGATGTTAATAAGCTCACACCAATTATTGTTCATTTCTTGACCTTATGAAGATTAATATTGGTGGATTAGTATTTAGCATTATTTTCGCA</gDNA_template>
            <first_frame> E  N :   D  D  I  E  L  V  F  D  L  Y  T  F  Y  N  F  Q  :  *  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  G  K  N  Q  L  L  E  N  L  L  L  L  L  I  L  L  Q  E  R  H  N  T  K  F  K  :  H  V  H  K  K  R  *  T  K  *  W  K  *  Q  K  Q  H  K  N  H  G  L  K  H  H  Y  G  K  E  Q  S  Y  F  I  R  Q  L  Q  F  *  K  N  T  K  P  L  L  L  N  A  L  V  K  K  L  Q  N  Q  L  K  M  L  S  P  R :   L  *  D  L  V  I  W  F  L  T  L  L  K  K  E  L  E  F  *  G  R  V  S  S  W  Y  L  I  V  S  L  E  M  K  G  P  N  T  V  *  H  P  R :   Y  R  W  V  *  F  W  R  F  L  L  S  T  I  R  S  I  L  P  S  P  R  L  L  L  H  *  L  L  E  T  L  *  S  S  S  L  Q  L  R :   V  L  W  L  P  C  I  W  C  I  A  S  T  *  L  D  S  L  K  A  L  S  V  V  *  P  E  K  V  L  K  S  E  I  F  S  L  C  I  L  E  *  T  V  *   : A  S  L  V  E  T  P  V  L  Q  S  R  R  K  Q  E  W  S  L  Y  R  W  S  W  E  E  R  M  L  V  S  C  S  R  M  L  I  *  I  W  L  L  E  T  L  *  K  E  D  F  L  T   : V  V  K  D  A  Q  L  L  R  S  C  W  *  W  N  L  L  L  T  F  L  L  R  R  *  M  P  K  W  Q  S  *  P  L  G  H  L  K  I  I  V  I  S  L  Q  L  S  P  S  H  P  Q  I  S  S  R  G  W  S  W  T  Q  R  R  K  M  Q  H  F  A  S  H  T  R  E  K  A  T  L  S  G  P  C  C  *  T  M  L  G  R  T  *  E  S  L  G  K  N  P  L  V  Q  F  C  P  L  F  G  *  T  Q  S  K  K  E  F  T  T  A  M  L  A  I  S  V  C  R :   V  V  C  S  P  K  T  S  T  K  Q  Y  *  S  V  M  Q  W  K  P  E  P  F  R  L  T  Q  L  L  L  V  D  R  I  I  F  R  S  R :   V  L  R  T  A  E  L  D  H  K  G  S  L  T  V  L  T  *  *  L  K  *  R  P  L  *  S  I  C  Q  P  L  L  I  L  W  G  K  L  I  T  V  F  C  F  R  N  L  T  K  I  I  K  N  P  C  C  G  C  *  *  A  H  T  N  Y  C  S  F  L  D  L  M  K  I  N  I  G  G  L  V  F  S  I  I  F  A </first_frame>
            <second_frame>  K   : M  M  I  L  N  W  S  L  I  Y  I  R  S  I  I  F  S :   S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  E  K  I  S  F  W  K  I  C  C  Y  Y  *  S  Y  Y  K  K  D  T  I  Q  S  S  S :   M  Y  T  R  R  G  E  Q  S  N  G  N  S  K  S  S  T  K  I  M  G  *  N  T  T  M  E  K  S  R  V  T  S  *  G  S  C  N  F  E  R  T  Q  S  P  Y  C  *  M  P  W  L  R  N  C  K  T  S  *  R  C  C  H  R   : G  C  E  I  W  *  F  G  F  L  H  C  *  R  R  S  *  N  S  R  G  G  *  V  L  G  I  *  *  F  P  W  K  *  K  D  Q  I  L  S  N  I  Q   : D  T  V  G  C  D  S  G  D  S  S  F  Q  L  S  G  Q  S  C  R  L  Q  D  C  S  C  T  D  C  W  K  L  F  S  P  Q  A  S  N  S   : G  C  C  G  C  P  A  Y  G  A  L  L  P  L  S  W  I  P  *  R  P  Y  Q  L  C  D  R  K  R  F  *  N  R  R  F  S  H  Y  A  S  W  S  K  L  Y  K  :  L  H  W  W  R  H  R  C  C  N  L  E  E  S  R  N  G  P  S  T  D  G  A  G  R  K  G  C  L  Y  R  A  R  G  C  *  F  R  F  G  C  W  K  H  C  E  R  R  I  F  L  Q  :  W  S  K  M  H  S  C  *  G  R  V  G  D  G  I  C  C  *  H  S  C  *  E  G  K  C  Q  S  G  K  V  N  R  W  A  T  *  R  *  L  *  Y  H  S  S  C  L  R  V  I  R  K  F  H  R  G  V  G  H  G  R  K  G  E  R  C  N  I  L  P  A  I  Q  E  R  R  Q  P  Y  L  A  L  V  V  R  Q  C  *  A  G  H  E  N  R  L  G  R  T  L  W  S  S  F  A  R  Y  S  D  K  L  S  R  R  R  N  S  P  L  Q  C  *  Q  F  R  S  A   : G  L  C  V  H  Q  R  H  Q  Q  S  N  T  D  Q  *  C  N  G  N  R  N  R  S  D  *  L  S  S  C  S  W  T  G  S  F  S  V  P   : G  Y  *  G  Q  R  N  W  I  T  R  D  H  *  Q  Y  *  H  D  D  *  S  E  D  H  C  D  Q  F  A  N  P  F  L  Y  Y  G  V  N  *  S  L  F  F  A  L  E  I  *  Q  K  *  L  R  I  H  V  V  D  V  N  K  L  T  P  I  I  V  H  F  L  T  L  *  R  L  I  L  V  D  *  Y  L  A  L  F  S   </second_frame>
            <third_frame>   K  :  *  *  Y  *  T  G  L  *  F  I  Y  V  L  *  F  S   : V  V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  W  K  K  S  A  S  G  K  S  V  A  I  I  N  P  T  T  R  K  T  Q  Y  K  V  Q   : A  C  T  Q  E  E  V  N  K  V  M  E  I  A  K  A  A  Q  K  S  W  A  K  T  P  L  W  K  R  A  E  L  L  H  K  A  A  A  I  L  K  E  H  K  A  P  I  A  E  C  L  G  *  E  I  A  K  P  A  K  D  A  V  T  E  :  V  V  R  S  G  D  L  V  S  Y  T  A  E  E  G  V  R  I  L  G  E  G  K  F  L  V  S  D  S  F  P  G  N  E  R  T  K  Y  C  L  T  S  K  :  I  P  L  G  V  I  L  A  I  P  P  F  N  Y  P  V  N  L  A  V  S  K  I  A  P  A  L  I  A  G  N  S  L  V  L  K  P  P  T  Q  :  G  A  V  A  A  L  H  M  V  H  C  F  H  L  A  G  F  P  K  G  L  I  S  C  V  T  G  K  G  S  E  I  G  D  F  L  T  M  H  P  G  V  N  C  I  S :   F  T  G  G  D  T  G  V  A  I  S  K  K  A  G  M  V  P  L  Q  M  E  L  G  G  K  D  A  C  I  V  L  E  D  A  D  L  D  L  A  A  G  N  I  V  K  G  G  F  S  Y  S :   G  Q  R  C  T  A  V  K  V  V  L  V  M  E  S  V  A  D  I  L  V  E  K  V  N  A  K  V  A  K  L  T  V  G  P  P  E  D  N  C  D  I  T  P  V  V  S  E  S  S  A  N  F  I  E  G  L  V  M  D  A  K  E  K  D  A  T  F  C  Q  P  Y  K  R  E  G  N  L  I  W  P  L  L  L  D  N  V  R  P  D  M  R  I  A  W  E  E  P  F  G  P  V  L  P  V  I  R  I  N  S  V  E  E  G  I  H  H  C  N  A  S  N  F  G  L  Q  :  G  C  V  F  T  K  D  I  N  K  A  I  L  I  S  D  A  M  E  T  G  T  V  Q  I  N  S  A  P  A  R  G  P  D  H  F  P  F  Q  :  G  I  K  D  S  G  I  G  S  Q  G  I  T  N  S  I  N  M  M  T  K  V  K  T  T  V  I  N  L  P  T  P  S  Y  T  M  G  *  I  N  H  C  F  L  L  *  K  F  D  K  N  N  *  E  S  M  L  W  M  L  I  S  S  H  Q  L  L  F  I  S  *  P  Y  E  D  *  Y  W  W  I  S  I  *  H  Y  F  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20336" stop="20301"/>
                    <exon start="19891" stop="19763"/>
                    <exon start="18892" stop="18773"/>
                    <exon start="18443" stop="18307"/>
                    <exon start="17972" stop="17817"/>
                    <exon start="17505" stop="17127"/>
                    <exon start="16817" stop="16701"/>
                    <exon start="16603" stop="16490"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1185</number_coding_nucleotides>
                  <number_encoded_amino_acids>395</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIAKPAKDAVTEVVRSGDLVSYTAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGVAISKKAGMVPLQMELGGKDACIVLEDADLDLAAGNIVKGGFSYSGQRCTAVKVVLVMESVADILVEKVNAKVAKLTVGPPEDNCDITPVVSESSANFIEGLVMDAKEKDATFCQPYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDINKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKVKTTVINLPTPSYTMG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22635" stop="22629"/>
                    <exon start="21301" stop="21122"/>
                    <exon start="20494" stop="20337"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSVVFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFWKKSASGKSVAIINPTTRKTQYKVQACTQEEVNKVMEIAKAAQKSWAKTPLWKRAELLHKAAAILKEHKAPIAECLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="26600" PGL_stop="25619"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26600" e_stop="26440"/>
            <exon e_start="26264" e_stop="25619"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26600" e_stop="26440" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.975">
            <gDNA_intron_boundary i_start="26439" i_stop="26265" i_length="175"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="26264" e_stop="25619" e_length="646"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26600" stop="26440"/>
              <exon start="26264" stop="25709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26220" stop="25746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26220" stop="25746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26220" stop="25746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26133" stop="25619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26052" stop="25693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218084" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26003" stop="25693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218008" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTCCGGCGAATGGATATGCTCATCAATTTCACTGACCCCATGGTGGCAACGAAATTTGACGCGAAATCATGCACATGGGCATTTGGGATGAATTTGTTTGATCTGCAGGAGTGGAGGAAACGAAACTTGACTGGGCTCTATCACAAGTACTTGGAGCTG : GGAAGTGATAGACCATTAATGAAAGCTGGTACTTTGCCCATTGGTTGGATGACCTTCTACAAACATACACGTGCTATAGATCGGAGATGGCATGTCTTGGGATTGGGGTACGACTCTGGTGTCAAATTGAATGAAATTGAGCAAGCAGCTGTGATTCATTATGATGGAGTTATGAAACCATGGTTAGAGATTGGACTCCAGAAGTTCAAGCCGTACTGGAAGAAACACGTTAGGTATGAACATCCTTTTGTGCAACAATGCAATATTCATGACTAGGAATTTTATCCTTTAGCAGTAGGCTGAGTTCCATTTCACCACAATCACGTAGTGTAGGAACCCCTCACGTTCACCTTATTCTTTCACACATTGATCCCGCAATTTTTAACTTGTAAAGTCCAACTTTTACGCCCCTCCTGTCCACGTTTATTTCCTGCTCAGTGGTCATAGAAATTTATCCCACAATAGCAATAACTTGGGACCTGATATTGGCATGTCCCTGAGATTCCTGCAATGCTTGGACTTGCATGTATATTGATCTTGTAGAATGCTAAAAATGTTCTTATAATTTACCAGTTGTAGATGAGATAAGAAATATATTTCTCTGTGACATTCTTCTTGTAGAATGTATATTGTTGGAGAGGCTTTG</gDNA_template>
            <first_frame> H  S  G  E  W  I  C  S  S  I  S  L  T  P  W  W  Q  R  N  L  T  R  N  H  A  H  G  H  L  G  *  I  C  L  I  C  R  S  G  G  N  E  T  *  L  G  S  I  T  S  T  W  S  W :   E  V  I  D  H  *  *  K  L  V  L  C  P  L  V  G  *  P  S  T  N  I  H  V  L  *  I  G  D  G  M  S  W  D  W  G  T  T  L  V  S  N  *  M  K  L  S  K  Q  L  *  F  I  M  M  E  L  *  N  H  G  *  R  L  D  S  R  S  S  S  R  T  G  R  N  T  L  G  M  N  I  L  L  C  N  N  A  I  F  M  T  R  N  F  I  L  *  Q  *  A  E  F  H  F  T  T  I  T  *  C  R  N  P  S  R  S  P  Y  S  F  T  H  *  S  R  N  F  *  L  V  K  S  N  F  Y  A  P  P  V  H  V  Y  F  L  L  S  G  H  R  N  L  S  H  N  S  N  N  L  G  P  D  I  G  M  S  L  R  F  L  Q  C  L  D  L  H  V  Y  *  S  C  R  M  L  K  M  F  L  *  F  T  S  C  R  *  D  K  K  Y  I  S  L  *  H  S  S  C  R  M  Y  I  V  G  E  A  L </first_frame>
            <second_frame>  I  P  A  N  G  Y  A  H  Q  F  H  *  P  H  G  G  N  E  I  *  R  E  I  M  H  M  G  I  W  D  E  F  V  *  S  A  G  V  E  E  T  K  L  D  W  A  L  S  Q  V  L  G  A   : G  K  *  *  T  I  N  E  S  W  Y  F  A  H  W  L  D  D  L  L  Q  T  Y  T  C  Y  R  S  E  M  A  C  L  G  I  G  V  R  L  W  C  Q  I  E  *  N  *  A  S  S  C  D  S  L  *  W  S  Y  E  T  M  V  R  D  W  T  P  E  V  Q  A  V  L  E  E  T  R  *  V  *  T  S  F  C  A  T  M  Q  Y  S  *  L  G  I  L  S  F  S  S  R  L  S  S  I  S  P  Q  S  R  S  V  G  T  P  H  V  H  L  I  L  S  H  I  D  P  A  I  F  N  L  *  S  P  T  F  T  P  L  L  S  T  F  I  S  C  S  V  V  I  E  I  Y  P  T  I  A  I  T  W  D  L  I  L  A  C  P  *  D  S  C  N  A  W  T  C  M  Y  I  D  L  V  E  C  *  K  C  S  Y  N  L  P  V  V  D  E  I  R  N  I  F  L  C  D  I  L  L  V  E  C  I  L  L  E  R  L   </second_frame>
            <third_frame>   F  R  R  M  D  M  L  I  N  F  T  D  P  M  V  A  T  K  F  D  A  K  S  C  T  W  A  F  G  M  N  L  F  D  L  Q  E  W  R  K  R  N  L  T  G  L  Y  H  K  Y  L  E  L  :  G  S  D  R  P  L  M  K  A  G  T  L  P  I  G  W  M  T  F  Y  K  H  T  R  A  I  D  R  R  W  H  V  L  G  L  G  Y  D  S  G  V  K  L  N  E  I  E  Q  A  A  V  I  H  Y  D  G  V  M  K  P  W  L  E  I  G  L  Q  K  F  K  P  Y  W  K  K  H  V  R  Y  E  H  P  F  V  Q  Q  C  N  I  H  D  *  E  F  Y  P  L  A  V  G  *  V  P  F  H  H  N  H  V  V  *  E  P  L  T  F  T  L  F  F  H  T  L  I  P  Q  F  L  T  C  K  V  Q  L  L  R  P  S  C  P  R  L  F  P  A  Q  W  S  *  K  F  I  P  Q  *  Q  *  L  G  T  *  Y  W  H  V  P  E  I  P  A  M  L  G  L  A  C  I  L  I  L  *  N  A  K  N  V  L  I  I  Y  Q  L  *  M  R  *  E  I  Y  F  S  V  T  F  F  L  *  N  V  Y  C  W  R  G  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26598" stop="26440"/>
                    <exon start="26264" stop="25989"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRRMDMLINFTDPMVATKFDAKSCTWAFGMNLFDLQEWRKRNLTGLYHKYLELGSDRPLMKAGTLPIGWMTFYKHTRAIDRRWHVLGLGYDSGVKLNEIEQAAVIHYDGVMKPWLEIGLQKFKPYWKKHVRYEHPFVQQCNIHD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="29386" PGL_stop="26681"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29386" e_stop="29169"/>
            <exon e_start="28330" e_stop="27973"/>
            <exon e_start="26955" e_stop="26681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.870" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29386" e_stop="29169" e_length="218"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.870">
            <gDNA_intron_boundary i_start="29168" i_stop="28331" i_length="838"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28330" e_stop="27973" e_length="358"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27972" i_stop="26956" i_length="1017"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26955" e_stop="26681" e_length="275"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29386" stop="29169"/>
              <exon start="28330" stop="27973"/>
              <exon start="26955" stop="26907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29304" stop="29169"/>
              <exon start="28330" stop="27973"/>
              <exon start="26955" stop="26892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28113" stop="27973"/>
              <exon start="26955" stop="26681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272347" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACCAAAAGAGGTGCTTCAGAATGTACAGTCTCATCCACGGAGGGTATTGGATGAGAGGGTGAAGGAGATTAAAGATCAGCTGATAAGGGCCAAAGCATTCTTGAATTTTGCACCGGCAGGTAGTAACTCTAATTTTGTGAAAGAGATAAAGCTACGAATTAAAGACTTGGAACGAGCTGCTGGTGAAGTTTCAAAAGATTCTGATTTGTCTAGGAG : GGCCATACAGAAGATGAAGGCTATGAGTGCAACCCTGTCGAAAGCCAGTAGATTGTTCCCTGATTGCTCGGCAATGGTGAAAAAACTTCGTGCGATGACTTATAATGCTGAGGAACAACTTCGAGCGCAAAAGAATCAAGCTTCCTTCCTTGAAAATCTTGCCGGAAGAACTACTCCGAAAGGCCTTCATTGCCTCTCCATGCGGTTAACCACTGAGTACTTTGCCCTACAAACCGAGGAGCAGAAACTACCTAACCAACATAAATTTCAGAATCCAGATCTCCACCACTTCGCTGTTTTCTCTGACAATGTTTTGGCATGTTCTGCAGTTGTCAACTCAACTGTATCAACTGCTAGG : GCTCCAGAGAAGATTGTGTTTCATATAGTGACGGATTCTCTTAACCTACCAGCAATGACAATGTGGTTCTTGTCGAATCCTCCTGGCAAAGCAACAATTCAGATCCAGAGCATAGACATGTTTGATTGGTTACTGAACAAGGATACTCTGCAGAAGCAAGAGTCTCTTGATCCAAGATACACTTCTCCACTGAATCACCTGCGCTTCTACCTGCCTGAAATTTTTCCTTATCTCAACAAGATAGTGCTCCTTGATCATGACGTGGTTGTGAAAAG</gDNA_template>
            <first_frame> R  P  K  E  V  L  Q  N  V  Q  S  H  P  R  R  V  L  D  E  R  V  K  E  I  K  D  Q  L  I  R  A  K  A  F  L  N  F  A  P  A  G  S  N  S  N  F  V  K  E  I  K  L  R  I  K  D  L  E  R  A  A  G  E  V  S  K  D  S  D  L  S  R  R :   A  I  Q  K  M  K  A  M  S  A  T  L  S  K  A  S  R  L  F  P  D  C  S  A  M  V  K  K  L  R  A  M  T  Y  N  A  E  E  Q  L  R  A  Q  K  N  Q  A  S  F  L  E  N  L  A  G  R  T  T  P  K  G  L  H  C  L  S  M  R  L  T  T  E  Y  F  A  L  Q  T  E  E  Q  K  L  P  N  Q  H  K  F  Q  N  P  D  L  H  H  F  A  V  F  S  D  N  V  L  A  C  S  A  V  V  N  S  T  V  S  T  A  R  :  A  P  E  K  I  V  F  H  I  V  T  D  S  L  N  L  P  A  M  T  M  W  F  L  S  N  P  P  G  K  A  T  I  Q  I  Q  S  I  D  M  F  D  W  L  L  N  K  D  T  L  Q  K  Q  E  S  L  D  P  R  Y  T  S  P  L  N  H  L  R  F  Y  L  P  E  I  F  P  Y  L  N  K  I  V  L  L  D  H  D  V  V  V  K   </first_frame>
            <second_frame>  D  Q  K  R  C  F  R  M  Y  S  L  I  H  G  G  Y  W  M  R  G  *  R  R  L  K  I  S  *  *  G  P  K  H  S  *  I  L  H  R  Q  V  V  T  L  I  L  *  K  R  *  S  Y  E  L  K  T  W  N  E  L  L  V  K  F  Q  K  I  L  I  C  L  G   : G  P  Y  R  R  *  R  L  *  V  Q  P  C  R  K  P  V  D  C  S  L  I  A  R  Q  W  *  K  N  F  V  R  *  L  I  M  L  R  N  N  F  E  R  K  R  I  K  L  P  S  L  K  I  L  P  E  E  L  L  R  K  A  F  I  A  S  P  C  G  *  P  L  S  T  L  P  Y  K  P  R  S  R  N  Y  L  T  N  I  N  F  R  I  Q  I  S  T  T  S  L  F  S  L  T  M  F  W  H  V  L  Q  L  S  T  Q  L  Y  Q  L  L  G :   L  Q  R  R  L  C  F  I  *  *  R  I  L  L  T  Y  Q  Q  *  Q  C  G  S  C  R  I  L  L  A  K  Q  Q  F  R  S  R  A  *  T  C  L  I  G  Y  *  T  R  I  L  C  R  S  K  S  L  L  I  Q  D  T  L  L  H  *  I  T  C  A  S  T  C  L  K  F  F  L  I  S  T  R  *  C  S  L  I  M  T  W  L  *  K  </second_frame>
            <third_frame>   T  K  R  G  A  S  E  C  T  V  S  S  T  E  G  I  G  *  E  G  E  G  D  *  R  S  A  D  K  G  Q  S  I  L  E  F  C  T  G  R  *  *  L  *  F  C  E  R  D  K  A  T  N  *  R  L  G  T  S  C  W  *  S  F  K  R  F  *  F  V  *  E  :  G  H  T  E  D  E  G  Y  E  C  N  P  V  E  S  Q  *  I  V  P  *  L  L  G  N  G  E  K  T  S  C  D  D  L  *  C  *  G  T  T  S  S  A  K  E  S  S  F  L  P  *  K  S  C  R  K  N  Y  S  E  R  P  S  L  P  L  H  A  V  N  H  *  V  L  C  P  T  N  R  G  A  E  T  T  *  P  T  *  I  S  E  S  R  S  P  P  L  R  C  F  L  *  Q  C  F  G  M  F  C  S  C  Q  L  N  C  I  N  C  *   : G  S  R  E  D  C  V  S  Y  S  D  G  F  S  *  P  T  S  N  D  N  V  V  L  V  E  S  S  W  Q  S  N  N  S  D  P  E  H  R  H  V  *  L  V  T  E  Q  G  Y  S  A  E  A  R  V  S  *  S  K  I  H  F  S  T  E  S  P  A  L  L  P  A  *  N  F  S  L  S  Q  Q  D  S  A  P  *  S  *  R  G  C  E  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29386" stop="29169"/>
                    <exon start="28330" stop="27973"/>
                    <exon start="26955" stop="26683"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPKEVLQNVQSHPRRVLDERVKEIKDQLIRAKAFLNFAPAGSNSNFVKEIKLRIKDLERAAGEVSKDSDLSRRAIQKMKAMSATLSKASRLFPDCSAMVKKLRAMTYNAEEQLRAQKNQASFLENLAGRTTPKGLHCLSMRLTTEYFALQTEEQKLPNQHKFQNPDLHHFAVFSDNVLACSAVVNSTVSTARAPEKIVFHIVTDSLNLPAMTMWFLSNPPGKATIQIQSIDMFDWLLNKDTLQKQESLDPRYTSPLNHLRFYLPEIFPYLNKIVLLDHDVVVK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="32672" PGL_stop="30570"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32672" e_stop="32295"/>
            <exon e_start="32182" e_stop="32148"/>
            <exon e_start="30762" e_stop="30570"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.406" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32672" e_stop="32295" e_length="378"/>
          </exon>
          <intron i_serial="1" don_prob="0.406" acc_prob="0.998">
            <gDNA_intron_boundary i_start="32294" i_stop="32183" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32182" e_stop="32148" e_length="35"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32147" i_stop="30763" i_length="1385"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="30762" e_stop="30570" e_length="193"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32672" stop="32295"/>
              <exon start="32182" stop="32148"/>
              <exon start="30762" stop="30570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32666" stop="32295"/>
              <exon start="32182" stop="32148"/>
              <exon start="30762" stop="30733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323938" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCACTTCACGGGTACACACGAACATGGCACCCCCCAATCAATCTCCGATTTCATCGCCATTCTTTAATCAAAATTAAATTTTTTTAATTAAAAAAAAACCCAAATCGATTCCGTTTGACCTAGAAGACAAAAAACCAGAAAAAACCCTAGTACCATTTTTTTTTTTGGTATCAGGAACTGTGTATTTTGATATACCCTTTATTGAATCTGAATCGATCCAAAAACCCCAAGTGTTGTTTGAGTTAATTACATGTCTTAGATGAGGTTTACTAGAAGATTTACGAGGATTTTTATTATCCTCTGTTTGATTGCTGTTTTTGTTACAACTCCAATCTTGTTGTTTTCTTCACATAGGTTGATTCATCTTGGTTCTGATG : CATCGAAGGAGTTTGTTGGAGATTTATCCATTCTT : AAGCACAGGATAGAGGTTCAGGCGCTTAATGCAGTCCAACAGGTGCTATAAATTCTATATAAGTTCTTCCAACTGTAAACATCCACTTGAATTGAACTTTTGTTTGCAAACCTTTTTCTGCTTTTTGGTTTAGGAAGAAGTTGAAACCCTCAAAGAACCAATCTTGGATGTCTACCGAGATGGAAACCAAATT</gDNA_template>
            <first_frame> C  T  S  R  V  H  T  N  M  A  P  P  N  Q  S  P  I  S  S  P  F  F  N  Q  N  *  I  F  L  I  K  K  K  P  K  S  I  P  F  D  L  E  D  K  K  P  E  K  T  L  V  P  F  F  F  L  V  S  G  T  V  Y  F  D  I  P  F  I  E  S  E  S  I  Q  K  P  Q  V  L  F  E  L  I  T  C  L  R  *  G  L  L  E  D  L  R  G  F  L  L  S  S  V  *  L  L  F  L  L  Q  L  Q  S  C  C  F  L  H  I  G  *  F  I  L  V  L  M  :  H  R  R  S  L  L  E  I  Y  P  F  L :   S  T  G  *  R  F  R  R  L  M  Q  S  N  R  C  Y  K  F  Y  I  S  S  S  N  C  K  H  P  L  E  L  N  F  C  L  Q  T  F  F  C  F  L  V  *  E  E  V  E  T  L  K  E  P  I  L  D  V  Y  R  D  G  N  Q  I </first_frame>
            <second_frame>  A  L  H  G  Y  T  R  T  W  H  P  P  I  N  L  R  F  H  R  H  S  L  I  K  I  K  F  F  *  L  K  K  N  P  N  R  F  R  L  T  *  K  T  K  N  Q  K  K  P  *  Y  H  F  F  F  W  Y  Q  E  L  C  I  L  I  Y  P  L  L  N  L  N  R  S  K  N  P  K  C  C  L  S  *  L  H  V  L  D  E  V  Y  *  K  I  Y  E  D  F  Y  Y  P  L  F  D  C  C  F  C  Y  N  S  N  L  V  V  F  F  T  *  V  D  S  S  W  F  *  C :   I  E  G  V  C  W  R  F  I  H  S   : *  A  Q  D  R  G  S  G  A  *  C  S  P  T  G  A  I  N  S  I  *  V  L  P  T  V  N  I  H  L  N  *  T  F  V  C  K  P  F  S  A  F  W  F  R  K  K  L  K  P  S  K  N  Q  S  W  M  S  T  E  M  E  T  K   </second_frame>
            <third_frame>   H  F  T  G  T  H  E  H  G  T  P  Q  S  I  S  D  F  I  A  I  L  *  S  K  L  N  F  F  N  *  K  K  T  Q  I  D  S  V  *  P  R  R  Q  K  T  R  K  N  P  S  T  I  F  F  F  G  I  R  N  C  V  F  *  Y  T  L  Y  *  I  *  I  D  P  K  T  P  S  V  V  *  V  N  Y  M  S  *  M  R  F  T  R  R  F  T  R  I  F  I  I  L  C  L  I  A  V  F  V  T  T  P  I  L  L  F  S  S  H  R  L  I  H  L  G  S  D   : A  S  K  E  F  V  G  D  L  S  I  L  :  K  H  R  I  E  V  Q  A  L  N  A  V  Q  Q  V  L  *  I  L  Y  K  F  F  Q  L  *  T  S  T  *  I  E  L  L  F  A  N  L  F  L  L  F  G  L  G  R  S  *  N  P  Q  R  T  N  L  G  C  L  P  R  W  K  P  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32412" stop="32295"/>
                    <exon start="32182" stop="32148"/>
                    <exon start="30762" stop="30712"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MRFTRRFTRIFIILCLIAVFVTTPILLFSSHRLIHLGSDASKEFVGDLSILKHRIEVQALNAVQQVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="37052" PGL_stop="39894"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37052" e_stop="37175"/>
            <exon e_start="37265" e_stop="37322"/>
            <exon e_start="38300" e_stop="38408"/>
            <exon e_start="38567" e_stop="38711"/>
            <exon e_start="39442" e_stop="39493"/>
            <exon e_start="39579" e_stop="39725"/>
            <exon e_start="39820" e_stop="39894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.839" acc_prob="0.265" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.857" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37052" e_stop="37175" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="37176" i_stop="37264" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37265" e_stop="37322" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.839" acc_prob="0.265">
            <gDNA_intron_boundary i_start="37323" i_stop="38299" i_length="977"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38300" e_stop="38408" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="38409" i_stop="38566" i_length="158"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38567" e_stop="38711" e_length="145"/>
          </exon>
          <intron i_serial="4" don_prob="0.969" acc_prob="0.991">
            <gDNA_intron_boundary i_start="38712" i_stop="39441" i_length="730"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39442" e_stop="39493" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.949" acc_prob="0.994">
            <gDNA_intron_boundary i_start="39494" i_stop="39578" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="39579" e_stop="39725" e_length="147"/>
          </exon>
          <intron i_serial="6" don_prob="0.857" acc_prob="0.968">
            <gDNA_intron_boundary i_start="39726" i_stop="39819" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="39820" e_stop="39894" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37052" stop="37175"/>
              <exon start="37265" stop="37322"/>
              <exon start="38300" stop="38408"/>
              <exon start="38567" stop="38711"/>
              <exon start="39442" stop="39493"/>
              <exon start="39579" stop="39725"/>
              <exon start="39820" stop="39894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263622" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATTTTCAACAAAATTATCACAAAGTCGTGGCTTTTTACACTCTTTTCACAAAAGGGTGTCTTTTTCTTCTTCATTCTTGTCTGTCAGATGTTTTTCTGCTGTTTCACAAAAGCCTCTCAG : ATATGCTGTTCTTGGTGCTGGATTTGCTGGATTGTCTGTGGTTTGGCATTTGTTGCAA : CAAACTTCAGAGGAATCAAATTTTTGCATAGACATATATGATGAAGTTGGCATTGGTGGAGGTGCATCTGGAATGTCTGGTGGACTCCTTCATCCCTATTCCCCCAAAG : TTAAGCTTCTGTGGCGGGGAGAAGAGTGCTGGAAAGAAAGTTTAAAGCTTCTAAATGTTGCTGAAGATGCTCGATCTTCCAAGTCCTTAGACATGGTTATGCCTAAAACTGGGCTAAAAGAAGGTGACTTTATAGTCAGGAGAAG : CGGAATCGTGAGACCGGTGCTCTCTGCGAAAAATATGCGCATGATGAATGAT : AATGCTCAAAACTGCATTGCCAGCTGCAGAATTGAGTCGATCCACAAGGATGCTGCACAAAAGCTTGTACCTGAATTGTGTGTGCCCCTGGACTTAGCCTTCCATATGCCTGAAGCCGTGAATGTTAATCCTCAGAATTATCTTGAG : GCTCTCTACTTAGCATGCAAAACTTTTGTGAAATCCAAGTGCAGTTTTGGCATTTCATGTAAAGAGTTAAATTTG</gDNA_template>
            <first_frame> F  Y  F  Q  Q  N  Y  H  K  V  V  A  F  Y  T  L  F  T  K  G  C  L  F  L  L  H  S  C  L  S  D  V  F  L  L  F  H  K  S  L  S   : D  M  L  F  L  V  L  D  L  L  D  C  L  W  F  G  I  C  C  N :   K  L  Q  R  N  Q  I  F  A  *  T  Y  M  M  K  L  A  L  V  E  V  H  L  E  C  L  V  D  S  F  I  P  I  P  P  K  :  L  S  F  C  G  G  E  K  S  A  G  K  K  V  *  S  F  *  M  L  L  K  M  L  D  L  P  S  P  *  T  W  L  C  L  K  L  G  *  K  K  V  T  L  *  S  G  E   : A  E  S  *  D  R  C  S  L  R  K  I  C  A  *  *  M  I :   M  L  K  T  A  L  P  A  A  E  L  S  R  S  T  R  M  L  H  K  S  L  Y  L  N  C  V  C  P  W  T  *  P  S  I  C  L  K  P  *  M  L  I  L  R  I  I  L  R :   L  S  T  *  H  A  K  L  L  *  N  P  S  A  V  L  A  F  H  V  K  S  *  I   </first_frame>
            <second_frame>  F  I  F  N  K  I  I  T  K  S  W  L  F  T  L  F  S  Q  K  G  V  F  F  F  F  I  L  V  C  Q  M  F  F  C  C  F  T  K  A  S  Q  :  I  C  C  S  W  C  W  I  C  W  I  V  C  G  L  A  F  V  A   : T  N  F  R  G  I  K  F  L  H  R  H  I  *  *  S  W  H  W  W  R  C  I  W  N  V  W  W  T  P  S  S  L  F  P  Q  S :   *  A  S  V  A  G  R  R  V  L  E  R  K  F  K  A  S  K  C  C  *  R  C  S  I  F  Q  V  L  R  H  G  Y  A  *  N  W  A  K  R  R  *  L  Y  S  Q  E  K  :  R  N  R  E  T  G  A  L  C  E  K  Y  A  H  D  E  *   : *  C  S  K  L  H  C  Q  L  Q  N  *  V  D  P  Q  G  C  C  T  K  A  C  T  *  I  V  C  A  P  G  L  S  L  P  Y  A  *  S  R  E  C  *  S  S  E  L  S  *   : G  S  L  L  S  M  Q  N  F  C  E  I  Q  V  Q  F  W  H  F  M  *  R  V  K  F  </second_frame>
            <third_frame>   L  F  S  T  K  L  S  Q  S  R  G  F  L  H  S  F  H  K  R  V  S  F  S  S  S  F  L  S  V  R  C  F  S  A  V  S  Q  K  P  L  R :   Y  A  V  L  G  A  G  F  A  G  L  S  V  V  W  H  L  L  Q  :  Q  T  S  E  E  S  N  F  C  I  D  I  Y  D  E  V  G  I  G  G  G  A  S  G  M  S  G  G  L  L  H  P  Y  S  P  K   : V  K  L  L  W  R  G  E  E  C  W  K  E  S  L  K  L  L  N  V  A  E  D  A  R  S  S  K  S  L  D  M  V  M  P  K  T  G  L  K  E  G  D  F  I  V  R  R  S :   G  I  V  R  P  V  L  S  A  K  N  M  R  M  M  N  D  :  N  A  Q  N  C  I  A  S  C  R  I  E  S  I  H  K  D  A  A  Q  K  L  V  P  E  L  C  V  P  L  D  L  A  F  H  M  P  E  A  V  N  V  N  P  Q  N  Y  L  E  :  A  L  Y  L  A  C  K  T  F  V  K  S  K  C  S  F  G  I  S  C  K  E  L  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37054" stop="37175"/>
                    <exon start="37265" stop="37322"/>
                    <exon start="38300" stop="38408"/>
                    <exon start="38567" stop="38711"/>
                    <exon start="39442" stop="39493"/>
                    <exon start="39579" stop="39725"/>
                    <exon start="39820" stop="39894"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFSTKLSQSRGFLHSFHKRVSFSSSFLSVRCFSAVSQKPLRYAVLGAGFAGLSVVWHLLQQTSEESNFCIDIYDEVGIGGGASGMSGGLLHPYSPKVKLLWRGEECWKESLKLLNVAEDARSSKSLDMVMPKTGLKEGDFIVRRSGIVRPVLSAKNMRMMNDNAQNCIASCRIESIHKDAAQKLVPELCVPLDLAFHMPEAVNVNPQNYLEALYLACKTFVKSKCSFGISCKELNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="42757" PGL_stop="45940"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42757" e_stop="43719"/>
            <exon e_start="45902" e_stop="45940"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.667" e_score="0.991"/>
          <exon-only e_score="0.564"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="42757" e_stop="43719" e_length="963"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.667">
            <gDNA_intron_boundary i_start="43720" i_stop="45901" i_length="2182"/>
          </intron>
          <exon e_serial="2" e_score="0.564">
            <gDNA_exon_boundary e_start="45902" e_stop="45940" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42757" stop="43123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42758" stop="43265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43046" stop="43719"/>
              <exon start="45902" stop="45940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541081" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATGAATACATCCCACCCATGGCTTAGAGGCTTTGGTCCAGCAGCATTAGTACAACAATTGTTGTGTAATAGGGGTGCATGTTGCCAGTTTGAAATATCCCTTTTGTTTAGGGATAAGAGTGCAACAGTTGGTGAGTACGATGCATGCCACAGATTTGAATTATGAAGCTTGGTATCTAAGCAGAGAAAGACAGATGGCCGGTGCAACATAGAGATTCAAACAAAAGTGAAATCTCTCTACTGTTTTTTGCTGATAATGTTCACAACTTCTATAGCCAAGTGAGACCATATGTAAAGTTGGAAAAATTGGTATAAAAGTAACCTATTTGGAGTTAGAGAAAAGTTGTTTTTGATATAATTTGCAAAAAGAGAACAATGAAAGTGAAGGTAAAATGTTGAAGATAATATGACAAACTAAAAAAGGAACAATCAGTATCAAAATTATACAATGAAGTGCAAGAAATATTAAAAGGGATGGAACAAACAGAAACTTCATGGAAATTTGATTATCCATCATCATACCTTCGCATCGGAACACCTGTACATCTCATTTTCACATATTCGAACTATATTCGAACTATCTTGACTGAGAAAATTATATTAAAAAGAATCTAAAAATTGTAAATGCAAATCTCTGTGTCCTAAAGAAATTGTTATTTTATACTTTCAACAAGATTAAAGTTGATTTTTTTAATGAAGATACTGTTCCTCTGGTAAAGATGGGAGTATTTTAGTTCAAGTGTTGGGTACTATATAAGCAAAACCTTAGGGCAATGGACAAAGCAAAAAGCTCAAAAGGGAAAGAATGAGGCTTAAAGAGAGTTTAAGGATTTCTCATTGAAAGGGTGGTTGCCACTCTCTACATCAGCCGATGATTTCTCCATTTATCTAAGAATTCCAACAACCTTTTTCTTATCAATTTTGAACAGAGGAAATATACAATTATCAGCTTTGTTTGAA : GAAAATGTTATCGAGAGTTGAGATACAAAAAAACAAAAA</gDNA_template>
            <first_frame> F  Y  E  Y  I  P  P  M  A  *  R  L  W  S  S  S  I  S  T  T  I  V  V  *  *  G  C  M  L  P  V  *  N  I  P  F  V  *  G  *  E  C  N  S  W  *  V  R  C  M  P  Q  I  *  I  M  K  L  G  I  *  A  E  K  D  R  W  P  V  Q  H  R  D  S  N  K  S  E  I  S  L  L  F  F  A  D  N  V  H  N  F  Y  S  Q  V  R  P  Y  V  K  L  E  K  L  V  *  K  *  P  I  W  S  *  R  K  V  V  F  D  I  I  C  K  K  R  T  M  K  V  K  V  K  C  *  R  *  Y  D  K  L  K  K  E  Q  S  V  S  K  L  Y  N  E  V  Q  E  I  L  K  G  M  E  Q  T  E  T  S  W  K  F  D  Y  P  S  S  Y  L  R  I  G  T  P  V  H  L  I  F  T  Y  S  N  Y  I  R  T  I  L  T  E  K  I  I  L  K  R  I  *  K  L  *  M  Q  I  S  V  S  *  R  N  C  Y  F  I  L  S  T  R  L  K  L  I  F  L  M  K  I  L  F  L  W  *  R  W  E  Y  F  S  S  S  V  G  Y  Y  I  S  K  T  L  G  Q  W  T  K  Q  K  A  Q  K  G  K  N  E  A  *  R  E  F  K  D  F  S  L  K  G  W  L  P  L  S  T  S  A  D  D  F  S  I  Y  L  R  I  P  T  T  F  F  L  S  I  L  N  R  G  N  I  Q  L  S  A  L  F  E  :  E  N  V  I  E  S  *  D  T  K  K  Q  K </first_frame>
            <second_frame>  F  M  N  T  S  H  P  W  L  R  G  F  G  P  A  A  L  V  Q  Q  L  L  C  N  R  G  A  C  C  Q  F  E  I  S  L  L  F  R  D  K  S  A  T  V  G  E  Y  D  A  C  H  R  F  E  L  *  S  L  V  S  K  Q  R  K  T  D  G  R  C  N  I  E  I  Q  T  K  V  K  S  L  Y  C  F  L  L  I  M  F  T  T  S  I  A  K  *  D  H  M  *  S  W  K  N  W  Y  K  S  N  L  F  G  V  R  E  K  L  F  L  I  *  F  A  K  R  E  Q  *  K  *  R  *  N  V  E  D  N  M  T  N  *  K  R  N  N  Q  Y  Q  N  Y  T  M  K  C  K  K  Y  *  K  G  W  N  K  Q  K  L  H  G  N  L  I  I  H  H  H  T  F  A  S  E  H  L  Y  I  S  F  S  H  I  R  T  I  F  E  L  S  *  L  R  K  L  Y  *  K  E  S  K  N  C  K  C  K  S  L  C  P  K  E  I  V  I  L  Y  F  Q  Q  D  *  S  *  F  F  *  *  R  Y  C  S  S  G  K  D  G  S  I  L  V  Q  V  L  G  T  I  *  A  K  P  *  G  N  G  Q  S  K  K  L  K  R  E  R  M  R  L  K  E  S  L  R  I  S  H  *  K  G  G  C  H  S  L  H  Q  P  M  I  S  P  F  I  *  E  F  Q  Q  P  F  S  Y  Q  F  *  T  E  E  I  Y  N  Y  Q  L  C  L  K :   K  M  L  S  R  V  E  I  Q  K  N  K   </second_frame>
            <third_frame>   L  *  I  H  P  T  H  G  L  E  A  L  V  Q  Q  H  *  Y  N  N  C  C  V  I  G  V  H  V  A  S  L  K  Y  P  F  C  L  G  I  R  V  Q  Q  L  V  S  T  M  H  A  T  D  L  N  Y  E  A  W  Y  L  S  R  E  R  Q  M  A  G  A  T  *  R  F  K  Q  K  *  N  L  S  T  V  F  C  *  *  C  S  Q  L  L  *  P  S  E  T  I  C  K  V  G  K  I  G  I  K  V  T  Y  L  E  L  E  K  S  C  F  *  Y  N  L  Q  K  E  N  N  E  S  E  G  K  M  L  K  I  I  *  Q  T  K  K  G  T  I  S  I  K  I  I  Q  *  S  A  R  N  I  K  R  D  G  T  N  R  N  F  M  E  I  *  L  S  I  I  I  P  S  H  R  N  T  C  T  S  H  F  H  I  F  E  L  Y  S  N  Y  L  D  *  E  N  Y  I  K  K  N  L  K  I  V  N  A  N  L  C  V  L  K  K  L  L  F  Y  T  F  N  K  I  K  V  D  F  F  N  E  D  T  V  P  L  V  K  M  G  V  F  *  F  K  C  W  V  L  Y  K  Q  N  L  R  A  M  D  K  A  K  S  S  K  G  K  E  *  G  L  K  R  V  *  G  F  L  I  E  R  V  V  A  T  L  Y  I  S  R  *  F  L  H  L  S  K  N  S  N  N  L  F  L  I  N  F  E  Q  R  K  Y  T  I  I  S  F  V  *   : R  K  C  Y  R  E  L  R  Y  K  K  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43165" stop="43374"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YDKLKKEQSVSKLYNEVQEILKGMEQTETSWKFDYPSSYLRIGTPVHLIFTYSNYIRTILTEKIILKRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43561" e_stop="44078"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43561" e_stop="44078" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43561" stop="44078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43565" stop="43830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273325" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAATGAGGCTTAAAGAGAGTTTAAGGATTTCTCATTGAAAGGGTGGTTGCCACTCTCTACATCAGCCGATGATTTCTCCATTTATCTAAGAATTCCAACAACCTTTTTCTTATCAATTTTGAACAGAGGAAATATACAATTATCAGCTTTGTTTGAAATGGGTTTCTATGGCCTTTCAACTCTTTTTCCCTTTTTATTTCTTTATACTTATGCTTATGCCTGAGCATTCAGTGTTGCCGGTGGGGGTGATTATAATTGGTGTCTTTATAGAGGCGATGATGATTTTTGTCCCTTTTTATTCCCTTTTGAGCTGATTAATTGAGCATTTGAGGTTATCTGATCCGTAACTTGGCGGGGCATACTTTTTTTTGCAGCCATGGCGTGGTTGGACTCTCTTTTTGCTCGAGCTTAACACAGATCTGAGCCTCAATTTGCTGGTCTCTTCATCAATTTCAATTGAGGGAGTATTATTAACAGCTTCAGGGTACTATAAGCTATTATTCATAAATTAAAAAT</gDNA_template>
            <first_frame> K  N  E  A  *  R  E  F  K  D  F  S  L  K  G  W  L  P  L  S  T  S  A  D  D  F  S  I  Y  L  R  I  P  T  T  F  F  L  S  I  L  N  R  G  N  I  Q  L  S  A  L  F  E  M  G  F  Y  G  L  S  T  L  F  P  F  L  F  L  Y  T  Y  A  Y  A  *  A  F  S  V  A  G  G  G  D  Y  N  W  C  L  Y  R  G  D  D  D  F  C  P  F  L  F  P  F  E  L  I  N  *  A  F  E  V  I  *  S  V  T  W  R  G  I  L  F  F  A  A  M  A  W  L  D  S  L  F  A  R  A  *  H  R  S  E  P  Q  F  A  G  L  F  I  N  F  N  *  G  S  I  I  N  S  F  R  V  L  *  A  I  I  H  K  L  K   </first_frame>
            <second_frame>  R  M  R  L  K  E  S  L  R  I  S  H  *  K  G  G  C  H  S  L  H  Q  P  M  I  S  P  F  I  *  E  F  Q  Q  P  F  S  Y  Q  F  *  T  E  E  I  Y  N  Y  Q  L  C  L  K  W  V  S  M  A  F  Q  L  F  F  P  F  Y  F  F  I  L  M  L  M  P  E  H  S  V  L  P  V  G  V  I  I  I  G  V  F  I  E  A  M  M  I  F  V  P  F  Y  S  L  L  S  *  L  I  E  H  L  R  L  S  D  P  *  L  G  G  A  Y  F  F  L  Q  P  W  R  G  W  T  L  F  L  L  E  L  N  T  D  L  S  L  N  L  L  V  S  S  S  I  S  I  E  G  V  L  L  T  A  S  G  Y  Y  K  L  L  F  I  N  *  K  </second_frame>
            <third_frame>   E  *  G  L  K  R  V  *  G  F  L  I  E  R  V  V  A  T  L  Y  I  S  R  *  F  L  H  L  S  K  N  S  N  N  L  F  L  I  N  F  E  Q  R  K  Y  T  I  I  S  F  V  *  N  G  F  L  W  P  F  N  S  F  S  L  F  I  S  L  Y  L  C  L  C  L  S  I  Q  C  C  R  W  G  *  L  *  L  V  S  L  *  R  R  *  *  F  L  S  L  F  I  P  F  *  A  D  *  L  S  I  *  G  Y  L  I  R  N  L  A  G  H  T  F  F  C  S  H  G  V  V  G  L  S  F  C  S  S  L  T  Q  I  *  A  S  I  C  W  S  L  H  Q  F  Q  L  R  E  Y  Y  *  Q  L  Q  G  T  I  S  Y  Y  S  *  I  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43576" stop="43785"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REFKDFSLKGWLPLSTSADDFSIYLRIPTTFFLSILNRGNIQLSALFEMGFYGLSTLFPFLFLYTYAYA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="43561" e_stop="43872"/>
            <exon e_start="45710" e_stop="45858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="43561" e_stop="43872" e_length="312"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43873" i_stop="45709" i_length="1837"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45710" e_stop="45858" e_length="149"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43561" stop="43872"/>
              <exon start="45710" stop="45858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43565" stop="43830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273325" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAATGAGGCTTAAAGAGAGTTTAAGGATTTCTCATTGAAAGGGTGGTTGCCACTCTCTACATCAGCCGATGATTTCTCCATTTATCTAAGAATTCCAACAACCTTTTTCTTATCAATTTTGAACAGAGGAAATATACAATTATCAGCTTTGTTTGAAATGGGTTTCTATGGCCTTTCAACTCTTTTTCCCTTTTTATTTCTTTATACTTATGCTTATGCCTGAGCATTCAGTGTTGCCGGTGGGGGTGATTATAATTGGTGTCTTTATAGAGGCGATGATGATTTTTGTCCCTTTTTATTCCCTTTTGAG : CTGATTAATCGGGCATTTGAGATTATCCAACCCATATCTTGGAGGGTCATGCTCCCAGATTTTCTGGTGGATTTTGCAGCCATGGCATGGTTGGAATCTCTTGTTGCCTGAGCTTAACACAAATCTGAGCCTCAATTTTTCTCTGTTCA</gDNA_template>
            <first_frame> K  N  E  A  *  R  E  F  K  D  F  S  L  K  G  W  L  P  L  S  T  S  A  D  D  F  S  I  Y  L  R  I  P  T  T  F  F  L  S  I  L  N  R  G  N  I  Q  L  S  A  L  F  E  M  G  F  Y  G  L  S  T  L  F  P  F  L  F  L  Y  T  Y  A  Y  A  *  A  F  S  V  A  G  G  G  D  Y  N  W  C  L  Y  R  G  D  D  D  F  C  P  F  L  F  P  F  E  :  L  I  N  R  A  F  E  I  I  Q  P  I  S  W  R  V  M  L  P  D  F  L  V  D  F  A  A  M  A  W  L  E  S  L  V  A  *  A  *  H  K  S  E  P  Q  F  F  S  V   </first_frame>
            <second_frame>  R  M  R  L  K  E  S  L  R  I  S  H  *  K  G  G  C  H  S  L  H  Q  P  M  I  S  P  F  I  *  E  F  Q  Q  P  F  S  Y  Q  F  *  T  E  E  I  Y  N  Y  Q  L  C  L  K  W  V  S  M  A  F  Q  L  F  F  P  F  Y  F  F  I  L  M  L  M  P  E  H  S  V  L  P  V  G  V  I  I  I  G  V  F  I  E  A  M  M  I  F  V  P  F  Y  S  L  L  S :   *  L  I  G  H  L  R  L  S  N  P  Y  L  G  G  S  C  S  Q  I  F  W  W  I  L  Q  P  W  H  G  W  N  L  L  L  P  E  L  N  T  N  L  S  L  N  F  S  L  F  </second_frame>
            <third_frame>   E  *  G  L  K  R  V  *  G  F  L  I  E  R  V  V  A  T  L  Y  I  S  R  *  F  L  H  L  S  K  N  S  N  N  L  F  L  I  N  F  E  Q  R  K  Y  T  I  I  S  F  V  *  N  G  F  L  W  P  F  N  S  F  S  L  F  I  S  L  Y  L  C  L  C  L  S  I  Q  C  C  R  W  G  *  L  *  L  V  S  L  *  R  R  *  *  F  L  S  L  F  I  P  F  *   : A  D  *  S  G  I  *  D  Y  P  T  H  I  L  E  G  H  A  P  R  F  S  G  G  F  C  S  H  G  M  V  G  I  S  C  C  L  S  L  T  Q  I  *  A  S  I  F  L  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43576" stop="43785"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REFKDFSLKGWLPLSTSADDFSIYLRIPTTFFLSILNRGNIQLSALFEMGFYGLSTLFPFLFLYTYAYA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43786" stop="43872"/>
                    <exon start="45710" stop="45820"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFSVAGGGDYNWCLYRGDDDFCPFLFPFELINRAFEIIQPISWRVMLPDFLVDFAAMAWLESLVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="44125" PGL_stop="43549"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44125" e_stop="43549"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="44125" e_stop="43549" e_length="577"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44125" stop="43549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202701" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAACCACCCTTTCAACATAAAAATCCTCAAAATCCATGTTAGCCTCATTTTTAATTTATGAATAATAGCTTATAGTACCCTGAAGCTGTTAATAATACTCCCTCAATTGAAATTGATGAAGAGACCAGCAAATTGAGGCTCAGATCTGTGTTAAGCTCGAGCAAAAAGAGAGTCCAACCACGCCATGGCTGCAAAAAAAAGTATGCCCCGCCAAGTTACGGATCAGATAACCTCAAATGCTCAATTAATCAGCTCAAAAGGGAATAAAAAGGGACAAAAATCATCATCGCCTCTATAAAGACACCAATTATAATCACCCCCACCGGCAACACTGAATGCTCAGGCATAAGCATAAGTATAAAGAAATAAAAAGGGAAAAAGAGTTGAAAGGCCATAGAAACCCATTTCAAACAAAGCTGATAATTGTATATTTCCTCTGTTCAAAATTGATAAGAAAAAGGTTGTTGGAATTCTTAGATAAATGGAGAAATCATCGGCTGATGTAGAGAGTGGCAACCACCCTTTCAATGAGAAATCCTTAAACTCTCTTTAAGCCTCATTCTTTCCCTTTTGAGC</gDNA_template>
            <first_frame> S  T  T  L  S  T  *  K  S  S  K  S  M  L  A  S  F  L  I  Y  E  *  *  L  I  V  P  *  S  C  *  *  Y  S  L  N  *  N  *  *  R  D  Q  Q  I  E  A  Q  I  C  V  K  L  E  Q  K  E  S  P  T  T  P  W  L  Q  K  K  V  C  P  A  K  L  R  I  R  *  P  Q  M  L  N  *  S  A  Q  K  G  I  K  R  D  K  N  H  H  R  L  Y  K  D  T  N  Y  N  H  P  H  R  Q  H  *  M  L  R  H  K  H  K  Y  K  E  I  K  R  E  K  E  L  K  G  H  R  N  P  F  Q  T  K  L  I  I  V  Y  F  L  C  S  K  L  I  R  K  R  L  L  E  F  L  D  K  W  R  N  H  R  L  M  *  R  V  A  T  T  L  S  M  R  N  P  *  T  L  F  K  P  H  S  F  P  F  E  </first_frame>
            <second_frame>  Q  P  P  F  Q  H  K  N  P  Q  N  P  C  *  P  H  F  *  F  M  N  N  S  L  *  Y  P  E  A  V  N  N  T  P  S  I  E  I  D  E  E  T  S  K  L  R  L  R  S  V  L  S  S  S  K  K  R  V  Q  P  R  H  G  C  K  K  K  Y  A  P  P  S  Y  G  S  D  N  L  K  C  S  I  N  Q  L  K  R  E  *  K  G  T  K  I  I  I  A  S  I  K  T  P  I  I  I  T  P  T  G  N  T  E  C  S  G  I  S  I  S  I  K  K  *  K  G  K  K  S  *  K  A  I  E  T  H  F  K  Q  S  *  *  L  Y  I  S  S  V  Q  N  *  *  E  K  G  C  W  N  S  *  I  N  G  E  I  I  G  *  C  R  E  W  Q  P  P  F  Q  *  E  I  L  K  L  S  L  S  L  I  L  S  L  L  S </second_frame>
            <third_frame>   N  H  P  F  N  I  K  I  L  K  I  H  V  S  L  I  F  N  L  *  I  I  A  Y  S  T  L  K  L  L  I  I  L  P  Q  L  K  L  M  K  R  P  A  N  *  G  S  D  L  C  *  A  R  A  K  R  E  S  N  H  A  M  A  A  K  K  S  M  P  R  Q  V  T  D  Q  I  T  S  N  A  Q  L  I  S  S  K  G  N  K  K  G  Q  K  S  S  S  P  L  *  R  H  Q  L  *  S  P  P  P  A  T  L  N  A  Q  A  *  A  *  V  *  R  N  K  K  G  K  R  V  E  R  P  *  K  P  I  S  N  K  A  D  N  C  I  F  P  L  F  K  I  D  K  K  K  V  V  G  I  L  R  *  M  E  K  S  S  A  D  V  E  S  G  N  H  P  F  N  E  K  S  L  N  S  L  *  A  S  F  F  P  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0002D20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="51576" PGL_stop="52300"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51576" e_stop="52300"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="51576" e_stop="52300" e_length="725"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51576" stop="52300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51576" stop="51862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51581" stop="52247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51581" stop="52040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51581" stop="51989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAGTTGGGACTTGAGATCAGCTATATTTCAATATTCTATATTTTGAGTTCTCTAATGCTAGGTGAAATGCGTGTAGTTCCAGTTTAATAAAGAAAGAGCTGTATTCTAAAAATGAAATATATCAAGTGTACCATTTAAGTTGATTTACCAGTATTTACTAAAAATAATAATCTCAGAATGTCTTAAGTTAACAATCACCTTCTAGAATAATTTTGTATTCTAGGATGTGTATTATTAAAAGAAAGAAATTACCATTAAAATGAAAAAATAATTTAAACAGCCCACTGTATTATATTGAACAGAATTCTAGAACCTGCCATTGAACAATCTGCCAAAAAAGGTCAATCATTACACTTGTAAGGTGCTTGAATGTCCACGTCTATATCCACAAATATTTCACAGCACACAATATCTCCTCATCCCAATAAACCTTATCAAGAATTCAATCTCTGAAAGAACAAAAAAACTTAAAATCCTGTATTGTTTGTTTGTTTGATTTTAGTTTGAAATAAAATCTAAAAAAGCAAAAAAAGTTGTCAATTTTGTGAATTTAAAATATGTAAAATATTATTATCTACTCTCATAATTTTAAAAATATTACATGGAAAGTATTATCTTTTAAGTAAATTATTTTTGTTAGGAGTAAGATAAGGAAAAAATGGGGAATTAAATTTTAACGAATAAGATAAAAGCTCAAATAATCAATCAACTGACACCAAAAAAA</gDNA_template>
            <first_frame> I  V  G  T  *  D  Q  L  Y  F  N  I  L  Y  F  E  F  S  N  A  R  *  N  A  C  S  S  S  L  I  K  K  E  L  Y  S  K  N  E  I  Y  Q  V  Y  H  L  S  *  F  T  S  I  Y  *  K  *  *  S  Q  N  V  L  S  *  Q  S  P  S  R  I  I  L  Y  S  R  M  C  I  I  K  R  K  K  L  P  L  K  *  K  N  N  L  N  S  P  L  Y  Y  I  E  Q  N  S  R  T  C  H  *  T  I  C  Q  K  R  S  I  I  T  L  V  R  C  L  N  V  H  V  Y  I  H  K  Y  F  T  A  H  N  I  S  S  S  Q  *  T  L  S  R  I  Q  S  L  K  E  Q  K  N  L  K  S  C  I  V  C  L  F  D  F  S  L  K  *  N  L  K  K  Q  K  K  L  S  I  L  *  I  *  N  M  *  N  I  I  I  Y  S  H  N  F  K  N  I  T  W  K  V  L  S  F  K  *  I  I  F  V  R  S  K  I  R  K  K  W  G  I  K  F  *  R  I  R  *  K  L  K  *  S  I  N  *  H  Q  K   </first_frame>
            <second_frame>  *  L  G  L  E  I  S  Y  I  S  I  F  Y  I  L  S  S  L  M  L  G  E  M  R  V  V  P  V  *  *  R  K  S  C  I  L  K  M  K  Y  I  K  C  T  I  *  V  D  L  P  V  F  T  K  N  N  N  L  R  M  S  *  V  N  N  H  L  L  E  *  F  C  I  L  G  C  V  L  L  K  E  R  N  Y  H  *  N  E  K  I  I  *  T  A  H  C  I  I  L  N  R  I  L  E  P  A  I  E  Q  S  A  K  K  G  Q  S  L  H  L  *  G  A  *  M  S  T  S  I  S  T  N  I  S  Q  H  T  I  S  P  H  P  N  K  P  Y  Q  E  F  N  L  *  K  N  K  K  T  *  N  P  V  L  F  V  C  L  I  L  V  *  N  K  I  *  K  S  K  K  S  C  Q  F  C  E  F  K  I  C  K  I  L  L  S  T  L  I  I  L  K  I  L  H  G  K  Y  Y  L  L  S  K  L  F  L  L  G  V  R  *  G  K  N  G  E  L  N  F  N  E  *  D  K  S  S  N  N  Q  S  T  D  T  K  K  </second_frame>
            <third_frame>   S  W  D  L  R  S  A  I  F  Q  Y  S  I  F  *  V  L  *  C  *  V  K  C  V  *  F  Q  F  N  K  E  R  A  V  F  *  K  *  N  I  S  S  V  P  F  K  L  I  Y  Q  Y  L  L  K  I  I  I  S  E  C  L  K  L  T  I  T  F  *  N  N  F  V  F  *  D  V  Y  Y  *  K  K  E  I  T  I  K  M  K  K  *  F  K  Q  P  T  V  L  Y  *  T  E  F  *  N  L  P  L  N  N  L  P  K  K  V  N  H  Y  T  C  K  V  L  E  C  P  R  L  Y  P  Q  I  F  H  S  T  Q  Y  L  L  I  P  I  N  L  I  K  N  S  I  S  E  R  T  K  K  L  K  I  L  Y  C  L  F  V  *  F  *  F  E  I  K  S  K  K  A  K  K  V  V  N  F  V  N  L  K  Y  V  K  Y  Y  Y  L  L  S  *  F  *  K  Y  Y  M  E  S  I  I  F  *  V  N  Y  F  C  *  E  *  D  K  E  K  M  G  N  *  I  L  T  N  K  I  K  A  Q  I  I  N  Q  L  T  P  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0002D20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="52495" PGL_stop="61980"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52495" e_stop="52914"/>
            <exon e_start="53174" e_stop="53620"/>
            <exon e_start="61958" e_stop="61980"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.954" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.696"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52495" e_stop="52914" e_length="420"/>
          </exon>
          <intron i_serial="1" don_prob="0.954" acc_prob="0.976">
            <gDNA_intron_boundary i_start="52915" i_stop="53173" i_length="259"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="53174" e_stop="53620" e_length="447"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53621" i_stop="61957" i_length="8337"/>
          </intron>
          <exon e_serial="3" e_score="0.696">
            <gDNA_exon_boundary e_start="61958" e_stop="61980" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52495" stop="52914"/>
              <exon start="53174" stop="53433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52498" stop="52914"/>
              <exon start="53174" stop="53461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52499" stop="52914"/>
              <exon start="53174" stop="53467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52499" stop="52914"/>
              <exon start="53174" stop="53284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52499" stop="52914"/>
              <exon start="53174" stop="53262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52499" stop="52914"/>
              <exon start="53174" stop="53261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52500" stop="52914"/>
              <exon start="53174" stop="53340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52500" stop="52914"/>
              <exon start="53174" stop="53182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52503" stop="52914"/>
              <exon start="53174" stop="53419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52504" stop="52914"/>
              <exon start="53174" stop="53285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52504" stop="52914"/>
              <exon start="53174" stop="53211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52511" stop="52914"/>
              <exon start="53174" stop="53386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52518" stop="52914"/>
              <exon start="53174" stop="53264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52538" stop="52835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52584" stop="52821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52763" stop="52914"/>
              <exon start="53174" stop="53620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288813" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52836" stop="52914"/>
              <exon start="53174" stop="53620"/>
              <exon start="61958" stop="61980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368909" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52841" stop="52914"/>
              <exon start="53174" stop="53620"/>
              <exon start="61958" stop="61980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259729" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGAGACCAAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGG : ATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTGGTGGATCAAATCAATATTGGGAAAATAGTCAATCTTGAATATGGTTTTTTTAAACCAATAGCTAAATAAATTTTACAATATAAATTATGAAAAGTTGTCTTGTAAAGAAGAGTTTATTATTGTTTATATTTCAAATGTTGTAATTTTCTAAGGTGTGTCCTTCTTGTGTTGGTAGCAAGTATAGCATGTGTAATATTGTGTTGTTGCAACTTGTAAGAGAGTTTGTTGTTAATTTTACAATATAAATTATGAAATGTTGAATATATATAGTTCGTTTCGTTCAAATGAA : AGAACAAAAAGAATTCAAGCTTA</gDNA_template>
            <first_frame> K  E  T  K  T  L  I  L  H  F  E  I  L  Q  K  N  M  T  T  K  E  M  E  V  V  K  N  L  D  V  E  K  Y  M  G  R  W  Y  E  I  A  S  F  P  S  R  N  Q  P  K  D  G  V  N  T  R  A  T  Y  T  L  N  Q  D  G  T  V  H  V  L  N  E  T  W  S  G  G  K  R  G  S  I  E  G  T  A  Y  K  A  D  P  K  S  D  E  A  K  L  K  V  K  F  Y  I  P  P  F  L  P  I  I  P  I  V  G  D  Y  W  V  L  Y  I  D  D  D  Y  Q  Y  A  L  I  G  Q  P  S  K  K  Y  L  W  :  I  L  C  R  Q  P  H  L  D  E  E  I  Y  N  Q  L  V  E  K  A  K  E  V  G  Y  D  V  S  K  L  H  K  T  P  Q  A  D  P  P  P  D  G  E  D  A  P  K  D  T  K  G  F  W  W  I  K  S  I  L  G  K  *  S  I  L  N  M  V  F  L  N  Q  *  L  N  K  F  Y  N  I  N  Y  E  K  L  S  C  K  E  E  F  I  I  V  Y  I  S  N  V  V  I  F  *  G  V  S  F  L  C  W  *  Q  V  *  H  V  *  Y  C  V  V  A  T  C  K  R  V  C  C  *  F  Y  N  I  N  Y  E  M  L  N  I  Y  S  S  F  R  S  N  E  :  R  T  K  R  I  Q  A   </first_frame>
            <second_frame>  K  R  P  K  P  L  Y  Y  T  L  K  F  C  K  K  I  *  P  Q  K  R  W  K  *  *  R  I  W  M  L  K  N  T  W  E  D  G  M  K  L  P  H  F  H  Q  E  I  N  Q  K  M  V  *  T  Q  E  P  L  T  L  *  T  K  M  E  Q  Y  M  C  *  M  K  H  G  V  V  V  K  E  V  Q  L  K  G  L  P  I  K  L  I  Q  K  V  M  K  Q  N  L  K  *  N  F  I  S  H  L  S  C  Q  L  F  L  L  L  V  I  I  G  F  Y  I  L  M  M  I  I  N  M  L  *  L  V  S  L  V  R  N  I  F  G :   Y  Y  V  G  N  H  I  L  M  K  K  Y  T  T  N  L  L  R  R  Q  K  K  *  D  M  M  *  A  N  F  T  R  H  L  K  L  I  L  H  Q  M  V  K  M  P  Q  R  T  L  K  D  F  G  G  S  N  Q  Y  W  E  N  S  Q  S  *  I  W  F  F  *  T  N  S  *  I  N  F  T  I  *  I  M  K  S  C  L  V  K  K  S  L  L  L  F  I  F  Q  M  L  *  F  S  K  V  C  P  S  C  V  G  S  K  Y  S  M  C  N  I  V  L  L  Q  L  V  R  E  F  V  V  N  F  T  I  *  I  M  K  C  *  I  Y  I  V  R  F  V  Q  M  K :   E  Q  K  E  F  K  L  </second_frame>
            <third_frame>   R  D  Q  N  P  Y  T  T  L  *  N  F  A  K  K  Y  D  H  K  R  D  G  S  S  E  E  F  G  C  *  K  I  H  G  K  M  V  *  N  C  L  I  S  I  K  K  S  T  K  R  W  C  K  H  K  S  H  L  H  F  K  P  R  W  N  S  T  C  V  K  *  N  M  E  W  W  *  K  R  F  N  *  R  D  C  L  *  S  *  S  K  K  *  *  S  K  T  *  S  E  I  L  Y  P  T  F  L  A  N  Y  S  Y  C  W  *  L  L  G  F  I  Y  *  *  *  L  S  I  C  F  D  W  S  A  *  *  E  I  S  L   : D  I  M  *  A  T  T  S  *  *  R  N  I  Q  P  T  C  *  E  G  K  R  S  R  I  *  C  E  Q  T  S  Q  D  T  S  S  *  S  S  T  R  W  *  R  C  P  K  G  H  *  R  I  L  V  D  Q  I  N  I  G  K  I  V  N  L  E  Y  G  F  F  K  P  I  A  K  *  I  L  Q  Y  K  L  *  K  V  V  L  *  R  R  V  Y  Y  C  L  Y  F  K  C  C  N  F  L  R  C  V  L  L  V  L  V  A  S  I  A  C  V  I  L  C  C  C  N  L  *  E  S  L  L  L  I  L  Q  Y  K  L  *  N  V  E  Y  I  *  F  V  S  F  K  *   : K  N  K  K  N  S  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52495" stop="52914"/>
                    <exon start="53174" stop="53359"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KETKTLILHFEILQKNMTTKEMEVVKNLDVEKYMGRWYEIASFPSRNQPKDGVNTRATYTLNQDGTVHVLNETWSGGKRGSIEGTAYKADPKSDEAKLKVKFYIPPFLPIIPIVGDYWVLYIDDDYQYALIGQPSKKYLWILCRQPHLDEEIYNQLVEKAKEVGYDVSKLHKTPQADPPPDGEDAPKDTKGFWWIKSILGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52495" e_stop="52914"/>
            <exon e_start="53174" e_stop="53595"/>
            <exon e_start="61195" e_stop="61235"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.954" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.936"/>
          <exon-only e_score="0.561"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52495" e_stop="52914" e_length="420"/>
          </exon>
          <intron i_serial="1" don_prob="0.954" acc_prob="0.976">
            <gDNA_intron_boundary i_start="52915" i_stop="53173" i_length="259"/>
          </intron>
          <exon e_serial="2" e_score="0.936">
            <gDNA_exon_boundary e_start="53174" e_stop="53595" e_length="422"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53596" i_stop="61194" i_length="7599"/>
          </intron>
          <exon e_serial="3" e_score="0.561">
            <gDNA_exon_boundary e_start="61195" e_stop="61235" e_length="41"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52495" stop="52914"/>
              <exon start="53174" stop="53433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52498" stop="52914"/>
              <exon start="53174" stop="53461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52499" stop="52914"/>
              <exon start="53174" stop="53467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52499" stop="52914"/>
              <exon start="53174" stop="53284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52499" stop="52914"/>
              <exon start="53174" stop="53262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52499" stop="52914"/>
              <exon start="53174" stop="53261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52500" stop="52914"/>
              <exon start="53174" stop="53340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52500" stop="52914"/>
              <exon start="53174" stop="53182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52503" stop="52914"/>
              <exon start="53174" stop="53419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52504" stop="52914"/>
              <exon start="53174" stop="53285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52504" stop="52914"/>
              <exon start="53174" stop="53211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52511" stop="52914"/>
              <exon start="53174" stop="53386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52518" stop="52914"/>
              <exon start="53174" stop="53264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52538" stop="52835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52584" stop="52821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52718" stop="52914"/>
              <exon start="53174" stop="53595"/>
              <exon start="61195" stop="61235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390872" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGAGACCAAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGG : ATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTGGTGGATCAAATCAATATTGGGAAAATAGTCAATCTTGAATATGGTTTTTTTAAACCAATAGCTAAATAAATTTTACAATATAAATTATGAAAAGTTGTCTTGTAAAGAAGAGTTTATTATTGTTTATATTTCAAATGTTGTAATTTTCTAAGGTGTGTCCTTCTTGTGTTGGTAGCAAGTATAGCATGTGTAATATTGTGTTGTTGCAACTTGTAAGAGAGTTTGTTGTTAATTTTACAATATAAATTATGAAATGTTGAATAT : AAAATTCGTACAATACCATAAAACTTAAAAATTTTAAAATA</gDNA_template>
            <first_frame> K  E  T  K  T  L  I  L  H  F  E  I  L  Q  K  N  M  T  T  K  E  M  E  V  V  K  N  L  D  V  E  K  Y  M  G  R  W  Y  E  I  A  S  F  P  S  R  N  Q  P  K  D  G  V  N  T  R  A  T  Y  T  L  N  Q  D  G  T  V  H  V  L  N  E  T  W  S  G  G  K  R  G  S  I  E  G  T  A  Y  K  A  D  P  K  S  D  E  A  K  L  K  V  K  F  Y  I  P  P  F  L  P  I  I  P  I  V  G  D  Y  W  V  L  Y  I  D  D  D  Y  Q  Y  A  L  I  G  Q  P  S  K  K  Y  L  W  :  I  L  C  R  Q  P  H  L  D  E  E  I  Y  N  Q  L  V  E  K  A  K  E  V  G  Y  D  V  S  K  L  H  K  T  P  Q  A  D  P  P  P  D  G  E  D  A  P  K  D  T  K  G  F  W  W  I  K  S  I  L  G  K  *  S  I  L  N  M  V  F  L  N  Q  *  L  N  K  F  Y  N  I  N  Y  E  K  L  S  C  K  E  E  F  I  I  V  Y  I  S  N  V  V  I  F  *  G  V  S  F  L  C  W  *  Q  V  *  H  V  *  Y  C  V  V  A  T  C  K  R  V  C  C  *  F  Y  N  I  N  Y  E  M  L  N  I :   K  F  V  Q  Y  H  K  T  *  K  F  *  N  </first_frame>
            <second_frame>  K  R  P  K  P  L  Y  Y  T  L  K  F  C  K  K  I  *  P  Q  K  R  W  K  *  *  R  I  W  M  L  K  N  T  W  E  D  G  M  K  L  P  H  F  H  Q  E  I  N  Q  K  M  V  *  T  Q  E  P  L  T  L  *  T  K  M  E  Q  Y  M  C  *  M  K  H  G  V  V  V  K  E  V  Q  L  K  G  L  P  I  K  L  I  Q  K  V  M  K  Q  N  L  K  *  N  F  I  S  H  L  S  C  Q  L  F  L  L  L  V  I  I  G  F  Y  I  L  M  M  I  I  N  M  L  *  L  V  S  L  V  R  N  I  F  G :   Y  Y  V  G  N  H  I  L  M  K  K  Y  T  T  N  L  L  R  R  Q  K  K  *  D  M  M  *  A  N  F  T  R  H  L  K  L  I  L  H  Q  M  V  K  M  P  Q  R  T  L  K  D  F  G  G  S  N  Q  Y  W  E  N  S  Q  S  *  I  W  F  F  *  T  N  S  *  I  N  F  T  I  *  I  M  K  S  C  L  V  K  K  S  L  L  L  F  I  F  Q  M  L  *  F  S  K  V  C  P  S  C  V  G  S  K  Y  S  M  C  N  I  V  L  L  Q  L  V  R  E  F  V  V  N  F  T  I  *  I  M  K  C  *  I   : *  N  S  Y  N  T  I  K  L  K  N  F  K  I </second_frame>
            <third_frame>   R  D  Q  N  P  Y  T  T  L  *  N  F  A  K  K  Y  D  H  K  R  D  G  S  S  E  E  F  G  C  *  K  I  H  G  K  M  V  *  N  C  L  I  S  I  K  K  S  T  K  R  W  C  K  H  K  S  H  L  H  F  K  P  R  W  N  S  T  C  V  K  *  N  M  E  W  W  *  K  R  F  N  *  R  D  C  L  *  S  *  S  K  K  *  *  S  K  T  *  S  E  I  L  Y  P  T  F  L  A  N  Y  S  Y  C  W  *  L  L  G  F  I  Y  *  *  *  L  S  I  C  F  D  W  S  A  *  *  E  I  S  L   : D  I  M  *  A  T  T  S  *  *  R  N  I  Q  P  T  C  *  E  G  K  R  S  R  I  *  C  E  Q  T  S  Q  D  T  S  S  *  S  S  T  R  W  *  R  C  P  K  G  H  *  R  I  L  V  D  Q  I  N  I  G  K  I  V  N  L  E  Y  G  F  F  K  P  I  A  K  *  I  L  Q  Y  K  L  *  K  V  V  L  *  R  R  V  Y  Y  C  L  Y  F  K  C  C  N  F  L  R  C  V  L  L  V  L  V  A  S  I  A  C  V  I  L  C  C  C  N  L  *  E  S  L  L  L  I  L  Q  Y  K  L  *  N  V  E  Y  :  K  I  R  T  I  P  *  N  L  K  I  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52495" stop="52914"/>
                    <exon start="53174" stop="53359"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KETKTLILHFEILQKNMTTKEMEVVKNLDVEKYMGRWYEIASFPSRNQPKDGVNTRATYTLNQDGTVHVLNETWSGGKRGSIEGTAYKADPKSDEAKLKVKFYIPPFLPIIPIVGDYWVLYIDDDYQYALIGQPSKKYLWILCRQPHLDEEIYNQLVEKAKEVGYDVSKLHKTPQADPPPDGEDAPKDTKGFWWIKSILGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="52500" e_stop="52914"/>
            <exon e_start="53185" e_stop="53373"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.954" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52500" e_stop="52914" e_length="415"/>
          </exon>
          <intron i_serial="1" don_prob="0.954" acc_prob="0.986">
            <gDNA_intron_boundary i_start="52915" i_stop="53184" i_length="270"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53185" e_stop="53373" e_length="189"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52500" stop="52914"/>
              <exon start="53185" stop="53373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52538" stop="52835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52584" stop="52821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACCAAAACCCTTATACTACACTTTGAAATTTTGCAAAAAAATATGACCACAAAAGAGATGGAAGTAGTGAAGAATTTGGATGTTGAAAAATACATGGGAAGATGGTATGAAATTGCCTCATTTCCATCAAGAAATCAACCAAAAGATGGTGTAAACACAAGAGCCACTTACACTTTAAACCAAGATGGAACAGTACATGTGTTAAATGAAACATGGAGTGGTGGTAAAAGAGGTTCAATTGAAGGGACTGCCTATAAAGCTGATCCAAAAAGTGATGAAGCAAAACTTAAAGTGAAATTTTATATCCCACCTTTCTTGCCAATTATTCCTATTGTTGGTGATTATTGGGTTTTATATATTGATGATGATTATCAATATGCTTTGATTGGTCAGCCTAGTAAGAAATATCTTTGG : GCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTGGTGGATCAAATCAATATTGGGAAAATAGTCAATCTTGAATAT</gDNA_template>
            <first_frame> D  Q  N  P  Y  T  T  L  *  N  F  A  K  K  Y  D  H  K  R  D  G  S  S  E  E  F  G  C  *  K  I  H  G  K  M  V  *  N  C  L  I  S  I  K  K  S  T  K  R  W  C  K  H  K  S  H  L  H  F  K  P  R  W  N  S  T  C  V  K  *  N  M  E  W  W  *  K  R  F  N  *  R  D  C  L  *  S  *  S  K  K  *  *  S  K  T  *  S  E  I  L  Y  P  T  F  L  A  N  Y  S  Y  C  W  *  L  L  G  F  I  Y  *  *  *  L  S  I  C  F  D  W  S  A  *  *  E  I  S  L   : G  N  H  I  L  M  K  K  Y  T  T  N  L  L  R  R  Q  K  K  *  D  M  M  *  A  N  F  T  R  H  L  K  L  I  L  H  Q  M  V  K  M  P  Q  R  T  L  K  D  F  G  G  S  N  Q  Y  W  E  N  S  Q  S  *  I  </first_frame>
            <second_frame>  T  K  T  L  I  L  H  F  E  I  L  Q  K  N  M  T  T  K  E  M  E  V  V  K  N  L  D  V  E  K  Y  M  G  R  W  Y  E  I  A  S  F  P  S  R  N  Q  P  K  D  G  V  N  T  R  A  T  Y  T  L  N  Q  D  G  T  V  H  V  L  N  E  T  W  S  G  G  K  R  G  S  I  E  G  T  A  Y  K  A  D  P  K  S  D  E  A  K  L  K  V  K  F  Y  I  P  P  F  L  P  I  I  P  I  V  G  D  Y  W  V  L  Y  I  D  D  D  Y  Q  Y  A  L  I  G  Q  P  S  K  K  Y  L  W  :  A  T  T  S  *  *  R  N  I  Q  P  T  C  *  E  G  K  R  S  R  I  *  C  E  Q  T  S  Q  D  T  S  S  *  S  S  T  R  W  *  R  C  P  K  G  H  *  R  I  L  V  D  Q  I  N  I  G  K  I  V  N  L  E  Y </second_frame>
            <third_frame>   P  K  P  L  Y  Y  T  L  K  F  C  K  K  I  *  P  Q  K  R  W  K  *  *  R  I  W  M  L  K  N  T  W  E  D  G  M  K  L  P  H  F  H  Q  E  I  N  Q  K  M  V  *  T  Q  E  P  L  T  L  *  T  K  M  E  Q  Y  M  C  *  M  K  H  G  V  V  V  K  E  V  Q  L  K  G  L  P  I  K  L  I  Q  K  V  M  K  Q  N  L  K  *  N  F  I  S  H  L  S  C  Q  L  F  L  L  L  V  I  I  G  F  Y  I  L  M  M  I  I  N  M  L  *  L  V  S  L  V  R  N  I  F  G :   Q  P  H  L  D  E  E  I  Y  N  Q  L  V  E  K  A  K  E  V  G  Y  D  V  S  K  L  H  K  T  P  Q  A  D  P  P  P  D  G  E  D  A  P  K  D  T  K  G  F  W  W  I  K  S  I  L  G  K  *  S  I  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52501" stop="52914"/>
                    <exon start="53185" stop="53199"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKTLILHFEILQKNMTTKEMEVVKNLDVEKYMGRWYEIASFPSRNQPKDGVNTRATYTLNQDGTVHVLNETWSGGKRGSIEGTAYKADPKSDEAKLKVKFYIPPFLPIIPIVGDYWVLYIDDDYQYALIGQPSKKYLWATTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="53081" e_stop="53595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="53081" e_stop="53595" e_length="515"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53081" stop="53595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375088" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTATAACATGTTTTCCGAGGAGATTTATCTATAGATATCTTCTGCTTGATCATATTATATGTTTTTAACAAAATGTTTATTCTGGTTTATAGATATTATGTAGGCAACCACATCTTGATGAAGAAATATACAACCAACTTGTTGAGAAGGCAAAAGAAGTAGGATATGATGTGAGCAAACTTCACAAGACACCTCAAGCTGATCCTCCACCAGATGGTGAAGATGCCCCAAAGGACACTAAAGGATTTTGGTGGATCAAATCAATATTGGGAAAATAGTCAATCTTGAATATGGTTTTTTTAAACCAATAGCTAAATAAATTTTACAATATAAATTATGAAAAGTTGTCTTGTAAAGAAGAGTTTATTATTGTTTATATTTCAAATGTTGTAATTTTCTAAGGTGTGTCCTTCTTGTGTTGGTAGCAAGTATAGCATGTGTAATATTGTGTTGTTGCAACTTGTAAGAGAGTTTGTTGTTAATTTTACAATATAAATTATGAAATGTTGAATAT</gDNA_template>
            <first_frame> F  I  T  C  F  P  R  R  F  I  Y  R  Y  L  L  L  D  H  I  I  C  F  *  Q  N  V  Y  S  G  L  *  I  L  C  R  Q  P  H  L  D  E  E  I  Y  N  Q  L  V  E  K  A  K  E  V  G  Y  D  V  S  K  L  H  K  T  P  Q  A  D  P  P  P  D  G  E  D  A  P  K  D  T  K  G  F  W  W  I  K  S  I  L  G  K  *  S  I  L  N  M  V  F  L  N  Q  *  L  N  K  F  Y  N  I  N  Y  E  K  L  S  C  K  E  E  F  I  I  V  Y  I  S  N  V  V  I  F  *  G  V  S  F  L  C  W  *  Q  V  *  H  V  *  Y  C  V  V  A  T  C  K  R  V  C  C  *  F  Y  N  I  N  Y  E  M  L  N   </first_frame>
            <second_frame>  L  *  H  V  F  R  G  D  L  S  I  D  I  F  C  L  I  I  L  Y  V  F  N  K  M  F  I  L  V  Y  R  Y  Y  V  G  N  H  I  L  M  K  K  Y  T  T  N  L  L  R  R  Q  K  K  *  D  M  M  *  A  N  F  T  R  H  L  K  L  I  L  H  Q  M  V  K  M  P  Q  R  T  L  K  D  F  G  G  S  N  Q  Y  W  E  N  S  Q  S  *  I  W  F  F  *  T  N  S  *  I  N  F  T  I  *  I  M  K  S  C  L  V  K  K  S  L  L  L  F  I  F  Q  M  L  *  F  S  K  V  C  P  S  C  V  G  S  K  Y  S  M  C  N  I  V  L  L  Q  L  V  R  E  F  V  V  N  F  T  I  *  I  M  K  C  *  I  </second_frame>
            <third_frame>   Y  N  M  F  S  E  E  I  Y  L  *  I  S  S  A  *  S  Y  Y  M  F  L  T  K  C  L  F  W  F  I  D  I  M  *  A  T  T  S  *  *  R  N  I  Q  P  T  C  *  E  G  K  R  S  R  I  *  C  E  Q  T  S  Q  D  T  S  S  *  S  S  T  R  W  *  R  C  P  K  G  H  *  R  I  L  V  D  Q  I  N  I  G  K  I  V  N  L  E  Y  G  F  F  K  P  I  A  K  *  I  L  Q  Y  K  L  *  K  V  V  L  *  R  R  V  Y  Y  C  L  Y  F  K  C  C  N  F  L  R  C  V  L  L  V  L  V  A  S  I  A  C  V  I  L  C  C  C  N  L  *  E  S  L  L  L  I  L  Q  Y  K  L  *  N  V  E  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0002D20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="65811" PGL_stop="61916"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65811" e_stop="65374"/>
            <exon e_start="64479" e_stop="64382"/>
            <exon e_start="64289" e_stop="64185"/>
            <exon e_start="64069" e_stop="64004"/>
            <exon e_start="63031" e_stop="62945"/>
            <exon e_start="62139" e_stop="61916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.683" e_score="0.993"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="65811" e_stop="65374" e_length="438"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.683">
            <gDNA_intron_boundary i_start="65373" i_stop="64480" i_length="894"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64479" e_stop="64382" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64381" i_stop="64290" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64289" e_stop="64185" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64184" i_stop="64070" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64069" e_stop="64004" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.910" acc_prob="0.891">
            <gDNA_intron_boundary i_start="64003" i_stop="63032" i_length="972"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="63031" e_stop="62945" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.963">
            <gDNA_intron_boundary i_start="62944" i_stop="62140" i_length="805"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="62139" e_stop="61916" e_length="224"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65811" stop="65374"/>
              <exon start="64479" stop="64382"/>
              <exon start="64289" stop="64250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65687" stop="65374"/>
              <exon start="64479" stop="64452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65685" stop="65374"/>
              <exon start="64479" stop="64382"/>
              <exon start="64289" stop="64185"/>
              <exon start="64069" stop="64004"/>
              <exon start="63031" stop="62945"/>
              <exon start="62139" stop="62128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65661" stop="65374"/>
              <exon start="64479" stop="64382"/>
              <exon start="64289" stop="64185"/>
              <exon start="64069" stop="64004"/>
              <exon start="63031" stop="62975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65661" stop="65374"/>
              <exon start="64479" stop="64382"/>
              <exon start="64289" stop="64185"/>
              <exon start="64069" stop="64004"/>
              <exon start="63031" stop="62975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65584" stop="65374"/>
              <exon start="64479" stop="64382"/>
              <exon start="64289" stop="64185"/>
              <exon start="64069" stop="64010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65576" stop="65374"/>
              <exon start="64479" stop="64382"/>
              <exon start="64289" stop="64185"/>
              <exon start="64069" stop="64004"/>
              <exon start="63031" stop="63013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65564" stop="65374"/>
              <exon start="64479" stop="64382"/>
              <exon start="64289" stop="64185"/>
              <exon start="64069" stop="64004"/>
              <exon start="63031" stop="62945"/>
              <exon start="62139" stop="62007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65564" stop="65374"/>
              <exon start="64479" stop="64382"/>
              <exon start="64289" stop="64185"/>
              <exon start="64069" stop="64004"/>
              <exon start="63031" stop="62994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65521" stop="65374"/>
              <exon start="64479" stop="64382"/>
              <exon start="64289" stop="64185"/>
              <exon start="64069" stop="64004"/>
              <exon start="63031" stop="62945"/>
              <exon start="62139" stop="61916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65405" stop="65374"/>
              <exon start="64479" stop="64382"/>
              <exon start="64289" stop="64185"/>
              <exon start="64069" stop="64004"/>
              <exon start="63031" stop="62945"/>
              <exon start="62139" stop="62017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228133" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCTCTCTCTTTTTTTTCCTTTTTCTTATTCTTATTCCTTCTCCATTAAATAATTAATAGCAATAAAATAAAATAAAATAAATAGTAATAAAATTCAACACATCGCGTAATCTGAAGAAGAATCAGTTCTATTCCTTCGAAGGCGGCCATAGAAGAGAGGAAAAAAAAATTCTTTGAAATTTATTTTGGTGTTTTTGGATAATTTTTTGAAGAAGTTTGAGAGGTTTAGAGAGAAAAACAGAGATGAAGATCACAGCTTTGATGGTGTTGAAATGCAATCCAGAAGGTTCGGATCCTGTGATCTTAGCAAACGCTTCTGATGTTAACCATTTTGGGTATTTTCAGAGATCCAGCGTTAAGGAATTTATCGTTTTTGTGGGTCGAACTGTTGCTAAAAGGAACCCACCTGGACAACGACAATCTGTTCAGCATGAAG : AATACAAGGTGCATTCATACAATCGAAATGGTTTATGTGCTTTGGGCTTCATGGATGATCACTATCCAGTTCGAAGTGCATTTTCACTGCTCAACCAG : GTTTTGGATGAGTATCTGAAGAATTTTGGTGAGTCATGGAAGACGGCTCAATGCGACAATGCTCAACCATGGCCTTATCTGAATGAAGCTCTAGCCAAATTTCAG : GATCCTGCTGAGGCCGATAAGCTGTTCAAAATTCAACGAGAGTTGGATGAAACAAAAATTATTCTC : CATAAGACAATTGACAGTGTCTTAGAACGTGGTGAGAAGCTAGACAGTTTGGTTGAGAAGAGTTCAGATCTCAGTGCTGCTTCACAG : ATGTTCTACAAGCAGGCAAAGAAAACCAATTCATGCTGTACAATTTTATAGACTGTTTTCTGAAGATGGAAGGGGGCGATTCAACCACGGATAAACTTGTGTCTATGTTGCATATGAAGTATCGGAGAATTGTTTGTTTATATCATCCATGATATTCTATAAGCTTGAATTCTTTTTGTTCTCTATTGTAATATGATCTCAGATGAAGAGAAAGAGTCAGTCTC</gDNA_template>
            <first_frame> L  S  L  S  F  F  S  F  F  L  F  L  F  L  L  H  *  I  I  N  S  N  K  I  K  *  N  K  *  *  *  N  S  T  H  R  V  I  *  R  R  I  S  S  I  P  S  K  A  A  I  E  E  R  K  K  K  F  F  E  I  Y  F  G  V  F  G  *  F  F  E  E  V  *  E  V  *  R  E  K  Q  R  *  R  S  Q  L  *  W  C  *  N  A  I  Q  K  V  R  I  L  *  S  *  Q  T  L  L  M  L  T  I  L  G  I  F  R  D  P  A  L  R  N  L  S  F  L  W  V  E  L  L  L  K  G  T  H  L  D  N  D  N  L  F  S  M  K  :  N  T  R  C  I  H  T  I  E  M  V  Y  V  L  W  A  S  W  M  I  T  I  Q  F  E  V  H  F  H  C  S  T  R :   F  W  M  S  I  *  R  I  L  V  S  H  G  R  R  L  N  A  T  M  L  N  H  G  L  I  *  M  K  L  *  P  N  F  R :   I  L  L  R  P  I  S  C  S  K  F  N  E  S  W  M  K  Q  K  L  F  S :   I  R  Q  L  T  V  S  *  N  V  V  R  S  *  T  V  W  L  R  R  V  Q  I  S  V  L  L  H  R :   C  S  T  S  R  Q  R  K  P  I  H  A  V  Q  F  Y  R  L  F  S  E  D  G  R  G  R  F  N  H  G  *  T  C  V  Y  V  A  Y  E  V  S  E  N  C  L  F  I  S  S  M  I  F  Y  K  L  E  F  F  L  F  S  I  V  I  *  S  Q  M  K  R  K  S  Q  S  </first_frame>
            <second_frame>  S  L  S  L  F  F  P  F  S  Y  S  Y  S  F  S  I  K  *  L  I  A  I  K  *  N  K  I  N  S  N  K  I  Q  H  I  A  *  S  E  E  E  S  V  L  F  L  R  R  R  P  *  K  R  G  K  K  N  S  L  K  F  I  L  V  F  L  D  N  F  L  K  K  F  E  R  F  R  E  K  N  R  D  E  D  H  S  F  D  G  V  E  M  Q  S  R  R  F  G  S  C  D  L  S  K  R  F  *  C  *  P  F  W  V  F  S  E  I  Q  R  *  G  I  Y  R  F  C  G  S  N  C  C  *  K  E  P  T  W  T  T  T  I  C  S  A  *  R :   I  Q  G  A  F  I  Q  S  K  W  F  M  C  F  G  L  H  G  *  S  L  S  S  S  K  C  I  F  T  A  Q  P   : G  F  G  *  V  S  E  E  F  W  *  V  M  E  D  G  S  M  R  Q  C  S  T  M  A  L  S  E  *  S  S  S  Q  I  S   : G  S  C  *  G  R  *  A  V  Q  N  S  T  R  V  G  *  N  K  N  Y  S   : P  *  D  N  *  Q  C  L  R  T  W  *  E  A  R  Q  F  G  *  E  E  F  R  S  Q  C  C  F  T   : D  V  L  Q  A  G  K  E  N  Q  F  M  L  Y  N  F  I  D  C  F  L  K  M  E  G  G  D  S  T  T  D  K  L  V  S  M  L  H  M  K  Y  R  R  I  V  C  L  Y  H  P  *  Y  S  I  S  L  N  S  F  C  S  L  L  *  Y  D  L  R  *  R  E  R  V  S  L </second_frame>
            <third_frame>   L  S  L  F  F  F  L  F  L  I  L  I  P  S  P  L  N  N  *  *  Q  *  N  K  I  K  *  I  V  I  K  F  N  T  S  R  N  L  K  K  N  Q  F  Y  S  F  E  G  G  H  R  R  E  E  K  K  I  L  *  N  L  F  W  C  F  W  I  I  F  *  R  S  L  R  G  L  E  R  K  T  E  M  K  I  T  A  L  M  V  L  K  C  N  P  E  G  S  D  P  V  I  L  A  N  A  S  D  V  N  H  F  G  Y  F  Q  R  S  S  V  K  E  F  I  V  F  V  G  R  T  V  A  K  R  N  P  P  G  Q  R  Q  S  V  Q  H  E   : E  Y  K  V  H  S  Y  N  R  N  G  L  C  A  L  G  F  M  D  D  H  Y  P  V  R  S  A  F  S  L  L  N  Q  :  V  L  D  E  Y  L  K  N  F  G  E  S  W  K  T  A  Q  C  D  N  A  Q  P  W  P  Y  L  N  E  A  L  A  K  F  Q  :  D  P  A  E  A  D  K  L  F  K  I  Q  R  E  L  D  E  T  K  I  I  L  :  H  K  T  I  D  S  V  L  E  R  G  E  K  L  D  S  L  V  E  K  S  S  D  L  S  A  A  S  Q  :  M  F  Y  K  Q  A  K  K  T  N  S  C  C  T  I  L  *  T  V  F  *  R  W  K  G  A  I  Q  P  R  I  N  L  C  L  C  C  I  *  S  I  G  E  L  F  V  Y  I  I  H  D  I  L  *  A  *  I  L  F  V  L  Y  C  N  M  I  S  D  E  E  K  E  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65599" stop="65374"/>
                    <exon start="64479" stop="64382"/>
                    <exon start="64289" stop="64185"/>
                    <exon start="64069" stop="64004"/>
                    <exon start="63031" stop="62945"/>
                    <exon start="62139" stop="62089"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSLRGLERKTEMKITALMVLKCNPEGSDPVILANASDVNHFGYFQRSSVKEFIVFVGRTVAKRNPPGQRQSVQHEEYKVHSYNRNGLCALGFMDDHYPVRSAFSLLNQVLDEYLKNFGESWKTAQCDNAQPWPYLNEALAKFQDPAEADKLFKIQRELDETKIILHKTIDSVLERGEKLDSLVEKSSDLSAASQMFYKQAKKTNSCCTIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="65054" e_stop="64630"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65054" e_stop="64630" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65054" stop="64630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313060" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGGTACCTGTATTCAAGGTGCGTGCAAGTGAGCATAGACACCGATCGTTATGAAAAAAGATGCAAGCTTGTGGTCCTATAGGTGCTCCTGATGCTTTGAGTCTTGCATTTTGTGATTTTCTGTTTTCATTTCTCTTTTTCTTTTTTTTGTGTTTTGGGGATGGTTTTGCACAAAAGTTTATCAATAACCTCAAGGTACATGTTACCCTACCCAGAAGCCACTTTTTTGAACTACACGGGGTATGTTGTCCTTGTACAAAAGTAGAAGGATGAATGAAGTGTTGACTAGCTTGGTTGGGAAAATTGTTATGTTTAACGAATTGATCTTTTTCAGTTATATTTCTTGAAGTCTTCACATGCTTACACAAGTAATGTTAATCGGTGTTCTTGATATATATCAACTAGTGTAGGATATAAAAATTTG</gDNA_template>
            <first_frame> A  G  T  C  I  Q  G  A  C  K  *  A  *  T  P  I  V  M  K  K  D  A  S  L  W  S  Y  R  C  S  *  C  F  E  S  C  I  L  *  F  S  V  F  I  S  L  F  L  F  F  V  F  W  G  W  F  C  T  K  V  Y  Q  *  P  Q  G  T  C  Y  P  T  Q  K  P  L  F  *  T  T  R  G  M  L  S  L  Y  K  S  R  R  M  N  E  V  L  T  S  L  V  G  K  I  V  M  F  N  E  L  I  F  F  S  Y  I  S  *  S  L  H  M  L  T  Q  V  M  L  I  G  V  L  D  I  Y  Q  L  V  *  D  I  K  I   </first_frame>
            <second_frame>  Q  V  P  V  F  K  V  R  A  S  E  H  R  H  R  S  L  *  K  K  M  Q  A  C  G  P  I  G  A  P  D  A  L  S  L  A  F  C  D  F  L  F  S  F  L  F  F  F  F  L  C  F  G  D  G  F  A  Q  K  F  I  N  N  L  K  V  H  V  T  L  P  R  S  H  F  F  E  L  H  G  V  C  C  P  C  T  K  V  E  G  *  M  K  C  *  L  A  W  L  G  K  L  L  C  L  T  N  *  S  F  S  V  I  F  L  E  V  F  T  C  L  H  K  *  C  *  S  V  F  L  I  Y  I  N  *  C  R  I  *  K  F  </second_frame>
            <third_frame>   R  Y  L  Y  S  R  C  V  Q  V  S  I  D  T  D  R  Y  E  K  R  C  K  L  V  V  L  *  V  L  L  M  L  *  V  L  H  F  V  I  F  C  F  H  F  S  F  S  F  F  C  V  L  G  M  V  L  H  K  S  L  S  I  T  S  R  Y  M  L  P  Y  P  E  A  T  F  L  N  Y  T  G  Y  V  V  L  V  Q  K  *  K  D  E  *  S  V  D  *  L  G  W  E  N  C  Y  V  *  R  I  D  L  F  Q  L  Y  F  L  K  S  S  H  A  Y  T  S  N  V  N  R  C  S  *  Y  I  S  T  S  V  G  Y  K  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64999" stop="64781"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMQACGPIGAPDALSLAFCDFLFSFLFFFFLCFGDGFAQKFINNLKVHVTLPRSHFFELHGVCCPCTKVEG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="72217" PGL_stop="73661"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72217" e_stop="73661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="72217" e_stop="73661" e_length="1445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72217" stop="72587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72218" stop="72952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72223" stop="72909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72224" stop="72683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72225" stop="72676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72510" stop="73128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72671" stop="73336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72689" stop="73333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72744" stop="73330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72745" stop="73337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73250" stop="73661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226787" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73436" stop="73661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226638" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCTCTTCGATTTCTCTTCAATTCAGGTATTCTTTTTTAAATTTCTCTTCGATTTCAATTCATAAACCCTAATAATGGAACCCCAAATGCGCAATTTCCCAGTTTTTATACAATCGCCAGAGCTTCAGATCCCTACTCATGTCCTAAATATTGAAAACCCTAATCCTAATTTCACTTTGCAAGACCTCAAATCATGTTTGCTTGAAAAAACCCAGAAATCATTGGCTGCAATTAAGGATTCTGTCTATCTTACTTTTGATGGTCGACCCATTAAGGATTCAACTCTATTATATGGTTCTGGGATTAGCCCGTTTTCCACTTTGGTACTACGTTTCCGCCTTCGTGGTGGTGGTGGTGATGGAGGTGCCACGGGAGCGGAGTCCCGAGACTGTTATCTCAAGATGTATGCTGTTAAGAAACCGGATAAAATTGATCCAAATGAGATTAGGTTGTCTAGATGGTTGAATTGTGCGTTGTCGAACGAGTCATTAAAGCATCCTGTTGTTATTGATAAGCTTGGGAATTTGTTCAATAAGGAGACGTTAGTTGAGGCTTTATTGAAGAAAAGGCTGCCTAAGCAGTTTGGGTATATAAAGGGATTGAAAGATATGATTCCGGTTGAGCTATCGGTGATTCCGGGCAAAGAGGATAGAGGGCTTGGTGATGGTGAAGGGACTGGGTTTCAGTGCCCGGTAACAGGGTTGGAGTTCAATGGGAAGTACAAGTTCTTTGCTTTGAGGGGTTGTGGGCATGTTTTGAGTGCAAAAGCTTTGAAGGAGGTGAAATCCTCGGCTTGTTTGGTTTGCCACAAGGAGGTTGTGGAGAGTGACAAAATTGTGATCAACGGGAGTGAAGAAGAGGTTGCGGCTTTGAGGGAGAGAATGGAGGAAGAAAGGGTGAAATTGAAGGATAGTAAGAAGGTGAAGAAGGGGAGGAATGTGGATGTAGCTGTGAATGGTGAAGAGGTCATTGGGGCATCACGCTTGAGCGGAATGAAACATGGGATTGAGGATAAGCTGGTAGGCAAGGATGCAAGGAAAGTGGAAGGGAATGGTAAAATTGGCATTAAAAGTAAGATTGAAGTTAAGGATGTGAAGAATAGTTCGAGCAACGGGTCTGGGAAGAGGTTTAAGGCTGTTGATGTAGCTCCAGCTCATGCTACAAAGGAAGTCTATGCCTCCATTTTCACTTCATCAAGAAAGTCTGACTTCAAGGAGACTTATTCTTGCAGATCTTTGCCCCTTGGAAGAAACTGATAGCTGTTTTTGTCGAGGTGATCTGCTAGTGTCTTGGACTGGTTTTATTGTCTTAAAATGTTGTTTCACGATAGATAGTTACATGCTAGACCACTGAGTCGTAGATGTTGCCTCTTGCCATTTGATTCAGTCGGTACTTTATATGTATAACATACATTGTTATTGTACATTTGATGTTGCTTTTCAGA</gDNA_template>
            <first_frame> E  L  F  D  F  S  S  I  Q  V  F  F  F  K  F  L  F  D  F  N  S  *  T  L  I  M  E  P  Q  M  R  N  F  P  V  F  I  Q  S  P  E  L  Q  I  P  T  H  V  L  N  I  E  N  P  N  P  N  F  T  L  Q  D  L  K  S  C  L  L  E  K  T  Q  K  S  L  A  A  I  K  D  S  V  Y  L  T  F  D  G  R  P  I  K  D  S  T  L  L  Y  G  S  G  I  S  P  F  S  T  L  V  L  R  F  R  L  R  G  G  G  G  D  G  G  A  T  G  A  E  S  R  D  C  Y  L  K  M  Y  A  V  K  K  P  D  K  I  D  P  N  E  I  R  L  S  R  W  L  N  C  A  L  S  N  E  S  L  K  H  P  V  V  I  D  K  L  G  N  L  F  N  K  E  T  L  V  E  A  L  L  K  K  R  L  P  K  Q  F  G  Y  I  K  G  L  K  D  M  I  P  V  E  L  S  V  I  P  G  K  E  D  R  G  L  G  D  G  E  G  T  G  F  Q  C  P  V  T  G  L  E  F  N  G  K  Y  K  F  F  A  L  R  G  C  G  H  V  L  S  A  K  A  L  K  E  V  K  S  S  A  C  L  V  C  H  K  E  V  V  E  S  D  K  I  V  I  N  G  S  E  E  E  V  A  A  L  R  E  R  M  E  E  E  R  V  K  L  K  D  S  K  K  V  K  K  G  R  N  V  D  V  A  V  N  G  E  E  V  I  G  A  S  R  L  S  G  M  K  H  G  I  E  D  K  L  V  G  K  D  A  R  K  V  E  G  N  G  K  I  G  I  K  S  K  I  E  V  K  D  V  K  N  S  S  S  N  G  S  G  K  R  F  K  A  V  D  V  A  P  A  H  A  T  K  E  V  Y  A  S  I  F  T  S  S  R  K  S  D  F  K  E  T  Y  S  C  R  S  L  P  L  G  R  N  *  *  L  F  L  S  R  *  S  A  S  V  L  D  W  F  Y  C  L  K  M  L  F  H  D  R  *  L  H  A  R  P  L  S  R  R  C  C  L  L  P  F  D  S  V  G  T  L  Y  V  *  H  T  L  L  L  Y  I  *  C  C  F  S   </first_frame>
            <second_frame>  S  S  S  I  S  L  Q  F  R  Y  S  F  L  N  F  S  S  I  S  I  H  K  P  *  *  W  N  P  K  C  A  I  S  Q  F  L  Y  N  R  Q  S  F  R  S  L  L  M  S  *  I  L  K  T  L  I  L  I  S  L  C  K  T  S  N  H  V  C  L  K  K  P  R  N  H  W  L  Q  L  R  I  L  S  I  L  L  L  M  V  D  P  L  R  I  Q  L  Y  Y  M  V  L  G  L  A  R  F  P  L  W  Y  Y  V  S  A  F  V  V  V  V  V  M  E  V  P  R  E  R  S  P  E  T  V  I  S  R  C  M  L  L  R  N  R  I  K  L  I  Q  M  R  L  G  C  L  D  G  *  I  V  R  C  R  T  S  H  *  S  I  L  L  L  L  I  S  L  G  I  C  S  I  R  R  R  *  L  R  L  Y  *  R  K  G  C  L  S  S  L  G  I  *  R  D  *  K  I  *  F  R  L  S  Y  R  *  F  R  A  K  R  I  E  G  L  V  M  V  K  G  L  G  F  S  A  R  *  Q  G  W  S  S  M  G  S  T  S  S  L  L  *  G  V  V  G  M  F  *  V  Q  K  L  *  R  R  *  N  P  R  L  V  W  F  A  T  R  R  L  W  R  V  T  K  L  *  S  T  G  V  K  K  R  L  R  L  *  G  R  E  W  R  K  K  G  *  N  *  R  I  V  R  R  *  R  R  G  G  M  W  M  *  L  *  M  V  K  R  S  L  G  H  H  A  *  A  E  *  N  M  G  L  R  I  S  W  *  A  R  M  Q  G  K  W  K  G  M  V  K  L  A  L  K  V  R  L  K  L  R  M  *  R  I  V  R  A  T  G  L  G  R  G  L  R  L  L  M  *  L  Q  L  M  L  Q  R  K  S  M  P  P  F  S  L  H  Q  E  S  L  T  S  R  R  L  I  L  A  D  L  C  P  L  E  E  T  D  S  C  F  C  R  G  D  L  L  V  S  W  T  G  F  I  V  L  K  C  C  F  T  I  D  S  Y  M  L  D  H  *  V  V  D  V  A  S  C  H  L  I  Q  S  V  L  Y  M  Y  N  I  H  C  Y  C  T  F  D  V  A  F  Q  </second_frame>
            <third_frame>   A  L  R  F  L  F  N  S  G  I  L  F  *  I  S  L  R  F  Q  F  I  N  P  N  N  G  T  P  N  A  Q  F  P  S  F  Y  T  I  A  R  A  S  D  P  Y  S  C  P  K  Y  *  K  P  *  S  *  F  H  F  A  R  P  Q  I  M  F  A  *  K  N  P  E  I  I  G  C  N  *  G  F  C  L  S  Y  F  *  W  S  T  H  *  G  F  N  S  I  I  W  F  W  D  *  P  V  F  H  F  G  T  T  F  P  P  S  W  W  W  W  *  W  R  C  H  G  S  G  V  P  R  L  L  S  Q  D  V  C  C  *  E  T  G  *  N  *  S  K  *  D  *  V  V  *  M  V  E  L  C  V  V  E  R  V  I  K  A  S  C  C  Y  *  *  A  W  E  F  V  Q  *  G  D  V  S  *  G  F  I  E  E  K  A  A  *  A  V  W  V  Y  K  G  I  E  R  Y  D  S  G  *  A  I  G  D  S  G  Q  R  G  *  R  A  W  *  W  *  R  D  W  V  S  V  P  G  N  R  V  G  V  Q  W  E  V  Q  V  L  C  F  E  G  L  W  A  C  F  E  C  K  S  F  E  G  G  E  I  L  G  L  F  G  L  P  Q  G  G  C  G  E  *  Q  N  C  D  Q  R  E  *  R  R  G  C  G  F  E  G  E  N  G  G  R  K  G  E  I  E  G  *  *  E  G  E  E  G  E  E  C  G  C  S  C  E  W  *  R  G  H  W  G  I  T  L  E  R  N  E  T  W  D  *  G  *  A  G  R  Q  G  C  K  E  S  G  R  E  W  *  N  W  H  *  K  *  D  *  S  *  G  C  E  E  *  F  E  Q  R  V  W  E  E  V  *  G  C  *  C  S  S  S  S  C  Y  K  G  S  L  C  L  H  F  H  F  I  K  K  V  *  L  Q  G  D  L  F  L  Q  I  F  A  P  W  K  K  L  I  A  V  F  V  E  V  I  C  *  C  L  G  L  V  L  L  S  *  N  V  V  S  R  *  I  V  T  C  *  T  T  E  S  *  M  L  P  L  A  I  *  F  S  R  Y  F  I  C  I  T  Y  I  V  I  V  H  L  M  L  L  F  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72283" stop="73473"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1188</number_coding_nucleotides>
                  <number_encoded_amino_acids>396</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLIMEPQMRNFPVFIQSPELQIPTHVLNIENPNPNFTLQDLKSCLLEKTQKSLAAIKDSVYLTFDGRPIKDSTLLYGSGISPFSTLVLRFRLRGGGGDGGATGAESRDCYLKMYAVKKPDKIDPNEIRLSRWLNCALSNESLKHPVVIDKLGNLFNKETLVEALLKKRLPKQFGYIKGLKDMIPVELSVIPGKEDRGLGDGEGTGFQCPVTGLEFNGKYKFFALRGCGHVLSAKALKEVKSSACLVCHKEVVESDKIVINGSEEEVAALRERMEEERVKLKDSKKVKKGRNVDVAVNGEEVIGASRLSGMKHGIEDKLVGKDARKVEGNGKIGIKSKIEVKDVKNSSSNGSGKRFKAVDVAPAHATKEVYASIFTSSRKSDFKETYSCRSLPLGRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="75347" PGL_stop="78688"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75347" e_stop="76482"/>
            <exon e_start="78001" e_stop="78319"/>
            <exon e_start="78420" e_stop="78688"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75347" e_stop="76482" e_length="1136"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76483" i_stop="78000" i_length="1518"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78001" e_stop="78319" e_length="319"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="78320" i_stop="78419" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78420" e_stop="78688" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75347" stop="75869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75352" stop="75912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75371" stop="75884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75461" stop="75795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75462" stop="75882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75465" stop="75823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75516" stop="76020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75671" stop="76010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75771" stop="76210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75804" stop="76314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75948" stop="76482"/>
              <exon start="78001" stop="78090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76105" stop="76482"/>
              <exon start="78001" stop="78319"/>
              <exon start="78420" stop="78575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76105" stop="76482"/>
              <exon start="78001" stop="78319"/>
              <exon start="78420" stop="78510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76167" stop="76482"/>
              <exon start="78001" stop="78319"/>
              <exon start="78420" stop="78549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76238" stop="76482"/>
              <exon start="78001" stop="78319"/>
              <exon start="78420" stop="78587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577992" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78012" stop="78319"/>
              <exon start="78420" stop="78618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78028" stop="78319"/>
              <exon start="78420" stop="78688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78028" stop="78319"/>
              <exon start="78420" stop="78583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78028" stop="78319"/>
              <exon start="78420" stop="78534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233453" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTATTCTCTTTCCTTTTGGTCAAAATAGTCCAAATTTCAAATTGGACTATTCTTCTTCATATATATAAATAAATCATCTATCTCTGCATCAACCATATCAACCATGATAAGCAAAACTTCTTTTGTGCTATTTCTCATTGCTATTGCTCTTTTTCTTCATGATGTAACTTCTATAGGTGTTAATTACGGGACTCTCGGAAACAACCTCCCTCCGCCAGCTCAAGTGGCTCAGTTCATCAAGGATAAAACGGTCATAGACCGTGTAAAGATTTTCGATATCAACCCTGACATCCTCCGTGCTTTTGCAAACACAGGAATCTCGCTAACAGTCACAGTACCAAACGGCGAGATCCCGAATCTACTGGATCTCGCCTATGCTCGACGATACGTCGAGCAGAATATCAAACCTCATTACCCACAGACAAAGATGGATGTTATTCTAGTGGGTAATGAGGTTCTTCACTGGGATACACCTGAGGTACAGAACAAGCTTGTTCCAGCTATGAAAGTTTTTTACCAAGCTTTGGGTTTATCTGGGTTGAAGGGTATAAAAGTCTCTTCAGCTCATTCGTTGGGTATTCTACTCCGTTCTAACCCACCCAGTGCAGCCCGGTTTCGACCCGGTTGGGATGTGGGTATTCTAGCTCCGATGCTACAATTTCTTCGTGAAACAAAAGGTCCTTTCATGGTAAATCCCTATCCCTACTTCGGATACAACAAGAAACAAGAGGATTTTCTTCTATTTAGAAAGAATAAAGGGGTTTACGATAGATTTTCGAAGAAATGGTATACGAATTCTTTTGATATGTTGTTGGATGCGGTGTATATGTCGATGGTGAGATTGAAGCATTCAGATGTGGAGATTGTTGCTGCTGAGACAGGGTGGCCTTCGCAAGGAGAAGCGTATGAACCGCAATGTACTGTGGAAAATGCAGCTTCGTATAATGGTGGATTGATGAAGAAATATAATTCCGGGATCGGTACGCCATTGATGCCGCACAGGAAGATCGAGACCTACATTTTTTCATTGTTCAATGAGAACACCAAACCCGGATCCATCGCTGAGAGGAACTTCGGGTTGTTCCGACCCGATTTCACTCCGGTTTATGATGTCGGAGTTTTGAAAAGCAACCAG : GCTCACCCAACACCTTCATTGCCCCCACCAAAAACCGGTGGCGGAGGCAATAAAGGTCAACCAAAAACACCAGCAGAGAACAAAAAATTCTGCATGCCAAAGGTTGAGGCAACTGATGCACAACTACAATCCAACATTAACTATGTGTGCAGTCAGGGAGTTGACTGCACACCAATTCAAGTGGGTGGTTCCTGCTTTAAACCCAACACTATCCGATCTCACGCAGCCTTTGCCATGAACTCGTACTATCAAAAGGAAGGTCGAAACAACTTCAATTGTGACTTTGCTGGTACTGGTGTAGTCGCCTTCTCCGATCCAA : GTTATGGAACATGCAAATTTGAATCTTGAATGTACGTGAAGCTAAGGATGATAGCTAGTATTGACTTGTAATATTTATGAATGTTATGTACTTTGGTTTCACATATATAATCTAATTGTATTGGTTTGGTATGTAAACGTTCTTTTTATATACTATGTCATTTAATGTGCCTCATTTATTAATTTCTCTTTTCCATTTGTTTTCAATTTTATCAAGTCATCTTAAATATAGAAAAATACATATTTAAAAATAATTACTAATTTTAGCGA</gDNA_template>
            <first_frame> S  I  L  F  P  F  G  Q  N  S  P  N  F  K  L  D  Y  S  S  S  Y  I  *  I  N  H  L  S  L  H  Q  P  Y  Q  P  *  *  A  K  L  L  L  C  Y  F  S  L  L  L  L  F  F  F  M  M  *  L  L  *  V  L  I  T  G  L  S  E  T  T  S  L  R  Q  L  K  W  L  S  S  S  R  I  K  R  S  *  T  V  *  R  F  S  I  S  T  L  T  S  S  V  L  L  Q  T  Q  E  S  R  *  Q  S  Q  Y  Q  T  A  R  S  R  I  Y  W  I  S  P  M  L  D  D  T  S  S  R  I  S  N  L  I  T  H  R  Q  R  W  M  L  F  *  W  V  M  R  F  F  T  G  I  H  L  R  Y  R  T  S  L  F  Q  L  *  K  F  F  T  K  L  W  V  Y  L  G  *  R  V  *  K  S  L  Q  L  I  R  W  V  F  Y  S  V  L  T  H  P  V  Q  P  G  F  D  P  V  G  M  W  V  F  *  L  R  C  Y  N  F  F  V  K  Q  K  V  L  S  W  *  I  P  I  P  T  S  D  T  T  R  N  K  R  I  F  F  Y  L  E  R  I  K  G  F  T  I  D  F  R  R  N  G  I  R  I  L  L  I  C  C  W  M  R  C  I  C  R  W  *  D  *  S  I  Q  M  W  R  L  L  L  L  R  Q  G  G  L  R  K  E  K  R  M  N  R  N  V  L  W  K  M  Q  L  R  I  M  V  D  *  *  R  N  I  I  P  G  S  V  R  H  *  C  R  T  G  R  S  R  P  T  F  F  H  C  S  M  R  T  P  N  P  D  P  S  L  R  G  T  S  G  C  S  D  P  I  S  L  R  F  M  M  S  E  F  *  K  A  T  R :   L  T  Q  H  L  H  C  P  H  Q  K  P  V  A  E  A  I  K  V  N  Q  K  H  Q  Q  R  T  K  N  S  A  C  Q  R  L  R  Q  L  M  H  N  Y  N  P  T  L  T  M  C  A  V  R  E  L  T  A  H  Q  F  K  W  V  V  P  A  L  N  P  T  L  S  D  L  T  Q  P  L  P  *  T  R  T  I  K  R  K  V  E  T  T  S  I  V  T  L  L  V  L  V  *  S  P  S  P  I  Q  :  V  M  E  H  A  N  L  N  L  E  C  T  *  S  *  G  *  *  L  V  L  T  C  N  I  Y  E  C  Y  V  L  W  F  H  I  Y  N  L  I  V  L  V  W  Y  V  N  V  L  F  I  Y  Y  V  I  *  C  A  S  F  I  N  F  S  F  P  F  V  F  N  F  I  K  S  S  *  I  *  K  N  T  Y  L  K  I  I  T  N  F  S   </first_frame>
            <second_frame>  L  F  S  F  L  L  V  K  I  V  Q  I  S  N  W  T  I  L  L  H  I  Y  K  *  I  I  Y  L  C  I  N  H  I  N  H  D  K  Q  N  F  F  C  A  I  S  H  C  Y  C  S  F  S  S  *  C  N  F  Y  R  C  *  L  R  D  S  R  K  Q  P  P  S  A  S  S  S  G  S  V  H  Q  G  *  N  G  H  R  P  C  K  D  F  R  Y  Q  P  *  H  P  P  C  F  C  K  H  R  N  L  A  N  S  H  S  T  K  R  R  D  P  E  S  T  G  S  R  L  C  S  T  I  R  R  A  E  Y  Q  T  S  L  P  T  D  K  D  G  C  Y  S  S  G  *  *  G  S  S  L  G  Y  T  *  G  T  E  Q  A  C  S  S  Y  E  S  F  L  P  S  F  G  F  I  W  V  E  G  Y  K  S  L  F  S  S  F  V  G  Y  S  T  P  F  *  P  T  Q  C  S  P  V  S  T  R  L  G  C  G  Y  S  S  S  D  A  T  I  S  S  *  N  K  R  S  F  H  G  K  S  L  S  L  L  R  I  Q  Q  E  T  R  G  F  S  S  I  *  K  E  *  R  G  L  R  *  I  F  E  E  M  V  Y  E  F  F  *  Y  V  V  G  C  G  V  Y  V  D  G  E  I  E  A  F  R  C  G  D  C  C  C  *  D  R  V  A  F  A  R  R  S  V  *  T  A  M  Y  C  G  K  C  S  F  V  *  W  W  I  D  E  E  I  *  F  R  D  R  Y  A  I  D  A  A  Q  E  D  R  D  L  H  F  F  I  V  Q  *  E  H  Q  T  R  I  H  R  *  E  E  L  R  V  V  P  T  R  F  H  S  G  L  *  C  R  S  F  E  K  Q  P   : G  S  P  N  T  F  I  A  P  T  K  N  R  W  R  R  Q  *  R  S  T  K  N  T  S  R  E  Q  K  I  L  H  A  K  G  *  G  N  *  C  T  T  T  I  Q  H  *  L  C  V  Q  S  G  S  *  L  H  T  N  S  S  G  W  F  L  L  *  T  Q  H  Y  P  I  S  R  S  L  C  H  E  L  V  L  S  K  G  R  S  K  Q  L  Q  L  *  L  C  W  Y  W  C  S  R  L  L  R  S  K :   L  W  N  M  Q  I  *  I  L  N  V  R  E  A  K  D  D  S  *  Y  *  L  V  I  F  M  N  V  M  Y  F  G  F  T  Y  I  I  *  L  Y  W  F  G  M  *  T  F  F  L  Y  T  M  S  F  N  V  P  H  L  L  I  S  L  F  H  L  F  S  I  L  S  S  H  L  K  Y  R  K  I  H  I  *  K  *  L  L  I  L  A  </second_frame>
            <third_frame>   Y  S  L  S  F  W  S  K  *  S  K  F  Q  I  G  L  F  F  F  I  Y  I  N  K  S  S  I  S  A  S  T  I  S  T  M  I  S  K  T  S  F  V  L  F  L  I  A  I  A  L  F  L  H  D  V  T  S  I  G  V  N  Y  G  T  L  G  N  N  L  P  P  P  A  Q  V  A  Q  F  I  K  D  K  T  V  I  D  R  V  K  I  F  D  I  N  P  D  I  L  R  A  F  A  N  T  G  I  S  L  T  V  T  V  P  N  G  E  I  P  N  L  L  D  L  A  Y  A  R  R  Y  V  E  Q  N  I  K  P  H  Y  P  Q  T  K  M  D  V  I  L  V  G  N  E  V  L  H  W  D  T  P  E  V  Q  N  K  L  V  P  A  M  K  V  F  Y  Q  A  L  G  L  S  G  L  K  G  I  K  V  S  S  A  H  S  L  G  I  L  L  R  S  N  P  P  S  A  A  R  F  R  P  G  W  D  V  G  I  L  A  P  M  L  Q  F  L  R  E  T  K  G  P  F  M  V  N  P  Y  P  Y  F  G  Y  N  K  K  Q  E  D  F  L  L  F  R  K  N  K  G  V  Y  D  R  F  S  K  K  W  Y  T  N  S  F  D  M  L  L  D  A  V  Y  M  S  M  V  R  L  K  H  S  D  V  E  I  V  A  A  E  T  G  W  P  S  Q  G  E  A  Y  E  P  Q  C  T  V  E  N  A  A  S  Y  N  G  G  L  M  K  K  Y  N  S  G  I  G  T  P  L  M  P  H  R  K  I  E  T  Y  I  F  S  L  F  N  E  N  T  K  P  G  S  I  A  E  R  N  F  G  L  F  R  P  D  F  T  P  V  Y  D  V  G  V  L  K  S  N  Q  :  A  H  P  T  P  S  L  P  P  P  K  T  G  G  G  G  N  K  G  Q  P  K  T  P  A  E  N  K  K  F  C  M  P  K  V  E  A  T  D  A  Q  L  Q  S  N  I  N  Y  V  C  S  Q  G  V  D  C  T  P  I  Q  V  G  G  S  C  F  K  P  N  T  I  R  S  H  A  A  F  A  M  N  S  Y  Y  Q  K  E  G  R  N  N  F  N  C  D  F  A  G  T  G  V  V  A  F  S  D  P   : S  Y  G  T  C  K  F  E  S  *  M  Y  V  K  L  R  M  I  A  S  I  D  L  *  Y  L  *  M  L  C  T  L  V  S  H  I  *  S  N  C  I  G  L  V  C  K  R  S  F  Y  I  L  C  H  L  M  C  L  I  Y  *  F  L  F  S  I  C  F  Q  F  Y  Q  V  I  L  N  I  E  K  Y  I  F  K  N  N  Y  *  F  *  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75376" stop="76482"/>
                    <exon start="78001" stop="78319"/>
                    <exon start="78420" stop="78448"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1452</number_coding_nucleotides>
                  <number_encoded_amino_acids>484</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKFQIGLFFFIYINKSSISASTISTMISKTSFVLFLIAIALFLHDVTSIGVNYGTLGNNLPPPAQVAQFIKDKTVIDRVKIFDINPDILRAFANTGISLTVTVPNGEIPNLLDLAYARRYVEQNIKPHYPQTKMDVILVGNEVLHWDTPEVQNKLVPAMKVFYQALGLSGLKGIKVSSAHSLGILLRSNPPSAARFRPGWDVGILAPMLQFLRETKGPFMVNPYPYFGYNKKQEDFLLFRKNKGVYDRFSKKWYTNSFDMLLDAVYMSMVRLKHSDVEIVAAETGWPSQGEAYEPQCTVENAASYNGGLMKKYNSGIGTPLMPHRKIETYIFSLFNENTKPGSIAERNFGLFRPDFTPVYDVGVLKSNQAHPTPSLPPPKTGGGGNKGQPKTPAENKKFCMPKVEATDAQLQSNINYVCSQGVDCTPIQVGGSCFKPNTIRSHAAFAMNSYYQKEGRNNFNCDFAGTGVVAFSDPSYGTCKFES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="84755" PGL_stop="85735"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84755" e_stop="84773"/>
            <exon e_start="84885" e_stop="85022"/>
            <exon e_start="85505" e_stop="85735"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.809" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84755" e_stop="84773" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.809" acc_prob="1.000">
            <gDNA_intron_boundary i_start="84774" i_stop="84884" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84885" e_stop="85022" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="85023" i_stop="85504" i_length="482"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85505" e_stop="85735" e_length="231"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84755" stop="84773"/>
              <exon start="84885" stop="85022"/>
              <exon start="85505" stop="85735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210553" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTGTGAGGACAGAGCAG : GAATATGATCCAGAAATGCCCCCAGAACTTGCAGCAGCAGCTGGTATGAAAGACATTCCATCGGAAAATTTGAATGGTAAAATTGATGGAACTACAAATGACCTAGGAAGAGGATCAATGCGCATGAGACCACCACTA : ATTGTGTGCCAGGATGATGACCAATACACAGGGAATGACAAGAATGAAGGGCAATTGGACAATATTCCTTCAACAGAGGATTTTAGAGGTGATGCAAGAAGAGGACCCCTGCAGGAACATGTTCAAGAATCTGATGGTTTTCAGAATCCTTATAAGAGCCACAGGCGAGAGGCCAATGCTAGGAGAACACAGTTTATAAACCCTATAGGTGATCATTTAACCAAAGGAGAT</gDNA_template>
            <first_frame> N  C  E  D  R  A   : G  I  *  S  R  N  A  P  R  T  C  S  S  S  W  Y  E  R  H  S  I  G  K  F  E  W  *  N  *  W  N  Y  K  *  P  R  K  R  I  N  A  H  E  T  T  T   : N  C  V  P  G  *  *  P  I  H  R  E  *  Q  E  *  R  A  I  G  Q  Y  S  F  N  R  G  F  *  R  *  C  K  K  R  T  P  A  G  T  C  S  R  I  *  W  F  S  E  S  L  *  E  P  Q  A  R  G  Q  C  *  E  N  T  V  Y  K  P  Y  R  *  S  F  N  Q  R  R  </first_frame>
            <second_frame>  T  V  R  T  E  Q  :  E  Y  D  P  E  M  P  P  E  L  A  A  A  A  G  M  K  D  I  P  S  E  N  L  N  G  K  I  D  G  T  T  N  D  L  G  R  G  S  M  R  M  R  P  P  L  :  I  V  C  Q  D  D  D  Q  Y  T  G  N  D  K  N  E  G  Q  L  D  N  I  P  S  T  E  D  F  R  G  D  A  R  R  G  P  L  Q  E  H  V  Q  E  S  D  G  F  Q  N  P  Y  K  S  H  R  R  E  A  N  A  R  R  T  Q  F  I  N  P  I  G  D  H  L  T  K  G  D </second_frame>
            <third_frame>   L  *  G  Q  S  R :   N  M  I  Q  K  C  P  Q  N  L  Q  Q  Q  L  V  *  K  T  F  H  R  K  I  *  M  V  K  L  M  E  L  Q  M  T  *  E  E  D  Q  C  A  *  D  H  H  * :   L  C  A  R  M  M  T  N  T  Q  G  M  T  R  M  K  G  N  W  T  I  F  L  Q  Q  R  I  L  E  V  M  Q  E  E  D  P  C  R  N  M  F  K  N  L  M  V  F  R  I  L  I  R  A  T  G  E  R  P  M  L  G  E  H  S  L  *  T  L  *  V  I  I  *  P  K  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84756" stop="84773"/>
                    <exon start="84885" stop="85022"/>
                    <exon start="85505" stop="85735"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVRTEQEYDPEMPPELAAAAGMKDIPSENLNGKIDGTTNDLGRGSMRMRPPLIVCQDDDQYTGNDKNEGQLDNIPSTEDFRGDARRGPLQEHVQESDGFQNPYKSHRREANARRTQFINPIGDHLTKGD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="88852" PGL_stop="89487"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88852" e_stop="89487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="88852" e_stop="89487" e_length="636"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88852" stop="89487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88853" stop="89344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247578" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGGTGAAATTAAGTAGGGAACACATTGACAAGGAAGAAACATTCCATTCCCATGGAGAAACTATGGTTCGCAGAAAGCGAGAGAGAGATGATGCCTCAGATCACCGAAAGAGAGATGAGCTGATGAGACTACGAGAAGATGAGCAGCTCTATATCAGGCACAAAGAAGATGGAGTGTTTCAGAGGGAGAGGAATGATAGACAGCGAGAACGTGAGGAGTGGTATAGGCTCAAACAGTCACATGAAGAGACACTACCAAAAAGGGAGAGAGAAGAAATAAGGGGCGGGATGCGGGCTGGACGTGTTCCGGAAGAAAAAGCTTGGGCTGCTCAATCTAGAGGGAAAGATGAGTATAGAAACTCTGATCAGCACTCGAAAGATGTGAGGCATGCTGACCATATTAGAAGGAGGGATCGTGTTGAAAATGAAAGTCCATCGAGGCTGAGGACACGTGAGGATGAAAGAAGAGCAAGGCATGACAGGGTGAACTCACGTGAAGATCGTGCTCCTATTGCTTCAGATAACTCCAGGGTTAATGAGAAAAGACATAAAGATTATTTGAAGAAGGGTAAAGAATTTGAGAGTGATCACAACTCCCAGATGGCTTTGAACATGAACGAAGATGAACTGAATGG</gDNA_template>
            <first_frame> R  G  E  I  K  *  G  T  H  *  Q  G  R  N  I  P  F  P  W  R  N  Y  G  S  Q  K  A  R  E  R  *  C  L  R  S  P  K  E  R  *  A  D  E  T  T  R  R  *  A  A  L  Y  Q  A  Q  R  R  W  S  V  S  E  G  E  E  *  *  T  A  R  T  *  G  V  V  *  A  Q  T  V  T  *  R  D  T  T  K  K  G  E  R  R  N  K  G  R  D  A  G  W  T  C  S  G  R  K  S  L  G  C  S  I  *  R  E  R  *  V  *  K  L  *  S  A  L  E  R  C  E  A  C  *  P  Y  *  K  E  G  S  C  *  K  *  K  S  I  E  A  E  D  T  *  G  *  K  K  S  K  A  *  Q  G  E  L  T  *  R  S  C  S  Y  C  F  R  *  L  Q  G  *  *  E  K  T  *  R  L  F  E  E  G  *  R  I  *  E  *  S  Q  L  P  D  G  F  E  H  E  R  R  *  T  E  W </first_frame>
            <second_frame>  E  V  K  L  S  R  E  H  I  D  K  E  E  T  F  H  S  H  G  E  T  M  V  R  R  K  R  E  R  D  D  A  S  D  H  R  K  R  D  E  L  M  R  L  R  E  D  E  Q  L  Y  I  R  H  K  E  D  G  V  F  Q  R  E  R  N  D  R  Q  R  E  R  E  E  W  Y  R  L  K  Q  S  H  E  E  T  L  P  K  R  E  R  E  E  I  R  G  G  M  R  A  G  R  V  P  E  E  K  A  W  A  A  Q  S  R  G  K  D  E  Y  R  N  S  D  Q  H  S  K  D  V  R  H  A  D  H  I  R  R  R  D  R  V  E  N  E  S  P  S  R  L  R  T  R  E  D  E  R  R  A  R  H  D  R  V  N  S  R  E  D  R  A  P  I  A  S  D  N  S  R  V  N  E  K  R  H  K  D  Y  L  K  K  G  K  E  F  E  S  D  H  N  S  Q  M  A  L  N  M  N  E  D  E  L  N   </second_frame>
            <third_frame>   R  *  N  *  V  G  N  T  L  T  R  K  K  H  S  I  P  M  E  K  L  W  F  A  E  S  E  R  E  M  M  P  Q  I  T  E  R  E  M  S  *  *  D  Y  E  K  M  S  S  S  I  S  G  T  K  K  M  E  C  F  R  G  R  G  M  I  D  S  E  N  V  R  S  G  I  G  S  N  S  H  M  K  R  H  Y  Q  K  G  R  E  K  K  *  G  A  G  C  G  L  D  V  F  R  K  K  K  L  G  L  L  N  L  E  G  K  M  S  I  E  T  L  I  S  T  R  K  M  *  G  M  L  T  I  L  E  G  G  I  V  L  K  M  K  V  H  R  G  *  G  H  V  R  M  K  E  E  Q  G  M  T  G  *  T  H  V  K  I  V  L  L  L  L  Q  I  T  P  G  L  M  R  K  D  I  K  I  I  *  R  R  V  K  N  L  R  V  I  T  T  P  R  W  L  *  T  *  T  K  M  N  *  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88853" stop="89485"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVKLSREHIDKEETFHSHGETMVRRKRERDDASDHRKRDELMRLREDEQLYIRHKEDGVFQRERNDRQREREEWYRLKQSHEETLPKREREEIRGGMRAGRVPEEKAWAAQSRGKDEYRNSDQHSKDVRHADHIRRRDRVENESPSRLRTREDERRARHDRVNSREDRAPIASDNSRVNEKRHKDYLKKGKEFESDHNSQMALNMNEDELN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="91985" PGL_stop="92819"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91985" e_stop="92620"/>
            <exon e_start="92810" e_stop="92819"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91985" e_stop="92620" e_length="636"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="92621" i_stop="92809" i_length="189"/>
          </intron>
          <exon e_serial="2" e_score="0.600">
            <gDNA_exon_boundary e_start="92810" e_stop="92819" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91985" stop="92620"/>
              <exon start="92810" stop="92819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397833" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACATGAAAGACAGCAATGTACACAAGGGCACCGGTACTTCATTAGCTAACAAAAATCAAGATGAAGCTTTAAAGATGGTCGAAGAAAATCAACAACCTGCAGCTAACTATAAAAATGGAGGTGCCCCTGAGATTAATAGCCTAGAAACAAAGCCTGTGGAGGATAAACATTTGGAGACAGTTGAGAAGTTGAAGAAGCGTAGTGAGCGCTTCAAGCTTCCAATGCCAAGTGAGAAAGAAGCTCCAGTAAGTAAAAAGGTGGAAGGTGATCCATTATCCTCAGTTCAAAGCGAAACCCCTCCAGATTCAGAGGTGAAGCCAGAGCGTCCAGCACGCAGGAGGAGATGGACAAGCAGTTAAATGAGGAATTCAAGGAACATCTTTGTTTGATGGCTTATTTCCTACTCATGGAGTATATGCCCTCCTTGGCTAATGTTTTACCAATGTGCTTGTCAACTTAAGGAAGCCTGTACTGCTGTTGTCTATTCTGGATCTGAGGTTTGTGTAGACCTCCCATAGTAGATTTGGGTATCTGTAACCATGTTCAGATTATCTATTTGGTTTTCTTATTTCTGTAATACATGTATATACCAGTAAGCCTAACATCATAGTGGCCCATTGTTGGGGTGCCAGAA : GAATCAAAAC</gDNA_template>
            <first_frame> E  H  E  R  Q  Q  C  T  Q  G  H  R  Y  F  I  S  *  Q  K  S  R  *  S  F  K  D  G  R  R  K  S  T  T  C  S  *  L  *  K  W  R  C  P  *  D  *  *  P  R  N  K  A  C  G  G  *  T  F  G  D  S  *  E  V  E  E  A  *  *  A  L  Q  A  S  N  A  K  *  E  R  S  S  S  K  *  K  G  G  R  *  S  I  I  L  S  S  K  R  N  P  S  R  F  R  G  E  A  R  A  S  S  T  Q  E  E  M  D  K  Q  L  N  E  E  F  K  E  H  L  C  L  M  A  Y  F  L  L  M  E  Y  M  P  S  L  A  N  V  L  P  M  C  L  S  T  *  G  S  L  Y  C  C  C  L  F  W  I  *  G  L  C  R  P  P  I  V  D  L  G  I  C  N  H  V  Q  I  I  Y  L  V  F  L  F  L  *  Y  M  Y  I  P  V  S  L  T  S  *  W  P  I  V  G  V  P  E  :  E  S  K  </first_frame>
            <second_frame>  N  M  K  D  S  N  V  H  K  G  T  G  T  S  L  A  N  K  N  Q  D  E  A  L  K  M  V  E  E  N  Q  Q  P  A  A  N  Y  K  N  G  G  A  P  E  I  N  S  L  E  T  K  P  V  E  D  K  H  L  E  T  V  E  K  L  K  K  R  S  E  R  F  K  L  P  M  P  S  E  K  E  A  P  V  S  K  K  V  E  G  D  P  L  S  S  V  Q  S  E  T  P  P  D  S  E  V  K  P  E  R  P  A  R  R  R  R  W  T  S  S  *  M  R  N  S  R  N  I  F  V  *  W  L  I  S  Y  S  W  S  I  C  P  P  W  L  M  F  Y  Q  C  A  C  Q  L  K  E  A  C  T  A  V  V  Y  S  G  S  E  V  C  V  D  L  P  *  *  I  W  V  S  V  T  M  F  R  L  S  I  W  F  S  Y  F  C  N  T  C  I  Y  Q  *  A  *  H  H  S  G  P  L  L  G  C  Q  K :   N  Q  N </second_frame>
            <third_frame>   T  *  K  T  A  M  Y  T  R  A  P  V  L  H  *  L  T  K  I  K  M  K  L  *  R  W  S  K  K  I  N  N  L  Q  L  T  I  K  M  E  V  P  L  R  L  I  A  *  K  Q  S  L  W  R  I  N  I  W  R  Q  L  R  S  *  R  S  V  V  S  A  S  S  F  Q  C  Q  V  R  K  K  L  Q  *  V  K  R  W  K  V  I  H  Y  P  Q  F  K  A  K  P  L  Q  I  Q  R  *  S  Q  S  V  Q  H  A  G  G  D  G  Q  A  V  K  *  G  I  Q  G  T  S  L  F  D  G  L  F  P  T  H  G  V  Y  A  L  L  G  *  C  F  T  N  V  L  V  N  L  R  K  P  V  L  L  L  S  I  L  D  L  R  F  V  *  T  S  H  S  R  F  G  Y  L  *  P  C  S  D  Y  L  F  G  F  L  I  S  V  I  H  V  Y  T  S  K  P  N  I  I  V  A  H  C  W  G  A  R   : R  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91986" stop="92345"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMKDSNVHKGTGTSLANKNQDEALKMVEENQQPAANYKNGGAPEINSLETKPVEDKHLETVEKLKKRSERFKLPMPSEKEAPVSKKVEGDPLSSVQSETPPDSEVKPERPARRRRWTSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="99451" PGL_stop="100203"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99451" e_stop="100203"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="99451" e_stop="100203" e_length="753"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99451" stop="100203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577666" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGAGCCTCAGGAGAAAGAATTAGCCGAAAGATGCTTGAAGTCTTGTGAATTCCCTTTTGTTAGGTCAGCCTATAAAAGGCAAGAATGAGGCAGCAGAGAGTATGGGATTTCTATCAAGGGTGGTTGGCCTTCTCTCTATGCTTTGCTTATGATTCTCCATTTCTCAAAACAAACCAACAGCCCTTCAAAAGAAAGAGACAGAGAGAGTACAATTGAGTTTCTGGGTTTATTTGCAGTTTGCACCACCCTTAAGACATATGTATACACAACTATACTACAACTATAAAATGACTATGAAAACTATTAAAGAGGCAGTGATGATTTCTGGGCTAGCAAGATTTCGGGCATGGAGAGTACCCAACCCGTACCTTGGCATGACAACACGGTATGGCCTGTAATTGAGACGCATAACTCACACATGCAATCGTGCGTTGCAGCCATGGCATGGCTGGCTTCTCTTTTTCCTCGTCATTACACAAATCTGAGCCTCAATTTGCTAAAGAAAAAAAGGGAAAATGATCAAATTTGCCCCTTTACTATGCATAAGGGGCAATATCTTTTCCATGATCAAAGTGGGAGATATTGAGGTCTTCTCGTTTTAAGCTCTCATACAAGCAAATTCCATCTATTAGGTTTGCCCAGAAATAGAGAGAATGAGGCTGCAGAGAGAGTATGGGATTTCTTTCAAGGGTGGTTGCCCCTGTCTGCTTTGCCTATGATTCTCCCCTTCTCAACAAACCAACAGCCTTTA</gDNA_template>
            <first_frame> S  E  P  Q  E  K  E  L  A  E  R  C  L  K  S  C  E  F  P  F  V  R  S  A  Y  K  R  Q  E  *  G  S  R  E  Y  G  I  S  I  K  G  G  W  P  S  L  Y  A  L  L  M  I  L  H  F  S  K  Q  T  N  S  P  S  K  E  R  D  R  E  S  T  I  E  F  L  G  L  F  A  V  C  T  T  L  K  T  Y  V  Y  T  T  I  L  Q  L  *  N  D  Y  E  N  Y  *  R  G  S  D  D  F  W  A  S  K  I  S  G  M  E  S  T  Q  P  V  P  W  H  D  N  T  V  W  P  V  I  E  T  H  N  S  H  M  Q  S  C  V  A  A  M  A  W  L  A  S  L  F  P  R  H  Y  T  N  L  S  L  N  L  L  K  K  K  R  E  N  D  Q  I  C  P  F  T  M  H  K  G  Q  Y  L  F  H  D  Q  S  G  R  Y  *  G  L  L  V  L  S  S  H  T  S  K  F  H  L  L  G  L  P  R  N  R  E  N  E  A  A  E  R  V  W  D  F  F  Q  G  W  L  P  L  S  A  L  P  M  I  L  P  F  S  T  N  Q  Q  P  L </first_frame>
            <second_frame>  L  S  L  R  R  K  N  *  P  K  D  A  *  S  L  V  N  S  L  L  L  G  Q  P  I  K  G  K  N  E  A  A  E  S  M  G  F  L  S  R  V  V  G  L  L  S  M  L  C  L  *  F  S  I  S  Q  N  K  P  T  A  L  Q  K  K  E  T  E  R  V  Q  L  S  F  W  V  Y  L  Q  F  A  P  P  L  R  H  M  Y  T  Q  L  Y  Y  N  Y  K  M  T  M  K  T  I  K  E  A  V  M  I  S  G  L  A  R  F  R  A  W  R  V  P  N  P  Y  L  G  M  T  T  R  Y  G  L  *  L  R  R  I  T  H  T  C  N  R  A  L  Q  P  W  H  G  W  L  L  F  F  L  V  I  T  Q  I  *  A  S  I  C  *  R  K  K  G  K  M  I  K  F  A  P  L  L  C  I  R  G  N  I  F  S  M  I  K  V  G  D  I  E  V  F  S  F  *  A  L  I  Q  A  N  S  I  Y  *  V  C  P  E  I  E  R  M  R  L  Q  R  E  Y  G  I  S  F  K  G  G  C  P  C  L  L  C  L  *  F  S  P  S  Q  Q  T  N  S  L   </second_frame>
            <third_frame>   *  A  S  G  E  R  I  S  R  K  M  L  E  V  L  *  I  P  F  C  *  V  S  L  *  K  A  R  M  R  Q  Q  R  V  W  D  F  Y  Q  G  W  L  A  F  S  L  C  F  A  Y  D  S  P  F  L  K  T  N  Q  Q  P  F  K  R  K  R  Q  R  E  Y  N  *  V  S  G  F  I  C  S  L  H  H  P  *  D  I  C  I  H  N  Y  T  T  T  I  K  *  L  *  K  L  L  K  R  Q  *  *  F  L  G  *  Q  D  F  G  H  G  E  Y  P  T  R  T  L  A  *  Q  H  G  M  A  C  N  *  D  A  *  L  T  H  A  I  V  R  C  S  H  G  M  A  G  F  S  F  S  S  S  L  H  K  S  E  P  Q  F  A  K  E  K  K  G  K  *  S  N  L  P  L  Y  Y  A  *  G  A  I  S  F  P  *  S  K  W  E  I  L  R  S  S  R  F  K  L  S  Y  K  Q  I  P  S  I  R  F  A  Q  K  *  R  E  *  G  C  R  E  S  M  G  F  L  S  R  V  V  A  P  V  C  F  A  Y  D  S  P  L  L  N  K  P  T  A  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99760" stop="100038"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGSDDFWASKISGMESTQPVPWHDNTVWPVIETHNSHMQSCVAAMAWLASLFPRHYTNLSLNLLKKKRENDQICPFTMHKGQYLFHDQSGRY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99605" stop="99850"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSISQNKPTALQKKETERVQLSFWVYLQFAPPLRHMYTQLYYNYKMTMKTIKEAVMISGLARFRAWRVPNPYLGMTTRYGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99541" stop="99738"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSREYGISIKGGWPSLYALLMILHFSKQTNSPSKERDRESTIEFLGLFAVCTTLKTYVYTTILQL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="100541" PGL_stop="100852"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100541" e_stop="100852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100541" e_stop="100852" e_length="312"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100541" stop="100852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311554" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTTTGCAGCCATGGCGAGACTGGCTTCTCTTTTGCCATATCATTACATACATCTGAGCCACAATTTGTTGAAGAACATAAGTAGGCATTTGGACATTATTGCAGTTAAATTCTCTTAAATGCAGACTTGTGACGTCTCGTCAGTTAGAAGCTCTAATCTAAACGAACTTCCTTCTTTTAGCAGGAATGACGAGTATGAGGCAGCAGAGAGTATGGGATTTCTTTCAAGGGTGGTTGCCCCTCTCTACTTTGCCTATGATTCTACCCTTCTCAACAAACCAACAGCCCTTAAGAAAAGAAAAAAGAGAAAA</gDNA_template>
            <first_frame> C  F  A  A  M  A  R  L  A  S  L  L  P  Y  H  Y  I  H  L  S  H  N  L  L  K  N  I  S  R  H  L  D  I  I  A  V  K  F  S  *  M  Q  T  C  D  V  S  S  V  R  S  S  N  L  N  E  L  P  S  F  S  R  N  D  E  Y  E  A  A  E  S  M  G  F  L  S  R  V  V  A  P  L  Y  F  A  Y  D  S  T  L  L  N  K  P  T  A  L  K  K  R  K  K  R  K </first_frame>
            <second_frame>  V  L  Q  P  W  R  D  W  L  L  F  C  H  I  I  T  Y  I  *  A  T  I  C  *  R  T  *  V  G  I  W  T  L  L  Q  L  N  S  L  K  C  R  L  V  T  S  R  Q  L  E  A  L  I  *  T  N  F  L  L  L  A  G  M  T  S  M  R  Q  Q  R  V  W  D  F  F  Q  G  W  L  P  L  S  T  L  P  M  I  L  P  F  S  T  N  Q  Q  P  L  R  K  E  K  R  E   </second_frame>
            <third_frame>   F  C  S  H  G  E  T  G  F  S  F  A  I  S  L  H  T  S  E  P  Q  F  V  E  E  H  K  *  A  F  G  H  Y  C  S  *  I  L  L  N  A  D  L  *  R  L  V  S  *  K  L  *  S  K  R  T  S  F  F  *  Q  E  *  R  V  *  G  S  R  E  Y  G  I  S  F  K  G  G  C  P  S  L  L  C  L  *  F  Y  P  S  Q  Q  T  N  S  P  *  E  K  K  K  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100661" stop="100852"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MQTCDVSSVRSSNLNELPSFSRNDEYEAAESMGFLSRVVAPLYFAYDSTLLNKPTALKKRKKRK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="103921" PGL_stop="104660"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103921" e_stop="104660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103921" e_stop="104660" e_length="740"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103921" stop="104567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103932" stop="104512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103934" stop="104446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103937" stop="104554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103937" stop="104373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103942" stop="104512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103942" stop="104512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104191" stop="104660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267886" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104353" stop="104660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335997" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGTTAGCCCAGAAAAGAAAAAAGAGGCAAAACAGAGAGTTTTTGGATTTTATTAACAAGGGTGGTTGCCCCTCTCTTGTTTAGCCTATGAATGATTCTTTTAGAGATGAAGCAACAACCCTTGAATTCATGTTAATTTCCTGGGAATTATTGGAACATGCATGCCATACATACATACATACAACAAACATACATATATTCCTCAACTTTCCAATTCTACATCTATGCCATTCTCTTTTTTGTTAATTAATTACTCACTCTTTGTTGGTGTTTGATCTATTGAGGCTGTGATGATGATGATGATGGGCTAACCGGATCGGGCTTGGAGATTATGCGACTCGTATCTTGGCTTGGCAAATTTTGCAGCCATGGCGTGGTCGTCTCTCTCTTTGTTCCGATCTCTTTGCAGATCTGAGCCTTTTGGACACATGCATGTGTTTCTGGGAAATGACTGAATTATTGAACATGGAAAATTAAACCTTTTCTTCAACTTCAACAACTATGGTTACAAACTCTGTTTCTTCTGTGTTTTTTTTTATCCAAATAATGAGAGGCGATGATGAAGATAATGATTTCTTTGGATTCTGGGCTAATCGGGTCGGGTATGAAGATTATACGACCCGTATCTTGGCTTGGCAAATTTTGCAGCCATGGCGTGGTCGGCTCTCTTCTACCTCGATTTCTTTTGCAGATCTGAGCCTCTAAATTCATAATGAATAACTTTTGGATTCATACAAAA</gDNA_template>
            <first_frame> K  V  S  P  E  K  K  K  E  A  K  Q  R  V  F  G  F  Y  *  Q  G  W  L  P  L  S  C  L  A  Y  E  *  F  F  *  R  *  S  N  N  P  *  I  H  V  N  F  L  G  I  I  G  T  C  M  P  Y  I  H  T  Y  N  K  H  T  Y  I  P  Q  L  S  N  S  T  S  M  P  F  S  F  L  L  I  N  Y  S  L  F  V  G  V  *  S  I  E  A  V  M  M  M  M  M  G  *  P  D  R  A  W  R  L  C  D  S  Y  L  G  L  A  N  F  A  A  M  A  W  S  S  L  S  L  F  R  S  L  C  R  S  E  P  F  G  H  M  H  V  F  L  G  N  D  *  I  I  E  H  G  K  L  N  L  F  F  N  F  N  N  Y  G  Y  K  L  C  F  F  C  V  F  F  Y  P  N  N  E  R  R  *  *  R  *  *  F  L  W  I  L  G  *  S  G  R  V  *  R  L  Y  D  P  Y  L  G  L  A  N  F  A  A  M  A  W  S  A  L  F  Y  L  D  F  F  C  R  S  E  P  L  N  S  *  *  I  T  F  G  F  I  Q   </first_frame>
            <second_frame>  R  L  A  Q  K  R  K  K  R  Q  N  R  E  F  L  D  F  I  N  K  G  G  C  P  S  L  V  *  P  M  N  D  S  F  R  D  E  A  T  T  L  E  F  M  L  I  S  W  E  L  L  E  H  A  C  H  T  Y  I  H  T  T  N  I  H  I  F  L  N  F  P  I  L  H  L  C  H  S  L  F  C  *  L  I  T  H  S  L  L  V  F  D  L  L  R  L  *  *  *  *  *  W  A  N  R  I  G  L  G  D  Y  A  T  R  I  L  A  W  Q  I  L  Q  P  W  R  G  R  L  S  L  C  S  D  L  F  A  D  L  S  L  L  D  T  C  M  C  F  W  E  M  T  E  L  L  N  M  E  N  *  T  F  S  S  T  S  T  T  M  V  T  N  S  V  S  S  V  F  F  F  I  Q  I  M  R  G  D  D  E  D  N  D  F  F  G  F  W  A  N  R  V  G  Y  E  D  Y  T  T  R  I  L  A  W  Q  I  L  Q  P  W  R  G  R  L  S  S  T  S  I  S  F  A  D  L  S  L  *  I  H  N  E  *  L  L  D  S  Y  K  </second_frame>
            <third_frame>   G  *  P  R  K  E  K  R  G  K  T  E  S  F  W  I  L  L  T  R  V  V  A  P  L  L  F  S  L  *  M  I  L  L  E  M  K  Q  Q  P  L  N  S  C  *  F  P  G  N  Y  W  N  M  H  A  I  H  T  Y  I  Q  Q  T  Y  I  Y  S  S  T  F  Q  F  Y  I  Y  A  I  L  F  F  V  N  *  L  L  T  L  C  W  C  L  I  Y  *  G  C  D  D  D  D  D  G  L  T  G  S  G  L  E  I  M  R  L  V  S  W  L  G  K  F  C  S  H  G  V  V  V  S  L  F  V  P  I  S  L  Q  I  *  A  F  W  T  H  A  C  V  S  G  K  *  L  N  Y  *  T  W  K  I  K  P  F  L  Q  L  Q  Q  L  W  L  Q  T  L  F  L  L  C  F  F  L  S  K  *  *  E  A  M  M  K  I  M  I  S  L  D  S  G  L  I  G  S  G  M  K  I  I  R  P  V  S  W  L  G  K  F  C  S  H  G  V  V  G  S  L  L  P  R  F  L  L  Q  I  *  A  S  K  F  I  M  N  N  F  W  I  H  T  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104399" stop="104626"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFSSTSTTMVTNSVSSVFFFIQIMRGDDEDNDFFGFWANRVGYEDYTTRILAWQILQPWRGRLSSTSISFADLSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="104660" PGL_stop="103941"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104660" e_stop="103941"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="104660" e_stop="103941" e_length="720"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104660" stop="103941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371833" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGTATGAATCCAAAAGTTATTCATTATGAATTTAGAGGCTCAGATCTGCAAAAGAAATCGAGGTAGAAGAGAGCCGACCACGCCATGGCTGCAAAATTTGCCAAGCCAAGATACGGGTCGTATAATCTTCATACCCGACCCGATTAGCCCAGAATCCAAAGAAATCATTATCTTCATCATCGCCTCTCATTATTTGGATAAAAAAAAACACAGAAGAAACAGAGTTTGTAACCATAGTTGTTGAAGTTGAAGAAAAGGTTTAATTTTCCATGTTCAATAATTCAGTCATTTCCCAGAAACACATGCATGTGTCCAAAAGGCTCAGATCTGCAAAGAGATCGGAACAAAGAGAGAGACGACCACGCCATGGCTGCAAAATTTGCCAAGCCAAGATACGAGTCGCATAATCTCCAAGCCCGATCCGGTTAGCCCATCATCATCATCATCACAGCCTCAATAGATCAAACACCAACAAAGAGTGAGTAATTAATTAACAAAAAAGAGAATGGCATAGATGTAGAATTGGAAAGTTGAGGAATATATGTATGTTTGTTGTATGTATGTATGTATGGCATGCATGTTCCAATAATTCCCAGGAAATTAACATGAATTCAAGGGTTGTTGCTTCATCTCTAAAAGAATCATTCATAGGCTAAACAAGAGAGGGGCAACCACCCTTGTTAATAAAATCCAAAAACTCTCTGTTTTGCCTCTTTT</gDNA_template>
            <first_frame> F  C  M  N  P  K  V  I  H  Y  E  F  R  G  S  D  L  Q  K  K  S  R  *  K  R  A  D  H  A  M  A  A  K  F  A  K  P  R  Y  G  S  Y  N  L  H  T  R  P  D  *  P  R  I  Q  R  N  H  Y  L  H  H  R  L  S  L  F  G  *  K  K  T  Q  K  K  Q  S  L  *  P  *  L  L  K  L  K  K  R  F  N  F  P  C  S  I  I  Q  S  F  P  R  N  T  C  M  C  P  K  G  S  D  L  Q  R  D  R  N  K  E  R  D  D  H  A  M  A  A  K  F  A  K  P  R  Y  E  S  H  N  L  Q  A  R  S  G  *  P  I  I  I  I  I  T  A  S  I  D  Q  T  P  T  K  S  E  *  L  I  N  K  K  E  N  G  I  D  V  E  L  E  S  *  G  I  Y  V  C  L  L  Y  V  C  M  Y  G  M  H  V  P  I  I  P  R  K  L  T  *  I  Q  G  L  L  L  H  L  *  K  N  H  S  *  A  K  Q  E  R  G  N  H  P  C  *  *  N  P  K  T  L  C  F  A  S  F </first_frame>
            <second_frame>  F  V  *  I  Q  K  L  F  I  M  N  L  E  A  Q  I  C  K  R  N  R  G  R  R  E  P  T  T  P  W  L  Q  N  L  P  S  Q  D  T  G  R  I  I  F  I  P  D  P  I  S  P  E  S  K  E  I  I  I  F  I  I  A  S  H  Y  L  D  K  K  K  H  R  R  N  R  V  C  N  H  S  C  *  S  *  R  K  G  L  I  F  H  V  Q  *  F  S  H  F  P  E  T  H  A  C  V  Q  K  A  Q  I  C  K  E  I  G  T  K  R  E  T  T  T  P  W  L  Q  N  L  P  S  Q  D  T  S  R  I  I  S  K  P  D  P  V  S  P  S  S  S  S  S  Q  P  Q  *  I  K  H  Q  Q  R  V  S  N  *  L  T  K  K  R  M  A  *  M  *  N  W  K  V  E  E  Y  M  Y  V  C  C  M  Y  V  C  M  A  C  M  F  Q  *  F  P  G  N  *  H  E  F  K  G  C  C  F  I  S  K  R  I  I  H  R  L  N  K  R  G  A  T  T  L  V  N  K  I  Q  K  L  S  V  L  P  L   </second_frame>
            <third_frame>   L  Y  E  S  K  S  Y  S  L  *  I  *  R  L  R  S  A  K  E  I  E  V  E  E  S  R  P  R  H  G  C  K  I  C  Q  A  K  I  R  V  V  *  S  S  Y  P  T  R  L  A  Q  N  P  K  K  S  L  S  S  S  S  P  L  I  I  W  I  K  K  N  T  E  E  T  E  F  V  T  I  V  V  E  V  E  E  K  V  *  F  S  M  F  N  N  S  V  I  S  Q  K  H  M  H  V  S  K  R  L  R  S  A  K  R  S  E  Q  R  E  R  R  P  R  H  G  C  K  I  C  Q  A  K  I  R  V  A  *  S  P  S  P  I  R  L  A  H  H  H  H  H  H  S  L  N  R  S  N  T  N  K  E  *  V  I  N  *  Q  K  R  E  W  H  R  C  R  I  G  K  L  R  N  I  C  M  F  V  V  C  M  Y  V  W  H  A  C  S  N  N  S  Q  E  I  N  M  N  S  R  V  V  A  S  S  L  K  E  S  F  I  G  *  T  R  E  G  Q  P  P  L  L  I  K  S  K  N  S  L  F  C  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104650" stop="104414"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQKLFIMNLEAQICKRNRGRREPTTPWLQNLPSQDTGRIIFIPDPISPESKEIIIFIIASHYLDKKKHRRNRVCNHSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="114071" PGL_stop="114827"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114071" e_stop="114827"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="114071" e_stop="114827" e_length="757"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114071" stop="114827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344160" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTTGTGTATCTAATGCATTGTGCATATGTTTCGGTTGTCGGTCCTCACTGGCTCTGTTTCAATGCAATGCAAACAGAGTACATGTTCATAATGCCAGCAAGAGGAAACAATGAGGCTATGATGATAGTTTTGCTGAGCTCTTTGAGTCGGGCATAAGAGTTCTGTAGCTGCTGTGGCGGGGCAATCTGAATTTCTGGAAATTTGCAGCTATGGCTGGGCACAAAGAACTCAAAGCCCGAAGACATAATCTGAGCCTCTTGCATCATTTCTCCATTACCAAAACCAACAGCCCTCTTCTAGTCCTTTTCCTTTCTTCACTATAGAAAACAGAGGGAGCATTAACATCAGCAGCAGCAGCAGCAGTAGTTGGACCTCATTCTGATTTATGAGCTCAGGTCCAAAGCATCTCAAATTCCCCGAATCCTATGCTACCAGAATCAACGAAGCAGATGATATTTGCTTATCTTGGCTTAAAAAAAGGTTGTTCGGGTTTACAGACAAGTAGATCTGTATCTTGGCTTGGCAAAAACCCATGATGGTATGTGATTTGAGACTCCTCGATCACATGCAACTGGTTCTTTTGCAGCTATGGCGTTGTCTCCTCTCTCTCTTTGACCATTCATTAGTAGCCAGCTGCGAGTGTCAAAATTGCCAGTAATTCTTCTGGACATTGTTTGATGGGGAAATCGTTAAATGAGACATCATTGATGAGAAATGTGAATAATTTATTTTTTGATTCGGTTTTGCTGGTAAG</gDNA_template>
            <first_frame> F  L  V  Y  L  M  H  C  A  Y  V  S  V  V  G  P  H  W  L  C  F  N  A  M  Q  T  E  Y  M  F  I  M  P  A  R  G  N  N  E  A  M  M  I  V  L  L  S  S  L  S  R  A  *  E  F  C  S  C  C  G  G  A  I  *  I  S  G  N  L  Q  L  W  L  G  T  K  N  S  K  P  E  D  I  I  *  A  S  C  I  I  S  P  L  P  K  P  T  A  L  F  *  S  F  S  F  L  H  Y  R  K  Q  R  E  H  *  H  Q  Q  Q  Q  Q  Q  *  L  D  L  I  L  I  Y  E  L  R  S  K  A  S  Q  I  P  R  I  L  C  Y  Q  N  Q  R  S  R  *  Y  L  L  I  L  A  *  K  K  V  V  R  V  Y  R  Q  V  D  L  Y  L  G  L  A  K  T  H  D  G  M  *  F  E  T  P  R  S  H  A  T  G  S  F  A  A  M  A  L  S  P  L  S  L  *  P  F  I  S  S  Q  L  R  V  S  K  L  P  V  I  L  L  D  I  V  *  W  G  N  R  *  M  R  H  H  *  *  E  M  *  I  I  Y  F  L  I  R  F  C  W  *  </first_frame>
            <second_frame>  F  L  C  I  *  C  I  V  H  M  F  R  L  S  V  L  T  G  S  V  S  M  Q  C  K  Q  S  T  C  S  *  C  Q  Q  E  E  T  M  R  L  *  *  *  F  C  *  A  L  *  V  G  H  K  S  S  V  A  A  V  A  G  Q  S  E  F  L  E  I  C  S  Y  G  W  A  Q  R  T  Q  S  P  K  T  *  S  E  P  L  A  S  F  L  H  Y  Q  N  Q  Q  P  S  S  S  P  F  P  F  F  T  I  E  N  R  G  S  I  N  I  S  S  S  S  S  S  S  W  T  S  F  *  F  M  S  S  G  P  K  H  L  K  F  P  E  S  Y  A  T  R  I  N  E  A  D  D  I  C  L  S  W  L  K  K  R  L  F  G  F  T  D  K  *  I  C  I  L  A  W  Q  K  P  M  M  V  C  D  L  R  L  L  D  H  M  Q  L  V  L  L  Q  L  W  R  C  L  L  S  L  F  D  H  S  L  V  A  S  C  E  C  Q  N  C  Q  *  F  F  W  T  L  F  D  G  E  I  V  K  *  D  I  I  D  E  K  C  E  *  F  I  F  *  F  G  F  A  G  K </second_frame>
            <third_frame>   S  C  V  S  N  A  L  C  I  C  F  G  C  R  S  S  L  A  L  F  Q  C  N  A  N  R  V  H  V  H  N  A  S  K  R  K  Q  *  G  Y  D  D  S  F  A  E  L  F  E  S  G  I  R  V  L  *  L  L  W  R  G  N  L  N  F  W  K  F  A  A  M  A  G  H  K  E  L  K  A  R  R  H  N  L  S  L  L  H  H  F  S  I  T  K  T  N  S  P  L  L  V  L  F  L  S  S  L  *  K  T  E  G  A  L  T  S  A  A  A  A  A  V  V  G  P  H  S  D  L  *  A  Q  V  Q  S  I  S  N  S  P  N  P  M  L  P  E  S  T  K  Q  M  I  F  A  Y  L  G  L  K  K  G  C  S  G  L  Q  T  S  R  S  V  S  W  L  G  K  N  P  *  W  Y  V  I  *  D  S  S  I  T  C  N  W  F  F  C  S  Y  G  V  V  S  S  L  S  L  T  I  H  *  *  P  A  A  S  V  K  I  A  S  N  S  S  G  H  C  L  M  G  K  S  L  N  E  T  S  L  M  R  N  V  N  N  L  F  F  D  S  V  L  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0002D20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="119646" PGL_stop="121216"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119646" e_stop="119765"/>
            <exon e_start="119850" e_stop="120002"/>
            <exon e_start="120318" e_stop="120397"/>
            <exon e_start="120711" e_stop="120760"/>
            <exon e_start="120871" e_stop="121216"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.966" e_score="0.992"/>
          <exon-intron don_prob="0.830" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="119646" e_stop="119765" e_length="120"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.966">
            <gDNA_intron_boundary i_start="119766" i_stop="119849" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119850" e_stop="120002" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.830" acc_prob="0.986">
            <gDNA_intron_boundary i_start="120003" i_stop="120317" i_length="315"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120318" e_stop="120397" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="120398" i_stop="120710" i_length="313"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120711" e_stop="120760" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.958" acc_prob="1.000">
            <gDNA_intron_boundary i_start="120761" i_stop="120870" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="120871" e_stop="121216" e_length="346"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119646" stop="119765"/>
              <exon start="119850" stop="120002"/>
              <exon start="120318" stop="120397"/>
              <exon start="120711" stop="120760"/>
              <exon start="120871" stop="121000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119882" stop="120002"/>
              <exon start="120318" stop="120397"/>
              <exon start="120711" stop="120760"/>
              <exon start="120871" stop="121216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371962" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119883" stop="120002"/>
              <exon start="120318" stop="120397"/>
              <exon start="120711" stop="120760"/>
              <exon start="120871" stop="121208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282629" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAAGCTTAGCAAGGCATTTGCTGCAGCAAGTTTATATTACAATTATACACAAACAGAAAAATGTTTCAATTTAGAAGGTGGTACTGATTCTCATGGTCTTCATGGTTGGGATTGGCAG : GCATGTACAGAGATGGTTATGCCAATGACTTGTTCAAATGAAAGTATGTTTCCTCCATCTTCCTTTAGCTACAAGGAATTCTCAAAAGATTGTAAGAAGCAATTTGGAGTAAAACCTAGACCACATTGGATCACTACTGAATTTGGTGGCTAT : AGAATTGAGCAAGTTCTCAAGAGATTTGGCAGCAACATGATATTCTCTAATGGAATGCAAGATCCTTGGAGCAGAGGAGG : TGTATTGAAAAATATATCATCTAGCATTGTGGCTTTGGTAACTCAGAAAG : GTGCACACCATGTTGACTTTAGATCAGAGACAAAGAATGACCCAGACTGGTTAATTATGCAAAGGAAGCAAGAAGTGGCTATTATTGAAAAGTGGCTAGAAGAGTACTATAAAGATCTCAAACAAAATTAGATACAATATGAATATAGTGTCACTTTAGACACATCATGTAATGGACATTATTGTGGAAGAAAATAAAAAGGTGTCATAAATTAAATTGAATTATATTAATTTGAGTTTTATTTCTATAGGTTAATCTTTTGAAAAAAAATATATACGAGATATATATGTATTTTGAATAGGTATATATTTTTAATATACTTATCTAAATTTTCACTACTTTACTA</gDNA_template>
            <first_frame> S  K  L  S  K  A  F  A  A  A  S  L  Y  Y  N  Y  T  Q  T  E  K  C  F  N  L  E  G  G  T  D  S  H  G  L  H  G  W  D  W  Q  :  A  C  T  E  M  V  M  P  M  T  C  S  N  E  S  M  F  P  P  S  S  F  S  Y  K  E  F  S  K  D  C  K  K  Q  F  G  V  K  P  R  P  H  W  I  T  T  E  F  G  G  Y  :  R  I  E  Q  V  L  K  R  F  G  S  N  M  I  F  S  N  G  M  Q  D  P  W  S  R  G  G :   V  L  K  N  I  S  S  S  I  V  A  L  V  T  Q  K   : G  A  H  H  V  D  F  R  S  E  T  K  N  D  P  D  W  L  I  M  Q  R  K  Q  E  V  A  I  I  E  K  W  L  E  E  Y  Y  K  D  L  K  Q  N  *  I  Q  Y  E  Y  S  V  T  L  D  T  S  C  N  G  H  Y  C  G  R  K  *  K  G  V  I  N  *  I  E  L  Y  *  F  E  F  Y  F  Y  R  L  I  F  *  K  K  I  Y  T  R  Y  I  C  I  L  N  R  Y  I  F  L  I  Y  L  S  K  F  S  L  L  Y   </first_frame>
            <second_frame>  Q  S  L  A  R  H  L  L  Q  Q  V  Y  I  T  I  I  H  K  Q  K  N  V  S  I  *  K  V  V  L  I  L  M  V  F  M  V  G  I  G  R :   H  V  Q  R  W  L  C  Q  *  L  V  Q  M  K  V  C  F  L  H  L  P  L  A  T  R  N  S  Q  K  I  V  R  S  N  L  E  *  N  L  D  H  I  G  S  L  L  N  L  V  A  I :   E  L  S  K  F  S  R  D  L  A  A  T  *  Y  S  L  M  E  C  K  I  L  G  A  E  E   : V  Y  *  K  I  Y  H  L  A  L  W  L  W  *  L  R  K  :  V  H  T  M  L  T  L  D  Q  R  Q  R  M  T  Q  T  G  *  L  C  K  G  S  K  K  W  L  L  L  K  S  G  *  K  S  T  I  K  I  S  N  K  I  R  Y  N  M  N  I  V  S  L  *  T  H  H  V  M  D  I  I  V  E  E  N  K  K  V  S  *  I  K  L  N  Y  I  N  L  S  F  I  S  I  G  *  S  F  E  K  K  Y  I  R  D  I  Y  V  F  *  I  G  I  Y  F  *  Y  T  Y  L  N  F  H  Y  F  T  </second_frame>
            <third_frame>   K  A  *  Q  G  I  C  C  S  K  F  I  L  Q  L  Y  T  N  R  K  M  F  Q  F  R  R  W  Y  *  F  S  W  S  S  W  L  G  L  A   : G  M  Y  R  D  G  Y  A  N  D  L  F  K  *  K  Y  V  S  S  I  F  L  *  L  Q  G  I  L  K  R  L  *  E  A  I  W  S  K  T  *  T  T  L  D  H  Y  *  I  W  W  L   : *  N  *  A  S  S  Q  E  I  W  Q  Q  H  D  I  L  *  W  N  A  R  S  L  E  Q  R  R  :  C  I  E  K  Y  I  I  *  H  C  G  F  G  N  S  E  R :   C  T  P  C  *  L  *  I  R  D  K  E  *  P  R  L  V  N  Y  A  K  E  A  R  S  G  Y  Y  *  K  V  A  R  R  V  L  *  R  S  Q  T  K  L  D  T  I  *  I  *  C  H  F  R  H  I  M  *  W  T  L  L  W  K  K  I  K  R  C  H  K  L  N  *  I  I  L  I  *  V  L  F  L  *  V  N  L  L  K  K  N  I  Y  E  I  Y  M  Y  F  E  *  V  Y  I  F  N  I  L  I  *  I  F  T  T  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119646" stop="119765"/>
                    <exon start="119850" stop="120002"/>
                    <exon start="120318" stop="120397"/>
                    <exon start="120711" stop="120760"/>
                    <exon start="120871" stop="121001"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKLSKAFAAASLYYNYTQTEKCFNLEGGTDSHGLHGWDWQACTEMVMPMTCSNESMFPPSSFSYKEFSKDCKKQFGVKPRPHWITTEFGGYRIEQVLKRFGSNMIFSNGMQDPWSRGGVLKNISSSIVALVTQKGAHHVDFRSETKNDPDWLIMQRKQEVAIIEKWLEEYYKDLKQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="121740" PGL_stop="126869"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121740" e_stop="122104"/>
            <exon e_start="125440" e_stop="125463"/>
            <exon e_start="126379" e_stop="126869"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121740" e_stop="122104" e_length="365"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.996">
            <gDNA_intron_boundary i_start="122105" i_stop="125439" i_length="3335"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="125440" e_stop="125463" e_length="24"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.986">
            <gDNA_intron_boundary i_start="125464" i_stop="126378" i_length="915"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="126379" e_stop="126869" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121740" stop="122104"/>
              <exon start="125440" stop="125463"/>
              <exon start="126379" stop="126606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121740" stop="122104"/>
              <exon start="125440" stop="125463"/>
              <exon start="126379" stop="126510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121754" stop="122104"/>
              <exon start="125440" stop="125463"/>
              <exon start="126379" stop="126500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121878" stop="122104"/>
              <exon start="125440" stop="125463"/>
              <exon start="126379" stop="126559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121883" stop="122104"/>
              <exon start="125440" stop="125463"/>
              <exon start="126379" stop="126807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126485" stop="126869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299660" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTACTGTAAGACCTTCAAGAAAGTAGATGGAAAGTAGCAGTACTAGTTAATTAATCAGCACTTATTTTCAGCTGAACATCTTTAACAATTTGAAAAATCCCAATTAACCCCATAACAGTAGATCCATTTTGCCTTGTAGATCTCACTCCCAATTTGCTCTCAAAGCAAAAAGGAAACATGGCAAGGCAATCTGGGAATTGCTTAAGATGTTGTTTAGTAATTTTTGCTGTAGTTTCTGCTCTTTGTGTATCTGGTCCTGCTATTTATTGGAAGTTCAAGAAACTTAAAGTTAAAGCTGCTCAATCTTGTATGCCTTGTAAATGTGACTGTTCTCCTCCTCTTTCTTTGCTTGAAGTTGCTCCTG : GCTTGGCGAATCTTACAATCACAG : ACTGCGGAAAAGATGATCCGGACCTTAAGGAGGAGATGGAGAAACAGTTCGTTGATTTATTATCGGAAGAGCTGAAACTGCAGGAGGCTGTTGACAAGGAGCACGCCCATCATATGAACATCACCTTTGTGGAGGCGAGGAGGTTAGCTACCGAGTACCAAAAGGAGGCTGAGAAATGCATTGCTACAACGGAAACTTGTGAAGTCGGGAGAGAAAGAGCTGTTGTGTTGTATGCCAAGGAAATGAAGTTGACTAACCTTTGGGAACGCAGAGCGCGCCAAGCTGGTTGGAAAGACTGAATGCAAAAATGAAGTTTTCATCACACTAGCTCAAATTTTGTTGTCCGCTATGTAGCTTTATGCTAGTTATATTTCTCTGTATGAGCACAAAATTGCTCATATTTCTTCATCTAATATATGTATTTTACCTGCTCTCCTGTGTACCTTGCCATTATCATATGAAATATAAACTTCCCCACTATAGTTTCTATG</gDNA_template>
            <first_frame> F  T  V  R  P  S  R  K  *  M  E  S  S  S  T  S  *  L  I  S  T  Y  F  Q  L  N  I  F  N  N  L  K  N  P  N  *  P  H  N  S  R  S  I  L  P  C  R  S  H  S  Q  F  A  L  K  A  K  R  K  H  G  K  A  I  W  E  L  L  K  M  L  F  S  N  F  C  C  S  F  C  S  L  C  I  W  S  C  Y  L  L  E  V  Q  E  T  *  S  *  S  C  S  I  L  Y  A  L  *  M  *  L  F  S  S  S  F  F  A  *  S  C  S  W :   L  G  E  S  Y  N  H  R :   L  R  K  R  *  S  G  P  *  G  G  D  G  E  T  V  R  *  F  I  I  G  R  A  E  T  A  G  G  C  *  Q  G  A  R  P  S  Y  E  H  H  L  C  G  G  E  E  V  S  Y  R  V  P  K  G  G  *  E  M  H  C  Y  N  G  N  L  *  S  R  E  R  K  S  C  C  V  V  C  Q  G  N  E  V  D  *  P  L  G  T  Q  S  A  P  S  W  L  E  R  L  N  A  K  M  K  F  S  S  H  *  L  K  F  C  C  P  L  C  S  F  M  L  V  I  F  L  C  M  S  T  K  L  L  I  F  L  H  L  I  Y  V  F  Y  L  L  S  C  V  P  C  H  Y  H  M  K  Y  K  L  P  H  Y  S  F  Y  </first_frame>
            <second_frame>  L  L  *  D  L  Q  E  S  R  W  K  V  A  V  L  V  N  *  S  A  L  I  F  S  *  T  S  L  T  I  *  K  I  P  I  N  P  I  T  V  D  P  F  C  L  V  D  L  T  P  N  L  L  S  K  Q  K  G  N  M  A  R  Q  S  G  N  C  L  R  C  C  L  V  I  F  A  V  V  S  A  L  C  V  S  G  P  A  I  Y  W  K  F  K  K  L  K  V  K  A  A  Q  S  C  M  P  C  K  C  D  C  S  P  P  L  S  L  L  E  V  A  P   : G  L  A  N  L  T  I  T   : D  C  G  K  D  D  P  D  L  K  E  E  M  E  K  Q  F  V  D  L  L  S  E  E  L  K  L  Q  E  A  V  D  K  E  H  A  H  H  M  N  I  T  F  V  E  A  R  R  L  A  T  E  Y  Q  K  E  A  E  K  C  I  A  T  T  E  T  C  E  V  G  R  E  R  A  V  V  L  Y  A  K  E  M  K  L  T  N  L  W  E  R  R  A  R  Q  A  G  W  K  D  *  M  Q  K  *  S  F  H  H  T  S  S  N  F  V  V  R  Y  V  A  L  C  *  L  Y  F  S  V  *  A  Q  N  C  S  Y  F  F  I  *  Y  M  Y  F  T  C  S  P  V  Y  L  A  I  I  I  *  N  I  N  F  P  T  I  V  S  M </second_frame>
            <third_frame>   Y  C  K  T  F  K  K  V  D  G  K  *  Q  Y  *  L  I  N  Q  H  L  F  S  A  E  H  L  *  Q  F  E  K  S  Q  L  T  P  *  Q  *  I  H  F  A  L  *  I  S  L  P  I  C  S  Q  S  K  K  E  T  W  Q  G  N  L  G  I  A  *  D  V  V  *  *  F  L  L  *  F  L  L  F  V  Y  L  V  L  L  F  I  G  S  S  R  N  L  K  L  K  L  L  N  L  V  C  L  V  N  V  T  V  L  L  L  F  L  C  L  K  L  L  L  :  A  W  R  I  L  Q  S  Q  :  T  A  E  K  M  I  R  T  L  R  R  R  W  R  N  S  S  L  I  Y  Y  R  K  S  *  N  C  R  R  L  L  T  R  S  T  P  I  I  *  T  S  P  L  W  R  R  G  G  *  L  P  S  T  K  R  R  L  R  N  A  L  L  Q  R  K  L  V  K  S  G  E  K  E  L  L  C  C  M  P  R  K  *  S  *  L  T  F  G  N  A  E  R  A  K  L  V  G  K  T  E  C  K  N  E  V  F  I  T  L  A  Q  I  L  L  S  A  M  *  L  Y  A  S  Y  I  S  L  Y  E  H  K  I  A  H  I  S  S  S  N  I  C  I  L  P  A  L  L  C  T  L  P  L  S  Y  E  I  *  T  S  P  L  *  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121834" stop="122104"/>
                    <exon start="125440" stop="125463"/>
                    <exon start="126379" stop="126677"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIPINPITVDPFCLVDLTPNLLSKQKGNMARQSGNCLRCCLVIFAVVSALCVSGPAIYWKFKKLKVKAAQSCMPCKCDCSPPLSLLEVAPGLANLTITDCGKDDPDLKEEMEKQFVDLLSEELKLQEAVDKEHAHHMNITFVEARRLATEYQKEAEKCIATTETCEVGRERAVVLYAKEMKLTNLWERRARQAGWKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="122406" e_stop="122862"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="122406" e_stop="122862" e_length="457"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122406" stop="122862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324764" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCGAGTTTATGAGTTTTAGATTCTAGATGAGGTATAATGTAACCCCACCAGTGGGGTCTGGGGAGATTTTTGAGCGTATGCAGACCTTATCTCTACCGGAGGACGGAGGTAGAGAGACTGTTTTCGATAGACCTTAGGCTCAAGAAAAAAGAATTAACAGGAGTAAGTAAGTCATGTCAAAATACTATAAGAGATTCTAGAAATATAGCGGATCCAGATAAATTACTTGTACGTATTTTAGTGGATTTGTAAGCATAAAATAGTGGATTTGAACCAAAACTATCAAGAAACTTCACAGCAGCGCCTCCCCTGCTGAGCTGTCGTATGGACATCAATACTTGCTTATTTGGTTTTTTCTCATGTTGACCATTGGATTATGTGTTTATAATGTTAGATTGGCTGTAGATTTTCTGTTGTATGTGAAGAGTTTATTAAGTAACCTCTTAATTATCATG</gDNA_template>
            <first_frame> F  R  V  Y  E  F  *  I  L  D  E  V  *  C  N  P  T  S  G  V  W  G  D  F  *  A  Y  A  D  L  I  S  T  G  G  R  R  *  R  D  C  F  R  *  T  L  G  S  R  K  K  N  *  Q  E  *  V  S  H  V  K  I  L  *  E  I  L  E  I  *  R  I  Q  I  N  Y  L  Y  V  F  *  W  I  C  K  H  K  I  V  D  L  N  Q  N  Y  Q  E  T  S  Q  Q  R  L  P  C  *  A  V  V  W  T  S  I  L  A  Y  L  V  F  S  H  V  D  H  W  I  M  C  L  *  C  *  I  G  C  R  F  S  V  V  C  E  E  F  I  K  *  P  L  N  Y  H  </first_frame>
            <second_frame>  F  E  F  M  S  F  R  F  *  M  R  Y  N  V  T  P  P  V  G  S  G  E  I  F  E  R  M  Q  T  L  S  L  P  E  D  G  G  R  E  T  V  F  D  R  P  *  A  Q  E  K  R  I  N  R  S  K  *  V  M  S  K  Y  Y  K  R  F  *  K  Y  S  G  S  R  *  I  T  C  T  Y  F  S  G  F  V  S  I  K  *  W  I  *  T  K  T  I  K  K  L  H  S  S  A  S  P  A  E  L  S  Y  G  H  Q  Y  L  L  I  W  F  F  L  M  L  T  I  G  L  C  V  Y  N  V  R  L  A  V  D  F  L  L  Y  V  K  S  L  L  S  N  L  L  I  I  M </second_frame>
            <third_frame>   S  S  L  *  V  L  D  S  R  *  G  I  M  *  P  H  Q  W  G  L  G  R  F  L  S  V  C  R  P  Y  L  Y  R  R  T  E  V  E  R  L  F  S  I  D  L  R  L  K  K  K  E  L  T  G  V  S  K  S  C  Q  N  T  I  R  D  S  R  N  I  A  D  P  D  K  L  L  V  R  I  L  V  D  L  *  A  *  N  S  G  F  E  P  K  L  S  R  N  F  T  A  A  P  P  L  L  S  C  R  M  D  I  N  T  C  L  F  G  F  F  S  C  *  P  L  D  Y  V  F  I  M  L  D  W  L  *  I  F  C  C  M  *  R  V  Y  *  V  T  S  *  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122450" stop="122659"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHQWGLGRFLSVCRPYLYRRTEVERLFSIDLRLKKKELTGVSKSCQNTIRDSRNIADPDKLLVRILVDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="126805" PGL_stop="126387"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126805" e_stop="126387"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="126805" e_stop="126387" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126805" stop="126387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303596" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAAAATACATATATTAGATGAAGAAATATGAGCAATTTTGTGCTCATACAGAGAAATATAACTAGCATAAAGCTACATAGCGGACAACAAAATTTGAGCTAGTGTGATGAAAACTTCATTTTTGCATTCAGTCTTTCCAACCAGCTTGGCGCGCTCTGCGTTCCCAAAGGTTAGTCAACTTCATTTCCTTGGCATACAACACAACAGCTCTTTCTCTCCCGACTTCACAAGTTTCCGTTGTAGCAATGCATTTCTCAGCCTCCTTTTGGTACTCGGTAGCTAACCTCCTCGCCTCCACAAAGGTGATGTTCATATGATGGGCGTGCTCCTTGTCAACAGCCTCCTGCAGTTTCAGCTCTTCCGATAATAAATCAACGAACTGTTTCTCCATCTCCTCCTTAAGGTCCGGATCATCTTT</gDNA_template>
            <first_frame> V  K  Y  I  Y  *  M  K  K  Y  E  Q  F  C  A  H  T  E  K  Y  N  *  H  K  A  T  *  R  T  T  K  F  E  L  V  *  *  K  L  H  F  C  I  Q  S  F  Q  P  A  W  R  A  L  R  S  Q  R  L  V  N  F  I  S  L  A  Y  N  T  T  A  L  S  L  P  T  S  Q  V  S  V  V  A  M  H  F  S  A  S  F  W  Y  S  V  A  N  L  L  A  S  T  K  V  M  F  I  *  W  A  C  S  L  S  T  A  S  C  S  F  S  S  S  D  N  K  S  T  N  C  F  S  I  S  S  L  R  S  G  S  S   </first_frame>
            <second_frame>  *  N  T  Y  I  R  *  R  N  M  S  N  F  V  L  I  Q  R  N  I  T  S  I  K  L  H  S  G  Q  Q  N  L  S  *  C  D  E  N  F  I  F  A  F  S  L  S  N  Q  L  G  A  L  C  V  P  K  G  *  S  T  S  F  P  W  H  T  T  Q  Q  L  F  L  S  R  L  H  K  F  P  L  *  Q  C  I  S  Q  P  P  F  G  T  R  *  L  T  S  S  P  P  Q  R  *  C  S  Y  D  G  R  A  P  C  Q  Q  P  P  A  V  S  A  L  P  I  I  N  Q  R  T  V  S  P  S  P  P  *  G  P  D  H  L  </second_frame>
            <third_frame>   K  I  H  I  L  D  E  E  I  *  A  I  L  C  S  Y  R  E  I  *  L  A  *  S  Y  I  A  D  N  K  I  *  A  S  V  M  K  T  S  F  L  H  S  V  F  P  T  S  L  A  R  S  A  F  P  K  V  S  Q  L  H  F  L  G  I  Q  H  N  S  S  F  S  P  D  F  T  S  F  R  C  S  N  A  F  L  S  L  L  L  V  L  G  S  *  P  P  R  L  H  K  G  D  V  H  M  M  G  V  L  L  V  N  S  L  L  Q  F  Q  L  F  R  *  *  I  N  E  L  F  L  H  L  L  L  K  V  R  I  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0002D20.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126694" stop="126488"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLHFCIQSFQPAWRALRSQRLVNFISLAYNTTALSLPTSQVSVVAMHFSASFWYSVANLLASTKVMFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 194 chains have been computed
$ 
$ memory statistics:
$ 684920 bytes spliced alignments in total
$ 143 spliced alignments have been stored
$ 4789 bytes was the average size of a spliced alignment
$ 35744 bytes predicted gene locations in total
$ 24 predicted gene locations have been stored
$ 1489 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 224 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-13 17:58:04
-->
