<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-04 08:38:24"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366453" ref_strand="+" ref_description="SGN-E366453 [cLPT-1-P8]">
      <seq>aatttcagtttcactaagctttactctgttgtagctgtaattgtgtttttttggccgttcatggcttacgccggccctctccgtcgtgttgtagacacacattggtatcctgcttctgccacgtggtatggtagcccagaaggcgacggtagtactggtggggcatgtgggtatgggtcaatggtggatgtgaaaccgttcagggccagagtaggggcagtgagtccgattttgttcaaaaatggtgaaggatgtggggcttgctataaagtgaagtgtttagaccgttccgtttgttcgagacgagctgcgacggtgattattaccgacgaatgtcccggcgggtactgctccggcggaagagttcacttcgatcttagtggcgccgccttcggccatatggctgtttcaggttacggcggaagcctccgtgaccggtgtgtaatctccatcctctaccgccgaactctatgtaagtacccaggaaagaacatagccttccatgtaaatgaaggctcaacaccttactggctctctcttcttgttgaatttgaagatggagatggagatgttggatccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="+" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="1" stop="1803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="136" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="157" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137" i_stop="296" i_length="160">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="297" g_stop="603" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="464" r_length="307" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="604" i_stop="1385" i_length="782">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1386" g_stop="1503" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="582" r_length="118" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="+" ref_id="SGN-E366453" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="136"/>
          <exon e_start="297" e_stop="603"/>
          <exon e_start="1386" e_stop="1503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCTGTGGTAGCTGTAATTGTGTTTTTTTGGCCGTTCATGGCTTCCGCCGGCCCTCTCCGTCGTGTTGTAGACACACATTGGTATCCTGCTACTGCCACGTGGTATGGTAGCCCAGAAGGCGACGGTAGTACTGGTACGTAAATTCCCAATTTTAGGGTTAAAATTGATTGTTTAGATGTTATAAAATGTAGGTTCTGCGCTCTATCAACTGAGCTATTTAAAATTGTTGGGGTTTTTTTTTTGGGTAAAGTAGAACTGATTTTGTGTTTTTAAATGGTGGAATTTATGTTCAGGTGGGGCATGTGGGTATGGGTCAATGGTGGATGTGAAACCGTTCAGGGCCAGAGTAGGGGCAGTGAGTCCGATTTTGTTCAAAAATGGTGAAGGATGTGGGGCTTGCTATAAAGTGAAGTGTTTAGACCGTTCCGTTTGTTCGAGAAGAGCTGCGACGGTGATTATTACCGATGAATGTCCCGGCGGGTATTGCTCCGGCGGAAGAGTTCACTTCGATCTTAGTGGCGCCGCCTTCGGCCATATGGCTGTTTCAGGTTACGGCGGAAGCCTCCGTGACCGGGGTGTAATCTCCATCCTCTACCGCCGGTGAGTCATTGAAGTGAAGAAAATTTTTTTGTCGTTTTTTATTCTTGTTATAACGGTCTTGTTTTATTTTTTCTATTTTGTTCATTAGTGTTTAGTGGTTTGTGTTTCATTACTCGTATCTCAAAATACTAAATTATATCTTATTTTATTTTTATTAAGTTTATTGACTCAAGCTAAATGAATTTAATTTTAAGATGAAATATTTTTGTATTTGGGTCTCTAAAAATAAATTACGATAACTATTTTGAGACGGAAGAAGTATGTCATCAAGTTTTTGACATGGCAGTGTGCTATTTTTGTTGACAATGACACCCTCTGTTCAGTGACAATGTTGGGGTTATTTCTGTCAATTTTTTGTCATTTACATTTTAGTATGATTAAAAATTCTTTTAATAATTTGCCCATATTCACAGTTTCACACACAGGAAATAGTGAATTGTTTTCTGTTTTCTGGTGTGTTGTTTCTACTTATTTTTATCCTTTTTGGTCAAAAACTTCACTGCTCTTTTCTTGGTTTGCATAAATTTAAGTCTGACTGCTGACCCCACTTTTCCTCTGACCATATTTATTTCTATTTTTGTGGTGTCCGACTAGCTTGCTCGTATCACGATTAAAAAAAATAAAGAGTCTATTATTTCTTACCCGTATACATATTGGATTATTTTGTTCATTAAAGTTCGAACAGAAGGAAAGATTGTTAAATGTTTTCTTAAAATTGAATTTATGATTCTCAATTACTATTAGATTACATTCATAATACAATTTTGTGGTTTAATTTGTAGAACTCTATGTAAGTACCCTGGAAAGAACATAGCCTTCCATGTAAATGAAGGCTCAACACCTTACTGGCTCTCTCTTCTTGTTGAATTTGAAGATGGAGATGGAGATGTTGGATCCATG</genome_strand>
        <mrna_strand>TACTCTGTTGTAGCTGTAATTGTGTTTTTTTGGCCGTTCATGGCTTACGCCGGCCCTCTCCGTCGTGTTGTAGACACACATTGGTATCCTGCTTCTGCCACGTGGTATGGTAGCCCAGAAGGCGACGGTAGTACTG................................................................................................................................................................GTGGGGCATGTGGGTATGGGTCAATGGTGGATGTGAAACCGTTCAGGGCCAGAGTAGGGGCAGTGAGTCCGATTTTGTTCAAAAATGGTGAAGGATGTGGGGCTTGCTATAAAGTGAAGTGTTTAGACCGTTCCGTTTGTTCGAGACGAGCTGCGACGGTGATTATTACCGACGAATGTCCCGGCGGGTACTGCTCCGGCGGAAGAGTTCACTTCGATCTTAGTGGCGCCGCCTTCGGCCATATGGCTGTTTCAGGTTACGGCGGAAGCCTCCGTGACCGGTGTGTAATCTCCATCCTCTACCGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTATGTAAGTACCCAGGAAAGAACATAGCCTTCCATGTAAATGAAGGCTCAACACCTTACTGGCTCTCTCTTCTTGTTGAATTTGAAGATGGAGATGGAGATGTTGGATCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339751" ref_strand="+" ref_description="SGN-E339751 [cTOE-16-H19]">
      <seq>aatcacacaccattgttttaccaaagaatatattaagcatcttcttctttttttgagtattaaaagtttatctccatcttggcttgtttgtccaaagtaatattatgcactttatatcactttttttttttacatgcttttcctttttatcactgttgttcaatagtgcaaaaagttgccttaaaaagtacaatgcaaaaaaagtgtccttttttcctcatttttttttattgagggtgtgtttgataaggaatcttttgtatgtttggttggtcaaaacgttttggacaacatggaaaaaacaagttccttaaaaatcaagaatagtttttccggtgggagtaggaaaatctagttccataaatagcatttcaagctcattgtctcctcccccatcccaacgcgctaccccttaaagagtttttctagatttcatatatgttactgagacgatatcttcttgcttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="+" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="1809" stop="2876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2109" g_stop="2576" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="+" ref_id="SGN-E339751" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2109" e_stop="2576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCACACACCATTGTTTTACCAAAGAATATATTAAGCATCTTCTTCTTTTTTTGAGTATTAAAAGTTTATCTCCATCTTGGCTTGTTTGTCCAAAGTAATATTATGCACTTTATATCAC-TTTTTTTTTTACATGCTTTTCCTTTTTATCACTGTTGTTCAATAGTGCAAAAAGTTGCCTTAAAAAGTACAATGCAAAAAAAGTGTCCTTTTTTCCTCATTTTTTTTTATTGAGGGTGTGTTTGATAAGGAATCTTTTGTATGTTTGGTTGGTCAAAACGTTTTGGACAACATGGAAAAAACAAGTTCCTTAAAAATCAAGAATAGTTTTTCCGGTGGGAGTAGGAAAATCTAGTTCCATAAATAGCATTTCAAGCTCATTGTCTCCTCCCCCATCCCAACGCGCTACCCCTTAAAGAGTTTTTCTAGATTTCATATATGTTACTGAGACGATATCTTCTTGCTTACT</genome_strand>
        <mrna_strand>AATCACACACCATTGTTTTACCAAAGAATATATTAAGCATCTTCTTCTTTTTTTGAGTATTAAAAGTTTATCTCCATCTTGGCTTGTTTGTCCAAAGTAATATTATGCACTTTATATCACTTTTTTTTTTTACATGCTTTTCCTTTTTATCACTGTTGTTCAATAGTGCAAAAAGTTGCCTTAAAAAGTACAATGCAAAAAAAGTGTCCTTTTTTCCTCATTTTTTTTTATTGAGGGTGTGTTTGATAAGGAATCTTTTGTATGTTTGGTTGGTCAAAACGTTTTGGACAACATGGAAAAAACAAGTTCCTTAAAAATCAAGAATAGTTTTTCCGGTGGGAGTAGGAAAATCTAGTTCCATAAATAGCATTTCAAGCTCATTGTCTCCTCCCCCATCCCAACGCGCTACCCCTTAAAGAGTTTTTCTAGATTTCATATATGTTACTGAGACGATATCTTCTTGCTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338150" ref_strand="+" ref_description="SGN-E338150 [cTOE-13-H11]">
      <seq>aatcacacaccattgttttaccaaagaatatattaagcatcttcttctttttttgagtattaaaagtttatctccatcttggcttgtttgtccaaagtaatattatgcactttatatcactttttttttttacatgcttttcctttttatcactgttgttcaatagtgcaaaaagttgccttaaaaagtacaatgcaaaaaaagtgtccttttttcctcatttttttttattgagggtgtgtttgataaggaatcttttgtatgtttggttggtcaaaacgttttggacaacatggaaaaaacaagttccttaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="+" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="1809" stop="2725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2109" g_stop="2425" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="+" ref_id="SGN-E338150" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2109" e_stop="2425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCACACACCATTGTTTTACCAAAGAATATATTAAGCATCTTCTTCTTTTTTTGAGTATTAAAAGTTTATCTCCATCTTGGCTTGTTTGTCCAAAGTAATATTATGCACTTTATATCAC-TTTTTTTTTTACATGCTTTTCCTTTTTATCACTGTTGTTCAATAGTGCAAAAAGTTGCCTTAAAAAGTACAATGCAAAAAAAGTGTCCTTTTTTCCTCATTTTTTTTTATTGAGGGTGTGTTTGATAAGGAATCTTTTGTATGTTTGGTTGGTCAAAACGTTTTGGACAACATGGAAAAAACAAGTTCCTTAAAAAT</genome_strand>
        <mrna_strand>AATCACACACCATTGTTTTACCAAAGAATATATTAAGCATCTTCTTCTTTTTTTGAGTATTAAAAGTTTATCTCCATCTTGGCTTGTTTGTCCAAAGTAATATTATGCACTTTATATCACTTTTTTTTTTTACATGCTTTTCCTTTTTATCACTGTTGTTCAATAGTGCAAAAAGTTGCCTTAAAAAGTACAATGCAAAAAAAGTGTCCTTTTTTCCTCATTTTTTTTTATTGAGGGTGTGTTTGATAAGGAATCTTTTGTATGTTTGGTTGGTCAAAACGTTTTGGACAACATGGAAAAAACAAGTTCCTTAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372939" ref_strand="+" ref_description="SGN-E372939 [TUS-32-N1](-)">
      <seq>ggggtcattttgtgcagggacatgttgatgggactggtgagattgttgagctcaaaactgaaggggattctttgtgggtgaaggtgaagactgctaaagagattttgaggtacattgtgccaaaaggattcattgctgtggatgggactagtttgactgttgtcgatgtggttgatgaagaaggctgttttaacttcatgttggtggcgtacacgcagcagaatgtggtgattccattgaagaaagtggggcagaaggttaatcttgaggtggatatattgggaaagtatgtggagaggctttttagtagtggctttgtggattccatcaaatcttcatgaaaaggttgttactttgtgcttcattttatctgtgtaacttgctttgacagaattttgtatcttgaatttcaaagatgctgctttcccaattgtctctaggtgtatttcgagataatgtttcagcgaaataaaataaactatatccccgtgactcgggcttgagtcaaagcaaaagtatgtgaattttacacttaaatttagtaatacggcaaaaacttgagcagcaactatgaaggcatattttatgtatgattgtactgatgtgttaatcttcctggtttcacatagtgtaaacatcaatgaaaagccgacgcgaatatttagttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="24737" stop="23463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24437" g_stop="23771" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="668" polyA_stop="682"/>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E372939" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24437" e_stop="23771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTCATTTTGTGCAGGGACATGTTGATGGGACTGGTGAGATTGTTGAGCTCAAAACTGAAGGGGATTCTTTGTGGGTGAAGGTGAAGACTGCTAAAGAGATTTTGAGGTACATTGTGCCAAAAGGATTCATTGCTGTGGATGGGACTAGTTTGACTGTTGTCGATGTGGTTGATGAAGAAGGCTGTTTTAACTTCATGTTGGTGGCGTACACGCAGCAGAATGTGGTGATTCCATTGAAGAAAGTGGGGCAGAAGGTTAATCTTGAGGTGGATATATTGGGAAAGTATGTGGAGAGGCTTCTTAGTAGTGGCTTTGTGGATTCCATCAAATCTTCATGAAAAGGTTGTTACTTTGTGCTTCATTTTATCTGTGTAACTTGCTTTGACAGAATTTTGTATCTTGAATTTCAGAGATGCTGCTTTCCCAATTGTCTCTAGGTGTATTTCGAGATAATGTTTCAGCGAAATAGAATAAACTATATCACCGTGACTCGGGCTTGAGTCAAAGCAAAAGTATGTGAATTTTACACTTAAATTTAGTAATACGGCAAAAACTTGAGCAGCAACTATGAAGGCATATTTTATGTATGATTGTACTGATGTGTTAATCTTCCTGGTTTCACATAGTGTAAACATCAATGAAAAGCAGACGCGAATATTTAGTT</genome_strand>
        <mrna_strand>GGGGTCATTTTGTGCAGGGACATGTTGATGGGACTGGTGAGATTGTTGAGCTCAAAACTGAAGGGGATTCTTTGTGGGTGAAGGTGAAGACTGCTAAAGAGATTTTGAGGTACATTGTGCCAAAAGGATTCATTGCTGTGGATGGGACTAGTTTGACTGTTGTCGATGTGGTTGATGAAGAAGGCTGTTTTAACTTCATGTTGGTGGCGTACACGCAGCAGAATGTGGTGATTCCATTGAAGAAAGTGGGGCAGAAGGTTAATCTTGAGGTGGATATATTGGGAAAGTATGTGGAGAGGCTTTTTAGTAGTGGCTTTGTGGATTCCATCAAATCTTCATGAAAAGGTTGTTACTTTGTGCTTCATTTTATCTGTGTAACTTGCTTTGACAGAATTTTGTATCTTGAATTTCAAAGATGCTGCTTTCCCAATTGTCTCTAGGTGTATTTCGAGATAATGTTTCAGCGAAATAAAATAAACTATATCCCCGTGACTCGGGCTTGAGTCAAAGCAAAAGTATGTGAATTTTACACTTAAATTTAGTAATACGGCAAAAACTTGAGCAGCAACTATGAAGGCATATTTTATGTATGATTGTACTGATGTGTTAATCTTCCTGGTTTCACATAGTGTAAACATCAATGAAAAGCCGACGCGAATATTTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378702" ref_strand="+" ref_description="SGN-E378702 [TUS-32-N1]">
      <seq>tggaattcagtgttgggttggcgccggagacactaaggaagacttctttgatcgaattagaacaagggtctctggtgaatctggagagggctttgaggcctagtactagaatggggggtcattttgtgcagggacatgttgatgggactggtgagattgttgagctcaaaactgaaggggattctttgtgggtgaaggtgaagactgctaaagagattttgaggtacattgtgccaaaaggattcattgctgtggatgggactagtttgactgttgtcgatgtggttgatgaagaaggctgttttaacttcatgttggtggcgtacacgcagcagaatgtggtgattccattgaagaaagtggggcagaaggttaatcttgaggtggatatattgggaaagtatgtggagaggcttcttagtagtggctttgtggattccatcaaatcttcatgaaaaggttgttactttgtgcttcattttatctgtgtaacttgctttgacagaattttgtatcttgaatttcagagatgctgctttcccaattgtctctaggtgtatttcgagantatgtttcagcgaaatagaaataactatatcaccgtgactcgggcttgagtcaaagcaaaagtatgtgaattttacacttaaatttagtaatacggcaaaaacttgagcagcaactatgaaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="24851" stop="23560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24551" g_stop="23860" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E378702" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24551" e_stop="23860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTCAGTGTTGGGTTGGCGCCGGAGACACTAAGGAAGACTTCTTTGATCGAATTAGAACAAGGGTCTCTGGTGAATCTGGAGAGGGCTTTGAGGCCTAGTACTAGAATGGGGGGTCATTTTGTGCAGGGACATGTTGATGGGACTGGTGAGATTGTTGAGCTCAAAACTGAAGGGGATTCTTTGTGGGTGAAGGTGAAGACTGCTAAAGAGATTTTGAGGTACATTGTGCCAAAAGGATTCATTGCTGTGGATGGGACTAGTTTGACTGTTGTCGATGTGGTTGATGAAGAAGGCTGTTTTAACTTCATGTTGGTGGCGTACACGCAGCAGAATGTGGTGATTCCATTGAAGAAAGTGGGGCAGAAGGTTAATCTTGAGGTGGATATATTGGGAAAGTATGTGGAGAGGCTTCTTAGTAGTGGCTTTGTGGATTCCATCAAATCTTCATGAAAAGGTTGTTACTTTGTGCTTCATTTTATCTGTGTAACTTGCTTTGACAGAATTTTGTATCTTGAATTTCAGAGATGCTGCTTTCCCAATTGTCTCTAGGTGTATTTCGAGATAATGTTTCAGCGAAATAGAATAAACTATATCACCGTGACTCGGGCTTGAGTCAAAGCAAAAGTATGTGAATTTTACACTTAAATTTAGTAATACGGCAAAAACTTGAGCAGCAACTATGAAGGC</genome_strand>
        <mrna_strand>TGGAATTCAGTGTTGGGTTGGCGCCGGAGACACTAAGGAAGACTTCTTTGATCGAATTAGAACAAGGGTCTCTGGTGAATCTGGAGAGGGCTTTGAGGCCTAGTACTAGAATGGGGGGTCATTTTGTGCAGGGACATGTTGATGGGACTGGTGAGATTGTTGAGCTCAAAACTGAAGGGGATTCTTTGTGGGTGAAGGTGAAGACTGCTAAAGAGATTTTGAGGTACATTGTGCCAAAAGGATTCATTGCTGTGGATGGGACTAGTTTGACTGTTGTCGATGTGGTTGATGAAGAAGGCTGTTTTAACTTCATGTTGGTGGCGTACACGCAGCAGAATGTGGTGATTCCATTGAAGAAAGTGGGGCAGAAGGTTAATCTTGAGGTGGATATATTGGGAAAGTATGTGGAGAGGCTTCTTAGTAGTGGCTTTGTGGATTCCATCAAATCTTCATGAAAAGGTTGTTACTTTGTGCTTCATTTTATCTGTGTAACTTGCTTTGACAGAATTTTGTATCTTGAATTTCAGAGATGCTGCTTTCCCAATTGTCTCTAGGTGTATTTCGAGANTATGTTTCAGCGAAATAGAAATAACTATATCACCGTGACTCGGGCTTGAGTCAAAGCAAAAGTATGTGAATTTTACACTTAAATTTAGTAATACGGCAAAAACTTGAGCAGCAACTATGAAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372940" ref_strand="+" ref_description="SGN-E372940 [TUS-32-N1]">
      <seq>tggaattcagtgttgggttggcgccggagacactaaggaagacttctttgatcgaattagaacaagggtctctggtgaatctggagagggctttgaggcctagtactagaatggggggtcattttgtgcagggacatgttgatgggactggtgagattgttgagctcaaaactgaaggggattctttgtgggtgaaggtgaagactgctaaagagattttgaggtacattgtgccaaaaggattcattgctgtggatgggactagtttgactgttgtcgatgtggttgatgaagaaggctgttttaacttcatgttggtggcgtacacgcagcagaatgtggtgattccattgaagaaagtggggcagaaggttaatcttgaggtggatatattgggaaagtatgtggagaggcttcttagtagtggctttgtggattccatcaaatcttcatgaaaaggttgttactttgtgcttcattttatctgtgtaacttgctttgacagaattttgtatcttgaatttcagagatgctgctttcccaattgtctctaggtgtatttcgagataatgtttcagcgaaatagaataaactatatcaccgtgactcgggcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="24851" stop="23635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24551" g_stop="23935" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E372940" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24551" e_stop="23935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTCAGTGTTGGGTTGGCGCCGGAGACACTAAGGAAGACTTCTTTGATCGAATTAGAACAAGGGTCTCTGGTGAATCTGGAGAGGGCTTTGAGGCCTAGTACTAGAATGGGGGGTCATTTTGTGCAGGGACATGTTGATGGGACTGGTGAGATTGTTGAGCTCAAAACTGAAGGGGATTCTTTGTGGGTGAAGGTGAAGACTGCTAAAGAGATTTTGAGGTACATTGTGCCAAAAGGATTCATTGCTGTGGATGGGACTAGTTTGACTGTTGTCGATGTGGTTGATGAAGAAGGCTGTTTTAACTTCATGTTGGTGGCGTACACGCAGCAGAATGTGGTGATTCCATTGAAGAAAGTGGGGCAGAAGGTTAATCTTGAGGTGGATATATTGGGAAAGTATGTGGAGAGGCTTCTTAGTAGTGGCTTTGTGGATTCCATCAAATCTTCATGAAAAGGTTGTTACTTTGTGCTTCATTTTATCTGTGTAACTTGCTTTGACAGAATTTTGTATCTTGAATTTCAGAGATGCTGCTTTCCCAATTGTCTCTAGGTGTATTTCGAGATAATGTTTCAGCGAAATAGAATAAACTATATCACCGTGACTCGGGCTTGA</genome_strand>
        <mrna_strand>TGGAATTCAGTGTTGGGTTGGCGCCGGAGACACTAAGGAAGACTTCTTTGATCGAATTAGAACAAGGGTCTCTGGTGAATCTGGAGAGGGCTTTGAGGCCTAGTACTAGAATGGGGGGTCATTTTGTGCAGGGACATGTTGATGGGACTGGTGAGATTGTTGAGCTCAAAACTGAAGGGGATTCTTTGTGGGTGAAGGTGAAGACTGCTAAAGAGATTTTGAGGTACATTGTGCCAAAAGGATTCATTGCTGTGGATGGGACTAGTTTGACTGTTGTCGATGTGGTTGATGAAGAAGGCTGTTTTAACTTCATGTTGGTGGCGTACACGCAGCAGAATGTGGTGATTCCATTGAAGAAAGTGGGGCAGAAGGTTAATCTTGAGGTGGATATATTGGGAAAGTATGTGGAGAGGCTTCTTAGTAGTGGCTTTGTGGATTCCATCAAATCTTCATGAAAAGGTTGTTACTTTGTGCTTCATTTTATCTGTGTAACTTGCTTTGACAGAATTTTGTATCTTGAATTTCAGAGATGCTGCTTTCCCAATTGTCTCTAGGTGTATTTCGAGATAATGTTTCAGCGAAATAGAATAAACTATATCACCGTGACTCGGGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291371" ref_strand="+" ref_description="SGN-E291371 [cLET-2-N11]">
      <seq>ggtgaatctggagagggctttgaggcctagtactagaatggggggtcattttgtgcagggacatgttgatgggactggtgagattgttgagctcaaaactgaaggggattctttgtgggtgaaggtgaagactgctaaagagattttgaggtacattgtgccaaaaggattcattgctgtggatgggactagtttgactgttgacgatgtggttgatgaagaaggctgttttaacttcatgttggtggcgtacacgcagcagaatgtggtgattccattgaagaaagtggggcacaaggttaatcttgaggtggatatattgggaaagtatgtggagaggcttcttactagtggctttgtggattccatcaaatcttcatgaaaagagatgctgctttcccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="24778" stop="23782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24478" g_stop="24093" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24092" i_stop="24025" i_length="68">
            <donor d_prob="0.835" d_score="0.98"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24024" g_stop="24008" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="403" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E291371" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24478" e_stop="24093"/>
          <exon e_start="24024" e_stop="24008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAATCTGGAGAGGGCTTTGAGGCCTAGTACTAGAATGGGGGGTCATTTTGTGCAGGGACATGTTGATGGGACTGGTGAGATTGTTGAGCTCAAAACTGAAGGGGATTCTTTGTGGGTGAAGGTGAAGACTGCTAAAGAGATTTTGAGGTACATTGTGCCAAAAGGATTCATTGCTGTGGATGGGACTAGTTTGACTGTTGTCGATGTGGTTGATGAAGAAGGCTGTTTTAACTTCATGTTGGTGGCGTACACGCAGCAGAATGTGGTGATTCCATTGAAGAAAGTGGGGCAGAAGGTTAATCTTGAGGTGGATATATTGGGAAAGTATGTGGAGAGGCTTCTTAGTAGTGGCTTTGTGGATTCCATCAAATCTTCATGAAAAGGTTGTTACTTTGTGCTTCATTTTATCTGTGTAACTTGCTTTGACAGAATTTTGTATCTTGAATTTCAGAGATGCTGCTTTCCCAA</genome_strand>
        <mrna_strand>GGTGAATCTGGAGAGGGCTTTGAGGCCTAGTACTAGAATGGGGGGTCATTTTGTGCAGGGACATGTTGATGGGACTGGTGAGATTGTTGAGCTCAAAACTGAAGGGGATTCTTTGTGGGTGAAGGTGAAGACTGCTAAAGAGATTTTGAGGTACATTGTGCCAAAAGGATTCATTGCTGTGGATGGGACTAGTTTGACTGTTGACGATGTGGTTGATGAAGAAGGCTGTTTTAACTTCATGTTGGTGGCGTACACGCAGCAGAATGTGGTGATTCCATTGAAGAAAGTGGGGCACAAGGTTAATCTTGAGGTGGATATATTGGGAAAGTATGTGGAGAGGCTTCTTACTAGTGGCTTTGTGGATTCCATCAAATCTTCATGAAAAG....................................................................AGATGCTGCTTTCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332321" ref_strand="+" ref_description="SGN-E332321 [cTOD-17-P1]">
      <seq>aaaacttagcatttcagcagagaacaagaaagagccgatggcgacaatttcattcaaatttgcttctccttcaaagccctcaaacccttcgatcgctcccaaaaaccctacaattttcaatctactacccactccatcgaatccccagctcaaaagagccttctttctcaaatctcctgcaatttctcccatctttatcagggctctaaagccccaacaatgtcgttcttcttccactccaatcacttccctttttaccggcatagttgaagaaatgggtcagattaaacaactgggttatgataaacccgacagtttcaccatgaaaatccaagcaaaactcattcttgaagatatcaatctcggcgacagcatttccgtcaacggaacttgtttaacagtagctgagttcgatacccagaagttggaattcagtgttgggttggcgccggagacactaaggaagacttctttgatcgaattagaacaagggtctctggtgaatctggagagggctttgaggcctagtactagaatggggggtcattttgtgcagggacatgttgatgggactggtgagattgttgagctcaaactgaaggggattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="25276" stop="24065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24976" g_stop="24365" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E332321" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24976" e_stop="24365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTTAGCATTTCAGCAGAGAACAAGAAAGAGCCGATGGCGACAATTTCATTCAAATTTGCTTCTCCTTCAAAGCCCTCAAACCCTTCGATCGCTCCCAAAAACCCTACAATTTTCAATCTACTACCCACTCCATCGAATCCCCAGCTCAAAAGAGCCTTCTTTCTCAAATCTCCTGCAATTTCTCCCATCTTTATCAGGGCTCTAAAGCCCCAACAATGTCGTTCTTCTTCCACTCCAATCACTTCCCTTTTTACCGGCATAGTTGAAGAAATGGGTCAGATTAAACAACTGGGTTATGATAAACCCGACAGTTTCACCATGAAAATCCAAGCAAAACTCATTCTTGAAGATATCAATCTCGGCGACAGCATTTCCGTCAACGGAACTTGTTTAACAGTAGCTGAGTTCGATACCCAGAAGTTGGAATTCAGTGTTGGGTTGGCGCCGGAGACACTAAGGAAGACTTCTTTGATCGAATTAGAACAAGGGTCTCTGGTGAATCTGGAGAGGGCTTTGAGGCCTAGTACTAGAATGGGGGGTCATTTTGTGCAGGGACATGTTGATGGGACTGGTGAGATTGTTGAGCTCAAAACTGAAGGGGATTCTTT</genome_strand>
        <mrna_strand>AAAACTTAGCATTTCAGCAGAGAACAAGAAAGAGCCGATGGCGACAATTTCATTCAAATTTGCTTCTCCTTCAAAGCCCTCAAACCCTTCGATCGCTCCCAAAAACCCTACAATTTTCAATCTACTACCCACTCCATCGAATCCCCAGCTCAAAAGAGCCTTCTTTCTCAAATCTCCTGCAATTTCTCCCATCTTTATCAGGGCTCTAAAGCCCCAACAATGTCGTTCTTCTTCCACTCCAATCACTTCCCTTTTTACCGGCATAGTTGAAGAAATGGGTCAGATTAAACAACTGGGTTATGATAAACCCGACAGTTTCACCATGAAAATCCAAGCAAAACTCATTCTTGAAGATATCAATCTCGGCGACAGCATTTCCGTCAACGGAACTTGTTTAACAGTAGCTGAGTTCGATACCCAGAAGTTGGAATTCAGTGTTGGGTTGGCGCCGGAGACACTAAGGAAGACTTCTTTGATCGAATTAGAACAAGGGTCTCTGGTGAATCTGGAGAGGGCTTTGAGGCCTAGTACTAGAATGGGGGGTCATTTTGTGCAGGGACATGTTGATGGGACTGGTGAGATTGTTGAGCTC-AAACTGAAGGGGATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213846" ref_strand="+" ref_description="SGN-E213846 [cLEC-76-J13]">
      <seq>aaacttagcatttcagcagagaacaagaaagagccgatggcgacaatttcattcaaatttgcttctccttcaaagccctcaaacccttcgatcgctcccaaaaaccctacaattttcaatctactacccactccatcgaatccccagctcaaaagagccttctttctcaaatctcctgcaatttctcccatctttatcagggctctaaagccccaacaatgtcgttcttcttccactccaatcacttccctttttaccggcatagttgaagaaatgggtcagattaaacaactgggttatgataaacccgacagtttcaccatgaaaatccaagcaaaactcattcttgaagatatcaatctcggcgacagcatttccgtcaacggaacttgtttaacagtagctgagttcgatacccagaagttggaattcagtgttgggttggcgccggagacactaaggaagacttctttgatcgaattagaacaagggtctctggtgaatctggagagggctttgaggcctagtactagaatggggggtcattttgtgcagggacatgttgatgggactggtgagattgttgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="25275" stop="24087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24975" g_stop="24387" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E213846" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24975" e_stop="24387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTAGCATTTCAGCAGAGAACAAGAAAGAGCCGATGGCGACAATTTCATTCAAATTTGCTTCTCCTTCAAAGCCCTCAAACCCTTCGATCGCTCCCAAAAACCCTACAATTTTCAATCTACTACCCACTCCATCGAATCCCCAGCTCAAAAGAGCCTTCTTTCTCAAATCTCCTGCAATTTCTCCCATCTTTATCAGGGCTCTAAAGCCCCAACAATGTCGTTCTTCTTCCACTCCAATCACTTCCCTTTTTACCGGCATAGTTGAAGAAATGGGTCAGATTAAACAACTGGGTTATGATAAACCCGACAGTTTCACCATGAAAATCCAAGCAAAACTCATTCTTGAAGATATCAATCTCGGCGACAGCATTTCCGTCAACGGAACTTGTTTAACAGTAGCTGAGTTCGATACCCAGAAGTTGGAATTCAGTGTTGGGTTGGCGCCGGAGACACTAAGGAAGACTTCTTTGATCGAATTAGAACAAGGGTCTCTGGTGAATCTGGAGAGGGCTTTGAGGCCTAGTACTAGAATGGGGGGTCATTTTGTGCAGGGACATGTTGATGGGACTGGTGAGATTGTTGAGC</genome_strand>
        <mrna_strand>AAACTTAGCATTTCAGCAGAGAACAAGAAAGAGCCGATGGCGACAATTTCATTCAAATTTGCTTCTCCTTCAAAGCCCTCAAACCCTTCGATCGCTCCCAAAAACCCTACAATTTTCAATCTACTACCCACTCCATCGAATCCCCAGCTCAAAAGAGCCTTCTTTCTCAAATCTCCTGCAATTTCTCCCATCTTTATCAGGGCTCTAAAGCCCCAACAATGTCGTTCTTCTTCCACTCCAATCACTTCCCTTTTTACCGGCATAGTTGAAGAAATGGGTCAGATTAAACAACTGGGTTATGATAAACCCGACAGTTTCACCATGAAAATCCAAGCAAAACTCATTCTTGAAGATATCAATCTCGGCGACAGCATTTCCGTCAACGGAACTTGTTTAACAGTAGCTGAGTTCGATACCCAGAAGTTGGAATTCAGTGTTGGGTTGGCGCCGGAGACACTAAGGAAGACTTCTTTGATCGAATTAGAACAAGGGTCTCTGGTGAATCTGGAGAGGGCTTTGAGGCCTAGTACTAGAATGGGGGGTCATTTTGTGCAGGGACATGTTGATGGGACTGGTGAGATTGTTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253752" ref_strand="+" ref_description="SGN-E253752 [cLEG-32-G12]">
      <seq>agaacaagaaagagtcgatggcgacattttcattcaaatttgcttgtccttcaaagccctcaaacccttcgatcgctcccaaaaaccctacaattttcaatctactacccactccatcgaatccccagctcaaaagagccttctttctcaaatctcctgcaatttctcccatctttatcagggctctaaagccccaacaatgtcgttcttcttccactccaatcacttccctttttaccggcatagttgaagaaatgggtcagattaaacaactgggttatgataaacccgacagtttcaccatgaaaatccaagcaaaactcattcttgaagatatcaatctcggcgacagcatttccgtcaacggaacttgtttaacagtagctgagttcgatacccagaagttggaattcagtgttgggttggcgccggagacactaaggaagacttctttgatcgaattagaacaagggtctctggtgaatctggagagggctttgaggcctagtactagaatggggggtcattttgtgcagggacatgttgatgggactggtgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="25256" stop="24096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24956" g_stop="24396" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E253752" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24956" e_stop="24396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACAAGAAAGAGCCGATGGCGACAATTTCATTCAAATTTGCTTCTCCTTCAAAGCCCTCAAACCCTTCGATCGCTCCCAAAAACCCTACAATTTTCAATCTACTACCCACTCCATCGAATCCCCAGCTCAAAAGAGCCTTCTTTCTCAAATCTCCTGCAATTTCTCCCATCTTTATCAGGGCTCTAAAGCCCCAACAATGTCGTTCTTCTTCCACTCCAATCACTTCCCTTTTTACCGGCATAGTTGAAGAAATGGGTCAGATTAAACAACTGGGTTATGATAAACCCGACAGTTTCACCATGAAAATCCAAGCAAAACTCATTCTTGAAGATATCAATCTCGGCGACAGCATTTCCGTCAACGGAACTTGTTTAACAGTAGCTGAGTTCGATACCCAGAAGTTGGAATTCAGTGTTGGGTTGGCGCCGGAGACACTAAGGAAGACTTCTTTGATCGAATTAGAACAAGGGTCTCTGGTGAATCTGGAGAGGGCTTTGAGGCCTAGTACTAGAATGGGGGGTCATTTTGTGCAGGGACATGTTGATGGGACTGGTGAGA</genome_strand>
        <mrna_strand>AGAACAAGAAAGAGTCGATGGCGACATTTTCATTCAAATTTGCTTGTCCTTCAAAGCCCTCAAACCCTTCGATCGCTCCCAAAAACCCTACAATTTTCAATCTACTACCCACTCCATCGAATCCCCAGCTCAAAAGAGCCTTCTTTCTCAAATCTCCTGCAATTTCTCCCATCTTTATCAGGGCTCTAAAGCCCCAACAATGTCGTTCTTCTTCCACTCCAATCACTTCCCTTTTTACCGGCATAGTTGAAGAAATGGGTCAGATTAAACAACTGGGTTATGATAAACCCGACAGTTTCACCATGAAAATCCAAGCAAAACTCATTCTTGAAGATATCAATCTCGGCGACAGCATTTCCGTCAACGGAACTTGTTTAACAGTAGCTGAGTTCGATACCCAGAAGTTGGAATTCAGTGTTGGGTTGGCGCCGGAGACACTAAGGAAGACTTCTTTGATCGAATTAGAACAAGGGTCTCTGGTGAATCTGGAGAGGGCTTTGAGGCCTAGTACTAGAATGGGGGGTCATTTTGTGCAGGGACATGTTGATGGGACTGGTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243101" ref_strand="+" ref_description="SGN-E243101 [cLEE-2-C1]">
      <seq>caaattacatatcctcaacaacaacacttcaacaaattacatatcctcaacaagaatagttcaacaaattatatatccgccataacaagctcaatattaatcaatcacaagttctgcagaaaggcaataagaagatcgagaaaatacgatatcaagttcactaatgataagtgtgtaatgcaatggaatgcaatgtcaagtataatgatgcatgtctgacctagtgatatacacccgctgtctctcagtccgggacccttgggggacatatctgtccatgcatctgtcgcggcgcacgacacgatcctcgataatagtaaccatcacggcgcgcgatacgttcctcgaaatatagtatccatcgcggcgcgcgatacgtccctcgaaatggtacatcctcttaagtacccattatttctcaatgcacataacacttgccacaaccaatgcctcagaataatgcagatgacaagttcacacatataatgaggagatgaccattttcataacatcctacagttcacaaccacacaaacatcaagttacatcaacaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="27779" stop="26635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27479" g_stop="26935" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="557" r_length="544" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E243101" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27479" e_stop="26935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATAACAACAGTTAGACAAGTTAAATATCCTCAACAACAACACTTTAACAAATTACATATCCGCAATAACAAGCTCAATATTGATCAATCACAAGTTCCGCAGAAAGGCAATCAGAAGATCAGCAAAACACGATATCAAATTCACTAATGATAAGTATATGCAATGAAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGATGTCTCTCAGTCGGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGACCCTCGAT-ATAGTAACCATCACGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGTGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACTCATTCTTTTTCAATGCACATAACACTTGTGACAACCAATGCGTCAGAATAATGCAGATGACAAGTTCACACAAATAATGAGGAGATGACCACTTTCATAACATCGCACACTTCACAACCACACAAACATGAAGTCACATCAACAATGA</genome_strand>
        <mrna_strand>CTCAACAACAACACTTCAACAAATTACATATCCTCAACAAGAATAGTTCAACAAATTATATATCCGCCATAACAAGCTCAATATTAATCAATCACAAGTTCTGCAGAAAGGCAATAAGAAGATCGAGAAAATACGATATCAAGTTCACTAATGATAAG--TGTGTAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATATACACCCGCTGTCTCTCAGTCCGGGACCCTTGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGATCCTCGATAATAGTAACCATCACGGCGCGCGATACGTTCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTATTTCTCAATGCACATAACACTTGCCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTTCATAACATCCTACAGTTCACAACCACACAAACATCAAGTTACATCAACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733389" ref_strand="+" ref_description="SGN-E733389 [LB04DA04]">
      <seq>cggcacgagggctcggtatggctacaaaagggaagctgatgttatgatggctaaagcattgcaggagtgccccaacagtggcattctttgggctgcttcaattgaaatggcgcctcgacctcaaagaaaaaccaagagctctgacgctttaaagaagtgtgatcatgatcctcatgttattgctgctgtagctaagctcttttggcaggagaggaaagtagataaagcaagaaattggttcaatagggcagtgacccttgcaccagatattggtgatttctgggcattgtatttcaaatttgaacagcagcatggagcagaagagcagaggagcgatgtgctgaagcgatgtgttgctgcagagccaaagcatggtgaaaaatggcaagctacatcaaaggccgtagagaactctcatgaaccaactgaaagcatattgaagaaggtggtagccacactaaagaaggaggagaatttggctgaaaataaccacaactaatctgctgtagtgcatgagtcaatgtacttgataatctagagagatttataggttaggagacagtagttaaaacatccttatttttgttttacttcaaatggttggatcttggttgtatttgtcacctttcttgagcttaaaaaattgcaattttccatttctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="+" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="31150" stop="32404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31441" g_stop="32113" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="+" ref_id="SGN-E733389" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31441" e_stop="32113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGCTGA-AGCTAGGCATGGCTACAAAAGGGAAGCTGATGTTATGATGGCTAAAGCATTGCAGGAGTGCCCCAACAGTGGCATTCTTTGGGCTGCTTCAATTGAAATGGCGCCTCGACCTCAAAGAAAAACCAAGAGCTCTGACGCTTTAAAGAAGTGTGATCATGATCCTCATGTTATTGCTGCTGTAGCTAAGCTCTTTTGGCAGGAGAGGAAAGTAGATAAAGCAAGAAATTGGTTCAATAGGGCAGTGACCCTTGCACCAGATATTGGTGATTTCTGGGCATTGTATTTCAAATTTGAACAGCAGCATGGAGCAGAAGAGCAGAGGAGCGATGTGCTGAAGCGATGTGTTGCTGCAGAGCCAAAGCATGGTGAAAAATGGCAAGCTACATCAAAGGCCGTAGAGAACTCTCATGAACCAACTGAAAGCATATTGAAGAAGGTGGTAGCCACACTAAAGAAGGAGGAGAATTTGGCTGAAAATAACCACAACTAATCTGCTGTAGTGCATGAGTCAATGTACTTGATAATCTAGAGAGATTTATAGGTTAGGAGACAGTAGTTAAAACATCCTTATTTTTGTTTTACTTCAAATGGTTGGATCTTGGTTGTATTTGTCACCTTTCTTGAGCTTAAAAAATTGCAATTTTCCATTTCTCATATTGTTCTCA</genome_strand>
        <mrna_strand>CGGCACGAGGGCTCGGTATGGCTACAAAAGGGAAGCTGATGTTATGATGGCTAAAGCATTGCAGGAGTGCCCCAACAGTGGCATTCTTTGGGCTGCTTCAATTGAAATGGCGCCTCGACCTCAAAGAAAAACCAAGAGCTCTGACGCTTTAAAGAAGTGTGATCATGATCCTCATGTTATTGCTGCTGTAGCTAAGCTCTTTTGGCAGGAGAGGAAAGTAGATAAAGCAAGAAATTGGTTCAATAGGGCAGTGACCCTTGCACCAGATATTGGTGATTTCTGGGCATTGTATTTCAAATTTGAACAGCAGCATGGAGCAGAAGAGCAGAGGAGCGATGTGCTGAAGCGATGTGTTGCTGCAGAGCCAAAGCATGGTGAAAAATGGCAAGCTACATCAAAGGCCGTAGAGAACTCTCATGAACCAACTGAAAGCATATTGAAGAAGGTGGTAGCCACACTAAAGAAGGAGGAGAATTTGGCTGAAAATAACCACAACTAATCTGCTGTAGTGCATGAGTCAATGTACTTGATAATCTAGAGAGATTTATAGGTTAGGAGACAGTAGTTAAAACATCCTTATTTTTGTTTTACTTCAAATGGTTGGATCTTGGTTGTATTTGTCACCTTTCTTGAGCTTAAAAAATTGCAATTTTCCATTTCTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746603" ref_strand="+" ref_description="SGN-E746603 [GI|47104147]">
      <seq>acccaccaccccaaacccccaaccacaccttcttaagcagagtgttgtaacaaagagttgagtgaaaaaatcattaggtgcaaaatggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagtgtgggcaccaaccatctcggacatttccttctttcaaggttgctgctagatgacctcaagcaatcagattatccacaaaagcgccttataattgttggctccataacaggaaacacaaatactttggctggaaatgtgccaccaaaggctaatcttggagatctacgaggactttcaggagggttgaatagtttaaactgctcacccatgattgatggaggagaatttgatggtgccaaagcctataaagacagcaaagtctgtaacatgcttaccatgcaagagtaccataggcgtttccacgaggagactggcattgcctttgcttccctctatcccggctgcattgctgaaactggtttatttaggaatcacattcccttgttcaggactctcttcccaccatttcaaaagtacataaccaaaggctatgtatctgaagaagaagcaggaaaaagacttgcacaggtagtacgtgatccaagtctttcaaaatccggtgtctactggagttggaacagtacctcctcctcttttgagaaccagctgtcgaaggaagccagtgatgcagagaaggcacgcaagctatgggaggtcagtgagaagctcgttggactggcttaaatggagtggcaagggtgcgacttgttttcccatccaagtcaggagaagatgtatatatgagatcaccagagttcttttatcaaaatacttattggtatttgttgttgattgattttaccaacagagttttcaggtaggtaggcaacaagttcttgtaatgatatggacatctcaattctaagaccatgtgcataaccagcaactcttaaactggagggacctgcaaagaattgatcagatcagagagtatatgatccatcatgttatttaccaaatttagataagacgactggtatttctaaatatccattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39300" stop="35604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39000" g_stop="38863" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="237" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37398" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="769" r_length="532" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37397" i_stop="36845" i_length="553">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36844" g_stop="36486" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="1128" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36485" i_stop="36375" i_length="111">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36374" g_stop="35904" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1129" r_stop="1599" r_length="471" r_score="0.998"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35903" i_stop="35683" i_length="221">
            <donor d_prob="0.061" d_score="0.98"/>
            <acceptor a_prob="0.489" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35682" g_stop="35672" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1600" r_stop="1610" r_length="11" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E746603" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39000" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37398"/>
          <exon e_start="36844" e_stop="36486"/>
          <exon e_start="36374" e_stop="35904"/>
          <exon e_start="35682" e_stop="35672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAGGTACTGATCTGAAACTTAAAAGGTTATGCTCTCATGTCCAGCATACTCGTTTTCTTTGAGCAACTTAATTTCACGTCACCTAATGTAAGATAGGAACAAATTATCAAAAGCTGTAAAAGTTAGAATTCTACAAAGTAGCATGTAGATGTTCTTACTTATAAGTAATTTAGCACTAACATATGTAGATATACACAAGACAGAGAATGGAGAAACTACACGTCATGATGTGTCAAATAAAACGGTGGACAGCATATATGGGGGAAAAACAGTGTTTTGTTCTTTGAGCTTCTGAAGTACATACTTTAGTAGCACTTAACGCTATTTGACTTTAGTACGAGTATTATCTTCCCCCAAAAAATAAAATGCTGGACATCCTGTACAACTTCTTGTGAAATAGTAGATCTTAGCGCTATTTTAGACTTTAGTACGAATATTACCTTCCCCCAAAAAATAAAATGCTGGACATCATGTACAACTTCTCCTTGTGAATTATCATTTTATTAAAGGAAATCTGAGATGATTGAAATCTAATACTATAATTTTTCTGCTACAGGAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAGAGTACCATAGGCGTTTCCACGAGGAGACTGGCATTGCCTTTGCTTCCCTCTATCCCGGCTGCATTGCTGAAACTGGTTTATTTAGGAATCACATTCCCTTGTTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACCAAAGGCTATGTATCTGAAGAAGAAGCAGGAAAAAGACTTGCACAGGTTAGTCAAAATTAGCAAACTTGGACACCTTTATCCCTAGCATTTTCACAGATTGAATCCATTAGCTAGCACATGAGAAGTACCACTGAATCATCTGAGCTAAATCCACAGGTAGTACGTGATCCAAGTCTTTCAAAATCCGGTGTCTACTGGAGTTGGAACAGTACCTCCTCCTCTTTTGAGAACCAGCTGTCGAAGGAAGCCAGTGATGCAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAGAAGCTCGTTGGACTGGCTTAAATGGAGTGGCAAGGGTGCGACTTGTTTTCCCATCCAAGTCAGGAGAAGATGTATATATGAGATCACCAGAGTTCTTTTATCAAAATACTTATTGGTATTTGTTGTTGATTGATTTTACCAACAGAGTTTTCAGGTAGGTAGGCAACAAGTTCTTGTAATGATATGGACATCTCAATTCTAAGACCATGTGCATAACCAGCAACTCTTAAACTGGAGGGACCTGCAAAGAATTGATCAGATCAGAGAGTATATGATCCATCATGTTATTTACCAAATTTAGATAAGACGACTGGTATTTCTAAATATCCATTAATAGCTAGCTTCGTTACTTGTTACCATTCATATTTCATTTGCGTATAATAAAAATATTGAATCATAGAGAACTAATATCTTCGAATTGTTCTGATATGAGCAGCAAAAAAATACTAGTATATATGTTTAGGGTTAAGGCATAATTTCCCTATGACTGTAAGCATGCATATAAAATAATCACTATATATATAAATCATTCAATACATAACATGTTCACCATGTAGTAAAATAAGCA</genome_strand>
        <mrna_strand>ACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAGAGTACCATAGGCGTTTCCACGAGGAGACTGGCATTGCCTTTGCTTCCCTCTATCCCGGCTGCATTGCTGAAACTGGTTTATTTAGGAATCACATTCCCTTGTTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACCAAAGGCTATGTATCTGAAGAAGAAGCAGGAAAAAGACTTGCACAG...............................................................................................................GTAGTACGTGATCCAAGTCTTTCAAAATCCGGTGTCTACTGGAGTTGGAACAGTACCTCCTCCTCTTTTGAGAACCAGCTGTCGAAGGAAGCCAGTGATGCAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAGAAGCTCGTTGGACTGGCTTAAATGGAGTGGCAAGGGTGCGACTTGTTTTCCCATCCAAGTCAGGAGAAGATGTATATATGAGATCACCAGAGTTCTTTTATCAAAATACTTATTGGTATTTGTTGTTGATTGATTTTACCAACAGAGTTTTCAGGTAGGTAGGCAACAAGTTCTTGTAATGATATGGACATCTCAATTCTAAGACCATGTGCATAACCAGCAACTCTTAAACTGGAGGGACCTGCAAAGAATTGATCAGATCAGAGAGTATATGATCCATCATGTTATTTACCAAATTTAGATAAGACGACTGGTATTTCTAAATATCCATTAAAA.............................................................................................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393402" ref_strand="+" ref_description="SGN-E393402 [TUS-38-N5](-)">
      <seq>gcagagaaggcacgcaagctatgggaggtcagtgagaagctcgttggactggcttaaatggagtggcaagggtgggacttgttttcccatccaagtcaggggaagatgtatatatgagatcaccagagtttttttatcaaaatacttattggtatttgttgttgattgattttaccaacagagttttcaggtaggtaggcaacaagtttttgtaatgatatggacatttcaattttaagaccatgtgcataaccagcaatttttaaactggagggacctgcaaagaattgatcagatcagagagtatatgatccatcatgttatttaccaaatttagataagaggactggtatttttaaatatccattaatagctaggttcgttactttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="36575" stop="35584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36275" g_stop="35888" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="424"/>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E393402" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36275" e_stop="35888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAGAAGCTCGTTGGACTGGCTTAAATGGAGTGGCAAGGGTGCGACTTGTTTTCCCATCCAAGTCAGGAGAAGATGTATATATGAGATCACCAGAGTTCTTTTATCAAAATACTTATTGGTATTTGTTGTTGATTGATTTTACCAACAGAGTTTTCAGGTAGGTAGGCAACAAGTTCTTGTAATGATATGGACATCTCAATTCTAAGACCATGTGCATAACCAGCAACTCTTAAACTGGAGGGACCTGCAAAGAATTGATCAGATCAGAGAGTATATGATCCATCATGTTATTTACCAAATTTAGATAAGACGACTGGTATTTCTAAATATCCATTAATAGCTAGCTTCGTTACTT</genome_strand>
        <mrna_strand>GCAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAGAAGCTCGTTGGACTGGCTTAAATGGAGTGGCAAGGGTGGGACTTGTTTTCCCATCCAAGTCAGGGGAAGATGTATATATGAGATCACCAGAGTTTTTTTATCAAAATACTTATTGGTATTTGTTGTTGATTGATTTTACCAACAGAGTTTTCAGGTAGGTAGGCAACAAGTTTTTGTAATGATATGGACATTTCAATTTTAAGACCATGTGCATAACCAGCAATTTTTAAACTGGAGGGACCTGCAAAGAATTGATCAGATCAGAGAGTATATGATCCATCATGTTATTTACCAAATTTAGATAAGAGGACTGGTATTTTTAAATATCCATTAATAGCTAGGTTCGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393161" ref_strand="+" ref_description="SGN-E393161 [TUS-38-N5]">
      <seq>gcagagaaggcacgcaagctatgggaggtcagtgagaagctcgttggactggcttaaatggagtggcaagggtgcgacttgttttcccatccaagtcaggagaagatgtatatatgagatcaccagagttcttttatcaaaatacttattggtatttgttgttgattgattttaccaacagagttttcaggtaggtaggcaacaagttcttgtaatgatatggacatctcaattctaagaccatgtgcataaccagcaactcttaaactggagggacctgcaaagaattgatcagatcagagagtatatgatccatcatgttatttaccaaatttagataagacgactggtatttctaaatatccattaatagctagcttcgttacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="36575" stop="35588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36275" g_stop="35888" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="389" polyA_stop="424"/>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E393161" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36275" e_stop="35888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAGAAGCTCGTTGGACTGGCTTAAATGGAGTGGCAAGGGTGCGACTTGTTTTCCCATCCAAGTCAGGAGAAGATGTATATATGAGATCACCAGAGTTCTTTTATCAAAATACTTATTGGTATTTGTTGTTGATTGATTTTACCAACAGAGTTTTCAGGTAGGTAGGCAACAAGTTCTTGTAATGATATGGACATCTCAATTCTAAGACCATGTGCATAACCAGCAACTCTTAAACTGGAGGGACCTGCAAAGAATTGATCAGATCAGAGAGTATATGATCCATCATGTTATTTACCAAATTTAGATAAGACGACTGGTATTTCTAAATATCCATTAATAGCTAGCTTCGTTACTT</genome_strand>
        <mrna_strand>GCAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAGAAGCTCGTTGGACTGGCTTAAATGGAGTGGCAAGGGTGCGACTTGTTTTCCCATCCAAGTCAGGAGAAGATGTATATATGAGATCACCAGAGTTCTTTTATCAAAATACTTATTGGTATTTGTTGTTGATTGATTTTACCAACAGAGTTTTCAGGTAGGTAGGCAACAAGTTCTTGTAATGATATGGACATCTCAATTCTAAGACCATGTGCATAACCAGCAACTCTTAAACTGGAGGGACCTGCAAAGAATTGATCAGATCAGAGAGTATATGATCCATCATGTTATTTACCAAATTTAGATAAGACGACTGGTATTTCTAAATATCCATTAATAGCTAGCTTCGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294179" ref_strand="+" ref_description="SGN-E294179 [cLET-13-J2]">
      <seq>cagagaaggcacgcaagctatgggaggtcagtgagaagctcgttggactggcttaaatggagtggcaagggtgcgacttgttttcccatccaagtcaggagaagatgtatatatgagatcaccagagttcttttatcaaaatacttattggtatttgttgttgattgattttaccaacagagttttcaggtaggtaggcaacaagttcttgtaatgatatggacatctcaattctaagaccatgtgcataaccagcaactcttaaactggagggacctgcaaagaattgatcagatcagagagtatatgatccatcatgttatttaccaaatttagataagacgactggtatttctaaatatccattaatagctagcttcgtttcttacaaaaaaatattttattgactctgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="36574" stop="35588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36274" g_stop="35888" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E294179" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36274" e_stop="35888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAGAAGCTCGTTGGACTGGCTTAAATGGAGTGGCAAGGGTGCGACTTGTTTTCCCATCCAAGTCAGGAGAAGATGTATATATGAGATCACCAGAGTTCTTTTATCAAAATACTTATTGGTATTTGTTGTTGATTGATTTTACCAACAGAGTTTTCAGGTAGGTAGGCAACAAGTTCTTGTAATGATATGGACATCTCAATTCTAAGACCATGTGCATAACCAGCAACTCTTAAACTGGAGGGACCTGCAAAGAATTGATCAGATCAGAGAGTATATGATCCATCATGTTATTTACCAAATTTAGATAAGACGACTGGTATTTCTAAATATCCATTAATAGCTAGCTTCGTTACTT</genome_strand>
        <mrna_strand>CAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAGAAGCTCGTTGGACTGGCTTAAATGGAGTGGCAAGGGTGCGACTTGTTTTCCCATCCAAGTCAGGAGAAGATGTATATATGAGATCACCAGAGTTCTTTTATCAAAATACTTATTGGTATTTGTTGTTGATTGATTTTACCAACAGAGTTTTCAGGTAGGTAGGCAACAAGTTCTTGTAATGATATGGACATCTCAATTCTAAGACCATGTGCATAACCAGCAACTCTTAAACTGGAGGGACCTGCAAAGAATTGATCAGATCAGAGAGTATATGATCCATCATGTTATTTACCAAATTTAGATAAGACGACTGGTATTTCTAAATATCCATTAATAGCTAGCTTCGTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370299" ref_strand="+" ref_description="SGN-E370299 [TUS-28-G9](-)">
      <seq>atgcttaccatgcaagagtaccataggcgtttccacgaggagactggcattgcctttgcttccctctatcccggctgcattgctgaaactggtttatttaggaatcacattcccttgttcaggactctcttcccaccatttcaaaagtacataaccaaaggctatgtatctgaagaagaagcaggaaaaagacttgcacaggtagtacgtgatccaagtctttcaaaatccggtgtctactggagttggaacagtacctcctcctcttttgagaaccagctgtcgaaggaagccagtgatgcagagaaggcacgcaagctatgggaggtcagtgagaagctcgttggactggcttaaatggagtggcaagggtgcgacttgttttcccatccaagtcaggagaagatgtatatatgagatcaccagagttcttttatcaaaatacttattggtatttgttgttgattgattttaccaacagagttttcaggtaggtaggcaacaagttcttgtaatgatatggacatctcaattctaagaccatgtgcataaccagcaactcttaaactggagggacctgcaaagaattgatcagatcagagagtatatgatccatcatgttatttaccaaatttagataagacgactggtatttctaaataaacattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="36986" stop="35604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36686" g_stop="36486" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36485" i_stop="36375" i_length="111">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36374" g_stop="35917" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="659" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="681"/>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E370299" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36686" e_stop="36486"/>
          <exon e_start="36374" e_stop="35917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTTACCATGCAAGAGTACCATAGGCGTTTCCACGAGGAGACTGGCATTGCCTTTGCTTCCCTCTATCCCGGCTGCATTGCTGAAACTGGTTTATTTAGGAATCACATTCCCTTGTTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACCAAAGGCTATGTATCTGAAGAAGAAGCAGGAAAAAGACTTGCACAGGTTAGTCAAAATTAGCAAACTTGGACACCTTTATCCCTAGCATTTTCACAGATTGAATCCATTAGCTAGCACATGAGAAGTACCACTGAATCATCTGAGCTAAATCCACAGGTAGTACGTGATCCAAGTCTTTCAAAATCCGGTGTCTACTGGAGTTGGAACAGTACCTCCTCCTCTTTTGAGAACCAGCTGTCGAAGGAAGCCAGTGATGCAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAGAAGCTCGTTGGACTGGCTTAAATGGAGTGGCAAGGGTGCGACTTGTTTTCCCATCCAAGTCAGGAGAAGATGTATATATGAGATCACCAGAGTTCTTTTATCAAAATACTTATTGGTATTTGTTGTTGATTGATTTTACCAACAGAGTTTTCAGGTAGGTAGGCAACAAGTTCTTGTAATGATATGGACATCTCAATTCTAAGACCATGTGCATAACCAGCAACTCTTAAACTGGAGGGACCTGCAAAGAATTGATCAGATCAGAGAGTATATGATCCATCATGTTATTTACCAAATTTAGATAAGACGACTGGTATTTCTAA</genome_strand>
        <mrna_strand>ATGCTTACCATGCAAGAGTACCATAGGCGTTTCCACGAGGAGACTGGCATTGCCTTTGCTTCCCTCTATCCCGGCTGCATTGCTGAAACTGGTTTATTTAGGAATCACATTCCCTTGTTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACCAAAGGCTATGTATCTGAAGAAGAAGCAGGAAAAAGACTTGCACAG...............................................................................................................GTAGTACGTGATCCAAGTCTTTCAAAATCCGGTGTCTACTGGAGTTGGAACAGTACCTCCTCCTCTTTTGAGAACCAGCTGTCGAAGGAAGCCAGTGATGCAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAGAAGCTCGTTGGACTGGCTTAAATGGAGTGGCAAGGGTGCGACTTGTTTTCCCATCCAAGTCAGGAGAAGATGTATATATGAGATCACCAGAGTTCTTTTATCAAAATACTTATTGGTATTTGTTGTTGATTGATTTTACCAACAGAGTTTTCAGGTAGGTAGGCAACAAGTTCTTGTAATGATATGGACATCTCAATTCTAAGACCATGTGCATAACCAGCAACTCTTAAACTGGAGGGACCTGCAAAGAATTGATCAGATCAGAGAGTATATGATCCATCATGTTATTTACCAAATTTAGATAAGACGACTGGTATTTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347408" ref_strand="+" ref_description="SGN-E347408 [cTOF-33-C21]">
      <seq>tgcattgctgaaactggtttatttaggaatcacattcccttgttcaggactctcttcccaccatttcaaaagtacataaccaaaggctatgtatctgaagaaagaagcaggaaaaagacttgcacaggtagtacgtgatccaagtctttcaaaatccggtgtctactggagttggaacagtacctcctcctcttttgagaaccagctgtcgaaggaagccagtgatgcagagaaggcacgcaagctatgggaggtcagtgagaagctcgttggactggcttaaatggagtggcaagggtgcgacttgttttcccatccaagtcaggagaagatgtatatatgagatcaccagagttcttttatcaaaatacttattggtatttgttgttgattgattttaccaacagagttttcaggtaggtaggcaacaagttcttgtaatgatatggacatctcaattctaagaccatgtgcataaccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="36911" stop="35717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36611" g_stop="36486" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36485" i_stop="36375" i_length="111">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36374" g_stop="36021" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="481" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="482" polyA_stop="494"/>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E347408" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36611" e_stop="36486"/>
          <exon e_start="36374" e_stop="36021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTGCTGAAACTGGTTTATTTAGGAATCACATTCCCTTGTTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACCAAAGGCTATGTATCTGAAG-AAGAAGCAGGAAAAAGACTTGCACAGGTTAGTCAAAATTAGCAAACTTGGACACCTTTATCCCTAGCATTTTCACAGATTGAATCCATTAGCTAGCACATGAGAAGTACCACTGAATCATCTGAGCTAAATCCACAGGTAGTACGTGATCCAAGTCTTTCAAAATCCGGTGTCTACTGGAGTTGGAACAGTACCTCCTCCTCTTTTGAGAACCAGCTGTCGAAGGAAGCCAGTGATGCAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAGAAGCTCGTTGGACTGGCTTAAATGGAGTGGCAAGGGTGCGACTTGTTTTCCCATCCAAGTCAGGAGAAGATGTATATATGAGATCACCAGAGTTCTTTTATCAAAATACTTATTGGTATTTGTTGTTGATTGATTTTACCAACAGAGTTTTCAGGTAGGTAGGCAACAAGTTCTTGTAATGATATGGACATCTCAATTCTAAGACCATGTGCATAACCA</genome_strand>
        <mrna_strand>TGCATTGCTGAAACTGGTTTATTTAGGAATCACATTCCCTTGTTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACCAAAGGCTATGTATCTGAAGAAAGAAGCAGGAAAAAGACTTGCACAG...............................................................................................................GTAGTACGTGATCCAAGTCTTTCAAAATCCGGTGTCTACTGGAGTTGGAACAGTACCTCCTCCTCTTTTGAGAACCAGCTGTCGAAGGAAGCCAGTGATGCAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAGAAGCTCGTTGGACTGGCTTAAATGGAGTGGCAAGGGTGCGACTTGTTTTCCCATCCAAGTCAGGAGAAGATGTATATATGAGATCACCAGAGTTCTTTTATCAAAATACTTATTGGTATTTGTTGTTGATTGATTTTACCAACAGAGTTTTCAGGTAGGTAGGCAACAAGTTCTTGTAATGATATGGACATCTCAATTCTAAGACCATGTGCATAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340624" ref_strand="+" ref_description="SGN-E340624 [cTOF-1-G22]">
      <seq>tgcattgctgaaactggtttatttaggaatcacattcccttgttcaggactctcttcccaccatttcaaaagtacataaccaaaggctatgtatctgaagaagaagcaggaaaaagacttgcacaggtagtacgtgatccaagtctttcaaaatccggtgtctactggagttggaacagtacctcctcctcttttgagaaccagctgtcgaaggaagccagtgatgcagagaaggcacgcaagctatgggaggtcagtgagaagctcgttggactggcttaaatggagtggcaagggtgcgacttgttttcccatccaagtcaggagaagatgtatatatgagatcaccagagttcttttatcaaaatacttattggtatttgttgttgattgattttaccaacagagttttcaggtaggtaggcaacaagttcttgtaatgatatggacatctcaattctaagaccatgtgcataaccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="36911" stop="35717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36611" g_stop="36486" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36485" i_stop="36375" i_length="111">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36374" g_stop="36021" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="480" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="481" polyA_stop="493"/>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E340624" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36611" e_stop="36486"/>
          <exon e_start="36374" e_stop="36021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTGCTGAAACTGGTTTATTTAGGAATCACATTCCCTTGTTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACCAAAGGCTATGTATCTGAAGAAGAAGCAGGAAAAAGACTTGCACAGGTTAGTCAAAATTAGCAAACTTGGACACCTTTATCCCTAGCATTTTCACAGATTGAATCCATTAGCTAGCACATGAGAAGTACCACTGAATCATCTGAGCTAAATCCACAGGTAGTACGTGATCCAAGTCTTTCAAAATCCGGTGTCTACTGGAGTTGGAACAGTACCTCCTCCTCTTTTGAGAACCAGCTGTCGAAGGAAGCCAGTGATGCAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAGAAGCTCGTTGGACTGGCTTAAATGGAGTGGCAAGGGTGCGACTTGTTTTCCCATCCAAGTCAGGAGAAGATGTATATATGAGATCACCAGAGTTCTTTTATCAAAATACTTATTGGTATTTGTTGTTGATTGATTTTACCAACAGAGTTTTCAGGTAGGTAGGCAACAAGTTCTTGTAATGATATGGACATCTCAATTCTAAGACCATGTGCATAACCA</genome_strand>
        <mrna_strand>TGCATTGCTGAAACTGGTTTATTTAGGAATCACATTCCCTTGTTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACCAAAGGCTATGTATCTGAAGAAGAAGCAGGAAAAAGACTTGCACAG...............................................................................................................GTAGTACGTGATCCAAGTCTTTCAAAATCCGGTGTCTACTGGAGTTGGAACAGTACCTCCTCCTCTTTTGAGAACCAGCTGTCGAAGGAAGCCAGTGATGCAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAGAAGCTCGTTGGACTGGCTTAAATGGAGTGGCAAGGGTGCGACTTGTTTTCCCATCCAAGTCAGGAGAAGATGTATATATGAGATCACCAGAGTTCTTTTATCAAAATACTTATTGGTATTTGTTGTTGATTGATTTTACCAACAGAGTTTTCAGGTAGGTAGGCAACAAGTTCTTGTAATGATATGGACATCTCAATTCTAAGACCATGTGCATAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747192" ref_strand="+" ref_description="SGN-E747192 [GI|9049770]">
      <seq>agggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggtaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagtgtgggcaccaaccatctcggacatttccttctttcaaggttgctgctagatgacctcaagcaatcagattatccacaaaagcgccttataattgttggctccataacaggaaacacaaatactttggctggaaatgtgccaccaaaggctaatcttggagatctacgaggactttcaggagggttgaatagtttaaactgctcacccatgattgatggaggagaatttgatggtgccaaagcctataaagacagcaaagtctgtaacatgcttaccatgcaagagtaccataggcgtttccacgaggagactggcattgcctttgcttccctctatcccggctgcattgctgaaactggtttatttaggaatcacattcccttgttcaggactctcttcccaccatttcaaaagtacataaccaaaggctatgtatctgaagaagaagcaggaaaaagacttgcacaggtagtacgtgatccaagtctttcaaaatccggtgtctactggagttggaacagtacctcctcctcttttgagaaccagctgtcgaaggaagccagtgatgcagagaaggcacgcaagctatgggaggtcagtgagaagctcgttggactggcttaaatggagtggcaagggtgcgacttgttttcccatccaagtcaggagaagatgtatatatgagatcaccagagttcttttatcaaaatacttattggtatttgttggtgattgatttaccaacagagttttcaggtaggtaggcaacaagttcttggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="38028" stop="35761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37728" g_stop="37398" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37397" i_stop="36845" i_length="553">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36844" g_stop="36486" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="690" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36485" i_stop="36375" i_length="111">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36374" g_stop="36065" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="999" r_length="309" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E747192" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1000</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37728" e_stop="37398"/>
          <exon e_start="36844" e_stop="36486"/>
          <exon e_start="36374" e_stop="36065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAGGTACTGATCTGAAACTTAAAAGGTTATGCTCTCATGTCCAGCATACTCGTTTTCTTTGAGCAACTTAATTTCACGTCACCTAATGTAAGATAGGAACAAATTATCAAAAGCTGTAAAAGTTAGAATTCTACAAAGTAGCATGTAGATGTTCTTACTTATAAGTAATTTAGCACTAACATATGTAGATATACACAAGACAGAGAATGGAGAAACTACACGTCATGATGTGTCAAATAAAACGGTGGACAGCATATATGGGGGAAAAACAGTGTTTTGTTCTTTGAGCTTCTGAAGTACATACTTTAGTAGCACTTAACGCTATTTGACTTTAGTACGAGTATTATCTTCCCCCAAAAAATAAAATGCTGGACATCCTGTACAACTTCTTGTGAAATAGTAGATCTTAGCGCTATTTTAGACTTTAGTACGAATATTACCTTCCCCCAAAAAATAAAATGCTGGACATCATGTACAACTTCTCCTTGTGAATTATCATTTTATTAAAGGAAATCTGAGATGATTGAAATCTAATACTATAATTTTTCTGCTACAGGAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAGAGTACCATAGGCGTTTCCACGAGGAGACTGGCATTGCCTTTGCTTCCCTCTATCCCGGCTGCATTGCTGAAACTGGTTTATTTAGGAATCACATTCCCTTGTTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACCAAAGGCTATGTATCTGAAGAAGAAGCAGGAAAAAGACTTGCACAGGTTAGTCAAAATTAGCAAACTTGGACACCTTTATCCCTAGCATTTTCACAGATTGAATCCATTAGCTAGCACATGAGAAGTACCACTGAATCATCTGAGCTAAATCCACAGGTAGTACGTGATCCAAGTCTTTCAAAATCCGGTGTCTACTGGAGTTGGAACAGTACCTCCTCCTCTTTTGAGAACCAGCTGTCGAAGGAAGCCAGTGATGCAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAGAAGCTCGTTGGACTGGCTTAAATGGAGTGGCAAGGGTGCGACTTGTTTTCCCATCCAAGTCAGGAGAAGATGTATATATGAGATCACCAGAGTTCTTTTATCAAAATACTTATTGGTATTTGTTGTTGATTGATTTTACCAACAGAGTTTTCAGGTAGGTAGGCAACAAGTTCTT</genome_strand>
        <mrna_strand>AGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGTAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAGAGTACCATAGGCGTTTCCACGAGGAGACTGGCATTGCCTTTGCTTCCCTCTATCCCGGCTGCATTGCTGAAACTGGTTTATTTAGGAATCACATTCCCTTGTTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACCAAAGGCTATGTATCTGAAGAAGAAGCAGGAAAAAGACTTGCACAG...............................................................................................................GTAGTACGTGATCCAAGTCTTTCAAAATCCGGTGTCTACTGGAGTTGGAACAGTACCTCCTCCTCTTTTGAGAACCAGCTGTCGAAGGAAGCCAGTGATGCAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAGAAGCTCGTTGGACTGGCTTAAATGGAGTGGCAAGGGTGCGACTTGTTTTCCCATCCAAGTCAGGAGAAGATGTATATATGAGATCACCAGAGTTCTTTTATCAAAATACTTATTGGTATTTGTTGGTGATTGA-TTTACCAACAGAGTTTTCAGGTAGGTAGGCAACAAGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267930" ref_strand="-" ref_description="SGN-E267930 [cLEI-12-J4]">
      <seq>ctatcccggctgcattgctgaaactggtttatttaggaatcacattcccttgttcaggactctcttcccaccatttcaaaagtacataaccaaaggctatgtatctgaagaagaagcaggaaaaagacttgcacaggtagtacgtgatccaagtctttcaaaatccggtgtctactggagttggaacagtacctcctcctcttttgagaaccagctgtcgaaggaagccagtgatgcagagaaggcacgcaagctatgggaggtcagtgagaagctcgttggactggcttaaatggagtggcaagggtgcgacttgttttcccatccaagtcaggagaagatgtatatatgagatcaccagagttcttttatcaaaatacttattggtatttgttgttgattgattttaccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="36921" stop="35794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36621" g_stop="36486" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36485" i_stop="36375" i_length="111">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36374" g_stop="36094" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="417" r_length="281" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="418" polyA_stop="432"/>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E267930" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267930" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36621" e_stop="36486"/>
          <exon e_start="36374" e_stop="36094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCCCGGCTGCATTGCTGAAACTGGTTTATTTAGGAATCACATTCCCTTGTTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACCAAAGGCTATGTATCTGAAGAAGAAGCAGGAAAAAGACTTGCACAGGTTAGTCAAAATTAGCAAACTTGGACACCTTTATCCCTAGCATTTTCACAGATTGAATCCATTAGCTAGCACATGAGAAGTACCACTGAATCATCTGAGCTAAATCCACAGGTAGTACGTGATCCAAGTCTTTCAAAATCCGGTGTCTACTGGAGTTGGAACAGTACCTCCTCCTCTTTTGAGAACCAGCTGTCGAAGGAAGCCAGTGATGCAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAGAAGCTCGTTGGACTGGCTTAAATGGAGTGGCAAGGGTGCGACTTGTTTTCCCATCCAAGTCAGGAGAAGATGTATATATGAGATCACCAGAGTTCTTTTATCAAAATACTTATTGGTATTTGTTGTTGATTGATTTTACCAACAGA</genome_strand>
        <mrna_strand>CTATCCCGGCTGCATTGCTGAAACTGGTTTATTTAGGAATCACATTCCCTTGTTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACCAAAGGCTATGTATCTGAAGAAGAAGCAGGAAAAAGACTTGCACAG...............................................................................................................GTAGTACGTGATCCAAGTCTTTCAAAATCCGGTGTCTACTGGAGTTGGAACAGTACCTCCTCCTCTTTTGAGAACCAGCTGTCGAAGGAAGCCAGTGATGCAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAGAAGCTCGTTGGACTGGCTTAAATGGAGTGGCAAGGGTGCGACTTGTTTTCCCATCCAAGTCAGGAGAAGATGTATATATGAGATCACCAGAGTTCTTTTATCAAAATACTTATTGGTATTTGTTGTTGATTGATTTTACCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257350" ref_strand="+" ref_description="SGN-E257350 [cLEG-45-G11]">
      <seq>accaaccatctcggacatttccttctttcaaggttgctgctagatgacctcaagcaatcagattatccacaaaagcgccttataattgttggctccataacaggaaacacaaatactttggctggaaatgtgccaccaaaggctaatcttggagatctacgaggactttcaggagggttgaatagtttaaactgctcacccatgattgatggaggagaatttgatggtgccaaagcctataaagacagcaaagtctgtaacatgcttaccatgcaagagtaccataggcgtttccacgaggagactggcattgcctttgcttccctctatcccggctgcattgctgaaactggtttatttaggaatcacattcccttgttcaggactctcttcccaccatttcaaaagtacataaccaaaggctatgtatctgaagaagaagcaggaaaaagacttgcacaggtagtacgtgatccaagtctttcaaaatccggtgtctactggagttggaacagtacctcctcctcttttgagaaccagctgtcgaaggaagccagtgatgcagagaaggcacgcaagctatgggaggtcagtgagaagctcgttggactggcttaaatggagtggcaagggtgcgacttgttttcccattcaagtcaggagaagatgtatatatgagatcaccagagttcttttatcaaatacttattgggatttgttgttgattgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="37800" stop="35804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37500" g_stop="37398" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37397" i_stop="36845" i_length="553">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36844" g_stop="36486" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="462" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36485" i_stop="36375" i_length="111">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36374" g_stop="36104" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="732" r_length="270" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E257350" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37500" e_stop="37398"/>
          <exon e_start="36844" e_stop="36486"/>
          <exon e_start="36374" e_stop="36104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAGGTACTGATCTGAAACTTAAAAGGTTATGCTCTCATGTCCAGCATACTCGTTTTCTTTGAGCAACTTAATTTCACGTCACCTAATGTAAGATAGGAACAAATTATCAAAAGCTGTAAAAGTTAGAATTCTACAAAGTAGCATGTAGATGTTCTTACTTATAAGTAATTTAGCACTAACATATGTAGATATACACAAGACAGAGAATGGAGAAACTACACGTCATGATGTGTCAAATAAAACGGTGGACAGCATATATGGGGGAAAAACAGTGTTTTGTTCTTTGAGCTTCTGAAGTACATACTTTAGTAGCACTTAACGCTATTTGACTTTAGTACGAGTATTATCTTCCCCCAAAAAATAAAATGCTGGACATCCTGTACAACTTCTTGTGAAATAGTAGATCTTAGCGCTATTTTAGACTTTAGTACGAATATTACCTTCCCCCAAAAAATAAAATGCTGGACATCATGTACAACTTCTCCTTGTGAATTATCATTTTATTAAAGGAAATCTGAGATGATTGAAATCTAATACTATAATTTTTCTGCTACAGGAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAGAGTACCATAGGCGTTTCCACGAGGAGACTGGCATTGCCTTTGCTTCCCTCTATCCCGGCTGCATTGCTGAAACTGGTTTATTTAGGAATCACATTCCCTTGTTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACCAAAGGCTATGTATCTGAAGAAGAAGCAGGAAAAAGACTTGCACAGGTTAGTCAAAATTAGCAAACTTGGACACCTTTATCCCTAGCATTTTCACAGATTGAATCCATTAGCTAGCACATGAGAAGTACCACTGAATCATCTGAGCTAAATCCACAGGTAGTACGTGATCCAAGTCTTTCAAAATCCGGTGTCTACTGGAGTTGGAACAGTACCTCCTCCTCTTTTGAGAACCAGCTGTCGAAGGAAGCCAGTGATGCAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAGAAGCTCGTTGGACTGGCTTAAATGGAGTGGCAAGGGTGCGACTTGTTTTCCCATCCAAGTCAGGAGAAGATGTATATATGAGATCACCAGAGTTCTTTTATCAAAATACTTATTGGTATTTGTTGTTGATTGATTT</genome_strand>
        <mrna_strand>ACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAGAGTACCATAGGCGTTTCCACGAGGAGACTGGCATTGCCTTTGCTTCCCTCTATCCCGGCTGCATTGCTGAAACTGGTTTATTTAGGAATCACATTCCCTTGTTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACCAAAGGCTATGTATCTGAAGAAGAAGCAGGAAAAAGACTTGCACAG...............................................................................................................GTAGTACGTGATCCAAGTCTTTCAAAATCCGGTGTCTACTGGAGTTGGAACAGTACCTCCTCCTCTTTTGAGAACCAGCTGTCGAAGGAAGCCAGTGATGCAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAGAAGCTCGTTGGACTGGCTTAAATGGAGTGGCAAGGGTGCGACTTGTTTTCCCATTCAAGTCAGGAGAAGATGTATATATGAGATCACCAGAGTTCTTTTATC-AAATACTTATTGGGATTTGTTGTTGATTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268244" ref_strand="+" ref_description="SGN-E268244 [cLEM-3-G8]">
      <seq>acaaatactttggctggaaatgtgccaccaaaggctaatcttggagatctaccgaggacctttcaggagggttgaatagtttaaactgctcacccatgattgatggaggagaatttgatggtgccaaagcctataaagacagcaaagtctgtaacatgcttaccatgcaagagtaccataggcgtttccacgaggagactggcattgcctttgcttccctctatcccggctgcattgctgaaactggtttatttaggaatcacattcccttgttcaggactctcttcccaccatttcaaaagtacataaccaaaggctatgtatctgaagaagaagcaggaaaaagacttgcacaggtagtacgtgatccaagtctttcaaaatccggtgtctactggagttggaacagtacctcctcctcttttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="37139" stop="36003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36839" g_stop="36486" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36485" i_stop="36375" i_length="111">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36374" g_stop="36303" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="428" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E268244" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36839" e_stop="36486"/>
          <exon e_start="36374" e_stop="36303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTA-CGAGGA-CTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAGAGTACCATAGGCGTTTCCACGAGGAGACTGGCATTGCCTTTGCTTCCCTCTATCCCGGCTGCATTGCTGAAACTGGTTTATTTAGGAATCACATTCCCTTGTTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACCAAAGGCTATGTATCTGAAGAAGAAGCAGGAAAAAGACTTGCACAGGTTAGTCAAAATTAGCAAACTTGGACACCTTTATCCCTAGCATTTTCACAGATTGAATCCATTAGCTAGCACATGAGAAGTACCACTGAATCATCTGAGCTAAATCCACAGGTAGTACGTGATCCAAGTCTTTCAAAATCCGGTGTCTACTGGAGTTGGAACAGTACCTCCTCCTCTTTTGAG</genome_strand>
        <mrna_strand>ACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACCGAGGACCTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAGAGTACCATAGGCGTTTCCACGAGGAGACTGGCATTGCCTTTGCTTCCCTCTATCCCGGCTGCATTGCTGAAACTGGTTTATTTAGGAATCACATTCCCTTGTTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACCAAAGGCTATGTATCTGAAGAAGAAGCAGGAAAAAGACTTGCACAG...............................................................................................................GTAGTACGTGATCCAAGTCTTTCAAAATCCGGTGTCTACTGGAGTTGGAACAGTACCTCCTCCTCTTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257246" ref_strand="+" ref_description="SGN-E257246 [cLEG-46-E13]">
      <seq>accaaccatctcggacatttccttctttcaaggttgctgctagatgacctcaagcaatcagattatccacaaaagcgccttataattgttggctccataacaggaaacacaaatactttggctggaaatgtgccaccaaaggctaatcttggagatctacgaggactttcaggagggttgaatagtttaaactgctcacccatgattgatggaggagaatttgatggtgccaaagcctataaagacagcaaagtctgtaacatgcttaccatgcaagagtaccataggcgtttccacgaggagactggcattgcctttgcttccctctatcccggctgcattgctgaaactggtttatttaggaatcacattcccttgttcaggactctcttcccaccatttcaaaagtacataaccaaaggctatgtatctgaagaagaagcaggaaaaagacttgcacaggtagtacgtgatccaagtctttcaaaatccggtgtctactggagttggaacagtacctcctcctcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="37800" stop="36005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37500" g_stop="37398" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37397" i_stop="36845" i_length="553">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36844" g_stop="36486" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="462" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36485" i_stop="36375" i_length="111">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36374" g_stop="36305" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="532" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E257246" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37500" e_stop="37398"/>
          <exon e_start="36844" e_stop="36486"/>
          <exon e_start="36374" e_stop="36305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAGGTACTGATCTGAAACTTAAAAGGTTATGCTCTCATGTCCAGCATACTCGTTTTCTTTGAGCAACTTAATTTCACGTCACCTAATGTAAGATAGGAACAAATTATCAAAAGCTGTAAAAGTTAGAATTCTACAAAGTAGCATGTAGATGTTCTTACTTATAAGTAATTTAGCACTAACATATGTAGATATACACAAGACAGAGAATGGAGAAACTACACGTCATGATGTGTCAAATAAAACGGTGGACAGCATATATGGGGGAAAAACAGTGTTTTGTTCTTTGAGCTTCTGAAGTACATACTTTAGTAGCACTTAACGCTATTTGACTTTAGTACGAGTATTATCTTCCCCCAAAAAATAAAATGCTGGACATCCTGTACAACTTCTTGTGAAATAGTAGATCTTAGCGCTATTTTAGACTTTAGTACGAATATTACCTTCCCCCAAAAAATAAAATGCTGGACATCATGTACAACTTCTCCTTGTGAATTATCATTTTATTAAAGGAAATCTGAGATGATTGAAATCTAATACTATAATTTTTCTGCTACAGGAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAGAGTACCATAGGCGTTTCCACGAGGAGACTGGCATTGCCTTTGCTTCCCTCTATCCCGGCTGCATTGCTGAAACTGGTTTATTTAGGAATCACATTCCCTTGTTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACCAAAGGCTATGTATCTGAAGAAGAAGCAGGAAAAAGACTTGCACAGGTTAGTCAAAATTAGCAAACTTGGACACCTTTATCCCTAGCATTTTCACAGATTGAATCCATTAGCTAGCACATGAGAAGTACCACTGAATCATCTGAGCTAAATCCACAGGTAGTACGTGATCCAAGTCTTTCAAAATCCGGTGTCTACTGGAGTTGGAACAGTACCTCCTCCTCTTTTG</genome_strand>
        <mrna_strand>ACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAGAGTACCATAGGCGTTTCCACGAGGAGACTGGCATTGCCTTTGCTTCCCTCTATCCCGGCTGCATTGCTGAAACTGGTTTATTTAGGAATCACATTCCCTTGTTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACCAAAGGCTATGTATCTGAAGAAGAAGCAGGAAAAAGACTTGCACAG...............................................................................................................GTAGTACGTGATCCAAGTCTTTCAAAATCCGGTGTCTACTGGAGTTGGAACAGTACCTCCTCCTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726636" ref_strand="+" ref_description="SGN-E726636 [LA12BF04]">
      <seq>aaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagtgtgggcaccaaccatctcggacatttccttctttcaaggttgctgctagatgacctcaagcaatcagattatccacaaaagcgccttataattgttggctccataacaggaaacacaaatactttggctggaaatgtgccaccaaaggctaatcttggagatctacgaggactttcaggagggttgaatagtttaaactgctcacccatgattgatggaggagaatttgatggtgccaaagcctataaagacagcaaagtctgtaacatgcttaccatgcaagagtaccataggcgtttccacgaggagactggcattgcctttgcttccctctatcccggctgcattgctgaaactggtttatttaggaatcacattcccttgttcaggactctcttcccaccatttcaaaagtacataaccaaaggctatgtatctgaagaagaagcaggaaaaagacttgcacaggtagtacgtgatccaagtctttcaaaatccggtgtctactggaattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="38139" stop="36026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37839" g_stop="37398" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37397" i_stop="36845" i_length="553">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36844" g_stop="36486" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="801" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36485" i_stop="36375" i_length="111">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36374" g_stop="36326" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="802" r_stop="850" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E726636" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37839" e_stop="37398"/>
          <exon e_start="36844" e_stop="36486"/>
          <exon e_start="36374" e_stop="36326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAGGTACTGATCTGAAACTTAAAAGGTTATGCTCTCATGTCCAGCATACTCGTTTTCTTTGAGCAACTTAATTTCACGTCACCTAATGTAAGATAGGAACAAATTATCAAAAGCTGTAAAAGTTAGAATTCTACAAAGTAGCATGTAGATGTTCTTACTTATAAGTAATTTAGCACTAACATATGTAGATATACACAAGACAGAGAATGGAGAAACTACACGTCATGATGTGTCAAATAAAACGGTGGACAGCATATATGGGGGAAAAACAGTGTTTTGTTCTTTGAGCTTCTGAAGTACATACTTTAGTAGCACTTAACGCTATTTGACTTTAGTACGAGTATTATCTTCCCCCAAAAAATAAAATGCTGGACATCCTGTACAACTTCTTGTGAAATAGTAGATCTTAGCGCTATTTTAGACTTTAGTACGAATATTACCTTCCCCCAAAAAATAAAATGCTGGACATCATGTACAACTTCTCCTTGTGAATTATCATTTTATTAAAGGAAATCTGAGATGATTGAAATCTAATACTATAATTTTTCTGCTACAGGAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAGAGTACCATAGGCGTTTCCACGAGGAGACTGGCATTGCCTTTGCTTCCCTCTATCCCGGCTGCATTGCTGAAACTGGTTTATTTAGGAATCACATTCCCTTGTTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACCAAAGGCTATGTATCTGAAGAAGAAGCAGGAAAAAGACTTGCACAGGTTAGTCAAAATTAGCAAACTTGGACACCTTTATCCCTAGCATTTTCACAGATTGAATCCATTAGCTAGCACATGAGAAGTACCACTGAATCATCTGAGCTAAATCCACAGGTAGTACGTGATCCAAGTCTTTCAAAATCCGGTGTCTACTGGAGTTGGA</genome_strand>
        <mrna_strand>AAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAGAGTACCATAGGCGTTTCCACGAGGAGACTGGCATTGCCTTTGCTTCCCTCTATCCCGGCTGCATTGCTGAAACTGGTTTATTTAGGAATCACATTCCCTTGTTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACCAAAGGCTATGTATCTGAAGAAGAAGCAGGAAAAAGACTTGCACAG...............................................................................................................GTAGTACGTGATCCAAGTCTTTCAAAATCCGGTGTCTACTGGAATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262287" ref_strand="+" ref_description="SGN-E262287 [cLEG-56-B23]">
      <seq>ctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagtgtgggcaccaaccatctcggacatttccttctttcaaggttgctgctagatgacctcaagcaatcagattatccacaaaagcgccttataattgttggctccataacaggaaacacaaatactttnggctggaaatgtgccaccaaaggctaatcttggagatctacgaggactttcaggagggttgaatagtttaaactgctcacccatgattgatgggagagaatttgatggtgccaaagcctataaagacagcaaagtctgtaacatgcttaccatgcaagagtaccataggcgtttccacgaggagactggcattgcctttgcttccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39059" stop="36321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38759" g_stop="38682" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37929" g_stop="37398" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="610" r_length="532" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37397" i_stop="36845" i_length="553">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36844" g_stop="36621" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="835" r_length="225" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E262287" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38759" e_stop="38682"/>
          <exon e_start="37929" e_stop="37398"/>
          <exon e_start="36844" e_stop="36621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAGGTACTGATCTGAAACTTAAAAGGTTATGCTCTCATGTCCAGCATACTCGTTTTCTTTGAGCAACTTAATTTCACGTCACCTAATGTAAGATAGGAACAAATTATCAAAAGCTGTAAAAGTTAGAATTCTACAAAGTAGCATGTAGATGTTCTTACTTATAAGTAATTTAGCACTAACATATGTAGATATACACAAGACAGAGAATGGAGAAACTACACGTCATGATGTGTCAAATAAAACGGTGGACAGCATATATGGGGGAAAAACAGTGTTTTGTTCTTTGAGCTTCTGAAGTACATACTTTAGTAGCACTTAACGCTATTTGACTTTAGTACGAGTATTATCTTCCCCCAAAAAATAAAATGCTGGACATCCTGTACAACTTCTTGTGAAATAGTAGATCTTAGCGCTATTTTAGACTTTAGTACGAATATTACCTTCCCCCAAAAAATAAAATGCTGGACATCATGTACAACTTCTCCTTGTGAATTATCATTTTATTAAAGGAAATCTGAGATGATTGAAATCTAATACTATAATTTTTCTGCTACAGGAAACACAAATACTTT-GGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAGAGTACCATAGGCGTTTCCACGAGGAGACTGGCATTGCCTTTGCTTCCCTC</genome_strand>
        <mrna_strand>CTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACACAAATACTTTNGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGGAGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAGAGTACCATAGGCGTTTCCACGAGGAGACTGGCATTGCCTTTGCTTCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729235" ref_strand="+" ref_description="SGN-E729235 [LA20BF10]">
      <seq>caatcacccagnctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagtgtgggcaccaaccatctcggacatttccttctttcaaggttgctgctagatgacctcaagcaatcagattatccacaaaagcgccttataattgttggctccataacaggaaacacaaatactttggctggaaatgtgccaccaaaggctaatcttggagatctacgaggactttcaggagggttgaatagtttaaactgctcacccatgattgatggaggagaatttgatggtgccaaagcctataaagacagcaaagtctgtaacatgcttaccatgcaagagtaccataggcgtttccacgaggagactggcattgcctttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="38168" stop="36327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37868" g_stop="37398" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37397" i_stop="36845" i_length="553">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36844" g_stop="36627" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="689" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E729235" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37868" e_stop="37398"/>
          <exon e_start="36844" e_stop="36627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAGGTACTGATCTGAAACTTAAAAGGTTATGCTCTCATGTCCAGCATACTCGTTTTCTTTGAGCAACTTAATTTCACGTCACCTAATGTAAGATAGGAACAAATTATCAAAAGCTGTAAAAGTTAGAATTCTACAAAGTAGCATGTAGATGTTCTTACTTATAAGTAATTTAGCACTAACATATGTAGATATACACAAGACAGAGAATGGAGAAACTACACGTCATGATGTGTCAAATAAAACGGTGGACAGCATATATGGGGGAAAAACAGTGTTTTGTTCTTTGAGCTTCTGAAGTACATACTTTAGTAGCACTTAACGCTATTTGACTTTAGTACGAGTATTATCTTCCCCCAAAAAATAAAATGCTGGACATCCTGTACAACTTCTTGTGAAATAGTAGATCTTAGCGCTATTTTAGACTTTAGTACGAATATTACCTTCCCCCAAAAAATAAAATGCTGGACATCATGTACAACTTCTCCTTGTGAATTATCATTTTATTAAAGGAAATCTGAGATGATTGAAATCTAATACTATAATTTTTCTGCTACAGGAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAGAGTACCATAGGCGTTTCCACGAGGAGACTGGCATTGCCTTTGCT</genome_strand>
        <mrna_strand>CAATCACCCAGNCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAGAGTACCATAGGCGTTTCCACGAGGAGACTGGCATTGCCTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730989" ref_strand="+" ref_description="SGN-E730989 [LA25DC08]">
      <seq>ccgattggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagtgtgggcaccaaccatctcggacatttccttctttcaaggttgctgctacatgacctcaagcaatcagattatccacaaaagcgccttataattgttggctccataacaggaaacacaaatactttggctggaaatgtgccaccaaaggctaatcttggagatctacgaggactttcangagggttgaatagtttaaactgctcacccatgattgatggaggagaatttgatggtgccaaagcctataaagacagcaaagtctgtaacatgcttaccatgcaagagtaccatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39217" stop="36361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38920" g_stop="38863" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="157" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37398" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="689" r_length="532" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37397" i_stop="36845" i_length="553">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36844" g_stop="36661" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="873" r_length="184" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E730989" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38920" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37398"/>
          <exon e_start="36844" e_stop="36661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAGGTACTGATCTGAAACTTAAAAGGTTATGCTCTCATGTCCAGCATACTCGTTTTCTTTGAGCAACTTAATTTCACGTCACCTAATGTAAGATAGGAACAAATTATCAAAAGCTGTAAAAGTTAGAATTCTACAAAGTAGCATGTAGATGTTCTTACTTATAAGTAATTTAGCACTAACATATGTAGATATACACAAGACAGAGAATGGAGAAACTACACGTCATGATGTGTCAAATAAAACGGTGGACAGCATATATGGGGGAAAAACAGTGTTTTGTTCTTTGAGCTTCTGAAGTACATACTTTAGTAGCACTTAACGCTATTTGACTTTAGTACGAGTATTATCTTCCCCCAAAAAATAAAATGCTGGACATCCTGTACAACTTCTTGTGAAATAGTAGATCTTAGCGCTATTTTAGACTTTAGTACGAATATTACCTTCCCCCAAAAAATAAAATGCTGGACATCATGTACAACTTCTCCTTGTGAATTATCATTTTATTAAAGGAAATCTGAGATGATTGAAATCTAATACTATAATTTTTCTGCTACAGGAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAGAGTACCATAG</genome_strand>
        <mrna_strand>CCGATTGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTACATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCANGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAGAGTACCATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254770" ref_strand="+" ref_description="SGN-E254770 [cLEG-33-M5]">
      <seq>gctacagcaaaagctataggcgagtcaagagactggcacgttataatggcctgtaaggacttcctcaaagctgaaaaagcagcaaaatcacttggcattccgaaagaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcaaggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagtgtgggcaccaaccatctcggacatttccttctttcaagagttgctgctagatgacctcaagcaatcagattatccacaaaagcgccttataattgttggctccataacaggaaacacaaatactttggctggaaatgtgccaccaaaggctaatcttggagatctacgaggactttcaagagggttgaatagtttaaactgctcacccatgattgatggaggagaatttgatggtgccaaagcctataaagacagcaaagtctgtaacatgcttaccatgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="38082" stop="36371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37782" g_stop="37398" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37397" i_stop="36845" i_length="553">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36844" g_stop="36671" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="560" r_length="174" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E254770" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37782" e_stop="37398"/>
          <exon e_start="36844" e_stop="36671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAG-GTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAGGTACTGATCTGAAACTTAAAAGGTTATGCTCTCATGTCCAGCATACTCGTTTTCTTTGAGCAACTTAATTTCACGTCACCTAATGTAAGATAGGAACAAATTATCAAAAGCTGTAAAAGTTAGAATTCTACAAAGTAGCATGTAGATGTTCTTACTTATAAGTAATTTAGCACTAACATATGTAGATATACACAAGACAGAGAATGGAGAAACTACACGTCATGATGTGTCAAATAAAACGGTGGACAGCATATATGGGGGAAAAACAGTGTTTTGTTCTTTGAGCTTCTGAAGTACATACTTTAGTAGCACTTAACGCTATTTGACTTTAGTACGAGTATTATCTTCCCCCAAAAAATAAAATGCTGGACATCCTGTACAACTTCTTGTGAAATAGTAGATCTTAGCGCTATTTTAGACTTTAGTACGAATATTACCTTCCCCCAAAAAATAAAATGCTGGACATCATGTACAACTTCTCCTTGTGAATTATCATTTTATTAAAGGAAATCTGAGATGATTGAAATCTAATACTATAATTTTTCTGCTACAGGAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAG</genome_strand>
        <mrna_strand>GCTACAGCAAAAGCTATAGGCGAGTCAAGAGACTGGCACGTTATAATGGCCTGTAAGGACTTCCTCAAAGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAAGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAAGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGAGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAAGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291116" ref_strand="+" ref_description="SGN-E291116 [cLET-8-B15]">
      <seq>gaaaattacactgtcatgcatctggatctcgcttgccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagtgtgggcaccaaccatctcggacatttccttctttcaaggttgctgctagatgacctcaagcaatcagattatccacaaaagcgccttataattgttggctccataacaggaaacacaaatactttggctggaaatgtgccaccaaaggctaatcttggagatctacgaggactttcaggagggttgaatagtttaaactgctcacccatgattgatggaggagaatttgatggtgccaaagcctataaagacagcaaagtctgtaacatgcttaccatgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="37977" stop="36371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37677" g_stop="37398" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37397" i_stop="36845" i_length="553">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36844" g_stop="36671" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="454" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E291116" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37677" e_stop="37398"/>
          <exon e_start="36844" e_stop="36671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAGGTACTGATCTGAAACTTAAAAGGTTATGCTCTCATGTCCAGCATACTCGTTTTCTTTGAGCAACTTAATTTCACGTCACCTAATGTAAGATAGGAACAAATTATCAAAAGCTGTAAAAGTTAGAATTCTACAAAGTAGCATGTAGATGTTCTTACTTATAAGTAATTTAGCACTAACATATGTAGATATACACAAGACAGAGAATGGAGAAACTACACGTCATGATGTGTCAAATAAAACGGTGGACAGCATATATGGGGGAAAAACAGTGTTTTGTTCTTTGAGCTTCTGAAGTACATACTTTAGTAGCACTTAACGCTATTTGACTTTAGTACGAGTATTATCTTCCCCCAAAAAATAAAATGCTGGACATCCTGTACAACTTCTTGTGAAATAGTAGATCTTAGCGCTATTTTAGACTTTAGTACGAATATTACCTTCCCCCAAAAAATAAAATGCTGGACATCATGTACAACTTCTCCTTGTGAATTATCATTTTATTAAAGGAAATCTGAGATGATTGAAATCTAATACTATAATTTTTCTGCTACAGGAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAG</genome_strand>
        <mrna_strand>GAAAATTACACTGTCATGCATCTGGATCTCGCTTGCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731310" ref_strand="+" ref_description="SGN-E731310 [LA26DA06]">
      <seq>ggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagtgtgggcaccaaccatctcggacatttccttctttcaaggttgctgctagatgacctcaagcaatcagattatccacaaaagcgccttataattgttggctccataacaggaaacacaaatactttggctggaaatgtgccaccaaaggctaatcttggagatctacgaggactttcaggagggttgaatagtttaaactgctcacccatgattgatggaggagaatttgatggtgccaaagcctataaagacagcaaagtctgtaacatgcttaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39214" stop="36375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38914" g_stop="38863" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="151" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37398" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="683" r_length="532" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37397" i_stop="36845" i_length="553">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36844" g_stop="36675" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="853" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E731310" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38914" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37398"/>
          <exon e_start="36844" e_stop="36675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAGGTACTGATCTGAAACTTAAAAGGTTATGCTCTCATGTCCAGCATACTCGTTTTCTTTGAGCAACTTAATTTCACGTCACCTAATGTAAGATAGGAACAAATTATCAAAAGCTGTAAAAGTTAGAATTCTACAAAGTAGCATGTAGATGTTCTTACTTATAAGTAATTTAGCACTAACATATGTAGATATACACAAGACAGAGAATGGAGAAACTACACGTCATGATGTGTCAAATAAAACGGTGGACAGCATATATGGGGGAAAAACAGTGTTTTGTTCTTTGAGCTTCTGAAGTACATACTTTAGTAGCACTTAACGCTATTTGACTTTAGTACGAGTATTATCTTCCCCCAAAAAATAAAATGCTGGACATCCTGTACAACTTCTTGTGAAATAGTAGATCTTAGCGCTATTTTAGACTTTAGTACGAATATTACCTTCCCCCAAAAAATAAAATGCTGGACATCATGTACAACTTCTCCTTGTGAATTATCATTTTATTAAAGGAAATCTGAGATGATTGAAATCTAATACTATAATTTTTCTGCTACAGGAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATG</genome_strand>
        <mrna_strand>GGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246165" ref_strand="+" ref_description="SGN-E246165 [cLEF-40-H21]">
      <seq>actgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagtgtgggcaccaaccatctcggacatttccttctttcaaggttgctgctagatgacctcaagcaatcagattatccacaaaagcgccttataattgttggctccataacaggaaacacaaatactttggctggaaatgtgccaccaaaggctaatcttggagatctacgaggactttcaggagggttgaatagtttaaactgctcacccatgattgatggaggagaatttgatggtgccaaagcctataaagacagcaaagtctgtaacatgcttacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="37968" stop="36377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37668" g_stop="37398" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37397" i_stop="36845" i_length="553">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36844" g_stop="36677" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="439" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E246165" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37668" e_stop="37398"/>
          <exon e_start="36844" e_stop="36677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAGGTACTGATCTGAAACTTAAAAGGTTATGCTCTCATGTCCAGCATACTCGTTTTCTTTGAGCAACTTAATTTCACGTCACCTAATGTAAGATAGGAACAAATTATCAAAAGCTGTAAAAGTTAGAATTCTACAAAGTAGCATGTAGATGTTCTTACTTATAAGTAATTTAGCACTAACATATGTAGATATACACAAGACAGAGAATGGAGAAACTACACGTCATGATGTGTCAAATAAAACGGTGGACAGCATATATGGGGGAAAAACAGTGTTTTGTTCTTTGAGCTTCTGAAGTACATACTTTAGTAGCACTTAACGCTATTTGACTTTAGTACGAGTATTATCTTCCCCCAAAAAATAAAATGCTGGACATCCTGTACAACTTCTTGTGAAATAGTAGATCTTAGCGCTATTTTAGACTTTAGTACGAATATTACCTTCCCCCAAAAAATAAAATGCTGGACATCATGTACAACTTCTCCTTGTGAATTATCATTTTATTAAAGGAAATCTGAGATGATTGAAATCTAATACTATAATTTTTCTGCTACAGGAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCA</genome_strand>
        <mrna_strand>ACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737348" ref_strand="+" ref_description="SGN-E737348 [LC09BG12]">
      <seq>cgcataaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagtgtgggcaccaaccatctcggacatttccttctttcaaggttgctgctagatgacctcaagcaatcagattatccacaaaagcgccttataattgttggctccataacaggaaacacaaatactttggctggaaatgtgccaccaaaggctaatcttggagatctacgaggactttcaggagggttgaatagtttaaactgctcacccatgattgatggaggagaatttgatggtgcccaagcctataaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39082" stop="36404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38873" g_stop="38863" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.727"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="110" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37398" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="642" r_length="532" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37397" i_stop="36845" i_length="553">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36844" g_stop="36704" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="783" r_length="141" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E737348" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38873" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37398"/>
          <exon e_start="36844" e_stop="36704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAGGTACTGATCTGAAACTTAAAAGGTTATGCTCTCATGTCCAGCATACTCGTTTTCTTTGAGCAACTTAATTTCACGTCACCTAATGTAAGATAGGAACAAATTATCAAAAGCTGTAAAAGTTAGAATTCTACAAAGTAGCATGTAGATGTTCTTACTTATAAGTAATTTAGCACTAACATATGTAGATATACACAAGACAGAGAATGGAGAAACTACACGTCATGATGTGTCAAATAAAACGGTGGACAGCATATATGGGGGAAAAACAGTGTTTTGTTCTTTGAGCTTCTGAAGTACATACTTTAGTAGCACTTAACGCTATTTGACTTTAGTACGAGTATTATCTTCCCCCAAAAAATAAAATGCTGGACATCCTGTACAACTTCTTGTGAAATAGTAGATCTTAGCGCTATTTTAGACTTTAGTACGAATATTACCTTCCCCCAAAAAATAAAATGCTGGACATCATGTACAACTTCTCCTTGTGAATTATCATTTTATTAAAGGAAATCTGAGATGATTGAAATCTAATACTATAATTTTTCTGCTACAGGAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAG</genome_strand>
        <mrna_strand>CGCATAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCCAAGCCTATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729649" ref_strand="+" ref_description="SGN-E729649 [LA21CG04]">
      <seq>ccccaaccacaccttcttaagcagagtgttgtaacaaagagttgagtgaaaaaatcattaggtgcaaaatggctctacaagcaacatctttgcttccaactgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagtgtgggcaccaaccatctcggacatttccttctttcaaggttgctgctagatgacctcaagcaatcagattatccacaaaagcgccttataattgttggctccataacaggaaacacaaatactttggctggaaatgtgccaccaaaggctaatcttggagatctacgaggactttcaggaagggtgaatagtttaaactgctcacccatgattgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39284" stop="36436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38984" g_stop="38863" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="221" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37398" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="753" r_length="532" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37397" i_stop="36845" i_length="553">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36844" g_stop="36736" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="862" r_length="109" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E729649" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38984" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37398"/>
          <exon e_start="36844" e_stop="36736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAGGTACTGATCTGAAACTTAAAAGGTTATGCTCTCATGTCCAGCATACTCGTTTTCTTTGAGCAACTTAATTTCACGTCACCTAATGTAAGATAGGAACAAATTATCAAAAGCTGTAAAAGTTAGAATTCTACAAAGTAGCATGTAGATGTTCTTACTTATAAGTAATTTAGCACTAACATATGTAGATATACACAAGACAGAGAATGGAGAAACTACACGTCATGATGTGTCAAATAAAACGGTGGACAGCATATATGGGGGAAAAACAGTGTTTTGTTCTTTGAGCTTCTGAAGTACATACTTTAGTAGCACTTAACGCTATTTGACTTTAGTACGAGTATTATCTTCCCCCAAAAAATAAAATGCTGGACATCCTGTACAACTTCTTGTGAAATAGTAGATCTTAGCGCTATTTTAGACTTTAGTACGAATATTACCTTCCCCCAAAAAATAAAATGCTGGACATCATGTACAACTTCTCCTTGTGAATTATCATTTTATTAAAGGAAATCTGAGATGATTGAAATCTAATACTATAATTTTTCTGCTACAGGAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGG</genome_strand>
        <mrna_strand>CCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAACATCTTTGCTTCCAACTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAAGGGTGAATAGTTTAAACTGCTCACCCATGATTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272752" ref_strand="+" ref_description="SGN-E272752 [cLEM-21-J23]">
      <seq>tttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagtgtgggcaccaaccatctcggacatttccttctttcaaggttgctgctagatgacctcaagcaatcagattatccacaaaagcgccttataattgttggctccataacaggaaacacaaatactttggctggaaatgtgccaccaaaggctaatcttggagatctacgangactttcagganggttgaatagtttaaactgctcacccatgattgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39041" stop="36436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38741" g_stop="38682" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37929" g_stop="37398" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="592" r_length="532" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37397" i_stop="36845" i_length="553">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36844" g_stop="36736" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="701" r_length="109" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E272752" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38741" e_stop="38682"/>
          <exon e_start="37929" e_stop="37398"/>
          <exon e_start="36844" e_stop="36736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAGGTACTGATCTGAAACTTAAAAGGTTATGCTCTCATGTCCAGCATACTCGTTTTCTTTGAGCAACTTAATTTCACGTCACCTAATGTAAGATAGGAACAAATTATCAAAAGCTGTAAAAGTTAGAATTCTACAAAGTAGCATGTAGATGTTCTTACTTATAAGTAATTTAGCACTAACATATGTAGATATACACAAGACAGAGAATGGAGAAACTACACGTCATGATGTGTCAAATAAAACGGTGGACAGCATATATGGGGGAAAAACAGTGTTTTGTTCTTTGAGCTTCTGAAGTACATACTTTAGTAGCACTTAACGCTATTTGACTTTAGTACGAGTATTATCTTCCCCCAAAAAATAAAATGCTGGACATCCTGTACAACTTCTTGTGAAATAGTAGATCTTAGCGCTATTTTAGACTTTAGTACGAATATTACCTTCCCCCAAAAAATAAAATGCTGGACATCATGTACAACTTCTCCTTGTGAATTATCATTTTATTAAAGGAAATCTGAGATGATTGAAATCTAATACTATAATTTTTCTGCTACAGGAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGG</genome_strand>
        <mrna_strand>TTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGANGACTTTCAGGANGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730649" ref_strand="+" ref_description="SGN-E730649 [LA24DA10]">
      <seq>ccattacagaacccaccaccccaaacccccaaccacaccttcttaagcagagtgttgtaacaaagagttgagtgaaaaaatcattaggtgcaaaatggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagtgtgggcaccaaccatctcggacatttccttctttcaaggttgctgctagatgacctcaagcaatcagattatccacaaaagcgccttataattgttggctccataacaggaaacacaaatactttggctggaaatgtgccaccaaaggctaatcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39309" stop="36496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39010" g_stop="38863" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="247" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37398" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="779" r_length="532" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37397" i_stop="36845" i_length="553">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36844" g_stop="36796" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="828" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E730649" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39010" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37398"/>
          <exon e_start="36844" e_stop="36796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCCAGAACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAGGTACTGATCTGAAACTTAAAAGGTTATGCTCTCATGTCCAGCATACTCGTTTTCTTTGAGCAACTTAATTTCACGTCACCTAATGTAAGATAGGAACAAATTATCAAAAGCTGTAAAAGTTAGAATTCTACAAAGTAGCATGTAGATGTTCTTACTTATAAGTAATTTAGCACTAACATATGTAGATATACACAAGACAGAGAATGGAGAAACTACACGTCATGATGTGTCAAATAAAACGGTGGACAGCATATATGGGGGAAAAACAGTGTTTTGTTCTTTGAGCTTCTGAAGTACATACTTTAGTAGCACTTAACGCTATTTGACTTTAGTACGAGTATTATCTTCCCCCAAAAAATAAAATGCTGGACATCCTGTACAACTTCTTGTGAAATAGTAGATCTTAGCGCTATTTTAGACTTTAGTACGAATATTACCTTCCCCCAAAAAATAAAATGCTGGACATCATGTACAACTTCTCCTTGTGAATTATCATTTTATTAAAGGAAATCTGAGATGATTGAAATCTAATACTATAATTTTTCTGCTACAGGAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGG</genome_strand>
        <mrna_strand>CCATTACAGAACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730585" ref_strand="+" ref_description="SGN-E730585 [LA24CC11]">
      <seq>cactgaacccaccaccccaaacccccaaccacaccttcttaagcagagtgttgtaacaaagagttgagtgaaaaaatcattaggtgcaaaatggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagtgtgggcaccaaccatctcggacatttccttctttcaaggttgctgctagatgacctcaagcaatcagattatccacaaaagcgccttataattgttggctccataacaggaaacacaaatactttggctggaaatgtgccaccaaaggctaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39304" stop="36499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39006" g_stop="38863" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="243" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37398" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="775" r_length="532" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37397" i_stop="36845" i_length="553">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36844" g_stop="36799" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="776" r_stop="821" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E730585" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39006" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37398"/>
          <exon e_start="36844" e_stop="36799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGAACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAGGTACTGATCTGAAACTTAAAAGGTTATGCTCTCATGTCCAGCATACTCGTTTTCTTTGAGCAACTTAATTTCACGTCACCTAATGTAAGATAGGAACAAATTATCAAAAGCTGTAAAAGTTAGAATTCTACAAAGTAGCATGTAGATGTTCTTACTTATAAGTAATTTAGCACTAACATATGTAGATATACACAAGACAGAGAATGGAGAAACTACACGTCATGATGTGTCAAATAAAACGGTGGACAGCATATATGGGGGAAAAACAGTGTTTTGTTCTTTGAGCTTCTGAAGTACATACTTTAGTAGCACTTAACGCTATTTGACTTTAGTACGAGTATTATCTTCCCCCAAAAAATAAAATGCTGGACATCCTGTACAACTTCTTGTGAAATAGTAGATCTTAGCGCTATTTTAGACTTTAGTACGAATATTACCTTCCCCCAAAAAATAAAATGCTGGACATCATGTACAACTTCTCCTTGTGAATTATCATTTTATTAAAGGAAATCTGAGATGATTGAAATCTAATACTATAATTTTTCTGCTACAGGAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCT</genome_strand>
        <mrna_strand>CACTGAACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727876" ref_strand="+" ref_description="SGN-E727876 [LA16AB01]">
      <seq>ccacccataccttcttaagcagagtgttgtaacaaagagttgagtgaaaaaatcattaggtgcaaaatggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagtgtgggcaccaaccatctcggacatttccttctttcaaggttgctgctagatgacctncagcaatcagattatccancaaagcgccttataattgttggctccntaacaggaaacacaaatactttggctggaaatgtgccaccaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39282" stop="36506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38982" g_stop="38863" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="219" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37398" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="751" r_length="532" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37397" i_stop="36845" i_length="553">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36844" g_stop="36807" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="789" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E727876" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38982" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37398"/>
          <exon e_start="36844" e_stop="36807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAGGTACTGATCTGAAACTTAAAAGGTTATGCTCTCATGTCCAGCATACTCGTTTTCTTTGAGCAACTTAATTTCACGTCACCTAATGTAAGATAGGAACAAATTATCAAAAGCTGTAAAAGTTAGAATTCTACAAAGTAGCATGTAGATGTTCTTACTTATAAGTAATTTAGCACTAACATATGTAGATATACACAAGACAGAGAATGGAGAAACTACACGTCATGATGTGTCAAATAAAACGGTGGACAGCATATATGGGGGAAAAACAGTGTTTTGTTCTTTGAGCTTCTGAAGTACATACTTTAGTAGCACTTAACGCTATTTGACTTTAGTACGAGTATTATCTTCCCCCAAAAAATAAAATGCTGGACATCCTGTACAACTTCTTGTGAAATAGTAGATCTTAGCGCTATTTTAGACTTTAGTACGAATATTACCTTCCCCCAAAAAATAAAATGCTGGACATCATGTACAACTTCTCCTTGTGAATTATCATTTTATTAAAGGAAATCTGAGATGATTGAAATCTAATACTATAATTTTTCTGCTACAGGAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAG</genome_strand>
        <mrna_strand>CCACCCATACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTNCAGCAATCAGATTATCCANCAAAGCGCCTTATAATTGTTGGCTCCNTAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323143" ref_strand="+" ref_description="SGN-E323143 [cTOB-28-P21]">
      <seq>agcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagtgtgggcaccaaccatctcggacatttccttctttcaaggttgctgctagatgacctcaagcaatcagattatcccacaaagcgcctttatattgttnggctccataacaggaaacacaaatactttgggctggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39202" stop="36518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38902" g_stop="38863" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="139" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37398" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="672" r_length="533" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37397" i_stop="36845" i_length="553">
            <donor d_prob="0.981" d_score="0.84"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36844" g_stop="36818" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="700" r_length="28" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E323143" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38902" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37398"/>
          <exon e_start="36844" e_stop="36818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTT-GGCTCCATAACAGGTACTGATCTGAAACTTAAAAGGTTATGCTCTCATGTCCAGCATACTCGTTTTCTTTGAGCAACTTAATTTCACGTCACCTAATGTAAGATAGGAACAAATTATCAAAAGCTGTAAAAGTTAGAATTCTACAAAGTAGCATGTAGATGTTCTTACTTATAAGTAATTTAGCACTAACATATGTAGATATACACAAGACAGAGAATGGAGAAACTACACGTCATGATGTGTCAAATAAAACGGTGGACAGCATATATGGGGGAAAAACAGTGTTTTGTTCTTTGAGCTTCTGAAGTACATACTTTAGTAGCACTTAACGCTATTTGACTTTAGTACGAGTATTATCTTCCCCCAAAAAATAAAATGCTGGACATCCTGTACAACTTCTTGTGAAATAGTAGATCTTAGCGCTATTTTAGACTTTAGTACGAATATTACCTTCCCCCAAAAAATAAAATGCTGGACATCATGTACAACTTCTCCTTGTGAATTATCATTTTATTAAAGGAAATCTGAGATGATTGAAATCTAATACTATAATTTTTCTGCTACAGGAAACACAAATACTTT-GGCTGGAAATG</genome_strand>
        <mrna_strand>AGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCCACAAAGCGCCTTTATATTGTTNGGCTCCATAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACACAAATACTTTGGGCTGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315682" ref_strand="+" ref_description="SGN-E315682 [cTOA-22-P12]">
      <seq>gcaaaatggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagtgtgggcaccaaccatctcggacatttccttctttcaaggttgctgctagatgnacctcagcaatcagattatccacaaaagcgccttataattgttggctccataacaggaaacancaaatactttggctggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39221" stop="36519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38921" g_stop="38863" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="158" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37398" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="690" r_length="532" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37397" i_stop="36845" i_length="553">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36844" g_stop="36819" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="717" r_length="27" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E315682" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38921" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37398"/>
          <exon e_start="36844" e_stop="36819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATG-ACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAGGTACTGATCTGAAACTTAAAAGGTTATGCTCTCATGTCCAGCATACTCGTTTTCTTTGAGCAACTTAATTTCACGTCACCTAATGTAAGATAGGAACAAATTATCAAAAGCTGTAAAAGTTAGAATTCTACAAAGTAGCATGTAGATGTTCTTACTTATAAGTAATTTAGCACTAACATATGTAGATATACACAAGACAGAGAATGGAGAAACTACACGTCATGATGTGTCAAATAAAACGGTGGACAGCATATATGGGGGAAAAACAGTGTTTTGTTCTTTGAGCTTCTGAAGTACATACTTTAGTAGCACTTAACGCTATTTGACTTTAGTACGAGTATTATCTTCCCCCAAAAAATAAAATGCTGGACATCCTGTACAACTTCTTGTGAAATAGTAGATCTTAGCGCTATTTTAGACTTTAGTACGAATATTACCTTCCCCCAAAAAATAAAATGCTGGACATCATGTACAACTTCTCCTTGTGAATTATCATTTTATTAAAGGAAATCTGAGATGATTGAAATCTAATACTATAATTTTTCTGCTACAGGAAACA-CAAATACTTTGGCTGGAAAT</genome_strand>
        <mrna_strand>GCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGNACCTC-AGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACANCAAATACTTTGGCTGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728030" ref_strand="+" ref_description="SGN-E728030 [LA16CA01]">
      <seq>atccttctagaacccaccaccccaaacccccaaccacaccttcttaagcagagtgttgtaacaaagagttgagtgaaaaaatcattaggtgcaaaatggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagtgtgggcaccaaccatctcggacatttccttctttcaaggttgctgctagatgacctcaagcaatcagattatccacaaaagcgccttataattgttggctccataacaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39311" stop="37095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39011" g_stop="38863" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="248" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37398" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="780" r_length="532" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E728030" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39011" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTCCAGAACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG</genome_strand>
        <mrna_strand>ATCCTTCTAGAACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328971" ref_strand="+" ref_description="SGN-E328971 [cTOC-24-P4]">
      <seq>gctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagtgtgggcaccaaccatctcggacatttccttctttcaggttgctgctagatgacctcaagcaatcagattatccacaaaagcgccttataattgttggctccataacaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39213" stop="37095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38913" g_stop="38863" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="150" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37398" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="681" r_length="531" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E328971" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38913" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG</genome_strand>
        <mrna_strand>GCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTC-AGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348662" ref_strand="+" ref_description="SGN-E348662 [cTOF-30-H3]">
      <seq>accttcttaagcagagtgttgtaacaaagagttgagtgaaaaaatcattaggtgcaaaatggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagccttagtgtgggcaccaaccatctcggacatttccttctttcaaggttgctgctagatgacctcaaagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39274" stop="37142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38974" g_stop="38863" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="211" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37442" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="700" r_length="489" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E348662" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38974" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAG-CTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATC</genome_strand>
        <mrna_strand>ACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334408" ref_strand="+" ref_description="SGN-E334408 [cTOD-21-N12]">
      <seq>attccagaacccaccaccccaaacccccaaccacaccttcttaagcagagtgttgtaacaaagagttgagtgaaaaaatcattaggtgcaaaatggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagtgtgggcaccaacatctcggacattccttctttcaggttgctgctagatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39308" stop="37153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39008" g_stop="38863" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="245" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37453" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="719" r_length="474" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E334408" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39008" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCAGAACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGAC</genome_strand>
        <mrna_strand>ATTCCAGAACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAA-CATCTCGGACA-TTCCTTCTTTC-AGGTTGCTGCTAGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710203" ref_strand="+" ref_description="SGN-E710203 [FA54CE05]">
      <seq>taatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcaccaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagcgtccgccaatttgtacataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttactgtgggcaccaaccatctcggacatttccttctttcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="38114" stop="37168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37814" g_stop="37468" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E710203" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37814" e_stop="37468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGG</genome_strand>
        <mrna_strand>TAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCACCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGCGTCCGCCAATTTGTACATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTACTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252067" ref_strand="+" ref_description="SGN-E252067 [cLEG-8-B4]">
      <seq>taaaacatcaagtgctaatctcaatgacagtagcttctttggagttgcattgtcgtgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagtgtgggcaccaaccatctcggacatttccttctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39078" stop="37172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38778" g_stop="38682" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37929" g_stop="37472" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="555" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E252067" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38778" e_stop="38682"/>
          <exon e_start="37929" e_stop="37472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTC</genome_strand>
        <mrna_strand>TAAAACATCAAGTGCTAATCTCAATGACAGTAGCTTCTTTGGAGTTGCATTGTCGTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340806" ref_strand="+" ref_description="SGN-E340806 [cTOF-5-O20]">
      <seq>ccaaccacaccttcttaagcagagtgttgtaacaaagagttgagtgaaaaaatcattaggtgcaaaatggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagtgtgggcaccaaccatctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39282" stop="37188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38982" g_stop="38863" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="219" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37488" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="661" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E340806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38982" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCG</genome_strand>
        <mrna_strand>CCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253993" ref_strand="+" ref_description="SGN-E253993 [cLEG-34-E13]">
      <seq>ctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaacttttacggctgatggatttgagcttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39059" stop="37207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38759" g_stop="38682" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37929" g_stop="37507" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="501" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E253993" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38759" e_stop="38682"/>
          <exon e_start="37929" e_stop="37507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGT</genome_strand>
        <mrna_strand>CTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272643" ref_strand="+" ref_description="SGN-E272643 [cLEM-21-J10]">
      <seq>gctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgaccaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagccctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcaccgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattcccaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtcccccaatttgtagataatttcccacgttcagggaggccacttgatgcccctagtatgccatgctgcagtgtaccttgcccactgctaaagagcccacttttacggctgatggatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39042" stop="37215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38743" g_stop="38682" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37929" g_stop="37515" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="482" r_length="420" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E272643" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38743" e_stop="38682"/>
          <exon e_start="37929" e_stop="37515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGA-CAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAG-CCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCA-CGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATG-CGCTAGTATGCAATGCTGCAGTGTA-CTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTG</genome_strand>
        <mrna_strand>GCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACCAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACCGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCCAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCCCCAATTTGTAGATAATTTCCCACGTTCAGGGAGGCCACTTGATGCCCCTAGTATGCCATGCTGCAGTGTACCTTGCCCACTGCTAAAGAGCCCACTTTTACGGCTGATGGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347342" ref_strand="+" ref_description="SGN-E347342 [cTOF-33-H7]">
      <seq>aaccacaccttcttaagcagagtgttgtaacaaagagttgagtgaaaaaatcattaggtgcaaaatggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgctaaagagccaactttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39280" stop="37230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38980" g_stop="38863" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="217" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37530" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="617" r_length="400" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E347342" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38980" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTA</genome_strand>
        <mrna_strand>AACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334597" ref_strand="+" ref_description="SGN-E334597 [cTOD-23-A2]">
      <seq>attccagaacccaccaccccaaacccccaaccacaccttcttaagcagagtgttgtaacaaagagttgagtgaaaaaatcattaggtgcaaaatggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagatatttccgacgttcagggnaggcacttgatgcgctagtatgcaatgctgcagtgtacttgccaactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39308" stop="37246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39008" g_stop="38863" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="245" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37546" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="628" r_length="383" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E334597" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39008" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCAGAACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCT</genome_strand>
        <mrna_strand>ATTCCAGAACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGAT-ATTTCCGACGTTCAGGGNAGGCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314626" ref_strand="+" ref_description="SGN-E314626 [cTOA-20-H19]">
      <seq>attccagaacccaccaccccaaacccccaaccacaccttcttaagcagagtgttgtaacaaagagttgagtgaaaaaaatcattaggtgcaaaatggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcaatgctgcagtgtactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39308" stop="37256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39008" g_stop="38863" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="246" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37556" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="620" r_length="374" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E314626" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39008" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCAGAACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGA-AAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTT</genome_strand>
        <mrna_strand>ATTCCAGAACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370300" ref_strand="+" ref_description="SGN-E370300 [TUS-28-G9]">
      <seq>aacccaccaccccaaacccccaaccacaccttcttaagcagagtgttgtaacaaagagttgagtgaaaaaatcattacgtgctaaatggctctactagcagcatctttgctttcatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtacgcttctttggagttgcattgtcatgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattatagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcacgaaaggcaatgtgataatcaccggagcctcctctggtttaagactagctacagcaaaggctataggcgagtcaagagactggcacgttataatggcctgtacggacttcctcatggctgaaatagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataatttccgacgttcagggaggccacttgatgcgctagtatgcactgctgcagtgtactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39301" stop="37256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39001" g_stop="38863" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="239" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37556" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="613" r_length="374" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E370300" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39001" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTA-GCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTT</genome_strand>
        <mrna_strand>AACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTACGTGCTAAATGGCTCTACTAGCAGCATCTTTGCTTTCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTACGCTTCTTTGGAGTTGCATTGTCATGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTATAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCACGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAAGACTAGCTACAGCAAAGGCTATAGGCGAGTCAAGAGACTGGCACGTTATAATGGCCTGTACGGACTTCCTCATGGCTGAAATAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCACTGCTGCAGTGTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358193" ref_strand="+" ref_description="SGN-E358193 [cLHT-23-F13]">
      <seq>ggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaagaaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaaccctcaggaaaggcaatgtgataattactggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaagagactggcacgttataatggcttgtaaggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatcttgcttcccttgaaagtgtccgccaatttgttgataatttccgacgttcaaggaggccacttgatgcgctagtatgcaatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39214" stop="37265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38914" g_stop="38863" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="151" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37565" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="516" r_length="365" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E358193" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38914" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGC</genome_strand>
        <mrna_strand>GGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGAAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACCCTCAGGAAAGGCAATGTGATAATTACTGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAAGAGACTGGCACGTTATAATGGCTTGTAAGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTTGCTTCCCTTGAAAGTGTCCGCCAATTTGTTGATAATTTCCGACGTTCAAGGAGGCCACTTGATGCGCTAGTATGCAATGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313000" ref_strand="+" ref_description="SGN-E313000 [cTOA-14-B10]">
      <seq>aaccacaccttcttaagcagagtgttgtaacaaagagttgagtgaaaaaatcattaggtgcaaaatggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaaagtgtccgccaatttgtagataattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39280" stop="37310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38980" g_stop="38863" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="217" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37610" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="537" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E313000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38980" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTT</genome_strand>
        <mrna_strand>AACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725582" ref_strand="+" ref_description="SGN-E725582 [LA04AE08]">
      <seq>cccccaaccacaccttcttaagcagagtgttgtaacaaagagttgagtgaaaaaatcattaggtgcaaaatggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcanaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgcttcccttgaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39285" stop="37332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38985" g_stop="38863" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="222" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37632" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="519" r_length="297" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E725582" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38985" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTG</genome_strand>
        <mrna_strand>CCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCANAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTG-AAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725600" ref_strand="+" ref_description="SGN-E725600 [LA04AG06]">
      <seq>gatcattccagaacccaccaccccaaacccccaaccacaccttcttaagcagagtgttgtaacaaagagttgagtgaaaaaatcattaggtgcaaaatggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgagggaaaatacactgtcatgcatctggatctcgcttcccttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39312" stop="37336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39012" g_stop="38863" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="249" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37636" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="542" r_length="293" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E725600" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39012" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCATTCCAGAACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAA</genome_strand>
        <mrna_strand>GATCATTCCAGAACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAGGGAAAA-TACACTGTCATGCATCTGGATCTCGCTTCCCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320590" ref_strand="+" ref_description="SGN-E320590 [cTOB-22-N11]">
      <seq>cacaccttcttaagcagagtgttgtaacaaagagttgagtgaaaaaatcattaggtgcaaaatggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactacctacagcaaaggctataggcgagtcaagagactggcacgttataatggcctgtacggacttcctcaaggctgaacaagcagcaaaatcacttggcattccgaaggaaaattacactggcatgcatctggatctcgcttccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39277" stop="37340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38977" g_stop="38863" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="214" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37640" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="504" r_length="290" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E320590" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38977" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCT</genome_strand>
        <mrna_strand>CACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTACCTACAGCAAAGGCTATAGGCGAGTCAAGAGACTGGCACGTTATAATGGCCTGTACGGACTTCCTCAAGGCTGAACAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGGCATGCATCTGGATCTCGCTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270936" ref_strand="+" ref_description="SGN-E270936 [cLEM-6-L12]">
      <seq>aacccaccaccccaaacccccaaccacaccttcttaagcagagtgttgtaacaaagagttgagtgaaaaaatcattaggtgcaaaatggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggcattccgaaggaaaattacactgtcatgcatctggatctcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39301" stop="37345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39001" g_stop="38863" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="238" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37645" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="523" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E270936" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39001" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCT</genome_strand>
        <mrna_strand>AACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315077" ref_strand="+" ref_description="SGN-E315077 [cTOB-4-M14]">
      <seq>aaacccccaaccacaccttcttaagcagagtgttgtaacaaagagttgagtgaaaaaatcattaggtgcaaaatggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcctgtagggacttcctcaaagctgaaaaagcagcaaaatcacttggcattccgaaagaaaattacactgtcatgcatctggatctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39288" stop="37347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38988" g_stop="38863" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="225" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37647" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="508" r_length="283" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E315077" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38988" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCG</genome_strand>
        <mrna_strand>AAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAAGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAAGAAAATTACACTGTCATGCATCTGGATCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358539" ref_strand="+" ref_description="SGN-E358539 [cLHT-22-B13]">
      <seq>cacaccttcttaagtagagtgctgtaactaagagttgagtgaaaaaatcattaggtgcaaaatggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaagaaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaaccctcaggaaaggcaatgtgataattactggagcctcctctggtttaggactagctacagcaaaggctataggcgagtcaggagactggcacgttataatggcttgtagggacttcctcaaggctgaaaaagcagcaaaatcacttggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39277" stop="37386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38977" g_stop="38863" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="214" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37686" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="458" r_length="244" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E358539" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38977" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCA</genome_strand>
        <mrna_strand>CACACCTTCTTAAGTAGAGTGCTGTAACTAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGAAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACCCTCAGGAAAGGCAATGTGATAATTACTGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCTTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279123" ref_strand="-" ref_description="SGN-E279123 [cLEL-4-D1](-)">
      <seq>gcacgaggaacccaccaccctaaacccccaaccacaccttcttaaggagagtgttgtaacaaagagttgagtgaaaaaatcattaggtgcaaaatggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaagacagaagaaaacactcaggaaaggcaatgtgataatcaccggagcctcctctggtttaggactagctacagcaaaggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39305" stop="37468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39010" g_stop="38863" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="246" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37768" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="408" r_length="162" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E279123" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279123" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39010" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCCAGAACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCT</genome_strand>
        <mrna_strand>GCA-CGAGGAACCCACCACCCTAAACCCCCAACCACACCTTCTTAAGGAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAAGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322522" ref_strand="+" ref_description="SGN-E322522 [cTOB-26-F3]">
      <seq>tcattccagaacccaccaccccaaacccccaaccacaccttcttaagcagagtgttgtaacaaagagttgagtgaaaaaatcattaggtgcaaaatggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccaatctacctcaggacagaagaaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39310" stop="37533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39010" g_stop="38863" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="247" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37833" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="344" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E322522" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39010" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCCAGAACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACAC</genome_strand>
        <mrna_strand>TCATTCCAGAACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAATCTACCTCAGGACAGAAGAAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311545" ref_strand="+" ref_description="SGN-E311545 [cTOA-6-M23]">
      <seq>tccagaacccaccaccccaaacccccaaccacaccttcttaagcagagtgttgtaacaaagagttgagtgaaaaaatcattaggtgcaaaatggctctacaagcagcatctttgcttccatctgcattttctctacacaaagagggtaaaacatcaagtgctaatctcaaggacagtagcttctttggagttgcattgtcttgcaatctgaaatctaaatttactcctgctgcaggaaacaaggaattgacaaggaaattagcgattgtacctattagagcacaaacagctgctaccactcctgcaatcacccagtctacctcaggacagaagaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="39306" stop="37534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39006" g_stop="38863" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38780" g_stop="38682" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="243" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="37834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="339" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E311545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39006" e_stop="38863"/>
          <exon e_start="38780" e_stop="38682"/>
          <exon e_start="37929" e_stop="37834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGAACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAGGTAAAAGTTGCAAACTTTTCACTTAACTAGCTTTAATTACTGACCTGGAAATGATTATCTGAAGCTCAATTGTGGCTGGCAGGGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAGGTATCATAAAAATACAATCTTTGTGTTTAAATCTTTGATTTTAGTAGGCGTTTCGACATGAATTTGATGATATTGGGGGGGGGGGTTTACTTTTGGGATAGTGTTGTTCGGGGCCAGTTTTCGCGCACTTGTTAAAATTTGTATGTCCAAACAGGTCTATAGGGTGCAAGTTGTTAAATAGCAACTATCTACTAAATGAAAAAGTATATTATAGCACAAGAAGTTCAATTAGAGTATATCTCCTCTTCATGGAAAGTTATTTTTAGGAATTCAATTTACTTACCAGAGTATAGAAGCAAGAGGAGCCCAAGAAGCAGTATTTATTTCAAGCTGCAAGACAGTGCAAATATTTAACAGTTCTAGATTCTTCTTGGGTTAGTGTAGAACATAAAATTGATGGTCTTTTGGAGTTTTGGATAATCCATTTGAGGCAGAAGCACATTTATGAACTTTTTCTTGATTCACCTCTTTTGTTGATTGACTGCTTGTTCATCAAATCATAAATAGAAACATCTCAGTTAAGCAAGAAAAAGCATATCGTCATGCGTTTATGGAGATGCAAATTGTGCGAATACTGACCTATAAATGAATAAAGCCCATGTTTTTGACCATTCTTCTTTCGTTGCATTTCTCTAACATTTCTTACTTGAAATGTATTGCTTAATTCCATTATGGAGAATGAAATAAGCTATATCATTCACTGCTTCATTCCATTTTAGAGTGTGAGGTAACATATCGCATATCATGCATAGGAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACA</genome_strand>
        <mrna_strand>TCCAGAACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG..................................................................................GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543222" ref_strand="+" ref_description="SGN-E543222 [TUS-64-O21](-)">
      <seq>gaaaaagaccgagaaggaaaatcaggttctactgtgtcggacattgatagtacaatctactacggagacttacccgagagttctccagatagcaaaccaaaacgccaaaacagacgaaggagtacaagaaagagttctgtttcggaaagtcagagatcttatcgtacatttgcacatgatacaaaagatcaaccttgctatgtcaaattcagaagcacaatgacttttgtcaagtgcatcgacgatcattccagatgcaacgagacaatggagaatcattgcagtttggaacatccatgttattactggatcactgataagaaaggcaacgtggaatctcctcttcgcgttccaaggaggagagtcaaaaccacaaaggactacatcaaccaagatcaaaatgttgaatcaatgaacgaacattctgtaaatcgcgatactgaggaggtattgaagagccaagaaacatgtgattcgacaatgtattcaacgtcaagaatgacatatcaaagggcaagagacgaaaatcaggccccttatttgagagcaatgactctgcctattgaaaggcctaaagattgcctcgtagacaactttcttcgatcaagttccttcccggttcaagagcctgaaaatggatcatacgaaaatagacatgtccatcctaagctaccaaactacgacgaaatagaagctacattcttggctctcaagaaagagaaattgcaaaagaaatgctagcgtaaaatcgaccatgagttagctatatttttctatgttctttggtcatataactagcagaagcatatttagattgtaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="61163" stop="59743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60863" g_stop="60044" g_length="820"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="821" r_length="821" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="822" polyA_stop="832"/>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E543222" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60863" e_stop="60044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGAACGAGAAGGAAA-TCAGGTTCTACTGTGTCGGACATTGATAGTACAATCTACTACGGAGACTTACCCGAGAGTTCTCCAGATAGCAAACCAAAACGCCAAAACAGACGAAGGAGTACAAGAAAGAGTTCTGTTTCGGAAAGTCAGAGATCTTATCGTACATTTGCACATGATACAAAAGATCAACCTTGCTATGTCAAATTCAGAAGCACAATGACTTTTGTCAAGTGCATCGACGATCATTCCAGATGCAACGAGACAATGGAGAATCATTGCAGTTTGGAACATCCATGTTATTACTGGATCACTGATAAGAAAGGCAACGTGGAATCTCCTCTTCGCGTTCCAAGGAGGAGAGTCAAAACCACAAAGGACTACATCAACCAAGATCAAAATGTTGAATCAATGAACGAACATTCTGTAAATCGCGATACTGAGGAGGTATTGAAGAGCCAAGAAACATGTGATTCGACAATGTATTCAACGTCAAGAATGACATATCAAAGGGCAAGAGACGAAAATCAGGCCCCTTATTTGAGAGCAATGACTCTGCCTATTGAAAGGCCTAAAGATTGCCTCGTAGACAACTTTCTTCGATCAAGTTCCTTCCCGGTTCAAGAGCCTGAAAATGGATCATACGAAAATAGACATGTCCATCCTAAGCTACCAAACTACGACGAAATAGAAGCTACATTCTTGGCTCTCAAGAAAGAGAAATTGCAAAAGAAATGCTAGCGTAAAATCGACCATGAGTTAGCTATATTTTTCTATGTTCTTTGGTCATATAACTAGCAGAAGCATATTTAGATTGTAAT</genome_strand>
        <mrna_strand>GAAAAAGACCGAGAAGGAAAATCAGGTTCTACTGTGTCGGACATTGATAGTACAATCTACTACGGAGACTTACCCGAGAGTTCTCCAGATAGCAAACCAAAACGCCAAAACAGACGAAGGAGTACAAGAAAGAGTTCTGTTTCGGAAAGTCAGAGATCTTATCGTACATTTGCACATGATACAAAAGATCAACCTTGCTATGTCAAATTCAGAAGCACAATGACTTTTGTCAAGTGCATCGACGATCATTCCAGATGCAACGAGACAATGGAGAATCATTGCAGTTTGGAACATCCATGTTATTACTGGATCACTGATAAGAAAGGCAACGTGGAATCTCCTCTTCGCGTTCCAAGGAGGAGAGTCAAAACCACAAAGGACTACATCAACCAAGATCAAAATGTTGAATCAATGAACGAACATTCTGTAAATCGCGATACTGAGGAGGTATTGAAGAGCCAAGAAACATGTGATTCGACAATGTATTCAACGTCAAGAATGACATATCAAAGGGCAAGAGACGAAAATCAGGCCCCTTATTTGAGAGCAATGACTCTGCCTATTGAAAGGCCTAAAGATTGCCTCGTAGACAACTTTCTTCGATCAAGTTCCTTCCCGGTTCAAGAGCCTGAAAATGGATCATACGAAAATAGACATGTCCATCCTAAGCTACCAAACTACGACGAAATAGAAGCTACATTCTTGGCTCTCAAGAAAGAGAAATTGCAAAAGAAATGCTAGCGTAAAATCGACCATGAGTTAGCTATATTTTTCTATGTTCTTTGGTCATATAACTAGCAGAAGCATATTTAGATTGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303744" ref_strand="+" ref_description="SGN-E303744 [cLEX-4-K11]">
      <seq>ttttttttaataaatatcacaaaagtgtgaatttgtcacaaggctaatcattttgtcagcttggaggaactcaacaaacatgtttaatttactctttggttggagaaaagcttctaaatgtaagaatttgattagaagggttcaaagacggattaagctattgaagaacaagagaagttgcattatcaaacaattgagggatgatttatctgagttacttagaaatggacattacgaaattgtcattgatagggttgaacagctttcgttggatgaacgaaaggttgcagtgtatgatttactggagagttactgtgaatttataatgatcaaccttccgtgtattcgaaaaaacaagcaagaaaacacaaacacttcaatctaaattcaatgttatacaactataatgaataatgatttttatgtttgttttgtttttctcagggactgtcctgatgatatcaatgaagcagtgtcaagtctcatttttgcatcagcaagactcggtgatgtgcctgagctagctgcaattcggaagttttttagtgaaagatatggtcagagattcgaaaaatctgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="63341" stop="61701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63041" g_stop="62922" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62921" i_stop="62698" i_length="224">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62697" g_stop="62565" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="253" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62564" i_stop="62330" i_length="235">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62329" g_stop="62001" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="582" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E303744" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63041" e_stop="62922"/>
          <exon e_start="62697" e_stop="62565"/>
          <exon e_start="62329" e_stop="62001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTAATAAATATCACAAAAGTGTGAATTTGTCACAAGGCTAATCATTTTGTCAGCTTGGAGGAACTCAACAAACATGTTTAATTTACTCTTTGGTTGGAGAAAAGCTTCTAAATGGTAAACAAATTATGTTTTACTTTTCGTTACGTTCATTTTTTCGTATCATCACTCAAAATTATAAACTCAAAGTCCAATTTTTTCTAACAAAGAAAATGGCTTTCTGATATAATAACTATAAGTTGAGTGACTATCTGAGAAATCTAACTGTTTTTTCTATAGTAGTAAGAATTTTGATTGAATAGATTTGTTTTGGATTGAGACGTAATTGTTGTTTATTACAGTAAGAATTTGATTAGAAGGGTTCAAAGACGGATTAAGCTATTGAAGAACAAGAGAAGTTGCATTATCAAACAATTGAGGGATGATTTATCTGAGTTACTTAGAAATGGACATTACGAAATTGTCATTGATAGGGTAAGTGTAATATGAATTCTTCAAAAAAAAATATATAATTATGGTTAGTATAAAGTTGATATTTTTCATTTTTGTTTGGATTAGCTTAATGTATTCCTCTGTTGATATAGCTAATGTTTGTTCAAGACTCTTTAAAAAAAGTTATGTCACGTGTATCAGATTCTCCAAAAAGTATTTATGAAGAGTCTGAGCAACATAGTTTATAACTGATAGGAAGTTTTCGTATGATTTTCAGGTTGAACAGCTTTCGTTGGATGAACGAAAGGTTGCAGTGTATGATTTACTGGAGAGTTACTGTGAATTTATAATGATCAACCTTCCGTGTATTCGAAAAAACAAGCAAGAAAACACAAACACTTCAATCTAAATTCAATGTTATACAACTATAATGAATAATGATTTTTATGTTTGTTTTGTTTTTCTCAGGGACTGTCCTGATGATATCAATGAAGCAGTGTCAAGTCTCATTTTTGCATCAGCAAGACTCGGTGATGTGCCTGAGCTAGCTGCAATTCGGAAGTTTTTTAGTGAAAGATATGGTCAGAGATTCGAAAAATCTGCACT</genome_strand>
        <mrna_strand>TTTTTTTTAATAAATATCACAAAAGTGTGAATTTGTCACAAGGCTAATCATTTTGTCAGCTTGGAGGAACTCAACAAACATGTTTAATTTACTCTTTGGTTGGAGAAAAGCTTCTAAATG................................................................................................................................................................................................................................TAAGAATTTGATTAGAAGGGTTCAAAGACGGATTAAGCTATTGAAGAACAAGAGAAGTTGCATTATCAAACAATTGAGGGATGATTTATCTGAGTTACTTAGAAATGGACATTACGAAATTGTCATTGATAGG...........................................................................................................................................................................................................................................GTTGAACAGCTTTCGTTGGATGAACGAAAGGTTGCAGTGTATGATTTACTGGAGAGTTACTGTGAATTTATAATGATCAACCTTCCGTGTATTCGAAAAAACAAGCAAGAAAACACAAACACTTCAATCTAAATTCAATGTTATACAACTATAATGAATAATGATTTTTATGTTTGTTTTGTTTTTCTCAGGGACTGTCCTGATGATATCAATGAAGCAGTGTCAAGTCTCATTTTTGCATCAGCAAGACTCGGTGATGTGCCTGAGCTAGCTGCAATTCGGAAGTTTTTTAGTGAAAGATATGGTCAGAGATTCGAAAAATCTGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547368" ref_strand="+" ref_description="SGN-E547368 [TUS-71-D10]">
      <seq>ctcctttctcccctcctccaccgtactccgcgatgggggaatatggaaggcctccgccttatggcggagaatattactatgctgaaaggcgtagaggaggaaatttttgcgttagatgcatttgttgttgctattgcgtcttattcttactcataattattctagcctcgatagccttctatttctacatgtactacaaacctaaaatgccaacgtacgattttcaatcccttgatgttaaggatttcagatatcaacctgactttagtgtgaatgcagatcttatcataacgatgaaagcagataatcccaacacagctatagggtttatttacggggaaggtagctccgttaacgtgacatatagcgattcgaatatttgtacggggaaattacctagttttcatcaaggtcaaaaaaatacaactatattccaaattgaattaacaggtaaaagtacatttggatcagggctatatgaggcatttcaagaaaatgaaaaaaatggtaaaattccattaaaggtaatgattaaggtacctgtgcaaattattttgggagatattaaattaaaacaatttaatgtgtttgcaaatgttacattaactgttcatgatttgaagcctggaaaaaaacctgaggttgaacatagtcaaccaacattcgatgttaaattctgataaaatctgtcttctctgttcctctctggcgttctacgtgtttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="66228" stop="64901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65928" g_stop="65201" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E547368" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65928" e_stop="65201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTCCTCCTCTCCTCCACGGTACTCCGCGATGGGGGAATATGGAAGGCCTCCGCCTTATGGCGGAGAATATTACTATGCAGAAAGGCGTAGAGGAGGAAATTTCTGCGTTAGATGCATTTGTTGTTGCTATTGCGTCCTATTTTTACTCATAATTATTCTAGCCTCGATAGCCTTCTATTTCTACATGTACTACAAACCTAAAATGCCTACGTACGATTTTCAATCCCTTGATGTTAAGGATTTCAGATATCAACCCGACTTCAGTGTGAATGCAGATCTTATCATAACGATGAAAACAGATAATCCCAACACAGCTATAGGGTTTATTTACGGGGAAGGTAGCTCCGTTAACGTGACATATAGCGATTCGAATATTTGTACGGGGAAATTACCTAGTTTTTATCAAGGTCAAAAAAATACAACTATATTCCAAATTGAATTAAAAGGTAAAAGTACATTTGGATCAGGGCTATATGAGGCATTTCAAGAAAATGAAAAAAATGGTAAAATTCCATTAAAGGTAATGATTAAGGTACCTGTGCAAATTATTTTGGGAGATATTAAATTAAAACAATTTAATGTGTTTGCAAATGTTACATTAACTGTTCATGATTTGAAGCCTGGCAAAAAACCTGAGGTTGAACATAGTCAACCAACATTCGATGTTAAATTCTGATAAAATCTATCTTCTCTGTTCTTATCTGGCGTTCTATGTGTTTTTTTT</genome_strand>
        <mrna_strand>CTCCTTTCTCCCCTCCTCCACCGTACTCCGCGATGGGGGAATATGGAAGGCCTCCGCCTTATGGCGGAGAATATTACTATGCTGAAAGGCGTAGAGGAGGAAATTTTTGCGTTAGATGCATTTGTTGTTGCTATTGCGTCTTATTCTTACTCATAATTATTCTAGCCTCGATAGCCTTCTATTTCTACATGTACTACAAACCTAAAATGCCAACGTACGATTTTCAATCCCTTGATGTTAAGGATTTCAGATATCAACCTGACTTTAGTGTGAATGCAGATCTTATCATAACGATGAAAGCAGATAATCCCAACACAGCTATAGGGTTTATTTACGGGGAAGGTAGCTCCGTTAACGTGACATATAGCGATTCGAATATTTGTACGGGGAAATTACCTAGTTTTCATCAAGGTCAAAAAAATACAACTATATTCCAAATTGAATTAACAGGTAAAAGTACATTTGGATCAGGGCTATATGAGGCATTTCAAGAAAATGAAAAAAATGGTAAAATTCCATTAAAGGTAATGATTAAGGTACCTGTGCAAATTATTTTGGGAGATATTAAATTAAAACAATTTAATGTGTTTGCAAATGTTACATTAACTGTTCATGATTTGAAGCCTGGAAAAAAACCTGAGGTTGAACATAGTCAACCAACATTCGATGTTAAATTCTGATAAAATCTGTCTTCTCTGTTCCTCTCTGGCGTTCTACGTGTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362134" ref_strand="+" ref_description="SGN-E362134 [cLPP-11-O2]">
      <seq>tcctttctcccctcctccaccgtactccgcgatgggggaatatggaaggcctccgccttatggcggagaatattactatgctgaaaggcgtagaggaggaaatttttgcgttagatgcatttgttgttgctattgcgtcttattcttactcataattattctagcctcgatagccttctatttctacatgtactacaaacctaaaatgccaacgtacgattttcaatcccttgatgttaaggatttcagatatcaacctgactttagtgtgaatgcagatcttatcataacgatgaaagcagataatcccaacacagctatagggtttatttacggggaaggtagctccgttaacgtgacatatagcgattcgaatatttgtacggggaaattacctagttttcatcaaggtcaaaaaaatacaactatattccaaattgaattaacaggtaaaagtacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="66227" stop="65166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65927" g_stop="65466" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E362134" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65927" e_stop="65466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCCTCCTCTCCTCCACGGTACTCCGCGATGGGGGAATATGGAAGGCCTCCGCCTTATGGCGGAGAATATTACTATGCAGAAAGGCGTAGAGGAGGAAATTTCTGCGTTAGATGCATTTGTTGTTGCTATTGCGTCCTATTTTTACTCATAATTATTCTAGCCTCGATAGCCTTCTATTTCTACATGTACTACAAACCTAAAATGCCTACGTACGATTTTCAATCCCTTGATGTTAAGGATTTCAGATATCAACCCGACTTCAGTGTGAATGCAGATCTTATCATAACGATGAAAACAGATAATCCCAACACAGCTATAGGGTTTATTTACGGGGAAGGTAGCTCCGTTAACGTGACATATAGCGATTCGAATATTTGTACGGGGAAATTACCTAGTTTTTATCAAGGTCAAAAAAATACAACTATATTCCAAATTGAATTAAAAGGTAAAAGTACATT</genome_strand>
        <mrna_strand>TCCTTTCTCCCCTCCTCCACCGTACTCCGCGATGGGGGAATATGGAAGGCCTCCGCCTTATGGCGGAGAATATTACTATGCTGAAAGGCGTAGAGGAGGAAATTTTTGCGTTAGATGCATTTGTTGTTGCTATTGCGTCTTATTCTTACTCATAATTATTCTAGCCTCGATAGCCTTCTATTTCTACATGTACTACAAACCTAAAATGCCAACGTACGATTTTCAATCCCTTGATGTTAAGGATTTCAGATATCAACCTGACTTTAGTGTGAATGCAGATCTTATCATAACGATGAAAGCAGATAATCCCAACACAGCTATAGGGTTTATTTACGGGGAAGGTAGCTCCGTTAACGTGACATATAGCGATTCGAATATTTGTACGGGGAAATTACCTAGTTTTCATCAAGGTCAAAAAAATACAACTATATTCCAAATTGAATTAACAGGTAAAAGTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364075" ref_strand="+" ref_description="SGN-E364075 [cLPP-16-J14]">
      <seq>ttgttattgcgtcctatttttcattgtccttatcatagcggcaatctttttgtattttttcacagtctacgatccgaaagctccaatttacaaatttgaagccctagatgttaaggaattcgggtataatgattccaacatcaatgcagatcttatcataacattgagagctgataatcccaacaaggccataggttttatttacgaggaagctaacaccttcaatcttacatatagtggttcaacaatatgttcaggaaaatttccatcatttcatcacggtcaaaagaatgtgactatgttacaaattgaattaaagggtaaaaatccatttgcaaaaggtctttatgagtcattacaagttagtgaaagccatggaaaagttcctttaacaatattggctaaagtaccttttaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="67795" stop="66778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67495" g_stop="67078" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E364075" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67495" e_stop="67078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTATTGCGTCGTATTTTTCATTGTCCTTGTCATAACGGTAATTTTTTTGTATCTTTTCACAGTCTACGATCCGAAAGCTCCAATTTACAAATTTGAAGCCCTAGATGTTAAGGAATTCGAATATAATGATTCCAACATCAATGCAGATCTTATCATAACGTTGAGAGCTGATAATCCCAACAAGGCCATAGGTTTTATTTACGAGGAAGCTAACACCTTCAATGTTACATATAGTGGTTCAACAATATGTTCAGGAAAATTTCCATCATTTCATCACGGTCAAAAGAATGTAACTATGTTACAAATTGAATTAAAGGGTAAAAATCCATTTGCAAAAAGTCTTTATGAGTCATTACAAGTTAGTGAAAGCCATGGAAAAGTTCCTTTAACAATATTGGCTAAGGTACCCTTTAGA</genome_strand>
        <mrna_strand>TTGTTATTGCGTCCTATTTTTCATTGTCCTTATCATAGCGGCAATCTTTTTGTATTTTTTCACAGTCTACGATCCGAAAGCTCCAATTTACAAATTTGAAGCCCTAGATGTTAAGGAATTCGGGTATAATGATTCCAACATCAATGCAGATCTTATCATAACATTGAGAGCTGATAATCCCAACAAGGCCATAGGTTTTATTTACGAGGAAGCTAACACCTTCAATCTTACATATAGTGGTTCAACAATATGTTCAGGAAAATTTCCATCATTTCATCACGGTCAAAAGAATGTGACTATGTTACAAATTGAATTAAAGGGTAAAAATCCATTTGCAAAAGGTCTTTATGAGTCATTACAAGTTAGTGAAAGCCATGGAAAAGTTCCTTTAACAATATTGGCTAAAGTACCTTTTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362154" ref_strand="+" ref_description="SGN-E362154 [cLPP-11-F3]">
      <seq>ccccgccttatccctatgggggcggggaatattatcctcaagaaaggcgaagaggaggaaatgtttgcgttagatgcatttgttgttgttattgcgtcctatttttcattgtccttatcatagcggcaatctttttgtattttttcacagtctacgatccgaaagctccaatttacaaatttgaagccctagatgttaaggaattcgggtataatgattccaacatcaatgcagatcttatcataacattgagagctgataatcccaacaaggccataggttttatttacgaggaagctaacaccttcaatcttacatatagtggttcaacaatatgttcaggaaaatttccatcatttcatcacggtcaaaagaatgtaactatgttacaaattgaattaaagggtaaaaatccatttgcaaaaggtctttatgagtcattacaagttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="67880" stop="66829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67580" g_stop="67129" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E362154" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67580" e_stop="67129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCGCCTTATCCCTATGGGGGCGGGGAATATTATCCTCAAGAAAGGCGAAGAGGAGGAAATGTTTGTGTTAGATGCATTTGTTGTTGTTATTGCGTCGTATTTTTCATTGTCCTTGTCATAACGGTAATTTTTTTGTATCTTTTCACAGTCTACGATCCGAAAGCTCCAATTTACAAATTTGAAGCCCTAGATGTTAAGGAATTCGAATATAATGATTCCAACATCAATGCAGATCTTATCATAACGTTGAGAGCTGATAATCCCAACAAGGCCATAGGTTTTATTTACGAGGAAGCTAACACCTTCAATGTTACATATAGTGGTTCAACAATATGTTCAGGAAAATTTCCATCATTTCATCACGGTCAAAAGAATGTAACTATGTTACAAATTGAATTAAAGGGTAAAAATCCATTTGCAAAAAGTCTTTATGAGTCATTACAAGTTAGT</genome_strand>
        <mrna_strand>CCCCGCCTTATCCCTATGGGGGCGGGGAATATTATCCTCAAGAAAGGCGAAGAGGAGGAAATGTTTGCGTTAGATGCATTTGTTGTTGTTATTGCGTCCTATTTTTCATTGTCCTTATCATAGCGGCAATCTTTTTGTATTTTTTCACAGTCTACGATCCGAAAGCTCCAATTTACAAATTTGAAGCCCTAGATGTTAAGGAATTCGGGTATAATGATTCCAACATCAATGCAGATCTTATCATAACATTGAGAGCTGATAATCCCAACAAGGCCATAGGTTTTATTTACGAGGAAGCTAACACCTTCAATCTTACATATAGTGGTTCAACAATATGTTCAGGAAAATTTCCATCATTTCATCACGGTCAAAAGAATGTAACTATGTTACAAATTGAATTAAAGGGTAAAAATCCATTTGCAAAAGGTCTTTATGAGTCATTACAAGTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363114" ref_strand="+" ref_description="SGN-E363114 [cLPP-19-O21]">
      <seq>aaaagtggtgggcctctatccataaggagataggtccaccaccaccaaaaagaaaaaaacctagattattcataatttaatttcctcctcctcgtcctcgttctcatcctcatcctcattctcgtcttcctatgcatcgtccaccaccctacgggatggcaggtgatggaaggcccccgccttatccctatgggggcggggaatattatcctcaagaaaggcgaagaggaggaaatgtttgcgttagatgcatttgttgttgttattgcgtcctatttttcattgtccttatcatagcggcaatctttttgtattttttcacagtctacgatccgaaagctccaatttacaaatttgaagccctagatgttaaggaattcgggtataatgattccaacatcaatgcagatcttatcataacattgagagctgataatcccaacaaggccataggttttatttacgaggaagctaacaccttcaatcttacatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="68043" stop="66960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67743" g_stop="67260" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E363114" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67743" e_stop="67260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTGGTGGTCCTCTATCCATAAGGAGATAGGTCC---ACCACCAAAAA-AAAATCCCCTAGATTATTC-TAATTTAATTTCCTCCTCCTCGTTCTCGTTCTCATCCTCAT--TC-T---CGTCTTTCTATGCATCGTCCACCACCCTATGGGATGGCAGGTGATGGAAGGCCCCCGCCTTATCCCTATGGGGGCGGGGAATATTATCCTCAAGAAAGGCGAAGAGGAGGAAATGTTTGTGTTAGATGCATTTGTTGTTGTTATTGCGTCGTATTTTTCATTGTCCTTGTCATAACGGTAATTTTTTTGTATCTTTTCACAGTCTACGATCCGAAAGCTCCAATTTACAAATTTGAAGCCCTAGATGTTAAGGAATTCGAATATAATGATTCCAACATCAATGCAGATCTTATCATAACGTTGAGAGCTGATAATCCCAACAAGGCCATAGGTTTTATTTACGAGGAAGCTAACACCTTCAATGTTACATATA</genome_strand>
        <mrna_strand>AAAAGTGGTGGGCCTCTATCCATAAGGAGATAGGTCCACCACCACCAAAAAGAAAAAAACCTAGATTATTCATAATTTAATTTCCTCCTCCTCGTCCTCGTTCTCATCCTCATCCTCATTCTCGTCTTCCTATGCATCGTCCACCACCCTACGGGATGGCAGGTGATGGAAGGCCCCCGCCTTATCCCTATGGGGGCGGGGAATATTATCCTCAAGAAAGGCGAAGAGGAGGAAATGTTTGCGTTAGATGCATTTGTTGTTGTTATTGCGTCCTATTTTTCATTGTCCTTATCATAGCGGCAATCTTTTTGTATTTTTTCACAGTCTACGATCCGAAAGCTCCAATTTACAAATTTGAAGCCCTAGATGTTAAGGAATTCGGGTATAATGATTCCAACATCAATGCAGATCTTATCATAACATTGAGAGCTGATAATCCCAACAAGGCCATAGGTTTTATTTACGAGGAAGCTAACACCTTCAATCTTACATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361417" ref_strand="+" ref_description="SGN-E361417 [cLPP-6-J17]">
      <seq>aaaaagaaaaaaacctagattattcataatttaatttcctcctcctcgtcctcgttctcatcctcatcctcattctcgtcttcctatgcatcgtccaccaccctacgggatggcaggtgatggaaggcccccgccttatccctatgggggcggggaatattatcctcaagaaaggcgaagaggaggaaatgtttgcgttagatgcatttgttgttgttattgcgtcctatttttcattgtccttatcatagcggcaatctttttgtattttttcacagtctacgatccgaaagctccaatttacaaatttgaagccctagatgttaaggaattcgggtataatgattccaacatcaatgcagatcttatcataacattgagagctgataatcccaacaaggccataggttttatttacgaggaagctaacaccttcaatcttacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="67966" stop="66962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67666" g_stop="67262" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="447" r_length="405" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E361417" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67666" e_stop="67262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCTCCTCGTTCTCGTTCTCATCCTCATTCTCGTCTTTCTATGCATCGTCCACCACCCTATGGGATGGCAGGTGATGGAAGGCCCCCGCCTTATCCCTATGGGGGCGGGGAATATTATCCTCAAGAAAGGCGAAGAGGAGGAAATGTTTGTGTTAGATGCATTTGTTGTTGTTATTGCGTCGTATTTTTCATTGTCCTTGTCATAACGGTAATTTTTTTGTATCTTTTCACAGTCTACGATCCGAAAGCTCCAATTTACAAATTTGAAGCCCTAGATGTTAAGGAATTCGAATATAATGATTCCAACATCAATGCAGATCTTATCATAACGTTGAGAGCTGATAATCCCAACAAGGCCATAGGTTTTATTTACGAGGAAGCTAACACCTTCAATGTTACATA</genome_strand>
        <mrna_strand>TCCTCGTCCTCGTTCTCATCCTCATCCTCATTCTCGTCTTCCTATGCATCGTCCACCACCCTACGGGATGGCAGGTGATGGAAGGCCCCCGCCTTATCCCTATGGGGGCGGGGAATATTATCCTCAAGAAAGGCGAAGAGGAGGAAATGTTTGCGTTAGATGCATTTGTTGTTGTTATTGCGTCCTATTTTTCATTGTCCTTATCATAGCGGCAATCTTTTTGTATTTTTTCACAGTCTACGATCCGAAAGCTCCAATTTACAAATTTGAAGCCCTAGATGTTAAGGAATTCGGGTATAATGATTCCAACATCAATGCAGATCTTATCATAACATTGAGAGCTGATAATCCCAACAAGGCCATAGGTTTTATTTACGAGGAAGCTAACACCTTCAATCTTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361285" ref_strand="+" ref_description="SGN-E361285 [cLPP-15-I19]">
      <seq>ctaaaaccaaaaaaggaaaaagtaaaaaataaaagtggtggtcctctatccataaggagataggtccaccaccaccaaaaagaaaaaaacctagattattcataatttaatttcctcctcctcgtcctcgttctcatcctcatcctcattctcgtcttcctatgcatcgtccaccaccctacgggatggcaggtgatggaaggcccccgccttatccctatgggggcggggaatattatcctcaagaaaggcgaaaaggaggaaatgtttgcgttagatgcatttgttgttgttattgcgtcctatttttcattgtccttatcatagcggcaatctttttgtattttttcacagtctacgatccgaaagctccaatttacaaatttgaagccctagatgttaaggaattcgggtataatgattccaacatcaatgcagatcttatcataacattgagagctgataatcccaacaaggccatagggtttattttacgaggaagctaacacctttaatcttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="68074" stop="66963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67774" g_stop="67263" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E361285" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67774" e_stop="67263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAACCAAAAAAAGGAAAAAGGAAAAAATAAAAGTGGTGGTCCTCTATCCATAAGGAGATAGGT---CCACCACCAAAAA-AAAATCCCCTAGATTATTC-TAATTTAATTTCCTCCTCCTCGTTCTCG---T--T-CTCATCCTCATTCTCGTCTTTCTATGCATCGTCCACCACCCTATGGGATGGCAGGTGATGGAAGGCCCCCGCCTTATCCCTATGGGGGCGGGGAATATTATCCTCAAGAAAGGCGAAGAGGAGGAAATGTTTGTGTTAGATGCATTTGTTGTTGTTATTGCGTCGTATTTTTCATTGTCCTTGTCATAACGGTAATTTTTTTGTATCTTTTCACAGTCTACGATCCGAAAGCTCCAATTTACAAATTTGAAGCCCTAGATGTTAAGGAATTCGAATATAATGATTCCAACATCAATGCAGATCTTATCATAACGTTGAGAGCTGATAATCCCAACAAGGCCATAGGTTTTA-TTTACGAGGAAGCTAACACCTTCAATGTTACAT</genome_strand>
        <mrna_strand>CTAAAACC-AAAAAAGGAAAAAGTAAAAAATAAAAGTGGTGGTCCTCTATCCATAAGGAGATAGGTCCACCACCACCAAAAAGAAAAAAACCTAGATTATTCATAATTTAATTTCCTCCTCCTCGTCCTCGTTCTCATCCTCATCCTCATTCTCGTCTTCCTATGCATCGTCCACCACCCTACGGGATGGCAGGTGATGGAAGGCCCCCGCCTTATCCCTATGGGGGCGGGGAATATTATCCTCAAGAAAGGCGAAAAGGAGGAAATGTTTGCGTTAGATGCATTTGTTGTTGTTATTGCGTCCTATTTTTCATTGTCCTTATCATAGCGGCAATCTTTTTGTATTTTTTCACAGTCTACGATCCGAAAGCTCCAATTTACAAATTTGAAGCCCTAGATGTTAAGGAATTCGGGTATAATGATTCCAACATCAATGCAGATCTTATCATAACATTGAGAGCTGATAATCCCAACAAGGCCATAGGGTTTATTTTACGAGGAAGCTAACACCTTTAATCTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303699" ref_strand="+" ref_description="SGN-E303699 [cLEY-7-C7]">
      <seq>acactttttagtgttgctgattcttggctaaagcagttgggtgtccagcaccacgactttaactatttcatgggtagtcgtcgtggctaatcacatctcaaatgaatgaattcgcgctttataaaaccccaccaacggggctgagtaataactggagttcctttcattaaaacataggctctctgaggtgtttttggtttgttgctttcggtagcatgaacagccttagaactccctcctgtataaaggcattagtgttttacgcgttgttctccgaatccttagcttgagctttctgtcacttgtttttttttgtatgtatagggagaggactaattgtgtaggacttcatctttacatgactcttatgatgacccctagtactttgtgagcaatactttgctccatcttttgtataaattttgaagtaccttttttggtgtttcatctgtgccttttccttgtaatatgttcatgtaaatagttcatctttcaatagtaaaagatttcatgtacaagtgcacaaaaaaaaagaaaaagaaaaagagttgttgtgttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="79520" stop="78359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79220" g_stop="78651" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E303699" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79220" e_stop="78651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTTTTAGTGTTGCTGATTCTTGGCTAAAGCAGTTGGGTGTCCAGCACCACGACTTTAACTATTTCATGGGTAGTCGTCGTGGCTAATCACATCTCAAATGAATGAATTCGCGCTTTATAAAACCCCACCAACGGGGCTGAGTAATAACTGGAGTTCCTTTCATTAAAACATAGGCTCTCTGAGGTGTTTTTGGTTTGTTGCTTTCGGTAGCATGAACAGCCTTAGAACTCCCTCCTGTATAAAGGCATTAGTGTTTTACGCGTTGTTCTCCGAATCCTTAGCTTGAGCTTTCTGTCACTTGTTTTTTTTTGTATGTATAGGGAGAGGACTAATTGTGTAGGACTTCATCTTTACATGACTCTTATGATGACCCCTAGTACTTTGTGAGCAATACTTTGCTCCATCTTTTGTATAAATTTTGAAGTACCTTTTTTGGTGTTTCATCTGTGCCTTTTCCTTGTAATATGTTCATGTAAATAGTTCATCTTTCAATAGTAAAAGATTTCATGTACAAGTGCACAAAAAAAAAGAAAAAGAAAAAGAGTTGTTGTGTTGACATTGAATCT</genome_strand>
        <mrna_strand>ACACTTTTTAGTGTTGCTGATTCTTGGCTAAAGCAGTTGGGTGTCCAGCACCACGACTTTAACTATTTCATGGGTAGTCGTCGTGGCTAATCACATCTCAAATGAATGAATTCGCGCTTTATAAAACCCCACCAACGGGGCTGAGTAATAACTGGAGTTCCTTTCATTAAAACATAGGCTCTCTGAGGTGTTTTTGGTTTGTTGCTTTCGGTAGCATGAACAGCCTTAGAACTCCCTCCTGTATAAAGGCATTAGTGTTTTACGCGTTGTTCTCCGAATCCTTAGCTTGAGCTTTCTGTCACTTGTTTTTTTTTGTATGTATAGGGAGAGGACTAATTGTGTAGGACTTCATCTTTACATGACTCTTATGATGACCCCTAGTACTTTGTGAGCAATACTTTGCTCCATCTTTTGTATAAATTTTGAAGTACCTTTTTTGGTGTTTCATCTGTGCCTTTTCCTTGTAATATGTTCATGTAAATAGTTCATCTTTCAATAGTAAAAGATTTCATGTACAAGTGCACAAAAAAAAAGAAAAAGAAAAAGAGTTGTTGTGTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279066" ref_strand="+" ref_description="SGN-E279066 [cLEL-4-A8](-)">
      <seq>aggagggagttctaaggctgttcatgctaccgaaagcaacaaacccannnacaccttcaagagcctatgttttaatgaaaggaactcccagttattactcagccccgttggtggggttttataaagcgcgaattcattcatttgagatgtgattagccacgacgactacccatgaaatagttaaagtcgtggtgctggacacccaactgctttagccaagaatcagcaacactaaaaagtgttgacagcctctcttggtccttcccactcctgtctgaaagccacacatctccctgcattttgtaagtgcccaagccgaaaggcgcaagggggatactttctccttcctttcgttttcttttgccattctccatgtcatcatcactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="+" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="78681" stop="79662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78981" g_stop="79364" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="+" ref_id="SGN-E279066" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78981" e_stop="79364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGGGAGTTCTAAGGCTGTTCATGCTACCGAAAGCAACAAA-CCAAAAACACCTCAGAGAGCCTATGTTTTAATGAAAGGAACT-CCAGTTATTACTCAGCCCCGTTGGTGGGGTTTTATAAAGCGCGAATTCATTCATTTGAGATGTGATTAGCCACGACGACTACCCATGAAATAGTTAAAGTCGTGGTGCTGGACACCCAACTGCTTTAGCCAAGAATCAGCAACACTAAAAAGTGTTGACAGCCTCTCTTGGTCCTTCCCACTCCTGTCTGAAAGCCACACATCTCCCTGCATTTTGTAAGTGCCCAAGCCGAAAGGCGCAAGGGGGATACTTTCTCCTTCCTTTCGTTTTCTTTTGCCATTCTCCATGTCATCATCAAG</genome_strand>
        <mrna_strand>AGGAGGGAGTTCTAAGGCTGTTCATGCTACCGAAAGCAACAAACCCANNNACACCTTCAAGAGCCTATGTTTTAATGAAAGGAACTCCCAGTTATTACTCAGCCCCGTTGGTGGGGTTTTATAAAGCGCGAATTCATTCATTTGAGATGTGATTAGCCACGACGACTACCCATGAAATAGTTAAAGTCGTGGTGCTGGACACCCAACTGCTTTAGCCAAGAATCAGCAACACTAAAAAGTGTTGACAGCCTCTCTTGGTCCTTCCCACTCCTGTCTGAAAGCCACACATCTCCCTGCATTTTGTAAGTGCCCAAGCCGAAAGGCGCAAGGGGGATACTTTCTCCTTCCTTTCGTTTTCTTTTGCCATTCTCCATGTCATCATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250764" ref_strand="+" ref_description="SGN-E250764 [cLEG-7-D22]">
      <seq>tccctttgatggacaagattagtggtttcgctgaaagataccctggattaatgtcattgagaagtgtagacctttcaccggctagttggatgtcagttgcttggtatccgatatatcacattcctatgggaagaactattaaagacttgtcagcatgctttctcacattccacacactttcttcttcttttcaagatatggaccttgatgatgacatggagaatggcaaaagaaaacgaaaggaaggagaaagtatcccccttgcgcctttcggcttgggcacttacaaaatgcagggagatgtgtggctttcagacaggagtgggaaggaccaagagaggctgtcaacactttttagtgttgctgattcttggctaaagcagttgggtgtccagcaccacgactttaactatttcatgggtagtcgtcgtggctaatcacatctcaaatgaatgaattcgcgctttataaaaccccaccaacggggctgagtaataactggagttcctttcattaaaacataggctctctgaggtgtttttggtttgttgctttcggtagcatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="80214" stop="78701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79994" g_stop="79978" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.647"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79977" i_stop="79904" i_length="74">
            <donor d_prob="0.918" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79903" g_stop="79818" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="103" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79817" i_stop="79555" i_length="263">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79554" g_stop="79463" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="195" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79462" i_stop="79373" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79372" g_stop="79001" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="567" r_length="372" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E250764" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79994" e_stop="79978"/>
          <exon e_start="79903" e_stop="79818"/>
          <exon e_start="79554" e_stop="79463"/>
          <exon e_start="79372" e_stop="79001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTTGAAGCATGTGGCTTGAATTTTTAGTATATATTGGTTTGTTTTTCGAGTTCTTTGATTCAAAAATCGAATACATTTTGCTTGCAGATTAGTGGTTTCGCTGAAAGATACCCTGGATTAATGTCATTGAGAAGTGTAGACCTTTCACCGGCTAGTTGGATGTCAGTTGCTTGGTATGCTAATTCTCTACTTGTTTCCATATGATCATGGGAGTTGATGGTTTGTTGATAGTAGATTTTGTTAAGTTAATGAAACGTGTACGCGTAGAATTGTTGTGTTAGATTGGGATGTGTTAAAAAGGTTTACTTGATGAGTGTTGGATTGGATCTTGTGTGTTCGTTGTAATGTTTACTTTTGGTAATGCTGACTTGCTCGTTTAGTAAGGGGAACAAAAAGGAGGAGTTTTTTCACTAAGTTTTTTCGAATTGAATAACAGGTATCCGATATATCACATTCCTATGGGAAGAACTATTAAAGACTTGTCAGCATGCTTTCTCACATTCCACACACTTTCTTCTTCTTTTCAAGGTATCATTCAATCTGTCTTTTGATTTTTTGAACTTTTGAATATACCGTTGCTTTTCCCTTTACACCGAACCTTTTGGTATAATGGTGTAGATATGGACCTTGATGATGACATGGAGAATGGCAAAAGAAAACGAAAGGAAGGAGAAAGTATCCCCCTTGCGCCTTTCGGCTTGGGCACTTACAAAATGCAGGGAGATGTGTGGCTTTCAGACAGGAGTGGGAAGGACCAAGAGAGGCTGTCAACACTTTTTAGTGTTGCTGATTCTTGGCTAAAGCAGTTGGGTGTCCAGCACCACGACTTTAACTATTTCATGGGTAGTCGTCGTGGCTAATCACATCTCAAATGAATGAATTCGCGCTTTATAAAACCCCACCAACGGGGCTGAGTAATAACTGGAGTTCCTTTCATTAAAACATAGGCTCTCTGAGGTGTTTTTGGTTTGTTGCTTTCGGTAGCATGAA</genome_strand>
        <mrna_strand>TCCCTTTGATGGACAAG..........................................................................ATTAGTGGTTTCGCTGAAAGATACCCTGGATTAATGTCATTGAGAAGTGTAGACCTTTCACCGGCTAGTTGGATGTCAGTTGCTTG.......................................................................................................................................................................................................................................................................GTATCCGATATATCACATTCCTATGGGAAGAACTATTAAAGACTTGTCAGCATGCTTTCTCACATTCCACACACTTTCTTCTTCTTTTCAAG..........................................................................................ATATGGACCTTGATGATGACATGGAGAATGGCAAAAGAAAACGAAAGGAAGGAGAAAGTATCCCCCTTGCGCCTTTCGGCTTGGGCACTTACAAAATGCAGGGAGATGTGTGGCTTTCAGACAGGAGTGGGAAGGACCAAGAGAGGCTGTCAACACTTTTTAGTGTTGCTGATTCTTGGCTAAAGCAGTTGGGTGTCCAGCACCACGACTTTAACTATTTCATGGGTAGTCGTCGTGGCTAATCACATCTCAAATGAATGAATTCGCGCTTTATAAAACCCCACCAACGGGGCTGAGTAATAACTGGAGTTCCTTTCATTAAAACATAGGCTCTCTGAGGTGTTTTTGGTTTGTTGCTTTCGGTAGCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202460" ref_strand="+" ref_description="SGN-E202460 [cLEC-6-G2]">
      <seq>agaatcaagggattcatcgtttagcgattcgtttactgatgagagtgaaagtgagaagttgtcaagatgggatggatgttcatctgaagaacgtgatagtctttggcatatgaatgatcgatggggttatctctatttccagcactttgagagatcaactccttatggaagagtccctttgatggacaagattagtggtttcgctcaaagataccctggattaatgtcattgagaagtgtacacctttcaccggctcgttggatgtcagctgcttggtatccgatatatcacattcctatgggaagaactattacagacttgtcagcatgctttctcacattccacacactttcttcttcttttccagatatagaccttgatgatgacatggctaatggcgaatgaaaaccaaacgaacgagaaagtatcccccttgcgcctttcggcttgggcacttacacaatgcagggagatgtgtggctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="80763" stop="78955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80463" g_stop="80274" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80273" i_stop="79904" i_length="370">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79903" g_stop="79818" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="276" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79817" i_stop="79555" i_length="263">
            <donor d_prob="0.739" d_score="0.94"/>
            <acceptor a_prob="0.695" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79554" g_stop="79463" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="368" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79462" i_stop="79373" i_length="90">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79372" g_stop="79255" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="486" r_length="118" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E202460" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80463" e_stop="80274"/>
          <exon e_start="79903" e_stop="79818"/>
          <exon e_start="79554" e_stop="79463"/>
          <exon e_start="79372" e_stop="79255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCAAGGGATTCATCGTTTAGCGATTCGTTTAGTGATGAGAGTGAAAGTGAGAAGTTGTCAAGATGGGATGGATGTTCATCTGAAGAAGGTGATAGTCTTTGGCATATGAATGATAGATGGGGTTATCTCTATTTTCAGTACTTTGAGAGATCAACTCCTTATGGAAGAGTCCCTTTGATGGACAAGGTATCCTCTTTTTACCCCTTTTTTTTGCCTCTTTAGCTGCAAATTCCCCTTGTTGAAAGTCTTCCTTTTGACATACTGGTAGCTGGTGCTTTAAGGAAATGTATATAGTATAGAATCATATAAGTTTGGTTATGTATCTTTACTTGTGATTTTGTGATCATTAATCAACATATCATTTATAGTTTTACCCTTCTGGAATCAATGGTGACATGTTTAGTACAGGATTGTTCTTTATTCTGTTTCTTGGCGTAGCGTAAGCTGTCGTTATTGATATGAGATTCCATTTGAAGCATGTGGCTTGAATTTTTAGTATATATTGGTTTGTTTTTCGAGTTCTTTGATTCAAAAATCGAATACATTTTGCTTGCAGATTAGTGGTTTCGCTGAAAGATACCCTGGATTAATGTCATTGAGAAGTGTAGACCTTTCACCGGCTAGTTGGATGTCAGTTGCTTGGTATGCTAATTCTCTACTTGTTTCCATATGATCATGGGAGTTGATGGTTTGTTGATAGTAGATTTTGTTAAGTTAATGAAACGTGTACGCGTAGAATTGTTGTGTTAGATTGGGATGTGTTAAAAAGGTTTACTTGATGAGTGTTGGATTGGATCTTGTGTGTTCGTTGTAATGTTTACTTTTGGTAATGCTGACTTGCTCGTTTAGTAAGGGGAACAAAAAGGAGGAGTTTTTTCACTAAGTTTTTTCGAATTGAATAACAGGTATCCGATATATCACATTCCTATGGGAAGAACTATTAAAGACTTGTCAGCATGCTTTCTCACATTCCACACACTTTCTTCTTCTTTTCAAGGTATCATTCAATCTGTCTTTTGATTTTTTGAACTTTTGAATATACCGTTGCTTTTCCCTTTACACCGAACCTTTTGGTATAATGGTGTAGATATGGACCTTGATGATGACATGGAGAATGGCAAAAGAAAACGAAAGGAAGGAGAAAGTATCCCCCTTGCGCCTTTCGGCTTGGGCACTTACAAAATGCAGGGAGATGTGTGGCTTTC</genome_strand>
        <mrna_strand>AGAATCAAGGGATTCATCGTTTAGCGATTCGTTTACTGATGAGAGTGAAAGTGAGAAGTTGTCAAGATGGGATGGATGTTCATCTGAAGAACGTGATAGTCTTTGGCATATGAATGATCGATGGGGTTATCTCTATTTCCAGCACTTTGAGAGATCAACTCCTTATGGAAGAGTCCCTTTGATGGACAAG..................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGTTTCGCTCAAAGATACCCTGGATTAATGTCATTGAGAAGTGTACACCTTTCACCGGCTCGTTGGATGTCAGCTGCTTG.......................................................................................................................................................................................................................................................................GTATCCGATATATCACATTCCTATGGGAAGAACTATTACAGACTTGTCAGCATGCTTTCTCACATTCCACACACTTTCTTCTTCTTTTCCAG..........................................................................................ATATAGACCTTGATGATGACATGGCTAATGGCGAATGAAAACCAAACGAACGAGAAAGTATCCCCCTTGCGCCTTTCGGCTTGGGCACTTACACAATGCAGGGAGATGTGTGGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555394" ref_strand="+" ref_description="SGN-E555394 [cTSC-2-L4]">
      <seq>gagaaacagtttcttcaatctctttctctctctttctctctgtgtgtttgtggtttttgaataatcatgtcaatggaaaaggggtcattacaatcaaaccttgattgtttcttggaatgcacaacaccattagtcccttcacagtttttgcctcagagtgagattagaaacctaaataggctatggcatccatgggaaagagaaaaagttgaatactttactttgggtgatctttggaattgttatgatgaatggagtgcttatggtgctggagttcctattaaaacagattcagcagaaacattagtacaatattatgttccttatctttctgctattcaaatctttatcagcagatcatctgttaattttctcagggaagagacagaatcaagggattcatcgtttagcgattcgtttagtgatgagagtgaaagtgagaagttgtcaagatgggatggatgttcatctgaagaaggtgatagtctttggcatatgaatgatagatggggttatctctattttcagtactttgagagatcaactccttatggaagagtccctttgatggacaagattagtggtttcgctgaaagataccctggattaatgtcattgagaagtgtagacctttcaccggctagttggatgtcagttgcttggtatccgatatatcacattcctatgggaagaactattaaagacttgtcagcatgctttctcacattccacacactttcttcttcttttcaagatatggaccttgatgatgacatggaaaatggcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="81376" stop="79038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81076" g_stop="80921" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80920" i_stop="80834" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80833" g_stop="80613" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="377" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80612" i_stop="80473" i_length="140">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80472" g_stop="80274" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="576" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80273" i_stop="79904" i_length="370">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79903" g_stop="79818" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="662" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79817" i_stop="79555" i_length="263">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79554" g_stop="79463" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="754" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79462" i_stop="79373" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79372" g_stop="79338" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="755" r_stop="789" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E555394" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81076" e_stop="80921"/>
          <exon e_start="80833" e_stop="80613"/>
          <exon e_start="80472" e_stop="80274"/>
          <exon e_start="79903" e_stop="79818"/>
          <exon e_start="79554" e_stop="79463"/>
          <exon e_start="79372" e_stop="79338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAACAGTTTCTTCAATCTCTTTCTCTCTCTTTCTCTCTGTGTGTTTGTGGTTTTTGAATAATCATGTCAATGGAAAAGGGGTCATTACAATCAAACCTTGATTGTTTCTTGGAATGCACAACACCATTAGTCCCTTCACAGTTTTTGCCTCAGGTTTGTTTATTTCCTTTTTGGGTTTTTTCTTTTTTTTTCTTTACCCCCAAATTTGATTTTGATGAATGTGATTTGTGGTATGTGCAGAGTGAGATTAGAAACCTAAATAGGCTATGGCATCCATGGGAAAGAGAAAAAGTTGAATACTTTACTTTGGGTGATCTTTGGAATTGTTATGATGAATGGAGTGCTTATGGTGCTGGAGTTCCTATTAAAACAGATTCAGCAGAAACATTAGTACAATATTATGTTCCTTATCTTTCTGCTATTCAAATCTTTATCAGCAGATCATCTGTTAATTTTCTCAGGTAAAAATTTCAATTTCATCATTATTTATTTTGTGGGTAAATCTTGAATTTTTGTGCATTAAACATCTCGTGTTCACAGAGGATCATTTTAATTGTTAATTATGAAGATAAATGAGGGTTTGTGCTGCATTTTTTAATAGGGAAGAGACAGAATCAAGGGATTCATCGTTTAGCGATTCGTTTAGTGATGAGAGTGAAAGTGAGAAGTTGTCAAGATGGGATGGATGTTCATCTGAAGAAGGTGATAGTCTTTGGCATATGAATGATAGATGGGGTTATCTCTATTTTCAGTACTTTGAGAGATCAACTCCTTATGGAAGAGTCCCTTTGATGGACAAGGTATCCTCTTTTTACCCCTTTTTTTTGCCTCTTTAGCTGCAAATTCCCCTTGTTGAAAGTCTTCCTTTTGACATACTGGTAGCTGGTGCTTTAAGGAAATGTATATAGTATAGAATCATATAAGTTTGGTTATGTATCTTTACTTGTGATTTTGTGATCATTAATCAACATATCATTTATAGTTTTACCCTTCTGGAATCAATGGTGACATGTTTAGTACAGGATTGTTCTTTATTCTGTTTCTTGGCGTAGCGTAAGCTGTCGTTATTGATATGAGATTCCATTTGAAGCATGTGGCTTGAATTTTTAGTATATATTGGTTTGTTTTTCGAGTTCTTTGATTCAAAAATCGAATACATTTTGCTTGCAGATTAGTGGTTTCGCTGAAAGATACCCTGGATTAATGTCATTGAGAAGTGTAGACCTTTCACCGGCTAGTTGGATGTCAGTTGCTTGGTATGCTAATTCTCTACTTGTTTCCATATGATCATGGGAGTTGATGGTTTGTTGATAGTAGATTTTGTTAAGTTAATGAAACGTGTACGCGTAGAATTGTTGTGTTAGATTGGGATGTGTTAAAAAGGTTTACTTGATGAGTGTTGGATTGGATCTTGTGTGTTCGTTGTAATGTTTACTTTTGGTAATGCTGACTTGCTCGTTTAGTAAGGGGAACAAAAAGGAGGAGTTTTTTCACTAAGTTTTTTCGAATTGAATAACAGGTATCCGATATATCACATTCCTATGGGAAGAACTATTAAAGACTTGTCAGCATGCTTTCTCACATTCCACACACTTTCTTCTTCTTTTCAAGGTATCATTCAATCTGTCTTTTGATTTTTTGAACTTTTGAATATACCGTTGCTTTTCCCTTTACACCGAACCTTTTGGTATAATGGTGTAGATATGGACCTTGATGATGACATGGAGAATGGCAAA</genome_strand>
        <mrna_strand>GAGAAACAGTTTCTTCAATCTCTTTCTCTCTCTTTCTCTCTGTGTGTTTGTGGTTTTTGAATAATCATGTCAATGGAAAAGGGGTCATTACAATCAAACCTTGATTGTTTCTTGGAATGCACAACACCATTAGTCCCTTCACAGTTTTTGCCTCAG.......................................................................................AGTGAGATTAGAAACCTAAATAGGCTATGGCATCCATGGGAAAGAGAAAAAGTTGAATACTTTACTTTGGGTGATCTTTGGAATTGTTATGATGAATGGAGTGCTTATGGTGCTGGAGTTCCTATTAAAACAGATTCAGCAGAAACATTAGTACAATATTATGTTCCTTATCTTTCTGCTATTCAAATCTTTATCAGCAGATCATCTGTTAATTTTCTCAG............................................................................................................................................GGAAGAGACAGAATCAAGGGATTCATCGTTTAGCGATTCGTTTAGTGATGAGAGTGAAAGTGAGAAGTTGTCAAGATGGGATGGATGTTCATCTGAAGAAGGTGATAGTCTTTGGCATATGAATGATAGATGGGGTTATCTCTATTTTCAGTACTTTGAGAGATCAACTCCTTATGGAAGAGTCCCTTTGATGGACAAG..................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGTTTCGCTGAAAGATACCCTGGATTAATGTCATTGAGAAGTGTAGACCTTTCACCGGCTAGTTGGATGTCAGTTGCTTG.......................................................................................................................................................................................................................................................................GTATCCGATATATCACATTCCTATGGGAAGAACTATTAAAGACTTGTCAGCATGCTTTCTCACATTCCACACACTTTCTTCTTCTTTTCAAG..........................................................................................ATATGGACCTTGATGATGACATGGAAAATGGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231705" ref_strand="+" ref_description="SGN-E231705 [cLED-4-F17]">
      <seq>aaacattagtacaatattatgttccttatctttctgctattcaaatctttatcagcagatcatctgttaattttctcagggaagagacagaatcaagggattcatcgtttagcgattcgtttagtgatgagagtgaaagtgagaagttgtcaagatgggatggatgttcatctgaagaaggtgatagtctttggcatatgaatgatagatggggttatctctattttcagtactttgagagatcaactccttatggaagagtccctttgatggacaagattagtggtttcgctgaaagataccctggattaatgtcattgagaagtgtagacctttcaccggctagttggatgtcagttgcttggtatccgatatatcacattcctatgggaagaactattaaagacttgtcagcatgctttctcacattccacacactttcttcttcttttcaagatatggaccttgatgatgacatggagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="80991" stop="79044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80691" g_stop="80613" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80612" i_stop="80473" i_length="140">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80472" g_stop="80274" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="278" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80273" i_stop="79904" i_length="370">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79903" g_stop="79818" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="364" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79817" i_stop="79555" i_length="263">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79554" g_stop="79463" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="456" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79462" i_stop="79373" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79372" g_stop="79344" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="485" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E231705" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80691" e_stop="80613"/>
          <exon e_start="80472" e_stop="80274"/>
          <exon e_start="79903" e_stop="79818"/>
          <exon e_start="79554" e_stop="79463"/>
          <exon e_start="79372" e_stop="79344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATTAGTACAATATTATGTTCCTTATCTTTCTGCTATTCAAATCTTTATCAGCAGATCATCTGTTAATTTTCTCAGGTAAAAATTTCAATTTCATCATTATTTATTTTGTGGGTAAATCTTGAATTTTTGTGCATTAAACATCTCGTGTTCACAGAGGATCATTTTAATTGTTAATTATGAAGATAAATGAGGGTTTGTGCTGCATTTTTTAATAGGGAAGAGACAGAATCAAGGGATTCATCGTTTAGCGATTCGTTTAGTGATGAGAGTGAAAGTGAGAAGTTGTCAAGATGGGATGGATGTTCATCTGAAGAAGGTGATAGTCTTTGGCATATGAATGATAGATGGGGTTATCTCTATTTTCAGTACTTTGAGAGATCAACTCCTTATGGAAGAGTCCCTTTGATGGACAAGGTATCCTCTTTTTACCCCTTTTTTTTGCCTCTTTAGCTGCAAATTCCCCTTGTTGAAAGTCTTCCTTTTGACATACTGGTAGCTGGTGCTTTAAGGAAATGTATATAGTATAGAATCATATAAGTTTGGTTATGTATCTTTACTTGTGATTTTGTGATCATTAATCAACATATCATTTATAGTTTTACCCTTCTGGAATCAATGGTGACATGTTTAGTACAGGATTGTTCTTTATTCTGTTTCTTGGCGTAGCGTAAGCTGTCGTTATTGATATGAGATTCCATTTGAAGCATGTGGCTTGAATTTTTAGTATATATTGGTTTGTTTTTCGAGTTCTTTGATTCAAAAATCGAATACATTTTGCTTGCAGATTAGTGGTTTCGCTGAAAGATACCCTGGATTAATGTCATTGAGAAGTGTAGACCTTTCACCGGCTAGTTGGATGTCAGTTGCTTGGTATGCTAATTCTCTACTTGTTTCCATATGATCATGGGAGTTGATGGTTTGTTGATAGTAGATTTTGTTAAGTTAATGAAACGTGTACGCGTAGAATTGTTGTGTTAGATTGGGATGTGTTAAAAAGGTTTACTTGATGAGTGTTGGATTGGATCTTGTGTGTTCGTTGTAATGTTTACTTTTGGTAATGCTGACTTGCTCGTTTAGTAAGGGGAACAAAAAGGAGGAGTTTTTTCACTAAGTTTTTTCGAATTGAATAACAGGTATCCGATATATCACATTCCTATGGGAAGAACTATTAAAGACTTGTCAGCATGCTTTCTCACATTCCACACACTTTCTTCTTCTTTTCAAGGTATCATTCAATCTGTCTTTTGATTTTTTGAACTTTTGAATATACCGTTGCTTTTCCCTTTACACCGAACCTTTTGGTATAATGGTGTAGATATGGACCTTGATGATGACATGGAGAAT</genome_strand>
        <mrna_strand>AAACATTAGTACAATATTATGTTCCTTATCTTTCTGCTATTCAAATCTTTATCAGCAGATCATCTGTTAATTTTCTCAG............................................................................................................................................GGAAGAGACAGAATCAAGGGATTCATCGTTTAGCGATTCGTTTAGTGATGAGAGTGAAAGTGAGAAGTTGTCAAGATGGGATGGATGTTCATCTGAAGAAGGTGATAGTCTTTGGCATATGAATGATAGATGGGGTTATCTCTATTTTCAGTACTTTGAGAGATCAACTCCTTATGGAAGAGTCCCTTTGATGGACAAG..................................................................................................................................................................................................................................................................................................................................................................................ATTAGTGGTTTCGCTGAAAGATACCCTGGATTAATGTCATTGAGAAGTGTAGACCTTTCACCGGCTAGTTGGATGTCAGTTGCTTG.......................................................................................................................................................................................................................................................................GTATCCGATATATCACATTCCTATGGGAAGAACTATTAAAGACTTGTCAGCATGCTTTCTCACATTCCACACACTTTCTTCTTCTTTTCAAG..........................................................................................ATATGGACCTTGATGATGACATGGAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362376" ref_strand="+" ref_description="SGN-E362376 [cLPP-10-P11]">
      <seq>agaaacagtttcttcaatctctttctctctctttctctctgtgtttgtggtttttgaataatcatgtcaatggaaaaggggtcattacaatcaaaccttgattgtttcttggaatgcacaacaccattagtcccttcacagtttatgcctcagagtgagattagaaacctaaataggctatggcatccatgggaaagagaaaaagttgaatactttactttgggtgatctttggaattgttatgatgaatggagtgcttatggtgctggagtccctattaaaacagattcagcagaaacattagtacaatattatgttccttatctttctgctattcaaatctttatcagcagatcatctgttaattttctcagggaagagacagaatcaagggattcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0019I13-c5oXi/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0019I13.1" temp_strand="-" temp_description="C07HBa0019I13.1  AC232621.2 htgs_phase:2 submitted_to_sgn_as:gi|209977158|gb|AC232621.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0019I13, *** SEQUENCING IN PROGRESS ***">
        <position start="81375" stop="80146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81075" g_stop="80921" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80920" i_stop="80834" i_length="87">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80833" g_stop="80613" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="374" r_length="221" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80612" i_stop="80473" i_length="140">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80472" g_stop="80446" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="401" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0019I13.1" gen_strand="-" ref_id="SGN-E362376" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0019I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81075" e_stop="80921"/>
          <exon e_start="80833" e_stop="80613"/>
          <exon e_start="80472" e_stop="80446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACAGTTTCTTCAATCTCTTTCTCTCTCTTTCTCTCTGTGTGTTTGTGGTTTTTGAATAATCATGTCAATGGAAAAGGGGTCATTACAATCAAACCTTGATTGTTTCTTGGAATGCACAACACCATTAGTCCCTTCACAGTTTTTGCCTCAGGTTTGTTTATTTCCTTTTTGGGTTTTTTCTTTTTTTTTCTTTACCCCCAAATTTGATTTTGATGAATGTGATTTGTGGTATGTGCAGAGTGAGATTAGAAACCTAAATAGGCTATGGCATCCATGGGAAAGAGAAAAAGTTGAATACTTTACTTTGGGTGATCTTTGGAATTGTTATGATGAATGGAGTGCTTATGGTGCTGGAGTTCCTATTAAAACAGATTCAGCAGAAACATTAGTACAATATTATGTTCCTTATCTTTCTGCTATTCAAATCTTTATCAGCAGATCATCTGTTAATTTTCTCAGGTAAAAATTTCAATTTCATCATTATTTATTTTGTGGGTAAATCTTGAATTTTTGTGCATTAAACATCTCGTGTTCACAGAGGATCATTTTAATTGTTAATTATGAAGATAAATGAGGGTTTGTGCTGCATTTTTTAATAGGGAAGAGACAGAATCAAGGGATTCATC</genome_strand>
        <mrna_strand>AGAAACAGTTTCTTCAATCTCTTTCTCTCTCTTTCTCTC--TGTGTTTGTGGTTTTTGAATAATCATGTCAATGGAAAAGGGGTCATTACAATCAAACCTTGATTGTTTCTTGGAATGCACAACACCATTAGTCCCTTCACAGTTTATGCCTCAG.......................................................................................AGTGAGATTAGAAACCTAAATAGGCTATGGCATCCATGGGAAAGAGAAAAAGTTGAATACTTTACTTTGGGTGATCTTTGGAATTGTTATGATGAATGGAGTGCTTATGGTGCTGGAGTCCCTATTAAAACAGATTCAGCAGAAACATTAGTACAATATTATGTTCCTTATCTTTCTGCTATTCAAATCTTTATCAGCAGATCATCTGTTAATTTTCTCAG............................................................................................................................................GGAAGAGACAGAATCAAGGGATTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>80</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1" PGL_stop="1503"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1" e_stop="136"/>
            <exon e_start="297" e_stop="603"/>
            <exon e_start="1386" e_stop="1503"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.978"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="0.987"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="1" e_stop="136" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="137" i_stop="296" i_length="160"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="297" e_stop="603" e_length="307"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="604" i_stop="1385" i_length="782"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="1386" e_stop="1503" e_length="118"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="136"/>
              <exon start="297" stop="603"/>
              <exon start="1386" stop="1503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366453" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACTCTGTGGTAGCTGTAATTGTGTTTTTTTGGCCGTTCATGGCTTCCGCCGGCCCTCTCCGTCGTGTTGTAGACACACATTGGTATCCTGCTACTGCCACGTGGTATGGTAGCCCAGAAGGCGACGGTAGTACTG : GTGGGGCATGTGGGTATGGGTCAATGGTGGATGTGAAACCGTTCAGGGCCAGAGTAGGGGCAGTGAGTCCGATTTTGTTCAAAAATGGTGAAGGATGTGGGGCTTGCTATAAAGTGAAGTGTTTAGACCGTTCCGTTTGTTCGAGAAGAGCTGCGACGGTGATTATTACCGATGAATGTCCCGGCGGGTATTGCTCCGGCGGAAGAGTTCACTTCGATCTTAGTGGCGCCGCCTTCGGCCATATGGCTGTTTCAGGTTACGGCGGAAGCCTCCGTGACCGGGGTGTAATCTCCATCCTCTACCGCCG : AACTCTATGTAAGTACCCTGGAAAGAACATAGCCTTCCATGTAAATGAAGGCTCAACACCTTACTGGCTCTCTCTTCTTGTTGAATTTGAAGATGGAGATGGAGATGTTGGATCCATG</gDNA_template>
            <first_frame> Y  S  V  V  A  V  I  V  F  F  W  P  F  M  A  S  A  G  P  L  R  R  V  V  D  T  H  W  Y  P  A  T  A  T  W  Y  G  S  P  E  G  D  G  S  T   : G  G  A  C  G  Y  G  S  M  V  D  V  K  P  F  R  A  R  V  G  A  V  S  P  I  L  F  K  N  G  E  G  C  G  A  C  Y  K  V  K  C  L  D  R  S  V  C  S  R  R  A  A  T  V  I  I  T  D  E  C  P  G  G  Y  C  S  G  G  R  V  H  F  D  L  S  G  A  A  F  G  H  M  A  V  S  G  Y  G  G  S  L  R  D  R  G  V  I  S  I  L  Y  R  R :   T  L  C  K  Y  P  G  K  N  I  A  F  H  V  N  E  G  S  T  P  Y  W  L  S  L  L  V  E  F  E  D  G  D  G  D  V  G  S  M </first_frame>
            <second_frame>  T  L  W  *  L  *  L  C  F  F  G  R  S  W  L  P  P  A  L  S  V  V  L  *  T  H  I  G  I  L  L  L  P  R  G  M  V  A  Q  K  A  T  V  V  L  :  V  G  H  V  G  M  G  Q  W  W  M  *  N  R  S  G  P  E  *  G  Q  *  V  R  F  C  S  K  M  V  K  D  V  G  L  A  I  K  *  S  V  *  T  V  P  F  V  R  E  E  L  R  R  *  L  L  P  M  N  V  P  A  G  I  A  P  A  E  E  F  T  S  I  L  V  A  P  P  S  A  I  W  L  F  Q  V  T  A  E  A  S  V  T  G  V  *  S  P  S  S  T  A   : E  L  Y  V  S  T  L  E  R  T  *  P  S  M  *  M  K  A  Q  H  L  T  G  S  L  F  L  L  N  L  K  M  E  M  E  M  L  D  P   </second_frame>
            <third_frame>   L  C  G  S  C  N  C  V  F  L  A  V  H  G  F  R  R  P  S  P  S  C  C  R  H  T  L  V  S  C  Y  C  H  V  V  W  *  P  R  R  R  R  *  Y  W :   W  G  M  W  V  W  V  N  G  G  C  E  T  V  Q  G  Q  S  R  G  S  E  S  D  F  V  Q  K  W  *  R  M  W  G  L  L  *  S  E  V  F  R  P  F  R  L  F  E  K  S  C  D  G  D  Y  Y  R  *  M  S  R  R  V  L  L  R  R  K  S  S  L  R  S  *  W  R  R  L  R  P  Y  G  C  F  R  L  R  R  K  P  P  *  P  G  C  N  L  H  P  L  P  P  :  N  S  M  *  V  P  W  K  E  H  S  L  P  C  K  *  R  L  N  T  L  L  A  L  S  S  C  *  I  *  R  W  R  W  R  C  W  I  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0019I13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1" stop="136"/>
                    <exon start="297" stop="603"/>
                    <exon start="1386" stop="1503"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSVVAVIVFFWPFMASAGPLRRVVDTHWYPATATWYGSPEGDGSTGGACGYGSMVDVKPFRARVGAVSPILFKNGEGCGACYKVKCLDRSVCSRRAATVIITDECPGGYCSGGRVHFDLSGAAFGHMAVSGYGGSLRDRGVISILYRRTLCKYPGKNIAFHVNEGSTPYWLSLLVEFEDGDGDVGSM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="2109" PGL_stop="2576"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2109" e_stop="2576"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="2109" e_stop="2576" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2109" stop="2576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2109" stop="2425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCACACACCATTGTTTTACCAAAGAATATATTAAGCATCTTCTTCTTTTTTTGAGTATTAAAAGTTTATCTCCATCTTGGCTTGTTTGTCCAAAGTAATATTATGCACTTTATATCACTTTTTTTTTTACATGCTTTTCCTTTTTATCACTGTTGTTCAATAGTGCAAAAAGTTGCCTTAAAAAGTACAATGCAAAAAAAGTGTCCTTTTTTCCTCATTTTTTTTTATTGAGGGTGTGTTTGATAAGGAATCTTTTGTATGTTTGGTTGGTCAAAACGTTTTGGACAACATGGAAAAAACAAGTTCCTTAAAAATCAAGAATAGTTTTTCCGGTGGGAGTAGGAAAATCTAGTTCCATAAATAGCATTTCAAGCTCATTGTCTCCTCCCCCATCCCAACGCGCTACCCCTTAAAGAGTTTTTCTAGATTTCATATATGTTACTGAGACGATATCTTCTTGCTTACT</gDNA_template>
            <first_frame> N  H  T  P  L  F  Y  Q  R  I  Y  *  A  S  S  S  F  F  E  Y  *  K  F  I  S  I  L  A  C  L  S  K  V  I  L  C  T  L  Y  H  F  F  F  Y  M  L  F  L  F  I  T  V  V  Q  *  C  K  K  L  P  *  K  V  Q  C  K  K  S  V  L  F  S  S  F  F  F  I  E  G  V  F  D  K  E  S  F  V  C  L  V  G  Q  N  V  L  D  N  M  E  K  T  S  S  L  K  I  K  N  S  F  S  G  G  S  R  K  I  *  F  H  K  *  H  F  K  L  I  V  S  S  P  I  P  T  R  Y  P  L  K  S  F  S  R  F  H  I  C  Y  *  D  D  I  F  L  L  T </first_frame>
            <second_frame>  I  T  H  H  C  F  T  K  E  Y  I  K  H  L  L  L  F  L  S  I  K  S  L  S  P  S  W  L  V  C  P  K  *  Y  Y  A  L  Y  I  T  F  F  F  T  C  F  S  F  L  S  L  L  F  N  S  A  K  S  C  L  K  K  Y  N  A  K  K  V  S  F  F  P  H  F  F  L  L  R  V  C  L  I  R  N  L  L  Y  V  W  L  V  K  T  F  W  T  T  W  K  K  Q  V  P  *  K  S  R  I  V  F  P  V  G  V  G  K  S  S  S  I  N  S  I  S  S  S  L  S  P  P  P  S  Q  R  A  T  P  *  R  V  F  L  D  F  I  Y  V  T  E  T  I  S  S  C  L   </second_frame>
            <third_frame>   S  H  T  I  V  L  P  K  N  I  L  S  I  F  F  F  F  *  V  L  K  V  Y  L  H  L  G  L  F  V  Q  S  N  I  M  H  F  I  S  L  F  F  L  H  A  F  P  F  Y  H  C  C  S  I  V  Q  K  V  A  L  K  S  T  M  Q  K  K  C  P  F  F  L  I  F  F  Y  *  G  C  V  *  *  G  I  F  C  M  F  G  W  S  K  R  F  G  Q  H  G  K  N  K  F  L  K  N  Q  E  *  F  F  R  W  E  *  E  N  L  V  P  *  I  A  F  Q  A  H  C  L  L  P  H  P  N  A  L  P  L  K  E  F  F  *  I  S  Y  M  L  L  R  R  Y  L  L  A  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0019I13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2209" stop="2421"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYALYITFFFTCFSFLSLLFNSAKSCLKKYNAKKVSFFPHFFLLRVCLIRNLLYVWLVKTFWTTWKKQVP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="24976" PGL_stop="23771"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24976" e_stop="23771"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="24976" e_stop="23771" e_length="1206"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24976" stop="24365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24975" stop="24387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24956" stop="24396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24551" stop="23860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24551" stop="23935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24437" stop="23771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372939" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACTTAGCATTTCAGCAGAGAACAAGAAAGAGCCGATGGCGACAATTTCATTCAAATTTGCTTCTCCTTCAAAGCCCTCAAACCCTTCGATCGCTCCCAAAAACCCTACAATTTTCAATCTACTACCCACTCCATCGAATCCCCAGCTCAAAAGAGCCTTCTTTCTCAAATCTCCTGCAATTTCTCCCATCTTTATCAGGGCTCTAAAGCCCCAACAATGTCGTTCTTCTTCCACTCCAATCACTTCCCTTTTTACCGGCATAGTTGAAGAAATGGGTCAGATTAAACAACTGGGTTATGATAAACCCGACAGTTTCACCATGAAAATCCAAGCAAAACTCATTCTTGAAGATATCAATCTCGGCGACAGCATTTCCGTCAACGGAACTTGTTTAACAGTAGCTGAGTTCGATACCCAGAAGTTGGAATTCAGTGTTGGGTTGGCGCCGGAGACACTAAGGAAGACTTCTTTGATCGAATTAGAACAAGGGTCTCTGGTGAATCTGGAGAGGGCTTTGAGGCCTAGTACTAGAATGGGGGGTCATTTTGTGCAGGGACATGTTGATGGGACTGGTGAGATTGTTGAGCTCAAAACTGAAGGGGATTCTTTGTGGGTGAAGGTGAAGACTGCTAAAGAGATTTTGAGGTACATTGTGCCAAAAGGATTCATTGCTGTGGATGGGACTAGTTTGACTGTTGTCGATGTGGTTGATGAAGAAGGCTGTTTTAACTTCATGTTGGTGGCGTACACGCAGCAGAATGTGGTGATTCCATTGAAGAAAGTGGGGCAGAAGGTTAATCTTGAGGTGGATATATTGGGAAAGTATGTGGAGAGGCTTCTTAGTAGTGGCTTTGTGGATTCCATCAAATCTTCATGAAAAGGTTGTTACTTTGTGCTTCATTTTATCTGTGTAACTTGCTTTGACAGAATTTTGTATCTTGAATTTCAGAGATGCTGCTTTCCCAATTGTCTCTAGGTGTATTTCGAGATAATGTTTCAGCGAAATAGAATAAACTATATCACCGTGACTCGGGCTTGAGTCAAAGCAAAAGTATGTGAATTTTACACTTAAATTTAGTAATACGGCAAAAACTTGAGCAGCAACTATGAAGGCATATTTTATGTATGATTGTACTGATGTGTTAATCTTCCTGGTTTCACATAGTGTAAACATCAATGAAAAGCAGACGCGAATATTTAGTT</gDNA_template>
            <first_frame> K  T  *  H  F  S  R  E  Q  E  R  A  D  G  D  N  F  I  Q  I  C  F  S  F  K  A  L  K  P  F  D  R  S  Q  K  P  Y  N  F  Q  S  T  T  H  S  I  E  S  P  A  Q  K  S  L  L  S  Q  I  S  C  N  F  S  H  L  Y  Q  G  S  K  A  P  T  M  S  F  F  F  H  S  N  H  F  P  F  Y  R  H  S  *  R  N  G  S  D  *  T  T  G  L  *  *  T  R  Q  F  H  H  E  N  P  S  K  T  H  S  *  R  Y  Q  S  R  R  Q  H  F  R  Q  R  N  L  F  N  S  S  *  V  R  Y  P  E  V  G  I  Q  C  W  V  G  A  G  D  T  K  E  D  F  F  D  R  I  R  T  R  V  S  G  E  S  G  E  G  F  E  A  *  Y  *  N  G  G  S  F  C  A  G  T  C  *  W  D  W  *  D  C  *  A  Q  N  *  R  G  F  F  V  G  E  G  E  D  C  *  R  D  F  E  V  H  C  A  K  R  I  H  C  C  G  W  D  *  F  D  C  C  R  C  G  *  *  R  R  L  F  *  L  H  V  G  G  V  H  A  A  E  C  G  D  S  I  E  E  S  G  A  E  G  *  S  *  G  G  Y  I  G  K  V  C  G  E  A  S  *  *  W  L  C  G  F  H  Q  I  F  M  K  R  L  L  L  C  A  S  F  Y  L  C  N  L  L  *  Q  N  F  V  S  *  I  S  E  M  L  L  S  Q  L  S  L  G  V  F  R  D  N  V  S  A  K  *  N  K  L  Y  H  R  D  S  G  L  S  Q  S  K  S  M  *  I  L  H  L  N  L  V  I  R  Q  K  L  E  Q  Q  L  *  R  H  I  L  C  M  I  V  L  M  C  *  S  S  W  F  H  I  V  *  T  S  M  K  S  R  R  E  Y  L  V </first_frame>
            <second_frame>  K  L  S  I  S  A  E  N  K  K  E  P  M  A  T  I  S  F  K  F  A  S  P  S  K  P  S  N  P  S  I  A  P  K  N  P  T  I  F  N  L  L  P  T  P  S  N  P  Q  L  K  R  A  F  F  L  K  S  P  A  I  S  P  I  F  I  R  A  L  K  P  Q  Q  C  R  S  S  S  T  P  I  T  S  L  F  T  G  I  V  E  E  M  G  Q  I  K  Q  L  G  Y  D  K  P  D  S  F  T  M  K  I  Q  A  K  L  I  L  E  D  I  N  L  G  D  S  I  S  V  N  G  T  C  L  T  V  A  E  F  D  T  Q  K  L  E  F  S  V  G  L  A  P  E  T  L  R  K  T  S  L  I  E  L  E  Q  G  S  L  V  N  L  E  R  A  L  R  P  S  T  R  M  G  G  H  F  V  Q  G  H  V  D  G  T  G  E  I  V  E  L  K  T  E  G  D  S  L  W  V  K  V  K  T  A  K  E  I  L  R  Y  I  V  P  K  G  F  I  A  V  D  G  T  S  L  T  V  V  D  V  V  D  E  E  G  C  F  N  F  M  L  V  A  Y  T  Q  Q  N  V  V  I  P  L  K  K  V  G  Q  K  V  N  L  E  V  D  I  L  G  K  Y  V  E  R  L  L  S  S  G  F  V  D  S  I  K  S  S  *  K  G  C  Y  F  V  L  H  F  I  C  V  T  C  F  D  R  I  L  Y  L  E  F  Q  R  C  C  F  P  N  C  L  *  V  Y  F  E  I  M  F  Q  R  N  R  I  N  Y  I  T  V  T  R  A  *  V  K  A  K  V  C  E  F  Y  T  *  I  *  *  Y  G  K  N  L  S  S  N  Y  E  G  I  F  Y  V  *  L  Y  *  C  V  N  L  P  G  F  T  *  C  K  H  Q  *  K  A  D  A  N  I  *   </second_frame>
            <third_frame>   N  L  A  F  Q  Q  R  T  R  K  S  R  W  R  Q  F  H  S  N  L  L  L  L  Q  S  P  Q  T  L  R  S  L  P  K  T  L  Q  F  S  I  Y  Y  P  L  H  R  I  P  S  S  K  E  P  S  F  S  N  L  L  Q  F  L  P  S  L  S  G  L  *  S  P  N  N  V  V  L  L  P  L  Q  S  L  P  F  L  P  A  *  L  K  K  W  V  R  L  N  N  W  V  M  I  N  P  T  V  S  P  *  K  S  K  Q  N  S  F  L  K  I  S  I  S  A  T  A  F  P  S  T  E  L  V  *  Q  *  L  S  S  I  P  R  S  W  N  S  V  L  G  W  R  R  R  H  *  G  R  L  L  *  S  N  *  N  K  G  L  W  *  I  W  R  G  L  *  G  L  V  L  E  W  G  V  I  L  C  R  D  M  L  M  G  L  V  R  L  L  S  S  K  L  K  G  I  L  C  G  *  R  *  R  L  L  K  R  F  *  G  T  L  C  Q  K  D  S  L  L  W  M  G  L  V  *  L  L  S  M  W  L  M  K  K  A  V  L  T  S  C  W  W  R  T  R  S  R  M  W  *  F  H  *  R  K  W  G  R  R  L  I  L  R  W  I  Y  W  E  S  M  W  R  G  F  L  V  V  A  L  W  I  P  S  N  L  H  E  K  V  V  T  L  C  F  I  L  S  V  *  L  A  L  T  E  F  C  I  L  N  F  R  D  A  A  F  P  I  V  S  R  C  I  S  R  *  C  F  S  E  I  E  *  T  I  S  P  *  L  G  L  E  S  K  Q  K  Y  V  N  F  T  L  K  F  S  N  T  A  K  T  *  A  A  T  M  K  A  Y  F  M  Y  D  C  T  D  V  L  I  F  L  V  S  H  S  V  N  I  N  E  K  Q  T  R  I  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0019I13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24975" stop="24097"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLSISAENKKEPMATISFKFASPSKPSNPSIAPKNPTIFNLLPTPSNPQLKRAFFLKSPAISPIFIRALKPQQCRSSSTPITSLFTGIVEEMGQIKQLGYDKPDSFTMKIQAKLILEDINLGDSISVNGTCLTVAEFDTQKLEFSVGLAPETLRKTSLIELEQGSLVNLERALRPSTRMGGHFVQGHVDGTGEIVELKTEGDSLWVKVKTAKEILRYIVPKGFIAVDGTSLTVVDVVDEEGCFNFMLVAYTQQNVVIPLKKVGQKVNLEVDILGKYVERLLSSGFVDSIKSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24976" e_stop="24093"/>
            <exon e_start="24024" e_stop="24008"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.835" acc_prob="0.920" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24976" e_stop="24093" e_length="884"/>
          </exon>
          <intron i_serial="1" don_prob="0.835" acc_prob="0.920">
            <gDNA_intron_boundary i_start="24092" i_stop="24025" i_length="68"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24024" e_stop="24008" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24976" stop="24365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24975" stop="24387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24956" stop="24396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24478" stop="24093"/>
              <exon start="24024" stop="24008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291371" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACTTAGCATTTCAGCAGAGAACAAGAAAGAGCCGATGGCGACAATTTCATTCAAATTTGCTTCTCCTTCAAAGCCCTCAAACCCTTCGATCGCTCCCAAAAACCCTACAATTTTCAATCTACTACCCACTCCATCGAATCCCCAGCTCAAAAGAGCCTTCTTTCTCAAATCTCCTGCAATTTCTCCCATCTTTATCAGGGCTCTAAAGCCCCAACAATGTCGTTCTTCTTCCACTCCAATCACTTCCCTTTTTACCGGCATAGTTGAAGAAATGGGTCAGATTAAACAACTGGGTTATGATAAACCCGACAGTTTCACCATGAAAATCCAAGCAAAACTCATTCTTGAAGATATCAATCTCGGCGACAGCATTTCCGTCAACGGAACTTGTTTAACAGTAGCTGAGTTCGATACCCAGAAGTTGGAATTCAGTGTTGGGTTGGCGCCGGAGACACTAAGGAAGACTTCTTTGATCGAATTAGAACAAGGGTCTCTGGTGAATCTGGAGAGGGCTTTGAGGCCTAGTACTAGAATGGGGGGTCATTTTGTGCAGGGACATGTTGATGGGACTGGTGAGATTGTTGAGCTCAAAACTGAAGGGGATTCTTTGTGGGTGAAGGTGAAGACTGCTAAAGAGATTTTGAGGTACATTGTGCCAAAAGGATTCATTGCTGTGGATGGGACTAGTTTGACTGTTGTCGATGTGGTTGATGAAGAAGGCTGTTTTAACTTCATGTTGGTGGCGTACACGCAGCAGAATGTGGTGATTCCATTGAAGAAAGTGGGGCAGAAGGTTAATCTTGAGGTGGATATATTGGGAAAGTATGTGGAGAGGCTTCTTAGTAGTGGCTTTGTGGATTCCATCAAATCTTCATGAAAAG : AGATGCTGCTTTCCCAA</gDNA_template>
            <first_frame> K  T  *  H  F  S  R  E  Q  E  R  A  D  G  D  N  F  I  Q  I  C  F  S  F  K  A  L  K  P  F  D  R  S  Q  K  P  Y  N  F  Q  S  T  T  H  S  I  E  S  P  A  Q  K  S  L  L  S  Q  I  S  C  N  F  S  H  L  Y  Q  G  S  K  A  P  T  M  S  F  F  F  H  S  N  H  F  P  F  Y  R  H  S  *  R  N  G  S  D  *  T  T  G  L  *  *  T  R  Q  F  H  H  E  N  P  S  K  T  H  S  *  R  Y  Q  S  R  R  Q  H  F  R  Q  R  N  L  F  N  S  S  *  V  R  Y  P  E  V  G  I  Q  C  W  V  G  A  G  D  T  K  E  D  F  F  D  R  I  R  T  R  V  S  G  E  S  G  E  G  F  E  A  *  Y  *  N  G  G  S  F  C  A  G  T  C  *  W  D  W  *  D  C  *  A  Q  N  *  R  G  F  F  V  G  E  G  E  D  C  *  R  D  F  E  V  H  C  A  K  R  I  H  C  C  G  W  D  *  F  D  C  C  R  C  G  *  *  R  R  L  F  *  L  H  V  G  G  V  H  A  A  E  C  G  D  S  I  E  E  S  G  A  E  G  *  S  *  G  G  Y  I  G  K  V  C  G  E  A  S  *  *  W  L  C  G  F  H  Q  I  F  M  K  R :   D  A  A  F  P  </first_frame>
            <second_frame>  K  L  S  I  S  A  E  N  K  K  E  P  M  A  T  I  S  F  K  F  A  S  P  S  K  P  S  N  P  S  I  A  P  K  N  P  T  I  F  N  L  L  P  T  P  S  N  P  Q  L  K  R  A  F  F  L  K  S  P  A  I  S  P  I  F  I  R  A  L  K  P  Q  Q  C  R  S  S  S  T  P  I  T  S  L  F  T  G  I  V  E  E  M  G  Q  I  K  Q  L  G  Y  D  K  P  D  S  F  T  M  K  I  Q  A  K  L  I  L  E  D  I  N  L  G  D  S  I  S  V  N  G  T  C  L  T  V  A  E  F  D  T  Q  K  L  E  F  S  V  G  L  A  P  E  T  L  R  K  T  S  L  I  E  L  E  Q  G  S  L  V  N  L  E  R  A  L  R  P  S  T  R  M  G  G  H  F  V  Q  G  H  V  D  G  T  G  E  I  V  E  L  K  T  E  G  D  S  L  W  V  K  V  K  T  A  K  E  I  L  R  Y  I  V  P  K  G  F  I  A  V  D  G  T  S  L  T  V  V  D  V  V  D  E  E  G  C  F  N  F  M  L  V  A  Y  T  Q  Q  N  V  V  I  P  L  K  K  V  G  Q  K  V  N  L  E  V  D  I  L  G  K  Y  V  E  R  L  L  S  S  G  F  V  D  S  I  K  S  S  *  K   : E  M  L  L  S  Q </second_frame>
            <third_frame>   N  L  A  F  Q  Q  R  T  R  K  S  R  W  R  Q  F  H  S  N  L  L  L  L  Q  S  P  Q  T  L  R  S  L  P  K  T  L  Q  F  S  I  Y  Y  P  L  H  R  I  P  S  S  K  E  P  S  F  S  N  L  L  Q  F  L  P  S  L  S  G  L  *  S  P  N  N  V  V  L  L  P  L  Q  S  L  P  F  L  P  A  *  L  K  K  W  V  R  L  N  N  W  V  M  I  N  P  T  V  S  P  *  K  S  K  Q  N  S  F  L  K  I  S  I  S  A  T  A  F  P  S  T  E  L  V  *  Q  *  L  S  S  I  P  R  S  W  N  S  V  L  G  W  R  R  R  H  *  G  R  L  L  *  S  N  *  N  K  G  L  W  *  I  W  R  G  L  *  G  L  V  L  E  W  G  V  I  L  C  R  D  M  L  M  G  L  V  R  L  L  S  S  K  L  K  G  I  L  C  G  *  R  *  R  L  L  K  R  F  *  G  T  L  C  Q  K  D  S  L  L  W  M  G  L  V  *  L  L  S  M  W  L  M  K  K  A  V  L  T  S  C  W  W  R  T  R  S  R  M  W  *  F  H  *  R  K  W  G  R  R  L  I  L  R  W  I  Y  W  E  S  M  W  R  G  F  L  V  V  A  L  W  I  P  S  N  L  H  E  K  :  R  C  C  F  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0019I13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24975" stop="24097"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLSISAENKKEPMATISFKFASPSKPSNPSIAPKNPTIFNLLPTPSNPQLKRAFFLKSPAISPIFIRALKPQQCRSSSTPITSLFTGIVEEMGQIKQLGYDKPDSFTMKIQAKLILEDINLGDSISVNGTCLTVAEFDTQKLEFSVGLAPETLRKTSLIELEQGSLVNLERALRPSTRMGGHFVQGHVDGTGEIVELKTEGDSLWVKVKTAKEILRYIVPKGFIAVDGTSLTVVDVVDEEGCFNFMLVAYTQQNVVIPLKKVGQKVNLEVDILGKYVERLLSSGFVDSIKSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="27479" PGL_stop="26935"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27479" e_stop="26935"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="27479" e_stop="26935" e_length="545"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27479" stop="26935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243101" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAATAACAACAGTTAGACAAGTTAAATATCCTCAACAACAACACTTTAACAAATTACATATCCGCAATAACAAGCTCAATATTGATCAATCACAAGTTCCGCAGAAAGGCAATCAGAAGATCAGCAAAACACGATATCAAATTCACTAATGATAAGTATATGCAATGAAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGATGTCTCTCAGTCGGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGACCCTCGATATAGTAACCATCACGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGTGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACTCATTCTTTTTCAATGCACATAACACTTGTGACAACCAATGCGTCAGAATAATGCAGATGACAAGTTCACACAAATAATGAGGAGATGACCACTTTCATAACATCGCACACTTCACAACCACACAAACATGAAGTCACATCAACAATGA</gDNA_template>
            <first_frame> L  N  N  N  S  *  T  S  *  I  S  S  T  T  T  L  *  Q  I  T  Y  P  Q  *  Q  A  Q  Y  *  S  I  T  S  S  A  E  R  Q  S  E  D  Q  Q  N  T  I  S  N  S  L  M  I  S  I  C  N  E  M  E  C  N  V  K  Y  N  D  A  C  L  T  *  *  Y  T  P  D  V  S  Q  S  G  T  H  G  G  H  I  C  P  C  I  C  R  G  A  R  H  D  P  R  Y  S  N  H  H  G  A  R  Y  V  P  R  N  I  V  S  I  A  V  R  D  T  S  L  E  M  V  H  P  L  K  Y  S  F  F  F  N  A  H  N  T  C  D  N  Q  C  V  R  I  M  Q  M  T  S  S  H  K  *  *  G  D  D  H  F  H  N  I  A  H  F  T  T  T  Q  T  *  S  H  I  N  N   </first_frame>
            <second_frame>  S  I  T  T  V  R  Q  V  K  Y  P  Q  Q  Q  H  F  N  K  L  H  I  R  N  N  K  L  N  I  D  Q  S  Q  V  P  Q  K  G  N  Q  K  I  S  K  T  R  Y  Q  I  H  *  *  *  V  Y  A  M  K  W  N  A  M  S  S  I  M  M  H  V  *  P  S  D  T  H  P  M  S  L  S  R  G  P  M  G  D  I  S  V  H  A  S  V  A  A  H  D  T  T  L  D  I  V  T  I  T  A  R  D  T  S  L  E  I  *  Y  P  S  R  C  A  I  R  P  S  K  W  Y  I  L  L  S  T  H  S  F  S  M  H  I  T  L  V  T  T  N  A  S  E  *  C  R  *  Q  V  H  T  N  N  E  E  M  T  T  F  I  T  S  H  T  S  Q  P  H  K  H  E  V  T  S  T  M  </second_frame>
            <third_frame>   Q  *  Q  Q  L  D  K  L  N  I  L  N  N  N  T  L  T  N  Y  I  S  A  I  T  S  S  I  L  I  N  H  K  F  R  R  K  A  I  R  R  S  A  K  H  D  I  K  F  T  N  D  K  Y  M  Q  *  N  G  M  Q  C  Q  V  *  *  C  M  S  D  L  V  I  H  T  R  C  L  S  V  G  D  P  W  G  T  Y  L  S  M  H  L  S  R  R  T  T  R  P  S  I  *  *  P  S  R  R  A  I  R  P  S  K  Y  S  I  H  R  G  A  R  Y  V  P  R  N  G  T  S  S  *  V  L  I  L  F  Q  C  T  *  H  L  *  Q  P  M  R  Q  N  N  A  D  D  K  F  T  Q  I  M  R  R  *  P  L  S  *  H  R  T  L  H  N  H  T  N  M  K  S  H  Q  Q  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0019I13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27263" stop="27006"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTPDVSQSGTHGGHICPCICRGARHDPRYSNHHGARYVPRNIVSIAVRDTSLEMVHPLKYSFFFNAHNTCDNQCVRIMQMTSSHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="31441" PGL_stop="32113"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31441" e_stop="32113"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="31441" e_stop="32113" e_length="673"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31441" stop="32113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733389" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGGCTGAAGCTAGGCATGGCTACAAAAGGGAAGCTGATGTTATGATGGCTAAAGCATTGCAGGAGTGCCCCAACAGTGGCATTCTTTGGGCTGCTTCAATTGAAATGGCGCCTCGACCTCAAAGAAAAACCAAGAGCTCTGACGCTTTAAAGAAGTGTGATCATGATCCTCATGTTATTGCTGCTGTAGCTAAGCTCTTTTGGCAGGAGAGGAAAGTAGATAAAGCAAGAAATTGGTTCAATAGGGCAGTGACCCTTGCACCAGATATTGGTGATTTCTGGGCATTGTATTTCAAATTTGAACAGCAGCATGGAGCAGAAGAGCAGAGGAGCGATGTGCTGAAGCGATGTGTTGCTGCAGAGCCAAAGCATGGTGAAAAATGGCAAGCTACATCAAAGGCCGTAGAGAACTCTCATGAACCAACTGAAAGCATATTGAAGAAGGTGGTAGCCACACTAAAGAAGGAGGAGAATTTGGCTGAAAATAACCACAACTAATCTGCTGTAGTGCATGAGTCAATGTACTTGATAATCTAGAGAGATTTATAGGTTAGGAGACAGTAGTTAAAACATCCTTATTTTTGTTTTACTTCAAATGGTTGGATCTTGGTTGTATTTGTCACCTTTCTTGAGCTTAAAAAATTGCAATTTTCCATTTCTCATATTGTTCTCA</gDNA_template>
            <first_frame> R  A  E  A  R  H  G  Y  K  R  E  A  D  V  M  M  A  K  A  L  Q  E  C  P  N  S  G  I  L  W  A  A  S  I  E  M  A  P  R  P  Q  R  K  T  K  S  S  D  A  L  K  K  C  D  H  D  P  H  V  I  A  A  V  A  K  L  F  W  Q  E  R  K  V  D  K  A  R  N  W  F  N  R  A  V  T  L  A  P  D  I  G  D  F  W  A  L  Y  F  K  F  E  Q  Q  H  G  A  E  E  Q  R  S  D  V  L  K  R  C  V  A  A  E  P  K  H  G  E  K  W  Q  A  T  S  K  A  V  E  N  S  H  E  P  T  E  S  I  L  K  K  V  V  A  T  L  K  K  E  E  N  L  A  E  N  N  H  N  *  S  A  V  V  H  E  S  M  Y  L  I  I  *  R  D  L  *  V  R  R  Q  *  L  K  H  P  Y  F  C  F  T  S  N  G  W  I  L  V  V  F  V  T  F  L  E  L  K  K  L  Q  F  S  I  S  H  I  V  L  </first_frame>
            <second_frame>  G  L  K  L  G  M  A  T  K  G  K  L  M  L  *  W  L  K  H  C  R  S  A  P  T  V  A  F  F  G  L  L  Q  L  K  W  R  L  D  L  K  E  K  P  R  A  L  T  L  *  R  S  V  I  M  I  L  M  L  L  L  L  *  L  S  S  F  G  R  R  G  K  *  I  K  Q  E  I  G  S  I  G  Q  *  P  L  H  Q  I  L  V  I  S  G  H  C  I  S  N  L  N  S  S  M  E  Q  K  S  R  G  A  M  C  *  S  D  V  L  L  Q  S  Q  S  M  V  K  N  G  K  L  H  Q  R  P  *  R  T  L  M  N  Q  L  K  A  Y  *  R  R  W  *  P  H  *  R  R  R  R  I  W  L  K  I  T  T  T  N  L  L  *  C  M  S  Q  C  T  *  *  S  R  E  I  Y  R  L  G  D  S  S  *  N  I  L  I  F  V  L  L  Q  M  V  G  S  W  L  Y  L  S  P  F  L  S  L  K  N  C  N  F  P  F  L  I  L  F  S </second_frame>
            <third_frame>   G  *  S  *  A  W  L  Q  K  G  S  *  C  Y  D  G  *  S  I  A  G  V  P  Q  Q  W  H  S  L  G  C  F  N  *  N  G  A  S  T  S  K  K  N  Q  E  L  *  R  F  K  E  V  *  S  *  S  S  C  Y  C  C  C  S  *  A  L  L  A  G  E  E  S  R  *  S  K  K  L  V  Q  *  G  S  D  P  C  T  R  Y  W  *  F  L  G  I  V  F  Q  I  *  T  A  A  W  S  R  R  A  E  E  R  C  A  E  A  M  C  C  C  R  A  K  A  W  *  K  M  A  S  Y  I  K  G  R  R  E  L  S  *  T  N  *  K  H  I  E  E  G  G  S  H  T  K  E  G  G  E  F  G  *  K  *  P  Q  L  I  C  C  S  A  *  V  N  V  L  D  N  L  E  R  F  I  G  *  E  T  V  V  K  T  S  L  F  L  F  Y  F  K  W  L  D  L  G  C  I  C  H  L  S  *  A  *  K  I  A  I  F  H  F  S  Y  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0019I13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31441" stop="31938"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAEARHGYKREADVMMAKALQECPNSGILWAASIEMAPRPQRKTKSSDALKKCDHDPHVIAAVAKLFWQERKVDKARNWFNRAVTLAPDIGDFWALYFKFEQQHGAEEQRSDVLKRCVAAEPKHGEKWQATSKAVENSHEPTESILKKVVATLKKEENLAENNHN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="39012" PGL_stop="35672"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39012" e_stop="38863"/>
            <exon e_start="38780" e_stop="38682"/>
            <exon e_start="37929" e_stop="37398"/>
            <exon e_start="36844" e_stop="36486"/>
            <exon e_start="36374" e_stop="35888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39012" e_stop="38863" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.966">
            <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38780" e_stop="38682" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.971">
            <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37929" e_stop="37398" e_length="532"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37397" i_stop="36845" i_length="553"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36844" e_stop="36486" e_length="359"/>
          </exon>
          <intron i_serial="4" don_prob="0.967" acc_prob="0.000">
            <gDNA_intron_boundary i_start="36485" i_stop="36375" i_length="111"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36374" e_stop="35888" e_length="487"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39012" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39011" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39010" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37398"/>
              <exon start="36844" stop="36796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39010" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279123" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39010" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39008" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39008" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39008" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39006" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37398"/>
              <exon start="36844" stop="36799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39006" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39001" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39001" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38988" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38985" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38984" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37398"/>
              <exon start="36844" stop="36736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38982" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37398"/>
              <exon start="36844" stop="36807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38982" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38980" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38980" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38977" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38977" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38974" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38921" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37398"/>
              <exon start="36844" stop="36819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38920" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37398"/>
              <exon start="36844" stop="36661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38914" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37398"/>
              <exon start="36844" stop="36675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38914" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38913" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38902" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37398"/>
              <exon start="36844" stop="36818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38873" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37398"/>
              <exon start="36844" stop="36704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38778" stop="38682"/>
              <exon start="37929" stop="37472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38759" stop="38682"/>
              <exon start="37929" stop="37398"/>
              <exon start="36844" stop="36621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38759" stop="38682"/>
              <exon start="37929" stop="37507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38743" stop="38682"/>
              <exon start="37929" stop="37515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38741" stop="38682"/>
              <exon start="37929" stop="37398"/>
              <exon start="36844" stop="36736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37868" stop="37398"/>
              <exon start="36844" stop="36627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37839" stop="37398"/>
              <exon start="36844" stop="36486"/>
              <exon start="36374" stop="36326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37814" stop="37468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37782" stop="37398"/>
              <exon start="36844" stop="36671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37728" stop="37398"/>
              <exon start="36844" stop="36486"/>
              <exon start="36374" stop="36065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37677" stop="37398"/>
              <exon start="36844" stop="36671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37668" stop="37398"/>
              <exon start="36844" stop="36677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37500" stop="37398"/>
              <exon start="36844" stop="36486"/>
              <exon start="36374" stop="36104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37500" stop="37398"/>
              <exon start="36844" stop="36486"/>
              <exon start="36374" stop="36305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36839" stop="36486"/>
              <exon start="36374" stop="36303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36686" stop="36486"/>
              <exon start="36374" stop="35917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36621" stop="36486"/>
              <exon start="36374" stop="36094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267930" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36611" stop="36486"/>
              <exon start="36374" stop="36021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36611" stop="36486"/>
              <exon start="36374" stop="36021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36275" stop="35888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36275" stop="35888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36274" stop="35888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294179" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCATTCCAGAACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG : GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG : GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG : GAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAGAGTACCATAGGCGTTTCCACGAGGAGACTGGCATTGCCTTTGCTTCCCTCTATCCCGGCTGCATTGCTGAAACTGGTTTATTTAGGAATCACATTCCCTTGTTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACCAAAGGCTATGTATCTGAAGAAGAAGCAGGAAAAAGACTTGCACAG : GTAGTACGTGATCCAAGTCTTTCAAAATCCGGTGTCTACTGGAGTTGGAACAGTACCTCCTCCTCTTTTGAGAACCAGCTGTCGAAGGAAGCCAGTGATGCAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAGAAGCTCGTTGGACTGGCTTAAATGGAGTGGCAAGGGTGCGACTTGTTTTCCCATCCAAGTCAGGAGAAGATGTATATATGAGATCACCAGAGTTCTTTTATCAAAATACTTATTGGTATTTGTTGTTGATTGATTTTACCAACAGAGTTTTCAGGTAGGTAGGCAACAAGTTCTTGTAATGATATGGACATCTCAATTCTAAGACCATGTGCATAACCAGCAACTCTTAAACTGGAGGGACCTGCAAAGAATTGATCAGATCAGAGAGTATATGATCCATCATGTTATTTACCAAATTTAGATAAGACGACTGGTATTTCTAAATATCCATTAATAGCTAGCTTCGTTACTT</gDNA_template>
            <first_frame> D  H  S  R  T  H  H  P  K  P  P  T  T  P  S  *  A  E  C  C  N  K  E  L  S  E  K  I  I  R  C  K  M  A  L  Q  A  A  S  L  L  P  S  A  F  S  L  H  K  E  :  G  K  T  S  S  A  N  L  K  D  S  S  F  F  G  V  A  L  S  C  N  L  K  S  K  F  T  P  A  A  G  N  K  :  E  L  T  R  K  L  A  I  V  P  I  R  A  Q  T  A  A  T  T  P  A  I  T  Q  S  T  S  G  Q  K  K  T  L  R  K  G  N  V  I  I  T  G  A  S  S  G  L  G  L  A  T  A  K  A  I  G  E  S  G  D  W  H  V  I  M  A  C  R  D  F  L  K  A  E  K  A  A  K  S  L  G  I  P  K  E  N  Y  T  V  M  H  L  D  L  A  S  L  E  S  V  R  Q  F  V  D  N  F  R  R  S  G  R  P  L  D  A  L  V  C  N  A  A  V  Y  L  P  T  A  K  E  P  T  F  T  A  D  G  F  E  L  S  V  G  T  N  H  L  G  H  F  L  L  S  R  L  L  L  D  D  L  K  Q  S  D  Y  P  Q  K  R  L  I  I  V  G  S  I  T   : G  N  T  N  T  L  A  G  N  V  P  P  K  A  N  L  G  D  L  R  G  L  S  G  G  L  N  S  L  N  C  S  P  M  I  D  G  G  E  F  D  G  A  K  A  Y  K  D  S  K  V  C  N  M  L  T  M  Q  E  Y  H  R  R  F  H  E  E  T  G  I  A  F  A  S  L  Y  P  G  C  I  A  E  T  G  L  F  R  N  H  I  P  L  F  R  T  L  F  P  P  F  Q  K  Y  I  T  K  G  Y  V  S  E  E  E  A  G  K  R  L  A  Q  :  V  V  R  D  P  S  L  S  K  S  G  V  Y  W  S  W  N  S  T  S  S  S  F  E  N  Q  L  S  K  E  A  S  D  A  E  K  A  R  K  L  W  E  V  S  E  K  L  V  G  L  A  *  M  E  W  Q  G  C  D  L  F  S  H  P  S  Q  E  K  M  Y  I  *  D  H  Q  S  S  F  I  K  I  L  I  G  I  C  C  *  L  I  L  P  T  E  F  S  G  R  *  A  T  S  S  C  N  D  M  D  I  S  I  L  R  P  C  A  *  P  A  T  L  K  L  E  G  P  A  K  N  *  S  D  Q  R  V  Y  D  P  S  C  Y  L  P  N  L  D  K  T  T  G  I  S  K  Y  P  L  I  A  S  F  V  T  </first_frame>
            <second_frame>  I  I  P  E  P  T  T  P  N  P  Q  P  H  L  L  K  Q  S  V  V  T  K  S  *  V  K  K  S  L  G  A  K  W  L  Y  K  Q  H  L  C  F  H  L  H  F  L  Y  T  K  R :   V  K  H  Q  V  L  I  S  R  T  V  A  S  L  E  L  H  C  L  A  I  *  N  L  N  L  L  L  L  Q  E  T  R :   N  *  Q  G  N  *  R  L  Y  L  L  E  H  K  Q  L  L  P  L  L  Q  S  P  S  L  P  Q  D  R  R  K  H  S  G  K  A  M  *  *  S  P  E  P  P  L  V  *  D  *  L  Q  Q  R  L  *  A  S  Q  E  T  G  T  L  *  W  P  V  G  T  S  S  R  L  K  K  Q  Q  N  H  L  A  F  R  R  K  I  T  L  S  C  I  W  I  S  L  P  L  K  V  S  A  N  L  *  I  I  S  D  V  Q  G  G  H  L  M  R  *  Y  A  M  L  Q  C  T  C  Q  L  L  K  S  Q  L  L  R  L  M  D  L  S  L  V  W  A  P  T  I  S  D  I  S  F  F  Q  G  C  C  *  M  T  S  S  N  Q  I  I  H  K  S  A  L  *  L  L  A  P  *  Q  :  E  T  Q  I  L  W  L  E  M  C  H  Q  R  L  I  L  E  I  Y  E  D  F  Q  E  G  *  I  V  *  T  A  H  P  *  L  M  E  E  N  L  M  V  P  K  P  I  K  T  A  K  S  V  T  C  L  P  C  K  S  T  I  G  V  S  T  R  R  L  A  L  P  L  L  P  S  I  P  A  A  L  L  K  L  V  Y  L  G  I  T  F  P  C  S  G  L  S  S  H  H  F  K  S  T  *  P  K  A  M  Y  L  K  K  K  Q  E  K  D  L  H  R :   *  Y  V  I  Q  V  F  Q  N  P  V  S  T  G  V  G  T  V  P  P  P  L  L  R  T  S  C  R  R  K  P  V  M  Q  R  R  H  A  S  Y  G  R  S  V  R  S  S  L  D  W  L  K  W  S  G  K  G  A  T  C  F  P  I  Q  V  R  R  R  C  I  Y  E  I  T  R  V  L  L  S  K  Y  L  L  V  F  V  V  D  *  F  Y  Q  Q  S  F  Q  V  G  R  Q  Q  V  L  V  M  I  W  T  S  Q  F  *  D  H  V  H  N  Q  Q  L  L  N  W  R  D  L  Q  R  I  D  Q  I  R  E  Y  M  I  H  H  V  I  Y  Q  I  *  I  R  R  L  V  F  L  N  I  H  *  *  L  A  S  L  L </second_frame>
            <third_frame>   S  F  Q  N  P  P  P  Q  T  P  N  H  T  F  L  S  R  V  L  *  Q  R  V  E  *  K  N  H  *  V  Q  N  G  S  T  S  S  I  F  A  S  I  C  I  F  S  T  Q  R   : G  *  N  I  K  C  *  S  Q  G  Q  *  L  L  W  S  C  I  V  L  Q  S  E  I  *  I  Y  S  C  C  R  K  Q   : G  I  D  K  E  I  S  D  C  T  Y  *  S  T  N  S  C  Y  H  S  C  N  H  P  V  Y  L  R  T  E  E  N  T  Q  E  R  Q  C  D  N  H  R  S  L  L  W  F  R  T  S  Y  S  K  G  Y  R  R  V  R  R  L  A  R  Y  N  G  L  *  G  L  P  Q  G  *  K  S  S  K  I  T  W  H  S  E  G  K  L  H  C  H  A  S  G  S  R  F  P  *  K  C  P  P  I  C  R  *  F  P  T  F  R  E  A  T  *  C  A  S  M  Q  C  C  S  V  L  A  N  C  *  R  A  N  F  Y  G  *  W  I  *  A  *  C  G  H  Q  P  S  R  T  F  P  S  F  K  V  A  A  R  *  P  Q  A  I  R  L  S  T  K  A  P  Y  N  C  W  L  H  N  R :   K  H  K  Y  F  G  W  K  C  A  T  K  G  *  S  W  R  S  T  R  T  F  R  R  V  E  *  F  K  L  L  T  H  D  *  W  R  R  I  *  W  C  Q  S  L  *  R  Q  Q  S  L  *  H  A  Y  H  A  R  V  P  *  A  F  P  R  G  D  W  H  C  L  C  F  P  L  S  R  L  H  C  *  N  W  F  I  *  E  S  H  S  L  V  Q  D  S  L  P  T  I  S  K  V  H  N  Q  R  L  C  I  *  R  R  S  R  K  K  T  C  T   : G  S  T  *  S  K  S  F  K  I  R  C  L  L  E  L  E  Q  Y  L  L  L  F  *  E  P  A  V  E  G  S  Q  *  C  R  E  G  T  Q  A  M  G  G  Q  *  E  A  R  W  T  G  L  N  G  V  A  R  V  R  L  V  F  P  S  K  S  G  E  D  V  Y  M  R  S  P  E  F  F  Y  Q  N  T  Y  W  Y  L  L  L  I  D  F  T  N  R  V  F  R  *  V  G  N  K  F  L  *  *  Y  G  H  L  N  S  K  T  M  C  I  T  S  N  S  *  T  G  G  T  C  K  E  L  I  R  S  E  S  I  *  S  I  M  L  F  T  K  F  R  *  D  D  W  Y  F  *  I  S  I  N  S  *  L  R  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0019I13.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38964" stop="38863"/>
                    <exon start="38780" stop="38682"/>
                    <exon start="37929" stop="37398"/>
                    <exon start="36844" stop="36486"/>
                    <exon start="36374" stop="36219"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AECCNKELSEKIIRCKMALQAASLLPSAFSLHKEGKTSSANLKDSSFFGVALSCNLKSKFTPAAGNKELTRKLAIVPIRAQTAATTPAITQSTSGQKKTLRKGNVIITGASSGLGLATAKAIGESGDWHVIMACRDFLKAEKAAKSLGIPKENYTVMHLDLASLESVRQFVDNFRRSGRPLDALVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKQSDYPQKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLSGGLNSLNCSPMIDGGEFDGAKAYKDSKVCNMLTMQEYHRRFHEETGIAFASLYPGCIAETGLFRNHIPLFRTLFPPFQKYITKGYVSEEEAGKRLAQVVRDPSLSKSGVYWSWNSTSSSFENQLSKEASDAEKARKLWEVSEKLVGLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39012" e_stop="38863"/>
            <exon e_start="38780" e_stop="38682"/>
            <exon e_start="37929" e_stop="37398"/>
            <exon e_start="36844" e_stop="36486"/>
            <exon e_start="36374" e_stop="35904"/>
            <exon e_start="35682" e_stop="35672"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.061" acc_prob="0.489" e_score="1.000"/>
          <exon-only e_score="0.636"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39012" e_stop="38863" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.966">
            <gDNA_intron_boundary i_start="38862" i_stop="38781" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38780" e_stop="38682" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.971">
            <gDNA_intron_boundary i_start="38681" i_stop="37930" i_length="752"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37929" e_stop="37398" e_length="532"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37397" i_stop="36845" i_length="553"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36844" e_stop="36486" e_length="359"/>
          </exon>
          <intron i_serial="4" don_prob="0.967" acc_prob="0.000">
            <gDNA_intron_boundary i_start="36485" i_stop="36375" i_length="111"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36374" e_stop="35904" e_length="471"/>
          </exon>
          <intron i_serial="5" don_prob="0.061" acc_prob="0.489">
            <gDNA_intron_boundary i_start="35903" i_stop="35683" i_length="221"/>
          </intron>
          <exon e_serial="6" e_score="0.636">
            <gDNA_exon_boundary e_start="35682" e_stop="35672" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39012" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39011" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39010" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37398"/>
              <exon start="36844" stop="36796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39010" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279123" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39010" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39008" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39008" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39008" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39006" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37398"/>
              <exon start="36844" stop="36799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39006" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39001" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39001" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39000" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37398"/>
              <exon start="36844" stop="36486"/>
              <exon start="36374" stop="35904"/>
              <exon start="35682" stop="35672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38988" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38985" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38984" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37398"/>
              <exon start="36844" stop="36736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38982" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37398"/>
              <exon start="36844" stop="36807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38982" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38980" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38980" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38977" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38977" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38974" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38921" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37398"/>
              <exon start="36844" stop="36819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38920" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37398"/>
              <exon start="36844" stop="36661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38914" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37398"/>
              <exon start="36844" stop="36675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38914" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38913" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38902" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37398"/>
              <exon start="36844" stop="36818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38873" stop="38863"/>
              <exon start="38780" stop="38682"/>
              <exon start="37929" stop="37398"/>
              <exon start="36844" stop="36704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38778" stop="38682"/>
              <exon start="37929" stop="37472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38759" stop="38682"/>
              <exon start="37929" stop="37398"/>
              <exon start="36844" stop="36621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38759" stop="38682"/>
              <exon start="37929" stop="37507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38743" stop="38682"/>
              <exon start="37929" stop="37515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38741" stop="38682"/>
              <exon start="37929" stop="37398"/>
              <exon start="36844" stop="36736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37868" stop="37398"/>
              <exon start="36844" stop="36627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37839" stop="37398"/>
              <exon start="36844" stop="36486"/>
              <exon start="36374" stop="36326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37814" stop="37468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37782" stop="37398"/>
              <exon start="36844" stop="36671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37728" stop="37398"/>
              <exon start="36844" stop="36486"/>
              <exon start="36374" stop="36065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37677" stop="37398"/>
              <exon start="36844" stop="36671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37668" stop="37398"/>
              <exon start="36844" stop="36677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37500" stop="37398"/>
              <exon start="36844" stop="36486"/>
              <exon start="36374" stop="36104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37500" stop="37398"/>
              <exon start="36844" stop="36486"/>
              <exon start="36374" stop="36305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36839" stop="36486"/>
              <exon start="36374" stop="36303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36686" stop="36486"/>
              <exon start="36374" stop="35917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36621" stop="36486"/>
              <exon start="36374" stop="36094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267930" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36611" stop="36486"/>
              <exon start="36374" stop="36021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36611" stop="36486"/>
              <exon start="36374" stop="36021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340624" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCATTCCAGAACCCACCACCCCAAACCCCCAACCACACCTTCTTAAGCAGAGTGTTGTAACAAAGAGTTGAGTGAAAAAATCATTAGGTGCAAAATGGCTCTACAAGCAGCATCTTTGCTTCCATCTGCATTTTCTCTACACAAAGAG : GGTAAAACATCAAGTGCTAATCTCAAGGACAGTAGCTTCTTTGGAGTTGCATTGTCTTGCAATCTGAAATCTAAATTTACTCCTGCTGCAGGAAACAAG : GAATTGACAAGGAAATTAGCGATTGTACCTATTAGAGCACAAACAGCTGCTACCACTCCTGCAATCACCCAGTCTACCTCAGGACAGAAGAAAACACTCAGGAAAGGCAATGTGATAATCACCGGAGCCTCCTCTGGTTTAGGACTAGCTACAGCAAAGGCTATAGGCGAGTCAGGAGACTGGCACGTTATAATGGCCTGTAGGGACTTCCTCAAGGCTGAAAAAGCAGCAAAATCACTTGGCATTCCGAAGGAAAATTACACTGTCATGCATCTGGATCTCGCTTCCCTTGAAAGTGTCCGCCAATTTGTAGATAATTTCCGACGTTCAGGGAGGCCACTTGATGCGCTAGTATGCAATGCTGCAGTGTACTTGCCAACTGCTAAAGAGCCAACTTTTACGGCTGATGGATTTGAGCTTAGTGTGGGCACCAACCATCTCGGACATTTCCTTCTTTCAAGGTTGCTGCTAGATGACCTCAAGCAATCAGATTATCCACAAAAGCGCCTTATAATTGTTGGCTCCATAACAG : GAAACACAAATACTTTGGCTGGAAATGTGCCACCAAAGGCTAATCTTGGAGATCTACGAGGACTTTCAGGAGGGTTGAATAGTTTAAACTGCTCACCCATGATTGATGGAGGAGAATTTGATGGTGCCAAAGCCTATAAAGACAGCAAAGTCTGTAACATGCTTACCATGCAAGAGTACCATAGGCGTTTCCACGAGGAGACTGGCATTGCCTTTGCTTCCCTCTATCCCGGCTGCATTGCTGAAACTGGTTTATTTAGGAATCACATTCCCTTGTTCAGGACTCTCTTCCCACCATTTCAAAAGTACATAACCAAAGGCTATGTATCTGAAGAAGAAGCAGGAAAAAGACTTGCACAG : GTAGTACGTGATCCAAGTCTTTCAAAATCCGGTGTCTACTGGAGTTGGAACAGTACCTCCTCCTCTTTTGAGAACCAGCTGTCGAAGGAAGCCAGTGATGCAGAGAAGGCACGCAAGCTATGGGAGGTCAGTGAGAAGCTCGTTGGACTGGCTTAAATGGAGTGGCAAGGGTGCGACTTGTTTTCCCATCCAAGTCAGGAGAAGATGTATATATGAGATCACCAGAGTTCTTTTATCAAAATACTTATTGGTATTTGTTGTTGATTGATTTTACCAACAGAGTTTTCAGGTAGGTAGGCAACAAGTTCTTGTAATGATATGGACATCTCAATTCTAAGACCATGTGCATAACCAGCAACTCTTAAACTGGAGGGACCTGCAAAGAATTGATCAGATCAGAGAGTATATGATCCATCATGTTATTTACCAAATTTAGATAAGACGACTGGTATTTCTAAATATCCATTAATA : TAAAATAAGCA</gDNA_template>
            <first_frame> D  H  S  R  T  H  H  P  K  P  P  T  T  P  S  *  A  E  C  C  N  K  E  L  S  E  K  I  I  R  C  K  M  A  L  Q  A  A  S  L  L  P  S  A  F  S  L  H  K  E  :  G  K  T  S  S  A  N  L  K  D  S  S  F  F  G  V  A  L  S  C  N  L  K  S  K  F  T  P  A  A  G  N  K  :  E  L  T  R  K  L  A  I  V  P  I  R  A  Q  T  A  A  T  T  P  A  I  T  Q  S  T  S  G  Q  K  K  T  L  R  K  G  N  V  I  I  T  G  A  S  S  G  L  G  L  A  T  A  K  A  I  G  E  S  G  D  W  H  V  I  M  A  C  R  D  F  L  K  A  E  K  A  A  K  S  L  G  I  P  K  E  N  Y  T  V  M  H  L  D  L  A  S  L  E  S  V  R  Q  F  V  D  N  F  R  R  S  G  R  P  L  D  A  L  V  C  N  A  A  V  Y  L  P  T  A  K  E  P  T  F  T  A  D  G  F  E  L  S  V  G  T  N  H  L  G  H  F  L  L  S  R  L  L  L  D  D  L  K  Q  S  D  Y  P  Q  K  R  L  I  I  V  G  S  I  T   : G  N  T  N  T  L  A  G  N  V  P  P  K  A  N  L  G  D  L  R  G  L  S  G  G  L  N  S  L  N  C  S  P  M  I  D  G  G  E  F  D  G  A  K  A  Y  K  D  S  K  V  C  N  M  L  T  M  Q  E  Y  H  R  R  F  H  E  E  T  G  I  A  F  A  S  L  Y  P  G  C  I  A  E  T  G  L  F  R  N  H  I  P  L  F  R  T  L  F  P  P  F  Q  K  Y  I  T  K  G  Y  V  S  E  E  E  A  G  K  R  L  A  Q  :  V  V  R  D  P  S  L  S  K  S  G  V  Y  W  S  W  N  S  T  S  S  S  F  E  N  Q  L  S  K  E  A  S  D  A  E  K  A  R  K  L  W  E  V  S  E  K  L  V  G  L  A  *  M  E  W  Q  G  C  D  L  F  S  H  P  S  Q  E  K  M  Y  I  *  D  H  Q  S  S  F  I  K  I  L  I  G  I  C  C  *  L  I  L  P  T  E  F  S  G  R  *  A  T  S  S  C  N  D  M  D  I  S  I  L  R  P  C  A  *  P  A  T  L  K  L  E  G  P  A  K  N  *  S  D  Q  R  V  Y  D  P  S  C  Y  L  P  N  L  D  K  T  T  G  I  S  K  Y  P  L  I  :  *  N  K   </first_frame>
            <second_frame>  I  I  P  E  P  T  T  P  N  P  Q  P  H  L  L  K  Q  S  V  V  T  K  S  *  V  K  K  S  L  G  A  K  W  L  Y  K  Q  H  L  C  F  H  L  H  F  L  Y  T  K  R :   V  K  H  Q  V  L  I  S  R  T  V  A  S  L  E  L  H  C  L  A  I  *  N  L  N  L  L  L  L  Q  E  T  R :   N  *  Q  G  N  *  R  L  Y  L  L  E  H  K  Q  L  L  P  L  L  Q  S  P  S  L  P  Q  D  R  R  K  H  S  G  K  A  M  *  *  S  P  E  P  P  L  V  *  D  *  L  Q  Q  R  L  *  A  S  Q  E  T  G  T  L  *  W  P  V  G  T  S  S  R  L  K  K  Q  Q  N  H  L  A  F  R  R  K  I  T  L  S  C  I  W  I  S  L  P  L  K  V  S  A  N  L  *  I  I  S  D  V  Q  G  G  H  L  M  R  *  Y  A  M  L  Q  C  T  C  Q  L  L  K  S  Q  L  L  R  L  M  D  L  S  L  V  W  A  P  T  I  S  D  I  S  F  F  Q  G  C  C  *  M  T  S  S  N  Q  I  I  H  K  S  A  L  *  L  L  A  P  *  Q  :  E  T  Q  I  L  W  L  E  M  C  H  Q  R  L  I  L  E  I  Y  E  D  F  Q  E  G  *  I  V  *  T  A  H  P  *  L  M  E  E  N  L  M  V  P  K  P  I  K  T  A  K  S  V  T  C  L  P  C  K  S  T  I  G  V  S  T  R  R  L  A  L  P  L  L  P  S  I  P  A  A  L  L  K  L  V  Y  L  G  I  T  F  P  C  S  G  L  S  S  H  H  F  K  S  T  *  P  K  A  M  Y  L  K  K  K  Q  E  K  D  L  H  R :   *  Y  V  I  Q  V  F  Q  N  P  V  S  T  G  V  G  T  V  P  P  P  L  L  R  T  S  C  R  R  K  P  V  M  Q  R  R  H  A  S  Y  G  R  S  V  R  S  S  L  D  W  L  K  W  S  G  K  G  A  T  C  F  P  I  Q  V  R  R  R  C  I  Y  E  I  T  R  V  L  L  S  K  Y  L  L  V  F  V  V  D  *  F  Y  Q  Q  S  F  Q  V  G  R  Q  Q  V  L  V  M  I  W  T  S  Q  F  *  D  H  V  H  N  Q  Q  L  L  N  W  R  D  L  Q  R  I  D  Q  I  R  E  Y  M  I  H  H  V  I  Y  Q  I  *  I  R  R  L  V  F  L  N  I  H  *  Y :   K  I  S  </second_frame>
            <third_frame>   S  F  Q  N  P  P  P  Q  T  P  N  H  T  F  L  S  R  V  L  *  Q  R  V  E  *  K  N  H  *  V  Q  N  G  S  T  S  S  I  F  A  S  I  C  I  F  S  T  Q  R   : G  *  N  I  K  C  *  S  Q  G  Q  *  L  L  W  S  C  I  V  L  Q  S  E  I  *  I  Y  S  C  C  R  K  Q   : G  I  D  K  E  I  S  D  C  T  Y  *  S  T  N  S  C  Y  H  S  C  N  H  P  V  Y  L  R  T  E  E  N  T  Q  E  R  Q  C  D  N  H  R  S  L  L  W  F  R  T  S  Y  S  K  G  Y  R  R  V  R  R  L  A  R  Y  N  G  L  *  G  L  P  Q  G  *  K  S  S  K  I  T  W  H  S  E  G  K  L  H  C  H  A  S  G  S  R  F  P  *  K  C  P  P  I  C  R  *  F  P  T  F  R  E  A  T  *  C  A  S  M  Q  C  C  S  V  L  A  N  C  *  R  A  N  F  Y  G  *  W  I  *  A  *  C  G  H  Q  P  S  R  T  F  P  S  F  K  V  A  A  R  *  P  Q  A  I  R  L  S  T  K  A  P  Y  N  C  W  L  H  N  R :   K  H  K  Y  F  G  W  K  C  A  T  K  G  *  S  W  R  S  T  R  T  F  R  R  V  E  *  F  K  L  L  T  H  D  *  W  R  R  I  *  W  C  Q  S  L  *  R  Q  Q  S  L  *  H  A  Y  H  A  R  V  P  *  A  F  P  R  G  D  W  H  C  L  C  F  P  L  S  R  L  H  C  *  N  W  F  I  *  E  S  H  S  L  V  Q  D  S  L  P  T  I  S  K  V  H  N  Q  R  L  C  I  *  R  R  S  R  K  K  T  C  T   : G  S  T  *  S  K  S  F  K  I  R  C  L  L  E  L  E  Q  Y  L  L  L  F  *  E  P  A  V  E  G  S  Q  *  C  R  E  G  T  Q  A  M  G  G  Q  *  E  A  R  W  T  G  L  N  G  V  A  R  V  R  L  V  F  P  S  K  S  G  E  D  V  Y  M  R  S  P  E  F  F  Y  Q  N  T  Y  W  Y  L  L  L  I  D  F  T  N  R  V  F  R  *  V  G  N  K  F  L  *  *  Y  G  H  L  N  S  K  T  M  C  I  T  S  N  S  *  T  G  G  T  C  K  E  L  I  R  S  E  S  I  *  S  I  M  L  F  T  K  F  R  *  D  D  W  Y  F  *  I  S  I  N   : I  K  *  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0019I13.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38964" stop="38863"/>
                    <exon start="38780" stop="38682"/>
                    <exon start="37929" stop="37398"/>
                    <exon start="36844" stop="36486"/>
                    <exon start="36374" stop="36219"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AECCNKELSEKIIRCKMALQAASLLPSAFSLHKEGKTSSANLKDSSFFGVALSCNLKSKFTPAAGNKELTRKLAIVPIRAQTAATTPAITQSTSGQKKTLRKGNVIITGASSGLGLATAKAIGESGDWHVIMACRDFLKAEKAAKSLGIPKENYTVMHLDLASLESVRQFVDNFRRSGRPLDALVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKQSDYPQKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLSGGLNSLNCSPMIDGGEFDGAKAYKDSKVCNMLTMQEYHRRFHEETGIAFASLYPGCIAETGLFRNHIPLFRTLFPPFQKYITKGYVSEEEAGKRLAQVVRDPSLSKSGVYWSWNSTSSSFENQLSKEASDAEKARKLWEVSEKLVGLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="60863" PGL_stop="60044"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60863" e_stop="60044"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="60863" e_stop="60044" e_length="820"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60863" stop="60044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543222" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAAGAACGAGAAGGAAATCAGGTTCTACTGTGTCGGACATTGATAGTACAATCTACTACGGAGACTTACCCGAGAGTTCTCCAGATAGCAAACCAAAACGCCAAAACAGACGAAGGAGTACAAGAAAGAGTTCTGTTTCGGAAAGTCAGAGATCTTATCGTACATTTGCACATGATACAAAAGATCAACCTTGCTATGTCAAATTCAGAAGCACAATGACTTTTGTCAAGTGCATCGACGATCATTCCAGATGCAACGAGACAATGGAGAATCATTGCAGTTTGGAACATCCATGTTATTACTGGATCACTGATAAGAAAGGCAACGTGGAATCTCCTCTTCGCGTTCCAAGGAGGAGAGTCAAAACCACAAAGGACTACATCAACCAAGATCAAAATGTTGAATCAATGAACGAACATTCTGTAAATCGCGATACTGAGGAGGTATTGAAGAGCCAAGAAACATGTGATTCGACAATGTATTCAACGTCAAGAATGACATATCAAAGGGCAAGAGACGAAAATCAGGCCCCTTATTTGAGAGCAATGACTCTGCCTATTGAAAGGCCTAAAGATTGCCTCGTAGACAACTTTCTTCGATCAAGTTCCTTCCCGGTTCAAGAGCCTGAAAATGGATCATACGAAAATAGACATGTCCATCCTAAGCTACCAAACTACGACGAAATAGAAGCTACATTCTTGGCTCTCAAGAAAGAGAAATTGCAAAAGAAATGCTAGCGTAAAATCGACCATGAGTTAGCTATATTTTTCTATGTTCTTTGGTCATATAACTAGCAGAAGCATATTTAGATTGTAAT</gDNA_template>
            <first_frame> E  K  E  R  E  G  N  Q  V  L  L  C  R  T  L  I  V  Q  S  T  T  E  T  Y  P  R  V  L  Q  I  A  N  Q  N  A  K  T  D  E  G  V  Q  E  R  V  L  F  R  K  V  R  D  L  I  V  H  L  H  M  I  Q  K  I  N  L  A  M  S  N  S  E  A  Q  *  L  L  S  S  A  S  T  I  I  P  D  A  T  R  Q  W  R  I  I  A  V  W  N  I  H  V  I  T  G  S  L  I  R  K  A  T  W  N  L  L  F  A  F  Q  G  G  E  S  K  P  Q  R  T  T  S  T  K  I  K  M  L  N  Q  *  T  N  I  L  *  I  A  I  L  R  R  Y  *  R  A  K  K  H  V  I  R  Q  C  I  Q  R  Q  E  *  H  I  K  G  Q  E  T  K  I  R  P  L  I  *  E  Q  *  L  C  L  L  K  G  L  K  I  A  S  *  T  T  F  F  D  Q  V  P  S  R  F  K  S  L  K  M  D  H  T  K  I  D  M  S  I  L  S  Y  Q  T  T  T  K  *  K  L  H  S  W  L  S  R  K  R  N  C  K  R  N  A  S  V  K  S  T  M  S  *  L  Y  F  S  M  F  F  G  H  I  T  S  R  S  I  F  R  L  *  </first_frame>
            <second_frame>  K  K  N  E  K  E  I  R  F  Y  C  V  G  H  *  *  Y  N  L  L  R  R  L  T  R  E  F  S  R  *  Q  T  K  T  P  K  Q  T  K  E  Y  K  K  E  F  C  F  G  K  S  E  I  L  S  Y  I  C  T  *  Y  K  R  S  T  L  L  C  Q  I  Q  K  H  N  D  F  C  Q  V  H  R  R  S  F  Q  M  Q  R  D  N  G  E  S  L  Q  F  G  T  S  M  L  L  L  D  H  *  *  E  R  Q  R  G  I  S  S  S  R  S  K  E  E  S  Q  N  H  K  G  L  H  Q  P  R  S  K  C  *  I  N  E  R  T  F  C  K  S  R  Y  *  G  G  I  E  E  P  R  N  M  *  F  D  N  V  F  N  V  K  N  D  I  S  K  G  K  R  R  K  S  G  P  L  F  E  S  N  D  S  A  Y  *  K  A  *  R  L  P  R  R  Q  L  S  S  I  K  F  L  P  G  S  R  A  *  K  W  I  I  R  K  *  T  C  P  S  *  A  T  K  L  R  R  N  R  S  Y  I  L  G  S  Q  E  R  E  I  A  K  E  M  L  A  *  N  R  P  *  V  S  Y  I  F  L  C  S  L  V  I  *  L  A  E  A  Y  L  D  C  N </second_frame>
            <third_frame>   K  R  T  R  R  K  S  G  S  T  V  S  D  I  D  S  T  I  Y  Y  G  D  L  P  E  S  S  P  D  S  K  P  K  R  Q  N  R  R  R  S  T  R  K  S  S  V  S  E  S  Q  R  S  Y  R  T  F  A  H  D  T  K  D  Q  P  C  Y  V  K  F  R  S  T  M  T  F  V  K  C  I  D  D  H  S  R  C  N  E  T  M  E  N  H  C  S  L  E  H  P  C  Y  Y  W  I  T  D  K  K  G  N  V  E  S  P  L  R  V  P  R  R  R  V  K  T  T  K  D  Y  I  N  Q  D  Q  N  V  E  S  M  N  E  H  S  V  N  R  D  T  E  E  V  L  K  S  Q  E  T  C  D  S  T  M  Y  S  T  S  R  M  T  Y  Q  R  A  R  D  E  N  Q  A  P  Y  L  R  A  M  T  L  P  I  E  R  P  K  D  C  L  V  D  N  F  L  R  S  S  S  F  P  V  Q  E  P  E  N  G  S  Y  E  N  R  H  V  H  P  K  L  P  N  Y  D  E  I  E  A  T  F  L  A  L  K  K  E  K  L  Q  K  K  C  *  R  K  I  D  H  E  L  A  I  F  F  Y  V  L  W  S  Y  N  *  Q  K  H  I  *  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0019I13.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60861" stop="60124"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRTRRKSGSTVSDIDSTIYYGDLPESSPDSKPKRQNRRRSTRKSSVSESQRSYRTFAHDTKDQPCYVKFRSTMTFVKCIDDHSRCNETMENHCSLEHPCYYWITDKKGNVESPLRVPRRRVKTTKDYINQDQNVESMNEHSVNRDTEEVLKSQETCDSTMYSTSRMTYQRARDENQAPYLRAMTLPIERPKDCLVDNFLRSSSFPVQEPENGSYENRHVHPKLPNYDEIEATFLALKKEKLQKKC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="63041" PGL_stop="62001"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63041" e_stop="62922"/>
            <exon e_start="62697" e_stop="62565"/>
            <exon e_start="62329" e_stop="62001"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.827" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63041" e_stop="62922" e_length="120"/>
          </exon>
          <intron i_serial="1" don_prob="0.827" acc_prob="0.994">
            <gDNA_intron_boundary i_start="62921" i_stop="62698" i_length="224"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62697" e_stop="62565" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.988">
            <gDNA_intron_boundary i_start="62564" i_stop="62330" i_length="235"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62329" e_stop="62001" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63041" stop="62922"/>
              <exon start="62697" stop="62565"/>
              <exon start="62329" stop="62001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303744" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTTAATAAATATCACAAAAGTGTGAATTTGTCACAAGGCTAATCATTTTGTCAGCTTGGAGGAACTCAACAAACATGTTTAATTTACTCTTTGGTTGGAGAAAAGCTTCTAAATG : TAAGAATTTGATTAGAAGGGTTCAAAGACGGATTAAGCTATTGAAGAACAAGAGAAGTTGCATTATCAAACAATTGAGGGATGATTTATCTGAGTTACTTAGAAATGGACATTACGAAATTGTCATTGATAGG : GTTGAACAGCTTTCGTTGGATGAACGAAAGGTTGCAGTGTATGATTTACTGGAGAGTTACTGTGAATTTATAATGATCAACCTTCCGTGTATTCGAAAAAACAAGCAAGAAAACACAAACACTTCAATCTAAATTCAATGTTATACAACTATAATGAATAATGATTTTTATGTTTGTTTTGTTTTTCTCAGGGACTGTCCTGATGATATCAATGAAGCAGTGTCAAGTCTCATTTTTGCATCAGCAAGACTCGGTGATGTGCCTGAGCTAGCTGCAATTCGGAAGTTTTTTAGTGAAAGATATGGTCAGAGATTCGAAAAATCTGCACT</gDNA_template>
            <first_frame> F  F  L  I  N  I  T  K  V  *  I  C  H  K  A  N  H  F  V  S  L  E  E  L  N  K  H  V  *  F  T  L  W  L  E  K  S  F  *  M  :  *  E  F  D  *  K  G  S  K  T  D  *  A  I  E  E  Q  E  K  L  H  Y  Q  T  I  E  G  *  F  I  *  V  T  *  K  W  T  L  R  N  C  H  *  *   : G  *  T  A  F  V  G  *  T  K  G  C  S  V  *  F  T  G  E  L  L  *  I  Y  N  D  Q  P  S  V  Y  S  K  K  Q  A  R  K  H  K  H  F  N  L  N  S  M  L  Y  N  Y  N  E  *  *  F  L  C  L  F  C  F  S  Q  G  L  S  *  *  Y  Q  *  S  S  V  K  S  H  F  C  I  S  K  T  R  *  C  A  *  A  S  C  N  S  E  V  F  *  *  K  I  W  S  E  I  R  K  I  C  T </first_frame>
            <second_frame>  F  F  *  *  I  S  Q  K  C  E  F  V  T  R  L  I  I  L  S  A  W  R  N  S  T  N  M  F  N  L  L  F  G  W  R  K  A  S  K  C :   K  N  L  I  R  R  V  Q  R  R  I  K  L  L  K  N  K  R  S  C  I  I  K  Q  L  R  D  D  L  S  E  L  L  R  N  G  H  Y  E  I  V  I  D  R  :  V  E  Q  L  S  L  D  E  R  K  V  A  V  Y  D  L  L  E  S  Y  C  E  F  I  M  I  N  L  P  C  I  R  K  N  K  Q  E  N  T  N  T  S  I  *  I  Q  C  Y  T  T  I  M  N  N  D  F  Y  V  C  F  V  F  L  R  D  C  P  D  D  I  N  E  A  V  S  S  L  I  F  A  S  A  R  L  G  D  V  P  E  L  A  A  I  R  K  F  F  S  E  R  Y  G  Q  R  F  E  K  S  A   </second_frame>
            <third_frame>   F  F  N  K  Y  H  K  S  V  N  L  S  Q  G  *  S  F  C  Q  L  G  G  T  Q  Q  T  C  L  I  Y  S  L  V  G  E  K  L  L  N   : V  R  I  *  L  E  G  F  K  D  G  L  S  Y  *  R  T  R  E  V  A  L  S  N  N  *  G  M  I  Y  L  S  Y  L  E  M  D  I  T  K  L  S  L  I  G :   L  N  S  F  R  W  M  N  E  R  L  Q  C  M  I  Y  W  R  V  T  V  N  L  *  *  S  T  F  R  V  F  E  K  T  S  K  K  T  Q  T  L  Q  S  K  F  N  V  I  Q  L  *  *  I  M  I  F  M  F  V  L  F  F  S  G  T  V  L  M  I  S  M  K  Q  C  Q  V  S  F  L  H  Q  Q  D  S  V  M  C  L  S  *  L  Q  F  G  S  F  L  V  K  D  M  V  R  D  S  K  N  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0019I13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63028" stop="62922"/>
                    <exon start="62697" stop="62565"/>
                    <exon start="62329" stop="62198"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISQKCEFVTRLIILSAWRNSTNMFNLLFGWRKASKCKNLIRRVQRRIKLLKNKRSCIIKQLRDDLSELLRNGHYEIVIDRVEQLSLDERKVAVYDLLESYCEFIMINLPCIRKNKQENTNTSI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0019I13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62197" stop="62003"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQCYTTIMNNDFYVCFVFLRDCPDDINEAVSSLIFASARLGDVPELAAIRKFFSERYGQRFEKSA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="65928" PGL_stop="65201"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65928" e_stop="65201"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="65928" e_stop="65201" e_length="728"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65928" stop="65201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65927" stop="65466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362134" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCTTCCTCCTCTCCTCCACGGTACTCCGCGATGGGGGAATATGGAAGGCCTCCGCCTTATGGCGGAGAATATTACTATGCAGAAAGGCGTAGAGGAGGAAATTTCTGCGTTAGATGCATTTGTTGTTGCTATTGCGTCCTATTTTTACTCATAATTATTCTAGCCTCGATAGCCTTCTATTTCTACATGTACTACAAACCTAAAATGCCTACGTACGATTTTCAATCCCTTGATGTTAAGGATTTCAGATATCAACCCGACTTCAGTGTGAATGCAGATCTTATCATAACGATGAAAACAGATAATCCCAACACAGCTATAGGGTTTATTTACGGGGAAGGTAGCTCCGTTAACGTGACATATAGCGATTCGAATATTTGTACGGGGAAATTACCTAGTTTTTATCAAGGTCAAAAAAATACAACTATATTCCAAATTGAATTAAAAGGTAAAAGTACATTTGGATCAGGGCTATATGAGGCATTTCAAGAAAATGAAAAAAATGGTAAAATTCCATTAAAGGTAATGATTAAGGTACCTGTGCAAATTATTTTGGGAGATATTAAATTAAAACAATTTAATGTGTTTGCAAATGTTACATTAACTGTTCATGATTTGAAGCCTGGCAAAAAACCTGAGGTTGAACATAGTCAACCAACATTCGATGTTAAATTCTGATAAAATCTATCTTCTCTGTTCTTATCTGGCGTTCTATGTGTTTTTTTT</gDNA_template>
            <first_frame> L  L  P  P  L  L  H  G  T  P  R  W  G  N  M  E  G  L  R  L  M  A  E  N  I  T  M  Q  K  G  V  E  E  E  I  S  A  L  D  A  F  V  V  A  I  A  S  Y  F  Y  S  *  L  F  *  P  R  *  P  S  I  S  T  C  T  T  N  L  K  C  L  R  T  I  F  N  P  L  M  L  R  I  S  D  I  N  P  T  S  V  *  M  Q  I  L  S  *  R  *  K  Q  I  I  P  T  Q  L  *  G  L  F  T  G  K  V  A  P  L  T  *  H  I  A  I  R  I  F  V  R  G  N  Y  L  V  F  I  K  V  K  K  I  Q  L  Y  S  K  L  N  *  K  V  K  V  H  L  D  Q  G  Y  M  R  H  F  K  K  M  K  K  M  V  K  F  H  *  R  *  *  L  R  Y  L  C  K  L  F  W  E  I  L  N  *  N  N  L  M  C  L  Q  M  L  H  *  L  F  M  I  *  S  L  A  K  N  L  R  L  N  I  V  N  Q  H  S  M  L  N  S  D  K  I  Y  L  L  C  S  Y  L  A  F  Y  V  F  F   </first_frame>
            <second_frame>  S  F  L  L  S  S  T  V  L  R  D  G  G  I  W  K  A  S  A  L  W  R  R  I  L  L  C  R  K  A  *  R  R  K  F  L  R  *  M  H  L  L  L  L  L  R  P  I  F  T  H  N  Y  S  S  L  D  S  L  L  F  L  H  V  L  Q  T  *  N  A  Y  V  R  F  S  I  P  *  C  *  G  F  Q  I  S  T  R  L  Q  C  E  C  R  S  Y  H  N  D  E  N  R  *  S  Q  H  S  Y  R  V  Y  L  R  G  R  *  L  R  *  R  D  I  *  R  F  E  Y  L  Y  G  E  I  T  *  F  L  S  R  S  K  K  Y  N  Y  I  P  N  *  I  K  R  *  K  Y  I  W  I  R  A  I  *  G  I  S  R  K  *  K  K  W  *  N  S  I  K  G  N  D  *  G  T  C  A  N  Y  F  G  R  Y  *  I  K  T  I  *  C  V  C  K  C  Y  I  N  C  S  *  F  E  A  W  Q  K  T  *  G  *  T  *  S  T  N  I  R  C  *  I  L  I  K  S  I  F  S  V  L  I  W  R  S  M  C  F  F  </second_frame>
            <third_frame>   P  S  S  S  P  P  R  Y  S  A  M  G  E  Y  G  R  P  P  P  Y  G  G  E  Y  Y  Y  A  E  R  R  R  G  G  N  F  C  V  R  C  I  C  C  C  Y  C  V  L  F  L  L  I  I  I  L  A  S  I  A  F  Y  F  Y  M  Y  Y  K  P  K  M  P  T  Y  D  F  Q  S  L  D  V  K  D  F  R  Y  Q  P  D  F  S  V  N  A  D  L  I  I  T  M  K  T  D  N  P  N  T  A  I  G  F  I  Y  G  E  G  S  S  V  N  V  T  Y  S  D  S  N  I  C  T  G  K  L  P  S  F  Y  Q  G  Q  K  N  T  T  I  F  Q  I  E  L  K  G  K  S  T  F  G  S  G  L  Y  E  A  F  Q  E  N  E  K  N  G  K  I  P  L  K  V  M  I  K  V  P  V  Q  I  I  L  G  D  I  K  L  K  Q  F  N  V  F  A  N  V  T  L  T  V  H  D  L  K  P  G  K  K  P  E  V  E  H  S  Q  P  T  F  D  V  K  F  *  *  N  L  S  S  L  F  L  S  G  V  L  C  V  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0019I13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65926" stop="65249"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSSSPPRYSAMGEYGRPPPYGGEYYYAERRRGGNFCVRCICCCYCVLFLLIIILASIAFYFYMYYKPKMPTYDFQSLDVKDFRYQPDFSVNADLIITMKTDNPNTAIGFIYGEGSSVNVTYSDSNICTGKLPSFYQGQKNTTIFQIELKGKSTFGSGLYEAFQENEKNGKIPLKVMIKVPVQIILGDIKLKQFNVFANVTLTVHDLKPGKKPEVEHSQPTFDVKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="67774" PGL_stop="67078"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67774" e_stop="67078"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="67774" e_stop="67078" e_length="697"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67774" stop="67263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67743" stop="67260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67666" stop="67262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67580" stop="67129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67495" stop="67078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAAAACCAAAAAAAGGAAAAAGGAAAAAATAAAAGTGGTGGTCCTCTATCCATAAGGAGATAGGTCCACCACCAAAAAAAAATCCCCTAGATTATTCTAATTTAATTTCCTCCTCCTCGTTCTCGTTCTCATCCTCATTCTCGTCTTTCTATGCATCGTCCACCACCCTATGGGATGGCAGGTGATGGAAGGCCCCCGCCTTATCCCTATGGGGGCGGGGAATATTATCCTCAAGAAAGGCGAAGAGGAGGAAATGTTTGTGTTAGATGCATTTGTTGTTGTTATTGCGTCGTATTTTTCATTGTCCTTGTCATAACGGTAATTTTTTTGTATCTTTTCACAGTCTACGATCCGAAAGCTCCAATTTACAAATTTGAAGCCCTAGATGTTAAGGAATTCGAATATAATGATTCCAACATCAATGCAGATCTTATCATAACGTTGAGAGCTGATAATCCCAACAAGGCCATAGGTTTTATTTACGAGGAAGCTAACACCTTCAATGTTACATATAGTGGTTCAACAATATGTTCAGGAAAATTTCCATCATTTCATCACGGTCAAAAGAATGTAACTATGTTACAAATTGAATTAAAGGGTAAAAATCCATTTGCAAAAAGTCTTTATGAGTCATTACAAGTTAGTGAAAGCCATGGAAAAGTTCCTTTAACAATATTGGCTAAGGTACCCTTTAGA</gDNA_template>
            <first_frame> L  K  P  K  K  G  K  R  K  K  *  K  W  W  S  S  I  H  K  E  I  G  P  P  P  K  K  N  P  L  D  Y  S  N  L  I  S  S  S  S  F  S  F  S  S  S  F  S  S  F  Y  A  S  S  T  T  L  W  D  G  R  *  W  K  A  P  A  L  S  L  W  G  R  G  I  L  S  S  R  K  A  K  R  R  K  C  L  C  *  M  H  L  L  L  L  L  R  R  I  F  H  C  P  C  H  N  G  N  F  F  V  S  F  H  S  L  R  S  E  S  S  N  L  Q  I  *  S  P  R  C  *  G  I  R  I  *  *  F  Q  H  Q  C  R  S  Y  H  N  V  E  S  *  *  S  Q  Q  G  H  R  F  Y  L  R  G  S  *  H  L  Q  C  Y  I  *  W  F  N  N  M  F  R  K  I  S  I  I  S  S  R  S  K  E  C  N  Y  V  T  N  *  I  K  G  *  K  S  I  C  K  K  S  L  *  V  I  T  S  *  *  K  P  W  K  S  S  F  N  N  I  G  *  G  T  L  *  </first_frame>
            <second_frame>  *  N  Q  K  K  E  K  G  K  N  K  S  G  G  P  L  S  I  R  R  *  V  H  H  Q  K  K  I  P  *  I  I  L  I  *  F  P  P  P  R  S  R  S  H  P  H  S  R  L  S  M  H  R  P  P  P  Y  G  M  A  G  D  G  R  P  P  P  Y  P  Y  G  G  G  E  Y  Y  P  Q  E  R  R  R  G  G  N  V  C  V  R  C  I  C  C  C  Y  C  V  V  F  F  I  V  L  V  I  T  V  I  F  L  Y  L  F  T  V  Y  D  P  K  A  P  I  Y  K  F  E  A  L  D  V  K  E  F  E  Y  N  D  S  N  I  N  A  D  L  I  I  T  L  R  A  D  N  P  N  K  A  I  G  F  I  Y  E  E  A  N  T  F  N  V  T  Y  S  G  S  T  I  C  S  G  K  F  P  S  F  H  H  G  Q  K  N  V  T  M  L  Q  I  E  L  K  G  K  N  P  F  A  K  S  L  Y  E  S  L  Q  V  S  E  S  H  G  K  V  P  L  T  I  L  A  K  V  P  F  R </second_frame>
            <third_frame>   K  T  K  K  R  K  K  E  K  I  K  V  V  V  L  Y  P  *  G  D  R  S  T  T  K  K  K  S  P  R  L  F  *  F  N  F  L  L  L  V  L  V  L  I  L  I  L  V  F  L  C  I  V  H  H  P  M  G  W  Q  V  M  E  G  P  R  L  I  P  M  G  A  G  N  I  I  L  K  K  G  E  E  E  E  M  F  V  L  D  A  F  V  V  V  I  A  S  Y  F  S  L  S  L  S  *  R  *  F  F  C  I  F  S  Q  S  T  I  R  K  L  Q  F  T  N  L  K  P  *  M  L  R  N  S  N  I  M  I  P  T  S  M  Q  I  L  S  *  R  *  E  L  I  I  P  T  R  P  *  V  L  F  T  R  K  L  T  P  S  M  L  H  I  V  V  Q  Q  Y  V  Q  E  N  F  H  H  F  I  T  V  K  R  M  *  L  C  Y  K  L  N  *  R  V  K  I  H  L  Q  K  V  F  M  S  H  Y  K  L  V  K  A  M  E  K  F  L  *  Q  Y  W  L  R  Y  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0019I13.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67668" stop="67078"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPPPRSRSHPHSRLSMHRPPPYGMAGDGRPPPYPYGGGEYYPQERRRGGNVCVRCICCCYCVVFFIVLVITVIFLYLFTVYDPKAPIYKFEALDVKEFEYNDSNINADLIITLRADNPNKAIGFIYEEANTFNVTYSGSTICSGKFPSFHHGQKNVTMLQIELKGKNPFAKSLYESLQVSESHGKVPLTILAKVPFR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="81076" PGL_stop="78651"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81076" e_stop="80921"/>
            <exon e_start="80833" e_stop="80613"/>
            <exon e_start="80472" e_stop="80274"/>
            <exon e_start="79903" e_stop="79818"/>
            <exon e_start="79554" e_stop="79463"/>
            <exon e_start="79372" e_stop="79255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.739" acc_prob="0.695" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81076" e_stop="80921" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80920" i_stop="80834" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80833" e_stop="80613" e_length="221"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="80612" i_stop="80473" i_length="140"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80472" e_stop="80274" e_length="199"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.960">
            <gDNA_intron_boundary i_start="80273" i_stop="79904" i_length="370"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79903" e_stop="79818" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.739" acc_prob="0.695">
            <gDNA_intron_boundary i_start="79817" i_stop="79555" i_length="263"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79554" e_stop="79463" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="79462" i_stop="79373" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="0.924">
            <gDNA_exon_boundary e_start="79372" e_stop="79255" e_length="118"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81076" stop="80921"/>
              <exon start="80833" stop="80613"/>
              <exon start="80472" stop="80274"/>
              <exon start="79903" stop="79818"/>
              <exon start="79554" stop="79463"/>
              <exon start="79372" stop="79338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81075" stop="80921"/>
              <exon start="80833" stop="80613"/>
              <exon start="80472" stop="80446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80691" stop="80613"/>
              <exon start="80472" stop="80274"/>
              <exon start="79903" stop="79818"/>
              <exon start="79554" stop="79463"/>
              <exon start="79372" stop="79344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80463" stop="80274"/>
              <exon start="79903" stop="79818"/>
              <exon start="79554" stop="79463"/>
              <exon start="79372" stop="79255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202460" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAAACAGTTTCTTCAATCTCTTTCTCTCTCTTTCTCTCTGTGTGTTTGTGGTTTTTGAATAATCATGTCAATGGAAAAGGGGTCATTACAATCAAACCTTGATTGTTTCTTGGAATGCACAACACCATTAGTCCCTTCACAGTTTTTGCCTCAG : AGTGAGATTAGAAACCTAAATAGGCTATGGCATCCATGGGAAAGAGAAAAAGTTGAATACTTTACTTTGGGTGATCTTTGGAATTGTTATGATGAATGGAGTGCTTATGGTGCTGGAGTTCCTATTAAAACAGATTCAGCAGAAACATTAGTACAATATTATGTTCCTTATCTTTCTGCTATTCAAATCTTTATCAGCAGATCATCTGTTAATTTTCTCAG : GGAAGAGACAGAATCAAGGGATTCATCGTTTAGCGATTCGTTTAGTGATGAGAGTGAAAGTGAGAAGTTGTCAAGATGGGATGGATGTTCATCTGAAGAAGGTGATAGTCTTTGGCATATGAATGATAGATGGGGTTATCTCTATTTTCAGTACTTTGAGAGATCAACTCCTTATGGAAGAGTCCCTTTGATGGACAAG : ATTAGTGGTTTCGCTGAAAGATACCCTGGATTAATGTCATTGAGAAGTGTAGACCTTTCACCGGCTAGTTGGATGTCAGTTGCTTG : GTATCCGATATATCACATTCCTATGGGAAGAACTATTAAAGACTTGTCAGCATGCTTTCTCACATTCCACACACTTTCTTCTTCTTTTCAAG : ATATGGACCTTGATGATGACATGGAGAATGGCAAAAGAAAACGAAAGGAAGGAGAAAGTATCCCCCTTGCGCCTTTCGGCTTGGGCACTTACAAAATGCAGGGAGATGTGTGGCTTTC</gDNA_template>
            <first_frame> E  K  Q  F  L  Q  S  L  S  L  S  F  S  L  C  V  C  G  F  *  I  I  M  S  M  E  K  G  S  L  Q  S  N  L  D  C  F  L  E  C  T  T  P  L  V  P  S  Q  F  L  P  Q  :  S  E  I  R  N  L  N  R  L  W  H  P  W  E  R  E  K  V  E  Y  F  T  L  G  D  L  W  N  C  Y  D  E  W  S  A  Y  G  A  G  V  P  I  K  T  D  S  A  E  T  L  V  Q  Y  Y  V  P  Y  L  S  A  I  Q  I  F  I  S  R  S  S  V  N  F  L  R :   E  E  T  E  S  R  D  S  S  F  S  D  S  F  S  D  E  S  E  S  E  K  L  S  R  W  D  G  C  S  S  E  E  G  D  S  L  W  H  M  N  D  R  W  G  Y  L  Y  F  Q  Y  F  E  R  S  T  P  Y  G  R  V  P  L  M  D  K  :  I  S  G  F  A  E  R  Y  P  G  L  M  S  L  R  S  V  D  L  S  P  A  S  W  M  S  V  A  W :   Y  P  I  Y  H  I  P  M  G  R  T  I  K  D  L  S  A  C  F  L  T  F  H  T  L  S  S  S  F  Q   : D  M  D  L  D  D  D  M  E  N  G  K  R  K  R  K  E  G  E  S  I  P  L  A  P  F  G  L  G  T  Y  K  M  Q  G  D  V  W  L   </first_frame>
            <second_frame>  R  N  S  F  F  N  L  F  L  S  L  S  L  C  V  F  V  V  F  E  *  S  C  Q  W  K  R  G  H  Y  N  Q  T  L  I  V  S  W  N  A  Q  H  H  *  S  L  H  S  F  C  L  R :   V  R  L  E  T  *  I  G  Y  G  I  H  G  K  E  K  K  L  N  T  L  L  W  V  I  F  G  I  V  M  M  N  G  V  L  M  V  L  E  F  L  L  K  Q  I  Q  Q  K  H  *  Y  N  I  M  F  L  I  F  L  L  F  K  S  L  S  A  D  H  L  L  I  F  S   : G  K  R  Q  N  Q  G  I  H  R  L  A  I  R  L  V  M  R  V  K  V  R  S  C  Q  D  G  M  D  V  H  L  K  K  V  I  V  F  G  I  *  M  I  D  G  V  I  S  I  F  S  T  L  R  D  Q  L  L  M  E  E  S  L  *  W  T  R :   L  V  V  S  L  K  D  T  L  D  *  C  H  *  E  V  *  T  F  H  R  L  V  G  C  Q  L  L   : G  I  R  Y  I  T  F  L  W  E  E  L  L  K  T  C  Q  H  A  F  S  H  S  T  H  F  L  L  L  F  K  :  I  W  T  L  M  M  T  W  R  M  A  K  E  N  E  R  K  E  K  V  S  P  L  R  L  S  A  W  A  L  T  K  C  R  E  M  C  G  F  </second_frame>
            <third_frame>   E  T  V  S  S  I  S  F  S  L  F  L  S  V  C  L  W  F  L  N  N  H  V  N  G  K  G  V  I  T  I  K  P  *  L  F  L  G  M  H  N  T  I  S  P  F  T  V  F  A  S   : E  *  D  *  K  P  K  *  A  M  A  S  M  G  K  R  K  S  *  I  L  Y  F  G  *  S  L  E  L  L  *  *  M  E  C  L  W  C  W  S  S  Y  *  N  R  F  S  R  N  I  S  T  I  L  C  S  L  S  F  C  Y  S  N  L  Y  Q  Q  I  I  C  *  F  S  Q  :  G  R  D  R  I  K  G  F  I  V  *  R  F  V  *  *  *  E  *  K  *  E  V  V  K  M  G  W  M  F  I  *  R  R  *  *  S  L  A  Y  E  *  *  M  G  L  S  L  F  S  V  L  *  E  I  N  S  L  W  K  S  P  F  D  G  Q   : D  *  W  F  R  *  K  I  P  W  I  N  V  I  E  K  C  R  P  F  T  G  *  L  D  V  S  C  L  :  V  S  D  I  S  H  S  Y  G  K  N  Y  *  R  L  V  S  M  L  S  H  I  P  H  T  F  F  F  F  S  R :   Y  G  P  *  *  *  H  G  E  W  Q  K  K  T  K  G  R  R  K  Y  P  P  C  A  F  R  L  G  H  L  Q  N  A  G  R  C  V  A  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0019I13.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81016" stop="80921"/>
                    <exon start="80833" stop="80613"/>
                    <exon start="80472" stop="80274"/>
                    <exon start="79903" stop="79818"/>
                    <exon start="79554" stop="79463"/>
                    <exon start="79372" stop="79257"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>810</number_coding_nucleotides>
                  <number_encoded_amino_acids>270</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIMSMEKGSLQSNLDCFLECTTPLVPSQFLPQSEIRNLNRLWHPWEREKVEYFTLGDLWNCYDEWSAYGAGVPIKTDSAETLVQYYVPYLSAIQIFISRSSVNFLREETESRDSSFSDSFSDESESEKLSRWDGCSSEEGDSLWHMNDRWGYLYFQYFERSTPYGRVPLMDKISGFAERYPGLMSLRSVDLSPASWMSVAWYPIYHIPMGRTIKDLSACFLTFHTLSSSFQDMDLDDDMENGKRKRKEGESIPLAPFGLGTYKMQGDVWL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="79994" e_stop="79978"/>
            <exon e_start="79903" e_stop="79818"/>
            <exon e_start="79554" e_stop="79463"/>
            <exon e_start="79372" e_stop="78651"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.918" acc_prob="0.960" e_score="0.647"/>
          <exon-intron don_prob="0.739" acc_prob="0.695" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.647">
            <gDNA_exon_boundary e_start="79994" e_stop="79978" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.918" acc_prob="0.960">
            <gDNA_intron_boundary i_start="79977" i_stop="79904" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79903" e_stop="79818" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.739" acc_prob="0.695">
            <gDNA_intron_boundary i_start="79817" i_stop="79555" i_length="263"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79554" e_stop="79463" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="79462" i_stop="79373" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="79372" e_stop="78651" e_length="722"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79994" stop="79978"/>
              <exon start="79903" stop="79818"/>
              <exon start="79554" stop="79463"/>
              <exon start="79372" stop="79001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79220" stop="78651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303699" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCATTTGAAGCATGTG : ATTAGTGGTTTCGCTGAAAGATACCCTGGATTAATGTCATTGAGAAGTGTAGACCTTTCACCGGCTAGTTGGATGTCAGTTGCTTG : GTATCCGATATATCACATTCCTATGGGAAGAACTATTAAAGACTTGTCAGCATGCTTTCTCACATTCCACACACTTTCTTCTTCTTTTCAAG : ATATGGACCTTGATGATGACATGGAGAATGGCAAAAGAAAACGAAAGGAAGGAGAAAGTATCCCCCTTGCGCCTTTCGGCTTGGGCACTTACAAAATGCAGGGAGATGTGTGGCTTTCAGACAGGAGTGGGAAGGACCAAGAGAGGCTGTCAACACTTTTTAGTGTTGCTGATTCTTGGCTAAAGCAGTTGGGTGTCCAGCACCACGACTTTAACTATTTCATGGGTAGTCGTCGTGGCTAATCACATCTCAAATGAATGAATTCGCGCTTTATAAAACCCCACCAACGGGGCTGAGTAATAACTGGAGTTCCTTTCATTAAAACATAGGCTCTCTGAGGTGTTTTTGGTTTGTTGCTTTCGGTAGCATGAACAGCCTTAGAACTCCCTCCTGTATAAAGGCATTAGTGTTTTACGCGTTGTTCTCCGAATCCTTAGCTTGAGCTTTCTGTCACTTGTTTTTTTTTGTATGTATAGGGAGAGGACTAATTGTGTAGGACTTCATCTTTACATGACTCTTATGATGACCCCTAGTACTTTGTGAGCAATACTTTGCTCCATCTTTTGTATAAATTTTGAAGTACCTTTTTTGGTGTTTCATCTGTGCCTTTTCCTTGTAATATGTTCATGTAAATAGTTCATCTTTCAATAGTAAAAGATTTCATGTACAAGTGCACAAAAAAAAAGAAAAAGAAAAAGAGTTGTTGTGTTGACATTGAATCT</gDNA_template>
            <first_frame> S  I  *  S  M  * :   L  V  V  S  L  K  D  T  L  D  *  C  H  *  E  V  *  T  F  H  R  L  V  G  C  Q  L  L   : G  I  R  Y  I  T  F  L  W  E  E  L  L  K  T  C  Q  H  A  F  S  H  S  T  H  F  L  L  L  F  K  :  I  W  T  L  M  M  T  W  R  M  A  K  E  N  E  R  K  E  K  V  S  P  L  R  L  S  A  W  A  L  T  K  C  R  E  M  C  G  F  Q  T  G  V  G  R  T  K  R  G  C  Q  H  F  L  V  L  L  I  L  G  *  S  S  W  V  S  S  T  T  T  L  T  I  S  W  V  V  V  V  A  N  H  I  S  N  E  *  I  R  A  L  *  N  P  T  N  G  A  E  *  *  L  E  F  L  S  L  K  H  R  L  S  E  V  F  L  V  C  C  F  R  *  H  E  Q  P  *  N  S  L  L  Y  K  G  I  S  V  L  R  V  V  L  R  I  L  S  L  S  F  L  S  L  V  F  F  C  M  Y  R  E  R  T  N  C  V  G  L  H  L  Y  M  T  L  M  M  T  P  S  T  L  *  A  I  L  C  S  I  F  C  I  N  F  E  V  P  F  L  V  F  H  L  C  L  F  L  V  I  C  S  C  K  *  F  I  F  Q  *  *  K  I  S  C  T  S  A  Q  K  K  R  K  R  K  R  V  V  V  L  T  L  N   </first_frame>
            <second_frame>  P  F  E  A  C   : D  *  W  F  R  *  K  I  P  W  I  N  V  I  E  K  C  R  P  F  T  G  *  L  D  V  S  C  L  :  V  S  D  I  S  H  S  Y  G  K  N  Y  *  R  L  V  S  M  L  S  H  I  P  H  T  F  F  F  F  S  R :   Y  G  P  *  *  *  H  G  E  W  Q  K  K  T  K  G  R  R  K  Y  P  P  C  A  F  R  L  G  H  L  Q  N  A  G  R  C  V  A  F  R  Q  E  W  E  G  P  R  E  A  V  N  T  F  *  C  C  *  F  L  A  K  A  V  G  C  P  A  P  R  L  *  L  F  H  G  *  S  S  W  L  I  T  S  Q  M  N  E  F  A  L  Y  K  T  P  P  T  G  L  S  N  N  W  S  S  F  H  *  N  I  G  S  L  R  C  F  W  F  V  A  F  G  S  M  N  S  L  R  T  P  S  C  I  K  A  L  V  F  Y  A  L  F  S  E  S  L  A  *  A  F  C  H  L  F  F  F  V  C  I  G  R  G  L  I  V  *  D  F  I  F  T  *  L  L  *  *  P  L  V  L  C  E  Q  Y  F  A  P  S  F  V  *  I  L  K  Y  L  F  W  C  F  I  C  A  F  S  L  *  Y  V  H  V  N  S  S  S  F  N  S  K  R  F  H  V  Q  V  H  K  K  K  E  K  E  K  E  L  L  C  *  H  *  I  </second_frame>
            <third_frame>   H  L  K  H  V  :  I  S  G  F  A  E  R  Y  P  G  L  M  S  L  R  S  V  D  L  S  P  A  S  W  M  S  V  A  W :   Y  P  I  Y  H  I  P  M  G  R  T  I  K  D  L  S  A  C  F  L  T  F  H  T  L  S  S  S  F  Q   : D  M  D  L  D  D  D  M  E  N  G  K  R  K  R  K  E  G  E  S  I  P  L  A  P  F  G  L  G  T  Y  K  M  Q  G  D  V  W  L  S  D  R  S  G  K  D  Q  E  R  L  S  T  L  F  S  V  A  D  S  W  L  K  Q  L  G  V  Q  H  H  D  F  N  Y  F  M  G  S  R  R  G  *  S  H  L  K  *  M  N  S  R  F  I  K  P  H  Q  R  G  *  V  I  T  G  V  P  F  I  K  T  *  A  L  *  G  V  F  G  L  L  L  S  V  A  *  T  A  L  E  L  P  P  V  *  R  H  *  C  F  T  R  C  S  P  N  P  *  L  E  L  S  V  T  C  F  F  L  Y  V  *  G  E  D  *  L  C  R  T  S  S  L  H  D  S  Y  D  D  P  *  Y  F  V  S  N  T  L  L  H  L  L  Y  K  F  *  S  T  F  F  G  V  S  S  V  P  F  P  C  N  M  F  M  *  I  V  H  L  S  I  V  K  D  F  M  Y  K  C  T  K  K  K  K  K  K  K  S  C  C  V  D  I  E  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0019I13.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79992" stop="79978"/>
                    <exon start="79903" stop="79818"/>
                    <exon start="79554" stop="79463"/>
                    <exon start="79372" stop="79131"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLKHVISGFAERYPGLMSLRSVDLSPASWMSVAWYPIYHIPMGRTIKDLSACFLTFHTLSSSFQDMDLDDDMENGKRKRKEGESIPLAPFGLGTYKMQGDVWLSDRSGKDQERLSTLFSVADSWLKQLGVQHHDFNYFMGSRRG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="78981" PGL_stop="79364"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78981" e_stop="79364"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="78981" e_stop="79364" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78981" stop="79364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279066" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGAGGGAGTTCTAAGGCTGTTCATGCTACCGAAAGCAACAAACCAAAAACACCTCAGAGAGCCTATGTTTTAATGAAAGGAACTCCAGTTATTACTCAGCCCCGTTGGTGGGGTTTTATAAAGCGCGAATTCATTCATTTGAGATGTGATTAGCCACGACGACTACCCATGAAATAGTTAAAGTCGTGGTGCTGGACACCCAACTGCTTTAGCCAAGAATCAGCAACACTAAAAAGTGTTGACAGCCTCTCTTGGTCCTTCCCACTCCTGTCTGAAAGCCACACATCTCCCTGCATTTTGTAAGTGCCCAAGCCGAAAGGCGCAAGGGGGATACTTTCTCCTTCCTTTCGTTTTCTTTTGCCATTCTCCATGTCATCATCAAG</gDNA_template>
            <first_frame> R  R  E  F  *  G  C  S  C  Y  R  K  Q  Q  T  K  N  T  S  E  S  L  C  F  N  E  R  N  S  S  Y  Y  S  A  P  L  V  G  F  Y  K  A  R  I  H  S  F  E  M  *  L  A  T  T  T  T  H  E  I  V  K  V  V  V  L  D  T  Q  L  L  *  P  R  I  S  N  T  K  K  C  *  Q  P  L  L  V  L  P  T  P  V  *  K  P  H  I  S  L  H  F  V  S  A  Q  A  E  R  R  K  G  D  T  F  S  F  L  S  F  S  F  A  I  L  H  V  I  I  K </first_frame>
            <second_frame>  G  G  S  S  K  A  V  H  A  T  E  S  N  K  P  K  T  P  Q  R  A  Y  V  L  M  K  G  T  P  V  I  T  Q  P  R  W  W  G  F  I  K  R  E  F  I  H  L  R  C  D  *  P  R  R  L  P  M  K  *  L  K  S  W  C  W  T  P  N  C  F  S  Q  E  S  A  T  L  K  S  V  D  S  L  S  W  S  F  P  L  L  S  E  S  H  T  S  P  C  I  L  *  V  P  K  P  K  G  A  R  G  I  L  S  P  S  F  R  F  L  L  P  F  S  M  S  S  S   </second_frame>
            <third_frame>   E  G  V  L  R  L  F  M  L  P  K  A  T  N  Q  K  H  L  R  E  P  M  F  *  *  K  E  L  Q  L  L  L  S  P  V  G  G  V  L  *  S  A  N  S  F  I  *  D  V  I  S  H  D  D  Y  P  *  N  S  *  S  R  G  A  G  H  P  T  A  L  A  K  N  Q  Q  H  *  K  V  L  T  A  S  L  G  P  S  H  S  C  L  K  A  T  H  L  P  A  F  C  K  C  P  S  R  K  A  Q  G  G  Y  F  L  L  P  F  V  F  F  C  H  S  P  C  H  H  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0019I13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 113 chains have been computed
$ 
$ memory statistics:
$ 169728 bytes spliced alignments in total
$ 80 spliced alignments have been stored
$ 2121 bytes was the average size of a spliced alignment
$ 20456 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1704 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 127 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-04 08:39:48
-->
