<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-06 12:01:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326945" ref_strand="+" ref_description="SGN-U326945        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | flavin-containing monooxygenase family protein / FMO family protein, low similarity to SP:P97501 Dimethylaniline monooxygenase (N-oxide forming) 3 (EC 1.14.13.8) (Hepatic flavin-containing monooxygenase 3) (FMO 3) {Mus musculus}; contains Pfam profile PF00743: Flavin-binding monooxygenase-like | chr1:6650520-6653069 REVERSE | Aliases: T29M8.12, T29M8_12(evalue: 1e-103, score=372) genbank/nr: Contains(evalue: 3e-110, score=400)">
      <seq>caatctcaaactctacagtggtatgcatttgattttgtggtgatgtgcactggtaaatatggagatatcccaaatataccaaattttccaccaaaaaaagggccaaaagagtttaatggtcaagttcttcatacccttgattactctaaacttgaccaagaagcatctactaaacttatgaaagggaagaaagttgttgttgttggctataaaaaatcagctattgatcttgcagtggaatgtgctgaagctaatcaaggacctgaagggcaaccctgtacaatggttgtaaggactttgcattggacagttccacattactctatttggggtttaccattctacttgttctattcaactagatcttctcagtttctccatgaaagacccaatcaaggattgtttaggacccttctttgccacatgctttctcccatgagaaaagcagcttctaagttaatcgagtcgtatttggaatggaaacttccactagagaagtatggactgaaaccagaacacccttttgaggaagattatgcatcatgtcagatggctatcttgcctgagaatttcttcactgaggcggataagggaaaaatcatgttcaaaagaacatccaagtggtggttctgggaaggaggcgttgaattcgaggacaacaccaagttggaagctgatgttgtcatacttgcaactggttttgatgggaagaaaaagattaaagctatattacctgatccctttcgcagtctggtagagttcccctcaggcatgatacccttgtacaggggtacaatccacccgttgataccaaatatggctttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0025K09.1" temp_strand="+" temp_description="C07HBa0025K09.1  AC212608.1 htgs_phase:1 submitted_to_sgn_as:gi|158262104|gb|AC212608.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="14147" stop="16422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14357" g_stop="14374" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14375" i_stop="14455" i_length="81">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14456" g_stop="14696" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="259" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14697" i_stop="15467" i_length="771">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15468" g_stop="15646" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="438" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15647" i_stop="15733" i_length="87">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15734" g_stop="16122" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="827" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.1" gen_strand="+" ref_id="SGN-U326945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14357" e_stop="14374"/>
          <exon e_start="14456" e_stop="14696"/>
          <exon e_start="15468" e_stop="15646"/>
          <exon e_start="15734" e_stop="16122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTCAAACTCTACAGGTTCTCTTTTTTTTCTCAATATAGTTTTATGTGAAACAATTCAAATTTCGATATTCTTAGGTTTTTTTTTTTTTTAATCAGTGGTATGCATTTGATTTTGTGGTGATGTGCACTGGTAAATATGGAGATATCCCAAATATACCAAATTTTCCACCAAAAAAAGGGCCAAAAGAGTTTAATGGTCAAGTTCTTCATACCCTTGATTACTCTAAACTTGACCAAGAAGCATCTACTAAACTTATGAAAGGGAAGAAAGTTGTTGTTGTTGGCTATAAAAAATCAGCTATTGATCTTGCAGTGGAATGTGCTGAAGCTAATCAAGGTAATTAATTAATTACTAGTAATTCCTTATAAGTCAAAGTATACGATCCTTCTTAATTAATTAATTAACCTAGTGTATTGAATTTTAAATATCTTAAAGTATACTATGTTATAACAATTTATGATAGTCTAAAATGGGATTGTCACACGTCAGGAAGGCAATTGGAATGTATTATCTTTAAAATAGACTTGGTAATTTATGTTTATTTATTTTTAACTAGTAGCGAATTCATCATAATAGACTATTTTTCAACTGTATATATTTAAGCCAATTTGGATACGAAGGGGCTTCCCATCTATTGATTGTTTGTTTGTTTGTGTGGTTCCTAATAATAATTGTTACAACAAAAAATAAATTTCCAAAAACAGGCAGAAGTTGATTTGTCTAAATCCATAAAAGGAAAATAAATTGTGATTGTTCACATCAGTAGTACTATTCTTTTAGAAAATTGAAAGTGCATATATTGATTTACCAAACTACAAACATACATCATGATGGTCAACTTCACAATTATATTTGTTTTTTTTTTCAATGAAAATGTCACCAAAATAAGGAAAAAAAGAAACTTGATTTTTATCTAAATGTCAAAAACACCTTTTTGTTATCTCAAGTCTCATGCTTTGACCTCAAGATAACATCACAGATAGAAGTTTTTTTCACATAGAATTGAAAACCGTCCGAGTTATAAATTTTGAATCATAATTTAATAAATTTTCAATACAAATTCTATAATTTGAGCCAAACAAACGCTACACATTAATTTGTTTGTAGGACCTGAAGGGCAACCCTGTACAATGGTTGTAAGGACTTTGCATTGGACAGTTCCACATTACTCTATTTGGGGTTTACCATTCTACTTGTTCTATTCAACTAGATCTTCTCAGTTTCTCCATGAAAGACCCAATCAAGGATTGTTTAGGACCCTTCTTTGCCACATGCTTTCTCCCATGGTGAGCTCCATTCTTTTTTTTCTTTTTCAATCTAGTGCATCATTTGGCGTAGGACTAACAAAAGCGCGCTTATACATATGGTGACAGAGAAAAGCAGCTTCTAAGTTAATCGAGTCGTATTTGGAATGGAAACTTCCACTAGAGAAGTATGGACTGAAACCAGAACACCCTTTTGAGGAAGATTATGCATCATGTCAGATGGCTATCTTGCCTGAGAATTTCTTCACTGAGGCGGATAAGGGAAAAATCATGTTCAAAAGAACATCCAAGTGGTGGTTCTGGGAAGGAGGCGTTGAATTCGAGGACAACACCAAGTTGGAAGCTGATGTTGTCATACTTGCAACTGGTTTTGATGGGAAGAAAAAGATTAAAGCTATATTACCTGATCCCTTTCGCAGTCTGGTAGAGTTCCCCTCAGGCATGATACCCTTGTACAGGGGTACAATCCACCCGTTGATACCAAATATGGCTTTCGT</genome_strand>
        <mrna_strand>CAATCTCAAACTCTACAG.................................................................................TGGTATGCATTTGATTTTGTGGTGATGTGCACTGGTAAATATGGAGATATCCCAAATATACCAAATTTTCCACCAAAAAAAGGGCCAAAAGAGTTTAATGGTCAAGTTCTTCATACCCTTGATTACTCTAAACTTGACCAAGAAGCATCTACTAAACTTATGAAAGGGAAGAAAGTTGTTGTTGTTGGCTATAAAAAATCAGCTATTGATCTTGCAGTGGAATGTGCTGAAGCTAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGAAGGGCAACCCTGTACAATGGTTGTAAGGACTTTGCATTGGACAGTTCCACATTACTCTATTTGGGGTTTACCATTCTACTTGTTCTATTCAACTAGATCTTCTCAGTTTCTCCATGAAAGACCCAATCAAGGATTGTTTAGGACCCTTCTTTGCCACATGCTTTCTCCCATG.......................................................................................AGAAAAGCAGCTTCTAAGTTAATCGAGTCGTATTTGGAATGGAAACTTCCACTAGAGAAGTATGGACTGAAACCAGAACACCCTTTTGAGGAAGATTATGCATCATGTCAGATGGCTATCTTGCCTGAGAATTTCTTCACTGAGGCGGATAAGGGAAAAATCATGTTCAAAAGAACATCCAAGTGGTGGTTCTGGGAAGGAGGCGTTGAATTCGAGGACAACACCAAGTTGGAAGCTGATGTTGTCATACTTGCAACTGGTTTTGATGGGAAGAAAAAGATTAAAGCTATATTACCTGATCCCTTTCGCAGTCTGGTAGAGTTCCCCTCAGGCATGATACCCTTGTACAGGGGTACAATCCACCCGTTGATACCAAATATGGCTTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314061" ref_strand="+" ref_description="SGN-U314061        Tomato 200607 #1 [24 ESTs aligned] arabidopsis/peptide: | Symbol: None | peroxiredoxin Q, putative, similar to peroxiredoxin Q (Sedum lineare) GI:6899842; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family | chr3:9526013-9527611 FORWARD | Aliases: MPE11.21(evalue: 7e-76, score=281) genbank/nr: gi|42795441|gb|AAS46230.1| peroxiredoxin Q [Populus balsamifera subsp. trichocarpa x Populus deltoides] (evalue: 1e-86, score=323)">
      <seq>caagaccaacaatctgctaataatacaaatttcactatcatcatcacatagtagaaagagagaaaaaaatggcttctctatcggtctctgtaaaacacactcttccttctctgctccaatatgctcaaaccccaaaaaaacccatctcccaaaaccttaccattgtctccagatcatcacaatcccatttttatggccttgaagtccttcattcaccttctttttcaaccccatcttcttcaagaacttcaattgttgctaaggtgaataaaggttcagcgcctccaccattcacattgaaagatcaagatggaaaaaatgtgagtctctccaagtttaaaggaaagcctgtggtggtttatttctaccctgctgatgaaactcctggttgcaccaaacaggcatgtgccttcagggactcttatgaaaaattcaagaaagcaggggctcaagttgttggaattagtggtgatgatattgaatcccacaaggcctttgcaaagaagtacaggctcccatttaccttgttgtgtgatgaaggcaacaaagttaggaaagagtggggaatcccgggagacctttttggtacattgcctggtagacagacttatgtgcttgacaagaatggagtggttcaactcatatataataatcagttccaacctgaaaagcatattgatgagacattgaagttacttcaaagtctttaaacgtcaaggtttccccttctacattcttttcctgcctctagccaataaagttcttgtactttttctgccactaatgtgtgccaattgtatgttatctgataggctgtacaacgacttatatttcatagatgccaaaggagctgttagtttaaagtcattctacaatttatgttgtagaatgttgaactcggtctcccgcgagagataaatttgtatatgggcctttgctatggttgtagtaactgcataatggagaattttcttcaattggcacttcttacagttgttgaaaccccaacagtggtggatcatatagtaaattgtaaatgagaatggagtcacttgtgatgatcttgaaatattaatctttattcattacttttactgataaaaatagaagttctaagtcataagctgaggtatttaacatttgtggataccttgcttgacctttcatacatgtatgtttattccttaaaatgagtagataaatatactgtataagcactaggtatagaagaaataataagttaattaagtaggaaagtttcaaatgttattgagtgaagctacttctcctctgcataatcttggctgttgtaggggctaaaggcttcagccaaccagttcgtcttcctccaaacttgccatcccatctcttggcagatttcatcgctatggttaatactgaaagtggaaatgcaatttctcttgtagaatcttgtcgtcctcttcataatctccatctcttgtgttatctgttcaagcattttctcaacagatggaagcttaaacagatcatcaacaagtcgtgatagccatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0025K09.1" temp_strand="-" temp_description="C07HBa0025K09.1  AC212608.1 htgs_phase:1 submitted_to_sgn_as:gi|158262104|gb|AC212608.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="19544" stop="15872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19244" g_stop="18982" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18981" i_stop="18911" i_length="71">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18910" g_stop="18773" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="401" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18772" i_stop="18073" i_length="700">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18072" g_stop="17983" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="491" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17982" i_stop="17215" i_length="768">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17214" g_stop="16172" g_length="1043"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="1534" r_length="1043" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.1" gen_strand="-" ref_id="SGN-U314061" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U314061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19244" e_stop="18982"/>
          <exon e_start="18910" e_stop="18773"/>
          <exon e_start="18072" e_stop="17983"/>
          <exon e_start="17214" e_stop="16172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGACCAACAATCTGCTAATAATACAAATTTCACTATCATCATCACATAGTAGAAAGAGAGAAAAAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAGGTAAATTGCATTGCATTTGTCTTGCATCTTCCGTTTTTCATGCGGATAAAATTTTGTTTTGATATTTGTAGGTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAGGTATAGATAGACAATTTGATTTTCCAGTTCCCTGTTACCTGTGAAATTTCACTTTCATGGAGAAAACAGTTATGCTTTATTCATAGTGTACTGATGAATTTATTCTTGAAAATAATGAATTGTAGATTAAAATTAGGTACATGGTTAAGGATAATATGAAGCTTAAGGTACTTGAATTGCAAGAATGACCTGACCTATTTGTAGCTTGCCAATACATTAGGTCCGTGTTTCAGAATCAATTATTGCAACCTTTGAAATGACATTGTTATGAGATGTTGATTTGAAGTAGAAACCAAACATGGATATAGACGAACGATTTGAACAATGGAGTTGTGTTTCTAAACACCTTTATAGGCTAGCGTAGAAAACGAGTTTCCTTTTAATGGTTCTGGTGGCACATCCTCTTAAAAGTTATAAGATAGACTTACTGTTTGAACCATCATACGGAAATCACTGGAGAATTGCTTCATCCTTCTTAATTTATATAGTTTTATTAAATTTCTATTATCCTGACCAACTGTTTTGTTCGTTTCTAGTTTATAGTGGTTGAAAATTGAAGTTGTGGAGTTACAGCAAGTCAGCAACAACTTCATGAATAGTTGATAGATTACATTGAACTATTATTTTCAATTTCACAACTTTGTAGCAATGATCTTCAGAAGTTACCTGGAGCTAACCAATATGTAAAAACTGTCTGCAGGCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAGGTATTACAGATTGACTTGCTCAATGCATTAAACAGCTAAATATTCTGTTGTCTGGAACTTTATTTCTATTGCAGGTTAACTGGAGAATGCTAGTTCTCCTAAACCAAATTACATTATTCTTGCTCTTCCTTCGTGTCCTTATGTAGGACGAATTGACTATTTGAAATACCTATTCTGTTCCACAGAGTATTATAAATACGAATAACTAGAAGTAATTTTATAGTTTCTTTCAAAGACAATCTCAGGTAGAGGTAAGGTTTGTATACTATCTACTCTCCCAGACTCCACTTGAGGGACTATACTAGGTATGCTATAGTTGTAGAGAACTAGTAAACAATCTGGGGCTTTAGTGTCACAGAGCTGAAATACAATGTTATTAGGAAGCTCTGGCAATAACGTATGCATTGCCTGATAAAATAGGAAAAAACAAAGGAAAAGTAGTAGTCTGACTGTCCCTTTAAAGTTATGAGGATCCTTTGGGTGATTAAACATGGTAAAAATCTTTCAAGGAGCATTTGTTGAGATTTCTGAAAATGTACACTCACTACTAAATGTCTGAATTTGACATTACCAGTTTCAAAAAAAACTAAATGTCTGAATTTGTGATTGTGTTTTGTTTCTTCTCATGTCAAGGATATACTCCTAGTTATCCTGTATTCTGAACTTCTTTATTAGATATTGCCTCACCTTTCACTATTGTTCTCTAGATTTAGGATGCGTAGTGTTGTTGACCTCTTGTAAGGATATCTGACATGTTTTATTCTGCAGGCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCAATTGGCACTTCTTACAGTTGTTGAAACCCCAACAGTGGTGGATCATATAGTAAATTGTAAATGAGAATGGAGTCACTTGTGATGATCTTGAAATATTAATCTTTATTCATTACTTTTACTGATAAAAATAGAAGTTCTAAGTCATAAGCTGAGGTATTTAACATTTGTGGATACCTTGCTTGACCTTTCATACATGTATGTTTATTCCTTAAAATGAGTAGATAAATATACTGTATAAGCACTAGGTATAGAAGAAATAATAAGTTAATTAAGTAGGAAAGTTTCAAATGTTATTGAGTGAAGCTACTTCTCCTCTGCATAATCTTGGCTGTTGTAGGGGCTAAAGGCTTCAGCCAACCAGTTCGTCTTCCTCCAAACTTGCCATCCCATCTCTTGGCAGATTTCATCGCTATGGTTAATACTGAAAGTGGAAATGCAATTTCTCTTGTAGAATCTTGTCGTCCTCTTCATAATCTCCATCTCTTGTGTTATCTGTTCAAGCATTTTCTCAACAGATGGAAGCTTAAACAGATCATCAACAAGTCGTGATAGCCATAT</genome_strand>
        <mrna_strand>CAAGACCAACAATCTGCTAATAATACAAATTTCACTATCATCATCACATAGTAGAAAGAGAGAAAAAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAG.......................................................................GTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCAATTGGCACTTCTTACAGTTGTTGAAACCCCAACAGTGGTGGATCATATAGTAAATTGTAAATGAGAATGGAGTCACTTGTGATGATCTTGAAATATTAATCTTTATTCATTACTTTTACTGATAAAAATAGAAGTTCTAAGTCATAAGCTGAGGTATTTAACATTTGTGGATACCTTGCTTGACCTTTCATACATGTATGTTTATTCCTTAAAATGAGTAGATAAATATACTGTATAAGCACTAGGTATAGAAGAAATAATAAGTTAATTAAGTAGGAAAGTTTCAAATGTTATTGAGTGAAGCTACTTCTCCTCTGCATAATCTTGGCTGTTGTAGGGGCTAAAGGCTTCAGCCAACCAGTTCGTCTTCCTCCAAACTTGCCATCCCATCTCTTGGCAGATTTCATCGCTATGGTTAATACTGAAAGTGGAAATGCAATTTCTCTTGTAGAATCTTGTCGTCCTCTTCATAATCTCCATCTCTTGTGTTATCTGTTCAAGCATTTTCTCAACAGATGGAAGCTTAAACAGATCATCAACAAGTCGTGATAGCCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337548" ref_strand="-" ref_description="SGN-U337548        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:14506315-14512806 FORWARD | Aliases: None(evalue: 4e-31, score=132) genbank/nr: gi|3337366|gb|AAC27411.1| nodulin-like protein [Arabidopsis thaliana] (evalue: 3e-29, score=132)">
      <seq>atcagaagatgaagcagaaatagattctgaaggccgtttgatatttcacgatggagataagaagcaaaaaagagttaagccagcttctgatgatttagatgtaagaagcaaagcagggagtcgcttttcagagagctcaaggaagactcagaaacggaggagaacatctgaatcaggatgggcttacactggaacagagtatgcgagcaagaaggcaggtggtgatgtcaagaagaaagacagacttgagccgtatgcctactggccccttgaccgcaagatgatgagccggaggcctgaacatcgggcagcagcacgaaaaggaatgtcaagcattgtgaagctaacaaagaagcttgaaggcaagagtgcatcatctgtgctgtccgtgaagagatctaagactaaaaagaaaaatagatcataaatagaggatgaagtcgaagtctgatttgatgatactacgtcatgagggagagctctgtccagaggcttggtagtttttgtgccatagtttgtagttggggattctggatatccagtacacccatgttttctttcgtgtcctttttcatttaattcatccatatatatcaccttcaacaggtgatttgttttttttgatagggttgtatgtaggaaatagagtgtacgtatgcaaatgcattcaatacaagctacttgaattggtgagttattggtaatatataacattattgcaatatgcaatgacttaaaagtaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0025K09.1" temp_strand="-" temp_description="C07HBa0025K09.1  AC212608.1 htgs_phase:1 submitted_to_sgn_as:gi|158262104|gb|AC212608.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="25289" stop="23946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24989" g_stop="24249" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="741" r_length="741" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="742" polyA_stop="764"/>
      <MATCH_line gen_id="C07HBa0025K09.1" gen_strand="-" ref_id="SGN-U337548" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337548" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24989" e_stop="24249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGAAGATGAAGCAGAAATAGATTCTGAAGGCCGTTTGATTATTCACGATGGAGATAAGAAGCAAAAAAGAGTTAAGCCAGCTTCTGATGATTTAGATGTAAGAAGCAAAGCAGGGAGTCGCTTTTCAGAGAGCTCAAGGAAGACTCAGAAACGGAGGAGAACATCTGAATCAGGATGGGCTTACACTGGAACAGAGTATGCGAGCAAGAAGGCAGGTGGTGATGTCAAGAAGAAAGACAGACTTGAGCCGTATGCCTACTGGCCCCTTGACCGCAAGATGATGAGCCGGAGGCCTGAACATCGGGCAGCAGCACGAAAAGGAATGTCAAGCATTGTGAAGCTAACAAAGAAGCTTGAAGGCAAGAGTGCATCATCTGTGCTGTCCGTGAAGAGATCTAAGACTAAAAAGAAAAATAGATCATAAATAGAGGATGAAGTCGAAGTCTGATTTGATGATACTACGTCATGAGGGAGAGCTCTGTCCAGAGGCTTGGTAGTTTTTGTGCCATAGTTTGTAGTTGGGGATTCTGGATATCCAGTACACCCATGTTTTCTTTCGTGTCCTTTTTCATTTAATTCATCCATATATATCACCTTCAACAGGTGATTTGTTTTTTTTGATAGGGTTGTATGTAGGAAATAGAGTGTACGTATGCAAATGCATTCAATACAAGCTACTTGAATTGGTGAGTTATTGGTAATATATAACATTATTGCAATATGCAATGACTTAAAAGT</genome_strand>
        <mrna_strand>ATCAGAAGATGAAGCAGAAATAGATTCTGAAGGCCGTTTGATATTTCACGATGGAGATAAGAAGCAAAAAAGAGTTAAGCCAGCTTCTGATGATTTAGATGTAAGAAGCAAAGCAGGGAGTCGCTTTTCAGAGAGCTCAAGGAAGACTCAGAAACGGAGGAGAACATCTGAATCAGGATGGGCTTACACTGGAACAGAGTATGCGAGCAAGAAGGCAGGTGGTGATGTCAAGAAGAAAGACAGACTTGAGCCGTATGCCTACTGGCCCCTTGACCGCAAGATGATGAGCCGGAGGCCTGAACATCGGGCAGCAGCACGAAAAGGAATGTCAAGCATTGTGAAGCTAACAAAGAAGCTTGAAGGCAAGAGTGCATCATCTGTGCTGTCCGTGAAGAGATCTAAGACTAAAAAGAAAAATAGATCATAAATAGAGGATGAAGTCGAAGTCTGATTTGATGATACTACGTCATGAGGGAGAGCTCTGTCCAGAGGCTTGGTAGTTTTTGTGCCATAGTTTGTAGTTGGGGATTCTGGATATCCAGTACACCCATGTTTTCTTTCGTGTCCTTTTTCATTTAATTCATCCATATATATCACCTTCAACAGGTGATTTGTTTTTTTTGATAGGGTTGTATGTAGGAAATAGAGTGTACGTATGCAAATGCATTCAATACAAGCTACTTGAATTGGTGAGTTATTGGTAATATATAACATTATTGCAATATGCAATGACTTAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322186" ref_strand="+" ref_description="SGN-U322186        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:14506315-14512806 FORWARD | Aliases: None(evalue: 1e-149, score=500) genbank/nr: gi|42571047|ref|NP_973597.1| expressed protein [Arabidopsis thaliana] (evalue: 1e-147, score=500)">
      <seq>cagaggcttttggaggtgacccaagaagctggggaggcagggaaggacaaaaaatcgcattcaatgcagattgatgactcatccagtaaaagttctttgtcagagagggcacagttatttgatctggcagtttcattcttgcctggtttaaacgctcaagaaattggtgtgctgtttggtgctttaaagcctgctttaaaggatgaggaaggcttgatccagaagaaggcatataaagttctctccatgatccttcaggactgtgatgaatttatttccacgaagaccgaagagttgcttaatttgatgattgaagcactacctgcatgtcattttccagccaagcgtcacagacttgactgcctatactttttgattgtccatgttacgaaggatgaatcagaacagaggaggcgtgacagtattacttcttttatgactgaaattttgcttgcactcaaagaggctaacaagaaaacaaggaaccgagcgtacgagattcttgtcaagattggccatgcttgtgcagatgaagacaaaggtggcagaaaggagcacctgcatcagttttttaatatgattgctgggggtcttgccggggaaacacctcatatgatcagtgcagcggttaaaggccttgctcgactggcttatgaattttcagaccttgtttctgctgcttacagtgtcctaccatcaacatttcttctccttaaaagagagaacaaagaaataattaaggctaatttagggctgttgaaggtactggtcacaaaatcgacggccgatggattgcaagcacatttaaggaacatggtagaggcccttcttggttggcaaaatagtaccaagaaccatttcaaagccaaggttaaactgcttattgaaatgcttatcaagaagtgtggattggatgctgtaaaagaggtgatgcctgaagagcacatgaaactccttactaacataagaaagatcaaagagcgaagagagaggagcctcgcctcgaattctgaggaaagcagatcccgtatgacaaaagcaacgacatcaaggctaagcagatggaatcatacaaaaatattttctgagtttgatgatggagaatctgagaacagtgatgcagaatatatggacacgaaaactactgctggtcgtaggagcaaggctacattagtatcagactccaaagcatctttattacggtccaagaaaacacggaaagcagccaagagtttgcaggaagatctgtttgatcaattagatgatgagccacttgacttacttgaccagaagaagaccaggtcagctcttagagcatctggcaatctcaagaggaagtctgaatcagaagatgaagcagaaatagattctgaaggccgtttgattattcacgatggagataagaagcaaaaaagagttaagccagcttctgatgatttagatgtaagaagcaaagcagggagtcgcttttcagagagctcaaggaagactcagaaacggaggagaacatctgaatcaggatgggcttacactggaacagagtatgcgagcaagaaggcaggtggtgatgtcaagaagaaaacacggaaagcagccaagagtttgcaggaagatctgtttgatcaattagatgatgagccggaggcctgaacatcgggcagcagcacgaaaaggaatgtcaagcattgtgaagctaacaaagaagcttgaaggcaagagtgcatcatctgtgctgtccgtgaagagatctaagactaaaaagaaaaatagatcataaatagaggatgaagtcgaagtctgatttgatgatactacgtcatgagggagagctctgtccagaggcttggtagtttttgtgccatagtttgtagttggggattctggatatccagtacacccatgttttctttcgtgtcctttttcatttaattcatccatatatatcaccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0025K09.1" temp_strand="-" temp_description="C07HBa0025K09.1  AC212608.1 htgs_phase:1 submitted_to_sgn_as:gi|158262104|gb|AC212608.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="30012" stop="24089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29712" g_stop="29606" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29605" i_stop="29509" i_length="97">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29508" g_stop="29415" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="201" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29414" i_stop="29337" i_length="78">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.305" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29336" g_stop="29280" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="258" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29279" i_stop="28879" i_length="401">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28878" g_stop="28744" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="393" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28743" i_stop="28643" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28642" g_stop="28571" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="465" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28570" i_stop="27584" i_length="987">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27583" g_stop="27470" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="579" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27469" i_stop="27379" i_length="91">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27378" g_stop="27217" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="741" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="27216" i_stop="27130" i_length="87">
            <donor d_prob="0.821" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="27129" g_stop="27001" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="742" r_stop="870" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="27000" i_stop="26828" i_length="173">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="26827" g_stop="26726" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="871" r_stop="972" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="26725" i_stop="26636" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="26635" g_stop="26556" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="973" r_stop="1052" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="26555" i_stop="25421" i_length="1135">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="25420" g_stop="25271" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1053" r_stop="1202" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="25270" i_stop="25131" i_length="140">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="25130" g_stop="24389" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1203" r_stop="1951" r_length="749" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.1" gen_strand="-" ref_id="SGN-U322186" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>1944</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29712" e_stop="29606"/>
          <exon e_start="29508" e_stop="29415"/>
          <exon e_start="29336" e_stop="29280"/>
          <exon e_start="28878" e_stop="28744"/>
          <exon e_start="28642" e_stop="28571"/>
          <exon e_start="27583" e_stop="27470"/>
          <exon e_start="27378" e_stop="27217"/>
          <exon e_start="27129" e_stop="27001"/>
          <exon e_start="26827" e_stop="26726"/>
          <exon e_start="26635" e_stop="26556"/>
          <exon e_start="25420" e_stop="25271"/>
          <exon e_start="25130" e_stop="24389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGGCTTTTGGAGGTGACCCAAGAAGCTGGGGAGGCAGGGAAGGACAAAAAATCGCATTCAATGCAGATTGATGACTCATCCAGTAAAAGTTCTTTGTCAGAGAGGTAGGATGACTAAATCACATTTGTTTCATTCCTTCTGCCGTTAAGCCCTTTTTCCTTTGTGTTAATGCCATTCATATCTCTTGCTTCTACCATTTAGGGCACAGTTATTTGATCTGGCAGTTTCATTCTTGCCTGGTTTAAACGCTCAAGAAATTGGTGTGCTGTTTGGTGCTTTAAAGCCTGCTTTAAAGGTTGGTAGCAGTTGTGGCTTTGCTTCTGCACTTTTAGCTTCTTCATGTAGAAAGTTTATTAACTAATATGAGGCACAGGATGAGGAAGGCTTGATCCAGAAGAAGGCATATAAAGTTCTCTCCATGATCCTTCAGGTAAGTTTTTTCCCAAAGTATCATGAAGTTATTATTGAAGTTTCTTCTCAGAATTCTTCTCAACATATCTAAGACTGGACGGTTATATCAAAACTTAGAAATGATTTCAAGATAACTTTTTAGTTGAGTAAGCTTTGTAAAATATCATTATCATGGTTCAGAATATTTGGAGGAAAGGCGATTTAGGCCTTTCATGTTAATGCAGTCATTTGATGGTACCCAATTGAATTAAATTCCAAGATTGAATACTTGAATTTGGCATGACAGTTATTTATGCCCTTGTCCTTGTTCTGAAGCAAGTAATCTGAACTATAATGTTAAAGCACCTCTTTTATGATTCTTAATTATATTTTTGACACATTTATTTTGTGGCTAATAAGTTTTGCAACTTCTGTGTACAGGACTGTGATGAATTTATTTCCACGAAGACCGAAGAGTTGCTTAATTTGATGATTGAAGCACTACCTGCATGTCATTTTCCAGCCAAGCGTCACAGACTTGACTGCCTATACTTTTTGATTGTCCATGTTACGAAGGTGAGGATTCTCCTCAAGTGGATGATACTAAGATGCCTCTGATTTATGCAAATTCTTACTGAATTTCGCGTAGTCTTTTAACGGTTTATTGCATTCTACAGGATGAATCAGAACAGAGGAGGCGTGACAGTATTACTTCTTTTATGACTGAAATTTTGCTTGCACTCAAAGAGGTATACTTATTAATTGTGATAGAGTTTCACTGTAGAGTTTACCCAATTTTCTTTTCCATATTAATTTATATAGCTGTTAATCTGCCAATTTGTCCTCCATGATTTTCTCCCATAGTTGTGAAGTGGTACCAACCAGTTTGGTGACTGGCTAAATGGAACGTATGGAAACTCTAAGCTTGTTTTGCAATAAACAGTGCCGTGAAATAATTTTCATGAATCATTTTGTGGGGGACCTTGACTATAGAAAGTGCATAGTTCAATATATTGACATTCTATTTCTCAACCAAGAGTGCTGCTATTAATTAAATGAAAAGATAATTCCAGTGAATTTTTATTTGCATAATGGCATATTATGGGAGGACTCTACAGGAAATTGTATGCTCTCTTTTATTTAATATTCTAAACTTCATACTCTATCAAAATCAGTTTTGAGCCCTTTGCAAATTTTTATGGCAATAAGTTGCTAGCTATAATCAATGTTATCATCATGAATTTTACTTTCCTTTCTTTAGGTTTTATTCATGTTGTCAAACTTTTAAGAGTACCTAGCCTATACCTACGCGTGCTCTTTGTGAGTTAGTATTTACATGTGAAACGACATTCTAAAATACACTGGCTAAGCATTAGTTTTTTGTAGGATGCTGATGGAATATGATTGTACAAGCTACACTTGTAATCTCATTTTTGTGCTCTTATCATTTACCTCCATCAATTTACAGTTGCTCTTTCATTTGTCATTCATAGCCTTGAATGGTCTTCAATTTCTCTTTAATATCGGGTATCTTGCAAAAGCGTCAAGTTAATTCCCAAAATAGTTACTTTCTTCTTTCATGCATGATCATATTTGTCAGAGTTTTTTCAGAAGTTCATAGCGCAATAATTTCTCACCATTAACTAGTCTTGGCTGCATAACTGGAAGGACAGCTATATTGTTTACATCATAATTATTTGATTTATGTGCTGAGTTATTTGATGGTTCCATATAAGGCTAACAAGAAAACAAGGAACCGAGCGTACGAGATTCTTGTCAAGATTGGCCATGCTTGTGCAGATGAAGACAAAGGTGGCAGAAAGGAGCACCTGCATCAGTTTTTTAATATGGTATGACAATTATAATCTGATGAATTTATGTAATGGAGTAGGATCTTTCAGTTTGACATAAGCTTCATTGTCGTTGATGTTCCGCTGGCAGATTGCTGGGGGTCTTGCCGGGGAAACACCTCATATGATCAGTGCAGCGGTTAAAGGCCTTGCTCGACTGGCTTATGAATTTTCAGACCTTGTTTCTGCTGCTTACAGTGTCCTACCATCAACATTTCTTCTCCTTAAAAGAGAGAACAAAGAAATAATTAAGGTGTGTTTTTGTCTGCATTAAGACACTCTTCGAATTATGTTCACCCGCCATCTTATGGATGTCAGCTGAAACTTGTCTTGAATGCAGGCTAATTTAGGGCTGTTGAAGGTACTGGTCACAAAATCGACGGCCGATGGATTGCAAGCACATTTAAGGAACATGGTAGAGGCCCTTCTTGGTTGGCAAAATAGTACCAAGAACCATTTCAAAGCCAAGGTTTTTGCTTTTCTCCTAAATTCTAAACTTGTGGTTTGAGTTGGTTTTGGTTCCTGTATGCAATTACTCAATTTTCAGTGGTCTTCTCTAATTTTGTTTGTGGAATTTCTTTCCTGTTATGAAAAGATTAGATGTTGATTGAAAGGTGGCTGGGTGCATGTTATGTTTGACAGGTTAAACTGCTTATTGAAATGCTTATCAAGAAGTGTGGATTGGATGCTGTAAAAGAGGTGATGCCTGAAGAGCACATGAAACTCCTTACTAACATAAGAAAGGTTAGTTATGATCTGGACTAGAACCTGTGAAAATGCTAGTGTGATATTAAATGTTCAGATGAATTATTTATTCTTCTGATGAAAATGTAGATCAAAGAGCGAAGAGAGAGGAGCCTCGCCTCGAATTCTGAGGAAAGCAGATCCCGTATGACAAAAGCAACGACATCAAGGTTGGTTTCCTTTCCTCCATACCTACATACTGAAGTTAAGAAGAATATGCACAAGAATATTGGTAGGGATGGTAATGGGTCGGGGCATATGTGTGGCGGGGTTGATTTAAGGCTATGTGGGATAGGTTGAATTTTTCTTTTTAAAACTATGCGGGGCGGGGTGGGTTGCAGATATTTGTGATTTTATGCGGGTTCATAGTTAATTTTAACTTTTTAAATGTAGAGTGATAGAACATTATTTATTAAGACGATTTCTTTAAAGCTACTAAATTATTCAAGATAGTTTATGAATATGGTTCAATAAAAAATAATACAATTTGTTACATTATCTGTTAAATTAACACAACTTTTTAAGTCATTATTACGTTATGAACTTCTAAAAACATTCGGAGCAAAATGATCATGCATGAAAGAAGAAAGTAACTATTTTAGGAATTAACTTGACGCTTTTGCCAAGTTACCCAATCTTAAAGATAAATCAAAGACCATTCAAGGCTATGAATAACAAATGAAAGAGCAACTGTAAATTGATGGAGGTAAATGATAAGAGAACAAAACTGAATTACAAGTGTAGTTTGTGCAGAATCATATTCCATCAGAATCCTACGAAGACTAATGCTTAGTGCCCAAATATTTTTTTACGTCATTATCTATTAAATTAATACAGCTTAATTAAAAAATGAAATTTATTTTTATAAATTTCTAGAAAAAATATTAAAATAATTATGCGGGGCGGGTTGAAAATGAAAAGGGTTGTTATGCAGAGCGGAGCGAGGTGGATTAAAAATTTTGCGGGTTAAACTCAACCCACCCCATTGTCATCCCTAAATGTTGGATGAACACAAGAATATTGGATGCCTAATGCATGGTGAAGCGACTAAAACATATTGGAGTATTTTATGTACCTTTGCTGGGTTGGAACAATTTTTTATCATGAAACAAATATTTGCCTATTTTTGACCGTCTCTGTGTTAATGATGAATCTTCAGATCATTCCCAGTTAAGATGGACAATGACTCTTTGGTCTTCAGTCTTTTGTAGTTTGTATCACATGGATAATAAGTCATTTCAATGCCTTGGTATCTTGTCAACTAGTTATAGTACCTGTGGTATTAACTTTTCCATCCTGTTACAGGCTAAGCAGATGGAATCATACAAAAATATTTTCTGAGTTTGATGATGGAGAATCTGAGAACAGTGATGCAGAATATATGGACACGAAAACTACTGCTGGTCGTAGGAGCAAGGCTACATTAGTATCAGACTCCAAAGCATCTTTATTACGGTGAGTTTGAATGTTTTAAGATGTTATGTCCTACAGTACGTAGGAAGTCAAACGTAATTTAGTTTAAAGGAAATGAATGATGCTTTGTAGCTTTAAACTATTTCACATGTAAGATGAATGGGTGTATGTCATATTTCCAGGTCCAAGAAAACACGGAAAGCAGCCAAGAGTTTGCAGGAAGATCTGTTTGATCAATTAGATGATGAGCCACTTGACTTACTTGACCAGAAGAAGACCAGGTCAGCTCTTAGAGCATCTGGCAATCTCAAGAGGAAGTCTGAATCAGAAGATGAAGCAGAAATAGATTCTGAAGGCCGTTTGATTATTCACGATGGAGATAAGAAGCAAAAAAGAGTTAAGCCAGCTTCTGATGATTTAGATGTAAGAAGCAAAGCAGGGAGTCGCTTTTCAGAGAGCTCAAGGAAGACTCAGAAACGGAGGAGAACATCTGAATCAGGATGGGCTTACACTGGAACAGAGTATGCGAGCAAGAAGGCAGGTGGTGATGTCAAGAAG-AAAGACAGACTTGAGCC----GTATGC-CTACTGGCCCCTTGA-CCGCAAGATGATGAGCCGGAGGCCTGAACATCGGGCAGCAGCACGAAAAGGAATGTCAAGCATTGTGAAGCTAACAAAGAAGCTTGAAGGCAAGAGTGCATCATCTGTGCTGTCCGTGAAGAGATCTAAGACTAAAAAGAAAAATAGATCATAAATAGAGGATGAAGTCGAAGTCTGATTTGATGATACTACGTCATGAGGGAGAGCTCTGTCCAGAGGCTTGGTAGTTTTTGTGCCATAGTTTGTAGTTGGGGATTCTGGATATCCAGTACACCCATGTTTTCTTTCGTGTCCTTTTTCATTTAATTCATCCATATATATCACCTTC</genome_strand>
        <mrna_strand>CAGAGGCTTTTGGAGGTGACCCAAGAAGCTGGGGAGGCAGGGAAGGACAAAAAATCGCATTCAATGCAGATTGATGACTCATCCAGTAAAAGTTCTTTGTCAGAGAG.................................................................................................GGCACAGTTATTTGATCTGGCAGTTTCATTCTTGCCTGGTTTAAACGCTCAAGAAATTGGTGTGCTGTTTGGTGCTTTAAAGCCTGCTTTAAAG..............................................................................GATGAGGAAGGCTTGATCCAGAAGAAGGCATATAAAGTTCTCTCCATGATCCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................GACTGTGATGAATTTATTTCCACGAAGACCGAAGAGTTGCTTAATTTGATGATTGAAGCACTACCTGCATGTCATTTTCCAGCCAAGCGTCACAGACTTGACTGCCTATACTTTTTGATTGTCCATGTTACGAAG.....................................................................................................GATGAATCAGAACAGAGGAGGCGTGACAGTATTACTTCTTTTATGACTGAAATTTTGCTTGCACTCAAAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAACAAGAAAACAAGGAACCGAGCGTACGAGATTCTTGTCAAGATTGGCCATGCTTGTGCAGATGAAGACAAAGGTGGCAGAAAGGAGCACCTGCATCAGTTTTTTAATATG...........................................................................................ATTGCTGGGGGTCTTGCCGGGGAAACACCTCATATGATCAGTGCAGCGGTTAAAGGCCTTGCTCGACTGGCTTATGAATTTTCAGACCTTGTTTCTGCTGCTTACAGTGTCCTACCATCAACATTTCTTCTCCTTAAAAGAGAGAACAAAGAAATAATTAAG.......................................................................................GCTAATTTAGGGCTGTTGAAGGTACTGGTCACAAAATCGACGGCCGATGGATTGCAAGCACATTTAAGGAACATGGTAGAGGCCCTTCTTGGTTGGCAAAATAGTACCAAGAACCATTTCAAAGCCAAG.............................................................................................................................................................................GTTAAACTGCTTATTGAAATGCTTATCAAGAAGTGTGGATTGGATGCTGTAAAAGAGGTGATGCCTGAAGAGCACATGAAACTCCTTACTAACATAAGAAAG..........................................................................................ATCAAAGAGCGAAGAGAGAGGAGCCTCGCCTCGAATTCTGAGGAAAGCAGATCCCGTATGACAAAAGCAACGACATCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGCAGATGGAATCATACAAAAATATTTTCTGAGTTTGATGATGGAGAATCTGAGAACAGTGATGCAGAATATATGGACACGAAAACTACTGCTGGTCGTAGGAGCAAGGCTACATTAGTATCAGACTCCAAAGCATCTTTATTACG............................................................................................................................................GTCCAAGAAAACACGGAAAGCAGCCAAGAGTTTGCAGGAAGATCTGTTTGATCAATTAGATGATGAGCCACTTGACTTACTTGACCAGAAGAAGACCAGGTCAGCTCTTAGAGCATCTGGCAATCTCAAGAGGAAGTCTGAATCAGAAGATGAAGCAGAAATAGATTCTGAAGGCCGTTTGATTATTCACGATGGAGATAAGAAGCAAAAAAGAGTTAAGCCAGCTTCTGATGATTTAGATGTAAGAAGCAAAGCAGGGAGTCGCTTTTCAGAGAGCTCAAGGAAGACTCAGAAACGGAGGAGAACATCTGAATCAGGATGGGCTTACACTGGAACAGAGTATGCGAGCAAGAAGGCAGGTGGTGATGTCAAGAAGAAAACACGGAAAGCAGCCAAGAGTTTGCAGGAAGATCTGTTTGATCAATTAGATGATGAGCCGGAGGCCTGAACATCGGGCAGCAGCACGAAAAGGAATGTCAAGCATTGTGAAGCTAACAAAGAAGCTTGAAGGCAAGAGTGCATCATCTGTGCTGTCCGTGAAGAGATCTAAGACTAAAAAGAAAAATAGATCATAAATAGAGGATGAAGTCGAAGTCTGATTTGATGATACTACGTCATGAGGGAGAGCTCTGTCCAGAGGCTTGGTAGTTTTTGTGCCATAGTTTGTAGTTGGGGATTCTGGATATCCAGTACACCCATGTTTTCTTTCGTGTCCTTTTTCATTTAATTCATCCATATATATCACCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331259" ref_strand="+" ref_description="SGN-U331259        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:14506315-14512806 FORWARD | Aliases: None(evalue: 2e-84, score=308) genbank/nr: gi|3337366|gb|AAC27411.1| nodulin-like protein [Arabidopsis thaliana] (evalue: 2e-82, score=308)">
      <seq>gaagctataagggctgcgctggaggcactcaagattttaatacatgaatgcattgatgaaaacttgatcaaacagggtgtggataacataattagttcgaatactgatgcgaaaaaatctggaccaactatcattgagaaaatctgtgccacaattgagagcttgcttacctatcactatgcagcagtttgggacatgtcatttcaagtggtggttgccatgtttgataagctaggttgctattcttctcaccttctgaagggaacactacagagtttggctgatatggaaaagttgccagatgaagacttccctttccgtagacagctgcacgaatgtgttggatcagctgttggtgcaatgggacctgaatcttttcttactcttcttcctcttaaactggatgtacaagatctgtcagagtccaacatctggcttttcccaattctaaagcaaaatattgttggtgcgcatttaagtttctttaccaactcaattttgccaatggttggagctatgaagcagaggtctgcaatgcttgagcgcgagggaaagatatattcagcaagaactattgatggaattgtgtactcattgtggtcactgttaccctcattttgcaattaccctgtcgacactgctgaaagcttcaaggatctggagaaggtattccgcaaagctctacatgaagagcctgatgtttgtgggataatatgctccagtttgcagatcctcgttcagcagaatgatagcattttaaaagggacagttgatctgtctgatactgaaacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0025K09.1" temp_strand="-" temp_description="C07HBa0025K09.1  AC212608.1 htgs_phase:1 submitted_to_sgn_as:gi|158262104|gb|AC212608.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="36341" stop="30760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36041" g_stop="35807" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35806" i_stop="35463" i_length="344">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35462" g_stop="35371" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="327" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35370" i_stop="31627" i_length="3744">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31626" g_stop="31417" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="537" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31416" i_stop="31318" i_length="99">
            <donor d_prob="0.347" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31317" g_stop="31060" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="795" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.1" gen_strand="-" ref_id="SGN-U331259" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36041" e_stop="35807"/>
          <exon e_start="35462" e_stop="35371"/>
          <exon e_start="31626" e_stop="31417"/>
          <exon e_start="31317" e_stop="31060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTATAAGGGTTGCGCTGGAGGCACTCAAGATTTTAATACATGAATGCATTGATGAAAACTTGATCAAACAGGGTGTGGATAACATAATTAGTTCGAATACTGATGCGAAAAAATCTGGACCAACTATCATTGAGAAAATCTGTGCCACAATTGAGAGCTTGCTTACCTATCACTATGCAGCAGTTTGGGACATGTCATTTCAAGTGGTGGTTGCCATGTTTGATAAGCTAGGTGATTATCTGTTAAAAAATCTATTAGCCATCTTAAGCTCTAAAACTCAATATTTAGTTTCAAGTTGTTGAATGGTCTATAAATTATTTTGTATATATAGTTTTCTACACTAACTCTAATTAGGTTTCATGGATTTGGACTTCCTAAAATGATATCCACTTTGATAAAACTGAGTACTTGTTGTTGCTTCTTTCCTTAGTATTCTACTACTGATCATGCCTATTGTAAGTGACTTATCATTGGACGGAATTGGTGATGTAATGAGCTAGATTTAATTGCGTTCTTCCTATACATCAACCAAGGAATGACTAGCAAAGTGCTACTTTTCATTGACTTCTTTTTAGGTTGCTATTCTTCTCACCTTCTGAAGGGAACACTACAGAGTTTGGCTGATATGGAAAAGTTGCCAGATGAAGACTTCCCTTTCCGTAGACAGGTGAGCCTTGCTTTTGGGGTTGTTTATTCATGGAAATGGCTTTTGTCGTGTTAACCTTGATGTCATTGGGGGAGTCCTTTTTTCTTTTTCTTTCTCCCTCACCTATTTATTCTTATATTGCTGCTATTTACAATTCAACCTTTTCGGCGACAGTTTGTCGTTTTTCCTATTTGGTATCTGACAGACAATGAGAATATTTTTTTAAACATTGATAAAATTGTATTCTTCCGTATTAAGGATATGCTGGCCACCTTAAATAATTTACAGCCCTAACCAAAATTACAAGCTCCCTATTAATTTTATTATTTGATCTACATCTTCTATATAGAGCTATTTGCACCAAAAAAGTAGTGATACCAAACAATTCCATTTTACTTTGTGAATGGAGTTAGATCTATCTTCAAAACTAGCTTCCACCATTTCTTTTTAGTCTTGCTACCCCCTTCTGATCCAGCAACTAAAAAGGTCAGAAGTTTGTCCTCGCATAGTCCACTTGAAACCTCTGATGTGGGGAACAACTTGCAGATCTGTGTTGTGAATTTGCAATGTAGGAAAAAGTGTTTGTTTGTTTCCCATATTAACTTGCATAGAGAACTCCTAGGGACTAGTTGCATTCCTCTCTTCTGTAGGACTTCTTGAGTTGAGCAGGCTCTTTTGATGACTAACCAAGTGAAGCATTTCACTTTAGTGAAGTTTATTGATTAAGTTGGTCTTTGCAATTAAAATAGTAGCGTACTGTTACTGCTCAGTCCTTGCGTTGAATGGAGATCTCAAAAATTGATAAACAATGTTTTATGATCATGATACTTAAAATGATGCAAATGAACACAAAAGTTTTGTATGTAGAATAGGATCAGAAAGGAATTTTTTAAAAATGAACTACAAGAATATGATGAGAGAGCATTGCAGGTTTTCTGATAGATCGTAGCTAAGGAAAGGAAATGAATAAAAATTTTAAGTATATGGATTTCTATCTGGATCAACTTGATTCAGTAAATGAGTTAAAAATAGAACTTGATGAGTAATTTCTAGTAGATGTTGGTAAAGTTTGTGCAGAAATTCCAGAAAGTATAAAATGTAGAGACAAAGGATGGAGTAGCATTTTAGTCTTCTTCCGAGACATCTTCGACTGATGTTTTATACATAATATTTGATTTGGCAAATGGCATACCCTCTTGATAAAAAAACAGGACTGATCCTTTTTGCACCAACAAGAGAATTGACTAGGAAAAATACAGAATAGAGACACTTGAGAATTAAAAAGAGTAGTTGAGACCTAGCAAAGAAAGGATCAACAAACTCCTTTTGTTGATGATTGCTGTGTCATGAAATAACAGTATTTATTTTTAAGTGTGATATACAGTTAAAAAACCACAATTTATTTATAAGTGTTGAGATACACTACAAAAATCATAAATTTGTACAAATATAATCAATGATTGTGTTGAACATTTGTTATAACGGCTCTTGATTTTTGGATGGTTCGTTTAGTGGGTGTGCCTTATCTTTTGCCTTTTGTCAACACCATCAATTTCCAAATGGGACCAACTCGATTCCTTGAATTGTCCTTATCATTATTTCCAAAAATGTGATTCAATGCAACAAATTTGTATAATATGTTTGACAACATTAGTGTCATGGTAAGGATGATTTCACTAACATGTTGATTGGATTAAAGAAGCAACTTAGGGGTATCGGGGTAGCCCAAATGAGTAAAAAAGGATTAGTGGTGAAATGGAGGGGTCTAAGGAAAAGTGGTATCCAAGAAGGTTAGATGGTTGAGAAGGATGTGAAGCTAGCGGTTACAACTACTAAATGACAGTTTTTGAGTTCATGTATGAGGAGCTTGAATGCAAAGGCAGGTATATAAAGTTGTATAAGCTTGCCAAGGTGATAGAGGAGGGCATGTAACCTAGGCCAAGTGAAGTGCATCAAGGATGATAATGACAAAGTGTTGGTGAAGAAGAGCCACATATTATAAAATAAAAAACCTACCCGATTATTTTGTATGGCTACAGATTTATATAAAAGTTTTTTTGTTTTAGTAAGAGAAACCTAATAATCATTTCACTTAGTAAATGGTTTTTTAAAAACCATGGACACCTCTACATTAGGGAAACTATAGATTGTACGATGGAGTTAAAATAATGGAGGTGACTCAATATCCTTCTCAATCATGATGGGATTGCATCAGGGATCACCCTTAGTTCATTCCTATGTGCCTTGGTGATGGATGAATTGACACGACATATTCAAGGGAAAGCATCGTGGATTATTTATTCTCATATACAATATTGATTGATGAGACGCACAGTGGAGTTAACGACACGTTGGAAGTTTGGAGAGAAACCTTAGAGTCTAAAGTTTCAGCTGAAGTAGGACTATGTGTAGTACCTGGAATGCAAGTTTAGTGAAAATTGATGCACAAGTTATACCCAAGAAAGGAAGTTTCAAGTATCTTCGAACCATAATCCAAGGAAACAAGGAGATTACTGATGATGTCTCACATCATATTAGAGTAGGGTGTATGAGATAGAGGCTTGCATTTGTGGTATTGTTCCATAAGAATGTGTCACCAAGCTTTAAAAGTAAGTTCTACCGGGTAGTGGTTAGACCAACTGTGTTGATGTGGCTAAGTGTTTGGACATTCAAGAAGATACAGTTCAGAAGATGAATGTAGGAGAGATGAAGATGGTCATATCAATGTGTGGGCAAACTAAAAGAGATTAGATTAGAAACAAAGTTATATTGGGTATGGTAGGAGTGGCCCTCGTTGCGGACAAGATGAAGAAGGTGAGGCTGAGATGATTCAAACATATGAAAAGAGGTGTCTGGATGTGTATCTATGGAGGTGTTAGCGTGGTATTTAGGTGAGGTAGAGATAGACCGAAGAAGAATTTGGGGAGGTGATTAGACAAAGACATGACACAACAACATGACAGGAAGGCTGATGATTACGGTAGAAGGTTAGTAGGTAGAAAAGTGTTGTCACACTATATATGGGAAAGGCAGCGGGCCAACCTCCTCTCGTCTCATTCTTATTAGTTGTAATATTTACTAATCGTATAATGTATCTTATTCTTCAATGTGTATTACTATTTGTTGCTTCATTTTTTTTTTCTTGCGATCCTACTTCAGTATACTTCGGAAACTTCTCGTTTGAGCCGAGGGTCTATCAGAAACAACCTCTCTACCCACGCAAAGGTATGGGTAAAGTTTGTGTACATTCTGCCCTCTCCAAAACCCCACTTGTGGGATTACACTGGATATGTTGTTGCTAACAATTTCCTTGATGATCAGTTTATGGCTTAAAGTAATGCTGGTTTTTGAAACAGTAATGGTTCTCGTATTCTCCAAGGTTTACCTTGTGCATCTTATTAGTCATGTAATGGAATGTGTGGAATTTTGCACAAGTATGATCTTGCTTTATGTGGATCTTCTTTCTCGCCTAAAATTAGATTCAGTCGGAAAAAAGAACCATGAAAATATGCCTGTGGCCTGCTTCGCTAGTTACTCAAATAACCTCCCGCTTTCAAAAATATTGGCAGAGAGTGACCATGGTCCCTAACCATTATCCGTGGAAATATAGGTTGTGTCTTAGCAGGGGATCTTTTCCCTTGTGGAGTTTTTTTTTCCTGTAGTTCCTTAATGTTCTTAGGGATCTGATTTGTGAGTATAGGTTTAGCTATAACATTTTCTTATCTAATAGAATATGCTGATAATTTACGGCTTTGTTGATAACAGCTGCACGAATGTGTTGGATCAGCTGTTGGTGCAATGGGACCTGAATCTTTTCTTACTCTTCTTCCTCTTAAACTGGATGTACAAGATCTGTCAGAGTCCAACATCTGGCTTTTCCCAATTCTAAAGCAAAATATTGTTGGTGCGCATTTAAGTTTCTTTACCAACTCAATTTTGCCAATGGTTGGAGCTATGAAGCAGAGGTCTGCAATGGTATGTTTGATGCTAAATCACACTCCCCCTCACCCCCTACACACACACACACTTTTTCTTTTATTTACATGGTGAGCTCATTCTTATGTTTTCTGCCAGCTTGAGCGCGAGGGAAAGATATATTCAGCAAGAACTATTGATGGAATTGTGTACTCATTGTGGTCACTGTTACCCTCATTTTGCAATTACCCTGTCGACACTGCTGAAAGCTTCAAGGATCTGGAGAAGGTATTCCGCAAAGCTCTACATGAAGAGCCTGATGTTTGTGGGATAATATGCTCCAGTTTGCAGATCCTCGTTCAGCAGAATGATAGCATTTTAAAAGGGACAGTTGATCTGTCTGATACTGAAACAAAC</genome_strand>
        <mrna_strand>GAAGCTATAAGGGCTGCGCTGGAGGCACTCAAGATTTTAATACATGAATGCATTGATGAAAACTTGATCAAACAGGGTGTGGATAACATAATTAGTTCGAATACTGATGCGAAAAAATCTGGACCAACTATCATTGAGAAAATCTGTGCCACAATTGAGAGCTTGCTTACCTATCACTATGCAGCAGTTTGGGACATGTCATTTCAAGTGGTGGTTGCCATGTTTGATAAGCTAG........................................................................................................................................................................................................................................................................................................................................................GTTGCTATTCTTCTCACCTTCTGAAGGGAACACTACAGAGTTTGGCTGATATGGAAAAGTTGCCAGATGAAGACTTCCCTTTCCGTAGACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCACGAATGTGTTGGATCAGCTGTTGGTGCAATGGGACCTGAATCTTTTCTTACTCTTCTTCCTCTTAAACTGGATGTACAAGATCTGTCAGAGTCCAACATCTGGCTTTTCCCAATTCTAAAGCAAAATATTGTTGGTGCGCATTTAAGTTTCTTTACCAACTCAATTTTGCCAATGGTTGGAGCTATGAAGCAGAGGTCTGCAATG...................................................................................................CTTGAGCGCGAGGGAAAGATATATTCAGCAAGAACTATTGATGGAATTGTGTACTCATTGTGGTCACTGTTACCCTCATTTTGCAATTACCCTGTCGACACTGCTGAAAGCTTCAAGGATCTGGAGAAGGTATTCCGCAAAGCTCTACATGAAGAGCCTGATGTTTGTGGGATAATATGCTCCAGTTTGCAGATCCTCGTTCAGCAGAATGATAGCATTTTAAAAGGGACAGTTGATCTGTCTGATACTGAAACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322112" ref_strand="+" ref_description="SGN-U322112        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | invertase/pectin methylesterase inhibitor family protein, low similarity to pectinesterase from Arabidopsis thaliana SP:Q42534, Lycopersicon esculentum SP:Q43143; contains Pfam profile PF04043: Plant invertase/pectin methylesterase inhibitor | chr5:7025688-7026534 REVERSE | Aliases: T1M15.140, T1M15_140(evalue: 5e-43, score=171) genbank/nr: gi|21553812|gb|AAM62905.1| ripening-related protein-like [Arabidopsis thaliana](evalue: 4e-41, score=171)">
      <seq>ggcgattggcggccaatcggccgaattggcaattaaataaatcacagctaatccttgcccccctctctcttttttttgtctcccacataaatcataatacaatacaatactttgcttcctaccaacacatacattcacaaaaatgatgaaaactctacttgtttctctgtttctaatttcatcagtgactacatcatcatcttcttctgctagtgacattgtccgctcttcctgcgtgcacgccagctatcccacaatttgcgtcagaacactctcttcatactcggacacacccattaacaccccgcaggatttagctcaagccgcggtgaaaattaccctttctcgagcaggtaaagcgtctgggttcctgtctcgggtgaaagtggaaagcaaaagagagaaaggggcattgagtgattgtatcgaacagatgggtgactcgatggaggagctgaggaagagtttgtcagagcttaaacatgtacgcaggggaaatgcatttaagtggcaaatgagcaatttggagacgtgggtaagtgctgctttgacaaatgaagatacatgtcttgatggattcaaggaaattgatggcaaaatcaggtctgatgtgaaacgaaagattacgaatgttgctagagttactagtaatgcactttaccttatcaatcgactggatgattctgcaaacaaaattactcatccttgatcattaattcggttaattaacattaccgggagaaataatagcgagagcttaatgcatttggttgttctttcttctttttctgcggtaactatgcattttattggttagaaaccagtattattaatggtgcaatatttataaaaaaaaaaaaatctaaattccaatttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0025K09.1" temp_strand="-" temp_description="C07HBa0025K09.1  AC212608.1 htgs_phase:1 submitted_to_sgn_as:gi|158262104|gb|AC212608.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="44781" stop="43331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44481" g_stop="43631" g_length="851"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="879" r_length="851" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.1" gen_strand="-" ref_id="SGN-U322112" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44481" e_stop="43631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTAAATAAATCACAGCTAATCCTTGCCCCCCTCTCTCTTTTTTTTGTCTCCCACATAAATCATAATACAATACAATACTTTGCTTCCTACCAACACATACATTCACAAAAATGATGAAAACTCTACTTGTTTCTCTGTTTCTAATTTCATCAGTGACTACATCATCATCTTCTTCTGCTAGTGACATTGTCCGCTCTTCCTGCGTGCACGCCAGCTATCCCACAATTTGCGTCAGAACACTCTCTTCATACTCGGACACACCCATTAACACCCCGCAGGATTTAGCTCAAGCCGCGGTGAAAATTACCCTTTCTCGAGCAGGTAAAGCGTCTGGGTTCCTGTCTCGGGTGAAAGTGGAAAGCAAAAGAGAGAAAGGGGCATTGAGTGATTGTATCGAACAGATGGGTGACTCGATGGAGGAGCTGAGGAAGAGTTTGTCAGAGCTTAAACATGTACGCAGGGGAAATGCATTTAAGTGGCAAATGAGCAATTTGGAGACGTGGGTAAGTGCTGCTTTGACAAATGAAGATACATGTCTTGATGGATTCAAGGAAATTGATGGCAAAATCAGGTCTGATGTGAAACGAAAGATTACGAATGTTGCTAGAGTTACTAGTAATGCACTTTACCTTATCAATCGACTGGATGATTCTGCAAACAAAATTACTCATCCTTGATCATTAATTCGGTTAATTAACATTACCGGGAGAAATAATAGCGAGAGCTTAATGCATTTGGTTGTTCTTTCTTCTTTTTCTGCGGTAACTATGCATTTTATTGGTTAGAAACCAGTATTATTAATGGTGCAATATTTATAAGGTAAGAATTATCTAAATTCCAATTTGGC</genome_strand>
        <mrna_strand>GCAATTAAATAAATCACAGCTAATCCTTGCCCCCCTCTCTCTTTTTTTTGTCTCCCACATAAATCATAATACAATACAATACTTTGCTTCCTACCAACACATACATTCACAAAAATGATGAAAACTCTACTTGTTTCTCTGTTTCTAATTTCATCAGTGACTACATCATCATCTTCTTCTGCTAGTGACATTGTCCGCTCTTCCTGCGTGCACGCCAGCTATCCCACAATTTGCGTCAGAACACTCTCTTCATACTCGGACACACCCATTAACACCCCGCAGGATTTAGCTCAAGCCGCGGTGAAAATTACCCTTTCTCGAGCAGGTAAAGCGTCTGGGTTCCTGTCTCGGGTGAAAGTGGAAAGCAAAAGAGAGAAAGGGGCATTGAGTGATTGTATCGAACAGATGGGTGACTCGATGGAGGAGCTGAGGAAGAGTTTGTCAGAGCTTAAACATGTACGCAGGGGAAATGCATTTAAGTGGCAAATGAGCAATTTGGAGACGTGGGTAAGTGCTGCTTTGACAAATGAAGATACATGTCTTGATGGATTCAAGGAAATTGATGGCAAAATCAGGTCTGATGTGAAACGAAAGATTACGAATGTTGCTAGAGTTACTAGTAATGCACTTTACCTTATCAATCGACTGGATGATTCTGCAAACAAAATTACTCATCCTTGATCATTAATTCGGTTAATTAACATTACCGGGAGAAATAATAGCGAGAGCTTAATGCATTTGGTTGTTCTTTCTTCTTTTTCTGCGGTAACTATGCATTTTATTGGTTAGAAACCAGTATTATTAATGGTGCAATATTTATAAAAAAAAAAAAATCTAAATTCCAATTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337538" ref_strand="-" ref_description="SGN-U337538        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | invertase/pectin methylesterase inhibitor family protein, low similarity to pectinesterase from Arabidopsis thaliana SP:Q42534, Lycopersicon esculentum SP:Q43143; contains Pfam profile PF04043: Plant invertase/pectin methylesterase inhibitor | chr5:7025688-7026534 REVERSE | Aliases: T1M15.140, T1M15_140(evalue: 2e-44, score=176) genbank/nr: gi|21553812|gb|AAM62905.1| ripening-related protein-like [Arabidopsis thaliana](evalue: 2e-42, score=176)">
      <seq>ctgccaacagcctattaacacattcattcacaaaaatgatgaaaactctacttgtttctctttttctaatttcatcagtaactacatcttcttcttctgttagtgacattgtccgctcttactgcgtgcacgccagctatcccacaatttgcatcagaacactctcttcatactcggactcacccattaacaccccgcaggatttagctgaagccgcggtgaaaattaccctttctcgagcaggtaaagcgtctgggttcctgtctcgggtgaaagtggaaagcaaaagagagaaaggggcattgagtgattgtatcgaacagatgggtgactctgtggaggagctgaggaagagtttgtcggaacttaaacatgtacgcaggggaaatgcatttaagtggcaaatgagcaatttggagacgtgggtaagtgctgctttgacaaacgaagatacatgtcttgatggattcaacgaaattgatggcaaaatcaggtctgatgtgaaaagaaagattactaatgttgctagagttactagtaatgcactttaccttatcaatcgactggatgattctccaaacaaaattactcatttcggttaattaacattaccgggagaaacaatagcaagcatttggttgttctttcttctttttcagcggtaactatgtattttatatgttagaaacgcagtattattaatggtgcaatatttataaggtaagaaaaggggaaattccaatttggccttgttctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0025K09.1" temp_strand="-" temp_description="C07HBa0025K09.1  AC212608.1 htgs_phase:1 submitted_to_sgn_as:gi|158262104|gb|AC212608.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="44692" stop="43352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44403" g_stop="43659" g_length="745"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="757" polyA_stop="773"/>
      <MATCH_line gen_id="C07HBa0025K09.1" gen_strand="-" ref_id="SGN-U337538" ref_strand="-">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337538" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44403" e_stop="43659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTTTGCTTCCTACCAACACATACATTCACAAAAATGATGAAAACTCTACTTGTTTCTCTGTTTCTAATTTCATCAGTGACTACATCATCATCTTCTTCTGCTAGTGACATTGTCCGCTCTTCCTGCGTGCACGCCAGCTATCCCACAATTTGCGTCAGAACACTCTCTTCATACTCGGACACACCCATTAACACCCCGCAGGATTTAGCTCAAGCCGCGGTGAAAATTACCCTTTCTCGAGCAGGTAAAGCGTCTGGGTTCCTGTCTCGGGTGAAAGTGGAAAGCAAAAGAGAGAAAGGGGCATTGAGTGATTGTATCGAACAGATGGGTGACTCGATGGAGGAGCTGAGGAAGAGTTTGTCAGAGCTTAAACATGTACGCAGGGGAAATGCATTTAAGTGGCAAATGAGCAATTTGGAGACGTGGGTAAGTGCTGCTTTGACAAATGAAGATACATGTCTTGATGGATTCAAGGAAATTGATGGCAAAATCAGGTCTGATGTGAAACGAAAGATTACGAATGTTGCTAGAGTTACTAGTAATGCACTTTACCTTATCAATCGACTGGATGATTCTGCAAACAAAATTACTCATCCTTGATCATTAATTCGGTTAATTAACATTACCGGGAGAAATAATAGCGAGAGCTTAATGCATTTGGTTGTTCTTTCTTCTTTTTCTGCGGTAACTATGCATTTTATTGGTTAGAAAC-CAGTATTATTAATGGTGCAATATTTATAAG</genome_strand>
        <mrna_strand>CTGC-CAACAGCCTATTAACACATTCATTCACAAAAATGATGAAAACTCTACTTGTTTCTCTTTTTCTAATTTCATCAGTAACTACATC-T--TCTTCTTCTGTTAGTGACATTGTCCGCTCTTACTGCGTGCACGCCAGCTATCCCACAATTTGCATCAGAACACTCTCTTCATACTCGGACTCACCCATTAACACCCCGCAGGATTTAGCTGAAGCCGCGGTGAAAATTACCCTTTCTCGAGCAGGTAAAGCGTCTGGGTTCCTGTCTCGGGTGAAAGTGGAAAGCAAAAGAGAGAAAGGGGCATTGAGTGATTGTATCGAACAGATGGGTGACTCTGTGGAGGAGCTGAGGAAGAGTTTGTCGGAACTTAAACATGTACGCAGGGGAAATGCATTTAAGTGGCAAATGAGCAATTTGGAGACGTGGGTAAGTGCTGCTTTGACAAACGAAGATACATGTCTTGATGGATTCAACGAAATTGATGGCAAAATCAGGTCTGATGTGAAAAGAAAGATTACTAATGTTGCTAGAGTTACTAGTAATGCACTTTACCTTATCAATCGACTGGATGATTCTCCAAACAAAA-T--T-A--C----TCA-T--TTCGGTTAATTAACATTACCGGGAGAAACAAT------AGC--AA-GCATTTGGTTGTTCTTTCTTCTTTTTCAGCGGTAACTATGTATTTTATATGTTAGAAACGCAGTATTATTAATGGTGCAATATTTATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322784" ref_strand="+" ref_description="SGN-U322784        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: AT1G74960.1 | Symbol: None | 3-ketoacyl-ACP synthase, putative, similar to 3-ketoacyl-ACP synthase (Cuphea pulcherrima) gi:3800747:gb:AAC68860; identical to cDNA beta-ketoacyl-ACP synthetase 2 nuclear gene for plastid product GI:14582700 | chr1:28156033-28159872 REVERSE | Aliases: F25A4.7, F25A4_7 (evalue: 5e-71, score=264) genbank/nr: gi|3800747|gb|AAC68860.1| 3-ketoacyl-ACP synthase [Cuphea pulcherrima](evalue: 2e-71, score=271)">
      <seq>ctctaatttccttatattctaccgccttcttaaaaaatgaacatctcctcccgggtgggtcccgcacccctgttatccccttctttcatctttagagttcaaagtatatataatatataaagggcttgtatagtttgatcggaattttaagaaaatggcgtcatcgacggtatcgtcatggatgattgggtcatgcatgtcagttcctggtaaaaaggagcatgaattacatggtttttttgggatttataagtctaaatgcaaatgggctattccaagtaaaacaaccaaaggggttttcataaactccaaatccaatagtgctcttacatttccaatctcttcttctttcttgtctcaacctaaccttaccattactggattttcctcttccaattcctgctttctctttaccggatccgcagctaatcctcctccaacaaaaattatctcttatgctcaaacaggggaggtaatggcaattgcatccgaatcggccatggaagccgcaccaaagaagaaacctccaaccaaggaaaggcgagttgttgtgacagggatgggtgtggccacatcagttggtcatgatccccacacgttttatgaaaacctgcttgaaggtgtcagtggcataagtgaaatagaagcttttgattgttctcagtatccaacaagaattgctggagagatcaagtctttctcaactgatggctggattgtacccaaactttctaaaagaatggacaagttcatgctttacatgctaacggctggtaagaaagcactctcagatggtggaattactgaagacatgatggatgaattggataaaagaagatgtggagttttaattggctctgctctgggtgggatgaaggttttcaatgatgcaatagaggctctaagggtttcctataggaagatgaatcctttctgtgttccatttgcaactacaaacatgggttctgccatgcttgccatggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0025K09.1" temp_strand="+" temp_description="C07HBa0025K09.1  AC212608.1 htgs_phase:1 submitted_to_sgn_as:gi|158262104|gb|AC212608.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="50902" stop="53578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51202" g_stop="51589" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="467" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51590" i_stop="52415" i_length="826">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52416" g_stop="52621" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="673" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52622" i_stop="52696" i_length="75">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52697" g_stop="52900" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="877" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52901" i_stop="53169" i_length="269">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53170" g_stop="53278" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="878" r_stop="986" r_length="109" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.1" gen_strand="+" ref_id="SGN-U322784" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51202" e_stop="51589"/>
          <exon e_start="52416" e_stop="52621"/>
          <exon e_start="52697" e_stop="52900"/>
          <exon e_start="53170" e_stop="53278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTCATCTTTAGAGTTCAAAGTATATATAATATATAAAGGGCTTGTATAGTTTGATCGGAATTTTAAGAAAATGGCGTCATCGACGGTATCGTCATGGATGATTGGGTCATGCATGTCAGTTCCTGGTAAAAAGGAGCATGAATTACATGGTTTTTTTGGGATTTATAAGTCTAAATGCAAATGGGCTATTCCAAGTAAAACAACCAAAGGGGTTTTCATAAACTCCAAATCCAATAGTGCTCTTACATTTCCAATCTCTTCTTCTTTCTTGTCTCAACCTAACCTTACCATTACTGGATTTTCCTCTTCCAATTCCTGCTTTCTCTTTACCGGATCCGCAGCTAATCCTCCTCCAACAAAAATTATCTCTTATGCTCAAACAGGTAAATTCTGGCTTTTATGCTTGATGAGTGCCCTTTTCATTTGTTTCGTTAAAATTAAGGATGGCTGGAACTGGAGATGCATTTGTTATTTTGGAGTCTGTTTATTCTCAAGGTTGCATGGTTGATTTTTATAGCTAGTTAGTGAGTGTTTGCTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTACATTTTAAACAGACCCAGGTTGGTGAAATTGAATTGGGTTTATTGACTTGTTCATTTTGGCATTGCGTGTCATGTGAAAAGAGTGATGGATCATGCAATTTGTTTGTTGCTTAATATCTACAAACTTGTTTCTTGTTGGATTTTTAGATCATGCATCAACACCTCCCAACTGTGTTTCTTGGTTGTTTCTTTGGGCTATCATTAGTGTCTTTCTCATACTTGAAACCATTTGTTGGTTCTTATCAAAAGTTTGGTTGGGTAATAAAACATAAGTACTTATGATGATCATACAAGGTGGAAGATAAAATATGTGCATAACGTTGTGTGATATTTTCTTTTAGTATTAGAGATGAGAACAGCTTGTTGAAACAAGTTGAAGAGTTGTAGTTTTTGGCTGGACATAAAGGAATTCATTGTCCCCTTCTTTCTTTTTTTTTTTTTTTGTAGAAAATGGTTACTTTGTGTTGACCAAATGTTAGAAAATGATTTTAGATTTTTGGAAAATACTATCATTTTTCTGTATCAAGCTACACGATTGGGTTTTCTCTGGAGTACTGCCACAGAACTACAAAGTTGTGAATTTCTACATCATTTTGTAATACACATAGATTTTGATGTATTTGGCCACTCCTTGTACAGGGGAGGTAATGGCAATTGCATCCGAATCGGCCATGGAAGCCGCACCAAAGAAGAAACCTCCAACCAAGGAAAGGCGAGTTGTTGTGACAGGGATGGGTGTGGCCACATCAGTTGGTCATGATCCCCACACGTTTTATGAAAACCTGCTTGAAGGTGTCAGTGGCATAAGTGAAATAGAAGCTTTTGATTGTTCTCAGTATCCAACAGTACGTCTTCTTCTTGAGCCTCTTTTCCCTTCAACTTTAGTTATTTACATGTTGGTAATGAGGTACTTACCGCAGAGAATTGCTGGAGAGATCAAGTCTTTCTCAACTGATGGCTGGATTGTACCCAAACTTTCTAAAAGAATGGACAAGTTCATGCTTTACATGCTAACGGCTGGTAAGAAAGCACTCTCAGATGGTGGAATTACTGAAGACATGATGGATGAATTGGATAAAAGAAGATGTGGAGTTTTAATTGGCTCTGCTATGGGTGGGATGAAGGTGATCCACTTTCTTTTTCTTTAATCACAAATCTGATGAAAATTTCGCTGGTCAAATATGCCAACTTTCTTATTCCATTTTACTTTGTTATTTATGTCCTGGGATCAGCTCTCTTTGGTCTCCAACACCTCAAATATAATTGAGCAACAGCTTGTACATGATTGCCCAGCACTGAAATCTCCTCAGAGAGAATCCCTATGCAGACCAGTAGTCTTTGCTAGAACCAAGCTAAGTGACTACTCACTAACTGATTTGCTTTTCTTGAGCAGGTTTTCAATGATGCAATAGAGGCTCTAAGGGTTTCCTATAGGAAGATGAATCCTTTTTGTGTCCCATTTGCAACTACAAACATGGGTTCTGCCATGCTTGCCATGGACC</genome_strand>
        <mrna_strand>CTTCTTTCATCTTTAGAGTTCAAAGTATATATAATATATAAAGGGCTTGTATAGTTTGATCGGAATTTTAAGAAAATGGCGTCATCGACGGTATCGTCATGGATGATTGGGTCATGCATGTCAGTTCCTGGTAAAAAGGAGCATGAATTACATGGTTTTTTTGGGATTTATAAGTCTAAATGCAAATGGGCTATTCCAAGTAAAACAACCAAAGGGGTTTTCATAAACTCCAAATCCAATAGTGCTCTTACATTTCCAATCTCTTCTTCTTTCTTGTCTCAACCTAACCTTACCATTACTGGATTTTCCTCTTCCAATTCCTGCTTTCTCTTTACCGGATCCGCAGCTAATCCTCCTCCAACAAAAATTATCTCTTATGCTCAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGTAATGGCAATTGCATCCGAATCGGCCATGGAAGCCGCACCAAAGAAGAAACCTCCAACCAAGGAAAGGCGAGTTGTTGTGACAGGGATGGGTGTGGCCACATCAGTTGGTCATGATCCCCACACGTTTTATGAAAACCTGCTTGAAGGTGTCAGTGGCATAAGTGAAATAGAAGCTTTTGATTGTTCTCAGTATCCAACA...........................................................................AGAATTGCTGGAGAGATCAAGTCTTTCTCAACTGATGGCTGGATTGTACCCAAACTTTCTAAAAGAATGGACAAGTTCATGCTTTACATGCTAACGGCTGGTAAGAAAGCACTCTCAGATGGTGGAATTACTGAAGACATGATGGATGAATTGGATAAAAGAAGATGTGGAGTTTTAATTGGCTCTGCTCTGGGTGGGATGAAG.............................................................................................................................................................................................................................................................................GTTTTCAATGATGCAATAGAGGCTCTAAGGGTTTCCTATAGGAAGATGAATCCTTTCTGTGTTCCATTTGCAACTACAAACATGGGTTCTGCCATGCTTGCCATGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325875" ref_strand="+" ref_description="SGN-U325875        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT1G74960.1 | Symbol: None | 3-ketoacyl-ACP synthase, putative, similar to 3-ketoacyl-ACP synthase (Cuphea pulcherrima) gi:3800747:gb:AAC68860; identical to cDNA beta-ketoacyl-ACP synthetase 2 nuclear gene for plastid product GI:14582700 | chr1:28156033-28159872 REVERSE | Aliases: F25A4.7, F25A4_7 (evalue: 7e-130, score=460) genbank/nr: gi|2921211|gb|AAC04692.1| beta-ketoacyl-ACP synthase II [Perilla frutescens](evalue: 7e-134, score=480)">
      <seq>gtttcctataggaagatgaatcctttttgtgtcccatttgcaactacaaacatgggttctgccatgcttgccatggacctgggatggatgggtccaaattattcaatttcaacagcatgtgcaacaagcaacttctgcatattgaatgccgctaaccacatcattagaggtgaagctgacatgatgctgtgtggtggatcagatgcagcaattataccaattggattgggaggatttgttgcttgcagagcactttcacagagaaataccgacccttcaagagcttctcggccttgggatagtaatcgcgatggatttgtcatgggtgaaggagctggtgtcctgcttctggaagaacttgagcatgccaagcaaagaggtgcaacaatctatgctgaatttctaggtggaagttttacttgtgatgcttatcacatgactgagcctcatcctaaaggaactggagtcatcctatgtgtagagaaggcattagctcagtcaggggtatccaaggaagatgtgaactacattaatgcgcatgcaacatccacaccagcaggagatcttaaggagtatcaagctcttgttcattgttttggccaaaatccagagttgcgagttaactccacaaaatctatggttggtcacctgcttggagctgctggtgctgttgaggctgtggcaactatccaggcaatacgaactggttgggttcatccaaatattaatcttgaaaacccagatgaaggcgtggatacaaatatacttgttggtcccataaaggaacgactggatattaaggtggcattatctaattcatttggatttggtggccacaactcatcaatcttatttgctccttacaagtagatctctcaaacaatgttgatgcatctgacagatacaaggaatatttggaaggatccttgattcccagagttacttgaaggacactcgtagaagaggcctcagtctcgaagaatttgttttcaggaagatagtctaatgacgggggtacttccctctgatatacagaatttgattgttggagaaagaagatgccgaagcaaagaatggggggaggatcaagttttttttatctccatttcttttagctaaattatacttacttaactaaattgtttctcttacacatagcagcaaatgacccttaggtgtttgcatatgggccttaatgctagtgtactagtttctttgtataccatatatattttgcaaattggacttcttgatatttgaatgaaaaaactctgaaggacttcctcaaaaaaaaaccccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0025K09.1" temp_strand="+" temp_description="C07HBa0025K09.1  AC212608.1 htgs_phase:1 submitted_to_sgn_as:gi|158262104|gb|AC212608.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="52900" stop="65500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53200" g_stop="53280" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53281" i_stop="53372" i_length="92">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53373" g_stop="53468" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="177" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53469" i_stop="53626" i_length="158">
            <donor d_prob="0.407" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53627" g_stop="53672" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="223" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53673" i_stop="53778" i_length="106">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53779" g_stop="53858" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="303" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53859" i_stop="54480" i_length="622">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54481" g_stop="54549" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="372" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54550" i_stop="54686" i_length="137">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54687" g_stop="54771" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="457" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54772" i_stop="57095" i_length="2324">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="57096" g_stop="57250" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="612" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="57251" i_stop="57347" i_length="97">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="57348" g_stop="57428" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="693" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="57429" i_stop="61904" i_length="4476">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="61905" g_stop="61964" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="753" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="61965" i_stop="62415" i_length="451">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="62416" g_stop="62570" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="908" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="62571" i_stop="64813" i_length="2243">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="64814" g_stop="65208" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="909" r_stop="1302" r_length="394" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1303" polyA_stop="1313"/>
      <MATCH_line gen_id="C07HBa0025K09.1" gen_strand="+" ref_id="SGN-U325875" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1303</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53200" e_stop="53280"/>
          <exon e_start="53373" e_stop="53468"/>
          <exon e_start="53627" e_stop="53672"/>
          <exon e_start="53779" e_stop="53858"/>
          <exon e_start="54481" e_stop="54549"/>
          <exon e_start="54687" e_stop="54771"/>
          <exon e_start="57096" e_stop="57250"/>
          <exon e_start="57348" e_stop="57428"/>
          <exon e_start="61905" e_stop="61964"/>
          <exon e_start="62416" e_stop="62570"/>
          <exon e_start="64814" e_stop="65208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCTATAGGAAGATGAATCCTTTTTGTGTCCCATTTGCAACTACAAACATGGGTTCTGCCATGCTTGCCATGGACCTGGTTAGCCAAAGTTTTAAATTTTCAGTTATTACCTGTGATGTATGAATAAGTAACGCCCAGCTTTGTGTGCCTTCTTACAAATTCAATCGTAGGGATGGATGGGTCCAAATTATTCAATTTCAACAGCATGTGCAACAAGCAACTTCTGCATATTGAATGCCGCTAACCACATCATTAGAGGTGAAGCTGTAAGTTTCAAGCCTTTAAGTCATAGAAAGCTGTAGGAAGCAGAGGATTCAGTTTCGTCTTACCGTTGTTCACGGAGTTCCTTATACATAGACAGATGACTCCAAGACTTAACATTCTTAGTAGCTTAGTTCTCTCTTTTTACACAATGACAATGCAGGACATGATGCTGTGTGGTGGATCAGATGCAGCAATTATACCAATTGGTATGTACCTGTTCTCTTTTACCAGAAGTTTAGCCTATCAAGCTGAGGTTGTAAAACTATTGTTTTATATAACTTTATCTTATTTCGTTTTTTGTTACTTATGCAGGATTGGGAGGATTTGTTGCTTGCAGAGCACTTTCACAGAGAAATACCGACCCTTCAAGAGCTTCTCGGCCTTGGGATAGTGTAATGTCTTGTAATCTTTTGCTCTTGTTCCTCTGCTTTCTGTCTAGTTGTTAGCACAAAATTTTGTGGAATGGAGTGGTGATTCTAGTGTACTCGAGATATTCCTGTTGCAGTTCTTCAGTATGGGACAAGTAGGAAATTAGAAATATTCGACTTTGAATTTTTCTCCTGTTTACTGAGTGAGTTATGCATATCTCAATTTGCAATGTCCATTCCATGAGATTGAACTTGTGTGGCATATTTTCTTCAGAATTTATAATTATGTAGCTCCATTGGCACTCATGTGGACTTTGTGGAAGAGAGACATATAAGATATTTTGTAGGAACTGAAAACTCCTGTTTTATATTGGTGGAATATTCATATTTTGAGTGTACTTTTGGAGCAAATATGATATTCCAATCACCATGGACGATAGGATGCACTTTACAGAGAATCATGACCTTTTATGGGATTCTCAACTTTTTGCATACATCTTATGTGCCTGTGTTAATTGCTATTCAATGACTTGTTAGATGAAGCAAAAGCACTACAAAATTTAAAACCAATCCTTTTTCTGGTTGTGCGTGTGTAGCATATTTAGTAAGATTGCTTCCTTCTTATTTTTATTTTAATCCTGGATAGAATCGCGATGGATTTGTCATGGGTGAAGGAGCTGGTGTCCTGCTTCTGGAAGAACTTGAGCATGCCAAGGTGATATATGCTTCAAAATCAATAAATGCTTTCTTGCTCACCCGCTTGTTGATCCTCAAACAGATAATATGAAAGATAAAAAGCCAATTCTGGGTCATATAATTGTTTTAAGTTTTCTTTTTATATTTCATGAGCAGCAAAGAGGTGCAACAATCTATGCTGAATTTCTAGGTGGAAGTTTTACTTGTGATGCTTATCACATGACTGAGCCTCATCCTAAAGGTAATTTCTCTCATATATATATTCTTGATTTTATCCTTTGGGGTGGCCTAGTGGTTTGGGCTTGGACTTCCATGTTAGAGGTTTCAAGTTCGAAACCCATTGTCTATAAAAGCAAGGGGTTTGCCTTGGTTGAGCTCGTCGCACCGGGCTTGCCTGATTTGCGAGCTATTGCATAGGAGTGGGGGGTTTGCCTTGGGCGCACCCAAAGGGTAGCGACTGTGGGTTGCTCTTGTCATAAAAAATATATATTCTTAATTTGCGTAGATGTGTCCATTTTGAATGGGCGTGACATAGATATTCTTCTTGTGGACCTTTAAACTCAGTAAAACTTAGCAAAAATTGCATTTACTCATACCAGAGAGTTATACGGTTATGCACATCCTTATCGTATCCATATGGGTGCAGAAATCTATATCATCCAAAAACTGTATAGTTCTCTTGTGAAGCCACTCAGTTGTTGGGGTTCTTTTTCATTGGTTAATAAGATAGAGTTAATTAGATAGAGTTAGTAAGATTTCTCAAGAAACGAAGATCAATGTAGCTTGAGTCTAAGAAACCAAATGGGTAGGAACCAAGACTAGGGATGTAGACGGGTTTAAGTTGTGGTAATCAGAAAGCTTGGGGCACAGATATTTTAGTAGTCAAGGAACTCAGGGAGCAAGTGGTAGAGGTTAGGAGGATGAATGACATGATGATGGCCATTAAACTAGCTTTGTGAGGGCTCACTTTTAACATTATTTGTGCATATGCGATTTTTGTGGGTTTGGACGAGGAGATCAAAAAGCACTTCTAAAAGGAGTAGGATGAGGTTATCAGAGGTATTCGACCGACTGTGGAACTATTGTTAGGAGGAGACTTTAATGGTTACATATGGACCACTTCAACAGGATATGATGATGTTCATGGAGGTTTCAATTTTGGGGATAGAAATGAAGGAGTTTCCCTTTTAGATTGCGCAAAAGCTTTCGAGATGGTCATAGCTAACTCGAGATTCCAATAGAGGGAAGAGCACCTGGTGACCTATGCTAGTACGGTGGTTAAGACTCGGATAGATTGCGTGCTCCTTTGGAAGTGTGATAGAGGTTTATGCAAGACTGCGAGGTTATTATTGGTGAAAATTTTTCGTACTATATGCGGCTAGCCTCCTCCTTGCCTCTTCTCATGATTAGTAGTATTGTTAAGTAATTATGTAGTTTCTTATTCTTCTATGTGTATTACTATTTGTTGCTTCATTTACTTTGTATATTTGTATTTGCTTGTCATTTTTCATGGAATCCTGCTTTGATGACATCCCTTTTGAGCGAGGGTTTATGAGAAACGACCACTTTAATCCACAAAGGTAGGGGGTAAGGTCGGCGTCCATCTTCCCCTCTCTATACCCCACTCCAATAAAATTGGAACGATACAAATGTATGTTTGTCGAGCAACATCAAATGTAAGATTTACTTTTTGCATGATGAAACAGAAGCATTTTTAGGTTTAATTTACCCCTCCAACTACTAGCTGTGACATAGAGGCCTCCAAAATATGATTCCATCACTCTAACATCTTATAATCTGGAGGGGTCTAAATTTTGAGGGGAAAGTTATATGGCTAAACGGTTAGAGTAATACATCTCCTAAACCTCTTCTGTTTTCATGTTTTCTTTCTATGGCCTTAAATATCTGGTGCGTTGCTCCTTCTAACAAATATAGCAGCAGATATTCTTGAATCTGTCTATCCATCCATCTCATAAAAGGTAATGCCTCTAACCATATATAGGATTTGATCCTTTGATTATACGTTGGCTTCGTTTGAAAAAAAATATGTTTCTTTTCTTACCTAATGACTTATAACTTGCATGTTTTTCTTTAATCACCAAGATTTTGTTCCACAAGGTATTAACTCCTTTATTGACATCTTATAATAATTACATTTTATGGGATGCACGAGTCACACAAAACTCCTGATGGGTTCCTGTGTGGCCCACCTATCTTGTCATGCTTGACTTTATTCTTTTTCTCATGTCAACTGCAGATCTCGAAATAAACTGCTACTTCCTGGTTGTAGTGACTTCAATTGTATACTATTTCTTAGCTTCTTTTTCTGTTTTGCCTAAGTTGGAGATACAGTTGTACGAATCACGCCTAGTTCCTCAAGTTCTAGTATTTTTTGATAATTGTAGTTGAGAGATTCTTCCAAACCAGCTAGATATAGTTGCACAATTTGTAGCTTACTCAGAACAGAATTTAGTATAACATAATAAGAATGCACAATCTCATGTTTACTGAGATATACAATTAAGAAAGGAAACCTTTGAACTCTTCTATTCCCTAAACTAGCAGGAACTGGAGTCATCCTATGTGTAGAGAAGGCATTAGCTCAGTCAGGGGTATCCAAGGAAGATGTGAACTACATTAATGCGCATGCAACATCCACACCAGCAGGAGATCTTAAGGAGTATCAAGCTCTTGTTCATTGTTTTGGCCAAAATCCAGAGGTTAGATTGAATTTCTCTCATTTAACTACTGTGTTCATGCCAATCCTCTCAGGTTTTTGGTTCAGCTGTTTAATCAGCCACTGCTCTATGTTTTCAGTTGCGAGTTAACTCCACAAAATCTATGGTTGGTCACCTGCTTGGAGCTGCTGGTGCTGTTGAGGCTGTGGCAACTATCCAGGTGCTTTTATTTCATAACCCCTCAAAGTTTGCTGCAGCTGTGGTTCAGTTGCTTTCTAGTTTCTTGTGTAACATTTCATCCAACTATTTTCTTGCATATAGATATCCTGGCTGCAGATTCTGATATTTCTGCTTGTGTATCCTGTGGGTTGATTTGGATATTATTTTGGTGTCATACTGTTGAATAGACCAAATCATTCTGTTATTTATGTAAGCATCTAATTGAACTATATAACGTCATTAGCATCTCTACTATTTTTAGCAACCCTTTCGGGGGAATTGAAGAAGCAACAGACTTATTTGGCTTCTCATTTGTTTGTGCGCTCTAGAACTTGTTTTTTCCTTGAGAGTGAACTCGTGGCTGCTAATACAGAGAGCACAAGTGAAGCTTATTTTCTTAGAGTTTCAATTTTTCACAATTTCGTGACATGAATTGCTTTCCTTTTGAATTTGAGTTCACGTATTGATGTAATAGACAGAAAAGAATATGCATGGTTGTTAATATCAGCTGCCAGTGAAAATGCATATTTATGCCAAATAGTAGCGATGGCACGTTGTGGGACCTAAAGAAGGGGAAGCAAAGGGACTGGCTATGTTTTTACAGAGAGGAGAATTAGTAAAGGCCTAATGACCTGGTCTTGATGATGTCGAATTGTTGGTCAATGTAACCTCAAGTAGACATAAATGACTTGTAGGAATAGAAACATCAACTACCTTGGAATCTGGAAAACTAAACCTAAAAGTGTTGACGCGATCCTTTAATATTTATCTGCTTTCAAGTTCAAGAATCTCTTTACAGACGGTTATGATTTACTTCTGATCTGCCAATCTGATTTGTTGAGCATAAACCTGGCAAGAGCATCAGCAACGATTTGCTTAGGACATGCATACATAAAAATGAAGTGCATGGCAGCGTATGTGAATATCATATTGAAAGCTGCACCCCTTTGATATTACCCTTAGATATGGGTATCTCCACTTCGTACAAAGTTCATCCAGTTAGAAGGTGTAAATGCATGGAATGGGGTAATGCAAGCTACTAAAATAACCAGTTTCTAGCCGCGATATCTGGGTACGCTCTGGAAAGCCACAGTAGGATGCCCTTAATGTTATTAGTGGTATATAGACCAACTTAATCAAGGTGAGGGTATACAAAATTGAGTTCTTTATATATATATATATATATTGTTGCTTAGAATATTGCACATCGGACAGATTTTTTGATGTTATCCTCCGTCGGAAGACGACGTGTCAAAGTAAAAATTAAGTTACCCATAATTCCTTGCCTCGAAGTTAAATAGGCCGTGATACATTATTTGTCATCTGAAATGTTGTCTTCAGATGTTATAAATGATAACGCAATACAGGTATTTTGCAAGCACTTATGCAGGTGGACTAGGAAATTCTTTTATCTAGAAAAGTTACTCCATTTTAGGCCTGGGTTAGGTCTTCTCTGATGTTTAGACTAGGGAAAAATACATGAAATTCAGGTATACTTTGTAAATATTTCCTGGCTACGTATTCGAACCATGAATATGTCATGGATATATTAGACAATAGTGATACTTCTGAGGTCTTTGTGTGTGTGTGTGTAAACAGGTTAACTTACACTAGATTTTTGGGTGTAATCTATAAATTTCTAGGTAACAACTGTTTATCATCAAATAATTGGGAAAAGAGTTCTGGAGAAAACAAAAATATGGATAGTTGGAGTCAAGTTGAAGGAAAGTTTCATATTCAATACAGTGGCCTTTCAATCTGTCGTTACCACCAGAAATGAGAGTGTCCTTTTAAATCTTTGAATAATTTCTGGTCAGGTGGTTATAAGGTAGGATGTAAATGATATAGGAGCTATACAAAATGTATATAATCAATTTAGTTTTATAAAAAAAGTGTGGGTACATGCTTAAGTCCTGAAACTGTGTGCAATGATGGCAATGTTTCGCATAACAGTGCTTTATGCTAGTATCAAGGTGCGAAGGTGTGTGCTTGTTGAAACCATGACTTTTGAGGGAACATAAGCAATAAATCTCTTGCAAGGTGATGTATTTTTACGTTAACAGAAATGTTATATTAATTCCTAATCAATGGATAAATATGTTAGTCATCTGAAATTCAAAATTACTAATTATTATAGCATAAAAGCTAATCCCTGACCAAGAAATCTGCAACCGTATTCTTTTATTTGACTCAGAATCTTAGTATGGATTTGGACTCGGTTGTCACGGTTTTCATTTCATATATTTCACTTCTTTTAGTTCCTTTGTTCACATGATAATGGTTTGTCTTTATACTTCTCTTGCAGAATGTGTGTTAAGTATAGCACGTGCTTCAATTACTTCTTTGGTGTAGAAGTCCAGCTGATCTTGTCATTTTTCCACACTTTTCACCTTTGAACAACATTAGTGCCCTCTCTCTAAGTTAGTAGTATAGATGTTCATAGCTAGGTGGTTCCAAATTCATAGTTTTTTTAGGTTGTAATCCAACTTTTAAAGGAAGACATCCATAGAAGTTGTAGGATGTTGTATTATTTTTTAAATGATAAAATCATATCTTCACCAACTTCTTGTTTGCATTTAAAGAAGAAGAAAAGAAGCATACTTCGGAAAAGGGCCTAAAATACCCTTGAAGTATTGAAAATGGTACAAAATTATCCTTCATCCACCTATTGGCTCCAAAATGCCCTTTTCATCCACCTATTGGGTCCAAAATACCCTTGTCATCCACCTTTGGGTTTAAAATTGACCACTTCTTTGATAATTTTAAAATTAAATTCTTTAAAAACTTTTTAAAATACTTGCCGTTCACTTTTGGTTATAATTTAATTTATTAATATAATTTATAAATCAACCCACTCATTACTAACTAAACCCCACCCAAGTAATAATCCAACTATAATATAAAAATCTTCATAAACACTACTAAAGCACAATGAAATTATATATTCCTGAAAATGACATCTAAAATTATTCGAGTCCGAATCGAAGCTTCAATTAAATTTAGATTGAACTGCTTATTTAGGAGGACACTTTCAATATGATTGATTGAATTTAGAAATTTATGATTAAAGGTAAAGAAGTAATACATCCCGAATTAATTCACGCCCTTTTTCAAAAATATAATTTTATAAATACTTATGATTTGTTTTAAAACCTTTAATATATTATTTTGAAAAAAAGTTGCCTATGAAGTAACATCACATAATTGAAACGTAAGAATAATTAAGATGAACATAGTCTGACTTTCAAGTTTATCGATAATTTTATTTAGACACTTGAATGTATGATAATTTACTTCTGAGATATTTTTGCCTCAAATTTTTAAAAACACTCAATTGACAGTAGATTTTCTTTTATTGCATTAATAATGTGACGGGTTTATTAATTTGGAGGGGTTTAATTAGTTTTGGGTTGATAGTGGATTTATTTATAAATTATACTAATAAATTAAATTATAACAAATAGTTGAGTGCCACATATTTTAAAAAATATTTAAATAGTTTAAACATAAAACCGTTAAATAAGTGGTCAATTTTGAACCAATAGGTGGATAACAAGGGTATTTTGGATCCAATAGGTGGGTGGAAAGGGTATTTTGGAGCCAATAGGTGGATGGAGGGTAATTTTGTACCATTTCTAATACTTTGAGGGTATTTTAGGCCCTTTTCCGTTTTTTATTGTTAAGAAAAAGGCAGCATACTTGTACAAGGAAGTCGCATCATATTCATAAAAGTATATGTAATCTGAGTTTTGAAAGAACATATTCATGCCTGTAGAAGACATTTTCAAAGGAACATTGGTGGGAGCCTTGAAACAATTCACAGCAGGAGCTTTCCATAGTGGTTAATTATTTTATGTTAGATATTGTTGCTTGCTGCTGTGAGTTACTCTAGCCTGAAGTTAAGAACCCAAAAGAACTGGGAGTAGAATAACTTTGTCAACTTAAATTATTTAAATAGATGTTGACTGAAGAAGCAAAAGAGATGAACATTATCTAATTTTTCTTTACCATGTGGGTATAGTTTTTCTTTTTGGCTACGAGAGTAGCTATGGCGATTGTTTTAGGATAAGTGATTACCTATTTTGAGATAATTCAAAGACAATTTTCTGCTGCTAGATAGTTCCTTGCAGTTTGTTGGTGCTGCACAGTGTAATTGAAGTTAGATTAAAGTTTAATCATATCATCTTTGTTCTTGAGCTTCATTATAATCTGCCTTGACAGTGGAAAGGATGCTGAAGATAGACACTCCTTGGACATTTACTTGAGCATGTTGCAGTAACATGTTTTTGTTATAGTTTATTTGTGATAATGATTAATTAATCTGATAGTACATAGATGTTGCAGAACTTATTCTTAAGGTGATTGATGATTACAAATTTCATCCTGTAAATCTTTCTTGACTATTCTTTTAAACGTGCCTCTTGCAAAAATTATCTGGCTGAAACTGCTGACTGACGGTTGGAATTGGACTTCTCAGGCAATACGAACTGGTTGGGTTCATCCAAATATTAATCTTGAAAACCCAGATGAAGGCGTGGTAAGGATCTATATTGTGTGCATTGTCAACAAATTCTTGTTCATTTAAGCATGGAATATCATCATACATAAAGAATTTTATCACAAGAAACTGCTAAGAAAGTTTGCTGTATCAAGAGCATGCAGTTGGTTACACTTAATGGCTTGACCAGCTAGTTAAGTCTAACTTAGCAGCTTCTCTGAATTTTTTACTATATCGCCAAAAGCTGGTTTACAGTGGAGCCTTTTATGGCAATGAAACTACGAGTATGACTCACAAGTCTATTAGTTTGATTCACATTGTCTGCATTAGTAGGGCTTTGCTCTGATATGGCAACCAAGACAGATTCTTTTGTGACATGAATATACAAACCATTTGATATATCATGTCTCCCCTGTTTTACTATTTCAGCTTTACTTTTTATTGACCTGGTAATCACCGCATCTGATGATATGTAATATCAATGAAACAGGATACAAATATACTTGTTGGTCCCATAAAGGAACGACTGGATATTAAGGTGGCATTATCTAATTCATTTGGATTTGGTGGCCACAACTCATCAATCTTATTTGCTCCTTACAAGTAGATCTCTCAAACAATGTTGATGCATCTGACAGATACAAGGTATGTAGGTTCATGCTTGTTTGTATTGAGGAAGCGAGGAAGATTAAGAAAGCCATGTATTTTGGAGTGTACACTTAGCAAATCTAGTTAGTTGTTTGGTAGGGAACAAAATGGGAGAAGAAGGATCACTGTTTTAACATGTAACAACCTAGTTAGTTTGTTTCGGCAAAATAGAACTTCATTTCTTCTAGACTATGGGACCTGCTTCCTACTAAACCCCATATGCAGCAGTGATCAAAGTAAATTTGAGAATCTTGAGTCTGGAATATGACTATCTTATTCTTCGATTTTATTATTCGTTGTCTTTTTTGCTACAATTATCGTATGATTTGTTGTTGTTACTTTTCTCGTCTATGTTATTTTGATCGTGGCTTCTTCACTACTGCATTCCTTTTCAAAACTGCTTTCATATGCTTTAGTTTACTTGAGCCGAGGGTTTGTCGGAAACAACCTCTCGACGGTCTGCATACACACCACCCTACCCAGAACCCACTTGTGGGATTACATCGGGTATTGTTGCTGTCAAGTCTGGAAAAAGAGTGTGGTCGGAGACTATACTTTCTAGGCTATGCCAAGCTCTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATTGTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGCATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGTTGACTGGTCTGATATTCGTGAGCAAAAACGACTTATGGTATTGCGAGCTTCAGTCGCACTACACGGTCGTTCTGTTACTCTTTATGAGAAAGCGTTCCCGCTTTCAGAGCAATGTTCAAAGAAAGCTCATGACCAATTTCTAGCCGACCTTGCGAGCATTCTACCGAGTAACACCACACCGCTCATTGTCAGTGATGCTGGCTTTAAAGTGCCATGGTATAAATCCGTTGAGAAGCTGGGTTGGTACTGGTTAAGTCGAGTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGGTTCTAGCAACTAACTTACCTGTTGAAATTCGAACACCCAAACAACTTGTTAATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAGCTCAAAATTTATTCACACATGGTTACGCTTTGGGGAAATTATGAGGGGATCTCTCAGTGCCAAGCTTGCTACTACTTGAACAAGTGGATTCAATATTTTGGTACATGAACACCTATTTGGCAAAAAGAGAAGTGTTAGCAATGACTAAAGGTTATATCAAACTGTTTGGTAAACAGATTACCTTTTTACGATAAAAGGGAATCACCTGAGCTTGGCAATTTAGCGAGAGTTGATAGCTTTTCTATTTCAAAATGTTGCTAGCTCCTTGTAGCATTGATTCACATCTGTAATGGAAACCAAATGAAACAAGCCTCCTTTCCCCCCACTTCTTTTTCTCTTACAGTTACTCCCTTTATATTCATTGAACATATGTTTTCATTTGCTTTATTTTAGGAATATTTGGAAGGATCCTTGATTCCCAGAGTTACTTGAAGGACACTCGTAGAAGAGGCCTCAGTCTCGAAGAATTTGTCTTCAGGAAGATAGTCTAATGACGGTGGTACTTCCCTCTGATATACAGAATTTGATTGTTGGAGAAAGAAGATGCCGAAGCAAAGAATGGGGGGAGGATCAAGTTTTTTTTATCTCCATTTCTCTTAGCTAAATTATACTTACTTAACTAAATTGTTTCTCTTACACATAGCAGCAAATGACCCTTAGGTGTTTGCATATGGGCCTTAATGCTAGTGTACTAGTTTCTTTGTATACCATATATATTCTGCAAATTGGACTTCTTGATATTTGAATGAACAAACTCTGAAGGACTTCCTCAAAACGAAAAAAATAAG</genome_strand>
        <mrna_strand>GTTTCCTATAGGAAGATGAATCCTTTTTGTGTCCCATTTGCAACTACAAACATGGGTTCTGCCATGCTTGCCATGGACCTG............................................................................................GGATGGATGGGTCCAAATTATTCAATTTCAACAGCATGTGCAACAAGCAACTTCTGCATATTGAATGCCGCTAACCACATCATTAGAGGTGAAGCT..............................................................................................................................................................GACATGATGCTGTGTGGTGGATCAGATGCAGCAATTATACCAATTG..........................................................................................................GATTGGGAGGATTTGTTGCTTGCAGAGCACTTTCACAGAGAAATACCGACCCTTCAAGAGCTTCTCGGCCTTGGGATAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCGATGGATTTGTCATGGGTGAAGGAGCTGGTGTCCTGCTTCTGGAAGAACTTGAGCATGCCAAG.........................................................................................................................................CAAAGAGGTGCAACAATCTATGCTGAATTTCTAGGTGGAAGTTTTACTTGTGATGCTTATCACATGACTGAGCCTCATCCTAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGGAGTCATCCTATGTGTAGAGAAGGCATTAGCTCAGTCAGGGGTATCCAAGGAAGATGTGAACTACATTAATGCGCATGCAACATCCACACCAGCAGGAGATCTTAAGGAGTATCAAGCTCTTGTTCATTGTTTTGGCCAAAATCCAGAG.................................................................................................TTGCGAGTTAACTCCACAAAATCTATGGTTGGTCACCTGCTTGGAGCTGCTGGTGCTGTTGAGGCTGTGGCAACTATCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATACGAACTGGTTGGGTTCATCCAAATATTAATCTTGAAAACCCAGATGAAGGCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAAATATACTTGTTGGTCCCATAAAGGAACGACTGGATATTAAGGTGGCATTATCTAATTCATTTGGATTTGGTGGCCACAACTCATCAATCTTATTTGCTCCTTACAAGTAGATCTCTCAAACAATGTTGATGCATCTGACAGATACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATTTGGAAGGATCCTTGATTCCCAGAGTTACTTGAAGGACACTCGTAGAAGAGGCCTCAGTCTCGAAGAATTTGTTTTCAGGAAGATAGTCTAATGACGGGGGTACTTCCCTCTGATATACAGAATTTGATTGTTGGAGAAAGAAGATGCCGAAGCAAAGAATGGGGGGAGGATCAAGTTTTTTTTATCTCCATTTCTTTTAGCTAAATTATACTTACTTAACTAAATTGTTTCTCTTACACATAGCAGCAAATGACCCTTAGGTGTTTGCATATGGGCCTTAATGCTAGTGTACTAGTTTCTTTGTATACCATATATATTTTGCAAATTGGACTTCTTGATATTTGAATGAAAAAACTCTGAAGGACTTCCTCAAAA-AAAAACCCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329060" ref_strand="+" ref_description="SGN-U329060        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>gcacgagggaagtcgcatcatattcataaaagtatatgtaatctgagttttgaaagaacatattcatgcctgtagaagacattttcaaaggaacattggtgggagccttgaaacaattcacagcaggagctttccatagtggttaattattttatgttagatattgttgcttgctgctgtgagttactctagcctgaagttaagaacccaaaagaactgggagtagaataactttgtcaacttaaattatttaaatagatgttgactgaagaagcaaaagagatgaacattatctaatttttctttaccatgtgggtatagtttttctttttggctacgagagtagctatggcgattgttttaggataagtgattacctattttgagataattcaaagacaattttctgctgctagatagttccttgcagtttgttggtgctgcacagtgtaattgaagttagattaaagtttaatcatatcatctttgttcttgagcttcattataatctgccttgacagtggaaaggatgctgaatatagacactccttggacatttacttgagcatgttgcagtaacatgtttttgttatagtttatttgtgataatgattaattaatctgatagtacatagatgttgcaaaacttattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0025K09.1" temp_strand="+" temp_description="C07HBa0025K09.1  AC212608.1 htgs_phase:1 submitted_to_sgn_as:gi|158262104|gb|AC212608.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="60829" stop="62081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61129" g_stop="61781" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.1" gen_strand="+" ref_id="SGN-U329060" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61129" e_stop="61781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACAAGG-AAGTCGCATCATATTCATAAAAGTATATGTAATCTGAGTTTTGAAAGAACATATTCATGCCTGTAGAAGACATTTTCAAAGGAACATTGGTGGGAGCCTTGAAACAATTCACAGCAGGAGCTTTCCATAGTGGTTAATTATTTTATGTTAGATATTGTTGCTTGCTGCTGTGAGTTACTCTAGCCTGAAGTTAAGAACCCAAAAGAACTGGGAGTAGAATAACTTTGTCAACTTAAATTATTTAAATAGATGTTGACTGAAGAAGCAAAAGAGATGAACATTATCTAATTTTTCTTTACCATGTGGGTATAGTTTTTCTTTTTGGCTACGAGAGTAGCTATGGCGATTGTTTTAGGATAAGTGATTACCTATTTTGAGATAATTCAAAGACAATTTTCTGCTGCTAGATAGTTCCTTGCAGTTTGTTGGTGCTGCACAGTGTAATTGAAGTTAGATTAAAGTTTAATCATATCATCTTTGTTCTTGAGCTTCATTATAATCTGCCTTGACAGTGGAAAGGATGCTGAAGATAGACACTCCTTGGACATTTACTTGAGCATGTTGCAGTAACATGTTTTTGTTATAGTTTATTTGTGATAATGATTAATTAATCTGATAGTACATAGATGTTGCAGAACTTATTCT</genome_strand>
        <mrna_strand>GCACGAGGGAAGTCGCATCATATTCATAAAAGTATATGTAATCTGAGTTTTGAAAGAACATATTCATGCCTGTAGAAGACATTTTCAAAGGAACATTGGTGGGAGCCTTGAAACAATTCACAGCAGGAGCTTTCCATAGTGGTTAATTATTTTATGTTAGATATTGTTGCTTGCTGCTGTGAGTTACTCTAGCCTGAAGTTAAGAACCCAAAAGAACTGGGAGTAGAATAACTTTGTCAACTTAAATTATTTAAATAGATGTTGACTGAAGAAGCAAAAGAGATGAACATTATCTAATTTTTCTTTACCATGTGGGTATAGTTTTTCTTTTTGGCTACGAGAGTAGCTATGGCGATTGTTTTAGGATAAGTGATTACCTATTTTGAGATAATTCAAAGACAATTTTCTGCTGCTAGATAGTTCCTTGCAGTTTGTTGGTGCTGCACAGTGTAATTGAAGTTAGATTAAAGTTTAATCATATCATCTTTGTTCTTGAGCTTCATTATAATCTGCCTTGACAGTGGAAAGGATGCTGAATATAGACACTCCTTGGACATTTACTTGAGCATGTTGCAGTAACATGTTTTTGTTATAGTTTATTTGTGATAATGATTAATTAATCTGATAGTACATAGATGTTGCAAAACTTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339612" ref_strand="+" ref_description="SGN-U339612        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: Integrase,(evalue: 9e-34, score=146)">
      <seq>ttttctaatttggttatgaaaatggcatatgtcaacacaaaattaattgagggctctggaagagcgaccttattactacctggagggacaatattaagcattgataatgcattatattgtagtaagtctcaaagaaacttattaagtttcaaagttattcgccaaaatggctatcatgttgagacggctaatgaaggaaaggttgaatacctttacattactacaattaatgttgagaagaaaattgtgcatgaaaaattacctgcattttcttctgggttgtactatacaagtataagtacagttgaatcacatgccgtagtaaacaaaaggtttactaattttaatgattttatcatttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0025K09.1" temp_strand="+" temp_description="C07HBa0025K09.1  AC212608.1 htgs_phase:1 submitted_to_sgn_as:gi|158262104|gb|AC212608.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="87674" stop="88655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87987" g_stop="88355" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.1" gen_strand="+" ref_id="SGN-U339612" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87987" e_stop="88355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGTTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGACTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTTTGGGTTGTACTATACAAGTATAATTACAGTTGAATCACATGCCATAGTAAACAAAAGGTTTAGTAATTTTAATGATTTTATCATTTGGCATG</genome_strand>
        <mrna_strand>TTTTCTAATTTGGTTATGAAAATGGCATAT--GTCAACACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340801" ref_strand="+" ref_description="SGN-U340801        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|4567266|gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana] (evalue: 7e-11, score=47.4)">
      <seq>aattctgctttgcttcttgcccaattcctcaagataatctgccatccatatcatctctttcccagcttcagctattgccacaaactcagctttagtggatgaaagagaaacatacttctaaagacacggacatccaacttactgcttttccacctatggtgtaaatgtacccggacgtactcttgctcgagtcaacatccccaccaagatcagcatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0025K09-0qSK0/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0025K09.1" temp_strand="+" temp_description="C07HBa0025K09.1  AC212608.1 htgs_phase:1 submitted_to_sgn_as:gi|158262104|gb|AC212608.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0025K09, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="117312" stop="118127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117610" g_stop="117827" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0025K09.1" gen_strand="+" ref_id="SGN-U340801" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>218</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0025K09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117610" e_stop="117827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCGCTCTGCTTCTTGCCCAATTCCTCAAGATAATCTGTCAGCCATATCATCTCTTTCCCAACTTCAGCTATTGCCACATACTCAGCTTCAGTAGATGAAAGAGAAACACACTTCTGAAG-CCTGGACATCCAACTCACTGTTGTTCCACCTATGGTGTAAATGTACCCGGATGTACTCTTGCTCGATTCAACATCCCCACCAAGATCAGCATCC</genome_strand>
        <mrna_strand>AATTCT-GCTTTGCTTCTTGCCCAATTCCTCAAGATAATCTGCCATCCATATCATCTCTTTCCCAGCTTCAGCTATTGCCACAAACTCAGCTTTAGTGGATGAAAGAGAAACATACTTCTAAAGACACGGACATCCAACTTACTGCTTTTCCACCTATGGTGTAAATGTACCCGGACGTACTCTTGCTCGAGTCAACATCCCCACCAAGATCAGCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>12</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="14357" PGL_stop="16122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14357" e_stop="14374"/>
            <exon e_start="14456" e_stop="14696"/>
            <exon e_start="15468" e_stop="15646"/>
            <exon e_start="15734" e_stop="16122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.672" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14357" e_stop="14374" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.672">
            <gDNA_intron_boundary i_start="14375" i_stop="14455" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14456" e_stop="14696" e_length="241"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.954">
            <gDNA_intron_boundary i_start="14697" i_stop="15467" i_length="771"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15468" e_stop="15646" e_length="179"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="15647" i_stop="15733" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15734" e_stop="16122" e_length="389"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14357" stop="14374"/>
              <exon start="14456" stop="14696"/>
              <exon start="15468" stop="15646"/>
              <exon start="15734" stop="16122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATCTCAAACTCTACAG : TGGTATGCATTTGATTTTGTGGTGATGTGCACTGGTAAATATGGAGATATCCCAAATATACCAAATTTTCCACCAAAAAAAGGGCCAAAAGAGTTTAATGGTCAAGTTCTTCATACCCTTGATTACTCTAAACTTGACCAAGAAGCATCTACTAAACTTATGAAAGGGAAGAAAGTTGTTGTTGTTGGCTATAAAAAATCAGCTATTGATCTTGCAGTGGAATGTGCTGAAGCTAATCAAG : GACCTGAAGGGCAACCCTGTACAATGGTTGTAAGGACTTTGCATTGGACAGTTCCACATTACTCTATTTGGGGTTTACCATTCTACTTGTTCTATTCAACTAGATCTTCTCAGTTTCTCCATGAAAGACCCAATCAAGGATTGTTTAGGACCCTTCTTTGCCACATGCTTTCTCCCATG : AGAAAAGCAGCTTCTAAGTTAATCGAGTCGTATTTGGAATGGAAACTTCCACTAGAGAAGTATGGACTGAAACCAGAACACCCTTTTGAGGAAGATTATGCATCATGTCAGATGGCTATCTTGCCTGAGAATTTCTTCACTGAGGCGGATAAGGGAAAAATCATGTTCAAAAGAACATCCAAGTGGTGGTTCTGGGAAGGAGGCGTTGAATTCGAGGACAACACCAAGTTGGAAGCTGATGTTGTCATACTTGCAACTGGTTTTGATGGGAAGAAAAAGATTAAAGCTATATTACCTGATCCCTTTCGCAGTCTGGTAGAGTTCCCCTCAGGCATGATACCCTTGTACAGGGGTACAATCCACCCGTTGATACCAAATATGGCTTTCGT</gDNA_template>
            <first_frame> Q  S  Q  T  L  Q  :  W  Y  A  F  D  F  V  V  M  C  T  G  K  Y  G  D  I  P  N  I  P  N  F  P  P  K  K  G  P  K  E  F  N  G  Q  V  L  H  T  L  D  Y  S  K  L  D  Q  E  A  S  T  K  L  M  K  G  K  K  V  V  V  V  G  Y  K  K  S  A  I  D  L  A  V  E  C  A  E  A  N  Q   : G  P  E  G  Q  P  C  T  M  V  V  R  T  L  H  W  T  V  P  H  Y  S  I  W  G  L  P  F  Y  L  F  Y  S  T  R  S  S  Q  F  L  H  E  R  P  N  Q  G  L  F  R  T  L  L  C  H  M  L  S  P  M  :  R  K  A  A  S  K  L  I  E  S  Y  L  E  W  K  L  P  L  E  K  Y  G  L  K  P  E  H  P  F  E  E  D  Y  A  S  C  Q  M  A  I  L  P  E  N  F  F  T  E  A  D  K  G  K  I  M  F  K  R  T  S  K  W  W  F  W  E  G  G  V  E  F  E  D  N  T  K  L  E  A  D  V  V  I  L  A  T  G  F  D  G  K  K  K  I  K  A  I  L  P  D  P  F  R  S  L  V  E  F  P  S  G  M  I  P  L  Y  R  G  T  I  H  P  L  I  P  N  M  A  F   </first_frame>
            <second_frame>  N  L  K  L  Y  S :   G  M  H  L  I  L  W  *  C  A  L  V  N  M  E  I  S  Q  I  Y  Q  I  F  H  Q  K  K  G  Q  K  S  L  M  V  K  F  F  I  P  L  I  T  L  N  L  T  K  K  H  L  L  N  L  *  K  G  R  K  L  L  L  L  A  I  K  N  Q  L  L  I  L  Q  W  N  V  L  K  L  I  K  :  D  L  K  G  N  P  V  Q  W  L  *  G  L  C  I  G  Q  F  H  I  T  L  F  G  V  Y  H  S  T  C  S  I  Q  L  D  L  L  S  F  S  M  K  D  P  I  K  D  C  L  G  P  F  F  A  T  C  F  L  P  * :   E  K  Q  L  L  S  *  S  S  R  I  W  N  G  N  F  H  *  R  S  M  D  *  N  Q  N  T  L  L  R  K  I  M  H  H  V  R  W  L  S  C  L  R  I  S  S  L  R  R  I  R  E  K  S  C  S  K  E  H  P  S  G  G  S  G  K  E  A  L  N  S  R  T  T  P  S  W  K  L  M  L  S  Y  L  Q  L  V  L  M  G  R  K  R  L  K  L  Y  Y  L  I  P  F  A  V  W  *  S  S  P  Q  A  *  Y  P  C  T  G  V  Q  S  T  R  *  Y  Q  I  W  L  S  </second_frame>
            <third_frame>   I  S  N  S  T   : V  V  C  I  *  F  C  G  D  V  H  W  *  I  W  R  Y  P  K  Y  T  K  F  S  T  K  K  R  A  K  R  V  *  W  S  S  S  S  Y  P  *  L  L  *  T  *  P  R  S  I  Y  *  T  Y  E  R  E  E  S  C  C  C  W  L  *  K  I  S  Y  *  S  C  S  G  M  C  *  S  *  S  R :   T  *  R  A  T  L  Y  N  G  C  K  D  F  A  L  D  S  S  T  L  L  Y  L  G  F  T  I  L  L  V  L  F  N  *  I  F  S  V  S  P  *  K  T  Q  S  R  I  V  *  D  P  S  L  P  H  A  F  S  H   : E  K  S  S  F  *  V  N  R  V  V  F  G  M  E  T  S  T  R  E  V  W  T  E  T  R  T  P  F  *  G  R  L  C  I  M  S  D  G  Y  L  A  *  E  F  L  H  *  G  G  *  G  K  N  H  V  Q  K  N  I  Q  V  V  V  L  G  R  R  R  *  I  R  G  Q  H  Q  V  G  S  *  C  C  H  T  C  N  W  F  *  W  E  E  K  D  *  S  Y  I  T  *  S  L  S  Q  S  G  R  V  P  L  R  H  D  T  L  V  Q  G  Y  N  P  P  V  D  T  K  Y  G  F  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14357" stop="14374"/>
                    <exon start="14456" stop="14696"/>
                    <exon start="15468" stop="15646"/>
                    <exon start="15734" stop="16120"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSQTLQWYAFDFVVMCTGKYGDIPNIPNFPPKKGPKEFNGQVLHTLDYSKLDQEASTKLMKGKKVVVVGYKKSAIDLAVECAEANQGPEGQPCTMVVRTLHWTVPHYSIWGLPFYLFYSTRSSQFLHERPNQGLFRTLLCHMLSPMRKAASKLIESYLEWKLPLEKYGLKPEHPFEEDYASCQMAILPENFFTEADKGKIMFKRTSKWWFWEGGVEFEDNTKLEADVVILATGFDGKKKIKAILPDPFRSLVEFPSGMIPLYRGTIHPLIPNMAF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="19244" PGL_stop="16172"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19244" e_stop="18982"/>
            <exon e_start="18910" e_stop="18773"/>
            <exon e_start="18072" e_stop="17983"/>
            <exon e_start="17214" e_stop="16172"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19244" e_stop="18982" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18981" i_stop="18911" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18910" e_stop="18773" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.964">
            <gDNA_intron_boundary i_start="18772" i_stop="18073" i_length="700"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18072" e_stop="17983" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="17982" i_stop="17215" i_length="768"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17214" e_stop="16172" e_length="1043"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19244" stop="18982"/>
              <exon start="18910" stop="18773"/>
              <exon start="18072" stop="17983"/>
              <exon start="17214" stop="16172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314061" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGACCAACAATCTGCTAATAATACAAATTTCACTATCATCATCACATAGTAGAAAGAGAGAAAAAAATGGCTTCTCTATCGGTCTCTGTAAAACACACTCTTCCTTCTCTGCTCCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTGTCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCACCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAG : GTGAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAAAAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGTGGTGGTTTATTTCTACCCTGCTGATGAAACTCCTGGTTGCACCAAACAG : GCATGTGCCTTCAGGGACTCTTATGAAAAATTCAAGAAAGCAGGGGCTCAAGTTGTTGGAATTAGTGGTGATGATATTGAATCCCACAAG : GCCTTTGCAAAGAAGTACAGGCTCCCATTTACCTTGTTGTGTGATGAAGGCAACAAAGTTAGGAAAGAGTGGGGAATCCCGGGAGACCTTTTTGGTACATTGCCTGGTAGACAGACTTATGTGCTTGACAAGAATGGAGTGGTTCAACTCATATATAATAATCAGTTCCAACCTGAAAAGCATATTGATGAGACATTGAAGTTACTTCAAAGTCTTTAAACGTCAAGGTTTCCCCTTCTACATTCTTTTCCTGCCTCTAGCCAATAAAGTTCTTGTACTTTTTCTGCCACTAATGTGTGCCAATTGTATGTTATCTGATAGGCTGTACAACGACTTATATTTCATAGATGCCAAAGGAGCTGTTAGTTTAAAGTCATTCTACAATTTATGTTGTAGAATGTTGAACTCGGTCTCCCGCGAGAGATAAATTTGTATATGGGCCTTTGCTATGGTTGTAGTAACTGCATAATGGAGAATTTTCTTCAATTGGCACTTCTTACAGTTGTTGAAACCCCAACAGTGGTGGATCATATAGTAAATTGTAAATGAGAATGGAGTCACTTGTGATGATCTTGAAATATTAATCTTTATTCATTACTTTTACTGATAAAAATAGAAGTTCTAAGTCATAAGCTGAGGTATTTAACATTTGTGGATACCTTGCTTGACCTTTCATACATGTATGTTTATTCCTTAAAATGAGTAGATAAATATACTGTATAAGCACTAGGTATAGAAGAAATAATAAGTTAATTAAGTAGGAAAGTTTCAAATGTTATTGAGTGAAGCTACTTCTCCTCTGCATAATCTTGGCTGTTGTAGGGGCTAAAGGCTTCAGCCAACCAGTTCGTCTTCCTCCAAACTTGCCATCCCATCTCTTGGCAGATTTCATCGCTATGGTTAATACTGAAAGTGGAAATGCAATTTCTCTTGTAGAATCTTGTCGTCCTCTTCATAATCTCCATCTCTTGTGTTATCTGTTCAAGCATTTTCTCAACAGATGGAAGCTTAAACAGATCATCAACAAGTCGTGATAGCCATAT</gDNA_template>
            <first_frame> Q  D  Q  Q  S  A  N  N  T  N  F  T  I  I  I  T  *  *  K  E  R  K  K  W  L  L  Y  R  S  L  *  N  T  L  F  L  L  C  S  N  M  L  K  P  Q  K  N  P  S  P  K  T  L  P  L  S  P  D  H  H  N  P  I  F  M  A  L  K  S  F  I  H  L  L  F  Q  P  H  L  L  Q  E  L  Q  L  L  L  R :   *  I  K  V  Q  R  L  H  H  S  H  *  K  I  K  M  E  K  M  *  V  S  P  S  L  K  E  S  L  W  W  F  I  S  T  L  L  M  K  L  L  V  A  P  N  R :   H  V  P  S  G  T  L  M  K  N  S  R  K  Q  G  L  K  L  L  E  L  V  V  M  I  L  N  P  T  R :   P  L  Q  R  S  T  G  S  H  L  P  C  C  V  M  K  A  T  K  L  G  K  S  G  E  S  R  E  T  F  L  V  H  C  L  V  D  R  L  M  C  L  T  R  M  E  W  F  N  S  Y  I  I  I  S  S  N  L  K  S  I  L  M  R  H  *  S  Y  F  K  V  F  K  R  Q  G  F  P  F  Y  I  L  F  L  P  L  A  N  K  V  L  V  L  F  L  P  L  M  C  A  N  C  M  L  S  D  R  L  Y  N  D  L  Y  F  I  D  A  K  G  A  V  S  L  K  S  F  Y  N  L  C  C  R  M  L  N  S  V  S  R  E  R  *  I  C  I  W  A  F  A  M  V  V  V  T  A  *  W  R  I  F  F  N  W  H  F  L  Q  L  L  K  P  Q  Q  W  W  I  I  *  *  I  V  N  E  N  G  V  T  C  D  D  L  E  I  L  I  F  I  H  Y  F  Y  *  *  K  *  K  F  *  V  I  S  *  G  I  *  H  L  W  I  P  C  L  T  F  H  T  C  M  F  I  P  *  N  E  *  I  N  I  L  Y  K  H  *  V  *  K  K  *  *  V  N  *  V  G  K  F  Q  M  L  L  S  E  A  T  S  P  L  H  N  L  G  C  C  R  G  *  R  L  Q  P  T  S  S  S  S  S  K  L  A  I  P  S  L  G  R  F  H  R  Y  G  *  Y  *  K  W  K  C  N  F  S  C  R  I  L  S  S  S  S  *  S  P  S  L  V  L  S  V  Q  A  F  S  Q  Q  M  E  A  *  T  D  H  Q  Q  V  V  I  A  I  </first_frame>
            <second_frame>  K  T  N  N  L  L  I  I  Q  I  S  L  S  S  S  H  S  R  K  R  E  K  N  G  F  S  I  G  L  C  K  T  H  S  S  F  S  A  P  I  C  S  N  P  K  K  T  H  L  P  K  P  Y  H  C  L  Q  I  I  T  I  P  F  L  W  P  *  S  P  S  F  T  F  F  F  N  P  I  F  F  K  N  F  N  C  C  *   : G  E  *  R  F  S  A  S  T  I  H  I  E  R  S  R  W  K  K  C  E  S  L  Q  V  *  R  K  A  C  G  G  L  F  L  P  C  *  *  N  S  W  L  H  Q  T   : G  M  C  L  Q  G  L  L  *  K  I  Q  E  S  R  G  S  S  C  W  N  *  W  *  *  Y  *  I  P  Q   : G  L  C  K  E  V  Q  A  P  I  Y  L  V  V  *  *  R  Q  Q  S  *  E  R  V  G  N  P  G  R  P  F  W  Y  I  A  W  *  T  D  L  C  A  *  Q  E  W  S  G  S  T  H  I  *  *  S  V  P  T  *  K  A  Y  *  *  D  I  E  V  T  S  K  S  L  N  V  K  V  S  P  S  T  F  F  S  C  L  *  P  I  K  F  L  Y  F  F  C  H  *  C  V  P  I  V  C  Y  L  I  G  C  T  T  T  Y  I  S  *  M  P  K  E  L  L  V  *  S  H  S  T  I  Y  V  V  E  C  *  T  R  S  P  A  R  D  K  F  V  Y  G  P  L  L  W  L  *  *  L  H  N  G  E  F  S  S  I  G  T  S  Y  S  C  *  N  P  N  S  G  G  S  Y  S  K  L  *  M  R  M  E  S  L  V  M  I  L  K  Y  *  S  L  F  I  T  F  T  D  K  N  R  S  S  K  S  *  A  E  V  F  N  I  C  G  Y  L  A  *  P  F  I  H  V  C  L  F  L  K  M  S  R  *  I  Y  C  I  S  T  R  Y  R  R  N  N  K  L  I  K  *  E  S  F  K  C  Y  *  V  K  L  L  L  L  C  I  I  L  A  V  V  G  A  K  G  F  S  Q  P  V  R  L  P  P  N  L  P  S  H  L  L  A  D  F  I  A  M  V  N  T  E  S  G  N  A  I  S  L  V  E  S  C  R  P  L  H  N  L  H  L  L  C  Y  L  F  K  H  F  L  N  R  W  K  L  K  Q  I  I  N  K  S  *  *  P  Y </second_frame>
            <third_frame>   R  P  T  I  C  *  *  Y  K  F  H  Y  H  H  H  I  V  E  R  E  K  K  M  A  S  L  S  V  S  V  K  H  T  L  P  S  L  L  Q  Y  A  Q  T  P  K  K  P  I  S  Q  N  L  T  I  V  S  R  S  S  Q  S  H  F  Y  G  L  E  V  L  H  S  P  S  F  S  T  P  S  S  S  R  T  S  I  V  A  K  :  V  N  K  G  S  A  P  P  P  F  T  L  K  D  Q  D  G  K  N  V  S  L  S  K  F  K  G  K  P  V  V  V  Y  F  Y  P  A  D  E  T  P  G  C  T  K  Q  :  A  C  A  F  R  D  S  Y  E  K  F  K  K  A  G  A  Q  V  V  G  I  S  G  D  D  I  E  S  H  K  :  A  F  A  K  K  Y  R  L  P  F  T  L  L  C  D  E  G  N  K  V  R  K  E  W  G  I  P  G  D  L  F  G  T  L  P  G  R  Q  T  Y  V  L  D  K  N  G  V  V  Q  L  I  Y  N  N  Q  F  Q  P  E  K  H  I  D  E  T  L  K  L  L  Q  S  L  *  T  S  R  F  P  L  L  H  S  F  P  A  S  S  Q  *  S  S  C  T  F  S  A  T  N  V  C  Q  L  Y  V  I  *  *  A  V  Q  R  L  I  F  H  R  C  Q  R  S  C  *  F  K  V  I  L  Q  F  M  L  *  N  V  E  L  G  L  P  R  E  I  N  L  Y  M  G  L  C  Y  G  C  S  N  C  I  M  E  N  F  L  Q  L  A  L  L  T  V  V  E  T  P  T  V  V  D  H  I  V  N  C  K  *  E  W  S  H  L  *  *  S  *  N  I  N  L  Y  S  L  L  L  L  I  K  I  E  V  L  S  H  K  L  R  Y  L  T  F  V  D  T  L  L  D  L  S  Y  M  Y  V  Y  S  L  K  *  V  D  K  Y  T  V  *  A  L  G  I  E  E  I  I  S  *  L  S  R  K  V  S  N  V  I  E  *  S  Y  F  S  S  A  *  S  W  L  L  *  G  L  K  A  S  A  N  Q  F  V  F  L  Q  T  C  H  P  I  S  W  Q  I  S  S  L  W  L  I  L  K  V  E  M  Q  F  L  L  *  N  L  V  V  L  F  I  I  S  I  S  C  V  I  C  S  S  I  F  S  T  D  G  S  L  N  R  S  S  T  S  R  D  S  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19221" stop="18982"/>
                    <exon start="18910" stop="18773"/>
                    <exon start="18072" stop="17983"/>
                    <exon start="17214" stop="16996"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKFHYHHHIVEREKKMASLSVSVKHTLPSLLQYAQTPKKPISQNLTIVSRSSQSHFYGLEVLHSPSFSTPSSSRTSIVAKVNKGSAPPPFTLKDQDGKNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAQVVGISGDDIESHKAFAKKYRLPFTLLCDEGNKVRKEWGIPGDLFGTLPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKLLQSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16432" stop="16181"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKLLLLCIILAVVGAKGFSQPVRLPPNLPSHLLADFIAMVNTESGNAISLVESCRPLHNLHLLCYLFKHFLNRWKLKQIINKS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17015" stop="16788"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYFKVFKRQGFPFYILFLPLANKVLVLFLPLMCANCMLSDRLYNDLYFIDAKGAVSLKSFYNLCCRMLNSVSRER*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="29712" PGL_stop="24249"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29712" e_stop="29606"/>
            <exon e_start="29508" e_stop="29415"/>
            <exon e_start="29336" e_stop="29280"/>
            <exon e_start="28878" e_stop="28744"/>
            <exon e_start="28642" e_stop="28571"/>
            <exon e_start="27583" e_stop="27470"/>
            <exon e_start="27378" e_stop="27217"/>
            <exon e_start="27129" e_stop="27001"/>
            <exon e_start="26827" e_stop="26726"/>
            <exon e_start="26635" e_stop="26556"/>
            <exon e_start="25420" e_stop="25271"/>
            <exon e_start="25130" e_stop="24249"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.305" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.821" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.872" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29712" e_stop="29606" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.951">
            <gDNA_intron_boundary i_start="29605" i_stop="29509" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29508" e_stop="29415" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.928" acc_prob="0.305">
            <gDNA_intron_boundary i_start="29414" i_stop="29337" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29336" e_stop="29280" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="29279" i_stop="28879" i_length="401"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28878" e_stop="28744" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="28743" i_stop="28643" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28642" e_stop="28571" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.952">
            <gDNA_intron_boundary i_start="28570" i_stop="27584" i_length="987"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27583" e_stop="27470" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.935" acc_prob="0.973">
            <gDNA_intron_boundary i_start="27469" i_stop="27379" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="27378" e_stop="27217" e_length="162"/>
          </exon>
          <intron i_serial="7" don_prob="0.821" acc_prob="0.982">
            <gDNA_intron_boundary i_start="27216" i_stop="27130" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="27129" e_stop="27001" e_length="129"/>
          </exon>
          <intron i_serial="8" don_prob="0.976" acc_prob="0.976">
            <gDNA_intron_boundary i_start="27000" i_stop="26828" i_length="173"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="26827" e_stop="26726" e_length="102"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26725" i_stop="26636" i_length="90"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="26635" e_stop="26556" e_length="80"/>
          </exon>
          <intron i_serial="10" don_prob="0.978" acc_prob="0.980">
            <gDNA_intron_boundary i_start="26555" i_stop="25421" i_length="1135"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="25420" e_stop="25271" e_length="150"/>
          </exon>
          <intron i_serial="11" don_prob="0.872" acc_prob="0.998">
            <gDNA_intron_boundary i_start="25270" i_stop="25131" i_length="140"/>
          </intron>
          <exon e_serial="12" e_score="0.997">
            <gDNA_exon_boundary e_start="25130" e_stop="24249" e_length="882"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29712" stop="29606"/>
              <exon start="29508" stop="29415"/>
              <exon start="29336" stop="29280"/>
              <exon start="28878" stop="28744"/>
              <exon start="28642" stop="28571"/>
              <exon start="27583" stop="27470"/>
              <exon start="27378" stop="27217"/>
              <exon start="27129" stop="27001"/>
              <exon start="26827" stop="26726"/>
              <exon start="26635" stop="26556"/>
              <exon start="25420" stop="25271"/>
              <exon start="25130" stop="24389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24989" stop="24249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337548" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAGGCTTTTGGAGGTGACCCAAGAAGCTGGGGAGGCAGGGAAGGACAAAAAATCGCATTCAATGCAGATTGATGACTCATCCAGTAAAAGTTCTTTGTCAGAGAG : GGCACAGTTATTTGATCTGGCAGTTTCATTCTTGCCTGGTTTAAACGCTCAAGAAATTGGTGTGCTGTTTGGTGCTTTAAAGCCTGCTTTAAAG : GATGAGGAAGGCTTGATCCAGAAGAAGGCATATAAAGTTCTCTCCATGATCCTTCAG : GACTGTGATGAATTTATTTCCACGAAGACCGAAGAGTTGCTTAATTTGATGATTGAAGCACTACCTGCATGTCATTTTCCAGCCAAGCGTCACAGACTTGACTGCCTATACTTTTTGATTGTCCATGTTACGAAG : GATGAATCAGAACAGAGGAGGCGTGACAGTATTACTTCTTTTATGACTGAAATTTTGCTTGCACTCAAAGAG : GCTAACAAGAAAACAAGGAACCGAGCGTACGAGATTCTTGTCAAGATTGGCCATGCTTGTGCAGATGAAGACAAAGGTGGCAGAAAGGAGCACCTGCATCAGTTTTTTAATATG : ATTGCTGGGGGTCTTGCCGGGGAAACACCTCATATGATCAGTGCAGCGGTTAAAGGCCTTGCTCGACTGGCTTATGAATTTTCAGACCTTGTTTCTGCTGCTTACAGTGTCCTACCATCAACATTTCTTCTCCTTAAAAGAGAGAACAAAGAAATAATTAAG : GCTAATTTAGGGCTGTTGAAGGTACTGGTCACAAAATCGACGGCCGATGGATTGCAAGCACATTTAAGGAACATGGTAGAGGCCCTTCTTGGTTGGCAAAATAGTACCAAGAACCATTTCAAAGCCAAG : GTTAAACTGCTTATTGAAATGCTTATCAAGAAGTGTGGATTGGATGCTGTAAAAGAGGTGATGCCTGAAGAGCACATGAAACTCCTTACTAACATAAGAAAG : ATCAAAGAGCGAAGAGAGAGGAGCCTCGCCTCGAATTCTGAGGAAAGCAGATCCCGTATGACAAAAGCAACGACATCAAG : GCTAAGCAGATGGAATCATACAAAAATATTTTCTGAGTTTGATGATGGAGAATCTGAGAACAGTGATGCAGAATATATGGACACGAAAACTACTGCTGGTCGTAGGAGCAAGGCTACATTAGTATCAGACTCCAAAGCATCTTTATTACG : GTCCAAGAAAACACGGAAAGCAGCCAAGAGTTTGCAGGAAGATCTGTTTGATCAATTAGATGATGAGCCACTTGACTTACTTGACCAGAAGAAGACCAGGTCAGCTCTTAGAGCATCTGGCAATCTCAAGAGGAAGTCTGAATCAGAAGATGAAGCAGAAATAGATTCTGAAGGCCGTTTGATTATTCACGATGGAGATAAGAAGCAAAAAAGAGTTAAGCCAGCTTCTGATGATTTAGATGTAAGAAGCAAAGCAGGGAGTCGCTTTTCAGAGAGCTCAAGGAAGACTCAGAAACGGAGGAGAACATCTGAATCAGGATGGGCTTACACTGGAACAGAGTATGCGAGCAAGAAGGCAGGTGGTGATGTCAAGAAGAAAGACAGACTTGAGCCGTATGCCTACTGGCCCCTTGACCGCAAGATGATGAGCCGGAGGCCTGAACATCGGGCAGCAGCACGAAAAGGAATGTCAAGCATTGTGAAGCTAACAAAGAAGCTTGAAGGCAAGAGTGCATCATCTGTGCTGTCCGTGAAGAGATCTAAGACTAAAAAGAAAAATAGATCATAAATAGAGGATGAAGTCGAAGTCTGATTTGATGATACTACGTCATGAGGGAGAGCTCTGTCCAGAGGCTTGGTAGTTTTTGTGCCATAGTTTGTAGTTGGGGATTCTGGATATCCAGTACACCCATGTTTTCTTTCGTGTCCTTTTTCATTTAATTCATCCATATATATCACCTTCAACAGGTGATTTGTTTTTTTTGATAGGGTTGTATGTAGGAAATAGAGTGTACGTATGCAAATGCATTCAATACAAGCTACTTGAATTGGTGAGTTATTGGTAATATATAACATTATTGCAATATGCAATGACTTAAAAGT</gDNA_template>
            <first_frame> Q  R  L  L  E  V  T  Q  E  A  G  E  A  G  K  D  K  K  S  H  S  M  Q  I  D  D  S  S  S  K  S  S  L  S  E  R :   A  Q  L  F  D  L  A  V  S  F  L  P  G  L  N  A  Q  E  I  G  V  L  F  G  A  L  K  P  A  L  K  :  D  E  E  G  L  I  Q  K  K  A  Y  K  V  L  S  M  I  L  Q  :  D  C  D  E  F  I  S  T  K  T  E  E  L  L  N  L  M  I  E  A  L  P  A  C  H  F  P  A  K  R  H  R  L  D  C  L  Y  F  L  I  V  H  V  T  K  :  D  E  S  E  Q  R  R  R  D  S  I  T  S  F  M  T  E  I  L  L  A  L  K  E  :  A  N  K  K  T  R  N  R  A  Y  E  I  L  V  K  I  G  H  A  C  A  D  E  D  K  G  G  R  K  E  H  L  H  Q  F  F  N  M  :  I  A  G  G  L  A  G  E  T  P  H  M  I  S  A  A  V  K  G  L  A  R  L  A  Y  E  F  S  D  L  V  S  A  A  Y  S  V  L  P  S  T  F  L  L  L  K  R  E  N  K  E  I  I  K  :  A  N  L  G  L  L  K  V  L  V  T  K  S  T  A  D  G  L  Q  A  H  L  R  N  M  V  E  A  L  L  G  W  Q  N  S  T  K  N  H  F  K  A  K  :  V  K  L  L  I  E  M  L  I  K  K  C  G  L  D  A  V  K  E  V  M  P  E  E  H  M  K  L  L  T  N  I  R  K  :  I  K  E  R  R  E  R  S  L  A  S  N  S  E  E  S  R  S  R  M  T  K  A  T  T  S  R :   L  S  R  W  N  H  T  K  I  F  S  E  F  D  D  G  E  S  E  N  S  D  A  E  Y  M  D  T  K  T  T  A  G  R  R  S  K  A  T  L  V  S  D  S  K  A  S  L  L  R :   S  K  K  T  R  K  A  A  K  S  L  Q  E  D  L  F  D  Q  L  D  D  E  P  L  D  L  L  D  Q  K  K  T  R  S  A  L  R  A  S  G  N  L  K  R  K  S  E  S  E  D  E  A  E  I  D  S  E  G  R  L  I  I  H  D  G  D  K  K  Q  K  R  V  K  P  A  S  D  D  L  D  V  R  S  K  A  G  S  R  F  S  E  S  S  R  K  T  Q  K  R  R  R  T  S  E  S  G  W  A  Y  T  G  T  E  Y  A  S  K  K  A  G  G  D  V  K  K  K  D  R  L  E  P  Y  A  Y  W  P  L  D  R  K  M  M  S  R  R  P  E  H  R  A  A  A  R  K  G  M  S  S  I  V  K  L  T  K  K  L  E  G  K  S  A  S  S  V  L  S  V  K  R  S  K  T  K  K  K  N  R  S  *  I  E  D  E  V  E  V  *  F  D  D  T  T  S  *  G  R  A  L  S  R  G  L  V  V  F  V  P  *  F  V  V  G  D  S  G  Y  P  V  H  P  C  F  L  S  C  P  F  S  F  N  S  S  I  Y  I  T  F  N  R  *  F  V  F  F  D  R  V  V  C  R  K  *  S  V  R  M  Q  M  H  S  I  Q  A  T  *  I  G  E  L  L  V  I  Y  N  I  I  A  I  C  N  D  L  K   </first_frame>
            <second_frame>  R  G  F  W  R  *  P  K  K  L  G  R  Q  G  R  T  K  N  R  I  Q  C  R  L  M  T  H  P  V  K  V  L  C  Q  R   : G  H  S  Y  L  I  W  Q  F  H  S  C  L  V  *  T  L  K  K  L  V  C  C  L  V  L  *  S  L  L  *  R :   M  R  K  A  *  S  R  R  R  H  I  K  F  S  P  *  S  F  R :   T  V  M  N  L  F  P  R  R  P  K  S  C  L  I  *  *  L  K  H  Y  L  H  V  I  F  Q  P  S  V  T  D  L  T  A  Y  T  F  *  L  S  M  L  R  R :   M  N  Q  N  R  G  G  V  T  V  L  L  L  L  *  L  K  F  C  L  H  S  K  R :   L  T  R  K  Q  G  T  E  R  T  R  F  L  S  R  L  A  M  L  V  Q  M  K  T  K  V  A  E  R  S  T  C  I  S  F  L  I  * :   L  L  G  V  L  P  G  K  H  L  I  *  S  V  Q  R  L  K  A  L  L  D  W  L  M  N  F  Q  T  L  F  L  L  L  T  V  S  Y  H  Q  H  F  F  S  L  K  E  R  T  K  K  *  L  R :   L  I  *  G  C  *  R  Y  W  S  Q  N  R  R  P  M  D  C  K  H  I  *  G  T  W  *  R  P  F  L  V  G  K  I  V  P  R  T  I  S  K  P  R :   L  N  C  L  L  K  C  L  S  R  S  V  D  W  M  L  *  K  R  *  C  L  K  S  T  *  N  S  L  L  T  *  E  R :   S  K  S  E  E  R  G  A  S  P  R  I  L  R  K  A  D  P  V  *  Q  K  Q  R  H  Q   : G  *  A  D  G  I  I  Q  K  Y  F  L  S  L  M  M  E  N  L  R  T  V  M  Q  N  I  W  T  R  K  L  L  L  V  V  G  A  R  L  H  *  Y  Q  T  P  K  H  L  Y  Y   : G  P  R  K  H  G  K  Q  P  R  V  C  R  K  I  C  L  I  N  *  M  M  S  H  L  T  Y  L  T  R  R  R  P  G  Q  L  L  E  H  L  A  I  S  R  G  S  L  N  Q  K  M  K  Q  K  *  I  L  K  A  V  *  L  F  T  M  E  I  R  S  K  K  E  L  S  Q  L  L  M  I  *  M  *  E  A  K  Q  G  V  A  F  Q  R  A  Q  G  R  L  R  N  G  G  E  H  L  N  Q  D  G  L  T  L  E  Q  S  M  R  A  R  R  Q  V  V  M  S  R  R  K  T  D  L  S  R  M  P  T  G  P  L  T  A  R  *  *  A  G  G  L  N  I  G  Q  Q  H  E  K  E  C  Q  A  L  *  S  *  Q  R  S  L  K  A  R  V  H  H  L  C  C  P  *  R  D  L  R  L  K  R  K  I  D  H  K  *  R  M  K  S  K  S  D  L  M  I  L  R  H  E  G  E  L  C  P  E  A  W  *  F  L  C  H  S  L  *  L  G  I  L  D  I  Q  Y  T  H  V  F  F  R  V  L  F  H  L  I  H  P  Y  I  S  P  S  T  G  D  L  F  F  L  I  G  L  Y  V  G  N  R  V  Y  V  C  K  C  I  Q  Y  K  L  L  E  L  V  S  Y  W  *  Y  I  T  L  L  Q  Y  A  M  T  *  K  </second_frame>
            <third_frame>   E  A  F  G  G  D  P  R  S  W  G  G  R  E  G  Q  K  I  A  F  N  A  D  *  *  L  I  Q  *  K  F  F  V  R  E  :  G  T  V  I  *  S  G  S  F  I  L  A  W  F  K  R  S  R  N  W  C  A  V  W  C  F  K  A  C  F  K   : G  *  G  R  L  D  P  E  E  G  I  *  S  S  L  H  D  P  S   : G  L  *  *  I  Y  F  H  E  D  R  R  V  A  *  F  D  D  *  S  T  T  C  M  S  F  S  S  Q  A  S  Q  T  *  L  P  I  L  F  D  C  P  C  Y  E   : G  *  I  R  T  E  E  A  *  Q  Y  Y  F  F  Y  D  *  N  F  A  C  T  Q  R   : G  *  Q  E  N  K  E  P  S  V  R  D  S  C  Q  D  W  P  C  L  C  R  *  R  Q  R  W  Q  K  G  A  P  A  S  V  F  *  Y   : D  C  W  G  S  C  R  G  N  T  S  Y  D  Q  C  S  G  *  R  P  C  S  T  G  L  *  I  F  R  P  C  F  C  C  L  Q  C  P  T  I  N  I  S  S  P  *  K  R  E  Q  R  N  N  *   : G  *  F  R  A  V  E  G  T  G  H  K  I  D  G  R  W  I  A  S  T  F  K  E  H  G  R  G  P  S  W  L  A  K  *  Y  Q  E  P  F  Q  S  Q   : G  *  T  A  Y  *  N  A  Y  Q  E  V  W  I  G  C  C  K  R  G  D  A  *  R  A  H  E  T  P  Y  *  H  K  K   : D  Q  R  A  K  R  E  E  P  R  L  E  F  *  G  K  Q  I  P  Y  D  K  S  N  D  I  K  :  A  K  Q  M  E  S  Y  K  N  I  F  *  V  *  *  W  R  I  *  E  Q  *  C  R  I  Y  G  H  E  N  Y  C  W  S  *  E  Q  G  Y  I  S  I  R  L  Q  S  I  F  I  T  :  V  Q  E  N  T  E  S  S  Q  E  F  A  G  R  S  V  *  S  I  R  *  *  A  T  *  L  T  *  P  E  E  D  Q  V  S  S  *  S  I  W  Q  S  Q  E  E  V  *  I  R  R  *  S  R  N  R  F  *  R  P  F  D  Y  S  R  W  R  *  E  A  K  K  S  *  A  S  F  *  *  F  R  C  K  K  Q  S  R  E  S  L  F  R  E  L  K  E  D  S  E  T  E  E  N  I  *  I  R  M  G  L  H  W  N  R  V  C  E  Q  E  G  R  W  *  C  Q  E  E  R  Q  T  *  A  V  C  L  L  A  P  *  P  Q  D  D  E  P  E  A  *  T  S  G  S  S  T  K  R  N  V  K  H  C  E  A  N  K  E  A  *  R  Q  E  C  I  I  C  A  V  R  E  E  I  *  D  *  K  E  K  *  I  I  N  R  G  *  S  R  S  L  I  *  *  Y  Y  V  M  R  E  S  S  V  Q  R  L  G  S  F  C  A  I  V  C  S  W  G  F  W  I  S  S  T  P  M  F  S  F  V  S  F  F  I  *  F  I  H  I  Y  H  L  Q  Q  V  I  C  F  F  *  *  G  C  M  *  E  I  E  C  T  Y  A  N  A  F  N  T  S  Y  L  N  W  *  V  I  G  N  I  *  H  Y  C  N  M  Q  *  L  K  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29712" stop="29606"/>
                    <exon start="29508" stop="29415"/>
                    <exon start="29336" stop="29280"/>
                    <exon start="28878" stop="28744"/>
                    <exon start="28642" stop="28571"/>
                    <exon start="27583" stop="27470"/>
                    <exon start="27378" stop="27217"/>
                    <exon start="27129" stop="27001"/>
                    <exon start="26827" stop="26726"/>
                    <exon start="26635" stop="26556"/>
                    <exon start="25420" stop="25271"/>
                    <exon start="25130" stop="24563"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1767</number_coding_nucleotides>
                  <number_encoded_amino_acids>589</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRLLEVTQEAGEAGKDKKSHSMQIDDSSSKSSLSERAQLFDLAVSFLPGLNAQEIGVLFGALKPALKDEEGLIQKKAYKVLSMILQDCDEFISTKTEELLNLMIEALPACHFPAKRHRLDCLYFLIVHVTKDESEQRRRDSITSFMTEILLALKEANKKTRNRAYEILVKIGHACADEDKGGRKEHLHQFFNMIAGGLAGETPHMISAAVKGLARLAYEFSDLVSAAYSVLPSTFLLLKRENKEIIKANLGLLKVLVTKSTADGLQAHLRNMVEALLGWQNSTKNHFKAKVKLLIEMLIKKCGLDAVKEVMPEEHMKLLTNIRKIKERRERSLASNSEESRSRMTKATTSRLSRWNHTKIFSEFDDGESENSDAEYMDTKTTAGRRSKATLVSDSKASLLRSKKTRKAAKSLQEDLFDQLDDEPLDLLDQKKTRSALRASGNLKRKSESEDEAEIDSEGRLIIHDGDKKQKRVKPASDDLDVRSKAGSRFSESSRKTQKRRRTSESGWAYTGTEYASKKAGGDVKKKDRLEPYAYWPLDRKMMSRRPEHRAAARKGMSSIVKLTKKLEGKSASSVLSVKRSKTKKKNRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="36041" PGL_stop="31060"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36041" e_stop="35807"/>
            <exon e_start="35462" e_stop="35371"/>
            <exon e_start="31626" e_stop="31417"/>
            <exon e_start="31317" e_stop="31060"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.878" acc_prob="0.796" e_score="0.996"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.347" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="36041" e_stop="35807" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.878" acc_prob="0.796">
            <gDNA_intron_boundary i_start="35806" i_stop="35463" i_length="344"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35462" e_stop="35371" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35370" i_stop="31627" i_length="3744"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31626" e_stop="31417" e_length="210"/>
          </exon>
          <intron i_serial="3" don_prob="0.347" acc_prob="0.989">
            <gDNA_intron_boundary i_start="31416" i_stop="31318" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31317" e_stop="31060" e_length="258"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36041" stop="35807"/>
              <exon start="35462" stop="35371"/>
              <exon start="31626" stop="31417"/>
              <exon start="31317" stop="31060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331259" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGCTATAAGGGTTGCGCTGGAGGCACTCAAGATTTTAATACATGAATGCATTGATGAAAACTTGATCAAACAGGGTGTGGATAACATAATTAGTTCGAATACTGATGCGAAAAAATCTGGACCAACTATCATTGAGAAAATCTGTGCCACAATTGAGAGCTTGCTTACCTATCACTATGCAGCAGTTTGGGACATGTCATTTCAAGTGGTGGTTGCCATGTTTGATAAGCTAG : GTTGCTATTCTTCTCACCTTCTGAAGGGAACACTACAGAGTTTGGCTGATATGGAAAAGTTGCCAGATGAAGACTTCCCTTTCCGTAGACAG : CTGCACGAATGTGTTGGATCAGCTGTTGGTGCAATGGGACCTGAATCTTTTCTTACTCTTCTTCCTCTTAAACTGGATGTACAAGATCTGTCAGAGTCCAACATCTGGCTTTTCCCAATTCTAAAGCAAAATATTGTTGGTGCGCATTTAAGTTTCTTTACCAACTCAATTTTGCCAATGGTTGGAGCTATGAAGCAGAGGTCTGCAATG : CTTGAGCGCGAGGGAAAGATATATTCAGCAAGAACTATTGATGGAATTGTGTACTCATTGTGGTCACTGTTACCCTCATTTTGCAATTACCCTGTCGACACTGCTGAAAGCTTCAAGGATCTGGAGAAGGTATTCCGCAAAGCTCTACATGAAGAGCCTGATGTTTGTGGGATAATATGCTCCAGTTTGCAGATCCTCGTTCAGCAGAATGATAGCATTTTAAAAGGGACAGTTGATCTGTCTGATACTGAAACAAAC</gDNA_template>
            <first_frame> E  A  I  R  V  A  L  E  A  L  K  I  L  I  H  E  C  I  D  E  N  L  I  K  Q  G  V  D  N  I  I  S  S  N  T  D  A  K  K  S  G  P  T  I  I  E  K  I  C  A  T  I  E  S  L  L  T  Y  H  Y  A  A  V  W  D  M  S  F  Q  V  V  V  A  M  F  D  K  L   : G  C  Y  S  S  H  L  L  K  G  T  L  Q  S  L  A  D  M  E  K  L  P  D  E  D  F  P  F  R  R  Q  :  L  H  E  C  V  G  S  A  V  G  A  M  G  P  E  S  F  L  T  L  L  P  L  K  L  D  V  Q  D  L  S  E  S  N  I  W  L  F  P  I  L  K  Q  N  I  V  G  A  H  L  S  F  F  T  N  S  I  L  P  M  V  G  A  M  K  Q  R  S  A  M  :  L  E  R  E  G  K  I  Y  S  A  R  T  I  D  G  I  V  Y  S  L  W  S  L  L  P  S  F  C  N  Y  P  V  D  T  A  E  S  F  K  D  L  E  K  V  F  R  K  A  L  H  E  E  P  D  V  C  G  I  I  C  S  S  L  Q  I  L  V  Q  Q  N  D  S  I  L  K  G  T  V  D  L  S  D  T  E  T  N </first_frame>
            <second_frame>  K  L  *  G  L  R  W  R  H  S  R  F  *  Y  M  N  A  L  M  K  T  *  S  N  R  V  W  I  T  *  L  V  R  I  L  M  R  K  N  L  D  Q  L  S  L  R  K  S  V  P  Q  L  R  A  C  L  P  I  T  M  Q  Q  F  G  T  C  H  F  K  W  W  L  P  C  L  I  S  *  :  V  A  I  L  L  T  F  *  R  E  H  Y  R  V  W  L  I  W  K  S  C  Q  M  K  T  S  L  S  V  D  S :   C  T  N  V  L  D  Q  L  L  V  Q  W  D  L  N  L  F  L  L  F  F  L  L  N  W  M  Y  K  I  C  Q  S  P  T  S  G  F  S  Q  F  *  S  K  I  L  L  V  R  I  *  V  S  L  P  T  Q  F  C  Q  W  L  E  L  *  S  R  G  L  Q  C :   L  S  A  R  E  R  Y  I  Q  Q  E  L  L  M  E  L  C  T  H  C  G  H  C  Y  P  H  F  A  I  T  L  S  T  L  L  K  A  S  R  I  W  R  R  Y  S  A  K  L  Y  M  K  S  L  M  F  V  G  *  Y  A  P  V  C  R  S  S  F  S  R  M  I  A  F  *  K  G  Q  L  I  C  L  I  L  K  Q   </second_frame>
            <third_frame>   S  Y  K  G  C  A  G  G  T  Q  D  F  N  T  *  M  H  *  *  K  L  D  Q  T  G  C  G  *  H  N  *  F  E  Y  *  C  E  K  I  W  T  N  Y  H  *  E  N  L  C  H  N  *  E  L  A  Y  L  S  L  C  S  S  L  G  H  V  I  S  S  G  G  C  H  V  *  *  A  R :   L  L  F  F  S  P  S  E  G  N  T  T  E  F  G  *  Y  G  K  V  A  R  *  R  L  P  F  P  *  T   : A  A  R  M  C  W  I  S  C  W  C  N  G  T  *  I  F  S  Y  S  S  S  S  *  T  G  C  T  R  S  V  R  V  Q  H  L  A  F  P  N  S  K  A  K  Y  C  W  C  A  F  K  F  L  Y  Q  L  N  F  A  N  G  W  S  Y  E  A  E  V  C  N   : A  *  A  R  G  K  D  I  F  S  K  N  Y  *  W  N  C  V  L  I  V  V  T  V  T  L  I  L  Q  L  P  C  R  H  C  *  K  L  Q  G  S  G  E  G  I  P  Q  S  S  T  *  R  A  *  C  L  W  D  N  M  L  Q  F  A  D  P  R  S  A  E  *  *  H  F  K  R  D  S  *  S  V  *  Y  *  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36041" stop="35807"/>
                    <exon start="35462" stop="35371"/>
                    <exon start="31626" stop="31417"/>
                    <exon start="31317" stop="31060"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAIRVALEALKILIHECIDENLIKQGVDNIISSNTDAKKSGPTIIEKICATIESLLTYHYAAVWDMSFQVVVAMFDKLGCYSSHLLKGTLQSLADMEKLPDEDFPFRRQLHECVGSAVGAMGPESFLTLLPLKLDVQDLSESNIWLFPILKQNIVGAHLSFFTNSILPMVGAMKQRSAMLEREGKIYSARTIDGIVYSLWSLLPSFCNYPVDTAESFKDLEKVFRKALHEEPDVCGIICSSLQILVQQNDSILKGTVDLSDTETN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="44481" PGL_stop="43631"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44481" e_stop="43631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="44481" e_stop="43631" e_length="851"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44481" stop="43631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44403" stop="43659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337538" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAATTAAATAAATCACAGCTAATCCTTGCCCCCCTCTCTCTTTTTTTTGTCTCCCACATAAATCATAATACAATACAATACTTTGCTTCCTACCAACACATACATTCACAAAAATGATGAAAACTCTACTTGTTTCTCTGTTTCTAATTTCATCAGTGACTACATCATCATCTTCTTCTGCTAGTGACATTGTCCGCTCTTCCTGCGTGCACGCCAGCTATCCCACAATTTGCGTCAGAACACTCTCTTCATACTCGGACACACCCATTAACACCCCGCAGGATTTAGCTCAAGCCGCGGTGAAAATTACCCTTTCTCGAGCAGGTAAAGCGTCTGGGTTCCTGTCTCGGGTGAAAGTGGAAAGCAAAAGAGAGAAAGGGGCATTGAGTGATTGTATCGAACAGATGGGTGACTCGATGGAGGAGCTGAGGAAGAGTTTGTCAGAGCTTAAACATGTACGCAGGGGAAATGCATTTAAGTGGCAAATGAGCAATTTGGAGACGTGGGTAAGTGCTGCTTTGACAAATGAAGATACATGTCTTGATGGATTCAAGGAAATTGATGGCAAAATCAGGTCTGATGTGAAACGAAAGATTACGAATGTTGCTAGAGTTACTAGTAATGCACTTTACCTTATCAATCGACTGGATGATTCTGCAAACAAAATTACTCATCCTTGATCATTAATTCGGTTAATTAACATTACCGGGAGAAATAATAGCGAGAGCTTAATGCATTTGGTTGTTCTTTCTTCTTTTTCTGCGGTAACTATGCATTTTATTGGTTAGAAACCAGTATTATTAATGGTGCAATATTTATAAGGTAAGAATTATCTAAATTCCAATTTGGC</gDNA_template>
            <first_frame> A  I  K  *  I  T  A  N  P  C  P  P  L  S  F  F  C  L  P  H  K  S  *  Y  N  T  I  L  C  F  L  P  T  H  T  F  T  K  M  M  K  T  L  L  V  S  L  F  L  I  S  S  V  T  T  S  S  S  S  S  A  S  D  I  V  R  S  S  C  V  H  A  S  Y  P  T  I  C  V  R  T  L  S  S  Y  S  D  T  P  I  N  T  P  Q  D  L  A  Q  A  A  V  K  I  T  L  S  R  A  G  K  A  S  G  F  L  S  R  V  K  V  E  S  K  R  E  K  G  A  L  S  D  C  I  E  Q  M  G  D  S  M  E  E  L  R  K  S  L  S  E  L  K  H  V  R  R  G  N  A  F  K  W  Q  M  S  N  L  E  T  W  V  S  A  A  L  T  N  E  D  T  C  L  D  G  F  K  E  I  D  G  K  I  R  S  D  V  K  R  K  I  T  N  V  A  R  V  T  S  N  A  L  Y  L  I  N  R  L  D  D  S  A  N  K  I  T  H  P  *  S  L  I  R  L  I  N  I  T  G  R  N  N  S  E  S  L  M  H  L  V  V  L  S  S  F  S  A  V  T  M  H  F  I  G  *  K  P  V  L  L  M  V  Q  Y  L  *  G  K  N  Y  L  N  S  N  L   </first_frame>
            <second_frame>  Q  L  N  K  S  Q  L  I  L  A  P  L  S  L  F  F  V  S  H  I  N  H  N  T  I  Q  Y  F  A  S  Y  Q  H  I  H  S  Q  K  *  *  K  L  Y  L  F  L  C  F  *  F  H  Q  *  L  H  H  H  L  L  L  L  V  T  L  S  A  L  P  A  C  T  P  A  I  P  Q  F  A  S  E  H  S  L  H  T  R  T  H  P  L  T  P  R  R  I  *  L  K  P  R  *  K  L  P  F  L  E  Q  V  K  R  L  G  S  C  L  G  *  K  W  K  A  K  E  R  K  G  H  *  V  I  V  S  N  R  W  V  T  R  W  R  S  *  G  R  V  C  Q  S  L  N  M  Y  A  G  E  M  H  L  S  G  K  *  A  I  W  R  R  G  *  V  L  L  *  Q  M  K  I  H  V  L  M  D  S  R  K  L  M  A  K  S  G  L  M  *  N  E  R  L  R  M  L  L  E  L  L  V  M  H  F  T  L  S  I  D  W  M  I  L  Q  T  K  L  L  I  L  D  H  *  F  G  *  L  T  L  P  G  E  I  I  A  R  A  *  C  I  W  L  F  F  L  L  F  L  R  *  L  C  I  L  L  V  R  N  Q  Y  Y  *  W  C  N  I  Y  K  V  R  I  I  *  I  P  I  W  </second_frame>
            <third_frame>   N  *  I  N  H  S  *  S  L  P  P  S  L  F  F  L  S  P  T  *  I  I  I  Q  Y  N  T  L  L  P  T  N  T  Y  I  H  K  N  D  E  N  S  T  C  F  S  V  S  N  F  I  S  D  Y  I  I  I  F  F  C  *  *  H  C  P  L  F  L  R  A  R  Q  L  S  H  N  L  R  Q  N  T  L  F  I  L  G  H  T  H  *  H  P  A  G  F  S  S  S  R  G  E  N  Y  P  F  S  S  R  *  S  V  W  V  P  V  S  G  E  S  G  K  Q  K  R  E  R  G  I  E  *  L  Y  R  T  D  G  *  L  D  G  G  A  E  E  E  F  V  R  A  *  T  C  T  Q  G  K  C  I  *  V  A  N  E  Q  F  G  D  V  G  K  C  C  F  D  K  *  R  Y  M  S  *  W  I  Q  G  N  *  W  Q  N  Q  V  *  C  E  T  K  D  Y  E  C  C  *  S  Y  *  *  C  T  L  P  Y  Q  S  T  G  *  F  C  K  Q  N  Y  S  S  L  I  I  N  S  V  N  *  H  Y  R  E  K  *  *  R  E  L  N  A  F  G  C  S  F  F  F  F  C  G  N  Y  A  F  Y  W  L  E  T  S  I  I  N  G  A  I  F  I  R  *  E  L  S  K  F  Q  F  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44412" stop="43801"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNTILCFLPTHTFTKMMKTLLVSLFLISSVTTSSSSSASDIVRSSCVHASYPTICVRTLSSYSDTPINTPQDLAQAAVKITLSRAGKASGFLSRVKVESKREKGALSDCIEQMGDSMEELRKSLSELKHVRRGNAFKWQMSNLETWVSAALTNEDTCLDGFKEIDGKIRSDVKRKITNVARVTSNALYLINRLDDSANKITHP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="51202" PGL_stop="65208"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51202" e_stop="51589"/>
            <exon e_start="52416" e_stop="52621"/>
            <exon e_start="52697" e_stop="52900"/>
            <exon e_start="53170" e_stop="53280"/>
            <exon e_start="53373" e_stop="53468"/>
            <exon e_start="53627" e_stop="53672"/>
            <exon e_start="53779" e_stop="53858"/>
            <exon e_start="54481" e_stop="54549"/>
            <exon e_start="54687" e_stop="54771"/>
            <exon e_start="57096" e_stop="57250"/>
            <exon e_start="57348" e_stop="57428"/>
            <exon e_start="61905" e_stop="61964"/>
            <exon e_start="62416" e_stop="62570"/>
            <exon e_start="64814" e_stop="65208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.843" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.992" e_score="0.995"/>
          <exon-intron don_prob="0.997" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.407" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.816" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51202" e_stop="51589" e_length="388"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="51590" i_stop="52415" i_length="826"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52416" e_stop="52621" e_length="206"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.843">
            <gDNA_intron_boundary i_start="52622" i_stop="52696" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="52697" e_stop="52900" e_length="204"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.992">
            <gDNA_intron_boundary i_start="52901" i_stop="53169" i_length="269"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53170" e_stop="53280" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.854">
            <gDNA_intron_boundary i_start="53281" i_stop="53372" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53373" e_stop="53468" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.407" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53469" i_stop="53626" i_length="158"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="53627" e_stop="53672" e_length="46"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53673" i_stop="53778" i_length="106"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="53779" e_stop="53858" e_length="80"/>
          </exon>
          <intron i_serial="7" don_prob="0.982" acc_prob="0.994">
            <gDNA_intron_boundary i_start="53859" i_stop="54480" i_length="622"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="54481" e_stop="54549" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.816">
            <gDNA_intron_boundary i_start="54550" i_stop="54686" i_length="137"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="54687" e_stop="54771" e_length="85"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.932">
            <gDNA_intron_boundary i_start="54772" i_stop="57095" i_length="2324"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="57096" e_stop="57250" e_length="155"/>
          </exon>
          <intron i_serial="10" don_prob="0.990" acc_prob="0.799">
            <gDNA_intron_boundary i_start="57251" i_stop="57347" i_length="97"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="57348" e_stop="57428" e_length="81"/>
          </exon>
          <intron i_serial="11" don_prob="0.952" acc_prob="0.955">
            <gDNA_intron_boundary i_start="57429" i_stop="61904" i_length="4476"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="61905" e_stop="61964" e_length="60"/>
          </exon>
          <intron i_serial="12" don_prob="0.993" acc_prob="0.989">
            <gDNA_intron_boundary i_start="61965" i_stop="62415" i_length="451"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="62416" e_stop="62570" e_length="155"/>
          </exon>
          <intron i_serial="13" don_prob="0.883" acc_prob="0.994">
            <gDNA_intron_boundary i_start="62571" i_stop="64813" i_length="2243"/>
          </intron>
          <exon e_serial="14" e_score="0.970">
            <gDNA_exon_boundary e_start="64814" e_stop="65208" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51202" stop="51589"/>
              <exon start="52416" stop="52621"/>
              <exon start="52697" stop="52900"/>
              <exon start="53170" stop="53278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53200" stop="53280"/>
              <exon start="53373" stop="53468"/>
              <exon start="53627" stop="53672"/>
              <exon start="53779" stop="53858"/>
              <exon start="54481" stop="54549"/>
              <exon start="54687" stop="54771"/>
              <exon start="57096" stop="57250"/>
              <exon start="57348" stop="57428"/>
              <exon start="61905" stop="61964"/>
              <exon start="62416" stop="62570"/>
              <exon start="64814" stop="65208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325875" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTTTCATCTTTAGAGTTCAAAGTATATATAATATATAAAGGGCTTGTATAGTTTGATCGGAATTTTAAGAAAATGGCGTCATCGACGGTATCGTCATGGATGATTGGGTCATGCATGTCAGTTCCTGGTAAAAAGGAGCATGAATTACATGGTTTTTTTGGGATTTATAAGTCTAAATGCAAATGGGCTATTCCAAGTAAAACAACCAAAGGGGTTTTCATAAACTCCAAATCCAATAGTGCTCTTACATTTCCAATCTCTTCTTCTTTCTTGTCTCAACCTAACCTTACCATTACTGGATTTTCCTCTTCCAATTCCTGCTTTCTCTTTACCGGATCCGCAGCTAATCCTCCTCCAACAAAAATTATCTCTTATGCTCAAACAG : GGGAGGTAATGGCAATTGCATCCGAATCGGCCATGGAAGCCGCACCAAAGAAGAAACCTCCAACCAAGGAAAGGCGAGTTGTTGTGACAGGGATGGGTGTGGCCACATCAGTTGGTCATGATCCCCACACGTTTTATGAAAACCTGCTTGAAGGTGTCAGTGGCATAAGTGAAATAGAAGCTTTTGATTGTTCTCAGTATCCAACA : AGAATTGCTGGAGAGATCAAGTCTTTCTCAACTGATGGCTGGATTGTACCCAAACTTTCTAAAAGAATGGACAAGTTCATGCTTTACATGCTAACGGCTGGTAAGAAAGCACTCTCAGATGGTGGAATTACTGAAGACATGATGGATGAATTGGATAAAAGAAGATGTGGAGTTTTAATTGGCTCTGCTATGGGTGGGATGAAG : GTTTTCAATGATGCAATAGAGGCTCTAAGGGTTTCCTATAGGAAGATGAATCCTTTTTGTGTCCCATTTGCAACTACAAACATGGGTTCTGCCATGCTTGCCATGGACCTG : GGATGGATGGGTCCAAATTATTCAATTTCAACAGCATGTGCAACAAGCAACTTCTGCATATTGAATGCCGCTAACCACATCATTAGAGGTGAAGCT : GACATGATGCTGTGTGGTGGATCAGATGCAGCAATTATACCAATTG : GATTGGGAGGATTTGTTGCTTGCAGAGCACTTTCACAGAGAAATACCGACCCTTCAAGAGCTTCTCGGCCTTGGGATAGT : AATCGCGATGGATTTGTCATGGGTGAAGGAGCTGGTGTCCTGCTTCTGGAAGAACTTGAGCATGCCAAG : CAAAGAGGTGCAACAATCTATGCTGAATTTCTAGGTGGAAGTTTTACTTGTGATGCTTATCACATGACTGAGCCTCATCCTAAAG : GAACTGGAGTCATCCTATGTGTAGAGAAGGCATTAGCTCAGTCAGGGGTATCCAAGGAAGATGTGAACTACATTAATGCGCATGCAACATCCACACCAGCAGGAGATCTTAAGGAGTATCAAGCTCTTGTTCATTGTTTTGGCCAAAATCCAGAG : TTGCGAGTTAACTCCACAAAATCTATGGTTGGTCACCTGCTTGGAGCTGCTGGTGCTGTTGAGGCTGTGGCAACTATCCAG : GCAATACGAACTGGTTGGGTTCATCCAAATATTAATCTTGAAAACCCAGATGAAGGCGTG : GATACAAATATACTTGTTGGTCCCATAAAGGAACGACTGGATATTAAGGTGGCATTATCTAATTCATTTGGATTTGGTGGCCACAACTCATCAATCTTATTTGCTCCTTACAAGTAGATCTCTCAAACAATGTTGATGCATCTGACAGATACAAG : GAATATTTGGAAGGATCCTTGATTCCCAGAGTTACTTGAAGGACACTCGTAGAAGAGGCCTCAGTCTCGAAGAATTTGTCTTCAGGAAGATAGTCTAATGACGGTGGTACTTCCCTCTGATATACAGAATTTGATTGTTGGAGAAAGAAGATGCCGAAGCAAAGAATGGGGGGAGGATCAAGTTTTTTTTATCTCCATTTCTCTTAGCTAAATTATACTTACTTAACTAAATTGTTTCTCTTACACATAGCAGCAAATGACCCTTAGGTGTTTGCATATGGGCCTTAATGCTAGTGTACTAGTTTCTTTGTATACCATATATATTCTGCAAATTGGACTTCTTGATATTTGAATGAACAAACTCTGAAGGACTTCCTCAAAACGAAAAAAATAAG</gDNA_template>
            <first_frame> L  L  S  S  L  E  F  K  V  Y  I  I  Y  K  G  L  V  *  F  D  R  N  F  K  K  M  A  S  S  T  V  S  S  W  M  I  G  S  C  M  S  V  P  G  K  K  E  H  E  L  H  G  F  F  G  I  Y  K  S  K  C  K  W  A  I  P  S  K  T  T  K  G  V  F  I  N  S  K  S  N  S  A  L  T  F  P  I  S  S  S  F  L  S  Q  P  N  L  T  I  T  G  F  S  S  S  N  S  C  F  L  F  T  G  S  A  A  N  P  P  P  T  K  I  I  S  Y  A  Q  T   : G  E  V  M  A  I  A  S  E  S  A  M  E  A  A  P  K  K  K  P  P  T  K  E  R  R  V  V  V  T  G  M  G  V  A  T  S  V  G  H  D  P  H  T  F  Y  E  N  L  L  E  G  V  S  G  I  S  E  I  E  A  F  D  C  S  Q  Y  P  T  :  R  I  A  G  E  I  K  S  F  S  T  D  G  W  I  V  P  K  L  S  K  R  M  D  K  F  M  L  Y  M  L  T  A  G  K  K  A  L  S  D  G  G  I  T  E  D  M  M  D  E  L  D  K  R  R  C  G  V  L  I  G  S  A  M  G  G  M  K  :  V  F  N  D  A  I  E  A  L  R  V  S  Y  R  K  M  N  P  F  C  V  P  F  A  T  T  N  M  G  S  A  M  L  A  M  D  L  :  G  W  M  G  P  N  Y  S  I  S  T  A  C  A  T  S  N  F  C  I  L  N  A  A  N  H  I  I  R  G  E  A  :  D  M  M  L  C  G  G  S  D  A  A  I  I  P  I   : G  L  G  G  F  V  A  C  R  A  L  S  Q  R  N  T  D  P  S  R  A  S  R  P  W  D  S  :  N  R  D  G  F  V  M  G  E  G  A  G  V  L  L  L  E  E  L  E  H  A  K  :  Q  R  G  A  T  I  Y  A  E  F  L  G  G  S  F  T  C  D  A  Y  H  M  T  E  P  H  P  K   : G  T  G  V  I  L  C  V  E  K  A  L  A  Q  S  G  V  S  K  E  D  V  N  Y  I  N  A  H  A  T  S  T  P  A  G  D  L  K  E  Y  Q  A  L  V  H  C  F  G  Q  N  P  E  :  L  R  V  N  S  T  K  S  M  V  G  H  L  L  G  A  A  G  A  V  E  A  V  A  T  I  Q  :  A  I  R  T  G  W  V  H  P  N  I  N  L  E  N  P  D  E  G  V  :  D  T  N  I  L  V  G  P  I  K  E  R  L  D  I  K  V  A  L  S  N  S  F  G  F  G  G  H  N  S  S  I  L  F  A  P  Y  K  *  I  S  Q  T  M  L  M  H  L  T  D  T  R :   N  I  W  K  D  P  *  F  P  E  L  L  E  G  H  S  *  K  R  P  Q  S  R  R  I  C  L  Q  E  D  S  L  M  T  V  V  L  P  S  D  I  Q  N  L  I  V  G  E  R  R  C  R  S  K  E  W  G  E  D  Q  V  F  F  I  S  I  S  L  S  *  I  I  L  T  *  L  N  C  F  S  Y  T  *  Q  Q  M  T  L  R  C  L  H  M  G  L  N  A  S  V  L  V  S  L  Y  T  I  Y  I  L  Q  I  G  L  L  D  I  *  M  N  K  L  *  R  T  S  S  K  R  K  K  *  </first_frame>
            <second_frame>  F  F  H  L  *  S  S  K  Y  I  *  Y  I  K  G  L  Y  S  L  I  G  I  L  R  K  W  R  H  R  R  Y  R  H  G  *  L  G  H  A  C  Q  F  L  V  K  R  S  M  N  Y  M  V  F  L  G  F  I  S  L  N  A  N  G  L  F  Q  V  K  Q  P  K  G  F  S  *  T  P  N  P  I  V  L  L  H  F  Q  S  L  L  L  S  C  L  N  L  T  L  P  L  L  D  F  P  L  P  I  P  A  F  S  L  P  D  P  Q  L  I  L  L  Q  Q  K  L  S  L  M  L  K  Q  :  G  R  *  W  Q  L  H  P  N  R  P  W  K  P  H  Q  R  R  N  L  Q  P  R  K  G  E  L  L  *  Q  G  W  V  W  P  H  Q  L  V  M  I  P  T  R  F  M  K  T  C  L  K  V  S  V  A  *  V  K  *  K  L  L  I  V  L  S  I  Q  Q :   E  L  L  E  R  S  S  L  S  Q  L  M  A  G  L  Y  P  N  F  L  K  E  W  T  S  S  C  F  T  C  *  R  L  V  R  K  H  S  Q  M  V  E  L  L  K  T  *  W  M  N  W  I  K  E  D  V  E  F  *  L  A  L  L  W  V  G  *  R :   F  S  M  M  Q  *  R  L  *  G  F  P  I  G  R  *  I  L  F  V  S  H  L  Q  L  Q  T  W  V  L  P  C  L  P  W  T  W :   D  G  W  V  Q  I  I  Q  F  Q  Q  H  V  Q  Q  A  T  S  A  Y  *  M  P  L  T  T  S  L  E  V  K  L :   T  *  C  C  V  V  D  Q  M  Q  Q  L  Y  Q  L  :  D  W  E  D  L  L  L  A  E  H  F  H  R  E  I  P  T  L  Q  E  L  L  G  L  G  I  V :   I  A  M  D  L  S  W  V  K  E  L  V  S  C  F  W  K  N  L  S  M  P  S :   K  E  V  Q  Q  S  M  L  N  F  *  V  E  V  L  L  V  M  L  I  T  *  L  S  L  I  L  K  :  E  L  E  S  S  Y  V  *  R  R  H  *  L  S  Q  G  Y  P  R  K  M  *  T  T  L  M  R  M  Q  H  P  H  Q  Q  E  I  L  R  S  I  K  L  L  F  I  V  L  A  K  I  Q  S :   C  E  L  T  P  Q  N  L  W  L  V  T  C  L  E  L  L  V  L  L  R  L  W  Q  L  S  R :   Q  Y  E  L  V  G  F  I  Q  I  L  I  L  K  T  Q  M  K  A  W :   I  Q  I  Y  L  L  V  P  *  R  N  D  W  I  L  R  W  H  Y  L  I  H  L  D  L  V  A  T  T  H  Q  S  Y  L  L  L  T  S  R  S  L  K  Q  C  *  C  I  *  Q  I  Q   : G  I  F  G  R  I  L  D  S  Q  S  Y  L  K  D  T  R  R  R  G  L  S  L  E  E  F  V  F  R  K  I  V  *  *  R  W  Y  F  P  L  I  Y  R  I  *  L  L  E  K  E  D  A  E  A  K  N  G  G  R  I  K  F  F  L  S  P  F  L  L  A  K  L  Y  L  L  N  *  I  V  S  L  T  H  S  S  K  *  P  L  G  V  C  I  W  A  L  M  L  V  Y  *  F  L  C  I  P  Y  I  F  C  K  L  D  F  L  I  F  E  *  T  N  S  E  G  L  P  Q  N  E  K  N  K </second_frame>
            <third_frame>   S  F  I  F  R  V  Q  S  I  Y  N  I  *  R  A  C  I  V  *  S  E  F  *  E  N  G  V  I  D  G  I  V  M  D  D  W  V  M  H  V  S  S  W  *  K  G  A  *  I  T  W  F  F  W  D  L  *  V  *  M  Q  M  G  Y  S  K  *  N  N  Q  R  G  F  H  K  L  Q  I  Q  *  C  S  Y  I  S  N  L  F  F  F  L  V  S  T  *  P  Y  H  Y  W  I  F  L  F  Q  F  L  L  S  L  Y  R  I  R  S  *  S  S  S  N  K  N  Y  L  L  C  S  N  R :   G  G  N  G  N  C  I  R  I  G  H  G  S  R  T  K  E  E  T  S  N  Q  G  K  A  S  C  C  D  R  D  G  C  G  H  I  S  W  S  *  S  P  H  V  L  *  K  P  A  *  R  C  Q  W  H  K  *  N  R  S  F  *  L  F  S  V  S  N   : K  N  C  W  R  D  Q  V  F  L  N  *  W  L  D  C  T  Q  T  F  *  K  N  G  Q  V  H  A  L  H  A  N  G  W  *  E  S  T  L  R  W  W  N  Y  *  R  H  D  G  *  I  G  *  K  K  M  W  S  F  N  W  L  C  Y  G  W  D  E   : G  F  Q  *  C  N  R  G  S  K  G  F  L  *  E  D  E  S  F  L  C  P  I  C  N  Y  K  H  G  F  C  H  A  C  H  G  P   : G  M  D  G  S  K  L  F  N  F  N  S  M  C  N  K  Q  L  L  H  I  E  C  R  *  P  H  H  *  R  *  S   : *  H  D  A  V  W  W  I  R  C  S  N  Y  T  N  W :   I  G  R  I  C  C  L  Q  S  T  F  T  E  K  Y  R  P  F  K  S  F  S  A  L  G  *   : *  S  R  W  I  C  H  G  *  R  S  W  C  P  A  S  G  R  T  *  A  C  Q   : A  K  R  C  N  N  L  C  *  I  S  R  W  K  F  Y  L  *  C  L  S  H  D  *  A  S  S  *  R :   N  W  S  H  P  M  C  R  E  G  I  S  S  V  R  G  I  Q  G  R  C  E  L  H  *  C  A  C  N  I  H  T  S  R  R  S  *  G  V  S  S  S  C  S  L  F  W  P  K  S  R   : V  A  S  *  L  H  K  I  Y  G  W  S  P  A  W  S  C  W  C  C  *  G  C  G  N  Y  P   : G  N  T  N  W  L  G  S  S  K  Y  *  S  *  K  P  R  *  R  R   : G  Y  K  Y  T  C  W  S  H  K  G  T  T  G  Y  *  G  G  I  I  *  F  I  W  I  W  W  P  Q  L  I  N  L  I  C  S  L  Q  V  D  L  S  N  N  V  D  A  S  D  R  Y  K  :  E  Y  L  E  G  S  L  I  P  R  V  T  *  R  T  L  V  E  E  A  S  V  S  K  N  L  S  S  G  R  *  S  N  D  G  G  T  S  L  *  Y  T  E  F  D  C  W  R  K  K  M  P  K  Q  R  M  G  G  G  S  S  F  F  Y  L  H  F  S  *  L  N  Y  T  Y  L  T  K  L  F  L  L  H  I  A  A  N  D  P  *  V  F  A  Y  G  P  *  C  *  C  T  S  F  F  V  Y  H  I  Y  S  A  N  W  T  S  *  Y  L  N  E  Q  T  L  K  D  F  L  K  T  K  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51256" stop="51589"/>
                    <exon start="52416" stop="52621"/>
                    <exon start="52697" stop="52900"/>
                    <exon start="53170" stop="53280"/>
                    <exon start="53373" stop="53468"/>
                    <exon start="53627" stop="53672"/>
                    <exon start="53779" stop="53858"/>
                    <exon start="54481" stop="54549"/>
                    <exon start="54687" stop="54771"/>
                    <exon start="57096" stop="57250"/>
                    <exon start="57348" stop="57428"/>
                    <exon start="61905" stop="61964"/>
                    <exon start="62416" stop="62532"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1641</number_coding_nucleotides>
                  <number_encoded_amino_acids>547</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDRNFKKMASSTVSSWMIGSCMSVPGKKEHELHGFFGIYKSKCKWAIPSKTTKGVFINSKSNSALTFPISSSFLSQPNLTITGFSSSNSCFLFTGSAANPPPTKIISYAQTGEVMAIASESAMEAAPKKKPPTKERRVVVTGMGVATSVGHDPHTFYENLLEGVSGISEIEAFDCSQYPTRIAGEIKSFSTDGWIVPKLSKRMDKFMLYMLTAGKKALSDGGITEDMMDELDKRRCGVLIGSAMGGMKVFNDAIEALRVSYRKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEADMMLCGGSDAAIIPIGLGGFVACRALSQRNTDPSRASRPWDSNRDGFVMGEGAGVLLLEELEHAKQRGATIYAEFLGGSFTCDAYHMTEPHPKGTGVILCVEKALAQSGVSKEDVNYINAHATSTPAGDLKEYQALVHCFGQNPELRVNSTKSMVGHLLGAAGAVEAVATIQAIRTGWVHPNINLENPDEGVDTNILVGPIKERLDIKVALSNSFGFGGHNSSILFAPYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="61129" e_stop="61781"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="61129" e_stop="61781" e_length="653"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61129" stop="61781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329060" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTACAAGGAAGTCGCATCATATTCATAAAAGTATATGTAATCTGAGTTTTGAAAGAACATATTCATGCCTGTAGAAGACATTTTCAAAGGAACATTGGTGGGAGCCTTGAAACAATTCACAGCAGGAGCTTTCCATAGTGGTTAATTATTTTATGTTAGATATTGTTGCTTGCTGCTGTGAGTTACTCTAGCCTGAAGTTAAGAACCCAAAAGAACTGGGAGTAGAATAACTTTGTCAACTTAAATTATTTAAATAGATGTTGACTGAAGAAGCAAAAGAGATGAACATTATCTAATTTTTCTTTACCATGTGGGTATAGTTTTTCTTTTTGGCTACGAGAGTAGCTATGGCGATTGTTTTAGGATAAGTGATTACCTATTTTGAGATAATTCAAAGACAATTTTCTGCTGCTAGATAGTTCCTTGCAGTTTGTTGGTGCTGCACAGTGTAATTGAAGTTAGATTAAAGTTTAATCATATCATCTTTGTTCTTGAGCTTCATTATAATCTGCCTTGACAGTGGAAAGGATGCTGAAGATAGACACTCCTTGGACATTTACTTGAGCATGTTGCAGTAACATGTTTTTGTTATAGTTTATTTGTGATAATGATTAATTAATCTGATAGTACATAGATGTTGCAGAACTTATTCT</gDNA_template>
            <first_frame> V  Q  G  S  R  I  I  F  I  K  V  Y  V  I  *  V  L  K  E  H  I  H  A  C  R  R  H  F  Q  R  N  I  G  G  S  L  E  T  I  H  S  R  S  F  P  *  W  L  I  I  L  C  *  I  L  L  L  A  A  V  S  Y  S  S  L  K  L  R  T  Q  K  N  W  E  *  N  N  F  V  N  L  N  Y  L  N  R  C  *  L  K  K  Q  K  R  *  T  L  S  N  F  S  L  P  C  G  Y  S  F  S  F  W  L  R  E  *  L  W  R  L  F  *  D  K  *  L  P  I  L  R  *  F  K  D  N  F  L  L  L  D  S  S  L  Q  F  V  G  A  A  Q  C  N  *  S  *  I  K  V  *  S  Y  H  L  C  S  *  A  S  L  *  S  A  L  T  V  E  R  M  L  K  I  D  T  P  W  T  F  T  *  A  C  C  S  N  M  F  L  L  *  F  I  C  D  N  D  *  L  I  *  *  Y  I  D  V  A  E  L  I   </first_frame>
            <second_frame>  Y  K  E  V  A  S  Y  S  *  K  Y  M  *  S  E  F  *  K  N  I  F  M  P  V  E  D  I  F  K  G  T  L  V  G  A  L  K  Q  F  T  A  G  A  F  H  S  G  *  L  F  Y  V  R  Y  C  C  L  L  L  *  V  T  L  A  *  S  *  E  P  K  R  T  G  S  R  I  T  L  S  T  *  I  I  *  I  D  V  D  *  R  S  K  R  D  E  H  Y  L  I  F  L  Y  H  V  G  I  V  F  L  F  G  Y  E  S  S  Y  G  D  C  F  R  I  S  D  Y  L  F  *  D  N  S  K  T  I  F  C  C  *  I  V  P  C  S  L  L  V  L  H  S  V  I  E  V  R  L  K  F  N  H  I  I  F  V  L  E  L  H  Y  N  L  P  *  Q  W  K  G  C  *  R  *  T  L  L  G  H  L  L  E  H  V  A  V  T  C  F  C  Y  S  L  F  V  I  M  I  N  *  S  D  S  T  *  M  L  Q  N  L  F  </second_frame>
            <third_frame>   T  R  K  S  H  H  I  H  K  S  I  C  N  L  S  F  E  R  T  Y  S  C  L  *  K  T  F  S  K  E  H  W  W  E  P  *  N  N  S  Q  Q  E  L  S  I  V  V  N  Y  F  M  L  D  I  V  A  C  C  C  E  L  L  *  P  E  V  K  N  P  K  E  L  G  V  E  *  L  C  Q  L  K  L  F  K  *  M  L  T  E  E  A  K  E  M  N  I  I  *  F  F  F  T  M  W  V  *  F  F  F  L  A  T  R  V  A  M  A  I  V  L  G  *  V  I  T  Y  F  E  I  I  Q  R  Q  F  S  A  A  R  *  F  L  A  V  C  W  C  C  T  V  *  L  K  L  D  *  S  L  I  I  S  S  L  F  L  S  F  I  I  I  C  L  D  S  G  K  D  A  E  D  R  H  S  L  D  I  Y  L  S  M  L  Q  *  H  V  F  V  I  V  Y  L  *  *  *  L  I  N  L  I  V  H  R  C  C  R  T  Y  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0025K09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="87987" PGL_stop="88355"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87987" e_stop="88355"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="87987" e_stop="88355" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87987" stop="88355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339612" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGTTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGACTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTTTGGGTTGTACTATACAAGTATAATTACAGTTGAATCACATGCCATAGTAAACAAAAGGTTTAGTAATTTTAATGATTTTATCATTTGGCATG</gDNA_template>
            <first_frame> L  *  K  W  H  M  S  T  Q  Y  Q  V  V  Q  N  *  L  R  V  L  E  E  R  P  Y  Y  Y  L  E  G  Q  Y  *  A  L  I  M  H  Y  I  V  V  S  L  K  E  T  Y  *  V  S  K  L  F  A  K  M  A  I  M  L  R  R  L  M  K  E  R  L  N  T  F  T  L  L  Q  L  M  *  R  R  K  L  C  M  K  N  Y  L  H  F  L  L  G  C  T  I  Q  V  *  L  Q  L  N  H  M  P  *  *  T  K  G  L  V  I  L  M  I  L  S  F  G  M </first_frame>
            <second_frame>  Y  E  N  G  I  C  Q  H  N  I  R  *  Y  K  I  N  *  G  F  W  K  S  D  L  I  T  T  W  R  D  N  I  K  H  *  *  C  I  I  L  *  *  V  S  K  K  L  I  K  F  Q  S  Y  S  P  K  W  L  S  C  *  D  D  *  *  R  K  G  *  I  P  L  H  Y  Y  N  *  C  R  E  E  N  C  A  *  K  I  T  C  I  F  F  W  V  V  L  Y  K  Y  N  Y  S  *  I  T  C  H  S  K  Q  K  V  *  *  F  *  *  F  Y  H  L  A   </second_frame>
            <third_frame>   M  K  M  A  Y  V  N  T  I  S  G  S  T  K  L  I  E  G  S  G  R  A  T  L  L  L  P  G  G  T  I  L  S  I  D  N  A  L  Y  C  S  K  S  Q  R  N  L  L  S  F  K  V  I  R  Q  N  G  Y  H  V  E  T  T  N  E  G  K  V  E  Y  L  Y  I  T  T  I  N  V  E  K  K  I  V  H  E  K  L  P  A  F  S  F  G  L  Y  Y  T  S  I  I  T  V  E  S  H  A  I  V  N  K  R  F  S  N  F  N  D  F  I  I  W  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0025K09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87989" stop="88354"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKMAYVNTISGSTKLIEGSGRATLLLPGGTILSIDNALYCSKSQRNLLSFKVIRQNGYHVETTNEGKVEYLYITTINVEKKIVHEKLPAFSFGLYYTSIITVESHAIVNKRFSNFNDFIIWH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="117610" PGL_stop="117827"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117610" e_stop="117827"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="117610" e_stop="117827" e_length="218"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117610" stop="117827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340801" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCTCGCTCTGCTTCTTGCCCAATTCCTCAAGATAATCTGTCAGCCATATCATCTCTTTCCCAACTTCAGCTATTGCCACATACTCAGCTTCAGTAGATGAAAGAGAAACACACTTCTGAAGCCTGGACATCCAACTCACTGTTGTTCCACCTATGGTGTAAATGTACCCGGATGTACTCTTGCTCGATTCAACATCCCCACCAAGATCAGCATCC</gDNA_template>
            <first_frame> S  S  R  S  A  S  C  P  I  P  Q  D  N  L  S  A  I  S  S  L  S  Q  L  Q  L  L  P  H  T  Q  L  Q  *  M  K  E  K  H  T  S  E  A  W  T  S  N  S  L  L  F  H  L  W  C  K  C  T  R  M  Y  S  C  S  I  Q  H  P  H  Q  D  Q  H   </first_frame>
            <second_frame>  L  L  A  L  L  L  A  Q  F  L  K  I  I  C  Q  P  Y  H  L  F  P  N  F  S  Y  C  H  I  L  S  F  S  R  *  K  R  N  T  L  L  K  P  G  H  P  T  H  C  C  S  T  Y  G  V  N  V  P  G  C  T  L  A  R  F  N  I  P  T  K  I  S  I  </second_frame>
            <third_frame>   F  S  L  C  F  L  P  N  S  S  R  *  S  V  S  H  I  I  S  F  P  T  S  A  I  A  T  Y  S  A  S  V  D  E  R  E  T  H  F  *  S  L  D  I  Q  L  T  V  V  P  P  M  V  *  M  Y  P  D  V  L  L  L  D  S  T  S  P  P  R  S  A  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0025K09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 28 chains have been computed
$ 
$ memory statistics:
$ 25424 bytes spliced alignments in total
$ 12 spliced alignments have been stored
$ 2118 bytes was the average size of a spliced alignment
$ 14904 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1863 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 36 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-06 12:01:49
-->
