<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-09 17:02:20"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0011E08-NNGZy/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/xeuKWFhXtG" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/xeuKWFhXtG" ref_id="SGN-U331176" ref_strand="+" ref_description="SGN-U331176        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT2G42990.1 | Symbol: None | GDSL-motif lipase/hydrolase family protein, similar to  family II lipase EXL3 (GI:15054386), EXL1 (GI:15054382), EXL2 (GI:15054384) (Arabidopsis thaliana); contains Pfam profile PF00657: Lipase/Acylhydrolase with GDSL-like motif | chr2:17886121-17887631 FORWARD | Aliases: F23E6.2, F23E6_2 (evalue: 2e-64, score=242) genbank/nr: gi|42569882|ref|NP_181827.2| GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana](evalue: 1e-62, score=242)">
      <seq>cattaataatctcaacaaactcttcatcccacccaattttatcacgcatataaactaaaatcaccaaattcactcaaaatcccagctccacaatgacttattacactctgatgagtataattctaagtcattatttgttactagtgactaaaacattggctggaaaagttccagcaattatagtgttcggcgattcgtcggtcgattcagggaataacaaccagatctccaccgttctaaagagcaatttcgaaccgtacggccgcgatttctacgataaaaaggcaactggtaggttctgcaatgggcgaattccaccggattttatatcggaaggttttgggctgaggccatttgttccagcttatttagatccggcgtttagtatatctgattttgcacaaggtgtttgttttgcttctgctggtactggttatgataatgccacttctcatgtgctcaatgtgataccattatggaaggaagtggagtactacaaagaatatcaaaagaaactaaaagcatacgcaggtaaaaagaaatcgaaatacataataaaagagtcactctatttaatcagcattggaacaaatgacttcttggaaaattactactcaatgcaaagccaacgttcttctcaatacacagaagatcaatttcaagattttcttcttcaacttgctcggaacttcgtgcaccaaatttatcgcatgggtgctaggaaaatttcgttaactggagttcctccaatgggttgtttgccattggaaagagcaacaaattatgtaggtgggaaatggagatggatgcaatgagaaatataaaaatgttgctaagcattttaatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0011E08-NNGZy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0011E08.1" temp_strand="-" temp_description="C07HBa0011E08.1  AC232643.1 htgs_phase:1 submitted_to_sgn_as:gi|205831293|gb|AC232643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0011E08, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="7657" stop="4988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7357" g_stop="6897" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6896" i_stop="5676" i_length="1221">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5675" g_stop="5288" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="850" r_length="389" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0011E08.1" gen_strand="-" ref_id="SGN-U331176" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0011E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7357" e_stop="6897"/>
          <exon e_start="5675" e_stop="5288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTAATAATCTCAACAAACTCTTCATCCCACCCAATTTTATCACGCATATAAACTAAAATCACCAAATTCACTCAAAATCCCAGCTCCACAATGACTTATTACACTCTGATGAGTATAATTCTAAGTCATTATTTGTTACTAGTGACTAAAACATTGGCTGGAAAAGTTCCAGCAATTATAGTGTTCGGCGATTCGTCGGTCGATTCAGGGAATAACAACCAGATCTCCACCGTTCTAAAGAGCAATTTCGAACCGTACGGCCGCGATTTCTACGATAAAAAGGCAACTGGTAGGTTCTGCAATGGGCGAATTCCACCGGATTTTATATCGGAAGGTTTTGGGCTGAGGCCATTTGTTCCAGCTTATTTAGATCCGGCGTTTAGTATATCTGATTTTGCACAAGGTGTTTGTTTTGCTTCTGCTGGTACTGGTTATGATAATGCCACTTCTCATGTGCTCGTAAGCTTTCATCAACCCCTTTCCAATTTTAACTGATACTTTCGGTTCAGAATTGTGTTTTTGGAGAGTGAATTTGATTAACTTTTAAAAATAAATTTGATCATATTAATTTGATATTTTAAATAAAAAAATTAAATATTTTAAAACTATATAAGAACTGCTATAAATTACAACTTCTTTTGCATATTAATATGATAAAAAAAAATATCTTAAAATGTTAATCAAATTTTTTATAATTTGATTCTAAAAATAAAAATTATGACAAATAATATCGGACGAAAAAAAATATTCTTCTATTCTTTCAAAGGACGTCTCAATAAAATTAATACAAGAGTCAACTATGTATAACACGTGTTTACATTTATTTGCCAATTTGGTTAACGGAATCGTGGTGCTAGGAAAATTTCCTCGATAATGTACCAAATTAGATTTTGAGCTTTAAGTCATATTTTAAAAATTAGTATTCTCTTCGCTTCATTTTATATGACTCCATTTTCTTTTTTGTCAGTTTTAAAAAAGTATCATTTTTTCTTATATAATAAGTATTTAAAGGTATAGTTACTTTTTTATTTTTATTGATTTCATTTAATTTTAAAGATAATACTCCAATACACTTACGAGGAGAGAAAAAAGTGAGTCTACTTTTTTACATTTTTGAAGGACAATTTGTTGAACATTTCAAAGTCTTCATTTATTTCTTATACTCTGTGTCCAATCAAATATTGTGACATAAAATGAGACGCGGAGAGAGTAGTTCAAAATAAGAATTGTCCAAACTTTATAAGGAGATTATCCATCTCAATCATCAATGCAAAACTACCTTTTGGGGTGGCCAATGTTTTGACTTGGGATTTTCACGTTGGAGATCTTAAGTTCAAAACTCCTAGGAATTTGCTTACTGGATCGAGCTCATCGCACTGGACTTGTCTATAGTGGGTTACCTTTTCTATGTCATTTGTGAGTTATTGCGTAGCACAACCAAACCAAAAGATAGTAACTGCGAATTTCCTTGTCATAGAAAATAAAATCATCAATGCAGAACTGTTTTCATTATATTTGGTGCATGACAAATTATAATTTTTGGACCTAACAATCAGTAAAATGGGTCCTGCTCAAGCTCTTGAGCCTAATTTAAACTTCAAAAATTAAGAGGACTGTTCAAACTTTAATACTATGCGATAGATTATGATGTGATTTGACCGTGTAAAAATTATTTTGCAGAATGTGATACCATTATGGAAGGAAGTGGAGTACTACAAAGAATATCAAAAGAAACTAAAAGCATACGCAGGTAAAAAGAAATCGAAATACATAATAAAAGAGTCACTCTATTTAATCAGCATTGGAACAAATGACTTCTTGGAAAATTACTACTCAATGCAAAGCCAACGTTCTTCTCAATACACAGAAGATCAATTTCAAGATTTTCTTCTTCAACTTGCTCGGAACTTCGTGCACCAAATTTATCGCATGGGTGCTAGGAAAATTTCGTTAACTGGAGTTCCTCCAATGGGTTGTTTGCCATTGGAAAGAGCAACAAATTATGTAGGT-GGAAATGGAGATGGATGCAATGAGAAATATAATAATGTTGCTAAGCATTTTAATGTTA</genome_strand>
        <mrna_strand>CATTAATAATCTCAACAAACTCTTCATCCCACCCAATTTTATCACGCATATAAACTAAAATCACCAAATTCACTCAAAATCCCAGCTCCACAATGACTTATTACACTCTGATGAGTATAATTCTAAGTCATTATTTGTTACTAGTGACTAAAACATTGGCTGGAAAAGTTCCAGCAATTATAGTGTTCGGCGATTCGTCGGTCGATTCAGGGAATAACAACCAGATCTCCACCGTTCTAAAGAGCAATTTCGAACCGTACGGCCGCGATTTCTACGATAAAAAGGCAACTGGTAGGTTCTGCAATGGGCGAATTCCACCGGATTTTATATCGGAAGGTTTTGGGCTGAGGCCATTTGTTCCAGCTTATTTAGATCCGGCGTTTAGTATATCTGATTTTGCACAAGGTGTTTGTTTTGCTTCTGCTGGTACTGGTTATGATAATGCCACTTCTCATGTGCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGATACCATTATGGAAGGAAGTGGAGTACTACAAAGAATATCAAAAGAAACTAAAAGCATACGCAGGTAAAAAGAAATCGAAATACATAATAAAAGAGTCACTCTATTTAATCAGCATTGGAACAAATGACTTCTTGGAAAATTACTACTCAATGCAAAGCCAACGTTCTTCTCAATACACAGAAGATCAATTTCAAGATTTTCTTCTTCAACTTGCTCGGAACTTCGTGCACCAAATTTATCGCATGGGTGCTAGGAAAATTTCGTTAACTGGAGTTCCTCCAATGGGTTGTTTGCCATTGGAAAGAGCAACAAATTATGTAGGTGGGAAATGGAGATGGATGCAATGAGAAATATAAAAATGTTGCTAAGCATTTTAATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/xeuKWFhXtG" ref_id="SGN-U332756" ref_strand="+" ref_description="SGN-U332756        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>cccaccccaacccctatccccatacaccagtggttatcttcttccccatcattctaatgatttcaaaattcttagtatcagtggttatcttcttcccccaccattctaatggtttcaaaattcttagcattttgtttcatttataaatttttcgaagagattcttttccccatctttctctacctaaaaaacgagatgaagtaaaaagttataattaataaaagctgatgaaaaaaaaatttgtagggttaaagatagaactgtacagggagggggggtcgccattaatggagttaaagaaaatgtatgttttgttccagttgaaggcagggaggtgtttaggttttactttttttttaaattttttttactttaaaataatttttattttttttactttataatataatgtttaaataattttttggattaaaaaataacacatgtcattatttgattggtcaaattgacatgtcagcgcgagtgtatttcacacattctctattttttgtttattctcgaaaaaatgttcaaatgattcaaattcagaatggttgaagtgttcaataggtagtacgtctagttgaggtgtctaaatgaataatcgggacaagtttgagtggccgcatatgactttggcctattttattctaccgttggttacgaatatttattagtatatataggaatccaccattaanggaatatatatatatatatatatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0011E08-NNGZy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0011E08.1" temp_strand="-" temp_description="C07HBa0011E08.1  AC232643.1 htgs_phase:1 submitted_to_sgn_as:gi|205831293|gb|AC232643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0011E08, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="8853" stop="7594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8553" g_stop="7894" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0011E08.1" gen_strand="-" ref_id="SGN-U332756" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0011E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8553" e_stop="7894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCCCAACCCCCATACCCATACACCAGTGGTTATCTTCTTCCCCCATCATTCTAATGATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCCCACCGTTCTAATGGTTTCAAAATTCTTAGCATTTTGTTTCATTTATAAATTTTTCGAAAAGATTCTTTTACCCATCTTTCTCTACCAAAAAAAGGAGATGAAGTCAAAAGTTATAATTAATATAAAAGATGATGAAAAAAAAAATTTTCGGGTTAAAGATGGAACTGTACAAGAAGGGGGGGGGGGTGTCGCCATTAATAGAGTTAGAGGAAATGTATGTTTTGTTCCGGTTGAAGGCAGGAAAGTGGGTGTTTAGGTTTTACTTTTTTTTTTCTTCATTTTTTTTACTTTAAAATAATTTTTGTTTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGTGAGTGTATTTCACACATTCTCTACTTTTTATTTATTCTCGAAAAAATGTTCAAATAGTTCAAATTCAGAATGGTTGAAGTGTTCAATAGGTTTTACGTCTAGTTAAAGTATCTAAATGAATAATCGAAACAAATTTGAGTGGCCGCATATGACTTTGGCCTA</genome_strand>
        <mrna_strand>CCCACCCCAACCCCTATCCCCATACACCAGTGGTTATCTTCTTCCCC-ATCATTCTAATGATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAAATTCTTAGCATTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATT-A-ATAAAAGCTGATGAAAAAAAAATTTGTAGGGTTAAAGATAGAACTGTAC----A-GGGAGGGGGG-GTCGCCATTAATGGAGTTAAAGAAAATGTATGTTTTGTTCCAGTTGAAGGCAGG---G-AGGTGTTTAGGTTTTAC--TTTTTTTT-TAAATTTTTTTTACTTTAAAATAATTTTT-ATTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGATTCAAATTCAGAATGGTTGAAGTGTTCAATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGCCGCATATGACTTTGGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/xeuKWFhXtG" ref_id="SGN-U332559" ref_strand="+" ref_description="SGN-U332559        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT2G42990.1 | Symbol: None | GDSL-motif lipase/hydrolase family protein, similar to  family II lipase EXL3 (GI:15054386), EXL1 (GI:15054382), EXL2 (GI:15054384) (Arabidopsis thaliana); contains Pfam profile PF00657: Lipase/Acylhydrolase with GDSL-like motif | chr2:17886121-17887631 FORWARD | Aliases: F23E6.2, F23E6_2 (evalue: 4e-48, score=186) genbank/nr: gi|21593518|gb|AAM65485.1| putative GDSL-motif lipase/hydrolase [Arabidopsis thaliana](evalue: 3e-46, score=186)">
      <seq>aattatttttcatgttacctgctaaagcaaatgtgaaaattccagcgataattgtatttggcgattcatcagtcgattcaggcaataacaatcatattcagacgatcgctcggagcaattttatgccgtacggacgggattttgcggggggtcgaccgaccggtcgattttctaacgggagaattacgactgattttatatcggaggcagctggtttgaaacaaattgttccagcatatttggatccagcttataatatgtctgattttgctgttggagttagttttgcttctgctggaactggatatgataatgctactgctgatgttctgggtgtgatacccttgtggaaacaagtggagtactacaaagaataccaaaagaaactaagagcttatcttggtgatacaaaggccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0011E08-NNGZy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0011E08.1" temp_strand="-" temp_description="C07HBa0011E08.1  AC232643.1 htgs_phase:1 submitted_to_sgn_as:gi|205831293|gb|AC232643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0011E08, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="17102" stop="14319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16802" g_stop="16471" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16470" i_stop="14707" i_length="1764">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14706" g_stop="14619" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="420" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0011E08.1" gen_strand="-" ref_id="SGN-U332559" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0011E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16802" e_stop="16471"/>
          <exon e_start="14706" e_stop="14619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTTTTCATGTTACTTGCTAAAGCAAACGCGAAAATTCCAGCGATAATTGTATTTGGCGATTCATCAGTGGATTCAGGCAATAACAATCATATTCAGACGATTGCTCGGAGCAATTTTATGCCGTACGGACGGGATTTTGCGGGGGGTCGACCGACCGGTCGATTTTCTAACGGGAGAATTACGACTGATTTTATTTCGGAGGCAGCTGGTTTGAAACAAATTGTTCCAGCATATTTGGATCCAGCTTATAATATGTCTGATTTTGCTGTTGGAGTTAGTTTTGCTTCTGCTGGAACTGGATATGATAATGCTACTGCTGATGTTCTGGTAATTTTACGATACATTTTTCTTTTTAGTCGATTTTTAAAAAAATATCTAATGATATTATTAACTTTTTACTAATGTTTAATGCTATTTATTTCACAAAAAGTCGACTAAGGTGTGTTCTTCTGTTTTATTATTCATTTAATTTAAGGATAGTTTGAGAACGTTACAAAAATTTTCTATATTTTTTAAACTTCTTTCTCAGTTAAACTATGAAATGTATGGAGGAAATGAAGAATGTAAACAAAGTCTCGTGTGCTAAAAGTTATATAGTGAAGAACAAATAATTAAGTGGTTTTAGCCAAGTTTAATATAAGCTGATTACACTGGCTTATGTTATACTTTTAAACTTATTTAGTCGTATGGTAAAACACTCAAAATGTTTTTATACGCTAAAAATCTGAAATCAATTTAGAACAACTTTGGGTTAATTTTCTGTTTTTAAGCTTTTTTGGTTTGATCAAATATTTTACTAGTAATATTTTTTCTAATTCTCAAAAAGGAAAAGTGACAAATATATCCTTAACTATCGTAAATGGTAATGCATATATCCTTCATTATACTTTTGGAATATTGGTGCCCCTGCCATTCAAAAACTAGAGTATTTATGCCTTTCACTCTAACGGAAGACTAAATAGGGACACTTGAAGCAATTTTGTCCGTTGATCAAATATTTAATAAATGTCGTGTCGGTGGATAAAATTATGATACGTGTATGTTTGATAGTACAAAAGGTATATATGCTCTAACTTTTGGACGGCAAGGGCACCAATGTCCCAAAAATATGACGAGAAATATCTGCATACCATTTATTATAGTTCAAAAATATTTGTCCTTTTTTCGAATCAAAATACTCTTTCCATAATAGAACTAGATGTCTCCCTCACCTAGTTCAATCTTTTGTTGTTTGTTATTCTCCTTGACTCCTTATAATTTGGTATAAATAAGACATATTTTTGAAAATCAAATTCATCAACTATTTATCATCAATTCAACACTTCAAAGTAATTATGTGATCATTTGTCTATAAAACTAGTTTGATCAGTCCAAAAAGAATTTTTCTAACTTTTAATACTTTATCACCTACTTTCAACCAACTAATTCATATTAGCTCTAAATTACGTATACAAATACTCTTGGTTGCTACCTTTTGGAAAATAGTAATAAGCTAGGTCTAAAAAGAATAATATATTATATTCTGTTATTAATTTCTTTAAGTTGACTTAGTCCAATAAGATCGTGTTGGTTATTTGGGAGTTAATAGTAGTTTGACGTGAGCATAAGATTTAATTATTAGTAAGAAATAAATAGTCTTTTATGACAAAAGCTATAAATATATGCAAGGCACCAAAACTACCCTTACCGTTAAGAGTTAAATGAAAAATGTGAAGTGTTCACATGTCACTTCCATATTGTCTCCCATATTAAAACATAACCTTATATCCCATGTCCCAAGAAGTTATATACACAGAGAAAATTCAAATGAAAATGCTAAGATAATTAAAAAGAAAAAAAGTGTTATGTTGTTGTCAGGGTCTATCTGGTACAGTTTTTCTATCTTCACAAGATAGTGATAAAATTGCGTACACACCACCCCTCCACATACCTCACTCCCTACCATTTGTGGAGTATCAACGTATGTTGTTGTAAAAAGCTAAAGAAAAAGTGTCACATAAAACGTGACAAATGAAATAGTATTTGATGGATCATTGATAATATCCTACCATGTTTTATGAGAATTCTCACCCCATGATCCTAAAATTGCAGGGTGTGATACCCTTGTGGAAACAAGTGGAGTACTACAAAGAATACCAAAAGAAACTAAGAGCTTATCTTGGTGATACAAAGGCCAATG</genome_strand>
        <mrna_strand>AATTATTTTTCATGTTACCTGCTAAAGCAAATGTGAAAATTCCAGCGATAATTGTATTTGGCGATTCATCAGTCGATTCAGGCAATAACAATCATATTCAGACGATCGCTCGGAGCAATTTTATGCCGTACGGACGGGATTTTGCGGGGGGTCGACCGACCGGTCGATTTTCTAACGGGAGAATTACGACTGATTTTATATCGGAGGCAGCTGGTTTGAAACAAATTGTTCCAGCATATTTGGATCCAGCTTATAATATGTCTGATTTTGCTGTTGGAGTTAGTTTTGCTTCTGCTGGAACTGGATATGATAATGCTACTGCTGATGTTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTGATACCCTTGTGGAAACAAGTGGAGTACTACAAAGAATACCAAAAGAAACTAAGAGCTTATCTTGGTGATACAAAGGCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/xeuKWFhXtG" ref_id="SGN-U346934" ref_strand="+" ref_description="SGN-U346934        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:At4g22250.1); similar to zinc finger protein family-like [Oryza sativa (japonica cultivar-group)] (GB:XP_483438.1); contains InterPro domain Zn-finger, RING (InterPro:IPR001841) | chr4:1889471-1890397 FORWARD | Aliases: None(evalue: 4e-32, score=135) genbank/nr: hypothetical(evalue: 3e-30, score=135)">
      <seq>tcttttctctcacacacgcaaatcaagaagaagaagaagaagaagaagaagaaaattccattccggaatccaaaacaatcaatgtgatcaaagcttttggactcttataaaaaaatggacggagaagataggccgaggacgatgtggaggagcttgaagcaacggttgggattcaccggactggtctgctgtggatcctcttggaacttgagagtatcagacgtgacaatgagagaagaagaggcccaacaatttgaagcccaattattcggtgaagaagagcccataatcggggcccatcaaggaaacgtgaacctcgctacagcgttggcagcggaacgtcggtaccggagcgtggatgcgacggcggaattgaagacgctgatgagattgtttgaggaaacggacggcatagatgaggagaagagtctgaaatggtacattaaagaagaaggaagaggaggaattgatgaaatgtgctgcgtgtgcatggagagaaataaaggcgcagcgtttatcccctgtggacatacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0011E08-NNGZy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0011E08.1" temp_strand="+" temp_description="C07HBa0011E08.1  AC232643.1 htgs_phase:1 submitted_to_sgn_as:gi|205831293|gb|AC232643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0011E08, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="24289" stop="25509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24562" g_stop="24674" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24675" i_stop="24783" i_length="109">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24784" g_stop="25209" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="536" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0011E08.1" gen_strand="+" ref_id="SGN-U346934" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0011E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24562" e_stop="24674"/>
          <exon e_start="24784" e_stop="25209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCTCTCACACACGCAAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAATTCCATTCCGGAATCCAAAACAATCAATGTGATCAAAGCTTTTGGACTCTTATAAGTAAGAATTTCACTGACCTTTTTCATCTTCCTTCATGGGTTTTTATTGAGCTTTCTAGTGACGAAATTAAGTGCAATAATCACAGAAAAATACCTTACTAATTTGTCAGAAAAATGGACGGAGAAGATAGGCCGAGGACGATGTGGAGGAGCTTGAAGCAACGGTTGGGATTCACCGGACTGGTCTGCTGTGGATCCTCTTGGAACTTGAGAGTATCAGACGTGACAATGAGAGAAGAAGAGGCCCAACAATTTGAAGCCCAATTATTCGGTGAAGAAGAGCCCATAATCGGGGCCCATCAAGGAAACGTGAACCTCGCTACAGCGTTGGCAGCGGAACGTCGGTACCGGAGCGTGGATGCGACGGCGGAATTGAAGACGCTGATGAGATTGTTTGAGGAAACGGACGGCATAGATGAGGAGAAGAGTCTGAAATGGTACATTAAAGAAGAAGGAAGAGGAGGAATTGATGAAATGTGCTGCGTGTGCATGGAGAGAAATAAAGGCGCAGCGTTTATCCCCTGTGGACATACATA</genome_strand>
        <mrna_strand>TCTTTTCTCTCACACACGCAAATCAAGAAGAAGA---AGAAGAAGAAGAAGAAGAAAATTCCATTCCGGAATCCAAAACAATCAATGTGATCAAAGCTTTTGGACTCTTATAA.............................................................................................................AAAAATGGACGGAGAAGATAGGCCGAGGACGATGTGGAGGAGCTTGAAGCAACGGTTGGGATTCACCGGACTGGTCTGCTGTGGATCCTCTTGGAACTTGAGAGTATCAGACGTGACAATGAGAGAAGAAGAGGCCCAACAATTTGAAGCCCAATTATTCGGTGAAGAAGAGCCCATAATCGGGGCCCATCAAGGAAACGTGAACCTCGCTACAGCGTTGGCAGCGGAACGTCGGTACCGGAGCGTGGATGCGACGGCGGAATTGAAGACGCTGATGAGATTGTTTGAGGAAACGGACGGCATAGATGAGGAGAAGAGTCTGAAATGGTACATTAAAGAAGAAGGAAGAGGAGGAATTGATGAAATGTGCTGCGTGTGCATGGAGAGAAATAAAGGCGCAGCGTTTATCCCCTGTGGACATACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/xeuKWFhXtG" ref_id="SGN-U328659" ref_strand="+" ref_description="SGN-U328659        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | dual specificity protein phosphatase family protein, contains Pfam profile: PF00782 dual specificity phosphatase, catalytic domain | chr2:1588401-1590163 FORWARD | Aliases: T1O3.4, T1O3_4(evalue: 7e-81, score=297) genbank/nr: gi|42568937|ref|NP_178534.2| dual specificity protein phosphatase family protein [Arabidopsis thaliana] >gi|28393745|gb|AAO42283.1| putative protein phosphatase [Arabidopsis thaliana] >gi|28973409|gb|AAO64029.1| putative protein phosphatase [Arabidopsis thaliana] >gi|37813554|gb|AAR04550.1| dual-specificity phosphatase-like protein [Arabidopsis thaliana] (evalue: 5e-79, score=297)">
      <seq>gaattttcaagaatccctccacccggccaaaaccaaaattactagcaccggtagctataaaatcaccaaatctagccttaaattctctcttgacgcttctccttcttctatagtcacttcaaatcggatcaaatctaggcaaaagtttctcctttttcctcttctgggtcgttcttgttttttgtcgattgaggcggacatagtgaatcagttcagcatgaggaagagagagagggaaaacccatgtggtatttgtgggcattatcacaagtacgaagaaggggagccttgtggggtttgtgggcatcgaatgcctactgtttctgatatgggttctacaattcaagtcagtgcttttccttctgagatcttgccggagtttctgtttttgggaagctatgataatgcttctagagctgagcttcttaagagtcaagggatttctcgtgttctcaatactgtacctgcttgccaaaatctatataaaaattcctttacttatcactgccttggtgatgagcaagatttgcagtttgacgatgctatccaattcttagaacaatgtgaaagggatagggctcgtgttcttgtacattgcatgtcagggaaaagcaggtcacctgccattgtaattgcttacctgatgaaaagtagaggctggaaacttgcacagagctatcagtgggtgaaagatcggaggccttatgtcgaccttaatcaaggggtttaccatcaactagaggcgtatgaacagaagatgttcggatcactggagaaccagcctgcatttggcatgccggtcttttcttctcctgtgctgccatcattgagctttaactacccaaagcctagtgattcagtttcaattcagcctttcacttttctggtgctacatcaattttcgctcgtcctgatattggcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0011E08-NNGZy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0011E08.1" temp_strand="-" temp_description="C07HBa0011E08.1  AC232643.1 htgs_phase:1 submitted_to_sgn_as:gi|205831293|gb|AC232643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0011E08, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="32184" stop="25259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31884" g_stop="31428" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31427" i_stop="27848" i_length="3580">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27847" g_stop="27748" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="557" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27747" i_stop="26352" i_length="1396">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26351" g_stop="26294" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="615" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26293" i_stop="26015" i_length="279">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26014" g_stop="25908" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="722" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25907" i_stop="25763" i_length="145">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25762" g_stop="25559" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="925" r_length="203" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0011E08.1" gen_strand="-" ref_id="SGN-U328659" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>926</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0011E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31884" e_stop="31428"/>
          <exon e_start="27847" e_stop="27748"/>
          <exon e_start="26351" e_stop="26294"/>
          <exon e_start="26014" e_stop="25908"/>
          <exon e_start="25762" e_stop="25559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTTCAAGAATCCCTCCACCCGGCCAAAACCAAAATTACTAGCACCGGTAGCTATAAAATCACCAAATCTAGCCTTAAATTCTCTCTTGACGCTTCTCCTTCTTCTATAGTCACTTCAAATCGGATCAAATCTAGGCAAAAGTTTCTCCTTTTTCCTCTTCTGGGTCGTTCTTGTTTTTTGTCGATTGAGGCGGACATAGTGAATCAGTTCAGCATGAGGAAGAGAGAGAGGGAAAACCCATGTGGTATTTGTGGGCATTATCACAAGTACGAAGAAGGGGAGCCTTGTGGGGTTTGTGGGCATCGAATGCCTACTGTTTCTGATATGGGTTCTACAATTCAAGTCAGTGCTTTTCCTTCTGAGATCTTGCCGGAGTTTCTGTTTTTGGGAAGCTATGATAATGCTTCTAGAGCTGAGCTTCTTAAGAGTCAAGGGATTTCTCGTGTTCTCAATGTGAGTCCCCTTTTACTTGTCTCCTTGCTTTCTTTGGTACTTTGTTTGAGTTAATTGAATTGTTAAGTAGTGTTGAGAAGTTCCAATCTTTGAGGCAAACGTTGTGAAGTGTGACTTTTTGTTGTTGTTGGTATGAATTATAATTAGTTGACCTTGTTTTGTTCTCGTGTTTGAGGGATTTGGGGATAGGCTTGTTATCTGTTGCATTGTCTTTTTGAATTTCTTGGAGGTACTCTTGTTGAGATAACTTAATTTAATAGTTACATAGTCAAATTCAATCACTTGGTGTACGGTCATGCATTTTTTGTGACTAGGCAATTTCTCTTTAACAATTTTGTTGTGAGTACCTTTCACTTCCTTTGTATGATGCATGTAGAAGATTCTCATTGTTGTAGTATAATAGTAACAATCTGCGAAAACGTGGCCTGAGTTTCCAATCCTAAGGTGTGTGAATGAATATAAATCACAAAACTGACCATACAACAACATCTCAATCCCAAGGTAGTTGATGAATCCAGAAACGATCCAAACTTGATGTTTGTTATACAGCCATGCCTTTAATCCACGTAATAAATGACAAGTTTGCGCAGCAGCTTTGCACTTAGGTCTTTTGATTTCTTTGGAGCTGTATGGGGTTCTCTGGTTTAAGTTGGCGATAAAATTATTATCTTGCATTGAATAGTTCATGAGGGAGGATTATGACAAGCAATGAAGAAGAATCTTCTTTAGCAAAAGTATCTAGTTTCTTTTTCTTCTCATATTTGTCTGAAAAAAATCAGCTCAACCCTCTTCTTATAAATGAGTTGGTGTCATATTTGTTAGTATCTTAAAACAAGCAAGCAAATTCCAGTAGACAAAAAAGACCCTTTCTTCCCATATGTGTGTTACTTGGTACTGGTGTTGGTGAGAGATGATAAGTACCTGTAATTAGGTGGTGAGTGTGCACTGCCCTGGACACCACCGTTGTCAAAAAGTAAGAAAAGTATCTTATAACAAAATGATGCATAACTCCATGCTCCTACACAAATCTTCAAAGATACTTATTTTATGATCTTGCCTATTTAGTGCGTGGCTTCAACTGCATCCTACCATTACAGTGTGAAATGAATTTGTGTTCCATCTCATAAAAGTCTAGTCTGTGGATTTTGGTTTTATTAAAAAATGCCTATTCAAACTTAGCCTTTAAACGACGCCGACGACTAGAATTAGATCTTGACTGAGATTCTTTTGGTAATTATCTGACATTTTCATTAACAACCGTGAAGAATTACAAAACTATAAGAGCGCCTTCACAGTTTGCTTTTCCATCTGCTATTCTCATGTACAAAGAAAAGTAAGAATAGAACCTAATCTAGAACACAAAGCTTTGATTCATGATCCTCATTCTACAGGGGCTCTTACATCACAAGCATAAACTGTTTCTCTTGCTACACATTCCTGAAGCCTTGATTTCTTCTCAAAGATCCTTTAATTCCTCTCGATCCAAATGGAGTGAACAAATTATGTATAGACCTTTCTGATAAGTTGAGCACTCTGTGTTTTCCCCTTGGTCCTCATTATTATCCAATTGAGGTGATGTTTCGAGTCTGTGGCAAAGAAAATCTGAAGATGAAGCCACTGTAATAATCTTTCTCATATCCATTTTGAATACAGCATATGAACAAATAAGTGGTCTCTGGATTCATTTGCTACAGCACATAACCTGTGTTGGTGATCCACATTCATTCCCCAAGAAGCTAACCTGTCAACTGTCATCAATCTTCCTTGCAACTGCAGCCAGGGTTTGATTATGACTTTATGTTGGGCTGCATTATTGAACATAAGACCCTTCCATCTCATTCGGGGACAGTCCCTATCAACTGAAGATAGATCTGCTTAACCAATCCTTTGTGGCGTGCTTCATTAATTTAGTTTGTAAGGCATGTCGTGCAATTTAAAGGGAACTTCCCTGTTGGAAATTAAGCTAATGTCTCTGTTGTCATCTTAGAATATTTGTCCATATTTGCCACTTGGCCAGAAAGGGAAGAATGTAAGTATGAGATTATGACACAGACACACAACAACTTATGATATGTCAAATTCATATGCTTCGACCTTGGAGGAATGGTTGGTGTGTGGCATTGAACTTTCCCCTTTCAGACAGGAACCAATATGGACATTATCTCATTTTATTTAATAAGCCTGCTGAGTTTTATTGTTTTCAATTCTGAACTCCATGGGTTTCTTTTTGGGATTTTGTACTTGCCATTTTCGTCTATAGCTATCTGCAATAAATTTTCTTTTTCTGGTGAAGTTCTGTAGTACATTCTCTTGTAATTTATACATTCCCGAACCCACAGTTTAAGTGCTAAGCCAACTTTAGTGGGAGTAGTTCATATAAGATGATGGGAACCTTTGAGAAAAACACATGCTGCAGTTTGGATATGATATTGTCTGGTTCATGTATGATGGTCTGGCTCATGTATGATGATGCACGCAAAAAACTACAACTGTGATGTGTATTGTACTGGTGGAAAAGCATGTCGTGCTGGTTTGAGTAGTATCATTGCATGATCTATTGTTTGTAGGAAGGCAAAAGATTATAGCTCATTGGCTGACGATATTGCCTAAGACAGTAGGAGTTATGTACACAATCTGAAGCCTTGGGAATTTCTCAGAAAGAAGAGAAAGAAAAGGAACTGACAAGAGGCTATATACAATGGAACTAATATCAATCATTGTAGTTAGAGGGACGGATTGCAGCAAGTGTAGTACACATCATTGCGGTGAATCTGGATTGGCTGAATGTTAATTTGATTAGTGGTCCTTTCCGGGGTTTCATGGACATAATTATGGATTTCCTACTCTACTTGATTAATATGCGCCATTTCCTCTCTTGGATGCTTTCTCATTGTCTAGTTAATTAGTCTCTAGTCCAGAGGAAGGGAAAGGTCAGTTTTCCTTTGATGTATATCTACCATTAGGTTATGAAGGTGATCTCGAATACGATGTTAGTTACTAAGACAAGGAGGAGTACCTATTCAGTTTTAGCTATGTTTTTGTTTATGCCCTTCCATTATTGATCAGGATCTTGATGAGCTATCATGAATTACCACCAGGGAGGTTGTGATTTATAGTTCTCTAAAAGAACATTCTTTGAATCCTATAAATATGAGCTGTGGAATAATTATACTCACTAACAGAATGAACCCAGTGAGGTTTGTTTGTCACCTTTTCAATCAAGCTGGACTCTTCCAACTTTTACTGGTGAATAACTCGATTTAGAGGGTAAGAGAGTGGCAAACAGTTCCACATAGCTTGTTCATTTTCCTGCTCTTTTCAAGTACACTGGGCTGTTTCTCTGCAATTTTTTAATTGATGCAATTTAATCTTGAGAATATTTTACCATCTGAATCGAACTAAACTATATCTGGCACTCAGGCTGTTTGCTAAAATATGCTGATGTTTCTCTTGCTATGCCATTTCAATTTTCATTTTAGTGCTTCAGAAGTTATGCATGAGACAACTTTTGCATGCATCTCCTATTACTTTCAATATATTGAACCAAGTTCTCACCCACATTTACTTTTTCTCTGTGCAGACTGTACCTGCTTGCCAAAATCTATATAAAAATTCCTTTACTTATCACTGCCTTGGTGATGAGCAAGATTTGCAGTTTGACGATGCTATCCAATTCTTAGGTGAGTGTCATTACTTGTGAACTTAGTATGTCTAAGCTTATTTTTGACAATTTTTTACTTTATAGGTTTAAAGAGTAGTTTAGTCTGACATAGGATTTTAGATGATTTCTTTTTTAGATTCTTGGCTTTGTTGGATATCAAGGAACAATAGGATTTGAAACACATAAAGTTACTATCACCAAATAAAATGGGTTTTGAGCATCTATTGGCTTTTCTGAAGGAAAGTTTTTACTAGCACGTAGTTATTTCTGGGGTATTTTCATTAAGAATACAAATGCTACTTATCAAAAGAACATTGTAGAAAGCACCCAAAGGCGTGGTCTAGTGGTCAATGAAGTGGTTAAGAACCCTGAAGTCTTGGGTTCAAGAGTTAGCGAGACAAATACCACTAGGTGATTCTTCCAATAAAGAGAAAAAAATGAACATTGTAGAAAACCTCTTCAGAACCCGGAAACATAATTAGAAACCCTTTTATTTCGCAATACCTATCAGTCAAATGTCTGCATTCTGAATTCCATTCACATTGTGTAAACATCATAGCTATTATTGACCATAGAATCACATAATGATTCTTTAACTGAGATAATTCTGCATCTATAAATATTATCAGCCTTTTGATCTCAGATGAGTTCTACTCTTTCATTGAAGTTCCTCTCTTGTAACTCAACTTTTGATCAATTTACTAAGTCACAATCTGCTTGATTATGCCCCTTGTTCCTCTTCCTAATAATCACCTTGTTCCAAACTTTGAAGCTTTAGCCTTGTATTTTCCACGAGACTAGGCATCCTTCCTCCGAGTTGACATGCTTGTATAGAGAGTTTTATTGTATGTGTATTACTTCTGCCCTCTGGCTGTTTGATCAATGATCCCTGTCTGTGAAGGACAAGCTACTGTGTTGAATTTCTCTTATGAATTTAACTACCTGGACTTTGACTGCGAGCTCTTCACAGAATCCAGTACTTCATTCTTTTATCCATCTTCAATTGTAGCTTTTTCCAGTTGAACGTTGAGTCTTCTACAGGCTTCTTGTGTATATATTTGTCTCCAACAGGCTGTTGTTTTGAACTTTTGGTCTAAAGTAGGAAACGAAGCTTGCCATCTTCTTTTCCTTTTCTTAATGCTTTGGTCGTGTCTTGGATATGTGCTTATACTTGACAGTTCTTGAAGATTAAACCTGACAGCACATGAAAAGATTTTACTTGAACTTTCTCTACAATCTACAACTATTGAGTAGGAAAGTATAGTATTCGTGCTAAAATATGATATCATGCAATTTTACTGCTATAGTTGAAACTGTCATGTTTATGGCTTCAACTTTATTTTAGAGCCATCTTTGTATGTTTTGTGGAGATGCTTTGCTGCTAAACTGATGTTAATGTTACTTTTCTTCTGCAGAACAATGTGAAAGGGATAGGGCTCGTGTTCTTGTACATTGCATGTCAGGGAAAAGCAGGTTTGGAGTTTGATTTATGAATTTTGCATGCATAAGTTTTCATGATTTTCTGTTTGTTCTTTCTTTTTGGTTTGGTGTTGCATTTTTTCCTCCATTCTGTGTTCTTTCCCCGGGTTTCCCTGAAATATAATGGTGTACAGGTCAAAGCGTGTTTATCGAAACACCTATATTTGTTGATTGAGAATGAGAAATGCAGTAAACTGTTCCATAGAATTGGTTTCAACTGATTGTGCTTACAGAAGTAACTATTGTTACAACTTAATCGTGCATTTCCGACAGGTCACCTGCCATTGTAATTGCTTACCTGATGAAAAGTAGAGGCTGGAAACTTGCACAGAGCTATCAGTGGGTGAAAGATCGGAGGCCTTATGTCGACCTTAATCAAGGTTTAGTTATACCCTTATAAGCATTTCTTCATTGTACGTAGCTAGTTACTCTGCTCGGACATGCTCGCAATGATCTAGATTTTGTTTTTGTTATTATAGCCCTATATGTCAATGAAACCTTTTTCGTATTTTTTGGTAAATGCAGGGGTTTACCATCAACTAGAGGCGTATGAACAGAAGATGTTCGGATCACTGGAGAACCAGCCTGCATTTGGCATGCCGGTCTTTTCTTCTCCTGTGCTGCCATCATTGAGCTTTAACTACCCAAAGCCTAGTGATTCAGTTCAAATTCCAGCCTTCAACTTTTCTGGTGCTACATCAATTTTCGCTCGTCCTGATATTGGCATTC</genome_strand>
        <mrna_strand>GAATTTTCAAGAATCCCTCCACCCGGCCAAAACCAAAATTACTAGCACCGGTAGCTATAAAATCACCAAATCTAGCCTTAAATTCTCTCTTGACGCTTCTCCTTCTTCTATAGTCACTTCAAATCGGATCAAATCTAGGCAAAAGTTTCTCCTTTTTCCTCTTCTGGGTCGTTCTTGTTTTTTGTCGATTGAGGCGGACATAGTGAATCAGTTCAGCATGAGGAAGAGAGAGAGGGAAAACCCATGTGGTATTTGTGGGCATTATCACAAGTACGAAGAAGGGGAGCCTTGTGGGGTTTGTGGGCATCGAATGCCTACTGTTTCTGATATGGGTTCTACAATTCAAGTCAGTGCTTTTCCTTCTGAGATCTTGCCGGAGTTTCTGTTTTTGGGAAGCTATGATAATGCTTCTAGAGCTGAGCTTCTTAAGAGTCAAGGGATTTCTCGTGTTCTCAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTACCTGCTTGCCAAAATCTATATAAAAATTCCTTTACTTATCACTGCCTTGGTGATGAGCAAGATTTGCAGTTTGACGATGCTATCCAATTCTTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATGTGAAAGGGATAGGGCTCGTGTTCTTGTACATTGCATGTCAGGGAAAAGCAG.......................................................................................................................................................................................................................................................................................GTCACCTGCCATTGTAATTGCTTACCTGATGAAAAGTAGAGGCTGGAAACTTGCACAGAGCTATCAGTGGGTGAAAGATCGGAGGCCTTATGTCGACCTTAATCAAG.................................................................................................................................................GGGTTTACCATCAACTAGAGGCGTATGAACAGAAGATGTTCGGATCACTGGAGAACCAGCCTGCATTTGGCATGCCGGTCTTTTCTTCTCCTGTGCTGCCATCATTGAGCTTTAACTACCCAAAGCCTAGTGATTCAGTTTCAATT-CAGCCTTTCACTTTTCTGGTGCTACATCAATTTTCGCTCGTCCTGATATTGGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/xeuKWFhXtG" ref_id="SGN-U332360" ref_strand="+" ref_description="SGN-U332360        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT2G05810.2 | Symbol: None | armadillo/beta-catenin repeat family protein, weak similarity to CCLS 65 (Silene latifolia) GI:2570102; contains Pfam profile PF00514: Armadillo/beta-catenin-like repeat | chr2:2215142-2217156 REVERSE | Aliases: None (evalue: 8e-66, score=246) genbank/nr: gi|50897260|gb|AAT85769.1| At2g05810 [Arabidopsis thaliana] >gi|20466608|gb|AAM20621.1| unknown protein [Arabidopsis thaliana] >gi|20197848|gb|AAM15279.1| hypothetical protein [Arabidopsis thaliana] >gi|30678229|ref|NP_849939.1| armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] >gi|15224987|ref|NP_178638.1| armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (evalue: 6e-64, score=246)">
      <seq>aatgagctgcttccgacattgcttcctaatcttctttctactttggttcgtgttcagactctatgtgaggaatgttctgacccggagaagactccgggtaagctgttgatgcagtcggaccttgatatggcttctgggtggttgtctaagcagatccatcatctagaccttctttgccgttctggtgtgcttcgtcagtctactgctattgttctctctcacccttcgtcgaactctaccaaagacgatttagttctttatattagagacgtgtttactagaattcagatcggcggagttgagttcaagagaaaggctttggaatcgttgattcagctgctttctgaggatgaaaaatcagctggtcttgttgcaaaagaaggacaagttgggtacttgattaatttacttgaccttaatacggatccttctatacgtgaacaggcagttcttgctgtatcaatgcttgtttccatgagcgaacaggcaagaaaatgcgtgtttgaagagggtgctttgggtcctttactgagaatcatcgagtctggttcggttacaatgaaggaaagagctgtcttggcagtggaatgcatcacaaatgaccctgaaaatgcttgggcaatctcagcttatggtggtgtctctgtactcctagacttgtgtaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0011E08-NNGZy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0011E08.1" temp_strand="+" temp_description="C07HBa0011E08.1  AC232643.1 htgs_phase:1 submitted_to_sgn_as:gi|205831293|gb|AC232643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0011E08, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="50661" stop="51929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50961" g_stop="51629" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0011E08.1" gen_strand="+" ref_id="SGN-U332360" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0011E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50961" e_stop="51629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAGCTGCTTCCGACATTGCTTCCTAATCTTCTTTCTACTTTGGTTCGTGTTCAGACTCTATGTGAGGAATGTTCTGACCCGGAGAAGACTCCGGGTAAGCTGTTGATGCAGTCGGACCTTGATATGGCTTCTGGGTGGTTGTCTAAGCAGATCCATCATCTAGACCTTCTTTGCCGTTCTGGTGTGCTTCGTCAGTCTACTGCTATTGTTCTCTCTCACCCTTCGTCGAACTCTACCAAAGACGATTTAGTTCTTTATATTAGAGACGTGTTTACTAGAATTCAGATCGGCGGAGTTGAGTTCAAGAGAAAGGCTTTGGAATCGTTGATTCAGCTGCTTTCTGAGGATGAAAAATCAGCTGGTCTTGTTGCAAAAGAAGGACAAGTTGGGTACTTGATTAATTTACTTGACCTTAATACGGATCCTTCTATACGTGAACAGGCAGTTCTTGCTGTATCAATGCTTGTTTCCATGAGCGAACAGGCAAGAAAATGCGTGTTTGAAGAGGGTGCTTTGGGTCCTTTACTGAGAATCATCGAGTCTGGTTCGGTTACAATGAAGGAAAGAGCTGTCTTGGCAGTGGAATGCATCACAAATGACCCTGAAAATGCTTGGGCAATCTCAGCTTATGGTGGTGTCTCTGTACTCCTAGACTTGTGTAAATCT</genome_strand>
        <mrna_strand>AATGAGCTGCTTCCGACATTGCTTCCTAATCTTCTTTCTACTTTGGTTCGTGTTCAGACTCTATGTGAGGAATGTTCTGACCCGGAGAAGACTCCGGGTAAGCTGTTGATGCAGTCGGACCTTGATATGGCTTCTGGGTGGTTGTCTAAGCAGATCCATCATCTAGACCTTCTTTGCCGTTCTGGTGTGCTTCGTCAGTCTACTGCTATTGTTCTCTCTCACCCTTCGTCGAACTCTACCAAAGACGATTTAGTTCTTTATATTAGAGACGTGTTTACTAGAATTCAGATCGGCGGAGTTGAGTTCAAGAGAAAGGCTTTGGAATCGTTGATTCAGCTGCTTTCTGAGGATGAAAAATCAGCTGGTCTTGTTGCAAAAGAAGGACAAGTTGGGTACTTGATTAATTTACTTGACCTTAATACGGATCCTTCTATACGTGAACAGGCAGTTCTTGCTGTATCAATGCTTGTTTCCATGAGCGAACAGGCAAGAAAATGCGTGTTTGAAGAGGGTGCTTTGGGTCCTTTACTGAGAATCATCGAGTCTGGTTCGGTTACAATGAAGGAAAGAGCTGTCTTGGCAGTGGAATGCATCACAAATGACCCTGAAAATGCTTGGGCAATCTCAGCTTATGGTGGTGTCTCTGTACTCCTAGACTTGTGTAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/xeuKWFhXtG" ref_id="SGN-U346855" ref_strand="+" ref_description="SGN-U346855        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G05810.2 | Symbol: None | armadillo/beta-catenin repeat family protein, weak similarity to CCLS 65 (Silene latifolia) GI:2570102; contains Pfam profile PF00514: Armadillo/beta-catenin-like repeat | chr2:2215142-2217156 REVERSE | Aliases: None (evalue: 2e-21, score=100) genbank/nr: gi|50897260|gb|AAT85769.1| At2g05810 [Arabidopsis thaliana] >gi|20466608|gb|AAM20621.1| unknown protein [Arabidopsis thaliana] >gi|20197848|gb|AAM15279.1| hypothetical protein [Arabidopsis thaliana] >gi|30678229|ref|NP_849939.1| armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] >gi|15224987|ref|NP_178638.1| armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (evalue: 1e-19, score=100)">
      <seq>cgaataggaaggaattggttaaggacgagaagagtgtgatgaagttggtccagatgttggattccaagaatgatgcggtttcgaagaagttcccggtggcagtggtggcggcaatcatggcaggagggagccagggttgtcggaagcggctagtggaggccggcgcatacggacatttgcagaagctggcggaggcggaggttgtgggggctaagaaggccttgcagagactctcaggcaataggctaaagagcattttcacaaggacatggagtaattagctaagcaactaacccccgccaacgaagggtggttgtttggatttttcccaactgtcaaatgtggaaaaccaactcatttccttcaaagaaaccaacaaacaatcacacactcggtataccccaactttaaccttatactatattgttttcaattattagaaaaagaaaaaaaaggaagttgaatttattctaaactatataacacatggcatggatgcggtttttagggagtatccttgtttgtttattttttctcctcttttttttttaatgttttgtttcaccatgtgaagctttgtaagtgagtgataatagatagtgcttgcaccccccccccccccaaccccctttttcccccttctggggcttcttttatttttttttttcaagggttttttttttttttaagggcccacccttttttaaaaagggggccacttggccccaaaatttaccccccctttttggggcctnnnnnaanaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0011E08-NNGZy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0011E08.1" temp_strand="+" temp_description="C07HBa0011E08.1  AC232643.1 htgs_phase:1 submitted_to_sgn_as:gi|205831293|gb|AC232643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0011E08, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="51889" stop="54309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52189" g_stop="52497" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52498" i_stop="53565" i_length="1068">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53566" g_stop="54004" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="745" r_length="436" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="760" polyA_stop="783"/>
      <MATCH_line gen_id="C07HBa0011E08.1" gen_strand="+" ref_id="SGN-U346855" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0011E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52189" e_stop="52497"/>
          <exon e_start="53566" e_stop="54004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATAGGAAGGAATTGGTTAAGGACGAGAAGAGTGTGATGAAGTTGGTCCAGATGTTGGATTCCAAGAATGATGCGGTTTCGAAGAAGTTCCCGGTGGCAGTGGTGGCGGCAATCATGGCAGGAGGGAGCCAGGGTTGTCGGAAGCGGCTAGTGGAGGCCGGCGCATACGGACATTTGCAGAAGCTGGCGGAGGCGGAGGTTGTGGGGGCTAAGAAGGCCTTGCAGAGACTCTCAGGCAATAGGCTAAAGAGCATTTTCACAAGGACATGGAGTAATTAGCTAAGCAACTAACCCCCGCCAACGAAGGGTAATTTTTTCATCTTTAACTATATAGAACTAGTATTTACTTGGCACTTCAATTCTATATTAACTTATTCCACATGACATTAGTGGTTCCCACCGTTTACCGGTCAACAACATTCCAATTTGACATGTTAATGTTGTACTATTTCCTTTATTTGCCTTCCATTTTTCAATACAAGAACGACCATGTTCATATACTTGATCTAGATCCCCTTTACAAGTCAGTTTCTCATTAAGTGAAGGTGCAGTCTCTTGCTCAAGAGAGTAAGAAGGCGAGGGCCCCCAGCGCAAGAGTAGTGGGAACTAATATGCCTAACAATGTGTTAAAGTACACATTTTTGCAAATCAGAAGATCAAGTTGAAACATAAATCATCTTGTTTAAGACATTAAAACTTCTGTCTAGTGGCTGATACTCATTGTAATTCTTGACCCCCTTCCCCTTCAAAAGAGAAACAATACAGTATTTTGGGCTTCTTTTACTCAAAAAAAATAATGATTTTGTAAAAACTGTATTTTTTTCAGCTAATCATTTTAAAAGTTAAGGGGGTAGGCATGAGATGATGAGTATTTGATATGAGTCCTAGGGCTAGTCATTATCATATATTCAAATGATACTACCTTCCTTAGACTAGTAGATTGTAGGCAACCATCAAGACCAAGTCATTTACCATTGAGTAGAAGTTGGTGGACTATAATTAGAAATCCTAACTGTCCAACCTTAAAGCAGTACATTTTCTTCCCTGTAGTGAAACACACTAGACATCCAAATGCTTGCAATGGGCCATACTGAGTTGTGATAAATATTCTGGTCCTTGAGTAGGGCCATGATTCTCAACTTTTATTATTCTGTCTTTGGATATGAATGGCATTGATGCACTGCTTTGCTGGTTCATCATCCATCGGAAGTGTCTTTGTTGTTAGGTTTACTACTATTTCATTAACTGACTGGATTACATGTGATGATCATTAGTTGTACTTTAAGTCCAATTTACTCTTAGCTGCCTTGAAGTTCTTATTAATACTCACTAATCTTTTTTCCTGACATTATCGTACCTATGATGCTTCCTGCAGGTGGTTGTTTGGATTTTTCCCAACTGTCAAATGTGGAAAACCAACTCATTTCCTTCAAAGAAACCAACAAACAATCACACACTCGGTATACCCCAACTTTAACCTTATACTATATTGTTTTCAATTATTAGAAAAAGAAAAAAAAGGAAGTTGAATTTATTCTAAACTATATAACACATGGCATGGATGCGGTTTTTAGGGAGTATCCTTGTTTGTTTATTTTTTCTCCTCTTTTTTTTTTAATGTTTTGTTTCACCATGTGAAGCTTTGTAAGTGAGTGATAATAGATAGTGCTTGCACCCCCCCCCCCCCCCCCAACCCCCTTTTTCCCCATCCTAGGCATCAGTTGATATTGTATATTCAAAGGTTTGTTTTTCTTGTAATGGCCAAGCCTTAATTACAAAGTGTGCAACTTGTCTCTTAAATTTATCATCTCTTT</genome_strand>
        <mrna_strand>CGAATAGGAAGGAATTGGTTAAGGACGAGAAGAGTGTGATGAAGTTGGTCCAGATGTTGGATTCCAAGAATGATGCGGTTTCGAAGAAGTTCCCGGTGGCAGTGGTGGCGGCAATCATGGCAGGAGGGAGCCAGGGTTGTCGGAAGCGGCTAGTGGAGGCCGGCGCATACGGACATTTGCAGAAGCTGGCGGAGGCGGAGGTTGTGGGGGCTAAGAAGGCCTTGCAGAGACTCTCAGGCAATAGGCTAAAGAGCATTTTCACAAGGACATGGAGTAATTAGCTAAGCAACTAACCCCCGCCAACGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGTTTGGATTTTTCCCAACTGTCAAATGTGGAAAACCAACTCATTTCCTTCAAAGAAACCAACAAACAATCACACACTCGGTATACCCCAACTTTAACCTTATACTATATTGTTTTCAATTATTAGAAAAAGAAAAAAAAGGAAGTTGAATTTATTCTAAACTATATAACACATGGCATGGATGCGGTTTTTAGGGAGTATCCTTGTTTGTTTATTTTTTCTCCTCTTTTTTTTTTAATGTTTTGTTTCACCATGTGAAGCTTTGTAAGTGAGTGATAATAGATAGTGCTTGCA---CCCCCCCCCCCCCCAACCCCCTTTTTCCCCCTTCTGGGGCTTCTTTTATTTTTTTTTTTCAAGGGTTTTTTTTTTTTTTAAGGGCCCACCCTTTTTTAAAAAGGGGGCCACTTGGCCCCAAAATTTACCCCCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/xeuKWFhXtG" ref_id="SGN-U319039" ref_strand="+" ref_description="SGN-U319039        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: AT2G05790.1 | Symbol: None | glycosyl hydrolase family 17 protein, similar to elicitor inducible chitinase Nt-SubE76 GI:11071974 from (Nicotiana tabacum) | chr2:2199389-2201480 FORWARD | Aliases: T25M19.1, T25M19_1 (evalue: 0, score=674) genbank/nr: gi|30678225|ref|NP_178637.2| glycosyl hydrolase family 17 [Arabidopsis thaliana](evalue: 0, score=674)">
      <seq>taaagcaccactcactttcatgctctgtttcttcatcaagcaatagagcatggaaaaactcaccatttgtcttctcctcttcgccttttccttttcccttttctcctccattgcagatgctggttcaattgggataaactatggacgtgtagctaacaacttaccatcagcagttaaagtgatagcactgttgaaatctcaaggcgtggagcgtgttaaggtctacgatactgaccctgctgtgctcaaagctctttctggttccgatatcaaagttactgtaaatctgcctaatgagctgctctacaatgctgcgaaaaggccgtcgtttgcttactcatgggtggagaaaaatgttgctgcttattacccatccacccaaatcgaatccattgctgttggaaatgaagtttttgttgacccacataacacgacacgttttcttgtatccgccatgaagaatgttcatcaagctcttgttaaatttaatttccatgacaaaattaaaatctcttctccggttgctctgagtgctttgcagaactcttacccttcttcagctgggtcgttccgatccgaattggttgaacctgtcattaagcccatgctggatttcctccggcaaacgggatcttatctaatggtgaactgttatcccttttttgcttacgagtcgaattccgatgttatttctcttgattacgctttgttccgtgaaaaccccggcgttgtggacgccggtaacggacttcgttacttcagtctgtttgatgcccaaatcgacgctgtttttgctgcattgtcggctttgaagtacaacgatataaaaatggttgtaaccgaaactggctggccatctaaaggagacgacaccgaaatcggcgcttccgtcgacaacgccgcgtcgtacaacggaaacctcgtccggcggatacttatcggtggaggaacccctttgagaccgaaagaagacctcaccgtcttcctcttcgctcttttcaacgagaacaaaaaaccgggtccaacttccgagagaaacttcgggttgttctacccaaatgagcgaaaagtttacaacataccattaacaatggaaggtttaaagcattacgttgaccggcggtcaccggcggccggcgagcagagaacgcagaaaggcgggaaggtgaatgtgtcagggcaaacatggtgcgtagcgagtggagaagcggagaaggatcacctacaagcagctctagattatgcttgtggtgagggtggagcagattgccgttcgattcaaccaggttccacgtgttacaatcctaacacgttagaggctcatgcatcattcgcttttaatagttattatcagaaaaaaggccgtgcgatgggttcgtgttattttggtggggccgcattcattgttcatcaacaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0011E08-NNGZy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0011E08.1" temp_strand="-" temp_description="C07HBa0011E08.1  AC232643.1 htgs_phase:1 submitted_to_sgn_as:gi|205831293|gb|AC232643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0011E08, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="72462" stop="70369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72162" g_stop="72047" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72046" i_stop="71973" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71972" g_stop="70669" g_length="1304"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="1420" r_length="1304" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0011E08.1" gen_strand="-" ref_id="SGN-U319039" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0011E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72162" e_stop="72047"/>
          <exon e_start="71972" e_stop="70669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCACCACTCACTTTCATGCTCTGTTTCTTCATCAAGCAATAGAGCATGGAAAAACTCACCATTTGTCTTCTCCTCTTCGCCTTTTCCTTTTCCCTTTTCTCCTCCATTGCAGGTAACAACTCTGTTTCTTTAGTATTTTTCTTACTAGCTTCACATTTAACACAATCTTTTGTGGTGCATTTGCAGATGCTGGTTCAATTGGGATAAACTATGGACGTGTAGCTAACAACTTACCATCAGCAGTTAAAGTGATAGCACTGTTGAAATCTCAAGGCGTGGAGCGTGTTAAGGTCTACGATACTGACCCTGCTGTGCTCAAAGCTCTTTCTGGTTCCGATATCAAAGTTACTGTAAATCTGCCTAATGAGCTGCTCTACAATGCTGCGAAAAGGCCGTCGTTTGCTTACTCATGGGTGGAGAAAAATGTTGCTGCTTATTACCCATCCACCCAAATCGAATCCATTGCTGTTGGAAATGAAGTTTTTGTTGACCCACATAACACGACACGTTTTCTTGTATCCGCCATGAAGAATGTTCATCAAGCTCTTGTTAAATTTAATTTCCATGACAAAATTAAAATCTCTTCTCCGGTTGCTCTGAGTGCTTTGCAGAACTCTTACCCTTCTTCAGCTGGGTCGTTCCGATCCGAATTGGTTGAACCTGTCATTAAGCCCATGCTGGATTTCCTCCGGCAAACGGGATCTTATCTAATGGTGAACTGTTATCCCTTTTTTGCTTACGAGTCGAATTCCGATGTTATTTCTCTTGATTACGCTTTGTTCCGTGAAAACCCCGGCGTTGTGGACGCCGGTAACGGACTTCGTTACTTCAGTCTGTTTGATGCCCAAATCGACGCTGTTTTTGCTGCATTGTCGGCTTTGAAGTACAACGATATAAAAATGGTTGTAACCGAAACTGGCTGGCCATCTAAAGGAGACGACACCGAAATCGGCGCTTCCGTCGACAACGCCGCGTCGTACAACGGAAACCTCGTCCGGCGGATACTTATCGGTGGTGGAACCCCTTTGAGACCGAAAGAAGACCTCACCGTCTTCCTCTTCGCTCTTTTCAACGAGAACAAAAAACCGGGTCCAACTTCCGAGAGAAACTTCGGGTTGTTCTACCCAAATGAGCGAAAAGTCTACAACATACCATTAACAATGGAAGGTTTAAAGCATTACGTTGACCGGCGGTCACCGTCGGCCGGCGAGCAGAGAACGCAGAAAGGCGGGAAGGTGAATGTGTCAGGGCAAACATGGTGCGTAGCGAGTGGAGAAGCGGAGAAGGATCACCTACAAGCAGCTCTAGATTATGCTTGTGGTGAGGGTGGAGCTGATTGCCGTTCGATTCAACCAGGTTCCACGTGTTACAATCCTAACACGTTAGAGGCTCATGCATCATTCGCTTTTAATAGTTATTATCAGAAAAAAGGCCGTGCAATGGGATCGTGTTATTTTGGTGGGGCCGCATTCATTGTTCATCAACAACCT</genome_strand>
        <mrna_strand>TAAAGCACCACTCACTTTCATGCTCTGTTTCTTCATCAAGCAATAGAGCATGGAAAAACTCACCATTTGTCTTCTCCTCTTCGCCTTTTCCTTTTCCCTTTTCTCCTCCATTGCAG..........................................................................ATGCTGGTTCAATTGGGATAAACTATGGACGTGTAGCTAACAACTTACCATCAGCAGTTAAAGTGATAGCACTGTTGAAATCTCAAGGCGTGGAGCGTGTTAAGGTCTACGATACTGACCCTGCTGTGCTCAAAGCTCTTTCTGGTTCCGATATCAAAGTTACTGTAAATCTGCCTAATGAGCTGCTCTACAATGCTGCGAAAAGGCCGTCGTTTGCTTACTCATGGGTGGAGAAAAATGTTGCTGCTTATTACCCATCCACCCAAATCGAATCCATTGCTGTTGGAAATGAAGTTTTTGTTGACCCACATAACACGACACGTTTTCTTGTATCCGCCATGAAGAATGTTCATCAAGCTCTTGTTAAATTTAATTTCCATGACAAAATTAAAATCTCTTCTCCGGTTGCTCTGAGTGCTTTGCAGAACTCTTACCCTTCTTCAGCTGGGTCGTTCCGATCCGAATTGGTTGAACCTGTCATTAAGCCCATGCTGGATTTCCTCCGGCAAACGGGATCTTATCTAATGGTGAACTGTTATCCCTTTTTTGCTTACGAGTCGAATTCCGATGTTATTTCTCTTGATTACGCTTTGTTCCGTGAAAACCCCGGCGTTGTGGACGCCGGTAACGGACTTCGTTACTTCAGTCTGTTTGATGCCCAAATCGACGCTGTTTTTGCTGCATTGTCGGCTTTGAAGTACAACGATATAAAAATGGTTGTAACCGAAACTGGCTGGCCATCTAAAGGAGACGACACCGAAATCGGCGCTTCCGTCGACAACGCCGCGTCGTACAACGGAAACCTCGTCCGGCGGATACTTATCGGTGGAGGAACCCCTTTGAGACCGAAAGAAGACCTCACCGTCTTCCTCTTCGCTCTTTTCAACGAGAACAAAAAACCGGGTCCAACTTCCGAGAGAAACTTCGGGTTGTTCTACCCAAATGAGCGAAAAGTTTACAACATACCATTAACAATGGAAGGTTTAAAGCATTACGTTGACCGGCGGTCACCGGCGGCCGGCGAGCAGAGAACGCAGAAAGGCGGGAAGGTGAATGTGTCAGGGCAAACATGGTGCGTAGCGAGTGGAGAAGCGGAGAAGGATCACCTACAAGCAGCTCTAGATTATGCTTGTGGTGAGGGTGGAGCAGATTGCCGTTCGATTCAACCAGGTTCCACGTGTTACAATCCTAACACGTTAGAGGCTCATGCATCATTCGCTTTTAATAGTTATTATCAGAAAAAAGGCCGTGCGATGGGTTCGTGTTATTTTGGTGGGGCCGCATTCATTGTTCATCAACAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/xeuKWFhXtG" ref_id="SGN-U316272" ref_strand="+" ref_description="SGN-U316272        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | ubiquitin-like protein (SMT3), identical to Ubiquitin-like protein SMT3 SP:P55852 from(Arabidopsis thaliana); identical to cDNA SMT3 protein GI:1707371 | chr4:13497334-13498733 FORWARD | Aliases: F10M23.180, F10M23_180(evalue: 2e-42, score=168) genbank/nr: gi|15236885|ref|NP_194414.1| ubiquitin-like protein (SMT3) [Arabidopsis thaliana] gi|21542462|sp|P55852|SMT3_ARATH Ubiquitin-like protein SMT3 gi|7446817|pir||T04807 SMT3 protein homolog F10M23.180 - Arabidopsis thaliana gi|4455207|emb|CAB36530.1| ubiquitin-like protein [Arabidopsis thaliana] gi|7269536|emb|CAB79539.1| ubiquitin-like protein [Arabidopsis thaliana] gi|18252867|gb|AAL62360.1| ubiquitin-like protein [Arabidopsis thaliana] gi|21592529|gb|AAM64478.1| ubiquitin-like protein [Arabidopsis thaliana] gi|22652842|gb|AAN03845.1| small ubiquitin-like modifier 1 [Arabidopsis thaliana] gi|30725548|gb|AAP37796.1| At4g26840 [Arabidopsis thaliana](evalue: 2e-40, score=168)">
      <seq>aaacacagaaaaatgtctcaagcagcggaggaagacaagaagcccggcggcgatcaagttcacatcaatctcaaagtcaaaagtcaggacgggaatgaagtcttctttaggatcaaaagaagcacccagctaaagaaactcatgaatgcgtattgtgaccggcagtctgtggattttaattcaattgcattcttgtttgatggtcgccgtcttcgaggagagcagactccagatgagctggagatggaggatggcgatgaaattgatgcaatgttgcatcaaactggaggctcaactatttgaggcgtcccatctcttttgtttctaggttgtagactttaatgaatgtagcttgtgctactctaagtactgtagaagcatatatgtggtttcgtcttatgtttaaccgtagctacgtattgcttactgttgcaagaagatttccagttgcttcttgtcgtcaagtttaagtgttgcctgtctcctcaataactgagatactgtgaatctcatgtattttgttgtaactagacaccatgagaaacaagaatcttgttcgatatgtgaacaacatattattccatttccagttaaatcgttcgagatcactatagtatagtgtaatttggttgggttcatacattgcagacaacacagaacccatactgctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0011E08-NNGZy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0011E08.1" temp_strand="+" temp_description="C07HBa0011E08.1  AC232643.1 htgs_phase:1 submitted_to_sgn_as:gi|205831293|gb|AC232643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0011E08, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="76847" stop="80047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77147" g_stop="77233" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77234" i_stop="79020" i_length="1787">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79021" g_stop="79170" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="237" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79171" i_stop="79310" i_length="140">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79311" g_stop="79746" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="673" r_length="436" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="683"/>
      <MATCH_line gen_id="C07HBa0011E08.1" gen_strand="+" ref_id="SGN-U316272" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0011E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77147" e_stop="77233"/>
          <exon e_start="79021" e_stop="79170"/>
          <exon e_start="79311" e_stop="79746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAGAAAAATGTCTCAAGCAGCGGAGGAAGACAAGAAGCCCGGCGGCGATCAAGTTCACATCAATCTCAAAGTCAAAAGTCAGGTCTGCCCCTTTCTCTTTATACTCATCCGCATATTGTCTCCCCTGCTTAGGGTTTTGTTTGATACTTTTTGAATTTTGACATTCAAAATTAGTTTACGTTTGATCGTAAGTTTTTCATGTGTCTCTCAAACTGTTTGACTGTCGAAAAGTAAAAAACAGGTCAAATAAATTGAGACAAAGGGAGTATGTGTTAGATTCTGTCTTCGTTTTGAAGATGAGCATGTCTGGTTTTTTGTATGCATGCTTTAAAATCTGGATTGAGCTTTTAGATCTTCTGTAACTGATTTGTGAGTCTATAATAGGCGTTTGGCTATATTTCACTGTGAAAATTGAAAATAAAAATAGTATTTGTTTTCTAATGAAAAAATGATGTATAACGTGTTTGGCCATGAAGTAAATTAGAGTTGTTTTTGAGTTTTAGCGAGTAATTTCGAGAGAGAAAAACTGAAACTTTTTGTTCTTTTTGGAATTTCTGAAAGCTCTTGAAAAAAGTGAACAAAATTATTATCTTTTCTGGAATTTTACGGCCAAATGTGTAATTGACTTGAATAAAGTAGTAAATTTTGTGCGAAACTGAATGATTAAACGGGTAATCTCATATTAGTTTTGGTGTTTTTGCTAGGTGCATTTAACATGTTTTTGATTTTTGATAATGTGTTACTATTGTTGTTTCGTTTTGTTTGCTTGTTTATTCATTCTTTAAAATTTGGATTGGATGCTGCAGGGGAAGTTTTAAATTTTCTATAACTGACGTGCAAGTCGAAAATTTGTTTGAAAACGTTAACTGAATCATTCGAAACTGAACGCTTGAACAGTTGTCTCATATTTTAGTCAACGGTATTTTGTTATTACCGCTAGAGAATCTTGTGATAGTCTTTATGCAAATACAGAAGCTTATGAAATGCTTCAAGTGTGCCAGGAGTTGGGTGTATGTATCATTGTTTTTGCAAAGAATGTATATTAGTAATAATAATGTATCTGTTTGTGTTTTGAGGTGAAAAAACATTCCTCCGCATCATTAATCGAAGATAATATATGTTTTTCAGACTAATTTCATAGATATTCCCTTAAAAACTCTGGTGTGCATTTTGTGGTTGCAGAAGTCTCTAATTCCTGAGCCATTTACCAAGCTAGGTTTATTATCAATTGTGTCTGATCGAGTAAGATATTGTTTGCTGAGTAGTCTTCTTCCCTTGTGGGGATTCCAGTCATTCTTGTGGGGAAGGGTTATTGTTGGGGGTAAGAGTATAGATGGTAATTGGTAAAGCGACACTTTTTTTCTGTGTTTGTTGTGTTAGATTGAGATAGTTCTATATTTTTGACATTTGAATACATCTATTTGATAGTGTAATAAACCAAGGTGTCTAGGTACAGTGTAACGGATGGTGTTCGCTGAGGATCATGCCTTAGTCATCAATGGTAGGCTTTGATGCTCCGCATAAAATTGCTTGCATCAATTAGTGGTAGACGACTTCCCTTAGTCGTATCTATGTTGTTAGTCATATTAAAATTATGTGTGATGGTTTGGCAGATAAGGTAAGCAGCCCACCTGGAATAAAGTGCATTTGTGTTGAATGTGTAGTTGATCCTACTTACTCTGTCTTCAGATTTCTCTTTGTTTGCTTTGCAATCTGATTGCGGATTGTGATGTTGTGTGTGGTTGATTCCATCTTCCCATCTTATCATAATGGTGACGGGTGCTTGTTAAAGAGAAGTGCCCTCTTGCCTCCCATAACAATTTGGACAACATTGAGAGACTTACATATTTAGCTTTCTATTGGTTGCAGGACGGGAATGAAGTCTTCTTTAGGATCAAAAGAAGCACCCAGCTAAAGAAACTCATGAATGCGTATTGTGACCGGCAGTCTGTGGATTTTAATTCAATTGCATTCTTGTTTGATGGTCGCCGTCTTCGAGGAGAGCAGACTCCAGATGAGGTACCTCTCTCAGACCCATGTTCACACATAAAACAAAAGAAGGAACTAATGATACACAATGTTGGTTTACTCTTATGCTTTATACTTTGCGCTCTTGTGATTAATTCTTTTTCTCTAACAACTTTTCTTCCTTGCTTCAGCTGGAGATGGAGGATGGCGATGAAATTGATGCAATGTTGCATCAAACTGGAGGCTCAACTATTTGAGGCGTCCCATCTCTTTTGTTTCTAGGTTGTAGACTTTAATGAATGTAGCTTGTGCTACTCTAAGTACTGTAGAAGCATATATGTGGTTTCGTCTTATGTTTAACCGTAGCTACGTATTGCTTACTGTTGCAAGAAGATTTCCAGTTGCTTCTTGTCGTCAAGTTTAAGTGTTGCCTGTCTCCTCAATAACTGAGATACTGTGAATCTCATGTATTTTGTTGTAACTAGACACCATGAGAAACAAGAATCTTGTTCGATATGTGAACAACATATTATTCCATTTCCAGTTAAATCGTTCGAGATCACTATAGTATAGTGTAATTTGGTTGGGTTCATACATTGCAGACAACACAGAACCCATACTGCTACA</genome_strand>
        <mrna_strand>AAACACAGAAAAATGTCTCAAGCAGCGGAGGAAGACAAGAAGCCCGGCGGCGATCAAGTTCACATCAATCTCAAAGTCAAAAGTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGGAATGAAGTCTTCTTTAGGATCAAAAGAAGCACCCAGCTAAAGAAACTCATGAATGCGTATTGTGACCGGCAGTCTGTGGATTTTAATTCAATTGCATTCTTGTTTGATGGTCGCCGTCTTCGAGGAGAGCAGACTCCAGATGAG............................................................................................................................................CTGGAGATGGAGGATGGCGATGAAATTGATGCAATGTTGCATCAAACTGGAGGCTCAACTATTTGAGGCGTCCCATCTCTTTTGTTTCTAGGTTGTAGACTTTAATGAATGTAGCTTGTGCTACTCTAAGTACTGTAGAAGCATATATGTGGTTTCGTCTTATGTTTAACCGTAGCTACGTATTGCTTACTGTTGCAAGAAGATTTCCAGTTGCTTCTTGTCGTCAAGTTTAAGTGTTGCCTGTCTCCTCAATAACTGAGATACTGTGAATCTCATGTATTTTGTTGTAACTAGACACCATGAGAAACAAGAATCTTGTTCGATATGTGAACAACATATTATTCCATTTCCAGTTAAATCGTTCGAGATCACTATAGTATAGTGTAATTTGGTTGGGTTCATACATTGCAGACAACACAGAACCCATACTGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/xeuKWFhXtG" ref_id="SGN-U341260" ref_strand="+" ref_description="SGN-U341260        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:13998661-14002826 REVERSE | Aliases: T21L14.9, T21L14_9(evalue: 9e-06, score=47.8) genbank/nr: gi|50913223|ref|XP_468019.1| unknown protein [Oryza sativa (japonica cultivar-group)] >gi|46805359|dbj|BAD16860.1| unknown protein [Oryza sativa (japonica cultivar-group)] >gi|46805336|dbj|BAD16855.1| unknown protein [Oryza sativa (japonica cultivar-group)] (evalue: 9e-33, score=143)">
      <seq>tgcattaagtctttttgaatcactgacatactgctgcggaaaagaaaaaaattgttttttcgatggtcctgtggggtgtttatggctactgatcgcttttgacacgcttcttcattcggctatatctatctctttgtgttatgaagaagccctgtggtgaatttttattttcagacctgagtttttcttcttctgggttgttggatgagttgaatttttcatggaatttcgttgatcccatttttattcatcctgtgattggtggtgcgaatttgaagaggggttcatggggagcattgattatggcaaatgtgtctttcccttgactagtttgcaaatcggggacttgcagtcttatctttcacatcttcacgttttcctcgcccctgagagtaagagattatatatcttggtcgacaaccgtccatggcttagagatcttgtctctaaacctgcacacttatggcaattgatggttaccaagtccaggttatctccctttgcaaataccagagggaggaagcagaggaaagagaatggagatataatggatataaaatctaatccagaattaagcacgagtgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0011E08-NNGZy/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0011E08.1" temp_strand="-" temp_description="C07HBa0011E08.1  AC232643.1 htgs_phase:1 submitted_to_sgn_as:gi|205831293|gb|AC232643.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0011E08, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="85624" stop="83147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85324" g_stop="85072" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85071" i_stop="84956" i_length="116">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84955" g_stop="84869" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="342" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84868" i_stop="83772" i_length="1097">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83771" g_stop="83630" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="484" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83629" i_stop="83551" i_length="79">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83550" g_stop="83447" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="588" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0011E08.1" gen_strand="-" ref_id="SGN-U341260" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0011E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85324" e_stop="85072"/>
          <exon e_start="84955" e_stop="84869"/>
          <exon e_start="83771" e_stop="83630"/>
          <exon e_start="83550" e_stop="83447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTAGTCTTTTCGAATCACTGACATACTGCTGTGG-AAA-AAAAAATTTGTTTTTTCGATGGTCCTGTGGGGTGTTTATGGCTACTGATCGCTTTTGACACGCTTCTTCATTCGGCTATATCTATCTCTTTGTGTTATGAAGAAGCCCTGTGGTGAATTTTTATTTTCAGACCTGAGTTTTTCTTCTTCTGGGTTGTTGGATGAGTTGAATTTTTCATGGAATTTCGTTGATCCCATTTTTATTCATCCTGGTAATTGGAATTTTCTAACTTTTTTTGTGTTCTTCTCAAATTCGATTTTTTACGGGAATTTGAGCATGTGGGTTGTTTTAATTTGTTGGGTTCTTTTTCGAATTTTGATGGAGCAGTGATTGGTGGTGCGAATTTGAAGAGGGGTTCATGGGGAGCATTGATTATGGCAAATGTGTCTTTCCCTTGACTAGTTTGCAAATCGGGTAACAATATTCTTCTCTTTTCAGTATGAATTTGCAACCCGAATTCTGTTAATATAATCTTGTGATATTTCTGTGCTGAGAACTTTTTGCTTCCTGTAAATATACAATAAATCTTGGAGCTTTGTTGCATTTGAAACAAATACTTATATGATAATTATCTGGCTCTTGCTACTCTTTTGTATGTTAGTTAAGTGGAGCTAAGGAGCAAATTTTGTGGAAGATAAATCTTGAATTTTCATTACCTGCTACTTGATGATTTCTAGTTTTCTTATCATGAATAATTTACTTTTACATTTCTCTCTCCAACTCACTTTGTGATGACAAACTTTTTGGTGAGTTTGTGGGAAGTTTGTTAGAGTCCAACTTGCATTAAATTGGCAGGATGTATGTTGTGAAAGATGGTCTTTTTTGGACTTAAATGAGGAAAGTTAGTTCATGCCGGGTGTCGATGAGGAAAATAAGCAATCGCAAACAAAGAGGATTTCCTCAATATTTTTTTTAATGTGAATGGGTTTTTCCATTGTTATAGACCCAGAACCAGCCTGAAAACTACTTCATTTCAAAAAGGAACTTCAGGCTTATTCTCATAACAGATTCATATTAAGAATTTGAGTTCAGGTAGAATGTGTTTGCATCATTGAGGAAGCTGCTTGAAGTTACCATAGGGTAGGCTCTAGGAGAAGTTAAAAGGGTTAGGAGAGGTTGTCTTATTACTAAAGCGAAATCCATGATTTGAACATTGTGGGTTCAAGTTTGAGGTTCTAATGCTTTGCATTTGATTTACTAGGTTCGCAATCTGTAATTTGTACTCATCAAAGTAGATTTTCTAACACATACACAGTTCCGAGCCAAAGCTATTGGGTTTGAATGAATCCATGAGATGTATGCTAGCTCCATTTATGCTTATTGCGTCGCTGGGCAAATAAAAAGATCCTGTGCTGACTAATGTTTATGTAGCTGAATTAGTATCTTGGAGATTTTGATATAGCAGTTAAAATTCATATTAAGTTCTAAATTTATGTATGTTGCTATAAACCATTAGTCGACAGTTGTCTTTTCAGTTGTCTTAATATTTAGATATACTATTTTTTTTACAGGGACTTGCAGTCTTATCTTTCACATCTTCACGTTTTCCTCGCCCCTGAGAGTAAGAGATTATATATCTTGGTCGACAACCGTCCATGGCTTAGAGATCTTGTCTCTAAACCTGCACACTTATGGCAATTGATGGTTACCAAGGTTGGTAGTGCATTATTTCCCTATTTTCCTTTTTATCTTTCCTGTATGTTTAACTAGGAGTTTGTTTTTCCAAATGCAGTCCAGGTTATCTCCCTTTGCAAATACCAGAGGGAGGAAGCAGAGGAAAGAGAATGGAGATATAATGGATATAAAATCTAATCCAGAATTAAGCACGAGTGAATC</genome_strand>
        <mrna_strand>TGCATTAAGTCTTTTTGAATCACTGACATACTGCTGCGGAAAAGAAAAAAATTGTTTTTTCGATGGTCCTGTGGGGTGTTTATGGCTACTGATCGCTTTTGACACGCTTCTTCATTCGGCTATATCTATCTCTTTGTGTTATGAAGAAGCCCTGTGGTGAATTTTTATTTTCAGACCTGAGTTTTTCTTCTTCTGGGTTGTTGGATGAGTTGAATTTTTCATGGAATTTCGTTGATCCCATTTTTATTCATCCTG....................................................................................................................TGATTGGTGGTGCGAATTTGAAGAGGGGTTCATGGGGAGCATTGATTATGGCAAATGTGTCTTTCCCTTGACTAGTTTGCAAATCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGCAGTCTTATCTTTCACATCTTCACGTTTTCCTCGCCCCTGAGAGTAAGAGATTATATATCTTGGTCGACAACCGTCCATGGCTTAGAGATCTTGTCTCTAAACCTGCACACTTATGGCAATTGATGGTTACCAAG...............................................................................TCCAGGTTATCTCCCTTTGCAAATACCAGAGGGAGGAAGCAGAGGAAAGAGAATGGAGATATAATGGATATAAAATCTAATCCAGAATTAAGCACGAGTGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>10</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7357" PGL_stop="5288"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7357" e_stop="6897"/>
            <exon e_start="5675" e_stop="5288"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7357" e_stop="6897" e_length="461"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="6896" i_stop="5676" i_length="1221"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="5675" e_stop="5288" e_length="388"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7357" stop="6897"/>
              <exon start="5675" stop="5288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331176" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTAATAATCTCAACAAACTCTTCATCCCACCCAATTTTATCACGCATATAAACTAAAATCACCAAATTCACTCAAAATCCCAGCTCCACAATGACTTATTACACTCTGATGAGTATAATTCTAAGTCATTATTTGTTACTAGTGACTAAAACATTGGCTGGAAAAGTTCCAGCAATTATAGTGTTCGGCGATTCGTCGGTCGATTCAGGGAATAACAACCAGATCTCCACCGTTCTAAAGAGCAATTTCGAACCGTACGGCCGCGATTTCTACGATAAAAAGGCAACTGGTAGGTTCTGCAATGGGCGAATTCCACCGGATTTTATATCGGAAGGTTTTGGGCTGAGGCCATTTGTTCCAGCTTATTTAGATCCGGCGTTTAGTATATCTGATTTTGCACAAGGTGTTTGTTTTGCTTCTGCTGGTACTGGTTATGATAATGCCACTTCTCATGTGCTC : AATGTGATACCATTATGGAAGGAAGTGGAGTACTACAAAGAATATCAAAAGAAACTAAAAGCATACGCAGGTAAAAAGAAATCGAAATACATAATAAAAGAGTCACTCTATTTAATCAGCATTGGAACAAATGACTTCTTGGAAAATTACTACTCAATGCAAAGCCAACGTTCTTCTCAATACACAGAAGATCAATTTCAAGATTTTCTTCTTCAACTTGCTCGGAACTTCGTGCACCAAATTTATCGCATGGGTGCTAGGAAAATTTCGTTAACTGGAGTTCCTCCAATGGGTTGTTTGCCATTGGAAAGAGCAACAAATTATGTAGGTGGAAATGGAGATGGATGCAATGAGAAATATAATAATGTTGCTAAGCATTTTAATGTTA</gDNA_template>
            <first_frame> H  *  *  S  Q  Q  T  L  H  P  T  Q  F  Y  H  A  Y  K  L  K  S  P  N  S  L  K  I  P  A  P  Q  *  L  I  T  L  *  *  V  *  F  *  V  I  I  C  Y  *  *  L  K  H  W  L  E  K  F  Q  Q  L  *  C  S  A  I  R  R  S  I  Q  G  I  T  T  R  S  P  P  F  *  R  A  I  S  N  R  T  A  A  I  S  T  I  K  R  Q  L  V  G  S  A  M  G  E  F  H  R  I  L  Y  R  K  V  L  G  *  G  H  L  F  Q  L  I  *  I  R  R  L  V  Y  L  I  L  H  K  V  F  V  L  L  L  L  V  L  V  M  I  M  P  L  L  M  C  S :   M  *  Y  H  Y  G  R  K  W  S  T  T  K  N  I  K  R  N  *  K  H  T  Q  V  K  R  N  R  N  T  *  *  K  S  H  S  I  *  S  A  L  E  Q  M  T  S  W  K  I  T  T  Q  C  K  A  N  V  L  L  N  T  Q  K  I  N  F  K  I  F  F  F  N  L  L  G  T  S  C  T  K  F  I  A  W  V  L  G  K  F  R  *  L  E  F  L  Q  W  V  V  C  H  W  K  E  Q  Q  I  M  *  V  E  M  E  M  D  A  M  R  N  I  I  M  L  L  S  I  L  M  L </first_frame>
            <second_frame>  I  N  N  L  N  K  L  F  I  P  P  N  F  I  T  H  I  N  *  N  H  Q  I  H  S  K  S  Q  L  H  N  D  L  L  H  S  D  E  Y  N  S  K  S  L  F  V  T  S  D  *  N  I  G  W  K  S  S  S  N  Y  S  V  R  R  F  V  G  R  F  R  E  *  Q  P  D  L  H  R  S  K  E  Q  F  R  T  V  R  P  R  F  L  R  *  K  G  N  W  *  V  L  Q  W  A  N  S  T  G  F  Y  I  G  R  F  W  A  E  A  I  C  S  S  L  F  R  S  G  V  *  Y  I  *  F  C  T  R  C  L  F  C  F  C  W  Y  W  L  *  *  C  H  F  S  C  A   : Q  C  D  T  I  M  E  G  S  G  V  L  Q  R  I  S  K  E  T  K  S  I  R  R  *  K  E  I  E  I  H  N  K  R  V  T  L  F  N  Q  H  W  N  K  *  L  L  G  K  L  L  L  N  A  K  P  T  F  F  S  I  H  R  R  S  I  S  R  F  S  S  S  T  C  S  E  L  R  A  P  N  L  S  H  G  C  *  E  N  F  V  N  W  S  S  S  N  G  L  F  A  I  G  K  S  N  K  L  C  R  W  K  W  R  W  M  Q  *  E  I  *  *  C  C  *  A  F  *  C   </second_frame>
            <third_frame>   L  I  I  S  T  N  S  S  S  H  P  I  L  S  R  I  *  T  K  I  T  K  F  T  Q  N  P  S  S  T  M  T  Y  Y  T  L  M  S  I  I  L  S  H  Y  L  L  L  V  T  K  T  L  A  G  K  V  P  A  I  I  V  F  G  D  S  S  V  D  S  G  N  N  N  Q  I  S  T  V  L  K  S  N  F  E  P  Y  G  R  D  F  Y  D  K  K  A  T  G  R  F  C  N  G  R  I  P  P  D  F  I  S  E  G  F  G  L  R  P  F  V  P  A  Y  L  D  P  A  F  S  I  S  D  F  A  Q  G  V  C  F  A  S  A  G  T  G  Y  D  N  A  T  S  H  V  L  :  N  V  I  P  L  W  K  E  V  E  Y  Y  K  E  Y  Q  K  K  L  K  A  Y  A  G  K  K  K  S  K  Y  I  I  K  E  S  L  Y  L  I  S  I  G  T  N  D  F  L  E  N  Y  Y  S  M  Q  S  Q  R  S  S  Q  Y  T  E  D  Q  F  Q  D  F  L  L  Q  L  A  R  N  F  V  H  Q  I  Y  R  M  G  A  R  K  I  S  L  T  G  V  P  P  M  G  C  L  P  L  E  R  A  T  N  Y  V  G  G  N  G  D  G  C  N  E  K  Y  N  N  V  A  K  H  F  N  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0011E08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7304" stop="6897"/>
                    <exon start="5675" stop="5289"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKITKFTQNPSSTMTYYTLMSIILSHYLLLVTKTLAGKVPAIIVFGDSSVDSGNNNQISTVLKSNFEPYGRDFYDKKATGRFCNGRIPPDFISEGFGLRPFVPAYLDPAFSISDFAQGVCFASAGTGYDNATSHVLNVIPLWKEVEYYKEYQKKLKAYAGKKKSKYIIKESLYLISIGTNDFLENYYSMQSQRSSQYTEDQFQDFLLQLARNFVHQIYRMGARKISLTGVPPMGCLPLERATNYVGGNGDGCNEKYNNVAKHFNV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8553" PGL_stop="7894"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8553" e_stop="7894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="8553" e_stop="7894" e_length="660"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8553" stop="7894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332756" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCACCCCAACCCCCATACCCATACACCAGTGGTTATCTTCTTCCCCCATCATTCTAATGATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCCCACCGTTCTAATGGTTTCAAAATTCTTAGCATTTTGTTTCATTTATAAATTTTTCGAAAAGATTCTTTTACCCATCTTTCTCTACCAAAAAAAGGAGATGAAGTCAAAAGTTATAATTAATATAAAAGATGATGAAAAAAAAAATTTTCGGGTTAAAGATGGAACTGTACAAGAAGGGGGGGGGGGTGTCGCCATTAATAGAGTTAGAGGAAATGTATGTTTTGTTCCGGTTGAAGGCAGGAAAGTGGGTGTTTAGGTTTTACTTTTTTTTTTCTTCATTTTTTTTACTTTAAAATAATTTTTGTTTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGTGAGTGTATTTCACACATTCTCTACTTTTTATTTATTCTCGAAAAAATGTTCAAATAGTTCAAATTCAGAATGGTTGAAGTGTTCAATAGGTTTTACGTCTAGTTAAAGTATCTAAATGAATAATCGAAACAAATTTGAGTGGCCGCATATGACTTTGGCCTA</gDNA_template>
            <first_frame> P  T  P  T  P  I  P  I  H  Q  W  L  S  S  S  P  I  I  L  M  I  S  K  F  L  V  S  V  V  I  F  F  P  H  R  S  N  G  F  K  I  L  S  I  L  F  H  L  *  I  F  R  K  D  S  F  T  H  L  S  L  P  K  K  G  D  E  V  K  S  Y  N  *  Y  K  R  *  *  K  K  K  F  S  G  *  R  W  N  C  T  R  R  G  G  G  C  R  H  *  *  S  *  R  K  C  M  F  C  S  G  *  R  Q  E  S  G  C  L  G  F  T  F  F  F  L  H  F  F  Y  F  K  I  I  F  V  F  F  Y  F  I  I  *  C  L  N  N  F  L  D  *  K  I  T  H  V  I  I  *  L  V  K  L  T  C  Q  R  E  C  I  S  H  I  L  Y  F  L  F  I  L  E  K  M  F  K  *  F  K  F  R  M  V  E  V  F  N  R  F  Y  V  *  L  K  Y  L  N  E  *  S  K  Q  I  *  V  A  A  Y  D  F  G  L </first_frame>
            <second_frame>  P  P  Q  P  P  Y  P  Y  T  S  G  Y  L  L  P  P  S  F  *  *  F  Q  N  S  *  Y  Q  W  L  S  S  S  P  T  V  L  M  V  S  K  F  L  A  F  C  F  I  Y  K  F  F  E  K  I  L  L  P  I  F  L  Y  Q  K  K  E  M  K  S  K  V  I  I  N  I  K  D  D  E  K  K  N  F  R  V  K  D  G  T  V  Q  E  G  G  G  G  V  A  I  N  R  V  R  G  N  V  C  F  V  P  V  E  G  R  K  V  G  V  *  V  L  L  F  F  F  F  I  F  F  T  L  K  *  F  L  F  F  F  T  L  *  Y  N  V  *  I  I  F  W  I  K  K  *  H  M  S  L  F  D  W  S  N  *  H  V  S  V  S  V  F  H  T  F  S  T  F  Y  L  F  S  K  K  C  S  N  S  S  N  S  E  W  L  K  C  S  I  G  F  T  S  S  *  S  I  *  M  N  N  R  N  K  F  E  W  P  H  M  T  L  A   </second_frame>
            <third_frame>   H  P  N  P  H  T  H  T  P  V  V  I  F  F  P  H  H  S  N  D  F  K  I  L  S  I  S  G  Y  L  L  P  P  P  F  *  W  F  Q  N  S  *  H  F  V  S  F  I  N  F  S  K  R  F  F  Y  P  S  F  S  T  K  K  R  R  *  S  Q  K  L  *  L  I  *  K  M  M  K  K  K  I  F  G  L  K  M  E  L  Y  K  K  G  G  G  V  S  P  L  I  E  L  E  E  M  Y  V  L  F  R  L  K  A  G  K  W  V  F  R  F  Y  F  F  F  S  S  F  F  L  L  *  N  N  F  C  F  F  L  L  Y  N  I  M  F  K  *  F  F  G  L  K  N  N  T  C  H  Y  L  I  G  Q  I  D  M  S  A  *  V  Y  F  T  H  S  L  L  F  I  Y  S  R  K  N  V  Q  I  V  Q  I  Q  N  G  *  S  V  Q  *  V  L  R  L  V  K  V  S  K  *  I  I  E  T  N  L  S  G  R  I  *  L  W  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0011E08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8477" stop="8199"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YQWLSSSPTVLMVSKFLAFCFIYKFFEKILLPIFLYQKKEMKSKVIINIKDDEKKNFRVKDGTVQEGGGGVAINRVRGNVCFVPVEGRKVGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="16802" PGL_stop="14619"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16802" e_stop="16471"/>
            <exon e_start="14706" e_stop="14619"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.977" e_score="0.982"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="16802" e_stop="16471" e_length="332"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="16470" i_stop="14707" i_length="1764"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14706" e_stop="14619" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16802" stop="16471"/>
              <exon start="14706" stop="14619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTATTTTTCATGTTACTTGCTAAAGCAAACGCGAAAATTCCAGCGATAATTGTATTTGGCGATTCATCAGTGGATTCAGGCAATAACAATCATATTCAGACGATTGCTCGGAGCAATTTTATGCCGTACGGACGGGATTTTGCGGGGGGTCGACCGACCGGTCGATTTTCTAACGGGAGAATTACGACTGATTTTATTTCGGAGGCAGCTGGTTTGAAACAAATTGTTCCAGCATATTTGGATCCAGCTTATAATATGTCTGATTTTGCTGTTGGAGTTAGTTTTGCTTCTGCTGGAACTGGATATGATAATGCTACTGCTGATGTTCTG : GGTGTGATACCCTTGTGGAAACAAGTGGAGTACTACAAAGAATACCAAAAGAAACTAAGAGCTTATCTTGGTGATACAAAGGCCAATG</gDNA_template>
            <first_frame> N  Y  F  S  C  Y  L  L  K  Q  T  R  K  F  Q  R  *  L  Y  L  A  I  H  Q  W  I  Q  A  I  T  I  I  F  R  R  L  L  G  A  I  L  C  R  T  D  G  I  L  R  G  V  D  R  P  V  D  F  L  T  G  E  L  R  L  I  L  F  R  R  Q  L  V  *  N  K  L  F  Q  H  I  W  I  Q  L  I  I  C  L  I  L  L  L  E  L  V  L  L  L  L  E  L  D  M  I  M  L  L  L  M  F  W :   V  *  Y  P  C  G  N  K  W  S  T  T  K  N  T  K  R  N  *  E  L  I  L  V  I  Q  R  P  M </first_frame>
            <second_frame>  I  I  F  H  V  T  C  *  S  K  R  E  N  S  S  D  N  C  I  W  R  F  I  S  G  F  R  Q  *  Q  S  Y  S  D  D  C  S  E  Q  F  Y  A  V  R  T  G  F  C  G  G  S  T  D  R  S  I  F  *  R  E  N  Y  D  *  F  Y  F  G  G  S  W  F  E  T  N  C  S  S  I  F  G  S  S  L  *  Y  V  *  F  C  C  W  S  *  F  C  F  C  W  N  W  I  *  *  C  Y  C  *  C  S   : G  C  D  T  L  V  E  T  S  G  V  L  Q  R  I  P  K  E  T  K  S  L  S  W  *  Y  K  G  Q   </second_frame>
            <third_frame>   L  F  F  M  L  L  A  K  A  N  A  K  I  P  A  I  I  V  F  G  D  S  S  V  D  S  G  N  N  N  H  I  Q  T  I  A  R  S  N  F  M  P  Y  G  R  D  F  A  G  G  R  P  T  G  R  F  S  N  G  R  I  T  T  D  F  I  S  E  A  A  G  L  K  Q  I  V  P  A  Y  L  D  P  A  Y  N  M  S  D  F  A  V  G  V  S  F  A  S  A  G  T  G  Y  D  N  A  T  A  D  V  L  :  G  V  I  P  L  W  K  Q  V  E  Y  Y  K  E  Y  Q  K  K  L  R  A  Y  L  G  D  T  K  A  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0011E08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16800" stop="16471"/>
                    <exon start="14706" stop="14620"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFFMLLAKANAKIPAIIVFGDSSVDSGNNNHIQTIARSNFMPYGRDFAGGRPTGRFSNGRITTDFISEAAGLKQIVPAYLDPAYNMSDFAVGVSFASAGTGYDNATADVLGVIPLWKQVEYYKEYQKKLRAYLGDTKAN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="24562" PGL_stop="25209"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24562" e_stop="24674"/>
            <exon e_start="24784" e_stop="25209"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.927" acc_prob="0.959" e_score="0.973"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="24562" e_stop="24674" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.927" acc_prob="0.959">
            <gDNA_intron_boundary i_start="24675" i_stop="24783" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24784" e_stop="25209" e_length="426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24562" stop="24674"/>
              <exon start="24784" stop="25209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346934" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTTCTCTCACACACGCAAATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAATTCCATTCCGGAATCCAAAACAATCAATGTGATCAAAGCTTTTGGACTCTTATAA : AAAAATGGACGGAGAAGATAGGCCGAGGACGATGTGGAGGAGCTTGAAGCAACGGTTGGGATTCACCGGACTGGTCTGCTGTGGATCCTCTTGGAACTTGAGAGTATCAGACGTGACAATGAGAGAAGAAGAGGCCCAACAATTTGAAGCCCAATTATTCGGTGAAGAAGAGCCCATAATCGGGGCCCATCAAGGAAACGTGAACCTCGCTACAGCGTTGGCAGCGGAACGTCGGTACCGGAGCGTGGATGCGACGGCGGAATTGAAGACGCTGATGAGATTGTTTGAGGAAACGGACGGCATAGATGAGGAGAAGAGTCTGAAATGGTACATTAAAGAAGAAGGAAGAGGAGGAATTGATGAAATGTGCTGCGTGTGCATGGAGAGAAATAAAGGCGCAGCGTTTATCCCCTGTGGACATACATA</gDNA_template>
            <first_frame> S  F  L  S  H  T  Q  I  K  K  K  K  K  K  K  K  K  K  K  I  P  F  R  N  P  K  Q  S  M  *  S  K  L  L  D  S  Y  K :   K  M  D  G  E  D  R  P  R  T  M  W  R  S  L  K  Q  R  L  G  F  T  G  L  V  C  C  G  S  S  W  N  L  R  V  S  D  V  T  M  R  E  E  E  A  Q  Q  F  E  A  Q  L  F  G  E  E  E  P  I  I  G  A  H  Q  G  N  V  N  L  A  T  A  L  A  A  E  R  R  Y  R  S  V  D  A  T  A  E  L  K  T  L  M  R  L  F  E  E  T  D  G  I  D  E  E  K  S  L  K  W  Y  I  K  E  E  G  R  G  G  I  D  E  M  C  C  V  C  M  E  R  N  K  G  A  A  F  I  P  C  G  H  T   </first_frame>
            <second_frame>  L  F  S  H  T  R  K  S  R  R  R  R  R  R  R  R  R  R  K  F  H  S  G  I  Q  N  N  Q  C  D  Q  S  F  W  T  L  I   : K  K  W  T  E  K  I  G  R  G  R  C  G  G  A  *  S  N  G  W  D  S  P  D  W  S  A  V  D  P  L  G  T  *  E  Y  Q  T  *  Q  *  E  K  K  R  P  N  N  L  K  P  N  Y  S  V  K  K  S  P  *  S  G  P  I  K  E  T  *  T  S  L  Q  R  W  Q  R  N  V  G  T  G  A  W  M  R  R  R  N  *  R  R  *  *  D  C  L  R  K  R  T  A  *  M  R  R  R  V  *  N  G  T  L  K  K  K  E  E  E  E  L  M  K  C  A  A  C  A  W  R  E  I  K  A  Q  R  L  S  P  V  D  I  H  </second_frame>
            <third_frame>   F  S  L  T  H  A  N  Q  E  E  E  E  E  E  E  E  E  E  N  S  I  P  E  S  K  T  I  N  V  I  K  A  F  G  L  L  *  :  K  N  G  R  R  R  *  A  E  D  D  V  E  E  L  E  A  T  V  G  I  H  R  T  G  L  L  W  I  L  L  E  L  E  S  I  R  R  D  N  E  R  R  R  G  P  T  I  *  S  P  I  I  R  *  R  R  A  H  N  R  G  P  S  R  K  R  E  P  R  Y  S  V  G  S  G  T  S  V  P  E  R  G  C  D  G  G  I  E  D  A  D  E  I  V  *  G  N  G  R  H  R  *  G  E  E  S  E  M  V  H  *  R  R  R  K  R  R  N  *  *  N  V  L  R  V  H  G  E  K  *  R  R  S  V  Y  P  L  W  T  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0011E08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24652" stop="24674"/>
                    <exon start="24784" stop="25207"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKLLDSYKKMDGEDRPRTMWRSLKQRLGFTGLVCCGSSWNLRVSDVTMREEEAQQFEAQLFGEEEPIIGAHQGNVNLATALAAERRYRSVDATAELKTLMRLFEETDGIDEEKSLKWYIKEEGRGGIDEMCCVCMERNKGAAFIPCGHT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="31884" PGL_stop="25559"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31884" e_stop="31428"/>
            <exon e_start="27847" e_stop="27748"/>
            <exon e_start="26351" e_stop="26294"/>
            <exon e_start="26014" e_stop="25908"/>
            <exon e_start="25762" e_stop="25559"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.831" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31884" e_stop="31428" e_length="457"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.831">
            <gDNA_intron_boundary i_start="31427" i_stop="27848" i_length="3580"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27847" e_stop="27748" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27747" i_stop="26352" i_length="1396"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26351" e_stop="26294" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.920" acc_prob="0.949">
            <gDNA_intron_boundary i_start="26293" i_stop="26015" i_length="279"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26014" e_stop="25908" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="25907" i_stop="25763" i_length="145"/>
          </intron>
          <exon e_serial="5" e_score="0.975">
            <gDNA_exon_boundary e_start="25762" e_stop="25559" e_length="204"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31884" stop="31428"/>
              <exon start="27847" stop="27748"/>
              <exon start="26351" stop="26294"/>
              <exon start="26014" stop="25908"/>
              <exon start="25762" stop="25559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328659" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATTTTCAAGAATCCCTCCACCCGGCCAAAACCAAAATTACTAGCACCGGTAGCTATAAAATCACCAAATCTAGCCTTAAATTCTCTCTTGACGCTTCTCCTTCTTCTATAGTCACTTCAAATCGGATCAAATCTAGGCAAAAGTTTCTCCTTTTTCCTCTTCTGGGTCGTTCTTGTTTTTTGTCGATTGAGGCGGACATAGTGAATCAGTTCAGCATGAGGAAGAGAGAGAGGGAAAACCCATGTGGTATTTGTGGGCATTATCACAAGTACGAAGAAGGGGAGCCTTGTGGGGTTTGTGGGCATCGAATGCCTACTGTTTCTGATATGGGTTCTACAATTCAAGTCAGTGCTTTTCCTTCTGAGATCTTGCCGGAGTTTCTGTTTTTGGGAAGCTATGATAATGCTTCTAGAGCTGAGCTTCTTAAGAGTCAAGGGATTTCTCGTGTTCTCAAT : ACTGTACCTGCTTGCCAAAATCTATATAAAAATTCCTTTACTTATCACTGCCTTGGTGATGAGCAAGATTTGCAGTTTGACGATGCTATCCAATTCTTAG : AACAATGTGAAAGGGATAGGGCTCGTGTTCTTGTACATTGCATGTCAGGGAAAAGCAG : GTCACCTGCCATTGTAATTGCTTACCTGATGAAAAGTAGAGGCTGGAAACTTGCACAGAGCTATCAGTGGGTGAAAGATCGGAGGCCTTATGTCGACCTTAATCAAG : GGGTTTACCATCAACTAGAGGCGTATGAACAGAAGATGTTCGGATCACTGGAGAACCAGCCTGCATTTGGCATGCCGGTCTTTTCTTCTCCTGTGCTGCCATCATTGAGCTTTAACTACCCAAAGCCTAGTGATTCAGTTCAAATTCCAGCCTTCAACTTTTCTGGTGCTACATCAATTTTCGCTCGTCCTGATATTGGCATTC</gDNA_template>
            <first_frame> E  F  S  R  I  P  P  P  G  Q  N  Q  N  Y  *  H  R  *  L  *  N  H  Q  I  *  P  *  I  L  S  *  R  F  S  F  F  Y  S  H  F  K  S  D  Q  I  *  A  K  V  S  P  F  S  S  S  G  S  F  L  F  F  V  D  *  G  G  H  S  E  S  V  Q  H  E  E  E  R  E  G  K  P  M  W  Y  L  W  A  L  S  Q  V  R  R  R  G  A  L  W  G  L  W  A  S  N  A  Y  C  F  *  Y  G  F  Y  N  S  S  Q  C  F  S  F  *  D  L  A  G  V  S  V  F  G  K  L  *  *  C  F  *  S  *  A  S  *  E  S  R  D  F  S  C  S  Q   : Y  C  T  C  L  P  K  S  I  *  K  F  L  Y  L  S  L  P  W  *  *  A  R  F  A  V  *  R  C  Y  P  I  L  R :   T  M  *  K  G  *  G  S  C  S  C  T  L  H  V  R  E  K  Q  :  V  T  C  H  C  N  C  L  P  D  E  K  *  R  L  E  T  C  T  E  L  S  V  G  E  R  S  E  A  L  C  R  P  *  S  R :   G  L  P  S  T  R  G  V  *  T  E  D  V  R  I  T  G  E  P  A  C  I  W  H  A  G  L  F  F  S  C  A  A  I  I  E  L  *  L  P  K  A  *  *  F  S  S  N  S  S  L  Q  L  F  W  C  Y  I  N  F  R  S  S  *  Y  W  H   </first_frame>
            <second_frame>  N  F  Q  E  S  L  H  P  A  K  T  K  I  T  S  T  G  S  Y  K  I  T  K  S  S  L  K  F  S  L  D  A  S  P  S  S  I  V  T  S  N  R  I  K  S  R  Q  K  F  L  L  F  P  L  L  G  R  S  C  F  L  S  I  E  A  D  I  V  N  Q  F  S  M  R  K  R  E  R  E  N  P  C  G  I  C  G  H  Y  H  K  Y  E  E  G  E  P  C  G  V  C  G  H  R  M  P  T  V  S  D  M  G  S  T  I  Q  V  S  A  F  P  S  E  I  L  P  E  F  L  F  L  G  S  Y  D  N  A  S  R  A  E  L  L  K  S  Q  G  I  S  R  V  L  N  :  T  V  P  A  C  Q  N  L  Y  K  N  S  F  T  Y  H  C  L  G  D  E  Q  D  L  Q  F  D  D  A  I  Q  F  L   : E  Q  C  E  R  D  R  A  R  V  L  V  H  C  M  S  G  K  S  R :   S  P  A  I  V  I  A  Y  L  M  K  S  R  G  W  K  L  A  Q  S  Y  Q  W  V  K  D  R  R  P  Y  V  D  L  N  Q   : G  V  Y  H  Q  L  E  A  Y  E  Q  K  M  F  G  S  L  E  N  Q  P  A  F  G  M  P  V  F  S  S  P  V  L  P  S  L  S  F  N  Y  P  K  P  S  D  S  V  Q  I  P  A  F  N  F  S  G  A  T  S  I  F  A  R  P  D  I  G  I  </second_frame>
            <third_frame>   I  F  K  N  P  S  T  R  P  K  P  K  L  L  A  P  V  A  I  K  S  P  N  L  A  L  N  S  L  L  T  L  L  L  L  L  *  S  L  Q  I  G  S  N  L  G  K  S  F  S  F  F  L  F  W  V  V  L  V  F  C  R  L  R  R  T  *  *  I  S  S  A  *  G  R  E  R  G  K  T  H  V  V  F  V  G  I  I  T  S  T  K  K  G  S  L  V  G  F  V  G  I  E  C  L  L  F  L  I  W  V  L  Q  F  K  S  V  L  F  L  L  R  S  C  R  S  F  C  F  W  E  A  M  I  M  L  L  E  L  S  F  L  R  V  K  G  F  L  V  F  S  I :   L  Y  L  L  A  K  I  Y  I  K  I  P  L  L  I  T  A  L  V  M  S  K  I  C  S  L  T  M  L  S  N  S  *  :  N  N  V  K  G  I  G  L  V  F  L  Y  I  A  C  Q  G  K  A   : G  H  L  P  L  *  L  L  T  *  *  K  V  E  A  G  N  L  H  R  A  I  S  G  *  K  I  G  G  L  M  S  T  L  I  K  :  G  F  T  I  N  *  R  R  M  N  R  R  C  S  D  H  W  R  T  S  L  H  L  A  C  R  S  F  L  L  L  C  C  H  H  *  A  L  T  T  Q  S  L  V  I  Q  F  K  F  Q  P  S  T  F  L  V  L  H  Q  F  S  L  V  L  I  L  A  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0011E08.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31883" stop="31428"/>
                    <exon start="27847" stop="27748"/>
                    <exon start="26351" stop="26294"/>
                    <exon start="26014" stop="25908"/>
                    <exon start="25762" stop="25560"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFQESLHPAKTKITSTGSYKITKSSLKFSLDASPSSIVTSNRIKSRQKFLLFPLLGRSCFLSIEADIVNQFSMRKRERENPCGICGHYHKYEEGEPCGVCGHRMPTVSDMGSTIQVSAFPSEILPEFLFLGSYDNASRAELLKSQGISRVLNTVPACQNLYKNSFTYHCLGDEQDLQFDDAIQFLEQCERDRARVLVHCMSGKSRSPAIVIAYLMKSRGWKLAQSYQWVKDRRPYVDLNQGVYHQLEAYEQKMFGSLENQPAFGMPVFSSPVLPSLSFNYPKPSDSVQIPAFNFSGATSIFARPDIGI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="50961" PGL_stop="51629"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50961" e_stop="51629"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50961" e_stop="51629" e_length="669"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50961" stop="51629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332360" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGAGCTGCTTCCGACATTGCTTCCTAATCTTCTTTCTACTTTGGTTCGTGTTCAGACTCTATGTGAGGAATGTTCTGACCCGGAGAAGACTCCGGGTAAGCTGTTGATGCAGTCGGACCTTGATATGGCTTCTGGGTGGTTGTCTAAGCAGATCCATCATCTAGACCTTCTTTGCCGTTCTGGTGTGCTTCGTCAGTCTACTGCTATTGTTCTCTCTCACCCTTCGTCGAACTCTACCAAAGACGATTTAGTTCTTTATATTAGAGACGTGTTTACTAGAATTCAGATCGGCGGAGTTGAGTTCAAGAGAAAGGCTTTGGAATCGTTGATTCAGCTGCTTTCTGAGGATGAAAAATCAGCTGGTCTTGTTGCAAAAGAAGGACAAGTTGGGTACTTGATTAATTTACTTGACCTTAATACGGATCCTTCTATACGTGAACAGGCAGTTCTTGCTGTATCAATGCTTGTTTCCATGAGCGAACAGGCAAGAAAATGCGTGTTTGAAGAGGGTGCTTTGGGTCCTTTACTGAGAATCATCGAGTCTGGTTCGGTTACAATGAAGGAAAGAGCTGTCTTGGCAGTGGAATGCATCACAAATGACCCTGAAAATGCTTGGGCAATCTCAGCTTATGGTGGTGTCTCTGTACTCCTAGACTTGTGTAAATCT</gDNA_template>
            <first_frame> N  E  L  L  P  T  L  L  P  N  L  L  S  T  L  V  R  V  Q  T  L  C  E  E  C  S  D  P  E  K  T  P  G  K  L  L  M  Q  S  D  L  D  M  A  S  G  W  L  S  K  Q  I  H  H  L  D  L  L  C  R  S  G  V  L  R  Q  S  T  A  I  V  L  S  H  P  S  S  N  S  T  K  D  D  L  V  L  Y  I  R  D  V  F  T  R  I  Q  I  G  G  V  E  F  K  R  K  A  L  E  S  L  I  Q  L  L  S  E  D  E  K  S  A  G  L  V  A  K  E  G  Q  V  G  Y  L  I  N  L  L  D  L  N  T  D  P  S  I  R  E  Q  A  V  L  A  V  S  M  L  V  S  M  S  E  Q  A  R  K  C  V  F  E  E  G  A  L  G  P  L  L  R  I  I  E  S  G  S  V  T  M  K  E  R  A  V  L  A  V  E  C  I  T  N  D  P  E  N  A  W  A  I  S  A  Y  G  G  V  S  V  L  L  D  L  C  K  S </first_frame>
            <second_frame>  M  S  C  F  R  H  C  F  L  I  F  F  L  L  W  F  V  F  R  L  Y  V  R  N  V  L  T  R  R  R  L  R  V  S  C  *  C  S  R  T  L  I  W  L  L  G  G  C  L  S  R  S  I  I  *  T  F  F  A  V  L  V  C  F  V  S  L  L  L  L  F  S  L  T  L  R  R  T  L  P  K  T  I  *  F  F  I  L  E  T  C  L  L  E  F  R  S  A  E  L  S  S  R  E  R  L  W  N  R  *  F  S  C  F  L  R  M  K  N  Q  L  V  L  L  Q  K  K  D  K  L  G  T  *  L  I  Y  L  T  L  I  R  I  L  L  Y  V  N  R  Q  F  L  L  Y  Q  C  L  F  P  *  A  N  R  Q  E  N  A  C  L  K  R  V  L  W  V  L  Y  *  E  S  S  S  L  V  R  L  Q  *  R  K  E  L  S  W  Q  W  N  A  S  Q  M  T  L  K  M  L  G  Q  S  Q  L  M  V  V  S  L  Y  S  *  T  C  V  N   </second_frame>
            <third_frame>   *  A  A  S  D  I  A  S  *  S  S  F  Y  F  G  S  C  S  D  S  M  *  G  M  F  *  P  G  E  D  S  G  *  A  V  D  A  V  G  P  *  Y  G  F  W  V  V  V  *  A  D  P  S  S  R  P  S  L  P  F  W  C  A  S  S  V  Y  C  Y  C  S  L  S  P  F  V  E  L  Y  Q  R  R  F  S  S  L  Y  *  R  R  V  Y  *  N  S  D  R  R  S  *  V  Q  E  K  G  F  G  I  V  D  S  A  A  F  *  G  *  K  I  S  W  S  C  C  K  R  R  T  S  W  V  L  D  *  F  T  *  P  *  Y  G  S  F  Y  T  *  T  G  S  S  C  C  I  N  A  C  F  H  E  R  T  G  K  K  M  R  V  *  R  G  C  F  G  S  F  T  E  N  H  R  V  W  F  G  Y  N  E  G  K  S  C  L  G  S  G  M  H  H  K  *  P  *  K  C  L  G  N  L  S  L  W  W  C  L  C  T  P  R  L  V  *  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0011E08.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50961" stop="51629"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NELLPTLLPNLLSTLVRVQTLCEECSDPEKTPGKLLMQSDLDMASGWLSKQIHHLDLLCRSGVLRQSTAIVLSHPSSNSTKDDLVLYIRDVFTRIQIGGVEFKRKALESLIQLLSEDEKSAGLVAKEGQVGYLINLLDLNTDPSIREQAVLAVSMLVSMSEQARKCVFEEGALGPLLRIIESGSVTMKERAVLAVECITNDPENAWAISAYGGVSVLLDLCKS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="52189" PGL_stop="54004"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52189" e_stop="52497"/>
            <exon e_start="53566" e_stop="54004"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52189" e_stop="52497" e_length="309"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.925">
            <gDNA_intron_boundary i_start="52498" i_stop="53565" i_length="1068"/>
          </intron>
          <exon e_serial="2" e_score="0.916">
            <gDNA_exon_boundary e_start="53566" e_stop="54004" e_length="439"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52189" stop="52497"/>
              <exon start="53566" stop="54004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346855" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAATAGGAAGGAATTGGTTAAGGACGAGAAGAGTGTGATGAAGTTGGTCCAGATGTTGGATTCCAAGAATGATGCGGTTTCGAAGAAGTTCCCGGTGGCAGTGGTGGCGGCAATCATGGCAGGAGGGAGCCAGGGTTGTCGGAAGCGGCTAGTGGAGGCCGGCGCATACGGACATTTGCAGAAGCTGGCGGAGGCGGAGGTTGTGGGGGCTAAGAAGGCCTTGCAGAGACTCTCAGGCAATAGGCTAAAGAGCATTTTCACAAGGACATGGAGTAATTAGCTAAGCAACTAACCCCCGCCAACGAAGG : GTGGTTGTTTGGATTTTTCCCAACTGTCAAATGTGGAAAACCAACTCATTTCCTTCAAAGAAACCAACAAACAATCACACACTCGGTATACCCCAACTTTAACCTTATACTATATTGTTTTCAATTATTAGAAAAAGAAAAAAAAGGAAGTTGAATTTATTCTAAACTATATAACACATGGCATGGATGCGGTTTTTAGGGAGTATCCTTGTTTGTTTATTTTTTCTCCTCTTTTTTTTTTAATGTTTTGTTTCACCATGTGAAGCTTTGTAAGTGAGTGATAATAGATAGTGCTTGCACCCCCCCCCCCCCCCCCAACCCCCTTTTTCCCCATCCTAGGCATCAGTTGATATTGTATATTCAAAGGTTTGTTTTTCTTGTAATGGCCAAGCCTTAATTACAAAGTGTGCAACTTGTCTCTTAAATTTATCATCTCTTT</gDNA_template>
            <first_frame> R  I  G  R  N  W  L  R  T  R  R  V  *  *  S  W  S  R  C  W  I  P  R  M  M  R  F  R  R  S  S  R  W  Q  W  W  R  Q  S  W  Q  E  G  A  R  V  V  G  S  G  *  W  R  P  A  H  T  D  I  C  R  S  W  R  R  R  R  L  W  G  L  R  R  P  C  R  D  S  Q  A  I  G  *  R  A  F  S  Q  G  H  G  V  I  S  *  A  T  N  P  R  Q  R  R  :  V  V  V  W  I  F  P  N  C  Q  M  W  K  T  N  S  F  P  S  K  K  P  T  N  N  H  T  L  G  I  P  Q  L  *  P  Y  T  I  L  F  S  I  I  R  K  R  K  K  R  K  L  N  L  F  *  T  I  *  H  M  A  W  M  R  F  L  G  S  I  L  V  C  L  F  F  L  L  F  F  F  *  C  F  V  S  P  C  E  A  L  *  V  S  D  N  R  *  C  L  H  P  P  P  P  P  Q  P  P  F  S  P  S  *  A  S  V  D  I  V  Y  S  K  V  C  F  S  C  N  G  Q  A  L  I  T  K  C  A  T  C  L  L  N  L  S  S  L  </first_frame>
            <second_frame>  E  *  E  G  I  G  *  G  R  E  E  C  D  E  V  G  P  D  V  G  F  Q  E  *  C  G  F  E  E  V  P  G  G  S  G  G  G  N  H  G  R  R  E  P  G  L  S  E  A  A  S  G  G  R  R  I  R  T  F  A  E  A  G  G  G  G  G  C  G  G  *  E  G  L  A  E  T  L  R  Q  *  A  K  E  H  F  H  K  D  M  E  *  L  A  K  Q  L  T  P  A  N  E  G :   W  L  F  G  F  F  P  T  V  K  C  G  K  P  T  H  F  L  Q  R  N  Q  Q  T  I  T  H  S  V  Y  P  N  F  N  L  I  L  Y  C  F  Q  L  L  E  K  E  K  K  G  S  *  I  Y  S  K  L  Y  N  T  W  H  G  C  G  F  *  G  V  S  L  F  V  Y  F  F  S  S  F  F  F  N  V  L  F  H  H  V  K  L  C  K  *  V  I  I  D  S  A  C  T  P  P  P  P  P  N  P  L  F  P  H  P  R  H  Q  L  I  L  Y  I  Q  R  F  V  F  L  V  M  A  K  P  *  L  Q  S  V  Q  L  V  S  *  I  Y  H  L  F </second_frame>
            <third_frame>   N  R  K  E  L  V  K  D  E  K  S  V  M  K  L  V  Q  M  L  D  S  K  N  D  A  V  S  K  K  F  P  V  A  V  V  A  A  I  M  A  G  G  S  Q  G  C  R  K  R  L  V  E  A  G  A  Y  G  H  L  Q  K  L  A  E  A  E  V  V  G  A  K  K  A  L  Q  R  L  S  G  N  R  L  K  S  I  F  T  R  T  W  S  N  *  L  S  N  *  P  P  P  T  K   : G  G  C  L  D  F  S  Q  L  S  N  V  E  N  Q  L  I  S  F  K  E  T  N  K  Q  S  H  T  R  Y  T  P  T  L  T  L  Y  Y  I  V  F  N  Y  *  K  K  K  K  K  E  V  E  F  I  L  N  Y  I  T  H  G  M  D  A  V  F  R  E  Y  P  C  L  F  I  F  S  P  L  F  F  L  M  F  C  F  T  M  *  S  F  V  S  E  *  *  *  I  V  L  A  P  P  P  P  P  P  T  P  F  F  P  I  L  G  I  S  *  Y  C  I  F  K  G  L  F  F  L  *  W  P  S  L  N  Y  K  V  C  N  L  S  L  K  F  I  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0011E08.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52191" stop="52469"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRKELVKDEKSVMKLVQMLDSKNDAVSKKFPVAVVAAIMAGGSQGCRKRLVEAGAYGHLQKLAEAEVVGAKKALQRLSGNRLKSIFTRTWSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="72162" PGL_stop="70669"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72162" e_stop="72047"/>
            <exon e_start="71972" e_stop="70669"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72162" e_stop="72047" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72046" i_stop="71973" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="71972" e_stop="70669" e_length="1304"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72162" stop="72047"/>
              <exon start="71972" stop="70669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAGCACCACTCACTTTCATGCTCTGTTTCTTCATCAAGCAATAGAGCATGGAAAAACTCACCATTTGTCTTCTCCTCTTCGCCTTTTCCTTTTCCCTTTTCTCCTCCATTGCAG : ATGCTGGTTCAATTGGGATAAACTATGGACGTGTAGCTAACAACTTACCATCAGCAGTTAAAGTGATAGCACTGTTGAAATCTCAAGGCGTGGAGCGTGTTAAGGTCTACGATACTGACCCTGCTGTGCTCAAAGCTCTTTCTGGTTCCGATATCAAAGTTACTGTAAATCTGCCTAATGAGCTGCTCTACAATGCTGCGAAAAGGCCGTCGTTTGCTTACTCATGGGTGGAGAAAAATGTTGCTGCTTATTACCCATCCACCCAAATCGAATCCATTGCTGTTGGAAATGAAGTTTTTGTTGACCCACATAACACGACACGTTTTCTTGTATCCGCCATGAAGAATGTTCATCAAGCTCTTGTTAAATTTAATTTCCATGACAAAATTAAAATCTCTTCTCCGGTTGCTCTGAGTGCTTTGCAGAACTCTTACCCTTCTTCAGCTGGGTCGTTCCGATCCGAATTGGTTGAACCTGTCATTAAGCCCATGCTGGATTTCCTCCGGCAAACGGGATCTTATCTAATGGTGAACTGTTATCCCTTTTTTGCTTACGAGTCGAATTCCGATGTTATTTCTCTTGATTACGCTTTGTTCCGTGAAAACCCCGGCGTTGTGGACGCCGGTAACGGACTTCGTTACTTCAGTCTGTTTGATGCCCAAATCGACGCTGTTTTTGCTGCATTGTCGGCTTTGAAGTACAACGATATAAAAATGGTTGTAACCGAAACTGGCTGGCCATCTAAAGGAGACGACACCGAAATCGGCGCTTCCGTCGACAACGCCGCGTCGTACAACGGAAACCTCGTCCGGCGGATACTTATCGGTGGTGGAACCCCTTTGAGACCGAAAGAAGACCTCACCGTCTTCCTCTTCGCTCTTTTCAACGAGAACAAAAAACCGGGTCCAACTTCCGAGAGAAACTTCGGGTTGTTCTACCCAAATGAGCGAAAAGTCTACAACATACCATTAACAATGGAAGGTTTAAAGCATTACGTTGACCGGCGGTCACCGTCGGCCGGCGAGCAGAGAACGCAGAAAGGCGGGAAGGTGAATGTGTCAGGGCAAACATGGTGCGTAGCGAGTGGAGAAGCGGAGAAGGATCACCTACAAGCAGCTCTAGATTATGCTTGTGGTGAGGGTGGAGCTGATTGCCGTTCGATTCAACCAGGTTCCACGTGTTACAATCCTAACACGTTAGAGGCTCATGCATCATTCGCTTTTAATAGTTATTATCAGAAAAAAGGCCGTGCAATGGGATCGTGTTATTTTGGTGGGGCCGCATTCATTGTTCATCAACAACCT</gDNA_template>
            <first_frame> *  S  T  T  H  F  H  A  L  F  L  H  Q  A  I  E  H  G  K  T  H  H  L  S  S  P  L  R  L  F  L  F  P  F  L  L  H  C  R :   C  W  F  N  W  D  K  L  W  T  C  S  *  Q  L  T  I  S  S  *  S  D  S  T  V  E  I  S  R  R  G  A  C  *  G  L  R  Y  *  P  C  C  A  Q  S  S  F  W  F  R  Y  Q  S  Y  C  K  S  A  *  *  A  A  L  Q  C  C  E  K  A  V  V  C  L  L  M  G  G  E  K  C  C  C  L  L  P  I  H  P  N  R  I  H  C  C  W  K  *  S  F  C  *  P  T  *  H  D  T  F  S  C  I  R  H  E  E  C  S  S  S  S  C  *  I  *  F  P  *  Q  N  *  N  L  F  S  G  C  S  E  C  F  A  E  L  L  P  F  F  S  W  V  V  P  I  R  I  G  *  T  C  H  *  A  H  A  G  F  P  P  A  N  G  I  L  S  N  G  E  L  L  S  L  F  C  L  R  V  E  F  R  C  Y  F  S  *  L  R  F  V  P  *  K  P  R  R  C  G  R  R  *  R  T  S  L  L  Q  S  V  *  C  P  N  R  R  C  F  C  C  I  V  G  F  E  V  Q  R  Y  K  N  G  C  N  R  N  W  L  A  I  *  R  R  R  H  R  N  R  R  F  R  R  Q  R  R  V  V  Q  R  K  P  R  P  A  D  T  Y  R  W  W  N  P  F  E  T  E  R  R  P  H  R  L  P  L  R  S  F  Q  R  E  Q  K  T  G  S  N  F  R  E  K  L  R  V  V  L  P  K  *  A  K  S  L  Q  H  T  I  N  N  G  R  F  K  A  L  R  *  P  A  V  T  V  G  R  R  A  E  N  A  E  R  R  E  G  E  C  V  R  A  N  M  V  R  S  E  W  R  S  G  E  G  S  P  T  S  S  S  R  L  C  L  W  *  G  W  S  *  L  P  F  D  S  T  R  F  H  V  L  Q  S  *  H  V  R  G  S  C  I  I  R  F  *  *  L  L  S  E  K  R  P  C  N  G  I  V  L  F  W  W  G  R  I  H  C  S  S  T  T  </first_frame>
            <second_frame>  K  A  P  L  T  F  M  L  C  F  F  I  K  Q  *  S  M  E  K  L  T  I  C  L  L  L  F  A  F  S  F  S  L  F  S  S  I  A   : D  A  G  S  I  G  I  N  Y  G  R  V  A  N  N  L  P  S  A  V  K  V  I  A  L  L  K  S  Q  G  V  E  R  V  K  V  Y  D  T  D  P  A  V  L  K  A  L  S  G  S  D  I  K  V  T  V  N  L  P  N  E  L  L  Y  N  A  A  K  R  P  S  F  A  Y  S  W  V  E  K  N  V  A  A  Y  Y  P  S  T  Q  I  E  S  I  A  V  G  N  E  V  F  V  D  P  H  N  T  T  R  F  L  V  S  A  M  K  N  V  H  Q  A  L  V  K  F  N  F  H  D  K  I  K  I  S  S  P  V  A  L  S  A  L  Q  N  S  Y  P  S  S  A  G  S  F  R  S  E  L  V  E  P  V  I  K  P  M  L  D  F  L  R  Q  T  G  S  Y  L  M  V  N  C  Y  P  F  F  A  Y  E  S  N  S  D  V  I  S  L  D  Y  A  L  F  R  E  N  P  G  V  V  D  A  G  N  G  L  R  Y  F  S  L  F  D  A  Q  I  D  A  V  F  A  A  L  S  A  L  K  Y  N  D  I  K  M  V  V  T  E  T  G  W  P  S  K  G  D  D  T  E  I  G  A  S  V  D  N  A  A  S  Y  N  G  N  L  V  R  R  I  L  I  G  G  G  T  P  L  R  P  K  E  D  L  T  V  F  L  F  A  L  F  N  E  N  K  K  P  G  P  T  S  E  R  N  F  G  L  F  Y  P  N  E  R  K  V  Y  N  I  P  L  T  M  E  G  L  K  H  Y  V  D  R  R  S  P  S  A  G  E  Q  R  T  Q  K  G  G  K  V  N  V  S  G  Q  T  W  C  V  A  S  G  E  A  E  K  D  H  L  Q  A  A  L  D  Y  A  C  G  E  G  G  A  D  C  R  S  I  Q  P  G  S  T  C  Y  N  P  N  T  L  E  A  H  A  S  F  A  F  N  S  Y  Y  Q  K  K  G  R  A  M  G  S  C  Y  F  G  G  A  A  F  I  V  H  Q  Q  P </second_frame>
            <third_frame>   K  H  H  S  L  S  C  S  V  S  S  S  S  N  R  A  W  K  N  S  P  F  V  F  S  S  S  P  F  P  F  P  F  S  P  P  L  Q  :  M  L  V  Q  L  G  *  T  M  D  V  *  L  T  T  Y  H  Q  Q  L  K  *  *  H  C  *  N  L  K  A  W  S  V  L  R  S  T  I  L  T  L  L  C  S  K  L  F  L  V  P  I  S  K  L  L  *  I  C  L  M  S  C  S  T  M  L  R  K  G  R  R  L  L  T  H  G  W  R  K  M  L  L  L  I  T  H  P  P  K  S  N  P  L  L  L  E  M  K  F  L  L  T  H  I  T  R  H  V  F  L  Y  P  P  *  R  M  F  I  K  L  L  L  N  L  I  S  M  T  K  L  K  S  L  L  R  L  L  *  V  L  C  R  T  L  T  L  L  Q  L  G  R  S  D  P  N  W  L  N  L  S  L  S  P  C  W  I  S  S  G  K  R  D  L  I  *  W  *  T  V  I  P  F  L  L  T  S  R  I  P  M  L  F  L  L  I  T  L  C  S  V  K  T  P  A  L  W  T  P  V  T  D  F  V  T  S  V  C  L  M  P  K  S  T  L  F  L  L  H  C  R  L  *  S  T  T  I  *  K  W  L  *  P  K  L  A  G  H  L  K  E  T  T  P  K  S  A  L  P  S  T  T  P  R  R  T  T  E  T  S  S  G  G  Y  L  S  V  V  E  P  L  *  D  R  K  K  T  S  P  S  S  S  S  L  F  S  T  R  T  K  N  R  V  Q  L  P  R  E  T  S  G  C  S  T  Q  M  S  E  K  S  T  T  Y  H  *  Q  W  K  V  *  S  I  T  L  T  G  G  H  R  R  P  A  S  R  E  R  R  K  A  G  R  *  M  C  Q  G  K  H  G  A  *  R  V  E  K  R  R  R  I  T  Y  K  Q  L  *  I  M  L  V  V  R  V  E  L  I  A  V  R  F  N  Q  V  P  R  V  T  I  L  T  R  *  R  L  M  H  H  S  L  L  I  V  I  I  R  K  K  A  V  Q  W  D  R  V  I  L  V  G  P  H  S  L  F  I  N  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0011E08.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72116" stop="72047"/>
                    <exon start="71972" stop="70669"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1374</number_coding_nucleotides>
                  <number_encoded_amino_acids>458</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMEKLTICLLLFAFSFSLFSSIADAGSIGINYGRVANNLPSAVKVIALLKSQGVERVKVYDTDPAVLKALSGSDIKVTVNLPNELLYNAAKRPSFAYSWVEKNVAAYYPSTQIESIAVGNEVFVDPHNTTRFLVSAMKNVHQALVKFNFHDKIKISSPVALSALQNSYPSSAGSFRSELVEPVIKPMLDFLRQTGSYLMVNCYPFFAYESNSDVISLDYALFRENPGVVDAGNGLRYFSLFDAQIDAVFAALSALKYNDIKMVVTETGWPSKGDDTEIGASVDNAASYNGNLVRRILIGGGTPLRPKEDLTVFLFALFNENKKPGPTSERNFGLFYPNERKVYNIPLTMEGLKHYVDRRSPSAGEQRTQKGGKVNVSGQTWCVASGEAEKDHLQAALDYACGEGGADCRSIQPGSTCYNPNTLEAHASFAFNSYYQKKGRAMGSCYFGGAAFIVHQQP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="77147" PGL_stop="79746"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77147" e_stop="77233"/>
            <exon e_start="79021" e_stop="79170"/>
            <exon e_start="79311" e_stop="79746"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.954" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.878" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77147" e_stop="77233" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.954" acc_prob="0.995">
            <gDNA_intron_boundary i_start="77234" i_stop="79020" i_length="1787"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79021" e_stop="79170" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.878" acc_prob="0.997">
            <gDNA_intron_boundary i_start="79171" i_stop="79310" i_length="140"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="79311" e_stop="79746" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77147" stop="77233"/>
              <exon start="79021" stop="79170"/>
              <exon start="79311" stop="79746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316272" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACACAGAAAAATGTCTCAAGCAGCGGAGGAAGACAAGAAGCCCGGCGGCGATCAAGTTCACATCAATCTCAAAGTCAAAAGTCAG : GACGGGAATGAAGTCTTCTTTAGGATCAAAAGAAGCACCCAGCTAAAGAAACTCATGAATGCGTATTGTGACCGGCAGTCTGTGGATTTTAATTCAATTGCATTCTTGTTTGATGGTCGCCGTCTTCGAGGAGAGCAGACTCCAGATGAG : CTGGAGATGGAGGATGGCGATGAAATTGATGCAATGTTGCATCAAACTGGAGGCTCAACTATTTGAGGCGTCCCATCTCTTTTGTTTCTAGGTTGTAGACTTTAATGAATGTAGCTTGTGCTACTCTAAGTACTGTAGAAGCATATATGTGGTTTCGTCTTATGTTTAACCGTAGCTACGTATTGCTTACTGTTGCAAGAAGATTTCCAGTTGCTTCTTGTCGTCAAGTTTAAGTGTTGCCTGTCTCCTCAATAACTGAGATACTGTGAATCTCATGTATTTTGTTGTAACTAGACACCATGAGAAACAAGAATCTTGTTCGATATGTGAACAACATATTATTCCATTTCCAGTTAAATCGTTCGAGATCACTATAGTATAGTGTAATTTGGTTGGGTTCATACATTGCAGACAACACAGAACCCATACTGCTACA</gDNA_template>
            <first_frame> K  H  R  K  M  S  Q  A  A  E  E  D  K  K  P  G  G  D  Q  V  H  I  N  L  K  V  K  S  Q  :  D  G  N  E  V  F  F  R  I  K  R  S  T  Q  L  K  K  L  M  N  A  Y  C  D  R  Q  S  V  D  F  N  S  I  A  F  L  F  D  G  R  R  L  R  G  E  Q  T  P  D  E  :  L  E  M  E  D  G  D  E  I  D  A  M  L  H  Q  T  G  G  S  T  I  *  G  V  P  S  L  L  F  L  G  C  R  L  *  *  M  *  L  V  L  L  *  V  L  *  K  H  I  C  G  F  V  L  C  L  T  V  A  T  Y  C  L  L  L  Q  E  D  F  Q  L  L  L  V  V  K  F  K  C  C  L  S  P  Q  *  L  R  Y  C  E  S  H  V  F  C  C  N  *  T  P  *  E  T  R  I  L  F  D  M  *  T  T  Y  Y  S  I  S  S  *  I  V  R  D  H  Y  S  I  V  *  F  G  W  V  H  T  L  Q  T  T  Q  N  P  Y  C  Y  </first_frame>
            <second_frame>  N  T  E  K  C  L  K  Q  R  R  K  T  R  S  P  A  A  I  K  F  T  S  I  S  K  S  K  V  R :   T  G  M  K  S  S  L  G  S  K  E  A  P  S  *  R  N  S  *  M  R  I  V  T  G  S  L  W  I  L  I  Q  L  H  S  C  L  M  V  A  V  F  E  E  S  R  L  Q  M  S :   W  R  W  R  M  A  M  K  L  M  Q  C  C  I  K  L  E  A  Q  L  F  E  A  S  H  L  F  C  F  *  V  V  D  F  N  E  C  S  L  C  Y  S  K  Y  C  R  S  I  Y  V  V  S  S  Y  V  *  P  *  L  R  I  A  Y  C  C  K  K  I  S  S  C  F  L  S  S  S  L  S  V  A  C  L  L  N  N  *  D  T  V  N  L  M  Y  F  V  V  T  R  H  H  E  K  Q  E  S  C  S  I  C  E  Q  H  I  I  P  F  P  V  K  S  F  E  I  T  I  V  *  C  N  L  V  G  F  I  H  C  R  Q  H  R  T  H  T  A  T </second_frame>
            <third_frame>   T  Q  K  N  V  S  S  S  G  G  R  Q  E  A  R  R  R  S  S  S  H  Q  S  Q  S  Q  K  S   : G  R  E  *  S  L  L  *  D  Q  K  K  H  P  A  K  E  T  H  E  C  V  L  *  P  A  V  C  G  F  *  F  N  C  I  L  V  *  W  S  P  S  S  R  R  A  D  S  R  *   : A  G  D  G  G  W  R  *  N  *  C  N  V  A  S  N  W  R  L  N  Y  L  R  R  P  I  S  F  V  S  R  L  *  T  L  M  N  V  A  C  A  T  L  S  T  V  E  A  Y  M  W  F  R  L  M  F  N  R  S  Y  V  L  L  T  V  A  R  R  F  P  V  A  S  C  R  Q  V  *  V  L  P  V  S  S  I  T  E  I  L  *  I  S  C  I  L  L  *  L  D  T  M  R  N  K  N  L  V  R  Y  V  N  N  I  L  F  H  F  Q  L  N  R  S  R  S  L  *  Y  S  V  I  W  L  G  S  Y  I  A  D  N  T  E  P  I  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0011E08.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77147" stop="77233"/>
                    <exon start="79021" stop="79170"/>
                    <exon start="79311" stop="79376"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHRKMSQAAEEDKKPGGDQVHINLKVKSQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGSTI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="85324" PGL_stop="83447"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85324" e_stop="85072"/>
            <exon e_start="84955" e_stop="84869"/>
            <exon e_start="83771" e_stop="83630"/>
            <exon e_start="83550" e_stop="83447"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.887" e_score="0.968"/>
          <exon-intron don_prob="0.981" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="85324" e_stop="85072" e_length="253"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.887">
            <gDNA_intron_boundary i_start="85071" i_stop="84956" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84955" e_stop="84869" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.995">
            <gDNA_intron_boundary i_start="84868" i_stop="83772" i_length="1097"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83771" e_stop="83630" e_length="142"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="83629" i_stop="83551" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83550" e_stop="83447" e_length="104"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85324" stop="85072"/>
              <exon start="84955" stop="84869"/>
              <exon start="83771" stop="83630"/>
              <exon start="83550" stop="83447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341260" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCATTTAGTCTTTTCGAATCACTGACATACTGCTGTGGAAAAAAAAATTTGTTTTTTCGATGGTCCTGTGGGGTGTTTATGGCTACTGATCGCTTTTGACACGCTTCTTCATTCGGCTATATCTATCTCTTTGTGTTATGAAGAAGCCCTGTGGTGAATTTTTATTTTCAGACCTGAGTTTTTCTTCTTCTGGGTTGTTGGATGAGTTGAATTTTTCATGGAATTTCGTTGATCCCATTTTTATTCATCCTG : TGATTGGTGGTGCGAATTTGAAGAGGGGTTCATGGGGAGCATTGATTATGGCAAATGTGTCTTTCCCTTGACTAGTTTGCAAATCGG : GGACTTGCAGTCTTATCTTTCACATCTTCACGTTTTCCTCGCCCCTGAGAGTAAGAGATTATATATCTTGGTCGACAACCGTCCATGGCTTAGAGATCTTGTCTCTAAACCTGCACACTTATGGCAATTGATGGTTACCAAG : TCCAGGTTATCTCCCTTTGCAAATACCAGAGGGAGGAAGCAGAGGAAAGAGAATGGAGATATAATGGATATAAAATCTAATCCAGAATTAAGCACGAGTGAATC</gDNA_template>
            <first_frame> C  I  *  S  F  R  I  T  D  I  L  L  W  K  K  K  F  V  F  S  M  V  L  W  G  V  Y  G  Y  *  S  L  L  T  R  F  F  I  R  L  Y  L  S  L  C  V  M  K  K  P  C  G  E  F  L  F  S  D  L  S  F  S  S  S  G  L  L  D  E  L  N  F  S  W  N  F  V  D  P  I  F  I  H  P   : V  I  G  G  A  N  L  K  R  G  S  W  G  A  L  I  M  A  N  V  S  F  P  *  L  V  C  K  S   : G  T  C  S  L  I  F  H  I  F  T  F  S  S  P  L  R  V  R  D  Y  I  S  W  S  T  T  V  H  G  L  E  I  L  S  L  N  L  H  T  Y  G  N  *  W  L  P  S :   P  G  Y  L  P  L  Q  I  P  E  G  G  S  R  G  K  R  M  E  I  *  W  I  *  N  L  I  Q  N  *  A  R  V  N  </first_frame>
            <second_frame>  A  F  S  L  F  E  S  L  T  Y  C  C  G  K  K  N  L  F  F  R  W  S  C  G  V  F  M  A  T  D  R  F  *  H  A  S  S  F  G  Y  I  Y  L  F  V  L  *  R  S  P  V  V  N  F  Y  F  Q  T  *  V  F  L  L  L  G  C  W  M  S  *  I  F  H  G  I  S  L  I  P  F  L  F  I  L  :  *  L  V  V  R  I  *  R  G  V  H  G  E  H  *  L  W  Q  M  C  L  S  L  D  *  F  A  N  R  :  G  L  A  V  L  S  F  T  S  S  R  F  P  R  P  *  E  *  E  I  I  Y  L  G  R  Q  P  S  M  A  *  R  S  C  L  *  T  C  T  L  M  A  I  D  G  Y  Q   : V  Q  V  I  S  L  C  K  Y  Q  R  E  E  A  E  E  R  E  W  R  Y  N  G  Y  K  I  *  S  R  I  K  H  E  *  I </second_frame>
            <third_frame>   H  L  V  F  S  N  H  *  H  T  A  V  E  K  K  I  C  F  F  D  G  P  V  G  C  L  W  L  L  I  A  F  D  T  L  L  H  S  A  I  S  I  S  L  C  Y  E  E  A  L  W  *  I  F  I  F  R  P  E  F  F  F  F  W  V  V  G  *  V  E  F  F  M  E  F  R  *  S  H  F  Y  S  S  C :   D  W  W  C  E  F  E  E  G  F  M  G  S  I  D  Y  G  K  C  V  F  P  L  T  S  L  Q  I  G :   D  L  Q  S  Y  L  S  H  L  H  V  F  L  A  P  E  S  K  R  L  Y  I  L  V  D  N  R  P  W  L  R  D  L  V  S  K  P  A  H  L  W  Q  L  M  V  T  K  :  S  R  L  S  P  F  A  N  T  R  G  R  K  Q  R  K  E  N  G  D  I  M  D  I  K  S  N  P  E  L  S  T  S  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0011E08.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85091" stop="85072"/>
                    <exon start="84955" stop="84869"/>
                    <exon start="83771" stop="83630"/>
                    <exon start="83550" stop="83449"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHFYSSCDWWCEFEEGFMGSIDYGKCVFPLTSLQIGDLQSYLSHLHVFLAPESKRLYILVDNRPWLRDLVSKPAHLWQLMVTKSRLSPFANTRGRKQRKENGDIMDIKSNPELSTSE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 21 chains have been computed
$ 
$ memory statistics:
$ 21296 bytes spliced alignments in total
$ 10 spliced alignments have been stored
$ 2129 bytes was the average size of a spliced alignment
$ 16560 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1656 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 22 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-09 17:02:40
-->
