<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 07:47:38"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0028J09-yQP2I/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-Um6yO6/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Um6yO6/sgn_marker_seqs" ref_id="SGN-M3990" ref_strand="+" ref_description="SGN-M3990 cTOA-13-K15 [est_clones]">
      <seq>tcaaaactcacaatttcgccaaccactcattttatttcttcataaaaaccctaaaaacacaatcgaaccccaaaaattggtgttgaaaggaagagtaacgatttggttttgaattcaagttcaaattcagagcatggggtgaagaagattagaagaagaagatatacaggtgacgaatttcgtgatggagtgggatagcaattcggatttgagtggagaagaagaagatggcgttattgaagaagaagaagttgaggatgaattagaggaactagggtttatgttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0028J09-yQP2I/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0028J09.2" temp_strand="+" temp_description="C07HBa0028J09.2  AC212609.2 htgs_phase:2 submitted_to_sgn_as:gi|167832396|gb|AC212609.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0028J09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="70518" stop="71406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70818" g_stop="71106" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0028J09.2" gen_strand="+" ref_id="SGN-M3990" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0028J09.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M3990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70818" e_stop="71106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACTCACAATTTCGCCAACCACTCATTTTATTTCTTCATAAAAACCCTAAAAACACAATCGAACCCCAAAAATTGGTGTTGAAAGGAAGAGTAACGATTTGGTTTTGAATTCAAGTTCAAATTCAGAGCATGGGGTGAAGAAGATTAGAAGAAGAAGATATACAGGTGACGAATTTCGTGATGGAGTGGGATAGCAATTCGGATTTGAGTGGAGAAGAAGAAGATGGCGTTATTGAAGAAGAAGAAGTTGAGGATGAATTAGAGGAACTAGGGTTTATGTTGAGT</genome_strand>
        <mrna_strand>TCAAAACTCACAATTTCGCCAACCACTCATTTTATTTCTTCATAAAAACCCTAAAAACACAATCGAACCCCAAAAATTGGTGTTGAAAGGAAGAGTAACGATTTGGTTTTGAATTCAAGTTCAAATTCAGAGCATGGGGTGAAGAAGATTAGAAGAAGAAGATATACAGGTGACGAATTTCGTGATGGAGTGGGATAGCAATTCGGATTTGAGTGGAGAAGAAGAAGATGGCGTTATTGAAGAAGAAGAAGTTGAGGATGAATTAGAGGAACTAGGGTTTATGTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Um6yO6/sgn_marker_seqs" ref_id="SGN-M7232" ref_strand="+" ref_description="SGN-M7232 C2_At2g18940 [cosii_markers]">
      <seq>tggatacaggccagatttggtcatatttaactccatgctttccatatttgcaaggaacaagctatatgaccgtgctcatgaggtgctgcatttaattagggagaatggtctgcagccagatcttgttacatataatagtttaatggatatgtatgctagagccggtgaatgttggaaagctgaggaaatccttaatcgactgcagaagaatggaggaaagccagaccttgtatcatataacactgtcatcaaagcgttctgcagacaaggtcgtatggaggaggccatacgagttttctcccagatgacagaaaaaggaatccgaccttgcattgttacatataatacatttatggctggatttgcagctcgaggaatgttctctgaggtaaatgaattgatcagttatatgatccagcacaagtgcagaccaaatgagctaacatacaagactattgttgatggttattgtaaagcaaaaagataccaagatgcaatggattttgtgttgaatattaaagaaaaagataacacctttgatgaggaatctttgcaacgatttgcttctcgagttagggaaaatatggaatcatgacttagtaattccatgggatgtccactctttgataaactgacgtccaagttgactaggagagagagacgaagttcctcgacttgttattttgcttctatgaaattgtagattccattcacatccttagttttaacttgctttgaagagacttcacactgcgcgatgaacaaaagaacaacattttgactgttccttaatgggaccggctttgtgtatctgagttactgcactacaccaagttcttagtacttttggactttgcaagatgagtttataaattcagaaaatgaatgttacaggttccttttgtattattagtagtttgatattaatatataagtttcatttcattgctaaaaaaaaaaaaaaaaaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0028J09-yQP2I/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0028J09.2" temp_strand="-" temp_description="C07HBa0028J09.2  AC212609.2 htgs_phase:2 submitted_to_sgn_as:gi|167832396|gb|AC212609.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0028J09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="90930" stop="89372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90630" g_stop="89680" g_length="951"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="951" r_length="951" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="952" polyA_stop="976"/>
      <MATCH_line gen_id="C07HBa0028J09.2" gen_strand="-" ref_id="SGN-M7232" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>951</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0028J09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90630" e_stop="89680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATACAGGCCAGATTTGGTCATATTTAACTCCATGCTTTCCATATTTGCAAGGAACAAGCTATATGACCGTGCTCATGAGGTGCTGCATTTAATTAGGGAGAATGGTCTGCAGCCAGATCTTGTTACATATAATAGTTTAATGGATATGTATGCTAGAGCCGGTGAATGTTGGAAAGCTGAGGAAATCCTTAATCGACTGCAGAAGAATGGAGGAAAGCCAGACCTTGTATCATATAACACTGTCATCAAAGCGTTCTGCAGACAAGGTCGTATGGAGGAGGCCATACGAGTTTTCTCCCAGATGACAGAAAAAGGAATCCGACCTTGCATTGTTACATATAATACATTTATGGCTGGATTTGCAGCTCGAGGAATGTTCTCTGAGGTAAATGAATTGATCAGTTATATGATCCAGCACAAGTGCAGACCAAATGAGCTAACATACAAGACTATTGTTGATGGTTATTGTAAAGCAAAAAGATACCAAGATGCAATGGATTTTGTGTTGAATATTAAAGAAAAAGATAACACCTTTGATGAGGAATCTTTGCAACGATTTGCTTCTCGAGTTAGGGAAAATATGGAATCATGACTTAGTAATTCCATGGGATGTCCACTCTTTGATAAACTGACGTCCAAGTTGACTAGGAGAGAGAGACGAAGTTCCTCGACTTGTTATTTTGCTTCTATGAAATTGTAGATTCCATTCACATCCTTAGTTTTAACTTGCTTTGAAGAGACTTCACACTGCGCGATGAACAAAAGAACAACATTTTGACTGTTCCTTAATGGGACCGGCTTTGTGTATCTGAGTTACTGCACTACACCAAGTTCTTAGTACTTTTGGACTTTGCAAGATGAGTTTATAAATTCAGAAAATGAATGTTACAGGTTCCTTTTGTATTATTAGTAGTTTGATATTAATATATAAGTTTCATTTCATTGCTC</genome_strand>
        <mrna_strand>TGGATACAGGCCAGATTTGGTCATATTTAACTCCATGCTTTCCATATTTGCAAGGAACAAGCTATATGACCGTGCTCATGAGGTGCTGCATTTAATTAGGGAGAATGGTCTGCAGCCAGATCTTGTTACATATAATAGTTTAATGGATATGTATGCTAGAGCCGGTGAATGTTGGAAAGCTGAGGAAATCCTTAATCGACTGCAGAAGAATGGAGGAAAGCCAGACCTTGTATCATATAACACTGTCATCAAAGCGTTCTGCAGACAAGGTCGTATGGAGGAGGCCATACGAGTTTTCTCCCAGATGACAGAAAAAGGAATCCGACCTTGCATTGTTACATATAATACATTTATGGCTGGATTTGCAGCTCGAGGAATGTTCTCTGAGGTAAATGAATTGATCAGTTATATGATCCAGCACAAGTGCAGACCAAATGAGCTAACATACAAGACTATTGTTGATGGTTATTGTAAAGCAAAAAGATACCAAGATGCAATGGATTTTGTGTTGAATATTAAAGAAAAAGATAACACCTTTGATGAGGAATCTTTGCAACGATTTGCTTCTCGAGTTAGGGAAAATATGGAATCATGACTTAGTAATTCCATGGGATGTCCACTCTTTGATAAACTGACGTCCAAGTTGACTAGGAGAGAGAGACGAAGTTCCTCGACTTGTTATTTTGCTTCTATGAAATTGTAGATTCCATTCACATCCTTAGTTTTAACTTGCTTTGAAGAGACTTCACACTGCGCGATGAACAAAAGAACAACATTTTGACTGTTCCTTAATGGGACCGGCTTTGTGTATCTGAGTTACTGCACTACACCAAGTTCTTAGTACTTTTGGACTTTGCAAGATGAGTTTATAAATTCAGAAAATGAATGTTACAGGTTCCTTTTGTATTATTAGTAGTTTGATATTAATATATAAGTTTCATTTCATTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-Um6yO6/sgn_marker_seqs" ref_id="SGN-M7232-2" ref_strand="+" ref_description="SGN-M7232-2 C2_At2g18940-2 [cosii_markers]">
      <seq>gtcacaacatacaatgcgcttcttaatgcccttgctcgtcgaggtgattggagagcagctgaatctgttttctcagacatgaaaagtaagggctttaagcccagtgaaactacttactctttgatgctccactgctattccaagggagggaacgtgagaggtgtggagagaatcgcaaaggaaatttatgatggtcatatttttcctagttggatgcttttgagaaccctcattcttgcaaatttcaagtgtagatctctcatgggtatggagagagcatttcaggaattacagaaaaatggatacaggccagatttggtcatatttaactccatgctttccatatttgcaaggaacaagctatatgaccgtgctcacgaggtgctgcatttaattagggagaatggtcagcagccagatcttgttacatataatagtttaatggacatgtatgctagagccggtgaatgttggaaagctgaggaaatccttaatcgactgcagaagaatggaggaaatccagaccttgtatcatataacactgtcatcaaagcgttctgcagacaaggtcgtatggaggacgccatacgaattttctcccagatgacagaaaaaggaatccgaccttgcattgttacatataatacatttatcgctggatttgcagctcgaggaatgttctctgaggtaaatgaattgatcagttatatgatccagcacgagtgcagaccaaatgagctaacataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0028J09-yQP2I/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0028J09.2" temp_strand="-" temp_description="C07HBa0028J09.2  AC212609.2 htgs_phase:2 submitted_to_sgn_as:gi|167832396|gb|AC212609.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0028J09, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="91229" stop="89882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90929" g_stop="90182" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="748" r_length="748" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0028J09.2" gen_strand="-" ref_id="SGN-M7232-2" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0028J09.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7232-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90929" e_stop="90182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACAACATACAATGCGCTTCTTAATGCCCTTGCTCGTCGAGGTGATTGGAGAGCAGCTGAATCTGTTTTCTCAGACATGAAAAGTAAGGGCTTTAAGCCCAGTGAAACTACTTACTCTTTGATGCTCCACTGCTATTCCAAGGGAGGGAACGTGAGAGGTGTGGAGAGAATCGCAAAGGAAATTTATGATGGTCATATTTTTCCTAGTTGGATGCTTTTGAGAACCCTCATTCTTGCAAATTTCAAGTGTAGATCTCTCATGGGTATGGAGAGAGCATTTCAGGAACTACAGAAAAATGGATACAGGCCAGATTTGGTCATATTTAACTCCATGCTTTCCATATTTGCAAGGAACAAGCTATATGACCGTGCTCATGAGGTGCTGCATTTAATTAGGGAGAATGGTCTGCAGCCAGATCTTGTTACATATAATAGTTTAATGGATATGTATGCTAGAGCCGGTGAATGTTGGAAAGCTGAGGAAATCCTTAATCGACTGCAGAAGAATGGAGGAAAGCCAGACCTTGTATCATATAACACTGTCATCAAAGCGTTCTGCAGACAAGGTCGTATGGAGGAGGCCATACGAGTTTTCTCCCAGATGACAGAAAAAGGAATCCGACCTTGCATTGTTACATATAATACATTTATGGCTGGATTTGCAGCTCGAGGAATGTTCTCTGAGGTAAATGAATTGATCAGTTATATGATCCAGCACAAGTGCAGACCAAATGAGCTAACATACA</genome_strand>
        <mrna_strand>GTCACAACATACAATGCGCTTCTTAATGCCCTTGCTCGTCGAGGTGATTGGAGAGCAGCTGAATCTGTTTTCTCAGACATGAAAAGTAAGGGCTTTAAGCCCAGTGAAACTACTTACTCTTTGATGCTCCACTGCTATTCCAAGGGAGGGAACGTGAGAGGTGTGGAGAGAATCGCAAAGGAAATTTATGATGGTCATATTTTTCCTAGTTGGATGCTTTTGAGAACCCTCATTCTTGCAAATTTCAAGTGTAGATCTCTCATGGGTATGGAGAGAGCATTTCAGGAATTACAGAAAAATGGATACAGGCCAGATTTGGTCATATTTAACTCCATGCTTTCCATATTTGCAAGGAACAAGCTATATGACCGTGCTCACGAGGTGCTGCATTTAATTAGGGAGAATGGTCAGCAGCCAGATCTTGTTACATATAATAGTTTAATGGACATGTATGCTAGAGCCGGTGAATGTTGGAAAGCTGAGGAAATCCTTAATCGACTGCAGAAGAATGGAGGAAATCCAGACCTTGTATCATATAACACTGTCATCAAAGCGTTCTGCAGACAAGGTCGTATGGAGGACGCCATACGAATTTTCTCCCAGATGACAGAAAAAGGAATCCGACCTTGCATTGTTACATATAATACATTTATCGCTGGATTTGCAGCTCGAGGAATGTTCTCTGAGGTAAATGAATTGATCAGTTATATGATCCAGCACGAGTGCAGACCAAATGAGCTAACATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="70818" PGL_stop="71106"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70818" e_stop="71106"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70818" e_stop="71106" e_length="289"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70818" stop="71106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M3990" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAAACTCACAATTTCGCCAACCACTCATTTTATTTCTTCATAAAAACCCTAAAAACACAATCGAACCCCAAAAATTGGTGTTGAAAGGAAGAGTAACGATTTGGTTTTGAATTCAAGTTCAAATTCAGAGCATGGGGTGAAGAAGATTAGAAGAAGAAGATATACAGGTGACGAATTTCGTGATGGAGTGGGATAGCAATTCGGATTTGAGTGGAGAAGAAGAAGATGGCGTTATTGAAGAAGAAGAAGTTGAGGATGAATTAGAGGAACTAGGGTTTATGTTGAGT</gDNA_template>
            <first_frame> S  K  L  T  I  S  P  T  T  H  F  I  S  S  *  K  P  *  K  H  N  R  T  P  K  I  G  V  E  R  K  S  N  D  L  V  L  N  S  S  S  N  S  E  H  G  V  K  K  I  R  R  R  R  Y  T  G  D  E  F  R  D  G  V  G  *  Q  F  G  F  E  W  R  R  R  R  W  R  Y  *  R  R  R  S  *  G  *  I  R  G  T  R  V  Y  V  E  </first_frame>
            <second_frame>  Q  N  S  Q  F  R  Q  P  L  I  L  F  L  H  K  N  P  K  N  T  I  E  P  Q  K  L  V  L  K  G  R  V  T  I  W  F  *  I  Q  V  Q  I  Q  S  M  G  *  R  R  L  E  E  E  D  I  Q  V  T  N  F  V  M  E  W  D  S  N  S  D  L  S  G  E  E  E  D  G  V  I  E  E  E  E  V  E  D  E  L  E  E  L  G  F  M  L  S </second_frame>
            <third_frame>   K  T  H  N  F  A  N  H  S  F  Y  F  F  I  K  T  L  K  T  Q  S  N  P  K  N  W  C  *  K  E  E  *  R  F  G  F  E  F  K  F  K  F  R  A  W  G  E  E  D  *  K  K  K  I  Y  R  *  R  I  S  *  W  S  G  I  A  I  R  I  *  V  E  K  K  K  M  A  L  L  K  K  K  K  L  R  M  N  *  R  N  *  G  L  C  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0028J09.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="90929" PGL_stop="89680"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90929" e_stop="89680"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="90929" e_stop="89680" e_length="1250"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90929" stop="90182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7232-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90630" stop="89680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7232" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCACAACATACAATGCGCTTCTTAATGCCCTTGCTCGTCGAGGTGATTGGAGAGCAGCTGAATCTGTTTTCTCAGACATGAAAAGTAAGGGCTTTAAGCCCAGTGAAACTACTTACTCTTTGATGCTCCACTGCTATTCCAAGGGAGGGAACGTGAGAGGTGTGGAGAGAATCGCAAAGGAAATTTATGATGGTCATATTTTTCCTAGTTGGATGCTTTTGAGAACCCTCATTCTTGCAAATTTCAAGTGTAGATCTCTCATGGGTATGGAGAGAGCATTTCAGGAACTACAGAAAAATGGATACAGGCCAGATTTGGTCATATTTAACTCCATGCTTTCCATATTTGCAAGGAACAAGCTATATGACCGTGCTCATGAGGTGCTGCATTTAATTAGGGAGAATGGTCTGCAGCCAGATCTTGTTACATATAATAGTTTAATGGATATGTATGCTAGAGCCGGTGAATGTTGGAAAGCTGAGGAAATCCTTAATCGACTGCAGAAGAATGGAGGAAAGCCAGACCTTGTATCATATAACACTGTCATCAAAGCGTTCTGCAGACAAGGTCGTATGGAGGAGGCCATACGAGTTTTCTCCCAGATGACAGAAAAAGGAATCCGACCTTGCATTGTTACATATAATACATTTATGGCTGGATTTGCAGCTCGAGGAATGTTCTCTGAGGTAAATGAATTGATCAGTTATATGATCCAGCACAAGTGCAGACCAAATGAGCTAACATACAAGACTATTGTTGATGGTTATTGTAAAGCAAAAAGATACCAAGATGCAATGGATTTTGTGTTGAATATTAAAGAAAAAGATAACACCTTTGATGAGGAATCTTTGCAACGATTTGCTTCTCGAGTTAGGGAAAATATGGAATCATGACTTAGTAATTCCATGGGATGTCCACTCTTTGATAAACTGACGTCCAAGTTGACTAGGAGAGAGAGACGAAGTTCCTCGACTTGTTATTTTGCTTCTATGAAATTGTAGATTCCATTCACATCCTTAGTTTTAACTTGCTTTGAAGAGACTTCACACTGCGCGATGAACAAAAGAACAACATTTTGACTGTTCCTTAATGGGACCGGCTTTGTGTATCTGAGTTACTGCACTACACCAAGTTCTTAGTACTTTTGGACTTTGCAAGATGAGTTTATAAATTCAGAAAATGAATGTTACAGGTTCCTTTTGTATTATTAGTAGTTTGATATTAATATATAAGTTTCATTTCATTGCTC</gDNA_template>
            <first_frame> V  T  T  Y  N  A  L  L  N  A  L  A  R  R  G  D  W  R  A  A  E  S  V  F  S  D  M  K  S  K  G  F  K  P  S  E  T  T  Y  S  L  M  L  H  C  Y  S  K  G  G  N  V  R  G  V  E  R  I  A  K  E  I  Y  D  G  H  I  F  P  S  W  M  L  L  R  T  L  I  L  A  N  F  K  C  R  S  L  M  G  M  E  R  A  F  Q  E  L  Q  K  N  G  Y  R  P  D  L  V  I  F  N  S  M  L  S  I  F  A  R  N  K  L  Y  D  R  A  H  E  V  L  H  L  I  R  E  N  G  L  Q  P  D  L  V  T  Y  N  S  L  M  D  M  Y  A  R  A  G  E  C  W  K  A  E  E  I  L  N  R  L  Q  K  N  G  G  K  P  D  L  V  S  Y  N  T  V  I  K  A  F  C  R  Q  G  R  M  E  E  A  I  R  V  F  S  Q  M  T  E  K  G  I  R  P  C  I  V  T  Y  N  T  F  M  A  G  F  A  A  R  G  M  F  S  E  V  N  E  L  I  S  Y  M  I  Q  H  K  C  R  P  N  E  L  T  Y  K  T  I  V  D  G  Y  C  K  A  K  R  Y  Q  D  A  M  D  F  V  L  N  I  K  E  K  D  N  T  F  D  E  E  S  L  Q  R  F  A  S  R  V  R  E  N  M  E  S  *  L  S  N  S  M  G  C  P  L  F  D  K  L  T  S  K  L  T  R  R  E  R  R  S  S  S  T  C  Y  F  A  S  M  K  L  *  I  P  F  T  S  L  V  L  T  C  F  E  E  T  S  H  C  A  M  N  K  R  T  T  F  *  L  F  L  N  G  T  G  F  V  Y  L  S  Y  C  T  T  P  S  S  *  Y  F  W  T  L  Q  D  E  F  I  N  S  E  N  E  C  Y  R  F  L  L  Y  Y  *  *  F  D  I  N  I  *  V  S  F  H  C   </first_frame>
            <second_frame>  S  Q  H  T  M  R  F  L  M  P  L  L  V  E  V  I  G  E  Q  L  N  L  F  S  Q  T  *  K  V  R  A  L  S  P  V  K  L  L  T  L  *  C  S  T  A  I  P  R  E  G  T  *  E  V  W  R  E  S  Q  R  K  F  M  M  V  I  F  F  L  V  G  C  F  *  E  P  S  F  L  Q  I  S  S  V  D  L  S  W  V  W  R  E  H  F  R  N  Y  R  K  M  D  T  G  Q  I  W  S  Y  L  T  P  C  F  P  Y  L  Q  G  T  S  Y  M  T  V  L  M  R  C  C  I  *  L  G  R  M  V  C  S  Q  I  L  L  H  I  I  V  *  W  I  C  M  L  E  P  V  N  V  G  K  L  R  K  S  L  I  D  C  R  R  M  E  E  S  Q  T  L  Y  H  I  T  L  S  S  K  R  S  A  D  K  V  V  W  R  R  P  Y  E  F  S  P  R  *  Q  K  K  E  S  D  L  A  L  L  H  I  I  H  L  W  L  D  L  Q  L  E  E  C  S  L  R  *  M  N  *  S  V  I  *  S  S  T  S  A  D  Q  M  S  *  H  T  R  L  L  L  M  V  I  V  K  Q  K  D  T  K  M  Q  W  I  L  C  *  I  L  K  K  K  I  T  P  L  M  R  N  L  C  N  D  L  L  L  E  L  G  K  I  W  N  H  D  L  V  I  P  W  D  V  H  S  L  I  N  *  R  P  S  *  L  G  E  R  D  E  V  P  R  L  V  I  L  L  L  *  N  C  R  F  H  S  H  P  *  F  *  L  A  L  K  R  L  H  T  A  R  *  T  K  E  Q  H  F  D  C  S  L  M  G  P  A  L  C  I  *  V  T  A  L  H  Q  V  L  S  T  F  G  L  C  K  M  S  L  *  I  Q  K  M  N  V  T  G  S  F  C  I  I  S  S  L  I  L  I  Y  K  F  H  F  I  A  </second_frame>
            <third_frame>   H  N  I  Q  C  A  S  *  C  P  C  S  S  R  *  L  E  S  S  *  I  C  F  L  R  H  E  K  *  G  L  *  A  Q  *  N  Y  L  L  F  D  A  P  L  L  F  Q  G  R  E  R  E  R  C  G  E  N  R  K  G  N  L  *  W  S  Y  F  S  *  L  D  A  F  E  N  P  H  S  C  K  F  Q  V  *  I  S  H  G  Y  G  E  S  I  S  G  T  T  E  K  W  I  Q  A  R  F  G  H  I  *  L  H  A  F  H  I  C  K  E  Q  A  I  *  P  C  S  *  G  A  A  F  N  *  G  E  W  S  A  A  R  S  C  Y  I  *  *  F  N  G  Y  V  C  *  S  R  *  M  L  E  S  *  G  N  P  *  S  T  A  E  E  W  R  K  A  R  P  C  I  I  *  H  C  H  Q  S  V  L  Q  T  R  S  Y  G  G  G  H  T  S  F  L  P  D  D  R  K  R  N  P  T  L  H  C  Y  I  *  Y  I  Y  G  W  I  C  S  S  R  N  V  L  *  G  K  *  I  D  Q  L  Y  D  P  A  Q  V  Q  T  K  *  A  N  I  Q  D  Y  C  *  W  L  L  *  S  K  K  I  P  R  C  N  G  F  C  V  E  Y  *  R  K  R  *  H  L  *  *  G  I  F  A  T  I  C  F  S  S  *  G  K  Y  G  I  M  T  *  *  F  H  G  M  S  T  L  *  *  T  D  V  Q  V  D  *  E  R  E  T  K  F  L  D  L  L  F  C  F  Y  E  I  V  D  S  I  H  I  L  S  F  N  L  L  *  R  D  F  T  L  R  D  E  Q  K  N  N  I  L  T  V  P  *  W  D  R  L  C  V  S  E  L  L  H  Y  T  K  F  L  V  L  L  D  F  A  R  *  V  Y  K  F  R  K  *  M  L  Q  V  P  F  V  L  L  V  V  *  Y  *  Y  I  S  F  I  S  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0028J09.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90929" stop="90036"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTTYNALLNALARRGDWRAAESVFSDMKSKGFKPSETTYSLMLHCYSKGGNVRGVERIAKEIYDGHIFPSWMLLRTLILANFKCRSLMGMERAFQELQKNGYRPDLVIFNSMLSIFARNKLYDRAHEVLHLIRENGLQPDLVTYNSLMDMYARAGECWKAEEILNRLQKNGGKPDLVSYNTVIKAFCRQGRMEEAIRVFSQMTEKGIRPCIVTYNTFMAGFAARGMFSEVNELISYMIQHKCRPNELTYKTIVDGYCKAKRYQDAMDFVLNIKEKDNTFDEESLQRFASRVRENMES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 10 chains have been computed
$ 
$ memory statistics:
$ 5608 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 1869 bytes was the average size of a spliced alignment
$ 6704 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3352 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 10 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 07:47:42
-->
