<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-09 02:38:36"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/wt8cILNx5A" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E229109" ref_strand="+" ref_description="SGN-E229109 [cLEL-29-P14](-)">
      <seq>taagtataattgtaaattatattgatggttgacactttgaggtagaagagaacaccacacaaggaaacaatttatttacttttttttaaaaatgcattatttcatacacaagtacaataggaagtatttcataactaatgtcttgcacaaattcagtatacaatttgatggaatactcataaatgaaaaaaaatattaaatttcctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="+" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="243" stop="1049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="543" g_stop="748" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="207" polyA_stop="226"/>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="+" ref_id="SGN-E229109" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>206</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="543" e_stop="748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTATAATTGTAAATTATATTGATGGTTGACACTTTGAGGTAGAAGAGAACACCACACAAGGAAACAATTTATTTACTTTTTTTTAAAAATGCATTATTTCATACACAAGTACAATAGGAAGTATTTCATAACTAATGTCTTGCACAAATTCAGTATACAATTTGATGGAATACTCATAAATGAAAAAAAATATTAAATTTCCT</genome_strand>
        <mrna_strand>TAAGTATAATTGTAAATTATATTGATGGTTGACACTTTGAGGTAGAAGAGAACACCACACAAGGAAACAATTTATTTACTTTTTTTTAAAAATGCATTATTTCATACACAAGTACAATAGGAAGTATTTCATAACTAATGTCTTGCACAAATTCAGTATACAATTTGATGGAATACTCATAAATGAAAAAAAATATTAAATTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E353382" ref_strand="+" ref_description="SGN-E353382 [cTOS-15-D11]">
      <seq>cgcaaatgaaagatccgatgattttgaggtcggaaatgtggccaagaatattggtgatcatatctacaaatatttccctcaagctgctttacttctgatggataacaagaagcttgaagctttactgaaggagggcaaagacaggagtcctgttatgcagctttacactaaggaatcatctaggagctggaaactagcgggagctgatgcaagcggctctctgaaaatcaaagaaccatctgcaaatattgttcttctagactatgtctcatcagggaaatggaaggacatcgtggatttcgatgaccatctggatgacattagcaaggactggctgaatccagaactcttcaagtgagatgtctacagagaggatgacacaattatcctgttgttaccgcgtgtgatatttggtgtttatccctcccgcgtagttgctgagtttatgaagaaacaatctaatgactctgaatttgcagactgttgaagattaccaattacctaatggcttttgaatattgttagaagatagggttcatatcattgcataattacgcgtttctaataggtcaaacatgaattttttgagcaacacaactcaattttgtactgaatggggaaccatgagtttttatttttaaactaaattattttgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="20764" stop="14767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20464" g_stop="20368" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20264" g_stop="20202" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="160" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20201" i_stop="15668" i_length="4534">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15667" g_stop="15501" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="327" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15500" i_stop="15397" i_length="104">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15396" g_stop="15066" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="658" r_length="331" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E353382" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20464" e_stop="20368"/>
          <exon e_start="20264" e_stop="20202"/>
          <exon e_start="15667" e_stop="15501"/>
          <exon e_start="15396" e_stop="15066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTGGTACCCTTTTTTCTTACTCAACATAGTTCTAATTCAAAATGTTCCAATCTTTAAATTGTAAGTTAACAAAGTGCTTGAGCTTAATTTGCCTTGTATTTTACAGATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAGGTATGCACATATCATTTTAATGAGCTATTGGCTTTTGAACTAAATTCAGTCTTTTTATTCTTCTTCATATTTTTATCCGGTCTAGTTAATTATTGATGCCAAATTCCAGTAATTATGCCATTCAAATTTGAACTTTTGGTGCATTAAGCATTAGTGACTACGTGACCAACTTCATATATATAGTTTATTCTTCCTTGATAATCATTCTAGCTGTCTTATGGTTTCTCTTCTCTATCTGTCCCATTTTTCACGTGGTGATGAAGTTAGTTGGAATAATGTGGTTACTTTAGTTCTTTTGTTTCTATTTAATGCGGAAGGTTATTAGTTCTTTCCATTTACTAGAGAACTTCGTGTTGTTATTTGACGACATAGAACTCTGTCCTTTTGTTTTGATAATTATGGGAGTCCAGGAAATCAAGTTCACATCTAAGTCTGTATGTCCACAATAATCTTAATGTTCTATTTCTGCTGGGTGAACAAATGAAAATCCTTGTTTTATATTCTATCTGCGTTGTTTCTAATTAATCCAGTTGGCACGAAGGAAAAGCAGTTGATAATCCTACTTCTCTGTGCAAAGGGTAATGAACTACTATGCAATGGCTAATGGGTATGACTTGAGGATTGTAAAAACTGATCCCACTAGGACTTGGTATATTTGTGAACTTGGAATGTCCTTTTAGATGTCCTATCTCACAGGATAAAATGAGTGTTGGGTTGAGTAACAAAACTTTGAAATCAGAACATAATTGTGATCCTTGTTACAAAAACCCAAGAGAACTCATTAGCACAATACTTGAAGAAAGAATAACTCCCTCTGTCCCAATTTAAGTGTCTTAGTTTAATTGTCCACAAAGTTTATGAAATAAAGAAATGTTTGAATCTTGTTGTCTTGAATTAAAGATGTGTGTAGTCCTTTAAATCTTGTGTTCTTAAATTTGCCTAGAAGAATGTTGGAACTGAAAAATATACTAAAGATAGAAAGAGACACTCTTTTTGGGACAGTCCAAAAATGAAAGACACTTAAAAAATCAGGATGGAGGGAGTACAAAACAATTCCAAGTACACTGTTAAGGAGCTTCAAGGATAATTATTATAATCTTGAAATATATTTAAAGGGCCATCCAAGTCATAAATATCGATTTTTTTCCGTCCTCAAGCCATACTTATTAGCCATTGCATAGTAGTTCATTATCCTTCTACCTTCCACAATATCAGAAAATGTCATATCCTTCTTCAACTCCCTTATAATTGTCCAGCCTACTAATAACCTCGATTTCTTCATCATACTCCAAATTGGCAAATCAAAAAATTATAGTCCTCAATAACATGATCATTATCAGATGCTACCTCAACGTCTACATGATATGTTTCGATATGATGCAAAATTATATGTTTATGGATGATCAAATTTGTCTCATCTGCAGCAAACAAGTGTATAACTCCCAACTCATGGCGAATAAGGTTCTGCAAAGCCCTAAAATACCATCATCTCCATCAATAATATAGTCCCTACTCGGGTCTGGCAACTAACAATTGTTTGACCTTAATAAACCTTAGCTCTTTCTTGAACTCTTCCACAAAAATCTTTATAAGAAAGCAGGTTTTTGGTCAAACCTATGACAGAAGTGCGCCAGTTTCTTACTATTGAATAAGTGAGGAGAAAAGACTCATTCACCCCATAGTGGAAACACACTTTCTCTTTGTCAATCATGCTTCGGTAAAGATCACATGCCAAGGAAAAAATGAGGGACCACATCAGCAACATACATAGGCTATACAAAATCTGTGAATATAAAAACTCTAGAATGACACAACACATTTTGGGACCATAAAAGAAAGGAACAGAACCATAAAAACACTGAAACTTTACATATTAAGCTATGATTTACATACTCAAAAATAAGAAACTCCACATTAACAGATTCTCTACCCACCACCTTAAATAATTATTTAAATAGAGAACCAGCCTTTATGAGCTATTCCTTTTGTCCTTCTCCCTCATAAACAAGCTATGAAGTCAACTTTGGCCATAGTTTTTTTCCCGATCAATTACCAAAAGAACTGAGTTAAGGCTTAAGGATTTGGGTCTGGTCGAGTAAGGGAATTGAGGAGAATGGATTATGGGTTTGGGCAAAAAGAGTCTGGGTCGGGTTCTAATATGGAGCGGTTAAAGCTAATTGGCATGGGTATTAAATAAGTGGGACATGTTAGTGATGTGACCTGTTTAATTTGATGTTATTGTCCAATTCAGTATTTTTAAACCAAAAATTGGTATTCAAACTGGCTATTTGAGCTGTTAGTGGTATGTGGCATGAATGTGCAAATTGTGTCATGGCAATGACAAAAATATGCACAACTAGTAATGAGTGGCACAGCAGAGCCATTTCTGATAGTTCAATGGTATATTTTTTCTTTTCTTCTTTTATTAAAAGACATGGGCAATCTCGTCATTTAGGTGGATTTAGTGGTCATGCTAATATGCGGAGTGGTAACCAAGGTAGGTCTCGTAAATCCTATTGGGCCTCAGTTTTGATTAAGAAATCAAATGCTGGGATTGCAAGCAAGTAGGTCACAAGAAAGCTGCTTGTCCCTGAACAAGAAACCAGGTGACCATTTTTATGAACCGAACCATAGCACTACCATCAAGGGCTTAACATGATTGGCCCGATGGTATCAAATCCCTATTTATGGATGTATTCTACACAAATCATTTTTCCATATAGGACACTAAATGCGTTACATTCTTGAATAGTTGAAACTCTTTCTTAGGACTGTTGTTAAGGTCTCGAAGGCAATTTCATTTGATAAAAAATTGGATATTCTTTTTGTATTTCCATCGAAGATGGGTTCATTTCTATAATACCATTGTTGAGGAGAACAACTTGTTCTTGAAATCATCATGGCTAAAAGATGAACATAATAATGGGTTCGAGAAAGAAGGAAAGTTGAGAACCCATCTGAGGTGGAAAAATTGTGGGCAAGTAAAATGAATAAAGTGAACTCATTTAGTTCAATGATGGGTTTGATGACTTTGTCCCAATTTTTTTTAATCTTGTTTGTTGGACTATATTCCCGTTGTGTTTATGAAATGGGTTTGTCATCCAATGTTACTTGGTCGAGTCTAAAGGAATTACAAGCATATAATGGTAGTCGATGTGAAGGAAAATACTGTAATTGACCTAAGCCAGTCAAAACATTTCCTACAAAAATTTTGATTGATGAGTTAGCTTTTGTTTAAATAACTCAGTTGTGTTTCTGATAATTGCTTTTGAGTATTGGTGTTAAAAAGGGGAAAAGAAAAAAGAATGAGATGTGGCAATCATTGAAGATGTGAAGGCGACCATAGCAGGTCGGAGAGGATGAGAAACAAAAGGAATTAATATGAGTTATATCAACCAAAAATTATGTTTTCATGCACTTAAAATTTAGGTGCATGACACCTATCATGTTGGTGATAGGCGTGCACGAGATATAATTTTGTCAAGTGAAAGTGTTCAAATAATCATTATGAAAGTTAGTGGTGGTGTCTATCTGAAAATTGATGCCATGTTTGAGGTATCTCTAGATTTGCCCATGATATTTGTTGTTGGCTAATATAAAAAGAATTAGAAATCCCATTCCAACATCTTCAGGGGGGAAAACAATATCAGCATCCAAGTTTGAATTCGAAATGGACCTTATTTTCTCTGTTTTAATATGGGATGAAGATGAATCACCATGCTTACCTTGCAACAGAGGAGAAAGTTGCTCTAACTCAATCAGATGAAATCAAGTTATCAGTTGCTTTCATCTTCATGTGAAAAACGGAGAACTATCTGTTATGAGTACTTGGCTTCTTATGAAAAGAGTTCCAATAGACAGCTGGCCTGAGAATTTTGAACTTCAGATTCTTCTTGGGGTAGTTTTGGAATTCCTTATTAATAAAGCCTTGCTGGATAGTTATATTGTTTGCATAATCTAAATCAGGTTCTCTTTACCCCTTTACCAATATTTCCATCAGTTCATTTTTTCCTTTTTTTTTTTTGGTAATCATGGTGTTTGCTTCAGTTTGTGCACACGTTGACTAATTCACGGGGCACATACTATCTTTCACCAGCACAAGTATCAGGACCAAGGCTTGGATAGATGGGAAGAAAGCGCCTAGGACTTTTATGTCCACTGTCATTTCGACCACATCATTGACCATTAGGCCCACACCCTTGCATACATATTACCGGTAGTGCTATATGTGGTTATTTTGAAATCCGTTGGATAACAATTTGTGATACTTAAATTGTCAATGTCGCTAATCTCTGTATTAGTTTGGTTCTCCTTTTATAATTTTGTTACATATTGCACTACAAGCTGATTCAGAGGTCCAGGTTCTGCTTGACTTTAAAGCTTGTTCTTGGCAATTATTTGTGTTTTCGTAATTTAGTCTTGTACAAAAATAGTTGTCTTGCTGGTATATGACTCTGATTTTATAGTTGTGTTCTTTAACAAGTTCATGTCAATATAGCAGTTTCCTTTACTTCAGCTCTTTTTCTTTATTCAGCTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAAGTAATAGCTACATACAATTATCTGCTTTAGCTCTGCTTTACATCCACATTGTTTTCTATAATTTACTTATGATTTCTTCTTCTCTTGCTAATTCATTTTGGTAGGGACTGGCTGAATCCAGAACTCTTCAAGTGAGATGTCTACAGAGAGGATGACACAATTATCCTGTTGTTACCGCGTGTGATATTTGGTGTTTATCCCTCCCGCGTAGTTGCTGAGTTTATGAAGAAACAATCTAATGACTCTGAATTTGCAGACTGTTGAAGATTACCAATTACCTAATGGCTTTTGAATATTGTTAGAAGATAGGGTTCATATCATTGCATAATTACGCGTTTCTAATAGGTCAAACATGAATTTTTTGAGCAACACAACTCAATTTTGTACTGAATGGGGAACCATGAGTTTTTATTTTTAAACTAAATTATTTTGCAT</genome_strand>
        <mrna_strand>CGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG.......................................................................................................ATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAA........................................................................................................GGACTGGCTGAATCCAGAACTCTTCAAGTGAGATGTCTACAGAGAGGATGACACAATTATCCTGTTGTTACCGCGTGTGATATTTGGTGTTTATCCCTCCCGCGTAGTTGCTGAGTTTATGAAGAAACAATCTAATGACTCTGAATTTGCAGACTGTTGAAGATTACCAATTACCTAATGGCTTTTGAATATTGTTAGAAGATAGGGTTCATATCATTGCATAATTACGCGTTTCTAATAGGTCAAACATGAATTTTTTGAGCAACACAACTCAATTTTGTACTGAATGGGGAACCATGAGTTTTTATTTTTAAACTAAATTATTTTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E230345" ref_strand="+" ref_description="SGN-E230345 [cLEL-33-M22](-)">
      <seq>tctgaaaatcaaagaaccatctgcaaatattgttcttctagactatgtctcatcagggaaatggaaggacatcgtggatttcgatgaccatctggatgacattagcaaggactggctgaatccagaactcttcaagtgagatgtctacagagaggatgacacaattatcctgttgttaccgcgtgtgatatttggtgtttatccctcccgcgtagttgctgagtttatgaagaaacaatctaatgactctgaatttgcagactgttgaagattaccaattacctaatggcttttgaatattgttagaagatagggttcatatcattgcataattacgcgtttctaataggtcaaacatgaattttttgagcaacacaactcaattttgtactgaatggggaaccatgagtttttatttttaaactaaattattttgcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="15908" stop="14767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15608" g_stop="15501" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15500" i_stop="15397" i_length="104">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15396" g_stop="15068" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="437" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="438" polyA_stop="453"/>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E230345" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15608" e_stop="15501"/>
          <exon e_start="15396" e_stop="15068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAAGTAATAGCTACATACAATTATCTGCTTTAGCTCTGCTTTACATCCACATTGTTTTCTATAATTTACTTATGATTTCTTCTTCTCTTGCTAATTCATTTTGGTAGGGACTGGCTGAATCCAGAACTCTTCAAGTGAGATGTCTACAGAGAGGATGACACAATTATCCTGTTGTTACCGCGTGTGATATTTGGTGTTTATCCCTCCCGCGTAGTTGCTGAGTTTATGAAGAAACAATCTAATGACTCTGAATTTGCAGACTGTTGAAGATTACCAATTACCTAATGGCTTTTGAATATTGTTAGAAGATAGGGTTCATATCATTGCATAATTACGCGTTTCTAATAGGTCAAACATGAATTTTTTGAGCAACACAACTCAATTTTGTACTGAATGGGGAACCATGAGTTTTTATTTTTAAACTAAATTATTTTGC</genome_strand>
        <mrna_strand>TCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAA........................................................................................................GGACTGGCTGAATCCAGAACTCTTCAAGTGAGATGTCTACAGAGAGGATGACACAATTATCCTGTTGTTACCGCGTGTGATATTTGGTGTTTATCCCTCCCGCGTAGTTGCTGAGTTTATGAAGAAACAATCTAATGACTCTGAATTTGCAGACTGTTGAAGATTACCAATTACCTAATGGCTTTTGAATATTGTTAGAAGATAGGGTTCATATCATTGCATAATTACGCGTTTCTAATAGGTCAAACATGAATTTTTTGAGCAACACAACTCAATTTTGTACTGAATGGGGAACCATGAGTTTTTATTTTTAAACTAAATTATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E612563" ref_strand="-" ref_description="SGN-E612563 [62327]">
      <seq>tccgttccgttgttccattctcagattggtttacttccaccactcgaaatgtcacttatcatgattgaggagtactatgctgataaaggtttgagtattgtggtttattttcacgcaaatgaaagatctgatgattttgaggtcggaaatgtggccaagaatattggtgatcatatctacaaatatttccctcaagctgctttacttctgttggataacaagaagcttgaagctttactgaaggagggcaaagacaggagtcctgttatgcagctttacactaaggaatcatctaggagctggaaactagcgggaactgatgcaagcggctctctgaaaatcaaagaaccatctgcaaatattgttcttctagactatgtctcatctgggaaatggaaggacatcgtggatttcgatgaccatctggatgacattagcaaggactggctgaatccagaactcttcaagtgaaatgtctacggaggatgacacaattatcatgttgttaccgcgtgtggtatttggtgtatatccctcgcgcgtagttgctgagtttgtttatggagaaaagaatctaatggctttggaatattattagaagatagggttcatatcgttgcaaaattatgcgtttctaataggtcaaacattttttgagcaacacaacttaattttgtactgaatggaaccataagtttttatttagaactaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21207" stop="14807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20907" g_stop="20845" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330">
            <donor d_prob="0.925" d_score="0.96"/>
            <acceptor a_prob="0.471" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20514" g_stop="20368" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="210" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20264" g_stop="20202" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="273" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20201" i_stop="15668" i_length="4534">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15667" g_stop="15501" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="440" r_length="167" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15500" i_stop="15397" i_length="104">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15396" g_stop="15249" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="593" r_length="153" r_score="0.831"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15248" i_stop="15199" i_length="50">
            <donor d_prob="0.000" d_score="0.58"/>
            <acceptor a_prob="0.000" a_score="0.71"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15198" g_stop="15077" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="713" r_length="120" r_score="0.803"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E612563" ref_strand="-">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612563" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20907" e_stop="20845"/>
          <exon e_start="20514" e_stop="20368"/>
          <exon e_start="20264" e_stop="20202"/>
          <exon e_start="15667" e_stop="15501"/>
          <exon e_start="15396" e_stop="15249"/>
          <exon e_start="15198" e_stop="15077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATGGTCAGTTCCCCTCCCTTTGAATTAAAGTGGATTTTAGTAGCGCAATTGAAGTATACTAATTGTTTTGATAATGAAATTGAGCATTAGGTTTGTATTTTGTAGTAACTGAAGTACACTTATAATGAAATTGAAGTACACTAATTGCTCGGGCTGGGCTCAGCTTGATGCCCAGGCCTAATTACAGGTTAATACTTGTAGATGTGGGTTCGTATCCACTATATCTGTAGGATAATAGATTTGAACTGAGTATAAAGGGATGTTTTGGAGAATTTTCAACTAAATATGTACCATGCCTTCTAACTTGTTTGGAAGTCTCTTTTATTTGGATAGATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTGGTACCCTTTTTTCTTACTCAACATAGTTCTAATTCAAAATGTTCCAATCTTTAAATTGTAAGTTAACAAAGTGCTTGAGCTTAATTTGCCTTGTATTTTACAGATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAGGTATGCACATATCATTTTAATGAGCTATTGGCTTTTGAACTAAATTCAGTCTTTTTATTCTTCTTCATATTTTTATCCGGTCTAGTTAATTATTGATGCCAAATTCCAGTAATTATGCCATTCAAATTTGAACTTTTGGTGCATTAAGCATTAGTGACTACGTGACCAACTTCATATATATAGTTTATTCTTCCTTGATAATCATTCTAGCTGTCTTATGGTTTCTCTTCTCTATCTGTCCCATTTTTCACGTGGTGATGAAGTTAGTTGGAATAATGTGGTTACTTTAGTTCTTTTGTTTCTATTTAATGCGGAAGGTTATTAGTTCTTTCCATTTACTAGAGAACTTCGTGTTGTTATTTGACGACATAGAACTCTGTCCTTTTGTTTTGATAATTATGGGAGTCCAGGAAATCAAGTTCACATCTAAGTCTGTATGTCCACAATAATCTTAATGTTCTATTTCTGCTGGGTGAACAAATGAAAATCCTTGTTTTATATTCTATCTGCGTTGTTTCTAATTAATCCAGTTGGCACGAAGGAAAAGCAGTTGATAATCCTACTTCTCTGTGCAAAGGGTAATGAACTACTATGCAATGGCTAATGGGTATGACTTGAGGATTGTAAAAACTGATCCCACTAGGACTTGGTATATTTGTGAACTTGGAATGTCCTTTTAGATGTCCTATCTCACAGGATAAAATGAGTGTTGGGTTGAGTAACAAAACTTTGAAATCAGAACATAATTGTGATCCTTGTTACAAAAACCCAAGAGAACTCATTAGCACAATACTTGAAGAAAGAATAACTCCCTCTGTCCCAATTTAAGTGTCTTAGTTTAATTGTCCACAAAGTTTATGAAATAAAGAAATGTTTGAATCTTGTTGTCTTGAATTAAAGATGTGTGTAGTCCTTTAAATCTTGTGTTCTTAAATTTGCCTAGAAGAATGTTGGAACTGAAAAATATACTAAAGATAGAAAGAGACACTCTTTTTGGGACAGTCCAAAAATGAAAGACACTTAAAAAATCAGGATGGAGGGAGTACAAAACAATTCCAAGTACACTGTTAAGGAGCTTCAAGGATAATTATTATAATCTTGAAATATATTTAAAGGGCCATCCAAGTCATAAATATCGATTTTTTTCCGTCCTCAAGCCATACTTATTAGCCATTGCATAGTAGTTCATTATCCTTCTACCTTCCACAATATCAGAAAATGTCATATCCTTCTTCAACTCCCTTATAATTGTCCAGCCTACTAATAACCTCGATTTCTTCATCATACTCCAAATTGGCAAATCAAAAAATTATAGTCCTCAATAACATGATCATTATCAGATGCTACCTCAACGTCTACATGATATGTTTCGATATGATGCAAAATTATATGTTTATGGATGATCAAATTTGTCTCATCTGCAGCAAACAAGTGTATAACTCCCAACTCATGGCGAATAAGGTTCTGCAAAGCCCTAAAATACCATCATCTCCATCAATAATATAGTCCCTACTCGGGTCTGGCAACTAACAATTGTTTGACCTTAATAAACCTTAGCTCTTTCTTGAACTCTTCCACAAAAATCTTTATAAGAAAGCAGGTTTTTGGTCAAACCTATGACAGAAGTGCGCCAGTTTCTTACTATTGAATAAGTGAGGAGAAAAGACTCATTCACCCCATAGTGGAAACACACTTTCTCTTTGTCAATCATGCTTCGGTAAAGATCACATGCCAAGGAAAAAATGAGGGACCACATCAGCAACATACATAGGCTATACAAAATCTGTGAATATAAAAACTCTAGAATGACACAACACATTTTGGGACCATAAAAGAAAGGAACAGAACCATAAAAACACTGAAACTTTACATATTAAGCTATGATTTACATACTCAAAAATAAGAAACTCCACATTAACAGATTCTCTACCCACCACCTTAAATAATTATTTAAATAGAGAACCAGCCTTTATGAGCTATTCCTTTTGTCCTTCTCCCTCATAAACAAGCTATGAAGTCAACTTTGGCCATAGTTTTTTTCCCGATCAATTACCAAAAGAACTGAGTTAAGGCTTAAGGATTTGGGTCTGGTCGAGTAAGGGAATTGAGGAGAATGGATTATGGGTTTGGGCAAAAAGAGTCTGGGTCGGGTTCTAATATGGAGCGGTTAAAGCTAATTGGCATGGGTATTAAATAAGTGGGACATGTTAGTGATGTGACCTGTTTAATTTGATGTTATTGTCCAATTCAGTATTTTTAAACCAAAAATTGGTATTCAAACTGGCTATTTGAGCTGTTAGTGGTATGTGGCATGAATGTGCAAATTGTGTCATGGCAATGACAAAAATATGCACAACTAGTAATGAGTGGCACAGCAGAGCCATTTCTGATAGTTCAATGGTATATTTTTTCTTTTCTTCTTTTATTAAAAGACATGGGCAATCTCGTCATTTAGGTGGATTTAGTGGTCATGCTAATATGCGGAGTGGTAACCAAGGTAGGTCTCGTAAATCCTATTGGGCCTCAGTTTTGATTAAGAAATCAAATGCTGGGATTGCAAGCAAGTAGGTCACAAGAAAGCTGCTTGTCCCTGAACAAGAAACCAGGTGACCATTTTTATGAACCGAACCATAGCACTACCATCAAGGGCTTAACATGATTGGCCCGATGGTATCAAATCCCTATTTATGGATGTATTCTACACAAATCATTTTTCCATATAGGACACTAAATGCGTTACATTCTTGAATAGTTGAAACTCTTTCTTAGGACTGTTGTTAAGGTCTCGAAGGCAATTTCATTTGATAAAAAATTGGATATTCTTTTTGTATTTCCATCGAAGATGGGTTCATTTCTATAATACCATTGTTGAGGAGAACAACTTGTTCTTGAAATCATCATGGCTAAAAGATGAACATAATAATGGGTTCGAGAAAGAAGGAAAGTTGAGAACCCATCTGAGGTGGAAAAATTGTGGGCAAGTAAAATGAATAAAGTGAACTCATTTAGTTCAATGATGGGTTTGATGACTTTGTCCCAATTTTTTTTAATCTTGTTTGTTGGACTATATTCCCGTTGTGTTTATGAAATGGGTTTGTCATCCAATGTTACTTGGTCGAGTCTAAAGGAATTACAAGCATATAATGGTAGTCGATGTGAAGGAAAATACTGTAATTGACCTAAGCCAGTCAAAACATTTCCTACAAAAATTTTGATTGATGAGTTAGCTTTTGTTTAAATAACTCAGTTGTGTTTCTGATAATTGCTTTTGAGTATTGGTGTTAAAAAGGGGAAAAGAAAAAAGAATGAGATGTGGCAATCATTGAAGATGTGAAGGCGACCATAGCAGGTCGGAGAGGATGAGAAACAAAAGGAATTAATATGAGTTATATCAACCAAAAATTATGTTTTCATGCACTTAAAATTTAGGTGCATGACACCTATCATGTTGGTGATAGGCGTGCACGAGATATAATTTTGTCAAGTGAAAGTGTTCAAATAATCATTATGAAAGTTAGTGGTGGTGTCTATCTGAAAATTGATGCCATGTTTGAGGTATCTCTAGATTTGCCCATGATATTTGTTGTTGGCTAATATAAAAAGAATTAGAAATCCCATTCCAACATCTTCAGGGGGGAAAACAATATCAGCATCCAAGTTTGAATTCGAAATGGACCTTATTTTCTCTGTTTTAATATGGGATGAAGATGAATCACCATGCTTACCTTGCAACAGAGGAGAAAGTTGCTCTAACTCAATCAGATGAAATCAAGTTATCAGTTGCTTTCATCTTCATGTGAAAAACGGAGAACTATCTGTTATGAGTACTTGGCTTCTTATGAAAAGAGTTCCAATAGACAGCTGGCCTGAGAATTTTGAACTTCAGATTCTTCTTGGGGTAGTTTTGGAATTCCTTATTAATAAAGCCTTGCTGGATAGTTATATTGTTTGCATAATCTAAATCAGGTTCTCTTTACCCCTTTACCAATATTTCCATCAGTTCATTTTTTCCTTTTTTTTTTTTGGTAATCATGGTGTTTGCTTCAGTTTGTGCACACGTTGACTAATTCACGGGGCACATACTATCTTTCACCAGCACAAGTATCAGGACCAAGGCTTGGATAGATGGGAAGAAAGCGCCTAGGACTTTTATGTCCACTGTCATTTCGACCACATCATTGACCATTAGGCCCACACCCTTGCATACATATTACCGGTAGTGCTATATGTGGTTATTTTGAAATCCGTTGGATAACAATTTGTGATACTTAAATTGTCAATGTCGCTAATCTCTGTATTAGTTTGGTTCTCCTTTTATAATTTTGTTACATATTGCACTACAAGCTGATTCAGAGGTCCAGGTTCTGCTTGACTTTAAAGCTTGTTCTTGGCAATTATTTGTGTTTTCGTAATTTAGTCTTGTACAAAAATAGTTGTCTTGCTGGTATATGACTCTGATTTTATAGTTGTGTTCTTTAACAAGTTCATGTCAATATAGCAGTTTCCTTTACTTCAGCTCTTTTTCTTTATTCAGCTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAAGTAATAGCTACATACAATTATCTGCTTTAGCTCTGCTTTACATCCACATTGTTTTCTATAATTTACTTATGATTTCTTCTTCTCTTGCTAATTCATTTTGGTAGGGACTGGCTGAATCCAGAACTCTTCAAGTGAGATGTCTACAGAGAGGATGACACAATTATCCTGTTGTTACCGCGTGTGATATTTGGTGTTTATCCCTCCCGCGTAGTTGCTGA----GTTTATGAAG-AAACAATCTAATGACTCT-GAAT-TTGCAGACTGTTGAAGATTACCAATTACCTAATGGCTTTTGAATATTGTTAG-----AAGATAGGGTTCATATCATTGCATAATTACGCGTTTCTAATAGGTCAAACATGAATTTTTTGAGCAACACAACTCAATTTTGTACTGAATGGGGAACCATGAGTTTTTATTTTTAAACTAAA</genome_strand>
        <mrna_strand>TCCGTTCCGTTGTTCCATTCTCAGATTGGTTTACTTCCACCACTCGAAATGTCACTTATCATG..........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGTTTATTTTCACGCAAATGAAAGATCTGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG.......................................................................................................TTGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAACTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCTGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAA........................................................................................................GGACTGGCTGAATCCAGAACTCTTCAAGTGAAATGTCTAC-G-GAGGATGACACAATTATCATGTTGTTACCGCGTGTGGTATTTGGTGTATATCCCTCGCGCGTAGTTGCTGAGTTTGTTTATGGAGAAAAGAATCTAATGGCTTTGGAATATT..................................................ATTAGAAGATAGGGTTCATATCGTTGCAAAATTATGCGTTTCTAATAGGTCAAAC----ATTTTTTGAGCAACACAACTTAATTTTGTACTGAAT--GGAACCATAAGTTTTTA-TTTAGAACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E703778" ref_strand="+" ref_description="SGN-E703778 [FA22BG07]">
      <seq>tacactagagagcatcggagtagtcaaagacgcagaaacagattcgatcggccggccgccggaataaggattctcagagtgattgtttgaagagatgggtggcgaatcgaattacgagattcatcaaaacgcctacatcaagttaatccttcatgcccttaagcacaagacttcctccgtcaatggtgttcttcttggtagaatatccggcaacggcgacaacgtcgaaattgtcgaatctgttccgttgttccactctcagattggtttacttccaccactcgaaatttcacttatcatgattgaggagtactatgctgataaaggtttgagtattgtgggttattttcacgcaaatgaaagatccgatgattttgaggtcggaaatgtggccaagaatattggtgatcatatctacaaatatttccctcaagctgctttacttctgatggataacaagaagcttgaagctttactgaaggagggcaaagacaggagtcctgttatgcagctttacactaaggaatcatctaggagctggaaactagcgggagctgatgcaagcggctctctgaaaatcaaagaaccatctgcaaatattgttcttctagactatgtctcatcagggaaatggaaggacatcgtggatttcgatgaccatctggatgacattagcaaggactggctgaatccagaactcttcaagtgagatgtctacagagaggatgacacaattatcctgttgttaccgcgtgtgatatttggtgtttatccctcccgcgtagttgctgagtttatgaagaaacaatctaatgactctgaatttgcagactgttgaagataccaattacctaatggcttttgaatattgttagaagatagggttcatatcattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21445" stop="14877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21145" g_stop="20845" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20514" g_stop="20368" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="448" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20264" g_stop="20202" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="511" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20201" i_stop="15668" i_length="4534">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15667" g_stop="15501" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="678" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15500" i_stop="15397" i_length="104">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15396" g_stop="15177" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="897" r_length="219" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E703778" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>898</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21145" e_stop="20845"/>
          <exon e_start="20514" e_stop="20368"/>
          <exon e_start="20264" e_stop="20202"/>
          <exon e_start="15667" e_stop="15501"/>
          <exon e_start="15396" e_stop="15177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTAGAGAGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATGGTCAGTTCCCCTCCCTTTGAATTAAAGTGGATTTTAGTAGCGCAATTGAAGTATACTAATTGTTTTGATAATGAAATTGAGCATTAGGTTTGTATTTTGTAGTAACTGAAGTACACTTATAATGAAATTGAAGTACACTAATTGCTCGGGCTGGGCTCAGCTTGATGCCCAGGCCTAATTACAGGTTAATACTTGTAGATGTGGGTTCGTATCCACTATATCTGTAGGATAATAGATTTGAACTGAGTATAAAGGGATGTTTTGGAGAATTTTCAACTAAATATGTACCATGCCTTCTAACTTGTTTGGAAGTCTCTTTTATTTGGATAGATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTGGTACCCTTTTTTCTTACTCAACATAGTTCTAATTCAAAATGTTCCAATCTTTAAATTGTAAGTTAACAAAGTGCTTGAGCTTAATTTGCCTTGTATTTTACAGATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAGGTATGCACATATCATTTTAATGAGCTATTGGCTTTTGAACTAAATTCAGTCTTTTTATTCTTCTTCATATTTTTATCCGGTCTAGTTAATTATTGATGCCAAATTCCAGTAATTATGCCATTCAAATTTGAACTTTTGGTGCATTAAGCATTAGTGACTACGTGACCAACTTCATATATATAGTTTATTCTTCCTTGATAATCATTCTAGCTGTCTTATGGTTTCTCTTCTCTATCTGTCCCATTTTTCACGTGGTGATGAAGTTAGTTGGAATAATGTGGTTACTTTAGTTCTTTTGTTTCTATTTAATGCGGAAGGTTATTAGTTCTTTCCATTTACTAGAGAACTTCGTGTTGTTATTTGACGACATAGAACTCTGTCCTTTTGTTTTGATAATTATGGGAGTCCAGGAAATCAAGTTCACATCTAAGTCTGTATGTCCACAATAATCTTAATGTTCTATTTCTGCTGGGTGAACAAATGAAAATCCTTGTTTTATATTCTATCTGCGTTGTTTCTAATTAATCCAGTTGGCACGAAGGAAAAGCAGTTGATAATCCTACTTCTCTGTGCAAAGGGTAATGAACTACTATGCAATGGCTAATGGGTATGACTTGAGGATTGTAAAAACTGATCCCACTAGGACTTGGTATATTTGTGAACTTGGAATGTCCTTTTAGATGTCCTATCTCACAGGATAAAATGAGTGTTGGGTTGAGTAACAAAACTTTGAAATCAGAACATAATTGTGATCCTTGTTACAAAAACCCAAGAGAACTCATTAGCACAATACTTGAAGAAAGAATAACTCCCTCTGTCCCAATTTAAGTGTCTTAGTTTAATTGTCCACAAAGTTTATGAAATAAAGAAATGTTTGAATCTTGTTGTCTTGAATTAAAGATGTGTGTAGTCCTTTAAATCTTGTGTTCTTAAATTTGCCTAGAAGAATGTTGGAACTGAAAAATATACTAAAGATAGAAAGAGACACTCTTTTTGGGACAGTCCAAAAATGAAAGACACTTAAAAAATCAGGATGGAGGGAGTACAAAACAATTCCAAGTACACTGTTAAGGAGCTTCAAGGATAATTATTATAATCTTGAAATATATTTAAAGGGCCATCCAAGTCATAAATATCGATTTTTTTCCGTCCTCAAGCCATACTTATTAGCCATTGCATAGTAGTTCATTATCCTTCTACCTTCCACAATATCAGAAAATGTCATATCCTTCTTCAACTCCCTTATAATTGTCCAGCCTACTAATAACCTCGATTTCTTCATCATACTCCAAATTGGCAAATCAAAAAATTATAGTCCTCAATAACATGATCATTATCAGATGCTACCTCAACGTCTACATGATATGTTTCGATATGATGCAAAATTATATGTTTATGGATGATCAAATTTGTCTCATCTGCAGCAAACAAGTGTATAACTCCCAACTCATGGCGAATAAGGTTCTGCAAAGCCCTAAAATACCATCATCTCCATCAATAATATAGTCCCTACTCGGGTCTGGCAACTAACAATTGTTTGACCTTAATAAACCTTAGCTCTTTCTTGAACTCTTCCACAAAAATCTTTATAAGAAAGCAGGTTTTTGGTCAAACCTATGACAGAAGTGCGCCAGTTTCTTACTATTGAATAAGTGAGGAGAAAAGACTCATTCACCCCATAGTGGAAACACACTTTCTCTTTGTCAATCATGCTTCGGTAAAGATCACATGCCAAGGAAAAAATGAGGGACCACATCAGCAACATACATAGGCTATACAAAATCTGTGAATATAAAAACTCTAGAATGACACAACACATTTTGGGACCATAAAAGAAAGGAACAGAACCATAAAAACACTGAAACTTTACATATTAAGCTATGATTTACATACTCAAAAATAAGAAACTCCACATTAACAGATTCTCTACCCACCACCTTAAATAATTATTTAAATAGAGAACCAGCCTTTATGAGCTATTCCTTTTGTCCTTCTCCCTCATAAACAAGCTATGAAGTCAACTTTGGCCATAGTTTTTTTCCCGATCAATTACCAAAAGAACTGAGTTAAGGCTTAAGGATTTGGGTCTGGTCGAGTAAGGGAATTGAGGAGAATGGATTATGGGTTTGGGCAAAAAGAGTCTGGGTCGGGTTCTAATATGGAGCGGTTAAAGCTAATTGGCATGGGTATTAAATAAGTGGGACATGTTAGTGATGTGACCTGTTTAATTTGATGTTATTGTCCAATTCAGTATTTTTAAACCAAAAATTGGTATTCAAACTGGCTATTTGAGCTGTTAGTGGTATGTGGCATGAATGTGCAAATTGTGTCATGGCAATGACAAAAATATGCACAACTAGTAATGAGTGGCACAGCAGAGCCATTTCTGATAGTTCAATGGTATATTTTTTCTTTTCTTCTTTTATTAAAAGACATGGGCAATCTCGTCATTTAGGTGGATTTAGTGGTCATGCTAATATGCGGAGTGGTAACCAAGGTAGGTCTCGTAAATCCTATTGGGCCTCAGTTTTGATTAAGAAATCAAATGCTGGGATTGCAAGCAAGTAGGTCACAAGAAAGCTGCTTGTCCCTGAACAAGAAACCAGGTGACCATTTTTATGAACCGAACCATAGCACTACCATCAAGGGCTTAACATGATTGGCCCGATGGTATCAAATCCCTATTTATGGATGTATTCTACACAAATCATTTTTCCATATAGGACACTAAATGCGTTACATTCTTGAATAGTTGAAACTCTTTCTTAGGACTGTTGTTAAGGTCTCGAAGGCAATTTCATTTGATAAAAAATTGGATATTCTTTTTGTATTTCCATCGAAGATGGGTTCATTTCTATAATACCATTGTTGAGGAGAACAACTTGTTCTTGAAATCATCATGGCTAAAAGATGAACATAATAATGGGTTCGAGAAAGAAGGAAAGTTGAGAACCCATCTGAGGTGGAAAAATTGTGGGCAAGTAAAATGAATAAAGTGAACTCATTTAGTTCAATGATGGGTTTGATGACTTTGTCCCAATTTTTTTTAATCTTGTTTGTTGGACTATATTCCCGTTGTGTTTATGAAATGGGTTTGTCATCCAATGTTACTTGGTCGAGTCTAAAGGAATTACAAGCATATAATGGTAGTCGATGTGAAGGAAAATACTGTAATTGACCTAAGCCAGTCAAAACATTTCCTACAAAAATTTTGATTGATGAGTTAGCTTTTGTTTAAATAACTCAGTTGTGTTTCTGATAATTGCTTTTGAGTATTGGTGTTAAAAAGGGGAAAAGAAAAAAGAATGAGATGTGGCAATCATTGAAGATGTGAAGGCGACCATAGCAGGTCGGAGAGGATGAGAAACAAAAGGAATTAATATGAGTTATATCAACCAAAAATTATGTTTTCATGCACTTAAAATTTAGGTGCATGACACCTATCATGTTGGTGATAGGCGTGCACGAGATATAATTTTGTCAAGTGAAAGTGTTCAAATAATCATTATGAAAGTTAGTGGTGGTGTCTATCTGAAAATTGATGCCATGTTTGAGGTATCTCTAGATTTGCCCATGATATTTGTTGTTGGCTAATATAAAAAGAATTAGAAATCCCATTCCAACATCTTCAGGGGGGAAAACAATATCAGCATCCAAGTTTGAATTCGAAATGGACCTTATTTTCTCTGTTTTAATATGGGATGAAGATGAATCACCATGCTTACCTTGCAACAGAGGAGAAAGTTGCTCTAACTCAATCAGATGAAATCAAGTTATCAGTTGCTTTCATCTTCATGTGAAAAACGGAGAACTATCTGTTATGAGTACTTGGCTTCTTATGAAAAGAGTTCCAATAGACAGCTGGCCTGAGAATTTTGAACTTCAGATTCTTCTTGGGGTAGTTTTGGAATTCCTTATTAATAAAGCCTTGCTGGATAGTTATATTGTTTGCATAATCTAAATCAGGTTCTCTTTACCCCTTTACCAATATTTCCATCAGTTCATTTTTTCCTTTTTTTTTTTTGGTAATCATGGTGTTTGCTTCAGTTTGTGCACACGTTGACTAATTCACGGGGCACATACTATCTTTCACCAGCACAAGTATCAGGACCAAGGCTTGGATAGATGGGAAGAAAGCGCCTAGGACTTTTATGTCCACTGTCATTTCGACCACATCATTGACCATTAGGCCCACACCCTTGCATACATATTACCGGTAGTGCTATATGTGGTTATTTTGAAATCCGTTGGATAACAATTTGTGATACTTAAATTGTCAATGTCGCTAATCTCTGTATTAGTTTGGTTCTCCTTTTATAATTTTGTTACATATTGCACTACAAGCTGATTCAGAGGTCCAGGTTCTGCTTGACTTTAAAGCTTGTTCTTGGCAATTATTTGTGTTTTCGTAATTTAGTCTTGTACAAAAATAGTTGTCTTGCTGGTATATGACTCTGATTTTATAGTTGTGTTCTTTAACAAGTTCATGTCAATATAGCAGTTTCCTTTACTTCAGCTCTTTTTCTTTATTCAGCTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAAGTAATAGCTACATACAATTATCTGCTTTAGCTCTGCTTTACATCCACATTGTTTTCTATAATTTACTTATGATTTCTTCTTCTCTTGCTAATTCATTTTGGTAGGGACTGGCTGAATCCAGAACTCTTCAAGTGAGATGTCTACAGAGAGGATGACACAATTATCCTGTTGTTACCGCGTGTGATATTTGGTGTTTATCCCTCCCGCGTAGTTGCTGAGTTTATGAAGAAACAATCTAATGACTCTGAATTTGCAGACTGTTGAAGATTACCAATTACCTAATGGCTTTTGAATATTGTTAGAAGATAGGGTTCATATCATTGC</genome_strand>
        <mrna_strand>TACACTAGAGAGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG..........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG.......................................................................................................ATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAA........................................................................................................GGACTGGCTGAATCCAGAACTCTTCAAGTGAGATGTCTACAGAGAGGATGACACAATTATCCTGTTGTTACCGCGTGTGATATTTGGTGTTTATCCCTCCCGCGTAGTTGCTGAGTTTATGAAGAAACAATCTAATGACTCTGAATTTGCAGACTGTTGAAGA-TACCAATTACCTAATGGCTTTTGAATATTGTTAGAAGATAGGGTTCATATCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E354182" ref_strand="+" ref_description="SGN-E354182 [cTOS-16-I1]">
      <seq>cgcaaatgaaagatccgatgattttgaggtcggaaatgtggccaagaatattggtgatcatatctacaaatatttccctcaagctgctttacttctgatggataacaagaagcttgaagctttactgaaggagggcaaagacaggagtcctgttatgcagctttacactaaggaatcatctaggagctggaaactagcgggagctgatgcaagcggctctctgaaaatcaaagaaccatctgcaaatattgttcttctagactatgtctcatcagggaaatggaaggacatcgtggatttcgatgaccatctggatgacattagcaaggactggctgaatccagaactcttcaagtgagatgtctacagagaggatgacacaattatcctgttgttaccgcgtgtgatatttggtgtttatccctcccgcgtagttgctgagtttatgaagaaacaatctaatgactctgaatttgcagactgttgaagnataccaattacctaatggcttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="20764" stop="14909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20464" g_stop="20368" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20264" g_stop="20202" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="160" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20201" i_stop="15668" i_length="4534">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15667" g_stop="15501" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="327" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15500" i_stop="15397" i_length="104">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15396" g_stop="15209" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="515" r_length="188" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E354182" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20464" e_stop="20368"/>
          <exon e_start="20264" e_stop="20202"/>
          <exon e_start="15667" e_stop="15501"/>
          <exon e_start="15396" e_stop="15209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTGGTACCCTTTTTTCTTACTCAACATAGTTCTAATTCAAAATGTTCCAATCTTTAAATTGTAAGTTAACAAAGTGCTTGAGCTTAATTTGCCTTGTATTTTACAGATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAGGTATGCACATATCATTTTAATGAGCTATTGGCTTTTGAACTAAATTCAGTCTTTTTATTCTTCTTCATATTTTTATCCGGTCTAGTTAATTATTGATGCCAAATTCCAGTAATTATGCCATTCAAATTTGAACTTTTGGTGCATTAAGCATTAGTGACTACGTGACCAACTTCATATATATAGTTTATTCTTCCTTGATAATCATTCTAGCTGTCTTATGGTTTCTCTTCTCTATCTGTCCCATTTTTCACGTGGTGATGAAGTTAGTTGGAATAATGTGGTTACTTTAGTTCTTTTGTTTCTATTTAATGCGGAAGGTTATTAGTTCTTTCCATTTACTAGAGAACTTCGTGTTGTTATTTGACGACATAGAACTCTGTCCTTTTGTTTTGATAATTATGGGAGTCCAGGAAATCAAGTTCACATCTAAGTCTGTATGTCCACAATAATCTTAATGTTCTATTTCTGCTGGGTGAACAAATGAAAATCCTTGTTTTATATTCTATCTGCGTTGTTTCTAATTAATCCAGTTGGCACGAAGGAAAAGCAGTTGATAATCCTACTTCTCTGTGCAAAGGGTAATGAACTACTATGCAATGGCTAATGGGTATGACTTGAGGATTGTAAAAACTGATCCCACTAGGACTTGGTATATTTGTGAACTTGGAATGTCCTTTTAGATGTCCTATCTCACAGGATAAAATGAGTGTTGGGTTGAGTAACAAAACTTTGAAATCAGAACATAATTGTGATCCTTGTTACAAAAACCCAAGAGAACTCATTAGCACAATACTTGAAGAAAGAATAACTCCCTCTGTCCCAATTTAAGTGTCTTAGTTTAATTGTCCACAAAGTTTATGAAATAAAGAAATGTTTGAATCTTGTTGTCTTGAATTAAAGATGTGTGTAGTCCTTTAAATCTTGTGTTCTTAAATTTGCCTAGAAGAATGTTGGAACTGAAAAATATACTAAAGATAGAAAGAGACACTCTTTTTGGGACAGTCCAAAAATGAAAGACACTTAAAAAATCAGGATGGAGGGAGTACAAAACAATTCCAAGTACACTGTTAAGGAGCTTCAAGGATAATTATTATAATCTTGAAATATATTTAAAGGGCCATCCAAGTCATAAATATCGATTTTTTTCCGTCCTCAAGCCATACTTATTAGCCATTGCATAGTAGTTCATTATCCTTCTACCTTCCACAATATCAGAAAATGTCATATCCTTCTTCAACTCCCTTATAATTGTCCAGCCTACTAATAACCTCGATTTCTTCATCATACTCCAAATTGGCAAATCAAAAAATTATAGTCCTCAATAACATGATCATTATCAGATGCTACCTCAACGTCTACATGATATGTTTCGATATGATGCAAAATTATATGTTTATGGATGATCAAATTTGTCTCATCTGCAGCAAACAAGTGTATAACTCCCAACTCATGGCGAATAAGGTTCTGCAAAGCCCTAAAATACCATCATCTCCATCAATAATATAGTCCCTACTCGGGTCTGGCAACTAACAATTGTTTGACCTTAATAAACCTTAGCTCTTTCTTGAACTCTTCCACAAAAATCTTTATAAGAAAGCAGGTTTTTGGTCAAACCTATGACAGAAGTGCGCCAGTTTCTTACTATTGAATAAGTGAGGAGAAAAGACTCATTCACCCCATAGTGGAAACACACTTTCTCTTTGTCAATCATGCTTCGGTAAAGATCACATGCCAAGGAAAAAATGAGGGACCACATCAGCAACATACATAGGCTATACAAAATCTGTGAATATAAAAACTCTAGAATGACACAACACATTTTGGGACCATAAAAGAAAGGAACAGAACCATAAAAACACTGAAACTTTACATATTAAGCTATGATTTACATACTCAAAAATAAGAAACTCCACATTAACAGATTCTCTACCCACCACCTTAAATAATTATTTAAATAGAGAACCAGCCTTTATGAGCTATTCCTTTTGTCCTTCTCCCTCATAAACAAGCTATGAAGTCAACTTTGGCCATAGTTTTTTTCCCGATCAATTACCAAAAGAACTGAGTTAAGGCTTAAGGATTTGGGTCTGGTCGAGTAAGGGAATTGAGGAGAATGGATTATGGGTTTGGGCAAAAAGAGTCTGGGTCGGGTTCTAATATGGAGCGGTTAAAGCTAATTGGCATGGGTATTAAATAAGTGGGACATGTTAGTGATGTGACCTGTTTAATTTGATGTTATTGTCCAATTCAGTATTTTTAAACCAAAAATTGGTATTCAAACTGGCTATTTGAGCTGTTAGTGGTATGTGGCATGAATGTGCAAATTGTGTCATGGCAATGACAAAAATATGCACAACTAGTAATGAGTGGCACAGCAGAGCCATTTCTGATAGTTCAATGGTATATTTTTTCTTTTCTTCTTTTATTAAAAGACATGGGCAATCTCGTCATTTAGGTGGATTTAGTGGTCATGCTAATATGCGGAGTGGTAACCAAGGTAGGTCTCGTAAATCCTATTGGGCCTCAGTTTTGATTAAGAAATCAAATGCTGGGATTGCAAGCAAGTAGGTCACAAGAAAGCTGCTTGTCCCTGAACAAGAAACCAGGTGACCATTTTTATGAACCGAACCATAGCACTACCATCAAGGGCTTAACATGATTGGCCCGATGGTATCAAATCCCTATTTATGGATGTATTCTACACAAATCATTTTTCCATATAGGACACTAAATGCGTTACATTCTTGAATAGTTGAAACTCTTTCTTAGGACTGTTGTTAAGGTCTCGAAGGCAATTTCATTTGATAAAAAATTGGATATTCTTTTTGTATTTCCATCGAAGATGGGTTCATTTCTATAATACCATTGTTGAGGAGAACAACTTGTTCTTGAAATCATCATGGCTAAAAGATGAACATAATAATGGGTTCGAGAAAGAAGGAAAGTTGAGAACCCATCTGAGGTGGAAAAATTGTGGGCAAGTAAAATGAATAAAGTGAACTCATTTAGTTCAATGATGGGTTTGATGACTTTGTCCCAATTTTTTTTAATCTTGTTTGTTGGACTATATTCCCGTTGTGTTTATGAAATGGGTTTGTCATCCAATGTTACTTGGTCGAGTCTAAAGGAATTACAAGCATATAATGGTAGTCGATGTGAAGGAAAATACTGTAATTGACCTAAGCCAGTCAAAACATTTCCTACAAAAATTTTGATTGATGAGTTAGCTTTTGTTTAAATAACTCAGTTGTGTTTCTGATAATTGCTTTTGAGTATTGGTGTTAAAAAGGGGAAAAGAAAAAAGAATGAGATGTGGCAATCATTGAAGATGTGAAGGCGACCATAGCAGGTCGGAGAGGATGAGAAACAAAAGGAATTAATATGAGTTATATCAACCAAAAATTATGTTTTCATGCACTTAAAATTTAGGTGCATGACACCTATCATGTTGGTGATAGGCGTGCACGAGATATAATTTTGTCAAGTGAAAGTGTTCAAATAATCATTATGAAAGTTAGTGGTGGTGTCTATCTGAAAATTGATGCCATGTTTGAGGTATCTCTAGATTTGCCCATGATATTTGTTGTTGGCTAATATAAAAAGAATTAGAAATCCCATTCCAACATCTTCAGGGGGGAAAACAATATCAGCATCCAAGTTTGAATTCGAAATGGACCTTATTTTCTCTGTTTTAATATGGGATGAAGATGAATCACCATGCTTACCTTGCAACAGAGGAGAAAGTTGCTCTAACTCAATCAGATGAAATCAAGTTATCAGTTGCTTTCATCTTCATGTGAAAAACGGAGAACTATCTGTTATGAGTACTTGGCTTCTTATGAAAAGAGTTCCAATAGACAGCTGGCCTGAGAATTTTGAACTTCAGATTCTTCTTGGGGTAGTTTTGGAATTCCTTATTAATAAAGCCTTGCTGGATAGTTATATTGTTTGCATAATCTAAATCAGGTTCTCTTTACCCCTTTACCAATATTTCCATCAGTTCATTTTTTCCTTTTTTTTTTTTGGTAATCATGGTGTTTGCTTCAGTTTGTGCACACGTTGACTAATTCACGGGGCACATACTATCTTTCACCAGCACAAGTATCAGGACCAAGGCTTGGATAGATGGGAAGAAAGCGCCTAGGACTTTTATGTCCACTGTCATTTCGACCACATCATTGACCATTAGGCCCACACCCTTGCATACATATTACCGGTAGTGCTATATGTGGTTATTTTGAAATCCGTTGGATAACAATTTGTGATACTTAAATTGTCAATGTCGCTAATCTCTGTATTAGTTTGGTTCTCCTTTTATAATTTTGTTACATATTGCACTACAAGCTGATTCAGAGGTCCAGGTTCTGCTTGACTTTAAAGCTTGTTCTTGGCAATTATTTGTGTTTTCGTAATTTAGTCTTGTACAAAAATAGTTGTCTTGCTGGTATATGACTCTGATTTTATAGTTGTGTTCTTTAACAAGTTCATGTCAATATAGCAGTTTCCTTTACTTCAGCTCTTTTTCTTTATTCAGCTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAAGTAATAGCTACATACAATTATCTGCTTTAGCTCTGCTTTACATCCACATTGTTTTCTATAATTTACTTATGATTTCTTCTTCTCTTGCTAATTCATTTTGGTAGGGACTGGCTGAATCCAGAACTCTTCAAGTGAGATGTCTACAGAGAGGATGACACAATTATCCTGTTGTTACCGCGTGTGATATTTGGTGTTTATCCCTCCCGCGTAGTTGCTGAGTTTATGAAGAAACAATCTAATGACTCTGAATTTGCAGACTGTTGAAGATTACCAATTACCTAATGGCTTTTGA</genome_strand>
        <mrna_strand>CGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG.......................................................................................................ATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAA........................................................................................................GGACTGGCTGAATCCAGAACTCTTCAAGTGAGATGTCTACAGAGAGGATGACACAATTATCCTGTTGTTACCGCGTGTGATATTTGGTGTTTATCCCTCCCGCGTAGTTGCTGAGTTTATGAAGAAACAATCTAATGACTCTGAATTTGCAGACTGTTGAAGNATACCAATTACCTAATGGCTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E585490" ref_strand="+" ref_description="SGN-E585490 [67950]">
      <seq>ctcaagtacatcggagtagtcaaagacgcagtcagattcgatcggccggcaaccggaatagggattctcatagtgattgtttgaagagatgggtggcgaatcgaattacgagattcatcaaaatgcctacatcaagttaatccttcatgcccttaagcacaagacttcctccgtcaacggtgttcttcttggccgaatctccggcaacggcgacaacgttgaaattgtcgaatccgttccgtttttccactctcagattggtttacttccaccactcgaaatttcacttatcatgattgaggagtactatgctgataaaggtttgagtattgtgggttattttcacgcaaatgaaagatctgatgattttgaggtcggaaatgtggccaagaatattggtgatcatatctacaaatatttccctcaagctgctttacttctgttggataacaagaagcttgaagctttactgaaggaaggcaaagacaggagtcctgttatgcagctttacactaaggaatcatctaggagctggaaactagcgggagctgatgcaagcggctctctgaaaatcaaagaaccatctgcaaatattgttcttctagactatgtctcatctgggaaatggaaggacatcgtggattttgatgaccatctggatgacattagcaaggactggctgaatccagaactcttcaagtgaaatgtctacggaggatgacacaattatcatgttgttaccgcgttgtggcaattggtgtttatccctcccgggcagttgcttgagtttatttatgggagaaaaagaatctaatggggtctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21441" stop="14967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21141" g_stop="20845" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20514" g_stop="20368" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="442" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20264" g_stop="20202" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="505" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20201" i_stop="15668" i_length="4534">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15667" g_stop="15501" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="672" r_length="167" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15500" i_stop="15397" i_length="104">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15396" g_stop="15279" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="790" r_length="118" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E585490" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21141" e_stop="20845"/>
          <exon e_start="20514" e_stop="20368"/>
          <exon e_start="20264" e_stop="20202"/>
          <exon e_start="15667" e_stop="15501"/>
          <exon e_start="15396" e_stop="15279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAGAGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATGGTCAGTTCCCCTCCCTTTGAATTAAAGTGGATTTTAGTAGCGCAATTGAAGTATACTAATTGTTTTGATAATGAAATTGAGCATTAGGTTTGTATTTTGTAGTAACTGAAGTACACTTATAATGAAATTGAAGTACACTAATTGCTCGGGCTGGGCTCAGCTTGATGCCCAGGCCTAATTACAGGTTAATACTTGTAGATGTGGGTTCGTATCCACTATATCTGTAGGATAATAGATTTGAACTGAGTATAAAGGGATGTTTTGGAGAATTTTCAACTAAATATGTACCATGCCTTCTAACTTGTTTGGAAGTCTCTTTTATTTGGATAGATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTGGTACCCTTTTTTCTTACTCAACATAGTTCTAATTCAAAATGTTCCAATCTTTAAATTGTAAGTTAACAAAGTGCTTGAGCTTAATTTGCCTTGTATTTTACAGATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAGGTATGCACATATCATTTTAATGAGCTATTGGCTTTTGAACTAAATTCAGTCTTTTTATTCTTCTTCATATTTTTATCCGGTCTAGTTAATTATTGATGCCAAATTCCAGTAATTATGCCATTCAAATTTGAACTTTTGGTGCATTAAGCATTAGTGACTACGTGACCAACTTCATATATATAGTTTATTCTTCCTTGATAATCATTCTAGCTGTCTTATGGTTTCTCTTCTCTATCTGTCCCATTTTTCACGTGGTGATGAAGTTAGTTGGAATAATGTGGTTACTTTAGTTCTTTTGTTTCTATTTAATGCGGAAGGTTATTAGTTCTTTCCATTTACTAGAGAACTTCGTGTTGTTATTTGACGACATAGAACTCTGTCCTTTTGTTTTGATAATTATGGGAGTCCAGGAAATCAAGTTCACATCTAAGTCTGTATGTCCACAATAATCTTAATGTTCTATTTCTGCTGGGTGAACAAATGAAAATCCTTGTTTTATATTCTATCTGCGTTGTTTCTAATTAATCCAGTTGGCACGAAGGAAAAGCAGTTGATAATCCTACTTCTCTGTGCAAAGGGTAATGAACTACTATGCAATGGCTAATGGGTATGACTTGAGGATTGTAAAAACTGATCCCACTAGGACTTGGTATATTTGTGAACTTGGAATGTCCTTTTAGATGTCCTATCTCACAGGATAAAATGAGTGTTGGGTTGAGTAACAAAACTTTGAAATCAGAACATAATTGTGATCCTTGTTACAAAAACCCAAGAGAACTCATTAGCACAATACTTGAAGAAAGAATAACTCCCTCTGTCCCAATTTAAGTGTCTTAGTTTAATTGTCCACAAAGTTTATGAAATAAAGAAATGTTTGAATCTTGTTGTCTTGAATTAAAGATGTGTGTAGTCCTTTAAATCTTGTGTTCTTAAATTTGCCTAGAAGAATGTTGGAACTGAAAAATATACTAAAGATAGAAAGAGACACTCTTTTTGGGACAGTCCAAAAATGAAAGACACTTAAAAAATCAGGATGGAGGGAGTACAAAACAATTCCAAGTACACTGTTAAGGAGCTTCAAGGATAATTATTATAATCTTGAAATATATTTAAAGGGCCATCCAAGTCATAAATATCGATTTTTTTCCGTCCTCAAGCCATACTTATTAGCCATTGCATAGTAGTTCATTATCCTTCTACCTTCCACAATATCAGAAAATGTCATATCCTTCTTCAACTCCCTTATAATTGTCCAGCCTACTAATAACCTCGATTTCTTCATCATACTCCAAATTGGCAAATCAAAAAATTATAGTCCTCAATAACATGATCATTATCAGATGCTACCTCAACGTCTACATGATATGTTTCGATATGATGCAAAATTATATGTTTATGGATGATCAAATTTGTCTCATCTGCAGCAAACAAGTGTATAACTCCCAACTCATGGCGAATAAGGTTCTGCAAAGCCCTAAAATACCATCATCTCCATCAATAATATAGTCCCTACTCGGGTCTGGCAACTAACAATTGTTTGACCTTAATAAACCTTAGCTCTTTCTTGAACTCTTCCACAAAAATCTTTATAAGAAAGCAGGTTTTTGGTCAAACCTATGACAGAAGTGCGCCAGTTTCTTACTATTGAATAAGTGAGGAGAAAAGACTCATTCACCCCATAGTGGAAACACACTTTCTCTTTGTCAATCATGCTTCGGTAAAGATCACATGCCAAGGAAAAAATGAGGGACCACATCAGCAACATACATAGGCTATACAAAATCTGTGAATATAAAAACTCTAGAATGACACAACACATTTTGGGACCATAAAAGAAAGGAACAGAACCATAAAAACACTGAAACTTTACATATTAAGCTATGATTTACATACTCAAAAATAAGAAACTCCACATTAACAGATTCTCTACCCACCACCTTAAATAATTATTTAAATAGAGAACCAGCCTTTATGAGCTATTCCTTTTGTCCTTCTCCCTCATAAACAAGCTATGAAGTCAACTTTGGCCATAGTTTTTTTCCCGATCAATTACCAAAAGAACTGAGTTAAGGCTTAAGGATTTGGGTCTGGTCGAGTAAGGGAATTGAGGAGAATGGATTATGGGTTTGGGCAAAAAGAGTCTGGGTCGGGTTCTAATATGGAGCGGTTAAAGCTAATTGGCATGGGTATTAAATAAGTGGGACATGTTAGTGATGTGACCTGTTTAATTTGATGTTATTGTCCAATTCAGTATTTTTAAACCAAAAATTGGTATTCAAACTGGCTATTTGAGCTGTTAGTGGTATGTGGCATGAATGTGCAAATTGTGTCATGGCAATGACAAAAATATGCACAACTAGTAATGAGTGGCACAGCAGAGCCATTTCTGATAGTTCAATGGTATATTTTTTCTTTTCTTCTTTTATTAAAAGACATGGGCAATCTCGTCATTTAGGTGGATTTAGTGGTCATGCTAATATGCGGAGTGGTAACCAAGGTAGGTCTCGTAAATCCTATTGGGCCTCAGTTTTGATTAAGAAATCAAATGCTGGGATTGCAAGCAAGTAGGTCACAAGAAAGCTGCTTGTCCCTGAACAAGAAACCAGGTGACCATTTTTATGAACCGAACCATAGCACTACCATCAAGGGCTTAACATGATTGGCCCGATGGTATCAAATCCCTATTTATGGATGTATTCTACACAAATCATTTTTCCATATAGGACACTAAATGCGTTACATTCTTGAATAGTTGAAACTCTTTCTTAGGACTGTTGTTAAGGTCTCGAAGGCAATTTCATTTGATAAAAAATTGGATATTCTTTTTGTATTTCCATCGAAGATGGGTTCATTTCTATAATACCATTGTTGAGGAGAACAACTTGTTCTTGAAATCATCATGGCTAAAAGATGAACATAATAATGGGTTCGAGAAAGAAGGAAAGTTGAGAACCCATCTGAGGTGGAAAAATTGTGGGCAAGTAAAATGAATAAAGTGAACTCATTTAGTTCAATGATGGGTTTGATGACTTTGTCCCAATTTTTTTTAATCTTGTTTGTTGGACTATATTCCCGTTGTGTTTATGAAATGGGTTTGTCATCCAATGTTACTTGGTCGAGTCTAAAGGAATTACAAGCATATAATGGTAGTCGATGTGAAGGAAAATACTGTAATTGACCTAAGCCAGTCAAAACATTTCCTACAAAAATTTTGATTGATGAGTTAGCTTTTGTTTAAATAACTCAGTTGTGTTTCTGATAATTGCTTTTGAGTATTGGTGTTAAAAAGGGGAAAAGAAAAAAGAATGAGATGTGGCAATCATTGAAGATGTGAAGGCGACCATAGCAGGTCGGAGAGGATGAGAAACAAAAGGAATTAATATGAGTTATATCAACCAAAAATTATGTTTTCATGCACTTAAAATTTAGGTGCATGACACCTATCATGTTGGTGATAGGCGTGCACGAGATATAATTTTGTCAAGTGAAAGTGTTCAAATAATCATTATGAAAGTTAGTGGTGGTGTCTATCTGAAAATTGATGCCATGTTTGAGGTATCTCTAGATTTGCCCATGATATTTGTTGTTGGCTAATATAAAAAGAATTAGAAATCCCATTCCAACATCTTCAGGGGGGAAAACAATATCAGCATCCAAGTTTGAATTCGAAATGGACCTTATTTTCTCTGTTTTAATATGGGATGAAGATGAATCACCATGCTTACCTTGCAACAGAGGAGAAAGTTGCTCTAACTCAATCAGATGAAATCAAGTTATCAGTTGCTTTCATCTTCATGTGAAAAACGGAGAACTATCTGTTATGAGTACTTGGCTTCTTATGAAAAGAGTTCCAATAGACAGCTGGCCTGAGAATTTTGAACTTCAGATTCTTCTTGGGGTAGTTTTGGAATTCCTTATTAATAAAGCCTTGCTGGATAGTTATATTGTTTGCATAATCTAAATCAGGTTCTCTTTACCCCTTTACCAATATTTCCATCAGTTCATTTTTTCCTTTTTTTTTTTTGGTAATCATGGTGTTTGCTTCAGTTTGTGCACACGTTGACTAATTCACGGGGCACATACTATCTTTCACCAGCACAAGTATCAGGACCAAGGCTTGGATAGATGGGAAGAAAGCGCCTAGGACTTTTATGTCCACTGTCATTTCGACCACATCATTGACCATTAGGCCCACACCCTTGCATACATATTACCGGTAGTGCTATATGTGGTTATTTTGAAATCCGTTGGATAACAATTTGTGATACTTAAATTGTCAATGTCGCTAATCTCTGTATTAGTTTGGTTCTCCTTTTATAATTTTGTTACATATTGCACTACAAGCTGATTCAGAGGTCCAGGTTCTGCTTGACTTTAAAGCTTGTTCTTGGCAATTATTTGTGTTTTCGTAATTTAGTCTTGTACAAAAATAGTTGTCTTGCTGGTATATGACTCTGATTTTATAGTTGTGTTCTTTAACAAGTTCATGTCAATATAGCAGTTTCCTTTACTTCAGCTCTTTTTCTTTATTCAGCTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAAGTAATAGCTACATACAATTATCTGCTTTAGCTCTGCTTTACATCCACATTGTTTTCTATAATTTACTTATGATTTCTTCTTCTCTTGCTAATTCATTTTGGTAGGGACTGGCTGAATCCAGAACTCTTCAAGTGAGATGTCTACAGAGAGGATGACACAATTATCCTGTTGTTACCGCG-TGTGATATTTGGTGTTTATCCCTCCCGCGTAGTTGC-TGAGTTT</genome_strand>
        <mrna_strand>CTCAAGTACATCGGAGTAGTCAAAGACGCAG--TCAGATTCGATCGGCCGGCAACCGGAATAGGGATTCTCATAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAATGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAACGGTGTTCTTCTTGGCCGAATCTCCGGCAACGGCGACAACGTTGAAATTGTCGAATCCGTTCCGTTTTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG..........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCTGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG.......................................................................................................TTGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAAGGCAAAGACAGGAGTCCTGTTATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCTGGGAAATGGAAGGACATCGTGGATTTTGATGACCATCTGGATGACATTAGCAA........................................................................................................GGACTGGCTGAATCCAGAACTCTTCAAGTGAAATGTCTAC-G-GAGGATGACACAATTATCATGTTGTTACCGCGTTGTGGCAATTGGTGTTTATCCCTCCCGGGCAGTTGCTTGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E407334" ref_strand="+" ref_description="SGN-E407334 [PPI-6-B24]">
      <seq>catcaaaatgcctacatcaagttaatccttcatgcccttaagcacaagacttcctccgtcaacggtgttcttcttggccgaatctccggcaacggcgacaacgttgaaattgtcgaatccgttccgtttttccactctcagattggtttacttccaccactcgaaatttcacttatcatgattgaggagtactatgctgataaaggtttgagtattgtgggttattttcacgcaaatgaaagatctgatgattttgaggtcggaaatgtggccaagaatattggtgatcatatctacaaatatttccctcaagctgctttacttctgttggataacaagaagcttgaagctttactgaaggaaggcaaagacaggagtcctgttatgcagctttacactaaggaatcatctaggagctggaaactagcgggagctgatgcaagcggctctctgaaaatcaaagaaccatctgcaaatattgttcttctagactatgtctcatctgggaaatggaaggacatcgtggattttgatgaccatctggatgacattagcaaggactggctgaatccagaactcttcaagtgaaatgtctacggaggatgacacaattatcatgttgttaccgcgtgtggtatttggtgtttatccctcccgcgcagttgctgagtttatttatggagaaaagaaatctatggctctgaatttgcagacctatgaagattatcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21324" stop="14967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21024" g_stop="20845" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20514" g_stop="20368" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="327" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20264" g_stop="20202" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="390" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20201" i_stop="15668" i_length="4534">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15667" g_stop="15501" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="557" r_length="167" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15500" i_stop="15397" i_length="104">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15396" g_stop="15279" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="673" r_length="116" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E407334" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21024" e_stop="20845"/>
          <exon e_start="20514" e_stop="20368"/>
          <exon e_start="20264" e_stop="20202"/>
          <exon e_start="15667" e_stop="15501"/>
          <exon e_start="15396" e_stop="15279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATGGTCAGTTCCCCTCCCTTTGAATTAAAGTGGATTTTAGTAGCGCAATTGAAGTATACTAATTGTTTTGATAATGAAATTGAGCATTAGGTTTGTATTTTGTAGTAACTGAAGTACACTTATAATGAAATTGAAGTACACTAATTGCTCGGGCTGGGCTCAGCTTGATGCCCAGGCCTAATTACAGGTTAATACTTGTAGATGTGGGTTCGTATCCACTATATCTGTAGGATAATAGATTTGAACTGAGTATAAAGGGATGTTTTGGAGAATTTTCAACTAAATATGTACCATGCCTTCTAACTTGTTTGGAAGTCTCTTTTATTTGGATAGATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTGGTACCCTTTTTTCTTACTCAACATAGTTCTAATTCAAAATGTTCCAATCTTTAAATTGTAAGTTAACAAAGTGCTTGAGCTTAATTTGCCTTGTATTTTACAGATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAGGTATGCACATATCATTTTAATGAGCTATTGGCTTTTGAACTAAATTCAGTCTTTTTATTCTTCTTCATATTTTTATCCGGTCTAGTTAATTATTGATGCCAAATTCCAGTAATTATGCCATTCAAATTTGAACTTTTGGTGCATTAAGCATTAGTGACTACGTGACCAACTTCATATATATAGTTTATTCTTCCTTGATAATCATTCTAGCTGTCTTATGGTTTCTCTTCTCTATCTGTCCCATTTTTCACGTGGTGATGAAGTTAGTTGGAATAATGTGGTTACTTTAGTTCTTTTGTTTCTATTTAATGCGGAAGGTTATTAGTTCTTTCCATTTACTAGAGAACTTCGTGTTGTTATTTGACGACATAGAACTCTGTCCTTTTGTTTTGATAATTATGGGAGTCCAGGAAATCAAGTTCACATCTAAGTCTGTATGTCCACAATAATCTTAATGTTCTATTTCTGCTGGGTGAACAAATGAAAATCCTTGTTTTATATTCTATCTGCGTTGTTTCTAATTAATCCAGTTGGCACGAAGGAAAAGCAGTTGATAATCCTACTTCTCTGTGCAAAGGGTAATGAACTACTATGCAATGGCTAATGGGTATGACTTGAGGATTGTAAAAACTGATCCCACTAGGACTTGGTATATTTGTGAACTTGGAATGTCCTTTTAGATGTCCTATCTCACAGGATAAAATGAGTGTTGGGTTGAGTAACAAAACTTTGAAATCAGAACATAATTGTGATCCTTGTTACAAAAACCCAAGAGAACTCATTAGCACAATACTTGAAGAAAGAATAACTCCCTCTGTCCCAATTTAAGTGTCTTAGTTTAATTGTCCACAAAGTTTATGAAATAAAGAAATGTTTGAATCTTGTTGTCTTGAATTAAAGATGTGTGTAGTCCTTTAAATCTTGTGTTCTTAAATTTGCCTAGAAGAATGTTGGAACTGAAAAATATACTAAAGATAGAAAGAGACACTCTTTTTGGGACAGTCCAAAAATGAAAGACACTTAAAAAATCAGGATGGAGGGAGTACAAAACAATTCCAAGTACACTGTTAAGGAGCTTCAAGGATAATTATTATAATCTTGAAATATATTTAAAGGGCCATCCAAGTCATAAATATCGATTTTTTTCCGTCCTCAAGCCATACTTATTAGCCATTGCATAGTAGTTCATTATCCTTCTACCTTCCACAATATCAGAAAATGTCATATCCTTCTTCAACTCCCTTATAATTGTCCAGCCTACTAATAACCTCGATTTCTTCATCATACTCCAAATTGGCAAATCAAAAAATTATAGTCCTCAATAACATGATCATTATCAGATGCTACCTCAACGTCTACATGATATGTTTCGATATGATGCAAAATTATATGTTTATGGATGATCAAATTTGTCTCATCTGCAGCAAACAAGTGTATAACTCCCAACTCATGGCGAATAAGGTTCTGCAAAGCCCTAAAATACCATCATCTCCATCAATAATATAGTCCCTACTCGGGTCTGGCAACTAACAATTGTTTGACCTTAATAAACCTTAGCTCTTTCTTGAACTCTTCCACAAAAATCTTTATAAGAAAGCAGGTTTTTGGTCAAACCTATGACAGAAGTGCGCCAGTTTCTTACTATTGAATAAGTGAGGAGAAAAGACTCATTCACCCCATAGTGGAAACACACTTTCTCTTTGTCAATCATGCTTCGGTAAAGATCACATGCCAAGGAAAAAATGAGGGACCACATCAGCAACATACATAGGCTATACAAAATCTGTGAATATAAAAACTCTAGAATGACACAACACATTTTGGGACCATAAAAGAAAGGAACAGAACCATAAAAACACTGAAACTTTACATATTAAGCTATGATTTACATACTCAAAAATAAGAAACTCCACATTAACAGATTCTCTACCCACCACCTTAAATAATTATTTAAATAGAGAACCAGCCTTTATGAGCTATTCCTTTTGTCCTTCTCCCTCATAAACAAGCTATGAAGTCAACTTTGGCCATAGTTTTTTTCCCGATCAATTACCAAAAGAACTGAGTTAAGGCTTAAGGATTTGGGTCTGGTCGAGTAAGGGAATTGAGGAGAATGGATTATGGGTTTGGGCAAAAAGAGTCTGGGTCGGGTTCTAATATGGAGCGGTTAAAGCTAATTGGCATGGGTATTAAATAAGTGGGACATGTTAGTGATGTGACCTGTTTAATTTGATGTTATTGTCCAATTCAGTATTTTTAAACCAAAAATTGGTATTCAAACTGGCTATTTGAGCTGTTAGTGGTATGTGGCATGAATGTGCAAATTGTGTCATGGCAATGACAAAAATATGCACAACTAGTAATGAGTGGCACAGCAGAGCCATTTCTGATAGTTCAATGGTATATTTTTTCTTTTCTTCTTTTATTAAAAGACATGGGCAATCTCGTCATTTAGGTGGATTTAGTGGTCATGCTAATATGCGGAGTGGTAACCAAGGTAGGTCTCGTAAATCCTATTGGGCCTCAGTTTTGATTAAGAAATCAAATGCTGGGATTGCAAGCAAGTAGGTCACAAGAAAGCTGCTTGTCCCTGAACAAGAAACCAGGTGACCATTTTTATGAACCGAACCATAGCACTACCATCAAGGGCTTAACATGATTGGCCCGATGGTATCAAATCCCTATTTATGGATGTATTCTACACAAATCATTTTTCCATATAGGACACTAAATGCGTTACATTCTTGAATAGTTGAAACTCTTTCTTAGGACTGTTGTTAAGGTCTCGAAGGCAATTTCATTTGATAAAAAATTGGATATTCTTTTTGTATTTCCATCGAAGATGGGTTCATTTCTATAATACCATTGTTGAGGAGAACAACTTGTTCTTGAAATCATCATGGCTAAAAGATGAACATAATAATGGGTTCGAGAAAGAAGGAAAGTTGAGAACCCATCTGAGGTGGAAAAATTGTGGGCAAGTAAAATGAATAAAGTGAACTCATTTAGTTCAATGATGGGTTTGATGACTTTGTCCCAATTTTTTTTAATCTTGTTTGTTGGACTATATTCCCGTTGTGTTTATGAAATGGGTTTGTCATCCAATGTTACTTGGTCGAGTCTAAAGGAATTACAAGCATATAATGGTAGTCGATGTGAAGGAAAATACTGTAATTGACCTAAGCCAGTCAAAACATTTCCTACAAAAATTTTGATTGATGAGTTAGCTTTTGTTTAAATAACTCAGTTGTGTTTCTGATAATTGCTTTTGAGTATTGGTGTTAAAAAGGGGAAAAGAAAAAAGAATGAGATGTGGCAATCATTGAAGATGTGAAGGCGACCATAGCAGGTCGGAGAGGATGAGAAACAAAAGGAATTAATATGAGTTATATCAACCAAAAATTATGTTTTCATGCACTTAAAATTTAGGTGCATGACACCTATCATGTTGGTGATAGGCGTGCACGAGATATAATTTTGTCAAGTGAAAGTGTTCAAATAATCATTATGAAAGTTAGTGGTGGTGTCTATCTGAAAATTGATGCCATGTTTGAGGTATCTCTAGATTTGCCCATGATATTTGTTGTTGGCTAATATAAAAAGAATTAGAAATCCCATTCCAACATCTTCAGGGGGGAAAACAATATCAGCATCCAAGTTTGAATTCGAAATGGACCTTATTTTCTCTGTTTTAATATGGGATGAAGATGAATCACCATGCTTACCTTGCAACAGAGGAGAAAGTTGCTCTAACTCAATCAGATGAAATCAAGTTATCAGTTGCTTTCATCTTCATGTGAAAAACGGAGAACTATCTGTTATGAGTACTTGGCTTCTTATGAAAAGAGTTCCAATAGACAGCTGGCCTGAGAATTTTGAACTTCAGATTCTTCTTGGGGTAGTTTTGGAATTCCTTATTAATAAAGCCTTGCTGGATAGTTATATTGTTTGCATAATCTAAATCAGGTTCTCTTTACCCCTTTACCAATATTTCCATCAGTTCATTTTTTCCTTTTTTTTTTTTGGTAATCATGGTGTTTGCTTCAGTTTGTGCACACGTTGACTAATTCACGGGGCACATACTATCTTTCACCAGCACAAGTATCAGGACCAAGGCTTGGATAGATGGGAAGAAAGCGCCTAGGACTTTTATGTCCACTGTCATTTCGACCACATCATTGACCATTAGGCCCACACCCTTGCATACATATTACCGGTAGTGCTATATGTGGTTATTTTGAAATCCGTTGGATAACAATTTGTGATACTTAAATTGTCAATGTCGCTAATCTCTGTATTAGTTTGGTTCTCCTTTTATAATTTTGTTACATATTGCACTACAAGCTGATTCAGAGGTCCAGGTTCTGCTTGACTTTAAAGCTTGTTCTTGGCAATTATTTGTGTTTTCGTAATTTAGTCTTGTACAAAAATAGTTGTCTTGCTGGTATATGACTCTGATTTTATAGTTGTGTTCTTTAACAAGTTCATGTCAATATAGCAGTTTCCTTTACTTCAGCTCTTTTTCTTTATTCAGCTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAAGTAATAGCTACATACAATTATCTGCTTTAGCTCTGCTTTACATCCACATTGTTTTCTATAATTTACTTATGATTTCTTCTTCTCTTGCTAATTCATTTTGGTAGGGACTGGCTGAATCCAGAACTCTTCAAGTGAGATGTCTACAGAGAGGATGACACAATTATCCTGTTGTTACCGCGTGTGATATTTGGTGTTTATCCCTCCCGCGTAGTTGCTGAGTTT</genome_strand>
        <mrna_strand>CATCAAAATGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAACGGTGTTCTTCTTGGCCGAATCTCCGGCAACGGCGACAACGTTGAAATTGTCGAATCCGTTCCGTTTTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG..........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCTGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG.......................................................................................................TTGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAAGGCAAAGACAGGAGTCCTGTTATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCTGGGAAATGGAAGGACATCGTGGATTTTGATGACCATCTGGATGACATTAGCAA........................................................................................................GGACTGGCTGAATCCAGAACTCTTCAAGTGAAATGTCTAC-G-GAGGATGACACAATTATCATGTTGTTACCGCGTGTGGTATTTGGTGTTTATCCCTCCCGCGCAGTTGCTGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E617018" ref_strand="+" ref_description="SGN-E617018 [90491]">
      <seq>caagtacatcggagtagtcaaagacgcagtcagattcgatcgggcggggcacggaatagggatctcatagtgattgtttgaagagatggttgggaatcgaattacgaagaatccatccaaaattgctaacttaagttaattctttcattgcctttaagcccagaatttcctcggccaccggtgtcctccttggccgattctccggcaacggcgacaacgttgaaattgtcgaatccgttccgtttttccactctcaaattggtttacttccaccactcgaaatttcacttatcatgattgaggagtactatgctgataaaggtttgagtattgtgggttattttcacgcaaatgaaagatctgatgattttgaggtcggaaatgtggccaagaatattggtgatcatatctacaaatatttccctcaagctgctttacttctgttggataacaagaagcttgaagctttactgaaggaaggcaaagacaggagtcctgttatgcagctttacactaaggaatcatctaggagctggaaactagcgggagctgatgcaagcggctctctgaaaatcaaagaaccatctgcaaatattgttcttctagactatgtctcatctgggaaatggaaggacatcgtggattttgatgaccatctggatgacattagcaaggactggctgaaatccagaactcttcaagtgaaaatgtctacggaggatgacacaattatcatgttgttaccgcgtgtgggtatttgggtggtttatccccctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21437" stop="15018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21139" g_stop="20845" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.817"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20514" g_stop="20368" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="443" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20264" g_stop="20202" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="506" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20201" i_stop="15668" i_length="4534">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15667" g_stop="15501" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="673" r_length="167" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15500" i_stop="15397" i_length="104">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15396" g_stop="15295" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="778" r_length="105" r_score="0.824"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E617018" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E617018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21139" e_stop="20845"/>
          <exon e_start="20514" e_stop="20368"/>
          <exon e_start="20264" e_stop="20202"/>
          <exon e_start="15667" e_stop="15501"/>
          <exon e_start="15396" e_stop="15295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACG-AG-ATTCAT-CAAAACGCCTACATCAAGTTAA-TCCTTCA-TGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATGGTCAGTTCCCCTCCCTTTGAATTAAAGTGGATTTTAGTAGCGCAATTGAAGTATACTAATTGTTTTGATAATGAAATTGAGCATTAGGTTTGTATTTTGTAGTAACTGAAGTACACTTATAATGAAATTGAAGTACACTAATTGCTCGGGCTGGGCTCAGCTTGATGCCCAGGCCTAATTACAGGTTAATACTTGTAGATGTGGGTTCGTATCCACTATATCTGTAGGATAATAGATTTGAACTGAGTATAAAGGGATGTTTTGGAGAATTTTCAACTAAATATGTACCATGCCTTCTAACTTGTTTGGAAGTCTCTTTTATTTGGATAGATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTGGTACCCTTTTTTCTTACTCAACATAGTTCTAATTCAAAATGTTCCAATCTTTAAATTGTAAGTTAACAAAGTGCTTGAGCTTAATTTGCCTTGTATTTTACAGATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAGGTATGCACATATCATTTTAATGAGCTATTGGCTTTTGAACTAAATTCAGTCTTTTTATTCTTCTTCATATTTTTATCCGGTCTAGTTAATTATTGATGCCAAATTCCAGTAATTATGCCATTCAAATTTGAACTTTTGGTGCATTAAGCATTAGTGACTACGTGACCAACTTCATATATATAGTTTATTCTTCCTTGATAATCATTCTAGCTGTCTTATGGTTTCTCTTCTCTATCTGTCCCATTTTTCACGTGGTGATGAAGTTAGTTGGAATAATGTGGTTACTTTAGTTCTTTTGTTTCTATTTAATGCGGAAGGTTATTAGTTCTTTCCATTTACTAGAGAACTTCGTGTTGTTATTTGACGACATAGAACTCTGTCCTTTTGTTTTGATAATTATGGGAGTCCAGGAAATCAAGTTCACATCTAAGTCTGTATGTCCACAATAATCTTAATGTTCTATTTCTGCTGGGTGAACAAATGAAAATCCTTGTTTTATATTCTATCTGCGTTGTTTCTAATTAATCCAGTTGGCACGAAGGAAAAGCAGTTGATAATCCTACTTCTCTGTGCAAAGGGTAATGAACTACTATGCAATGGCTAATGGGTATGACTTGAGGATTGTAAAAACTGATCCCACTAGGACTTGGTATATTTGTGAACTTGGAATGTCCTTTTAGATGTCCTATCTCACAGGATAAAATGAGTGTTGGGTTGAGTAACAAAACTTTGAAATCAGAACATAATTGTGATCCTTGTTACAAAAACCCAAGAGAACTCATTAGCACAATACTTGAAGAAAGAATAACTCCCTCTGTCCCAATTTAAGTGTCTTAGTTTAATTGTCCACAAAGTTTATGAAATAAAGAAATGTTTGAATCTTGTTGTCTTGAATTAAAGATGTGTGTAGTCCTTTAAATCTTGTGTTCTTAAATTTGCCTAGAAGAATGTTGGAACTGAAAAATATACTAAAGATAGAAAGAGACACTCTTTTTGGGACAGTCCAAAAATGAAAGACACTTAAAAAATCAGGATGGAGGGAGTACAAAACAATTCCAAGTACACTGTTAAGGAGCTTCAAGGATAATTATTATAATCTTGAAATATATTTAAAGGGCCATCCAAGTCATAAATATCGATTTTTTTCCGTCCTCAAGCCATACTTATTAGCCATTGCATAGTAGTTCATTATCCTTCTACCTTCCACAATATCAGAAAATGTCATATCCTTCTTCAACTCCCTTATAATTGTCCAGCCTACTAATAACCTCGATTTCTTCATCATACTCCAAATTGGCAAATCAAAAAATTATAGTCCTCAATAACATGATCATTATCAGATGCTACCTCAACGTCTACATGATATGTTTCGATATGATGCAAAATTATATGTTTATGGATGATCAAATTTGTCTCATCTGCAGCAAACAAGTGTATAACTCCCAACTCATGGCGAATAAGGTTCTGCAAAGCCCTAAAATACCATCATCTCCATCAATAATATAGTCCCTACTCGGGTCTGGCAACTAACAATTGTTTGACCTTAATAAACCTTAGCTCTTTCTTGAACTCTTCCACAAAAATCTTTATAAGAAAGCAGGTTTTTGGTCAAACCTATGACAGAAGTGCGCCAGTTTCTTACTATTGAATAAGTGAGGAGAAAAGACTCATTCACCCCATAGTGGAAACACACTTTCTCTTTGTCAATCATGCTTCGGTAAAGATCACATGCCAAGGAAAAAATGAGGGACCACATCAGCAACATACATAGGCTATACAAAATCTGTGAATATAAAAACTCTAGAATGACACAACACATTTTGGGACCATAAAAGAAAGGAACAGAACCATAAAAACACTGAAACTTTACATATTAAGCTATGATTTACATACTCAAAAATAAGAAACTCCACATTAACAGATTCTCTACCCACCACCTTAAATAATTATTTAAATAGAGAACCAGCCTTTATGAGCTATTCCTTTTGTCCTTCTCCCTCATAAACAAGCTATGAAGTCAACTTTGGCCATAGTTTTTTTCCCGATCAATTACCAAAAGAACTGAGTTAAGGCTTAAGGATTTGGGTCTGGTCGAGTAAGGGAATTGAGGAGAATGGATTATGGGTTTGGGCAAAAAGAGTCTGGGTCGGGTTCTAATATGGAGCGGTTAAAGCTAATTGGCATGGGTATTAAATAAGTGGGACATGTTAGTGATGTGACCTGTTTAATTTGATGTTATTGTCCAATTCAGTATTTTTAAACCAAAAATTGGTATTCAAACTGGCTATTTGAGCTGTTAGTGGTATGTGGCATGAATGTGCAAATTGTGTCATGGCAATGACAAAAATATGCACAACTAGTAATGAGTGGCACAGCAGAGCCATTTCTGATAGTTCAATGGTATATTTTTTCTTTTCTTCTTTTATTAAAAGACATGGGCAATCTCGTCATTTAGGTGGATTTAGTGGTCATGCTAATATGCGGAGTGGTAACCAAGGTAGGTCTCGTAAATCCTATTGGGCCTCAGTTTTGATTAAGAAATCAAATGCTGGGATTGCAAGCAAGTAGGTCACAAGAAAGCTGCTTGTCCCTGAACAAGAAACCAGGTGACCATTTTTATGAACCGAACCATAGCACTACCATCAAGGGCTTAACATGATTGGCCCGATGGTATCAAATCCCTATTTATGGATGTATTCTACACAAATCATTTTTCCATATAGGACACTAAATGCGTTACATTCTTGAATAGTTGAAACTCTTTCTTAGGACTGTTGTTAAGGTCTCGAAGGCAATTTCATTTGATAAAAAATTGGATATTCTTTTTGTATTTCCATCGAAGATGGGTTCATTTCTATAATACCATTGTTGAGGAGAACAACTTGTTCTTGAAATCATCATGGCTAAAAGATGAACATAATAATGGGTTCGAGAAAGAAGGAAAGTTGAGAACCCATCTGAGGTGGAAAAATTGTGGGCAAGTAAAATGAATAAAGTGAACTCATTTAGTTCAATGATGGGTTTGATGACTTTGTCCCAATTTTTTTTAATCTTGTTTGTTGGACTATATTCCCGTTGTGTTTATGAAATGGGTTTGTCATCCAATGTTACTTGGTCGAGTCTAAAGGAATTACAAGCATATAATGGTAGTCGATGTGAAGGAAAATACTGTAATTGACCTAAGCCAGTCAAAACATTTCCTACAAAAATTTTGATTGATGAGTTAGCTTTTGTTTAAATAACTCAGTTGTGTTTCTGATAATTGCTTTTGAGTATTGGTGTTAAAAAGGGGAAAAGAAAAAAGAATGAGATGTGGCAATCATTGAAGATGTGAAGGCGACCATAGCAGGTCGGAGAGGATGAGAAACAAAAGGAATTAATATGAGTTATATCAACCAAAAATTATGTTTTCATGCACTTAAAATTTAGGTGCATGACACCTATCATGTTGGTGATAGGCGTGCACGAGATATAATTTTGTCAAGTGAAAGTGTTCAAATAATCATTATGAAAGTTAGTGGTGGTGTCTATCTGAAAATTGATGCCATGTTTGAGGTATCTCTAGATTTGCCCATGATATTTGTTGTTGGCTAATATAAAAAGAATTAGAAATCCCATTCCAACATCTTCAGGGGGGAAAACAATATCAGCATCCAAGTTTGAATTCGAAATGGACCTTATTTTCTCTGTTTTAATATGGGATGAAGATGAATCACCATGCTTACCTTGCAACAGAGGAGAAAGTTGCTCTAACTCAATCAGATGAAATCAAGTTATCAGTTGCTTTCATCTTCATGTGAAAAACGGAGAACTATCTGTTATGAGTACTTGGCTTCTTATGAAAAGAGTTCCAATAGACAGCTGGCCTGAGAATTTTGAACTTCAGATTCTTCTTGGGGTAGTTTTGGAATTCCTTATTAATAAAGCCTTGCTGGATAGTTATATTGTTTGCATAATCTAAATCAGGTTCTCTTTACCCCTTTACCAATATTTCCATCAGTTCATTTTTTCCTTTTTTTTTTTTGGTAATCATGGTGTTTGCTTCAGTTTGTGCACACGTTGACTAATTCACGGGGCACATACTATCTTTCACCAGCACAAGTATCAGGACCAAGGCTTGGATAGATGGGAAGAAAGCGCCTAGGACTTTTATGTCCACTGTCATTTCGACCACATCATTGACCATTAGGCCCACACCCTTGCATACATATTACCGGTAGTGCTATATGTGGTTATTTTGAAATCCGTTGGATAACAATTTGTGATACTTAAATTGTCAATGTCGCTAATCTCTGTATTAGTTTGGTTCTCCTTTTATAATTTTGTTACATATTGCACTACAAGCTGATTCAGAGGTCCAGGTTCTGCTTGACTTTAAAGCTTGTTCTTGGCAATTATTTGTGTTTTCGTAATTTAGTCTTGTACAAAAATAGTTGTCTTGCTGGTATATGACTCTGATTTTATAGTTGTGTTCTTTAACAAGTTCATGTCAATATAGCAGTTTCCTTTACTTCAGCTCTTTTTCTTTATTCAGCTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAAGTAATAGCTACATACAATTATCTGCTTTAGCTCTGCTTTACATCCACATTGTTTTCTATAATTTACTTATGATTTCTTCTTCTCTTGCTAATTCATTTTGGTAGGGACTGGCTG-AATCCAGAACTCTTCAAGTG-AGATGTCTACAGAGAGGATGACACAATTATCCTGTTGTTACCGCGTGT-GATATTT-GGT-GTTTATCCCTCCCG</genome_strand>
        <mrna_strand>CAAGTACATCGGAGTAGTCAAAGACGCAG--TCAGATTCGATCGGGCGGGGCACGGAATAGGGA-TCTCATAGTGATTGTTTGAAGAGATGGTTGG-GAATCGAATTACGAAGAATCCATCCAAAATTGCTAACTTAAGTTAATTCTTTCATTGCCTTTAAGCCCAGAATTTCCTCGGCCACCGGTGTCCTCCTTGGCCGATTCTCCGGCAACGGCGACAACGTTGAAATTGTCGAATCCGTTCCGTTTTTCCACTCTCAAATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG..........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCTGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG.......................................................................................................TTGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAAGGCAAAGACAGGAGTCCTGTTATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCTGGGAAATGGAAGGACATCGTGGATTTTGATGACCATCTGGATGACATTAGCAA........................................................................................................GGACTGGCTGAAATCCAGAACTCTTCAAGTGAAAATGTCTAC-G-GAGGATGACACAATTATCATGTTGTTACCGCGTGTGGGTATTTGGGTGGTTTATCCCCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E615379" ref_strand="+" ref_description="SGN-E615379 [65177]">
      <seq>gtacatcggagtagtcaaagacgcagtcagattcgatcggccggcagccggaataggggttctcagagtgattgtttgaagagatgggtggcgaatcgaattacgagattcatcaaaatgcctacatcaagttaatccttcatgcccttaagcacaagacttcctccgtcaacggtgttcttcttggccgaatctccggcaacggcgacaacgttgaaattgtcgaatccgttccgttgttccactctcagattggtttacttccaccactcgaaatttcacttatcatgattgaggagtactatgttgataaaggtttgagtattgtgggttattttcacgcaaatgaaagatctgatgattttgaggtcggaaatgtggccaagaatattggtgatcatatctacaaatatttccctcaagctgctttacttctgttggataacaagaagcttgaagctttactgaaggagggcaaagacaggagtcctgttatgcagctttacattaaggaatcatctaggagctggaaactagcgggagctgatgcaagcggctctctgaaaatcaaagaaccatctgcaaatattgttcttctagactatgtctcatctgggaaatggaaggacatcgtggatttcgatgaccatctggatgacattagcaaggactggctgaatcccagaactcttcaagtgaaatgtctacggaggatgacacaaatatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21433" stop="15034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21136" g_stop="20845" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20514" g_stop="20368" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="437" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20264" g_stop="20202" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="500" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20201" i_stop="15668" i_length="4534">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15667" g_stop="15501" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="667" r_length="167" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15500" i_stop="15397" i_length="104">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15396" g_stop="15334" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="729" r_length="62" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E615379" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21136" e_stop="20845"/>
          <exon e_start="20514" e_stop="20368"/>
          <exon e_start="20264" e_stop="20202"/>
          <exon e_start="15667" e_stop="15501"/>
          <exon e_start="15396" e_stop="15334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATGGTCAGTTCCCCTCCCTTTGAATTAAAGTGGATTTTAGTAGCGCAATTGAAGTATACTAATTGTTTTGATAATGAAATTGAGCATTAGGTTTGTATTTTGTAGTAACTGAAGTACACTTATAATGAAATTGAAGTACACTAATTGCTCGGGCTGGGCTCAGCTTGATGCCCAGGCCTAATTACAGGTTAATACTTGTAGATGTGGGTTCGTATCCACTATATCTGTAGGATAATAGATTTGAACTGAGTATAAAGGGATGTTTTGGAGAATTTTCAACTAAATATGTACCATGCCTTCTAACTTGTTTGGAAGTCTCTTTTATTTGGATAGATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTGGTACCCTTTTTTCTTACTCAACATAGTTCTAATTCAAAATGTTCCAATCTTTAAATTGTAAGTTAACAAAGTGCTTGAGCTTAATTTGCCTTGTATTTTACAGATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAGGTATGCACATATCATTTTAATGAGCTATTGGCTTTTGAACTAAATTCAGTCTTTTTATTCTTCTTCATATTTTTATCCGGTCTAGTTAATTATTGATGCCAAATTCCAGTAATTATGCCATTCAAATTTGAACTTTTGGTGCATTAAGCATTAGTGACTACGTGACCAACTTCATATATATAGTTTATTCTTCCTTGATAATCATTCTAGCTGTCTTATGGTTTCTCTTCTCTATCTGTCCCATTTTTCACGTGGTGATGAAGTTAGTTGGAATAATGTGGTTACTTTAGTTCTTTTGTTTCTATTTAATGCGGAAGGTTATTAGTTCTTTCCATTTACTAGAGAACTTCGTGTTGTTATTTGACGACATAGAACTCTGTCCTTTTGTTTTGATAATTATGGGAGTCCAGGAAATCAAGTTCACATCTAAGTCTGTATGTCCACAATAATCTTAATGTTCTATTTCTGCTGGGTGAACAAATGAAAATCCTTGTTTTATATTCTATCTGCGTTGTTTCTAATTAATCCAGTTGGCACGAAGGAAAAGCAGTTGATAATCCTACTTCTCTGTGCAAAGGGTAATGAACTACTATGCAATGGCTAATGGGTATGACTTGAGGATTGTAAAAACTGATCCCACTAGGACTTGGTATATTTGTGAACTTGGAATGTCCTTTTAGATGTCCTATCTCACAGGATAAAATGAGTGTTGGGTTGAGTAACAAAACTTTGAAATCAGAACATAATTGTGATCCTTGTTACAAAAACCCAAGAGAACTCATTAGCACAATACTTGAAGAAAGAATAACTCCCTCTGTCCCAATTTAAGTGTCTTAGTTTAATTGTCCACAAAGTTTATGAAATAAAGAAATGTTTGAATCTTGTTGTCTTGAATTAAAGATGTGTGTAGTCCTTTAAATCTTGTGTTCTTAAATTTGCCTAGAAGAATGTTGGAACTGAAAAATATACTAAAGATAGAAAGAGACACTCTTTTTGGGACAGTCCAAAAATGAAAGACACTTAAAAAATCAGGATGGAGGGAGTACAAAACAATTCCAAGTACACTGTTAAGGAGCTTCAAGGATAATTATTATAATCTTGAAATATATTTAAAGGGCCATCCAAGTCATAAATATCGATTTTTTTCCGTCCTCAAGCCATACTTATTAGCCATTGCATAGTAGTTCATTATCCTTCTACCTTCCACAATATCAGAAAATGTCATATCCTTCTTCAACTCCCTTATAATTGTCCAGCCTACTAATAACCTCGATTTCTTCATCATACTCCAAATTGGCAAATCAAAAAATTATAGTCCTCAATAACATGATCATTATCAGATGCTACCTCAACGTCTACATGATATGTTTCGATATGATGCAAAATTATATGTTTATGGATGATCAAATTTGTCTCATCTGCAGCAAACAAGTGTATAACTCCCAACTCATGGCGAATAAGGTTCTGCAAAGCCCTAAAATACCATCATCTCCATCAATAATATAGTCCCTACTCGGGTCTGGCAACTAACAATTGTTTGACCTTAATAAACCTTAGCTCTTTCTTGAACTCTTCCACAAAAATCTTTATAAGAAAGCAGGTTTTTGGTCAAACCTATGACAGAAGTGCGCCAGTTTCTTACTATTGAATAAGTGAGGAGAAAAGACTCATTCACCCCATAGTGGAAACACACTTTCTCTTTGTCAATCATGCTTCGGTAAAGATCACATGCCAAGGAAAAAATGAGGGACCACATCAGCAACATACATAGGCTATACAAAATCTGTGAATATAAAAACTCTAGAATGACACAACACATTTTGGGACCATAAAAGAAAGGAACAGAACCATAAAAACACTGAAACTTTACATATTAAGCTATGATTTACATACTCAAAAATAAGAAACTCCACATTAACAGATTCTCTACCCACCACCTTAAATAATTATTTAAATAGAGAACCAGCCTTTATGAGCTATTCCTTTTGTCCTTCTCCCTCATAAACAAGCTATGAAGTCAACTTTGGCCATAGTTTTTTTCCCGATCAATTACCAAAAGAACTGAGTTAAGGCTTAAGGATTTGGGTCTGGTCGAGTAAGGGAATTGAGGAGAATGGATTATGGGTTTGGGCAAAAAGAGTCTGGGTCGGGTTCTAATATGGAGCGGTTAAAGCTAATTGGCATGGGTATTAAATAAGTGGGACATGTTAGTGATGTGACCTGTTTAATTTGATGTTATTGTCCAATTCAGTATTTTTAAACCAAAAATTGGTATTCAAACTGGCTATTTGAGCTGTTAGTGGTATGTGGCATGAATGTGCAAATTGTGTCATGGCAATGACAAAAATATGCACAACTAGTAATGAGTGGCACAGCAGAGCCATTTCTGATAGTTCAATGGTATATTTTTTCTTTTCTTCTTTTATTAAAAGACATGGGCAATCTCGTCATTTAGGTGGATTTAGTGGTCATGCTAATATGCGGAGTGGTAACCAAGGTAGGTCTCGTAAATCCTATTGGGCCTCAGTTTTGATTAAGAAATCAAATGCTGGGATTGCAAGCAAGTAGGTCACAAGAAAGCTGCTTGTCCCTGAACAAGAAACCAGGTGACCATTTTTATGAACCGAACCATAGCACTACCATCAAGGGCTTAACATGATTGGCCCGATGGTATCAAATCCCTATTTATGGATGTATTCTACACAAATCATTTTTCCATATAGGACACTAAATGCGTTACATTCTTGAATAGTTGAAACTCTTTCTTAGGACTGTTGTTAAGGTCTCGAAGGCAATTTCATTTGATAAAAAATTGGATATTCTTTTTGTATTTCCATCGAAGATGGGTTCATTTCTATAATACCATTGTTGAGGAGAACAACTTGTTCTTGAAATCATCATGGCTAAAAGATGAACATAATAATGGGTTCGAGAAAGAAGGAAAGTTGAGAACCCATCTGAGGTGGAAAAATTGTGGGCAAGTAAAATGAATAAAGTGAACTCATTTAGTTCAATGATGGGTTTGATGACTTTGTCCCAATTTTTTTTAATCTTGTTTGTTGGACTATATTCCCGTTGTGTTTATGAAATGGGTTTGTCATCCAATGTTACTTGGTCGAGTCTAAAGGAATTACAAGCATATAATGGTAGTCGATGTGAAGGAAAATACTGTAATTGACCTAAGCCAGTCAAAACATTTCCTACAAAAATTTTGATTGATGAGTTAGCTTTTGTTTAAATAACTCAGTTGTGTTTCTGATAATTGCTTTTGAGTATTGGTGTTAAAAAGGGGAAAAGAAAAAAGAATGAGATGTGGCAATCATTGAAGATGTGAAGGCGACCATAGCAGGTCGGAGAGGATGAGAAACAAAAGGAATTAATATGAGTTATATCAACCAAAAATTATGTTTTCATGCACTTAAAATTTAGGTGCATGACACCTATCATGTTGGTGATAGGCGTGCACGAGATATAATTTTGTCAAGTGAAAGTGTTCAAATAATCATTATGAAAGTTAGTGGTGGTGTCTATCTGAAAATTGATGCCATGTTTGAGGTATCTCTAGATTTGCCCATGATATTTGTTGTTGGCTAATATAAAAAGAATTAGAAATCCCATTCCAACATCTTCAGGGGGGAAAACAATATCAGCATCCAAGTTTGAATTCGAAATGGACCTTATTTTCTCTGTTTTAATATGGGATGAAGATGAATCACCATGCTTACCTTGCAACAGAGGAGAAAGTTGCTCTAACTCAATCAGATGAAATCAAGTTATCAGTTGCTTTCATCTTCATGTGAAAAACGGAGAACTATCTGTTATGAGTACTTGGCTTCTTATGAAAAGAGTTCCAATAGACAGCTGGCCTGAGAATTTTGAACTTCAGATTCTTCTTGGGGTAGTTTTGGAATTCCTTATTAATAAAGCCTTGCTGGATAGTTATATTGTTTGCATAATCTAAATCAGGTTCTCTTTACCCCTTTACCAATATTTCCATCAGTTCATTTTTTCCTTTTTTTTTTTTGGTAATCATGGTGTTTGCTTCAGTTTGTGCACACGTTGACTAATTCACGGGGCACATACTATCTTTCACCAGCACAAGTATCAGGACCAAGGCTTGGATAGATGGGAAGAAAGCGCCTAGGACTTTTATGTCCACTGTCATTTCGACCACATCATTGACCATTAGGCCCACACCCTTGCATACATATTACCGGTAGTGCTATATGTGGTTATTTTGAAATCCGTTGGATAACAATTTGTGATACTTAAATTGTCAATGTCGCTAATCTCTGTATTAGTTTGGTTCTCCTTTTATAATTTTGTTACATATTGCACTACAAGCTGATTCAGAGGTCCAGGTTCTGCTTGACTTTAAAGCTTGTTCTTGGCAATTATTTGTGTTTTCGTAATTTAGTCTTGTACAAAAATAGTTGTCTTGCTGGTATATGACTCTGATTTTATAGTTGTGTTCTTTAACAAGTTCATGTCAATATAGCAGTTTCCTTTACTTCAGCTCTTTTTCTTTATTCAGCTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAAGTAATAGCTACATACAATTATCTGCTTTAGCTCTGCTTTACATCCACATTGTTTTCTATAATTTACTTATGATTTCTTCTTCTCTTGCTAATTCATTTTGGTAGGGACTGGCTGAAT-CCAGAACTCTTCAAGTGAGATGTCTACAGAGAGGATGACACAATTATCCT</genome_strand>
        <mrna_strand>GTACATCGGAGTAGTCAAAGACGCAG--TCAGATTCGATCGGCCGGCAGCCGGAATAGGGGTTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAATGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAACGGTGTTCTTCTTGGCCGAATCTCCGGCAACGGCGACAACGTTGAAATTGTCGAATCCGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG..........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGTACTATGTTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCTGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG.......................................................................................................TTGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTACATTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCTGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAA........................................................................................................GGACTGGCTGAATCCCAGAACTCTTCAAGTGAAATGTCTAC-G-GAGGATGACACAAATATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E448593" ref_strand="+" ref_description="SGN-E448593 [cSTS-3-L23]">
      <seq>ggagtagtcaaagacgcagtctgattggatcggccggcagccggaatatggattctcagagtgattgtttgaagagatgggtggcgaatcgaattacgagattcatcaaaatgcctacatcaagttaaaccttcatgcccttaagcacaagacttcctccgtcaacggtgttcttcttggccgaatctccggcaacggtgacaacgttgaaattgtcgaatccgttccgttgttccactctcagattggtttacttccaccactcgaaattgcacttatcatgattgaggagtactatgctgataaaggtttgagtattgtgggttattttcacgcaaatgaaagatctgatgattttgaggtcggaaatgtggccaagaatattggtgatcatatctacaaatatttccctcaagctgctttacttgctggtggataacaagaagcttgaagctttactgaaggagggcaaagacaggagtcctgttatgcagctttacactaaggaatcatctaagagctggaaactagcgggagctgatgcaagcggctctctgaaaatcaaagaaccatctgcaaatattgctcttctagactatgtctcatctgggaaatggaaggacatcgtggattctgatgaccatctggatgacattagcaaggactggctgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21429" stop="15188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21129" g_stop="20845" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20514" g_stop="20368" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="431" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20264" g_stop="20202" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="494" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20201" i_stop="15668" i_length="4534">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15667" g_stop="15501" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="661" r_length="167" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15500" i_stop="15397" i_length="104">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15396" g_stop="15383" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="675" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E448593" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21129" e_stop="20845"/>
          <exon e_start="20514" e_stop="20368"/>
          <exon e_start="20264" e_stop="20202"/>
          <exon e_start="15667" e_stop="15501"/>
          <exon e_start="15396" e_stop="15383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATGGTCAGTTCCCCTCCCTTTGAATTAAAGTGGATTTTAGTAGCGCAATTGAAGTATACTAATTGTTTTGATAATGAAATTGAGCATTAGGTTTGTATTTTGTAGTAACTGAAGTACACTTATAATGAAATTGAAGTACACTAATTGCTCGGGCTGGGCTCAGCTTGATGCCCAGGCCTAATTACAGGTTAATACTTGTAGATGTGGGTTCGTATCCACTATATCTGTAGGATAATAGATTTGAACTGAGTATAAAGGGATGTTTTGGAGAATTTTCAACTAAATATGTACCATGCCTTCTAACTTGTTTGGAAGTCTCTTTTATTTGGATAGATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTT-CTGGTACCCTTTTTTCTTACTCAACATAGTTCTAATTCAAAATGTTCCAATCTTTAAATTGTAAGTTAACAAAGTGCTTGAGCTTAATTTGCCTTGTATTTTACAGATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAGGTATGCACATATCATTTTAATGAGCTATTGGCTTTTGAACTAAATTCAGTCTTTTTATTCTTCTTCATATTTTTATCCGGTCTAGTTAATTATTGATGCCAAATTCCAGTAATTATGCCATTCAAATTTGAACTTTTGGTGCATTAAGCATTAGTGACTACGTGACCAACTTCATATATATAGTTTATTCTTCCTTGATAATCATTCTAGCTGTCTTATGGTTTCTCTTCTCTATCTGTCCCATTTTTCACGTGGTGATGAAGTTAGTTGGAATAATGTGGTTACTTTAGTTCTTTTGTTTCTATTTAATGCGGAAGGTTATTAGTTCTTTCCATTTACTAGAGAACTTCGTGTTGTTATTTGACGACATAGAACTCTGTCCTTTTGTTTTGATAATTATGGGAGTCCAGGAAATCAAGTTCACATCTAAGTCTGTATGTCCACAATAATCTTAATGTTCTATTTCTGCTGGGTGAACAAATGAAAATCCTTGTTTTATATTCTATCTGCGTTGTTTCTAATTAATCCAGTTGGCACGAAGGAAAAGCAGTTGATAATCCTACTTCTCTGTGCAAAGGGTAATGAACTACTATGCAATGGCTAATGGGTATGACTTGAGGATTGTAAAAACTGATCCCACTAGGACTTGGTATATTTGTGAACTTGGAATGTCCTTTTAGATGTCCTATCTCACAGGATAAAATGAGTGTTGGGTTGAGTAACAAAACTTTGAAATCAGAACATAATTGTGATCCTTGTTACAAAAACCCAAGAGAACTCATTAGCACAATACTTGAAGAAAGAATAACTCCCTCTGTCCCAATTTAAGTGTCTTAGTTTAATTGTCCACAAAGTTTATGAAATAAAGAAATGTTTGAATCTTGTTGTCTTGAATTAAAGATGTGTGTAGTCCTTTAAATCTTGTGTTCTTAAATTTGCCTAGAAGAATGTTGGAACTGAAAAATATACTAAAGATAGAAAGAGACACTCTTTTTGGGACAGTCCAAAAATGAAAGACACTTAAAAAATCAGGATGGAGGGAGTACAAAACAATTCCAAGTACACTGTTAAGGAGCTTCAAGGATAATTATTATAATCTTGAAATATATTTAAAGGGCCATCCAAGTCATAAATATCGATTTTTTTCCGTCCTCAAGCCATACTTATTAGCCATTGCATAGTAGTTCATTATCCTTCTACCTTCCACAATATCAGAAAATGTCATATCCTTCTTCAACTCCCTTATAATTGTCCAGCCTACTAATAACCTCGATTTCTTCATCATACTCCAAATTGGCAAATCAAAAAATTATAGTCCTCAATAACATGATCATTATCAGATGCTACCTCAACGTCTACATGATATGTTTCGATATGATGCAAAATTATATGTTTATGGATGATCAAATTTGTCTCATCTGCAGCAAACAAGTGTATAACTCCCAACTCATGGCGAATAAGGTTCTGCAAAGCCCTAAAATACCATCATCTCCATCAATAATATAGTCCCTACTCGGGTCTGGCAACTAACAATTGTTTGACCTTAATAAACCTTAGCTCTTTCTTGAACTCTTCCACAAAAATCTTTATAAGAAAGCAGGTTTTTGGTCAAACCTATGACAGAAGTGCGCCAGTTTCTTACTATTGAATAAGTGAGGAGAAAAGACTCATTCACCCCATAGTGGAAACACACTTTCTCTTTGTCAATCATGCTTCGGTAAAGATCACATGCCAAGGAAAAAATGAGGGACCACATCAGCAACATACATAGGCTATACAAAATCTGTGAATATAAAAACTCTAGAATGACACAACACATTTTGGGACCATAAAAGAAAGGAACAGAACCATAAAAACACTGAAACTTTACATATTAAGCTATGATTTACATACTCAAAAATAAGAAACTCCACATTAACAGATTCTCTACCCACCACCTTAAATAATTATTTAAATAGAGAACCAGCCTTTATGAGCTATTCCTTTTGTCCTTCTCCCTCATAAACAAGCTATGAAGTCAACTTTGGCCATAGTTTTTTTCCCGATCAATTACCAAAAGAACTGAGTTAAGGCTTAAGGATTTGGGTCTGGTCGAGTAAGGGAATTGAGGAGAATGGATTATGGGTTTGGGCAAAAAGAGTCTGGGTCGGGTTCTAATATGGAGCGGTTAAAGCTAATTGGCATGGGTATTAAATAAGTGGGACATGTTAGTGATGTGACCTGTTTAATTTGATGTTATTGTCCAATTCAGTATTTTTAAACCAAAAATTGGTATTCAAACTGGCTATTTGAGCTGTTAGTGGTATGTGGCATGAATGTGCAAATTGTGTCATGGCAATGACAAAAATATGCACAACTAGTAATGAGTGGCACAGCAGAGCCATTTCTGATAGTTCAATGGTATATTTTTTCTTTTCTTCTTTTATTAAAAGACATGGGCAATCTCGTCATTTAGGTGGATTTAGTGGTCATGCTAATATGCGGAGTGGTAACCAAGGTAGGTCTCGTAAATCCTATTGGGCCTCAGTTTTGATTAAGAAATCAAATGCTGGGATTGCAAGCAAGTAGGTCACAAGAAAGCTGCTTGTCCCTGAACAAGAAACCAGGTGACCATTTTTATGAACCGAACCATAGCACTACCATCAAGGGCTTAACATGATTGGCCCGATGGTATCAAATCCCTATTTATGGATGTATTCTACACAAATCATTTTTCCATATAGGACACTAAATGCGTTACATTCTTGAATAGTTGAAACTCTTTCTTAGGACTGTTGTTAAGGTCTCGAAGGCAATTTCATTTGATAAAAAATTGGATATTCTTTTTGTATTTCCATCGAAGATGGGTTCATTTCTATAATACCATTGTTGAGGAGAACAACTTGTTCTTGAAATCATCATGGCTAAAAGATGAACATAATAATGGGTTCGAGAAAGAAGGAAAGTTGAGAACCCATCTGAGGTGGAAAAATTGTGGGCAAGTAAAATGAATAAAGTGAACTCATTTAGTTCAATGATGGGTTTGATGACTTTGTCCCAATTTTTTTTAATCTTGTTTGTTGGACTATATTCCCGTTGTGTTTATGAAATGGGTTTGTCATCCAATGTTACTTGGTCGAGTCTAAAGGAATTACAAGCATATAATGGTAGTCGATGTGAAGGAAAATACTGTAATTGACCTAAGCCAGTCAAAACATTTCCTACAAAAATTTTGATTGATGAGTTAGCTTTTGTTTAAATAACTCAGTTGTGTTTCTGATAATTGCTTTTGAGTATTGGTGTTAAAAAGGGGAAAAGAAAAAAGAATGAGATGTGGCAATCATTGAAGATGTGAAGGCGACCATAGCAGGTCGGAGAGGATGAGAAACAAAAGGAATTAATATGAGTTATATCAACCAAAAATTATGTTTTCATGCACTTAAAATTTAGGTGCATGACACCTATCATGTTGGTGATAGGCGTGCACGAGATATAATTTTGTCAAGTGAAAGTGTTCAAATAATCATTATGAAAGTTAGTGGTGGTGTCTATCTGAAAATTGATGCCATGTTTGAGGTATCTCTAGATTTGCCCATGATATTTGTTGTTGGCTAATATAAAAAGAATTAGAAATCCCATTCCAACATCTTCAGGGGGGAAAACAATATCAGCATCCAAGTTTGAATTCGAAATGGACCTTATTTTCTCTGTTTTAATATGGGATGAAGATGAATCACCATGCTTACCTTGCAACAGAGGAGAAAGTTGCTCTAACTCAATCAGATGAAATCAAGTTATCAGTTGCTTTCATCTTCATGTGAAAAACGGAGAACTATCTGTTATGAGTACTTGGCTTCTTATGAAAAGAGTTCCAATAGACAGCTGGCCTGAGAATTTTGAACTTCAGATTCTTCTTGGGGTAGTTTTGGAATTCCTTATTAATAAAGCCTTGCTGGATAGTTATATTGTTTGCATAATCTAAATCAGGTTCTCTTTACCCCTTTACCAATATTTCCATCAGTTCATTTTTTCCTTTTTTTTTTTTGGTAATCATGGTGTTTGCTTCAGTTTGTGCACACGTTGACTAATTCACGGGGCACATACTATCTTTCACCAGCACAAGTATCAGGACCAAGGCTTGGATAGATGGGAAGAAAGCGCCTAGGACTTTTATGTCCACTGTCATTTCGACCACATCATTGACCATTAGGCCCACACCCTTGCATACATATTACCGGTAGTGCTATATGTGGTTATTTTGAAATCCGTTGGATAACAATTTGTGATACTTAAATTGTCAATGTCGCTAATCTCTGTATTAGTTTGGTTCTCCTTTTATAATTTTGTTACATATTGCACTACAAGCTGATTCAGAGGTCCAGGTTCTGCTTGACTTTAAAGCTTGTTCTTGGCAATTATTTGTGTTTTCGTAATTTAGTCTTGTACAAAAATAGTTGTCTTGCTGGTATATGACTCTGATTTTATAGTTGTGTTCTTTAACAAGTTCATGTCAATATAGCAGTTTCCTTTACTTCAGCTCTTTTTCTTTATTCAGCTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAAGTAATAGCTACATACAATTATCTGCTTTAGCTCTGCTTTACATCCACATTGTTTTCTATAATTTACTTATGATTTCTTCTTCTCTTGCTAATTCATTTTGGTAGGGACTGGCTGAATC</genome_strand>
        <mrna_strand>GGAGTAGTCAAAGACGCAG--TCTGATTGGATCGGCCGGCAGCCGGAATATGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAATGCCTACATCAAGTTAAACCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAACGGTGTTCTTCTTGGCCGAATCTCCGGCAACGGTGACAACGTTGAAATTGTCGAATCCGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTGCACTTATCATG..........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCTGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTGCTG.......................................................................................................GTGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTACACTAAGGAATCATCTAAGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGCTCTTCTAGACTATGTCTCATCTGGGAAATGGAAGGACATCGTGGATTCTGATGACCATCTGGATGACATTAGCAA........................................................................................................GGACTGGCTGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E340374" ref_strand="+" ref_description="SGN-E340374 [cTOF-2-B6]">
      <seq>agcatcggagtagtcaaagacgcagaaacagattcgatcggccggccgccggaataaggattctcagagtgattgtttgaagagatgggtggcgaatcgaattacgagattcatcaaaacgcctacatcaagttaatccttcatgcccttaagcacaagacttcctccgtcaatggtgttcttcttggtagaatatccggcaacggcgacaacgtcgaaattgtcgaatctgttccgttgttccactctcagattggtttacttccaccactcgaaatttcacttatcatgattgaggagtactatgctgataaaggtttgagtattgtgggttattttcacgcaaatgaaagatccgatgattttgaggtcggaaatgtggccaagaatattggtgatcatatctacaaatatttccctcaagctgctttacttctgatggataacaagaagcttgaagctttactgaaggagggcaaagacaggagtcctgttatgcagctttacactaaggaatcatctaggagctggaaactagcgggagctgatgcaagcggctctctgaaaatcaaagaaccatctgcaaatattgttcttctagactatgtctcatcagggaaatggaaggacatcgtggatttcgatgaccatctggatgacattagcaaggactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21435" stop="15194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21135" g_stop="20845" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20514" g_stop="20368" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="438" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20264" g_stop="20202" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="501" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20201" i_stop="15668" i_length="4534">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15667" g_stop="15501" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="668" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15500" i_stop="15397" i_length="104">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15396" g_stop="15390" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="675" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E340374" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21135" e_stop="20845"/>
          <exon e_start="20514" e_stop="20368"/>
          <exon e_start="20264" e_stop="20202"/>
          <exon e_start="15667" e_stop="15501"/>
          <exon e_start="15396" e_stop="15390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATGGTCAGTTCCCCTCCCTTTGAATTAAAGTGGATTTTAGTAGCGCAATTGAAGTATACTAATTGTTTTGATAATGAAATTGAGCATTAGGTTTGTATTTTGTAGTAACTGAAGTACACTTATAATGAAATTGAAGTACACTAATTGCTCGGGCTGGGCTCAGCTTGATGCCCAGGCCTAATTACAGGTTAATACTTGTAGATGTGGGTTCGTATCCACTATATCTGTAGGATAATAGATTTGAACTGAGTATAAAGGGATGTTTTGGAGAATTTTCAACTAAATATGTACCATGCCTTCTAACTTGTTTGGAAGTCTCTTTTATTTGGATAGATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTGGTACCCTTTTTTCTTACTCAACATAGTTCTAATTCAAAATGTTCCAATCTTTAAATTGTAAGTTAACAAAGTGCTTGAGCTTAATTTGCCTTGTATTTTACAGATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAGGTATGCACATATCATTTTAATGAGCTATTGGCTTTTGAACTAAATTCAGTCTTTTTATTCTTCTTCATATTTTTATCCGGTCTAGTTAATTATTGATGCCAAATTCCAGTAATTATGCCATTCAAATTTGAACTTTTGGTGCATTAAGCATTAGTGACTACGTGACCAACTTCATATATATAGTTTATTCTTCCTTGATAATCATTCTAGCTGTCTTATGGTTTCTCTTCTCTATCTGTCCCATTTTTCACGTGGTGATGAAGTTAGTTGGAATAATGTGGTTACTTTAGTTCTTTTGTTTCTATTTAATGCGGAAGGTTATTAGTTCTTTCCATTTACTAGAGAACTTCGTGTTGTTATTTGACGACATAGAACTCTGTCCTTTTGTTTTGATAATTATGGGAGTCCAGGAAATCAAGTTCACATCTAAGTCTGTATGTCCACAATAATCTTAATGTTCTATTTCTGCTGGGTGAACAAATGAAAATCCTTGTTTTATATTCTATCTGCGTTGTTTCTAATTAATCCAGTTGGCACGAAGGAAAAGCAGTTGATAATCCTACTTCTCTGTGCAAAGGGTAATGAACTACTATGCAATGGCTAATGGGTATGACTTGAGGATTGTAAAAACTGATCCCACTAGGACTTGGTATATTTGTGAACTTGGAATGTCCTTTTAGATGTCCTATCTCACAGGATAAAATGAGTGTTGGGTTGAGTAACAAAACTTTGAAATCAGAACATAATTGTGATCCTTGTTACAAAAACCCAAGAGAACTCATTAGCACAATACTTGAAGAAAGAATAACTCCCTCTGTCCCAATTTAAGTGTCTTAGTTTAATTGTCCACAAAGTTTATGAAATAAAGAAATGTTTGAATCTTGTTGTCTTGAATTAAAGATGTGTGTAGTCCTTTAAATCTTGTGTTCTTAAATTTGCCTAGAAGAATGTTGGAACTGAAAAATATACTAAAGATAGAAAGAGACACTCTTTTTGGGACAGTCCAAAAATGAAAGACACTTAAAAAATCAGGATGGAGGGAGTACAAAACAATTCCAAGTACACTGTTAAGGAGCTTCAAGGATAATTATTATAATCTTGAAATATATTTAAAGGGCCATCCAAGTCATAAATATCGATTTTTTTCCGTCCTCAAGCCATACTTATTAGCCATTGCATAGTAGTTCATTATCCTTCTACCTTCCACAATATCAGAAAATGTCATATCCTTCTTCAACTCCCTTATAATTGTCCAGCCTACTAATAACCTCGATTTCTTCATCATACTCCAAATTGGCAAATCAAAAAATTATAGTCCTCAATAACATGATCATTATCAGATGCTACCTCAACGTCTACATGATATGTTTCGATATGATGCAAAATTATATGTTTATGGATGATCAAATTTGTCTCATCTGCAGCAAACAAGTGTATAACTCCCAACTCATGGCGAATAAGGTTCTGCAAAGCCCTAAAATACCATCATCTCCATCAATAATATAGTCCCTACTCGGGTCTGGCAACTAACAATTGTTTGACCTTAATAAACCTTAGCTCTTTCTTGAACTCTTCCACAAAAATCTTTATAAGAAAGCAGGTTTTTGGTCAAACCTATGACAGAAGTGCGCCAGTTTCTTACTATTGAATAAGTGAGGAGAAAAGACTCATTCACCCCATAGTGGAAACACACTTTCTCTTTGTCAATCATGCTTCGGTAAAGATCACATGCCAAGGAAAAAATGAGGGACCACATCAGCAACATACATAGGCTATACAAAATCTGTGAATATAAAAACTCTAGAATGACACAACACATTTTGGGACCATAAAAGAAAGGAACAGAACCATAAAAACACTGAAACTTTACATATTAAGCTATGATTTACATACTCAAAAATAAGAAACTCCACATTAACAGATTCTCTACCCACCACCTTAAATAATTATTTAAATAGAGAACCAGCCTTTATGAGCTATTCCTTTTGTCCTTCTCCCTCATAAACAAGCTATGAAGTCAACTTTGGCCATAGTTTTTTTCCCGATCAATTACCAAAAGAACTGAGTTAAGGCTTAAGGATTTGGGTCTGGTCGAGTAAGGGAATTGAGGAGAATGGATTATGGGTTTGGGCAAAAAGAGTCTGGGTCGGGTTCTAATATGGAGCGGTTAAAGCTAATTGGCATGGGTATTAAATAAGTGGGACATGTTAGTGATGTGACCTGTTTAATTTGATGTTATTGTCCAATTCAGTATTTTTAAACCAAAAATTGGTATTCAAACTGGCTATTTGAGCTGTTAGTGGTATGTGGCATGAATGTGCAAATTGTGTCATGGCAATGACAAAAATATGCACAACTAGTAATGAGTGGCACAGCAGAGCCATTTCTGATAGTTCAATGGTATATTTTTTCTTTTCTTCTTTTATTAAAAGACATGGGCAATCTCGTCATTTAGGTGGATTTAGTGGTCATGCTAATATGCGGAGTGGTAACCAAGGTAGGTCTCGTAAATCCTATTGGGCCTCAGTTTTGATTAAGAAATCAAATGCTGGGATTGCAAGCAAGTAGGTCACAAGAAAGCTGCTTGTCCCTGAACAAGAAACCAGGTGACCATTTTTATGAACCGAACCATAGCACTACCATCAAGGGCTTAACATGATTGGCCCGATGGTATCAAATCCCTATTTATGGATGTATTCTACACAAATCATTTTTCCATATAGGACACTAAATGCGTTACATTCTTGAATAGTTGAAACTCTTTCTTAGGACTGTTGTTAAGGTCTCGAAGGCAATTTCATTTGATAAAAAATTGGATATTCTTTTTGTATTTCCATCGAAGATGGGTTCATTTCTATAATACCATTGTTGAGGAGAACAACTTGTTCTTGAAATCATCATGGCTAAAAGATGAACATAATAATGGGTTCGAGAAAGAAGGAAAGTTGAGAACCCATCTGAGGTGGAAAAATTGTGGGCAAGTAAAATGAATAAAGTGAACTCATTTAGTTCAATGATGGGTTTGATGACTTTGTCCCAATTTTTTTTAATCTTGTTTGTTGGACTATATTCCCGTTGTGTTTATGAAATGGGTTTGTCATCCAATGTTACTTGGTCGAGTCTAAAGGAATTACAAGCATATAATGGTAGTCGATGTGAAGGAAAATACTGTAATTGACCTAAGCCAGTCAAAACATTTCCTACAAAAATTTTGATTGATGAGTTAGCTTTTGTTTAAATAACTCAGTTGTGTTTCTGATAATTGCTTTTGAGTATTGGTGTTAAAAAGGGGAAAAGAAAAAAGAATGAGATGTGGCAATCATTGAAGATGTGAAGGCGACCATAGCAGGTCGGAGAGGATGAGAAACAAAAGGAATTAATATGAGTTATATCAACCAAAAATTATGTTTTCATGCACTTAAAATTTAGGTGCATGACACCTATCATGTTGGTGATAGGCGTGCACGAGATATAATTTTGTCAAGTGAAAGTGTTCAAATAATCATTATGAAAGTTAGTGGTGGTGTCTATCTGAAAATTGATGCCATGTTTGAGGTATCTCTAGATTTGCCCATGATATTTGTTGTTGGCTAATATAAAAAGAATTAGAAATCCCATTCCAACATCTTCAGGGGGGAAAACAATATCAGCATCCAAGTTTGAATTCGAAATGGACCTTATTTTCTCTGTTTTAATATGGGATGAAGATGAATCACCATGCTTACCTTGCAACAGAGGAGAAAGTTGCTCTAACTCAATCAGATGAAATCAAGTTATCAGTTGCTTTCATCTTCATGTGAAAAACGGAGAACTATCTGTTATGAGTACTTGGCTTCTTATGAAAAGAGTTCCAATAGACAGCTGGCCTGAGAATTTTGAACTTCAGATTCTTCTTGGGGTAGTTTTGGAATTCCTTATTAATAAAGCCTTGCTGGATAGTTATATTGTTTGCATAATCTAAATCAGGTTCTCTTTACCCCTTTACCAATATTTCCATCAGTTCATTTTTTCCTTTTTTTTTTTTGGTAATCATGGTGTTTGCTTCAGTTTGTGCACACGTTGACTAATTCACGGGGCACATACTATCTTTCACCAGCACAAGTATCAGGACCAAGGCTTGGATAGATGGGAAGAAAGCGCCTAGGACTTTTATGTCCACTGTCATTTCGACCACATCATTGACCATTAGGCCCACACCCTTGCATACATATTACCGGTAGTGCTATATGTGGTTATTTTGAAATCCGTTGGATAACAATTTGTGATACTTAAATTGTCAATGTCGCTAATCTCTGTATTAGTTTGGTTCTCCTTTTATAATTTTGTTACATATTGCACTACAAGCTGATTCAGAGGTCCAGGTTCTGCTTGACTTTAAAGCTTGTTCTTGGCAATTATTTGTGTTTTCGTAATTTAGTCTTGTACAAAAATAGTTGTCTTGCTGGTATATGACTCTGATTTTATAGTTGTGTTCTTTAACAAGTTCATGTCAATATAGCAGTTTCCTTTACTTCAGCTCTTTTTCTTTATTCAGCTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAAGTAATAGCTACATACAATTATCTGCTTTAGCTCTGCTTTACATCCACATTGTTTTCTATAATTTACTTATGATTTCTTCTTCTCTTGCTAATTCATTTTGGTAGGGACTGG</genome_strand>
        <mrna_strand>AGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG..........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG.......................................................................................................ATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAA........................................................................................................GGACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E250804" ref_strand="+" ref_description="SGN-E250804 [cLEG-13-E23]">
      <seq>aagtacactagagagcatcggagtagtcaaagacgcagaaacagattcgggcggccggccgccggaataaggattctcagagtgattgtttgaagagatgggtggcgaatcgaattacgagattcatcaaaacgcctacatcaagttaatccttcatgcccttaagcacaagacttcctccgtcaatggtgttcttcttggtagaatatccggcaacggcgacaacgtcgaaattgtcgaatctgttccgttgttccactctcagattggtttacttccaccactcgaaatttcacttatcatgattgaggagtactatgctgataaaggtttgagtattgtgggttattttcacgcaaatgaaagatccgatgattttgaggtcggaaatgtggccaagaatattggtgatcatatctacaaatatttccctcaagctgctttacttctgatggataacaagaagcttgaagctttactgaaggagggcaaagacaggagtcctgttatgcagctttacactaaggaatcatctangagctggaaactagcgggagctgatgcaagcggctctctgaaaatcaaagaaccatctgcaaatattgttcttctagactatgtctcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21448" stop="15255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21148" g_stop="20845" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20514" g_stop="20368" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="451" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20264" g_stop="20202" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="514" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20201" i_stop="15668" i_length="4534">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15667" g_stop="15555" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="627" r_length="113" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E250804" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21148" e_stop="20845"/>
          <exon e_start="20514" e_stop="20368"/>
          <exon e_start="20264" e_stop="20202"/>
          <exon e_start="15667" e_stop="15555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTACACTAGAGAGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATGGTCAGTTCCCCTCCCTTTGAATTAAAGTGGATTTTAGTAGCGCAATTGAAGTATACTAATTGTTTTGATAATGAAATTGAGCATTAGGTTTGTATTTTGTAGTAACTGAAGTACACTTATAATGAAATTGAAGTACACTAATTGCTCGGGCTGGGCTCAGCTTGATGCCCAGGCCTAATTACAGGTTAATACTTGTAGATGTGGGTTCGTATCCACTATATCTGTAGGATAATAGATTTGAACTGAGTATAAAGGGATGTTTTGGAGAATTTTCAACTAAATATGTACCATGCCTTCTAACTTGTTTGGAAGTCTCTTTTATTTGGATAGATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTGGTACCCTTTTTTCTTACTCAACATAGTTCTAATTCAAAATGTTCCAATCTTTAAATTGTAAGTTAACAAAGTGCTTGAGCTTAATTTGCCTTGTATTTTACAGATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAGGTATGCACATATCATTTTAATGAGCTATTGGCTTTTGAACTAAATTCAGTCTTTTTATTCTTCTTCATATTTTTATCCGGTCTAGTTAATTATTGATGCCAAATTCCAGTAATTATGCCATTCAAATTTGAACTTTTGGTGCATTAAGCATTAGTGACTACGTGACCAACTTCATATATATAGTTTATTCTTCCTTGATAATCATTCTAGCTGTCTTATGGTTTCTCTTCTCTATCTGTCCCATTTTTCACGTGGTGATGAAGTTAGTTGGAATAATGTGGTTACTTTAGTTCTTTTGTTTCTATTTAATGCGGAAGGTTATTAGTTCTTTCCATTTACTAGAGAACTTCGTGTTGTTATTTGACGACATAGAACTCTGTCCTTTTGTTTTGATAATTATGGGAGTCCAGGAAATCAAGTTCACATCTAAGTCTGTATGTCCACAATAATCTTAATGTTCTATTTCTGCTGGGTGAACAAATGAAAATCCTTGTTTTATATTCTATCTGCGTTGTTTCTAATTAATCCAGTTGGCACGAAGGAAAAGCAGTTGATAATCCTACTTCTCTGTGCAAAGGGTAATGAACTACTATGCAATGGCTAATGGGTATGACTTGAGGATTGTAAAAACTGATCCCACTAGGACTTGGTATATTTGTGAACTTGGAATGTCCTTTTAGATGTCCTATCTCACAGGATAAAATGAGTGTTGGGTTGAGTAACAAAACTTTGAAATCAGAACATAATTGTGATCCTTGTTACAAAAACCCAAGAGAACTCATTAGCACAATACTTGAAGAAAGAATAACTCCCTCTGTCCCAATTTAAGTGTCTTAGTTTAATTGTCCACAAAGTTTATGAAATAAAGAAATGTTTGAATCTTGTTGTCTTGAATTAAAGATGTGTGTAGTCCTTTAAATCTTGTGTTCTTAAATTTGCCTAGAAGAATGTTGGAACTGAAAAATATACTAAAGATAGAAAGAGACACTCTTTTTGGGACAGTCCAAAAATGAAAGACACTTAAAAAATCAGGATGGAGGGAGTACAAAACAATTCCAAGTACACTGTTAAGGAGCTTCAAGGATAATTATTATAATCTTGAAATATATTTAAAGGGCCATCCAAGTCATAAATATCGATTTTTTTCCGTCCTCAAGCCATACTTATTAGCCATTGCATAGTAGTTCATTATCCTTCTACCTTCCACAATATCAGAAAATGTCATATCCTTCTTCAACTCCCTTATAATTGTCCAGCCTACTAATAACCTCGATTTCTTCATCATACTCCAAATTGGCAAATCAAAAAATTATAGTCCTCAATAACATGATCATTATCAGATGCTACCTCAACGTCTACATGATATGTTTCGATATGATGCAAAATTATATGTTTATGGATGATCAAATTTGTCTCATCTGCAGCAAACAAGTGTATAACTCCCAACTCATGGCGAATAAGGTTCTGCAAAGCCCTAAAATACCATCATCTCCATCAATAATATAGTCCCTACTCGGGTCTGGCAACTAACAATTGTTTGACCTTAATAAACCTTAGCTCTTTCTTGAACTCTTCCACAAAAATCTTTATAAGAAAGCAGGTTTTTGGTCAAACCTATGACAGAAGTGCGCCAGTTTCTTACTATTGAATAAGTGAGGAGAAAAGACTCATTCACCCCATAGTGGAAACACACTTTCTCTTTGTCAATCATGCTTCGGTAAAGATCACATGCCAAGGAAAAAATGAGGGACCACATCAGCAACATACATAGGCTATACAAAATCTGTGAATATAAAAACTCTAGAATGACACAACACATTTTGGGACCATAAAAGAAAGGAACAGAACCATAAAAACACTGAAACTTTACATATTAAGCTATGATTTACATACTCAAAAATAAGAAACTCCACATTAACAGATTCTCTACCCACCACCTTAAATAATTATTTAAATAGAGAACCAGCCTTTATGAGCTATTCCTTTTGTCCTTCTCCCTCATAAACAAGCTATGAAGTCAACTTTGGCCATAGTTTTTTTCCCGATCAATTACCAAAAGAACTGAGTTAAGGCTTAAGGATTTGGGTCTGGTCGAGTAAGGGAATTGAGGAGAATGGATTATGGGTTTGGGCAAAAAGAGTCTGGGTCGGGTTCTAATATGGAGCGGTTAAAGCTAATTGGCATGGGTATTAAATAAGTGGGACATGTTAGTGATGTGACCTGTTTAATTTGATGTTATTGTCCAATTCAGTATTTTTAAACCAAAAATTGGTATTCAAACTGGCTATTTGAGCTGTTAGTGGTATGTGGCATGAATGTGCAAATTGTGTCATGGCAATGACAAAAATATGCACAACTAGTAATGAGTGGCACAGCAGAGCCATTTCTGATAGTTCAATGGTATATTTTTTCTTTTCTTCTTTTATTAAAAGACATGGGCAATCTCGTCATTTAGGTGGATTTAGTGGTCATGCTAATATGCGGAGTGGTAACCAAGGTAGGTCTCGTAAATCCTATTGGGCCTCAGTTTTGATTAAGAAATCAAATGCTGGGATTGCAAGCAAGTAGGTCACAAGAAAGCTGCTTGTCCCTGAACAAGAAACCAGGTGACCATTTTTATGAACCGAACCATAGCACTACCATCAAGGGCTTAACATGATTGGCCCGATGGTATCAAATCCCTATTTATGGATGTATTCTACACAAATCATTTTTCCATATAGGACACTAAATGCGTTACATTCTTGAATAGTTGAAACTCTTTCTTAGGACTGTTGTTAAGGTCTCGAAGGCAATTTCATTTGATAAAAAATTGGATATTCTTTTTGTATTTCCATCGAAGATGGGTTCATTTCTATAATACCATTGTTGAGGAGAACAACTTGTTCTTGAAATCATCATGGCTAAAAGATGAACATAATAATGGGTTCGAGAAAGAAGGAAAGTTGAGAACCCATCTGAGGTGGAAAAATTGTGGGCAAGTAAAATGAATAAAGTGAACTCATTTAGTTCAATGATGGGTTTGATGACTTTGTCCCAATTTTTTTTAATCTTGTTTGTTGGACTATATTCCCGTTGTGTTTATGAAATGGGTTTGTCATCCAATGTTACTTGGTCGAGTCTAAAGGAATTACAAGCATATAATGGTAGTCGATGTGAAGGAAAATACTGTAATTGACCTAAGCCAGTCAAAACATTTCCTACAAAAATTTTGATTGATGAGTTAGCTTTTGTTTAAATAACTCAGTTGTGTTTCTGATAATTGCTTTTGAGTATTGGTGTTAAAAAGGGGAAAAGAAAAAAGAATGAGATGTGGCAATCATTGAAGATGTGAAGGCGACCATAGCAGGTCGGAGAGGATGAGAAACAAAAGGAATTAATATGAGTTATATCAACCAAAAATTATGTTTTCATGCACTTAAAATTTAGGTGCATGACACCTATCATGTTGGTGATAGGCGTGCACGAGATATAATTTTGTCAAGTGAAAGTGTTCAAATAATCATTATGAAAGTTAGTGGTGGTGTCTATCTGAAAATTGATGCCATGTTTGAGGTATCTCTAGATTTGCCCATGATATTTGTTGTTGGCTAATATAAAAAGAATTAGAAATCCCATTCCAACATCTTCAGGGGGGAAAACAATATCAGCATCCAAGTTTGAATTCGAAATGGACCTTATTTTCTCTGTTTTAATATGGGATGAAGATGAATCACCATGCTTACCTTGCAACAGAGGAGAAAGTTGCTCTAACTCAATCAGATGAAATCAAGTTATCAGTTGCTTTCATCTTCATGTGAAAAACGGAGAACTATCTGTTATGAGTACTTGGCTTCTTATGAAAAGAGTTCCAATAGACAGCTGGCCTGAGAATTTTGAACTTCAGATTCTTCTTGGGGTAGTTTTGGAATTCCTTATTAATAAAGCCTTGCTGGATAGTTATATTGTTTGCATAATCTAAATCAGGTTCTCTTTACCCCTTTACCAATATTTCCATCAGTTCATTTTTTCCTTTTTTTTTTTTGGTAATCATGGTGTTTGCTTCAGTTTGTGCACACGTTGACTAATTCACGGGGCACATACTATCTTTCACCAGCACAAGTATCAGGACCAAGGCTTGGATAGATGGGAAGAAAGCGCCTAGGACTTTTATGTCCACTGTCATTTCGACCACATCATTGACCATTAGGCCCACACCCTTGCATACATATTACCGGTAGTGCTATATGTGGTTATTTTGAAATCCGTTGGATAACAATTTGTGATACTTAAATTGTCAATGTCGCTAATCTCTGTATTAGTTTGGTTCTCCTTTTATAATTTTGTTACATATTGCACTACAAGCTGATTCAGAGGTCCAGGTTCTGCTTGACTTTAAAGCTTGTTCTTGGCAATTATTTGTGTTTTCGTAATTTAGTCTTGTACAAAAATAGTTGTCTTGCTGGTATATGACTCTGATTTTATAGTTGTGTTCTTTAACAAGTTCATGTCAATATAGCAGTTTCCTTTACTTCAGCTCTTTTTCTTTATTCAGCTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATC</genome_strand>
        <mrna_strand>AAGTACACTAGAGAGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGGGCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG..........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG.......................................................................................................ATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTACACTAAGGAATCATCTANGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E463317" ref_strand="+" ref_description="SGN-E463317 [cPRO-14-C12]">
      <seq>catcggagtagtcaaagacgcagtcagattggatcggccggcagccggaatagggattctcagagtgattgtttgaagagatgggtggcgaatcgaattacgagattcatcaaaatgcctacatcaagttaaaccttcatgcccttaagcacaagacttcctccgtcaacggtgttcttcttggccgaatctccggcaacggtgacaacgttgaaattgtcgaatccgttccgttgttccactctcagattggtttacttccaccactcgaaatttcacttatcatgattgaggagtactatgctgataaaggtttgagtattgtgggttattttcacgcaaatgaaagatctgatgattttgaggtcggaaatgtggccaagaatattggtgatcatatctacaaatatttccctcaagctgctttacttctgttggataacaagaagcttgaagctttactgaaggagggcaaagacaggagtcctgttatgcagctttacactaaggaatcatctaggagctggaaactagcgggagctgatgcaagcggctctctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21433" stop="15301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21133" g_stop="20845" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20514" g_stop="20368" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="434" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20264" g_stop="20202" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="497" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20201" i_stop="15668" i_length="4534">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15667" g_stop="15601" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="564" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E463317" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21133" e_stop="20845"/>
          <exon e_start="20514" e_stop="20368"/>
          <exon e_start="20264" e_stop="20202"/>
          <exon e_start="15667" e_stop="15601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATGGTCAGTTCCCCTCCCTTTGAATTAAAGTGGATTTTAGTAGCGCAATTGAAGTATACTAATTGTTTTGATAATGAAATTGAGCATTAGGTTTGTATTTTGTAGTAACTGAAGTACACTTATAATGAAATTGAAGTACACTAATTGCTCGGGCTGGGCTCAGCTTGATGCCCAGGCCTAATTACAGGTTAATACTTGTAGATGTGGGTTCGTATCCACTATATCTGTAGGATAATAGATTTGAACTGAGTATAAAGGGATGTTTTGGAGAATTTTCAACTAAATATGTACCATGCCTTCTAACTTGTTTGGAAGTCTCTTTTATTTGGATAGATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTGGTACCCTTTTTTCTTACTCAACATAGTTCTAATTCAAAATGTTCCAATCTTTAAATTGTAAGTTAACAAAGTGCTTGAGCTTAATTTGCCTTGTATTTTACAGATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAGGTATGCACATATCATTTTAATGAGCTATTGGCTTTTGAACTAAATTCAGTCTTTTTATTCTTCTTCATATTTTTATCCGGTCTAGTTAATTATTGATGCCAAATTCCAGTAATTATGCCATTCAAATTTGAACTTTTGGTGCATTAAGCATTAGTGACTACGTGACCAACTTCATATATATAGTTTATTCTTCCTTGATAATCATTCTAGCTGTCTTATGGTTTCTCTTCTCTATCTGTCCCATTTTTCACGTGGTGATGAAGTTAGTTGGAATAATGTGGTTACTTTAGTTCTTTTGTTTCTATTTAATGCGGAAGGTTATTAGTTCTTTCCATTTACTAGAGAACTTCGTGTTGTTATTTGACGACATAGAACTCTGTCCTTTTGTTTTGATAATTATGGGAGTCCAGGAAATCAAGTTCACATCTAAGTCTGTATGTCCACAATAATCTTAATGTTCTATTTCTGCTGGGTGAACAAATGAAAATCCTTGTTTTATATTCTATCTGCGTTGTTTCTAATTAATCCAGTTGGCACGAAGGAAAAGCAGTTGATAATCCTACTTCTCTGTGCAAAGGGTAATGAACTACTATGCAATGGCTAATGGGTATGACTTGAGGATTGTAAAAACTGATCCCACTAGGACTTGGTATATTTGTGAACTTGGAATGTCCTTTTAGATGTCCTATCTCACAGGATAAAATGAGTGTTGGGTTGAGTAACAAAACTTTGAAATCAGAACATAATTGTGATCCTTGTTACAAAAACCCAAGAGAACTCATTAGCACAATACTTGAAGAAAGAATAACTCCCTCTGTCCCAATTTAAGTGTCTTAGTTTAATTGTCCACAAAGTTTATGAAATAAAGAAATGTTTGAATCTTGTTGTCTTGAATTAAAGATGTGTGTAGTCCTTTAAATCTTGTGTTCTTAAATTTGCCTAGAAGAATGTTGGAACTGAAAAATATACTAAAGATAGAAAGAGACACTCTTTTTGGGACAGTCCAAAAATGAAAGACACTTAAAAAATCAGGATGGAGGGAGTACAAAACAATTCCAAGTACACTGTTAAGGAGCTTCAAGGATAATTATTATAATCTTGAAATATATTTAAAGGGCCATCCAAGTCATAAATATCGATTTTTTTCCGTCCTCAAGCCATACTTATTAGCCATTGCATAGTAGTTCATTATCCTTCTACCTTCCACAATATCAGAAAATGTCATATCCTTCTTCAACTCCCTTATAATTGTCCAGCCTACTAATAACCTCGATTTCTTCATCATACTCCAAATTGGCAAATCAAAAAATTATAGTCCTCAATAACATGATCATTATCAGATGCTACCTCAACGTCTACATGATATGTTTCGATATGATGCAAAATTATATGTTTATGGATGATCAAATTTGTCTCATCTGCAGCAAACAAGTGTATAACTCCCAACTCATGGCGAATAAGGTTCTGCAAAGCCCTAAAATACCATCATCTCCATCAATAATATAGTCCCTACTCGGGTCTGGCAACTAACAATTGTTTGACCTTAATAAACCTTAGCTCTTTCTTGAACTCTTCCACAAAAATCTTTATAAGAAAGCAGGTTTTTGGTCAAACCTATGACAGAAGTGCGCCAGTTTCTTACTATTGAATAAGTGAGGAGAAAAGACTCATTCACCCCATAGTGGAAACACACTTTCTCTTTGTCAATCATGCTTCGGTAAAGATCACATGCCAAGGAAAAAATGAGGGACCACATCAGCAACATACATAGGCTATACAAAATCTGTGAATATAAAAACTCTAGAATGACACAACACATTTTGGGACCATAAAAGAAAGGAACAGAACCATAAAAACACTGAAACTTTACATATTAAGCTATGATTTACATACTCAAAAATAAGAAACTCCACATTAACAGATTCTCTACCCACCACCTTAAATAATTATTTAAATAGAGAACCAGCCTTTATGAGCTATTCCTTTTGTCCTTCTCCCTCATAAACAAGCTATGAAGTCAACTTTGGCCATAGTTTTTTTCCCGATCAATTACCAAAAGAACTGAGTTAAGGCTTAAGGATTTGGGTCTGGTCGAGTAAGGGAATTGAGGAGAATGGATTATGGGTTTGGGCAAAAAGAGTCTGGGTCGGGTTCTAATATGGAGCGGTTAAAGCTAATTGGCATGGGTATTAAATAAGTGGGACATGTTAGTGATGTGACCTGTTTAATTTGATGTTATTGTCCAATTCAGTATTTTTAAACCAAAAATTGGTATTCAAACTGGCTATTTGAGCTGTTAGTGGTATGTGGCATGAATGTGCAAATTGTGTCATGGCAATGACAAAAATATGCACAACTAGTAATGAGTGGCACAGCAGAGCCATTTCTGATAGTTCAATGGTATATTTTTTCTTTTCTTCTTTTATTAAAAGACATGGGCAATCTCGTCATTTAGGTGGATTTAGTGGTCATGCTAATATGCGGAGTGGTAACCAAGGTAGGTCTCGTAAATCCTATTGGGCCTCAGTTTTGATTAAGAAATCAAATGCTGGGATTGCAAGCAAGTAGGTCACAAGAAAGCTGCTTGTCCCTGAACAAGAAACCAGGTGACCATTTTTATGAACCGAACCATAGCACTACCATCAAGGGCTTAACATGATTGGCCCGATGGTATCAAATCCCTATTTATGGATGTATTCTACACAAATCATTTTTCCATATAGGACACTAAATGCGTTACATTCTTGAATAGTTGAAACTCTTTCTTAGGACTGTTGTTAAGGTCTCGAAGGCAATTTCATTTGATAAAAAATTGGATATTCTTTTTGTATTTCCATCGAAGATGGGTTCATTTCTATAATACCATTGTTGAGGAGAACAACTTGTTCTTGAAATCATCATGGCTAAAAGATGAACATAATAATGGGTTCGAGAAAGAAGGAAAGTTGAGAACCCATCTGAGGTGGAAAAATTGTGGGCAAGTAAAATGAATAAAGTGAACTCATTTAGTTCAATGATGGGTTTGATGACTTTGTCCCAATTTTTTTTAATCTTGTTTGTTGGACTATATTCCCGTTGTGTTTATGAAATGGGTTTGTCATCCAATGTTACTTGGTCGAGTCTAAAGGAATTACAAGCATATAATGGTAGTCGATGTGAAGGAAAATACTGTAATTGACCTAAGCCAGTCAAAACATTTCCTACAAAAATTTTGATTGATGAGTTAGCTTTTGTTTAAATAACTCAGTTGTGTTTCTGATAATTGCTTTTGAGTATTGGTGTTAAAAAGGGGAAAAGAAAAAAGAATGAGATGTGGCAATCATTGAAGATGTGAAGGCGACCATAGCAGGTCGGAGAGGATGAGAAACAAAAGGAATTAATATGAGTTATATCAACCAAAAATTATGTTTTCATGCACTTAAAATTTAGGTGCATGACACCTATCATGTTGGTGATAGGCGTGCACGAGATATAATTTTGTCAAGTGAAAGTGTTCAAATAATCATTATGAAAGTTAGTGGTGGTGTCTATCTGAAAATTGATGCCATGTTTGAGGTATCTCTAGATTTGCCCATGATATTTGTTGTTGGCTAATATAAAAAGAATTAGAAATCCCATTCCAACATCTTCAGGGGGGAAAACAATATCAGCATCCAAGTTTGAATTCGAAATGGACCTTATTTTCTCTGTTTTAATATGGGATGAAGATGAATCACCATGCTTACCTTGCAACAGAGGAGAAAGTTGCTCTAACTCAATCAGATGAAATCAAGTTATCAGTTGCTTTCATCTTCATGTGAAAAACGGAGAACTATCTGTTATGAGTACTTGGCTTCTTATGAAAAGAGTTCCAATAGACAGCTGGCCTGAGAATTTTGAACTTCAGATTCTTCTTGGGGTAGTTTTGGAATTCCTTATTAATAAAGCCTTGCTGGATAGTTATATTGTTTGCATAATCTAAATCAGGTTCTCTTTACCCCTTTACCAATATTTCCATCAGTTCATTTTTTCCTTTTTTTTTTTTGGTAATCATGGTGTTTGCTTCAGTTTGTGCACACGTTGACTAATTCACGGGGCACATACTATCTTTCACCAGCACAAGTATCAGGACCAAGGCTTGGATAGATGGGAAGAAAGCGCCTAGGACTTTTATGTCCACTGTCATTTCGACCACATCATTGACCATTAGGCCCACACCCTTGCATACATATTACCGGTAGTGCTATATGTGGTTATTTTGAAATCCGTTGGATAACAATTTGTGATACTTAAATTGTCAATGTCGCTAATCTCTGTATTAGTTTGGTTCTCCTTTTATAATTTTGTTACATATTGCACTACAAGCTGATTCAGAGGTCCAGGTTCTGCTTGACTTTAAAGCTTGTTCTTGGCAATTATTTGTGTTTTCGTAATTTAGTCTTGTACAAAAATAGTTGTCTTGCTGGTATATGACTCTGATTTTATAGTTGTGTTCTTTAACAAGTTCATGTCAATATAGCAGTTTCCTTTACTTCAGCTCTTTTTCTTTATTCAGCTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAA</genome_strand>
        <mrna_strand>CATCGGAGTAGTCAAAGACGCAG--TCAGATTGGATCGGCCGGCAGCCGGAATAGGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAATGCCTACATCAAGTTAAACCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAACGGTGTTCTTCTTGGCCGAATCTCCGGCAACGGTGACAACGTTGAAATTGTCGAATCCGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG..........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCTGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG.......................................................................................................TTGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E304101" ref_strand="+" ref_description="SGN-E304101 [cLEX-6-N9]">
      <seq>gagtagtcaaagacgcagaaacagattcgatcggccggccgccggaataaggattctcagagtgattgtttgaagagatgggtggcgaatcgaattacgagattcatcaaaacgcctacatcaagttaatccttcatgcccttaagcacaagacttcctccgtcaatggtgttcttcttggtagaatatccggcaacggcgacaacgtcgaaattgtcgaatctgttccgttgttccactctcagattggtttacttccaccactcgaaatttcacttatcatgattgaggagtactatgctgataaaggtttgagtattgtgggttattttcacgcaaatgaaagatccgatgattttgaggtcggaaatgtggccaagaatattggtgatcatatctacaaatatttccctcaagctgctttacttctgatggataacaagaagcttgaagctttactgaaggagggcaaagacaggagtcctgttatgcagctttacactaaggaatcatctaggagctggaaactagcgggagctgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21428" stop="15318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21128" g_stop="20845" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20514" g_stop="20368" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="431" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20264" g_stop="20202" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="494" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20201" i_stop="15668" i_length="4534">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15667" g_stop="15618" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="544" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E304101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21128" e_stop="20845"/>
          <exon e_start="20514" e_stop="20368"/>
          <exon e_start="20264" e_stop="20202"/>
          <exon e_start="15667" e_stop="15618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATGGTCAGTTCCCCTCCCTTTGAATTAAAGTGGATTTTAGTAGCGCAATTGAAGTATACTAATTGTTTTGATAATGAAATTGAGCATTAGGTTTGTATTTTGTAGTAACTGAAGTACACTTATAATGAAATTGAAGTACACTAATTGCTCGGGCTGGGCTCAGCTTGATGCCCAGGCCTAATTACAGGTTAATACTTGTAGATGTGGGTTCGTATCCACTATATCTGTAGGATAATAGATTTGAACTGAGTATAAAGGGATGTTTTGGAGAATTTTCAACTAAATATGTACCATGCCTTCTAACTTGTTTGGAAGTCTCTTTTATTTGGATAGATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTGGTACCCTTTTTTCTTACTCAACATAGTTCTAATTCAAAATGTTCCAATCTTTAAATTGTAAGTTAACAAAGTGCTTGAGCTTAATTTGCCTTGTATTTTACAGATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAGGTATGCACATATCATTTTAATGAGCTATTGGCTTTTGAACTAAATTCAGTCTTTTTATTCTTCTTCATATTTTTATCCGGTCTAGTTAATTATTGATGCCAAATTCCAGTAATTATGCCATTCAAATTTGAACTTTTGGTGCATTAAGCATTAGTGACTACGTGACCAACTTCATATATATAGTTTATTCTTCCTTGATAATCATTCTAGCTGTCTTATGGTTTCTCTTCTCTATCTGTCCCATTTTTCACGTGGTGATGAAGTTAGTTGGAATAATGTGGTTACTTTAGTTCTTTTGTTTCTATTTAATGCGGAAGGTTATTAGTTCTTTCCATTTACTAGAGAACTTCGTGTTGTTATTTGACGACATAGAACTCTGTCCTTTTGTTTTGATAATTATGGGAGTCCAGGAAATCAAGTTCACATCTAAGTCTGTATGTCCACAATAATCTTAATGTTCTATTTCTGCTGGGTGAACAAATGAAAATCCTTGTTTTATATTCTATCTGCGTTGTTTCTAATTAATCCAGTTGGCACGAAGGAAAAGCAGTTGATAATCCTACTTCTCTGTGCAAAGGGTAATGAACTACTATGCAATGGCTAATGGGTATGACTTGAGGATTGTAAAAACTGATCCCACTAGGACTTGGTATATTTGTGAACTTGGAATGTCCTTTTAGATGTCCTATCTCACAGGATAAAATGAGTGTTGGGTTGAGTAACAAAACTTTGAAATCAGAACATAATTGTGATCCTTGTTACAAAAACCCAAGAGAACTCATTAGCACAATACTTGAAGAAAGAATAACTCCCTCTGTCCCAATTTAAGTGTCTTAGTTTAATTGTCCACAAAGTTTATGAAATAAAGAAATGTTTGAATCTTGTTGTCTTGAATTAAAGATGTGTGTAGTCCTTTAAATCTTGTGTTCTTAAATTTGCCTAGAAGAATGTTGGAACTGAAAAATATACTAAAGATAGAAAGAGACACTCTTTTTGGGACAGTCCAAAAATGAAAGACACTTAAAAAATCAGGATGGAGGGAGTACAAAACAATTCCAAGTACACTGTTAAGGAGCTTCAAGGATAATTATTATAATCTTGAAATATATTTAAAGGGCCATCCAAGTCATAAATATCGATTTTTTTCCGTCCTCAAGCCATACTTATTAGCCATTGCATAGTAGTTCATTATCCTTCTACCTTCCACAATATCAGAAAATGTCATATCCTTCTTCAACTCCCTTATAATTGTCCAGCCTACTAATAACCTCGATTTCTTCATCATACTCCAAATTGGCAAATCAAAAAATTATAGTCCTCAATAACATGATCATTATCAGATGCTACCTCAACGTCTACATGATATGTTTCGATATGATGCAAAATTATATGTTTATGGATGATCAAATTTGTCTCATCTGCAGCAAACAAGTGTATAACTCCCAACTCATGGCGAATAAGGTTCTGCAAAGCCCTAAAATACCATCATCTCCATCAATAATATAGTCCCTACTCGGGTCTGGCAACTAACAATTGTTTGACCTTAATAAACCTTAGCTCTTTCTTGAACTCTTCCACAAAAATCTTTATAAGAAAGCAGGTTTTTGGTCAAACCTATGACAGAAGTGCGCCAGTTTCTTACTATTGAATAAGTGAGGAGAAAAGACTCATTCACCCCATAGTGGAAACACACTTTCTCTTTGTCAATCATGCTTCGGTAAAGATCACATGCCAAGGAAAAAATGAGGGACCACATCAGCAACATACATAGGCTATACAAAATCTGTGAATATAAAAACTCTAGAATGACACAACACATTTTGGGACCATAAAAGAAAGGAACAGAACCATAAAAACACTGAAACTTTACATATTAAGCTATGATTTACATACTCAAAAATAAGAAACTCCACATTAACAGATTCTCTACCCACCACCTTAAATAATTATTTAAATAGAGAACCAGCCTTTATGAGCTATTCCTTTTGTCCTTCTCCCTCATAAACAAGCTATGAAGTCAACTTTGGCCATAGTTTTTTTCCCGATCAATTACCAAAAGAACTGAGTTAAGGCTTAAGGATTTGGGTCTGGTCGAGTAAGGGAATTGAGGAGAATGGATTATGGGTTTGGGCAAAAAGAGTCTGGGTCGGGTTCTAATATGGAGCGGTTAAAGCTAATTGGCATGGGTATTAAATAAGTGGGACATGTTAGTGATGTGACCTGTTTAATTTGATGTTATTGTCCAATTCAGTATTTTTAAACCAAAAATTGGTATTCAAACTGGCTATTTGAGCTGTTAGTGGTATGTGGCATGAATGTGCAAATTGTGTCATGGCAATGACAAAAATATGCACAACTAGTAATGAGTGGCACAGCAGAGCCATTTCTGATAGTTCAATGGTATATTTTTTCTTTTCTTCTTTTATTAAAAGACATGGGCAATCTCGTCATTTAGGTGGATTTAGTGGTCATGCTAATATGCGGAGTGGTAACCAAGGTAGGTCTCGTAAATCCTATTGGGCCTCAGTTTTGATTAAGAAATCAAATGCTGGGATTGCAAGCAAGTAGGTCACAAGAAAGCTGCTTGTCCCTGAACAAGAAACCAGGTGACCATTTTTATGAACCGAACCATAGCACTACCATCAAGGGCTTAACATGATTGGCCCGATGGTATCAAATCCCTATTTATGGATGTATTCTACACAAATCATTTTTCCATATAGGACACTAAATGCGTTACATTCTTGAATAGTTGAAACTCTTTCTTAGGACTGTTGTTAAGGTCTCGAAGGCAATTTCATTTGATAAAAAATTGGATATTCTTTTTGTATTTCCATCGAAGATGGGTTCATTTCTATAATACCATTGTTGAGGAGAACAACTTGTTCTTGAAATCATCATGGCTAAAAGATGAACATAATAATGGGTTCGAGAAAGAAGGAAAGTTGAGAACCCATCTGAGGTGGAAAAATTGTGGGCAAGTAAAATGAATAAAGTGAACTCATTTAGTTCAATGATGGGTTTGATGACTTTGTCCCAATTTTTTTTAATCTTGTTTGTTGGACTATATTCCCGTTGTGTTTATGAAATGGGTTTGTCATCCAATGTTACTTGGTCGAGTCTAAAGGAATTACAAGCATATAATGGTAGTCGATGTGAAGGAAAATACTGTAATTGACCTAAGCCAGTCAAAACATTTCCTACAAAAATTTTGATTGATGAGTTAGCTTTTGTTTAAATAACTCAGTTGTGTTTCTGATAATTGCTTTTGAGTATTGGTGTTAAAAAGGGGAAAAGAAAAAAGAATGAGATGTGGCAATCATTGAAGATGTGAAGGCGACCATAGCAGGTCGGAGAGGATGAGAAACAAAAGGAATTAATATGAGTTATATCAACCAAAAATTATGTTTTCATGCACTTAAAATTTAGGTGCATGACACCTATCATGTTGGTGATAGGCGTGCACGAGATATAATTTTGTCAAGTGAAAGTGTTCAAATAATCATTATGAAAGTTAGTGGTGGTGTCTATCTGAAAATTGATGCCATGTTTGAGGTATCTCTAGATTTGCCCATGATATTTGTTGTTGGCTAATATAAAAAGAATTAGAAATCCCATTCCAACATCTTCAGGGGGGAAAACAATATCAGCATCCAAGTTTGAATTCGAAATGGACCTTATTTTCTCTGTTTTAATATGGGATGAAGATGAATCACCATGCTTACCTTGCAACAGAGGAGAAAGTTGCTCTAACTCAATCAGATGAAATCAAGTTATCAGTTGCTTTCATCTTCATGTGAAAAACGGAGAACTATCTGTTATGAGTACTTGGCTTCTTATGAAAAGAGTTCCAATAGACAGCTGGCCTGAGAATTTTGAACTTCAGATTCTTCTTGGGGTAGTTTTGGAATTCCTTATTAATAAAGCCTTGCTGGATAGTTATATTGTTTGCATAATCTAAATCAGGTTCTCTTTACCCCTTTACCAATATTTCCATCAGTTCATTTTTTCCTTTTTTTTTTTTGGTAATCATGGTGTTTGCTTCAGTTTGTGCACACGTTGACTAATTCACGGGGCACATACTATCTTTCACCAGCACAAGTATCAGGACCAAGGCTTGGATAGATGGGAAGAAAGCGCCTAGGACTTTTATGTCCACTGTCATTTCGACCACATCATTGACCATTAGGCCCACACCCTTGCATACATATTACCGGTAGTGCTATATGTGGTTATTTTGAAATCCGTTGGATAACAATTTGTGATACTTAAATTGTCAATGTCGCTAATCTCTGTATTAGTTTGGTTCTCCTTTTATAATTTTGTTACATATTGCACTACAAGCTGATTCAGAGGTCCAGGTTCTGCTTGACTTTAAAGCTTGTTCTTGGCAATTATTTGTGTTTTCGTAATTTAGTCTTGTACAAAAATAGTTGTCTTGCTGGTATATGACTCTGATTTTATAGTTGTGTTCTTTAACAAGTTCATGTCAATATAGCAGTTTCCTTTACTTCAGCTCTTTTTCTTTATTCAGCTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGC</genome_strand>
        <mrna_strand>GAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG..........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG.......................................................................................................ATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E308169" ref_strand="+" ref_description="SGN-E308169 [cLEY-14-O10]">
      <seq>gagtgattgtttgaagagatgggtggcgaatcgaattacgagattcatcaaaacgcctacatcaagttaatccttcatgcccttaagcacaagacttcctccgtcaatggtgttcttcttggtagaatatccggcaacggcgacaacgtcgaaattgtcgaatctgttccgttgttccactctcagattggtttacttccaccactcgaaatttcacttatcatgattgaggagtactatgctgataaaggtttgagtattgtgggttattttcacgcaaatgaaagatccgatgattttgaggtcggaaatgtggccaagaatattggtgatcatatctacaaatatttccctcaagctgctttacttctgatggataacaagaagcttgaagctttactgaaggagggcaaagacaggagtcctgttatgcagctttacactaaggaatcatctaggagctggaaactagcgggagctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21369" stop="15319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21069" g_stop="20845" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20514" g_stop="20368" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="372" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20264" g_stop="20202" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="435" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20201" i_stop="15668" i_length="4534">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15667" g_stop="15619" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="484" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E308169" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21069" e_stop="20845"/>
          <exon e_start="20514" e_stop="20368"/>
          <exon e_start="20264" e_stop="20202"/>
          <exon e_start="15667" e_stop="15619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATGGTCAGTTCCCCTCCCTTTGAATTAAAGTGGATTTTAGTAGCGCAATTGAAGTATACTAATTGTTTTGATAATGAAATTGAGCATTAGGTTTGTATTTTGTAGTAACTGAAGTACACTTATAATGAAATTGAAGTACACTAATTGCTCGGGCTGGGCTCAGCTTGATGCCCAGGCCTAATTACAGGTTAATACTTGTAGATGTGGGTTCGTATCCACTATATCTGTAGGATAATAGATTTGAACTGAGTATAAAGGGATGTTTTGGAGAATTTTCAACTAAATATGTACCATGCCTTCTAACTTGTTTGGAAGTCTCTTTTATTTGGATAGATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTGGTACCCTTTTTTCTTACTCAACATAGTTCTAATTCAAAATGTTCCAATCTTTAAATTGTAAGTTAACAAAGTGCTTGAGCTTAATTTGCCTTGTATTTTACAGATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAGGTATGCACATATCATTTTAATGAGCTATTGGCTTTTGAACTAAATTCAGTCTTTTTATTCTTCTTCATATTTTTATCCGGTCTAGTTAATTATTGATGCCAAATTCCAGTAATTATGCCATTCAAATTTGAACTTTTGGTGCATTAAGCATTAGTGACTACGTGACCAACTTCATATATATAGTTTATTCTTCCTTGATAATCATTCTAGCTGTCTTATGGTTTCTCTTCTCTATCTGTCCCATTTTTCACGTGGTGATGAAGTTAGTTGGAATAATGTGGTTACTTTAGTTCTTTTGTTTCTATTTAATGCGGAAGGTTATTAGTTCTTTCCATTTACTAGAGAACTTCGTGTTGTTATTTGACGACATAGAACTCTGTCCTTTTGTTTTGATAATTATGGGAGTCCAGGAAATCAAGTTCACATCTAAGTCTGTATGTCCACAATAATCTTAATGTTCTATTTCTGCTGGGTGAACAAATGAAAATCCTTGTTTTATATTCTATCTGCGTTGTTTCTAATTAATCCAGTTGGCACGAAGGAAAAGCAGTTGATAATCCTACTTCTCTGTGCAAAGGGTAATGAACTACTATGCAATGGCTAATGGGTATGACTTGAGGATTGTAAAAACTGATCCCACTAGGACTTGGTATATTTGTGAACTTGGAATGTCCTTTTAGATGTCCTATCTCACAGGATAAAATGAGTGTTGGGTTGAGTAACAAAACTTTGAAATCAGAACATAATTGTGATCCTTGTTACAAAAACCCAAGAGAACTCATTAGCACAATACTTGAAGAAAGAATAACTCCCTCTGTCCCAATTTAAGTGTCTTAGTTTAATTGTCCACAAAGTTTATGAAATAAAGAAATGTTTGAATCTTGTTGTCTTGAATTAAAGATGTGTGTAGTCCTTTAAATCTTGTGTTCTTAAATTTGCCTAGAAGAATGTTGGAACTGAAAAATATACTAAAGATAGAAAGAGACACTCTTTTTGGGACAGTCCAAAAATGAAAGACACTTAAAAAATCAGGATGGAGGGAGTACAAAACAATTCCAAGTACACTGTTAAGGAGCTTCAAGGATAATTATTATAATCTTGAAATATATTTAAAGGGCCATCCAAGTCATAAATATCGATTTTTTTCCGTCCTCAAGCCATACTTATTAGCCATTGCATAGTAGTTCATTATCCTTCTACCTTCCACAATATCAGAAAATGTCATATCCTTCTTCAACTCCCTTATAATTGTCCAGCCTACTAATAACCTCGATTTCTTCATCATACTCCAAATTGGCAAATCAAAAAATTATAGTCCTCAATAACATGATCATTATCAGATGCTACCTCAACGTCTACATGATATGTTTCGATATGATGCAAAATTATATGTTTATGGATGATCAAATTTGTCTCATCTGCAGCAAACAAGTGTATAACTCCCAACTCATGGCGAATAAGGTTCTGCAAAGCCCTAAAATACCATCATCTCCATCAATAATATAGTCCCTACTCGGGTCTGGCAACTAACAATTGTTTGACCTTAATAAACCTTAGCTCTTTCTTGAACTCTTCCACAAAAATCTTTATAAGAAAGCAGGTTTTTGGTCAAACCTATGACAGAAGTGCGCCAGTTTCTTACTATTGAATAAGTGAGGAGAAAAGACTCATTCACCCCATAGTGGAAACACACTTTCTCTTTGTCAATCATGCTTCGGTAAAGATCACATGCCAAGGAAAAAATGAGGGACCACATCAGCAACATACATAGGCTATACAAAATCTGTGAATATAAAAACTCTAGAATGACACAACACATTTTGGGACCATAAAAGAAAGGAACAGAACCATAAAAACACTGAAACTTTACATATTAAGCTATGATTTACATACTCAAAAATAAGAAACTCCACATTAACAGATTCTCTACCCACCACCTTAAATAATTATTTAAATAGAGAACCAGCCTTTATGAGCTATTCCTTTTGTCCTTCTCCCTCATAAACAAGCTATGAAGTCAACTTTGGCCATAGTTTTTTTCCCGATCAATTACCAAAAGAACTGAGTTAAGGCTTAAGGATTTGGGTCTGGTCGAGTAAGGGAATTGAGGAGAATGGATTATGGGTTTGGGCAAAAAGAGTCTGGGTCGGGTTCTAATATGGAGCGGTTAAAGCTAATTGGCATGGGTATTAAATAAGTGGGACATGTTAGTGATGTGACCTGTTTAATTTGATGTTATTGTCCAATTCAGTATTTTTAAACCAAAAATTGGTATTCAAACTGGCTATTTGAGCTGTTAGTGGTATGTGGCATGAATGTGCAAATTGTGTCATGGCAATGACAAAAATATGCACAACTAGTAATGAGTGGCACAGCAGAGCCATTTCTGATAGTTCAATGGTATATTTTTTCTTTTCTTCTTTTATTAAAAGACATGGGCAATCTCGTCATTTAGGTGGATTTAGTGGTCATGCTAATATGCGGAGTGGTAACCAAGGTAGGTCTCGTAAATCCTATTGGGCCTCAGTTTTGATTAAGAAATCAAATGCTGGGATTGCAAGCAAGTAGGTCACAAGAAAGCTGCTTGTCCCTGAACAAGAAACCAGGTGACCATTTTTATGAACCGAACCATAGCACTACCATCAAGGGCTTAACATGATTGGCCCGATGGTATCAAATCCCTATTTATGGATGTATTCTACACAAATCATTTTTCCATATAGGACACTAAATGCGTTACATTCTTGAATAGTTGAAACTCTTTCTTAGGACTGTTGTTAAGGTCTCGAAGGCAATTTCATTTGATAAAAAATTGGATATTCTTTTTGTATTTCCATCGAAGATGGGTTCATTTCTATAATACCATTGTTGAGGAGAACAACTTGTTCTTGAAATCATCATGGCTAAAAGATGAACATAATAATGGGTTCGAGAAAGAAGGAAAGTTGAGAACCCATCTGAGGTGGAAAAATTGTGGGCAAGTAAAATGAATAAAGTGAACTCATTTAGTTCAATGATGGGTTTGATGACTTTGTCCCAATTTTTTTTAATCTTGTTTGTTGGACTATATTCCCGTTGTGTTTATGAAATGGGTTTGTCATCCAATGTTACTTGGTCGAGTCTAAAGGAATTACAAGCATATAATGGTAGTCGATGTGAAGGAAAATACTGTAATTGACCTAAGCCAGTCAAAACATTTCCTACAAAAATTTTGATTGATGAGTTAGCTTTTGTTTAAATAACTCAGTTGTGTTTCTGATAATTGCTTTTGAGTATTGGTGTTAAAAAGGGGAAAAGAAAAAAGAATGAGATGTGGCAATCATTGAAGATGTGAAGGCGACCATAGCAGGTCGGAGAGGATGAGAAACAAAAGGAATTAATATGAGTTATATCAACCAAAAATTATGTTTTCATGCACTTAAAATTTAGGTGCATGACACCTATCATGTTGGTGATAGGCGTGCACGAGATATAATTTTGTCAAGTGAAAGTGTTCAAATAATCATTATGAAAGTTAGTGGTGGTGTCTATCTGAAAATTGATGCCATGTTTGAGGTATCTCTAGATTTGCCCATGATATTTGTTGTTGGCTAATATAAAAAGAATTAGAAATCCCATTCCAACATCTTCAGGGGGGAAAACAATATCAGCATCCAAGTTTGAATTCGAAATGGACCTTATTTTCTCTGTTTTAATATGGGATGAAGATGAATCACCATGCTTACCTTGCAACAGAGGAGAAAGTTGCTCTAACTCAATCAGATGAAATCAAGTTATCAGTTGCTTTCATCTTCATGTGAAAAACGGAGAACTATCTGTTATGAGTACTTGGCTTCTTATGAAAAGAGTTCCAATAGACAGCTGGCCTGAGAATTTTGAACTTCAGATTCTTCTTGGGGTAGTTTTGGAATTCCTTATTAATAAAGCCTTGCTGGATAGTTATATTGTTTGCATAATCTAAATCAGGTTCTCTTTACCCCTTTACCAATATTTCCATCAGTTCATTTTTTCCTTTTTTTTTTTTGGTAATCATGGTGTTTGCTTCAGTTTGTGCACACGTTGACTAATTCACGGGGCACATACTATCTTTCACCAGCACAAGTATCAGGACCAAGGCTTGGATAGATGGGAAGAAAGCGCCTAGGACTTTTATGTCCACTGTCATTTCGACCACATCATTGACCATTAGGCCCACACCCTTGCATACATATTACCGGTAGTGCTATATGTGGTTATTTTGAAATCCGTTGGATAACAATTTGTGATACTTAAATTGTCAATGTCGCTAATCTCTGTATTAGTTTGGTTCTCCTTTTATAATTTTGTTACATATTGCACTACAAGCTGATTCAGAGGTCCAGGTTCTGCTTGACTTTAAAGCTTGTTCTTGGCAATTATTTGTGTTTTCGTAATTTAGTCTTGTACAAAAATAGTTGTCTTGCTGGTATATGACTCTGATTTTATAGTTGTGTTCTTTAACAAGTTCATGTCAATATAGCAGTTTCCTTTACTTCAGCTCTTTTTCTTTATTCAGCTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATG</genome_strand>
        <mrna_strand>GAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG..........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG.......................................................................................................ATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E231688" ref_strand="+" ref_description="SGN-E231688 [cLED-4-M18]">
      <seq>cggagtagtcaaagacgcagaaacagattcgatcggccggccgccggaataaggattctcagagtgattgtttgaagagatgggtggcgaatcgaattacgagattcatcaaaacgcctacatcaagttaatccttcatgcccttaagcacaagacttcctccgtcaatggtgttcttcttggtagaatatccggcaacggcgacaacgtcgaaattgtcgaatctgttccgttgttccactctcagattggtttacttccaccactcgaaatttcacttatcatgattgaggagtactatgctgataaaggtttgagtattgtgggttattttcacgcaaatgaaagatccgatgattttgaggtcggaaatgtggccaagaatattggtgatcatatctacaaatatttccctcaagctgctttacttctgatggataacaagaagcttgaagctttactgaaggagggcaaagacaggagtcctgttatgcagctttacactaaggaatcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21430" stop="15347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21130" g_stop="20845" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20514" g_stop="20368" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="433" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20264" g_stop="20202" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="497" r_length="64" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20201" i_stop="19672" i_length="530">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19671" g_stop="19650" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="517" r_length="20" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E231688" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21130" e_stop="20845"/>
          <exon e_start="20514" e_stop="20368"/>
          <exon e_start="20264" e_stop="20202"/>
          <exon e_start="19671" e_stop="19650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATGGTCAGTTCCCCTCCCTTTGAATTAAAGTGGATTTTAGTAGCGCAATTGAAGTATACTAATTGTTTTGATAATGAAATTGAGCATTAGGTTTGTATTTTGTAGTAACTGAAGTACACTTATAATGAAATTGAAGTACACTAATTGCTCGGGCTGGGCTCAGCTTGATGCCCAGGCCTAATTACAGGTTAATACTTGTAGATGTGGGTTCGTATCCACTATATCTGTAGGATAATAGATTTGAACTGAGTATAAAGGGATGTTTTGGAGAATTTTCAACTAAATATGTACCATGCCTTCTAACTTGTTTGGAAGTCTCTTTTATTTGGATAGATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTGGTACCCTTTTTTCTTACTCAACATAGTTCTAATTCAAAATGTTCCAATCTTTAAATTGTAAGTTAACAAAGTGCTTGAGCTTAATTTGCCTTGTATTTTACAGATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAG-GTATGCACATATCATTTTAATGAGCTATTGGCTTTTGAACTAAATTCAGTCTTTTTATTCTTCTTCATATTTTTATCCGGTCTAGTTAATTATTGATGCCAAATTCCAGTAATTATGCCATTCAAATTTGAACTTTTGGTGCATTAAGCATTAGTGACTACGTGACCAACTTCATATATATAGTTTATTCTTCCTTGATAATCATTCTAGCTGTCTTATGGTTTCTCTTCTCTATCTGTCCCATTTTTCACGTGGTGATGAAGTTAGTTGGAATAATGTGGTTACTTTAGTTCTTTTGTTTCTATTTAATGCGGAAGGTTATTAGTTCTTTCCATTTACTAGAGAACTTCGTGTTGTTATTTGACGACATAGAACTCTGTCCTTTTGTTTTGATAATTATGGGAGTCCAGGAAATCAAGTTCACATCTAAGTCTGTATGTCCACAATAATCTTAATGTTCTATTTCTGCTGGGTGAACAAATGAAAATCCTTGTTTTATATTCTATCTGCGTTGTTTCTAATTAATCCAGTTGGCACGAAGGAAAAGCAGTT</genome_strand>
        <mrna_strand>CGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG..........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG.......................................................................................................ATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACACTAAGG--AATCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E258637" ref_strand="+" ref_description="SGN-E258637 [cLEG-50-O13]">
      <seq>aaaattctccaagtacactagagagcatcggagtagtcaaagacgcagaaacagattcgatcggccggccgccggaataaggattctcagagtgattgtttgaagagatgggtggcgaatcgaattacgagattcatcaaaacgcctacatcaagttaatccttcatgcccttaagcacaagacttcctccgtcaatggtgttcttcttggtagaatatccggcaacggcgacaacgtcgaaattgtcgaatctgttccgttgttccactctcagattggtttacttccaccactcgaaatttcacttatcatgattgaggagtactatgctgataaaggtttgagtattgtgggttattttcacgcaaatgaaagatccgatgattttgaggtcggaaatgtggccaagaatattggtgatcatatctacaaatatttccctcaagctgctttacttctgatggataacaagaagcttgaagctttactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21458" stop="19934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21158" g_stop="20845" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20514" g_stop="20368" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="461" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20264" g_stop="20234" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="492" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E258637" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21158" e_stop="20845"/>
          <exon e_start="20514" e_stop="20368"/>
          <exon e_start="20264" e_stop="20234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCTCCAAGTACACTAGAGAGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATGGTCAGTTCCCCTCCCTTTGAATTAAAGTGGATTTTAGTAGCGCAATTGAAGTATACTAATTGTTTTGATAATGAAATTGAGCATTAGGTTTGTATTTTGTAGTAACTGAAGTACACTTATAATGAAATTGAAGTACACTAATTGCTCGGGCTGGGCTCAGCTTGATGCCCAGGCCTAATTACAGGTTAATACTTGTAGATGTGGGTTCGTATCCACTATATCTGTAGGATAATAGATTTGAACTGAGTATAAAGGGATGTTTTGGAGAATTTTCAACTAAATATGTACCATGCCTTCTAACTTGTTTGGAAGTCTCTTTTATTTGGATAGATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTGGTACCCTTTTTTCTTACTCAACATAGTTCTAATTCAAAATGTTCCAATCTTTAAATTGTAAGTTAACAAAGTGCTTGAGCTTAATTTGCCTTGTATTTTACAGATGGATAACAAGAAGCTTGAAGCTTTACTGA</genome_strand>
        <mrna_strand>AAAATTCTCCAAGTACACTAGAGAGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG..........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG.......................................................................................................ATGGATAACAAGAAGCTTGAAGCTTTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E232114" ref_strand="+" ref_description="SGN-E232114 [cLED-7-J12]">
      <seq>cggagtagtcaaagacgcagaaacagattcgatcggccggccgccggaataaggattctcagagtgattgtttgaagagatgggtggcgaatcgaattacgagattcatcaaaacgcctacatcaagttaatccttcatgcccttaagcacaagacttcctccgtcaatggtgttcttcttggtagaatatccggcaacggcgacaacgtcgaaattgtcgaatctgttccgttgttccactctcagattggtttacttccaccactcgaaatttcacttatcatgattgaggagtactatgctgataaaggtttgagtattgtgggttattttcacgcaaatgaaagatccgatgattttgaggtcggaaatgtggccaagaatattggtgatcatatctacaaatatttccctcaagctgctttacttctgatggataacaagaagcttgaagctctactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21430" stop="19934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21130" g_stop="20845" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20514" g_stop="20368" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="433" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20264" g_stop="20234" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="464" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E232114" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21130" e_stop="20845"/>
          <exon e_start="20514" e_stop="20368"/>
          <exon e_start="20264" e_stop="20234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATGGTCAGTTCCCCTCCCTTTGAATTAAAGTGGATTTTAGTAGCGCAATTGAAGTATACTAATTGTTTTGATAATGAAATTGAGCATTAGGTTTGTATTTTGTAGTAACTGAAGTACACTTATAATGAAATTGAAGTACACTAATTGCTCGGGCTGGGCTCAGCTTGATGCCCAGGCCTAATTACAGGTTAATACTTGTAGATGTGGGTTCGTATCCACTATATCTGTAGGATAATAGATTTGAACTGAGTATAAAGGGATGTTTTGGAGAATTTTCAACTAAATATGTACCATGCCTTCTAACTTGTTTGGAAGTCTCTTTTATTTGGATAGATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTGGTACCCTTTTTTCTTACTCAACATAGTTCTAATTCAAAATGTTCCAATCTTTAAATTGTAAGTTAACAAAGTGCTTGAGCTTAATTTGCCTTGTATTTTACAGATGGATAACAAGAAGCTTGAAGCTTTACTGA</genome_strand>
        <mrna_strand>CGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG..........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG.......................................................................................................ATGGATAACAAGAAGCTTGAAGCTCTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E250382" ref_strand="+" ref_description="SGN-E250382 [cLEG-6-G2]">
      <seq>caagttaatccttcatgcccttaagcacaagacttcctccgtcaatggtgttcttcttggtagaatatccggcaacggcgacaacgtcgaaattgtcgaatctgttccgttgttccactctcagattggtttacttccaccactcgaaatttcacttatcatgattgaggagtactatgctgataaaggtttgagtattgtgggttattttcacgcaaatgaaagatccgatgatttttttgggcggtcggaaatgtggccaagaatattggtgatcatatctacaaatatttccctcagctgcttacttctgatggaaacaagaagcttgaagctttactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21307" stop="19934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21007" g_stop="20845" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20514" g_stop="20368" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="313" r_length="150" r_score="0.912"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20264" g_stop="20234" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="343" r_length="30" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E250382" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21007" e_stop="20845"/>
          <exon e_start="20514" e_stop="20368"/>
          <exon e_start="20264" e_stop="20234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATGGTCAGTTCCCCTCCCTTTGAATTAAAGTGGATTTTAGTAGCGCAATTGAAGTATACTAATTGTTTTGATAATGAAATTGAGCATTAGGTTTGTATTTTGTAGTAACTGAAGTACACTTATAATGAAATTGAAGTACACTAATTGCTCGGGCTGGGCTCAGCTTGATGCCCAGGCCTAATTACAGGTTAATACTTGTAGATGTGGGTTCGTATCCACTATATCTGTAGGATAATAGATTTGAACTGAGTATAAAGGGATGTTTTGGAGAATTTTCAACTAAATATGTACCATGCCTTCTAACTTGTTTGGAAGTCTCTTTTATTTGGATAGATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGA---TTTT--GAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTGGTACCCTTTTTTCTTACTCAACATAGTTCTAATTCAAAATGTTCCAATCTTTAAATTGTAAGTTAACAAAGTGCTTGAGCTTAATTTGCCTTGTATTTTACAGATGGATAACAAGAAGCTTGAAGCTTTACTGA</genome_strand>
        <mrna_strand>CAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG..........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTTTTGGGCGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTC-AGCTGC-TTACTTCTG.......................................................................................................ATGGA-AACAAGAAGCTTGAAGCTTTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E240542" ref_strand="+" ref_description="SGN-E240542 [cLED-21-M19]">
      <seq>tcaaagacgcagaaacagattcgatcggccggccgccggaataaggattctcagagtgattgtttgaagagatgggtggcgaatcgaattacgagattcatcaaaacgcctacatcaagttaatccttcatgcccttaagcacaagacttcctccgtcaatggtgttcttcttggtagaatatccggcaacggcgacaacgtcgaaattgtcgaatctgttccgttgttccactctcagattggtttacttccaccactcgaaatttcacttatcatgattgaggagtactatgctgataaaggtttgagtattgtgggttattttcacgcaaatgaaagatccgatgattttgaggtcggaaatgtggccaagaatattggtgatcatatctacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21422" stop="20095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21122" g_stop="20845" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20514" g_stop="20395" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="398" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E240542" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21122" e_stop="20845"/>
          <exon e_start="20514" e_stop="20395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATGGTCAGTTCCCCTCCCTTTGAATTAAAGTGGATTTTAGTAGCGCAATTGAAGTATACTAATTGTTTTGATAATGAAATTGAGCATTAGGTTTGTATTTTGTAGTAACTGAAGTACACTTATAATGAAATTGAAGTACACTAATTGCTCGGGCTGGGCTCAGCTTGATGCCCAGGCCTAATTACAGGTTAATACTTGTAGATGTGGGTTCGTATCCACTATATCTGTAGGATAATAGATTTGAACTGAGTATAAAGGGATGTTTTGGAGAATTTTCAACTAAATATGTACCATGCCTTCTAACTTGTTTGGAAGTCTCTTTTATTTGGATAGATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAA</genome_strand>
        <mrna_strand>TCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG..........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E324462" ref_strand="+" ref_description="SGN-E324462 [cTOC-6-H3]">
      <seq>agacgcagaaacagattcgatcggccggccgccggaataaggaggctcagagtgattgattgaagagatgggtggcgaatcgaattacgagattcatcaaaacgcctacatcaagttaatccttcatgcccttaagcacaagacttcctccgtcaatggtgttcttcttggtagaatatccggcaacggcgacaacgtcgaaattgtcgaatctgttccgttgttccactctcagattggtttacttgcaccactcgaaatttcacttatcatgattgaggagtactatgctgataaaggtttgagtattgtgggttatcttcacgcaaatgaaagatccgatgattttgaggtcggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21418" stop="20127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21118" g_stop="20845" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.471" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20514" g_stop="20427" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="362" r_length="88" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E324462" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21118" e_stop="20845"/>
          <exon e_start="20514" e_stop="20427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATGGTCAGTTCCCCTCCCTTTGAATTAAAGTGGATTTTAGTAGCGCAATTGAAGTATACTAATTGTTTTGATAATGAAATTGAGCATTAGGTTTGTATTTTGTAGTAACTGAAGTACACTTATAATGAAATTGAAGTACACTAATTGCTCGGGCTGGGCTCAGCTTGATGCCCAGGCCTAATTACAGGTTAATACTTGTAGATGTGGGTTCGTATCCACTATATCTGTAGGATAATAGATTTGAACTGAGTATAAAGGGATGTTTTGGAGAATTTTCAACTAAATATGTACCATGCCTTCTAACTTGTTTGGAAGTCTCTTTTATTTGGATAGATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATG</genome_strand>
        <mrna_strand>AGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGAGGCTCAGAGTGATTGATTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTGCACCACTCGAAATTTCACTTATCATG..........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATCTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E240548" ref_strand="+" ref_description="SGN-E240548 [cLED-21-A24]">
      <seq>gtcaaagacgcagaaacagattcgatcggccggccgccggaataaggattctcagagtgattgtttgaagagatgggtggcgaatcgaattacgagattcatcaaaacgcctacatcaagttaatccttcatgcccttaagcacaagacttcctccgtcaatggtgttcttcttggtagaatatccggcaacggcgacaacgtcgaaattgtcgaatctgttccgttgttccactctcagattggtttacttccaccactcgaaatttcacttatcatgattgaggagtactatgctgataaaggtttgagtattgtgggttattttcacgcaaatgaaagatccgatgattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21423" stop="20139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21123" g_stop="20845" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20514" g_stop="20439" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="355" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E240548" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21123" e_stop="20845"/>
          <exon e_start="20514" e_stop="20439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATGGTCAGTTCCCCTCCCTTTGAATTAAAGTGGATTTTAGTAGCGCAATTGAAGTATACTAATTGTTTTGATAATGAAATTGAGCATTAGGTTTGTATTTTGTAGTAACTGAAGTACACTTATAATGAAATTGAAGTACACTAATTGCTCGGGCTGGGCTCAGCTTGATGCCCAGGCCTAATTACAGGTTAATACTTGTAGATGTGGGTTCGTATCCACTATATCTGTAGGATAATAGATTTGAACTGAGTATAAAGGGATGTTTTGGAGAATTTTCAACTAAATATGTACCATGCCTTCTAACTTGTTTGGAAGTCTCTTTTATTTGGATAGATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTG</genome_strand>
        <mrna_strand>GTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG..........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E297224" ref_strand="+" ref_description="SGN-E297224 [cLET-29-N20]">
      <seq>agcatcggagtagtcaaagacgcagaaacagattcgatcggccggccgccggaataaggattctcagagtgattgtttgaagagatgggtggcgaatcgaattacgagattcatcaaaacgcctacatcaagttaatccttcatgcccttaagcacaagacttcctccgtcaatggtgttcttcttggtagaatatccggcaacggcgacaacgtcgaaattgtcgaatctgttccgttgttccactctcagattggtttacttccaccactcgaaatttcacttatcatgattgaggagtactatgctgataaaggtttgagtattgtgggttattttcacgcaaatgaaagatccgatgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21435" stop="20141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21135" g_stop="20845" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20514" g_stop="20441" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="365" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E297224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21135" e_stop="20845"/>
          <exon e_start="20514" e_stop="20441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATGGTCAGTTCCCCTCCCTTTGAATTAAAGTGGATTTTAGTAGCGCAATTGAAGTATACTAATTGTTTTGATAATGAAATTGAGCATTAGGTTTGTATTTTGTAGTAACTGAAGTACACTTATAATGAAATTGAAGTACACTAATTGCTCGGGCTGGGCTCAGCTTGATGCCCAGGCCTAATTACAGGTTAATACTTGTAGATGTGGGTTCGTATCCACTATATCTGTAGGATAATAGATTTGAACTGAGTATAAAGGGATGTTTTGGAGAATTTTCAACTAAATATGTACCATGCCTTCTAACTTGTTTGGAAGTCTCTTTTATTTGGATAGATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTT</genome_strand>
        <mrna_strand>AGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG..........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E559925" ref_strand="+" ref_description="SGN-E559925 [19498]">
      <seq>ctcaagtacatcggagtagtcaaagacgcagtcagattcgatcggccggcaaccggaatagggattctcatagtgattgtttgaagagatgggtggcgaatcgaattacgagattcatcaaaatgcctacatcaagttaatccttcatgcccttaagcacaagacttcctccgtcaacggtgttcttcttggccgaatctccggcaacggcgacaacgttgaaattgtcgaatccgttccgtttttccactctcagattggtttacttccaccactcgaaatttcacttatcatgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21441" stop="20543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21141" g_stop="20845" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E559925" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21141" e_stop="20845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAGAGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG</genome_strand>
        <mrna_strand>CTCAAGTACATCGGAGTAGTCAAAGACGCAG--TCAGATTCGATCGGCCGGCAACCGGAATAGGGATTCTCATAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAATGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAACGGTGTTCTTCTTGGCCGAATCTCCGGCAACGGCGACAACGTTGAAATTGTCGAATCCGTTCCGTTTTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E396075" ref_strand="+" ref_description="SGN-E396075 [TUS-19-A9]">
      <seq>tcggattagtcaaagacgcagaaacagattcgatcggccggccgccggaataaggattctcagagtgattgtttgatgagatgggtggcgaatcgaattacgagattcatcaaaacgcctacatcaagttaatccttcatgcccttaagcacaagacttcctccgtcaatggtgttcttcttggtagaatatccggcaacggcgacaacgtcgaaattgtcgaatctgttccgttgttccagtctcagattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21431" stop="20580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21131" g_stop="20880" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E396075" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21131" e_stop="20880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTG</genome_strand>
        <mrna_strand>TCGGATTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGATGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCAGTCTCAGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E734504" ref_strand="+" ref_description="SGN-E734504 [LB12DD05]">
      <seq>ccgggaatattctaatctgcaaaggtgctgaggttgcattgctggactatggacaagttaaggatcttccagaaaatctcaggcttggatatgctaaacttattcttgctattgctgatggcgatgctactagggccaaagaaagctttaaggagcttggcatagacaccctaagcaaatgtgaggatgagcagaaagaaatgcttaaattggcacaagggatgtttgacacaaaattaccacctggtgtaaagatgatgcaacctttttcggaagaatcttcagtcaaaaaaattgcagttgaggcttttccagaagaacttttctcgattcttcgaactctgcaaatactgagagggcttagtgttggtctgggaataagtcattcatgtgctgaacagtggagacctattgctgaggaagctttgtacaatgctggaagattgacagatatagatatgaagcgatcacacagacatagaaccagaagaaagtccggaaaataacatctaacgagtcaagagaagcaaagtatgaacgaaatcggagatagtcatgttgctaaatttttggagaaagagcaatggtttgcttttgtggcaaagcttttcaaggacaagtgaccacaaaaacactacatgctttgtatttttttttttctcttcctgtggccttgcaacaatttctgtacaacatggcctgtaattgaattgataattggcaaaacaggtaaagagagatgcattttgatcatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="25276" stop="21511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24975" g_stop="24944" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24943" i_stop="24841" i_length="103">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24840" g_stop="24722" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="151" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24721" i_stop="24371" i_length="351">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.894" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24370" g_stop="24217" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="305" r_length="154" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24216" i_stop="22580" i_length="1637">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.300" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22579" g_stop="22435" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="450" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22434" i_stop="22114" i_length="321">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22113" g_stop="21810" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="757" r_length="307" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E734504" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24975" e_stop="24944"/>
          <exon e_start="24840" e_stop="24722"/>
          <exon e_start="24370" e_stop="24217"/>
          <exon e_start="22579" e_stop="22435"/>
          <exon e_start="22113" e_stop="21810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGAATATTCTAATCTGCAAAGGTGCTGAGGTTAGTATGCATCTTTTCGTTTTCTTCTTTCAATTAGGTTATCACATATAATTGTTCTTGTTTAGCTTTCTGACAAGGATCGCGGCATTCTTCTCTTATTAAGGTTGCATTGCTGGACTATGGACAAGTTAAGGATCTTCCAGAAAATCTCAGGCTTGGATATGCTAAACTTATTCTTGCTATTGCTGATGGCAATGCTACTACGGCCAAAGAAAGCTTTAAGTGAGAAACTTTTCAATGAATCTCTTGTTATAATTTCAAGAATAGTTTTCTTCCTGACGAAGCAACATGATGCAAAATACTAATGGGAGATCTCAAAAGCTTGAAATCACAAATGTTCTTCCAAAAAATAAACAGAAAAGGAAGTAGTAGTAGTTTACGTATTAGTTATTCAAGTGTGAAGAATGGAAACTGGAGTTGACTTTTTGGAGCGAAACCAACTACTCTTGGCACTAATAACAGAGATGGAAATGATTTTTTTAACTCTATTACGGAGTTAATGTTATTGCAATAATTACATTCTTTTAGTACTGATATGTTTCCAATCTTTGAACTTCTCACTTTGAATTAAAGGGAGCTTGGCATAGATACCCTAAGCAAATGTGAGGATGAGCAGAAAGAAATGCTTAAATTGGCACAAGGGATGTTTGACACAAAATTACCACCTGGTGTAAAGATGATGCAACCTTTCTCAGAAGAATCTTCAGTCAAAAAAATTGCAGTTGAGGTATGCGGTACCTGCTCTCTCAACTTATGGTATTTACCAGTTCCCAATGTTAATCATTTTAGAAAGGGTTGCATTTACCATTCAAGAATCTAAGGATCTTTTCCACATGATACTACCTTCCCCATTGAGGTCTATCAGTTTGATTAGTGATGGATATTGAAGACAAGAGTTGACGCAGTTGTATTTTGATAACCCTGACTAAAGAATTTGAAATTTTATCAGTCGTCATGTCTTTGTTGATGCTTTGGTAATAAGGAACTATAGAATTAGTGAAGAGAGTACAGAGAAGAGTTTATCTTTTATGAAAGTGATCATAATTTTGGGACACTGCAAAAGGAGTTTCTTTCCATTTAAAGTTAATAACTTGCTTAGGATGGCATTGGGAGGATGAATTGATTTGAGAAGTAAATCTTTAGCAGAACAATATTCATTGCTGAACTCTATCTATACATAATTACCTCAAATTCCTATTTATTTGGAGCTTCGACTCAAAAGCATGGACATCTCAGAAAAAAATTACGTGGGGTCAAACAATCTTCTGATGGGAAGTTATAATAAATTCTATGCATTTTGTTATAAGGACATATATATTGAAAAAATGAGCTGTTTGGTTCAAGTATTGGTTGGAGGATATTGTGATCAATAGAGATAGAAGGCCACATAGTTTGTGGTCATGCAAATAAACTTAGCAGACTGCCGATCTATAGCCACAATAGACTGATCTGTATCCCTGGGCTATGTTGCTCGGACTCTTAAAAAATTATATCAGGTGCATGTCGGATCCTCCAACAATAGTGTATTTTAGAGGATCTTACACGGGTGCGGCAACATTTTTGAAGAGTCCGAACAACATAGTCCCTACGTCTTTCAGCCAACTAAATCAATATAGTGACTACTTTCACATTTTGCACCTGTGCTTAAAATGCAACTACACAAATCATTATACTAGACGAATTCTTATAAGCTTCTAGAACAAATTCTGCGGAAAGGAAACTAAAATATTGAAATTGAAGCCATGGCCATTTGACAAGTACTTACAAGTACCATGATTAAGCTTACACTTTGATTACTATACATACACTAGACATGCTACTAATCTGGTATTCCTCAATCTTTATGATAATGGAGAAATGTTTAGCCAAGAATCATGAAAGAGAGGAACTTTTTGACATCGTTCAGCAAAGGCTGAGTAAGTTTTTATTGTTTCCATTAGAAATGTTGTCTCTTAAATGATTGTGGTGCTCTATAAAAAAGAAAAGAGAAAGGCCACATCATGTCGAAATTGGAAGTCTTTCACTTAAGATGCAAATGCAATAATGTCCAACCGTCATGAAAATGACTCTGGATCATTCTGAATTTCAGTCTCTTAAAAATTTGTGAAAATTCAGCTCAATTAGGTCCCATATAATCTGGATTTTAGCTTCTGTGACTTAAAAGTGGTCTGTTTTGTTCTCTTGCATTATGCTCCGCAAATGATAAGGTGGATCTTGTACCTTCTTAAGTTCTTTGTATCACTTAGTACAGTGAATGACGCCTTGTATCACCGGCCTTTCTTATTTGCTGATTAATTTTGTTAAATGTACTTGGTGACATGAGTACTAAGGTCAAAATGTGAACACAATTCTATTTGATGTTAGGCTTTTCCAGAAGAACTTTTCTCGATTCTTCGAACTCTGCAAATACTGAGAGGGCTTAGTGTTGGTCTGGGAATAAGTCATTCATGTGCTGAACAGTGGAGACCTATTGCTGAGGAAGCTTTGTATAATGCTGGAAGATTGACAGGTTAGTCCCTAATACGACAATGCATTTTTTTGTTCAACTAAACAAGTCAATCTATTGCCAAGCAAGAACATATCGTCTTCATTTTCATGCCACATTAATGTTATTTAGTCATTTCTTCTGTTACTGACTGAAATGGAGTATGTAGTGATACACAGATGAGTATTCGAATACTATAATCACTACAGTTACTAGGCCCATTCTTGTTTGATGATTCATTAGGATCTATACAGCTCTAACAATGAGCCATAGCCATTATACATCTTATTCATTTCCTGGTTTAAGATCTAACAATGATATGCAATTGTTACTTTTTTGTTTCAGATATAGATATGAAGCGATCACATAGACATAGAACCAGAAGAAAGTCCGGAAAATAACATCTAGCGAGTCAAGAGGAGCAAAGTATGAACGAAATCGGAGATGGTCATATTGCTAAATTTTTGGAGAAAGAGCAATGGTTTGCTTTTGTAGCAAAGCTTTTCAAGGACAAGTGACCACAAAAACACTACATTGCTTTGTA----TTTTTTTCTCTTCCTGTGGCCTTGCAACAATTTCTGTACAACATGGCCTGTAATTGAATTGATAATTGGCAAAACAGGTAAAAAGAGATGCATTTTGATCATGCC</genome_strand>
        <mrna_strand>CCGGGAATATTCTAATCTGCAAAGGTGCTGAG.......................................................................................................GTTGCATTGCTGGACTATGGACAAGTTAAGGATCTTCCAGAAAATCTCAGGCTTGGATATGCTAAACTTATTCTTGCTATTGCTGATGGCGATGCTACTAGGGCCAAAGAAAGCTTTAA...............................................................................................................................................................................................................................................................................................................................................................GGAGCTTGGCATAGACACCCTAAGCAAATGTGAGGATGAGCAGAAAGAAATGCTTAAATTGGCACAAGGGATGTTTGACACAAAATTACCACCTGGTGTAAAGATGATGCAACCTTTTTCGGAAGAATCTTCAGTCAAAAAAATTGCAGTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTCCAGAAGAACTTTTCTCGATTCTTCGAACTCTGCAAATACTGAGAGGGCTTAGTGTTGGTCTGGGAATAAGTCATTCATGTGCTGAACAGTGGAGACCTATTGCTGAGGAAGCTTTGTACAATGCTGGAAGATTGACAG.................................................................................................................................................................................................................................................................................................................................ATATAGATATGAAGCGATCACACAGACATAGAACCAGAAGAAAGTCCGGAAAATAACATCTAACGAGTCAAGAGAAGCAAAGTATGAACGAAATCGGAGATAGTCATGTTGCTAAATTTTTGGAGAAAGAGCAATGGTTTGCTTTTGTGGCAAAGCTTTTCAAGGACAAGTGACCACAAAAACACTACA-TGCTTTGTATTTTTTTTTTTCTCTTCCTGTGGCCTTGCAACAATTTCTGTACAACATGGCCTGTAATTGAATTGATAATTGGCAAAACAGGTAAAGAGAGATGCATTTTGATCATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E740770" ref_strand="+" ref_description="SGN-E740770 [LC22DB12]">
      <seq>cgtccaaccgtcgtgaaaatgactctggatcattctgaatttcagtctcttaaaaatttgtgaaaattcagctcaattaggtcccatataatctggattttagcttctgtgacttaaaagtggtctgttttgttctcttgcattatgctccacaaatgataaggtggatcttgtaccttcttaagttctttgcatcacttagtacagtgaatgacgccttgtatcaccggcctttcttatttgctgattaattttgttaaatgtacttggtgacatgagtactaaggtcaaaatgtgaacacaattctatttgatgttaggcttttccagaagaacttttctcgattcttcgaactctgcaaatactgagagggcttagtgttggtctgggaataagtcattcatgtgctgaacagtggagacctattgctgaggaagctttgtacaatgctggaagattgacagatatagatatgaagcgatcacacagacatagaaccagaagaaagtccggaaaataacatctaacgagtcaagagaagcaaagtatgaacgaaatcggagatagtcatgttgctaaatttttggagaaagagcaatggtttgcttttgtggcaaagcttttcaaggacgagtgaccacaaaaacactacatgctttgtatttttttttttctcttcctgtggccttgcaacaatttctgtacaacatggcctgtaattgaattgataattggcaaaacaggtaaagagagatgcattttgatcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="23198" stop="21514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22899" g_stop="22435" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22434" i_stop="22114" i_length="321">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22113" g_stop="21815" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="767" r_length="302" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="768" polyA_stop="779"/>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E740770" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22899" e_stop="22435"/>
          <exon e_start="22113" e_stop="21815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCAACCGTCATGAAAATGACTCTGGATCATTCTGAATTTCAGTCTCTTAAAAATTTGTGAAAATTCAGCTCAATTAGGTCCCATATAATCTGGATTTTAGCTTCTGTGACTTAAAAGTGGTCTGTTTTGTTCTCTTGCATTATGCTCCGCAAATGATAAGGTGGATCTTGTACCTTCTTAAGTTCTTTGTATCACTTAGTACAGTGAATGACGCCTTGTATCACCGGCCTTTCTTATTTGCTGATTAATTTTGTTAAATGTACTTGGTGACATGAGTACTAAGGTCAAAATGTGAACACAATTCTATTTGATGTTAGGCTTTTCCAGAAGAACTTTTCTCGATTCTTCGAACTCTGCAAATACTGAGAGGGCTTAGTGTTGGTCTGGGAATAAGTCATTCATGTGCTGAACAGTGGAGACCTATTGCTGAGGAAGCTTTGTATAATGCTGGAAGATTGACAGGTTAGTCCCTAATACGACAATGCATTTTTTTGTTCAACTAAACAAGTCAATCTATTGCCAAGCAAGAACATATCGTCTTCATTTTCATGCCACATTAATGTTATTTAGTCATTTCTTCTGTTACTGACTGAAATGGAGTATGTAGTGATACACAGATGAGTATTCGAATACTATAATCACTACAGTTACTAGGCCCATTCTTGTTTGATGATTCATTAGGATCTATACAGCTCTAACAATGAGCCATAGCCATTATACATCTTATTCATTTCCTGGTTTAAGATCTAACAATGATATGCAATTGTTACTTTTTTGTTTCAGATATAGATATGAAGCGATCACATAGACATAGAACCAGAAGAAAGTCCGGAAAATAACATCTAGCGAGTCAAGAGGAGCAAAGTATGAACGAAATCGGAGATGGTCATATTGCTAAATTTTTGGAGAAAGAGCAATGGTTTGCTTTTGTAGCAAAGCTTTTCAAGGACAAGTGACCACAAAAACACTACATTGCTTTGTA----TTTTTTTCTCTTCCTGTGGCCTTGCAACAATTTCTGTACAACATGGCCTGTAATTGAATTGATAATTGGCAAAACAGGTAAAAAGAGATGCATTTTGATC</genome_strand>
        <mrna_strand>CGTCCAACCGTCGTGAAAATGACTCTGGATCATTCTGAATTTCAGTCTCTTAAAAATTTGTGAAAATTCAGCTCAATTAGGTCCCATATAATCTGGATTTTAGCTTCTGTGACTTAAAAGTGGTCTGTTTTGTTCTCTTGCATTATGCTCCACAAATGATAAGGTGGATCTTGTACCTTCTTAAGTTCTTTGCATCACTTAGTACAGTGAATGACGCCTTGTATCACCGGCCTTTCTTATTTGCTGATTAATTTTGTTAAATGTACTTGGTGACATGAGTACTAAGGTCAAAATGTGAACACAATTCTATTTGATGTTAGGCTTTTCCAGAAGAACTTTTCTCGATTCTTCGAACTCTGCAAATACTGAGAGGGCTTAGTGTTGGTCTGGGAATAAGTCATTCATGTGCTGAACAGTGGAGACCTATTGCTGAGGAAGCTTTGTACAATGCTGGAAGATTGACAG.................................................................................................................................................................................................................................................................................................................................ATATAGATATGAAGCGATCACACAGACATAGAACCAGAAGAAAGTCCGGAAAATAACATCTAACGAGTCAAGAGAAGCAAAGTATGAACGAAATCGGAGATAGTCATGTTGCTAAATTTTTGGAGAAAGAGCAATGGTTTGCTTTTGTGGCAAAGCTTTTCAAGGACGAGTGACCACAAAAACACTACA-TGCTTTGTATTTTTTTTTTTCTCTTCCTGTGGCCTTGCAACAATTTCTGTACAACATGGCCTGTAATTGAATTGATAATTGGCAAAACAGGTAAAGAGAGATGCATTTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E227380" ref_strand="+" ref_description="SGN-E227380 [cLEL-30-C14](-)">
      <seq>cttttccagaagaacttttctcgattcttcgaactctgcaaatactaaaagggcttagtgttggtctgggaataagtcattcatgtgctgaacagtgaagacctattgctgaggaagctttgtataatgctggaagattgacagatatagatatgaagcgatcacatagtcatagaaccagaagaaagtccggaaaataacatctagcgagtcaagaggagcaaagtatgaacgaaatcggagatggtcatattgctaaatttttggagaaagagcaatggtttgcttttgtagcaaagcttttcaaggacaagtgaccacaaaaacactacaatgctttgtatttttttctcttcctgtggccttgcaacaatttctgtacaacatggcctgtaattgaattgataattggcaaaacccccaaaaagagatgcattttgatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="22878" stop="21514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22578" g_stop="22435" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22434" i_stop="22114" i_length="321">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22113" g_stop="21815" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="443" r_length="299" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="444" polyA_stop="460"/>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E227380" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22578" e_stop="22435"/>
          <exon e_start="22113" e_stop="21815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCCAGAAGAACTTTTCTCGATTCTTCGAACTCTGCAAATACTGAGAGGGCTTAGTGTTGGTCTGGGAATAAGTCATTCATGTGCTGAACAGTGGAGACCTATTGCTGAGGAAGCTTTGTATAATGCTGGAAGATTGACAGGTTAGTCCCTAATACGACAATGCATTTTTTTGTTCAACTAAACAAGTCAATCTATTGCCAAGCAAGAACATATCGTCTTCATTTTCATGCCACATTAATGTTATTTAGTCATTTCTTCTGTTACTGACTGAAATGGAGTATGTAGTGATACACAGATGAGTATTCGAATACTATAATCACTACAGTTACTAGGCCCATTCTTGTTTGATGATTCATTAGGATCTATACAGCTCTAACAATGAGCCATAGCCATTATACATCTTATTCATTTCCTGGTTTAAGATCTAACAATGATATGCAATTGTTACTTTTTTGTTTCAGATATAGATATGAAGCGATCACATAGACATAGAACCAGAAGAAAGTCCGGAAAATAACATCTAGCGAGTCAAGAGGAGCAAAGTATGAACGAAATCGGAGATGGTCATATTGCTAAATTTTTGGAGAAAGAGCAATGGTTTGCTTTTGTAGCAAAGCTTTTCAAGGACAAGTGACCACAAAAACACTACATTGCTTTGTATTTTTTTCTCTTCCTGTGGCCTTGCAACAATTTCTGTACAACATGGCCTGTAATTGAATTGATAATTGGCAAAACAGGTAAAAAGAGATGCATTTTGATC</genome_strand>
        <mrna_strand>CTTTTCCAGAAGAACTTTTCTCGATTCTTCGAACTCTGCAAATACTAAAAGGGCTTAGTGTTGGTCTGGGAATAAGTCATTCATGTGCTGAACAGTGAAGACCTATTGCTGAGGAAGCTTTGTATAATGCTGGAAGATTGACAG.................................................................................................................................................................................................................................................................................................................................ATATAGATATGAAGCGATCACATAGTCATAGAACCAGAAGAAAGTCCGGAAAATAACATCTAGCGAGTCAAGAGGAGCAAAGTATGAACGAAATCGGAGATGGTCATATTGCTAAATTTTTGGAGAAAGAGCAATGGTTTGCTTTTGTAGCAAAGCTTTTCAAGGACAAGTGACCACAAAAACACTACAATGCTTTGTATTTTTTTCTCTTCCTGTGGCCTTGCAACAATTTCTGTACAACATGGCCTGTAATTGAATTGATAATTGGCAAAACCCCCAAAAAGAGATGCATTTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E408336" ref_strand="+" ref_description="SGN-E408336 [PPI-10-F24]">
      <seq>gatgaaatggcaaagagaggaatcagtccagaaggtaaaattgcagcagtagcaaggcagaacattcttaaaagtttgtccctaagcttatggacaaatgacactcaggagtggtttctttcatgcagaacctcatccagggaatattctaatctgcaaaggtgcctgaggcaagttgcattgctggactatggacaagttaaggatcttcccgaaaatctcaggctaggatatgctaatcttattcttgctattgctgatggcgatgctactagggccagagaaagctttaaggagcttggcatagacaccctaagcaaatgtgaggatgagcagaaagaaatgcttaaattggcacgagggatgtttgacacaaaattaccacctggtgtaaagatgctgcaacctttctcggaagaatcttcagtcaaaaaaattgcagttgaggcttttccagaagaacttttctctattcttcgaactctgcaaatactgagaagggcttagtgttggtttgggaataagtcattcatgtgctgaacagtggagacctattgctgaggaagctttgtacaatgctggcagattgacagatatagataagaagcgatcgcgtagacatagatcttgaagaaagtcctgaaaataacagctagctagtcaagaggagcaaagtatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="29589" stop="21727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29289" g_stop="29231" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29230" i_stop="25053" i_length="4178">
            <donor d_prob="0.971" d_score="0.94"/>
            <acceptor a_prob="0.934" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25052" g_stop="24940" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="174" r_length="115" r_score="0.920"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24939" i_stop="24841" i_length="99">
            <donor d_prob="0.986" d_score="0.90"/>
            <acceptor a_prob="0.706" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24840" g_stop="24722" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="293" r_length="119" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24721" i_stop="24371" i_length="351">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.894" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24370" g_stop="24217" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="447" r_length="154" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24216" i_stop="22580" i_length="1637">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.300" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22579" g_stop="22435" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="593" r_length="146" r_score="0.959"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22434" i_stop="22114" i_length="321">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22113" g_stop="22027" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="680" r_length="87" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E408336" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29289" e_stop="29231"/>
          <exon e_start="25052" e_stop="24940"/>
          <exon e_start="24840" e_stop="24722"/>
          <exon e_start="24370" e_stop="24217"/>
          <exon e_start="22579" e_stop="22435"/>
          <exon e_start="22113" e_stop="22027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAATGGCAAAGAGAGGCATCAGTCCAGATGGTAAAATTGCAGCGGTAGCAAGGCAGTAAGAACCTATATTTCTCAGAGTGAATTTGGCTTCTAAAATAATTTAGGTTACTGTCTCTGGTATATATATTATCTCTGTTAAATTAAACTGATAACATTGGCGATAGTGGAAGCAATATTTAACTTATGAATATTTATGCAAATAAAGATATGCGTTGAGTGAAACTAACACAATAATGTATGTAGAACCCGAAAACCTTGTTAAACACTTGAAAACACCAGATTAATTCAGGAAATCTGGCCTAAATTTTAGTTAAACCCCACAATCTCATGTATTGAAATGAATTACCTTGTGAAAATCAGGAGTTCTTCAAATAACAAAGGAAAATATATTCCTCTCTCAGTAATCTGAAAATGATCATCAAAGCACACTGAAGAATCCCTTTAGGGTGGCTATGAATCTGTATATTTGGGATCATTATAAAAGTATCAAGATTGTCTAGGATTGACACAGATTTTTGCTAGGTTGGCAGCAAAATTTCCTCATTTTGTGGCAGAGTGGCGCCAAGTTCAGCATTATTTTTTCTGCGTCGTGGTTAATGCAGATTTGCGCCAAGCACTGCACCTTGGCTCTAACTTTGGCTCCAGATCATCTTCCTACTTGGTCACAAGCACATTAAAAGTCTACAAGGCATCTCCAAGCCTTTTTAGCTCATTTTCCACACGCTCTTAACACAAAAAAACTGGTTTCCAAATTATTCCTAAGTTAAGTGGTGATTACGTCACAGTTCACACTTATCTCATGAAAGATTCCATTTTACCCCTGTACTGACTTGTTTGAGATGAGATTCTTTGACATCTTCCTTCTAAACCAGAAGAAGTTTTGACGATGACTCACCACATACCTTTTGAAGAAAATAAAGTATATTAGCAAATGCTACATAGCTTGAGATGTTGGTTGTATAAAAACGTTCCAGCACACAAACTTGCTTGACCTTTCGAAATTCTCTGCCTTTTGCCATGTAAACTGAAGGAGTTGGTTTTGTCCCTGTGGGGTCAAATCAATGGATGAAAATTCCATGTGCCAATTTACTTGGCTATAAATTGACAAGATTCAAGATGAATTAATGTGAAGATTTTGTATGAAGATAATTCTTCATTGGTACAAAATAAAAGGTCAAGATAGTAATTTTGTAGGTGAAATTTAGGTAAACCATAAAATGGTTACACATAGTAAACCTTGACATTTTGACACATAGTGATGTCATGGATGACATCAATAAAAAGAATTAATTTCTATAAATAGGAAGCTCTTAATTCATTTGTAAGACGCCTTTGACTTGTCTTTTCATCTTCCAAGACATTTGATGTTGTTTCTCTCTTGTAATATTTCACTTGTATTCTTTTTAAGTGAAACAAATACTGGTGCAGTTGTTATCCGGTGGACGTAGGATCATTCTGATCCGAACCACGTTAAATATTGTTATGCTTCCTTGTTTTTTATTTTCACATTTCCGCTAACAATTTGCATCAGAGCCAAGGATCTATTTGTGTATACTCTGTGCTTTCAACACAATTTGAACTTCCACATCAAAAAAGAATTACTTTGTTTTTCTGTATTTTCAAATACTTCGTAGTAGAAGAAGAACAAGTAACAATGAGTTCCATGAAGTTTGAAATTTATAGATTTAATGGGCGCAACTACTTCAATATTTGGATGATCCAGATGATGACGTTACTGCGGAGGAAAGGTTCAATCCATGCTATTGACGAAAAGTACCCCAATAATACATCGAATCTCGACAAGAAAAAGATTGAAGGAGATGCATCAAGTGTAATCCAACTGTCCCTTTCACCTAATGTGCTCTGTGAAGTGAGCACAAGTACTAAGGAGACGGTTTAACAGTTGTGGGAAAGGCTGAAAGGGCAACCGTTTGGTGACAACAAGGATGTTGCTATAATGGTGTCTTCACACATTTAAGATGGAGTTAGGTACTTTGTTGCAGGACCATCTCGACGCGTTCAATAAACTTGTGATGGACTTAAAGACTGCTGGAATTTAAAAAGGAAGAGGAGACGCTTGCATATGCTTTGCTATTTTCATTGACTTCAAAATATCGTGATTTGAAAATTCATTTCCTATCACTCTTTGAGCAATTGCGACAAGTACTTAACTCTTGGGGCGGTTACAAGAAGAGGCATTTTGAACGAGATTGTCTTATGTCAAAGTCCAAAGAAAAGGCGAGTGCATCTACTATTGAGCGGCTACATGATTCCGATGATGATTATGTACTAAGAATATTATCCAATAGTGGAGTCTATGACAATAGATGTATGTTAGATTCTGGTTGTACTCTGCATATGATATTCCGAAGAGATTGGTCCAGCGACTATGAAACAAATGGAGGAACCATAACAATGGGCAATAGTGTAACTTGTAAAAGAATTGACATTGGTTCAATTTGGGTTTGCTGCCTTGATGGAATCATGAGGACTATTATAAAAGTCTGTCATGTTCTTGATCTGAAGAACCTCGGGTGCTTTGGATGAACAAGGCTACAAGTACATGAGCAAAGGGAACTCTGAAAGTGACTAAAGGGTCTTTAGTCATGTTGAAGGCCAAGTTGGAGGATGACCTCTACACAATAGAAGAAAGCACCCTTGTGCAGTTATCTTATGATGTTAAAGAAAATTTATGGCTCATGAGACTAGGTCATGTAAGTGTACAAGGACTGGAGATATTGAGCAACTACAACCTTTTGAATGGTGAGAAGATCAACACACTTGAATTTTGTGGGCTCTGCGTCTTAAGGAAGCAGATGTAGGTCAACAACCCTATAAATCTGAATAGATGTAGTCTAGCACCCCTCCCATCTTGTGCTTGCTAGTGTTGGCCACAAATAGCCCACTAGCTTTGTCACATTTGTCTCCTTCAAAATGTCTCCGCACATCACAAGAATTAAGTGGTTACCGCACTTGCTCAAGAGTGATAGGCTCCTTGCTATACATCATTGAATTCTCAATATCATGATATTTGGAAGTCTATGAAAATAGAAAAGAACATGCATGTGTCTCCTCATCCTTGTTAATTTCAGCAGTCTGAAAGTCTATCACAAGTTTATTGAACGAATCTATTTGAACCTGCAAAAAAGTACCTAAATCCATCTTAAATGTGTGAAGACACCGTTGTAACAACATCCTTGTTGTCATTGACCCATCTTGGTAAAGGCCTTCCAACCTTTCTCATAATTATTTGACGGTCTCCTCGGTACTTATCCTCACTTCACAAAGCAATTTAGGTGCAAGGGATAGTTGAATTACACTCAATGCATCTTCTTCTTGTTGGAATTCGATGTGTTATCGGGGTACTTACCGTCAATAGCAGTGATTGAACCTTTCCTCCTAATAACGCCATCATCTGGATCTTCTAGATGTTGAAGTTGTTGCATCTCACTAAATCTATCAATTTCAAACTTTATGGAACTCACCTTACTTGTTCGTCCTCTTCTAATACAAAGTATTTGGAAATACAGAAAACCAAAGTAAAGAAATGTGGGAGTTCATATTATGTTGCAACCCCTTGGCTCTGATACCAATTATTAACGAAAACGTAAAAATAAAGAACAAGGAAGAACAACTATATTTAACGTGGTTCGGATCAGAATGATCCTATATCCACTGGAGAACAACTGGAGAACAACTGTACTTATATTTATTTCACTCCAAAACATTACAAGTGAAATATCACAAGAGAGTAAGAAGATAAAGTGCCGTAGAAGATGAGAAGGCAAGTGAGAGTTGTCTTACAACTGAATTAAGAGCTACTTATTTATAGGAATGAATTCTTCTTATTGATGTCATCCATGACATCAGAACGTGTCAAAATGTCAAGGTTTAATATGTGGAACCAATTTATGGGTTACTTAAATGTCACCTACCAAGTTACTATCTTGAACTTTTATTTTGTACTAATAAAAAATTATTTTTTAACAGTACTTCACATTAATTCATCTTGAATCTTGTCAATTCCTAGTAAATTAAATTGACACATGGAATTTTCTTCCATTGGGTTTGACCCCACAAGGACCAACCAACTCTTTCAATCTCCACTGTTATCTACTATTTATAAAGTTAGTAGTTTCTAATTGTTCGAAGGATCATTTCAACCTGATTCTGTTTCATTGAGAATATGGTAAACTGGGGTACTATTCTCTTATTTGTTACTTCTACATGCAGGAACATACTTAAAAGTTTGTCCCT-AGCTTATGGACAAATGATACTCAGGAGTGGTTTCTTTCATGCAGATCCTCATCCAGGGAATATTCTAATCTGCAAAGGTG-CTGAGGTTAGTATGCATCTTTTCGTTTTCTTCTTTCAATTAGGTTATCACATATAATTGTTCTTGTTTAGCTTTCTGACAAGGATCGCGGCATTCTTCTCTTATTAAGGTTGCATTGCTGGACTATGGACAAGTTAAGGATCTTCCAGAAAATCTCAGGCTTGGATATGCTAAACTTATTCTTGCTATTGCTGATGGCAATGCTACTACGGCCAAAGAAAGCTTTAAGTGAGAAACTTTTCAATGAATCTCTTGTTATAATTTCAAGAATAGTTTTCTTCCTGACGAAGCAACATGATGCAAAATACTAATGGGAGATCTCAAAAGCTTGAAATCACAAATGTTCTTCCAAAAAATAAACAGAAAAGGAAGTAGTAGTAGTTTACGTATTAGTTATTCAAGTGTGAAGAATGGAAACTGGAGTTGACTTTTTGGAGCGAAACCAACTACTCTTGGCACTAATAACAGAGATGGAAATGATTTTTTTAACTCTATTACGGAGTTAATGTTATTGCAATAATTACATTCTTTTAGTACTGATATGTTTCCAATCTTTGAACTTCTCACTTTGAATTAAAGGGAGCTTGGCATAGATACCCTAAGCAAATGTGAGGATGAGCAGAAAGAAATGCTTAAATTGGCACAAGGGATGTTTGACACAAAATTACCACCTGGTGTAAAGATGATGCAACCTTTCTCAGAAGAATCTTCAGTCAAAAAAATTGCAGTTGAGGTATGCGGTACCTGCTCTCTCAACTTATGGTATTTACCAGTTCCCAATGTTAATCATTTTAGAAAGGGTTGCATTTACCATTCAAGAATCTAAGGATCTTTTCCACATGATACTACCTTCCCCATTGAGGTCTATCAGTTTGATTAGTGATGGATATTGAAGACAAGAGTTGACGCAGTTGTATTTTGATAACCCTGACTAAAGAATTTGAAATTTTATCAGTCGTCATGTCTTTGTTGATGCTTTGGTAATAAGGAACTATAGAATTAGTGAAGAGAGTACAGAGAAGAGTTTATCTTTTATGAAAGTGATCATAATTTTGGGACACTGCAAAAGGAGTTTCTTTCCATTTAAAGTTAATAACTTGCTTAGGATGGCATTGGGAGGATGAATTGATTTGAGAAGTAAATCTTTAGCAGAACAATATTCATTGCTGAACTCTATCTATACATAATTACCTCAAATTCCTATTTATTTGGAGCTTCGACTCAAAAGCATGGACATCTCAGAAAAAAATTACGTGGGGTCAAACAATCTTCTGATGGGAAGTTATAATAAATTCTATGCATTTTGTTATAAGGACATATATATTGAAAAAATGAGCTGTTTGGTTCAAGTATTGGTTGGAGGATATTGTGATCAATAGAGATAGAAGGCCACATAGTTTGTGGTCATGCAAATAAACTTAGCAGACTGCCGATCTATAGCCACAATAGACTGATCTGTATCCCTGGGCTATGTTGCTCGGACTCTTAAAAAATTATATCAGGTGCATGTCGGATCCTCCAACAATAGTGTATTTTAGAGGATCTTACACGGGTGCGGCAACATTTTTGAAGAGTCCGAACAACATAGTCCCTACGTCTTTCAGCCAACTAAATCAATATAGTGACTACTTTCACATTTTGCACCTGTGCTTAAAATGCAACTACACAAATCATTATACTAGACGAATTCTTATAAGCTTCTAGAACAAATTCTGCGGAAAGGAAACTAAAATATTGAAATTGAAGCCATGGCCATTTGACAAGTACTTACAAGTACCATGATTAAGCTTACACTTTGATTACTATACATACACTAGACATGCTACTAATCTGGTATTCCTCAATCTTTATGATAATGGAGAAATGTTTAGCCAAGAATCATGAAAGAGAGGAACTTTTTGACATCGTTCAGCAAAGGCTGAGTAAGTTTTTATTGTTTCCATTAGAAATGTTGTCTCTTAAATGATTGTGGTGCTCTATAAAAAAGAAAAGAGAAAGGCCACATCATGTCGAAATTGGAAGTCTTTCACTTAAGATGCAAATGCAATAATGTCCAACCGTCATGAAAATGACTCTGGATCATTCTGAATTTCAGTCTCTTAAAAATTTGTGAAAATTCAGCTCAATTAGGTCCCATATAATCTGGATTTTAGCTTCTGTGACTTAAAAGTGGTCTGTTTTGTTCTCTTGCATTATGCTCCGCAAATGATAAGGTGGATCTTGTACCTTCTTAAGTTCTTTGTATCACTTAGTACAGTGAATGACGCCTTGTATCACCGGCCTTTCTTATTTGCTGATTAATTTTGTTAAATGTACTTGGTGACATGAGTACTAAGGTCAAAATGTGAACACAATTCTATTTGATGTTAGGCTTTTCCAGAAGAACTTTTCTCGATTCTTCGAACTCTGCAAATACTGAG-AGGGCTTAGTGTTGGTCTGGGAATAAGTCATTCATGTGCTGAACAGTGGAGACCTATTGCTGAGGAAGCTTTGTATAATGCTGGAAGATTGACAGGTTAGTCCCTAATACGACAATGCATTTTTTTGTTCAACTAAACAAGTCAATCTATTGCCAAGCAAGAACATATCGTCTTCATTTTCATGCCACATTAATGTTATTTAGTCATTTCTTCTGTTACTGACTGAAATGGAGTATGTAGTGATACACAGATGAGTATTCGAATACTATAATCACTACAGTTACTAGGCCCATTCTTGTTTGATGATTCATTAGGATCTATACAGCTCTAACAATGAGCCATAGCCATTATACATCTTATTCATTTCCTGGTTTAAGATCTAACAATGATATGCAATTGTTACTTTTTTGTTTCAGATATAGATATGAAGCGATCACATAGACATAGAACCAGAAGAAAGTCCGGAAAATAACATCTAGCGAGTCAAGAGGAGCAAAGTATGA</genome_strand>
        <mrna_strand>GATGAAATGGCAAAGAGAGGAATCAGTCCAGAAGGTAAAATTGCAGCAGTAGCAAGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACATTCTTAAAAGTTTGTCCCTAAGCTTATGGACAAATGACACTCAGGAGTGGTTTCTTTCATGCAGAACCTCATCCAGGGAATATTCTAATCTGCAAAGGTGCCTGAGGCAA...................................................................................................GTTGCATTGCTGGACTATGGACAAGTTAAGGATCTTCCCGAAAATCTCAGGCTAGGATATGCTAATCTTATTCTTGCTATTGCTGATGGCGATGCTACTAGGGCCAGAGAAAGCTTTAA...............................................................................................................................................................................................................................................................................................................................................................GGAGCTTGGCATAGACACCCTAAGCAAATGTGAGGATGAGCAGAAAGAAATGCTTAAATTGGCACGAGGGATGTTTGACACAAAATTACCACCTGGTGTAAAGATGCTGCAACCTTTCTCGGAAGAATCTTCAGTCAAAAAAATTGCAGTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTCCAGAAGAACTTTTCTCTATTCTTCGAACTCTGCAAATACTGAGAAGGGCTTAGTGTTGGTTTGGGAATAAGTCATTCATGTGCTGAACAGTGGAGACCTATTGCTGAGGAAGCTTTGTACAATGCTGGCAGATTGACAG.................................................................................................................................................................................................................................................................................................................................ATATAGATAAGAAGCGATCGCGTAGACATAGATCTTGAAGAAAGTCCTGAAAATAACAGCTAGCTAGTCAAGAGGAGCAAAGTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E421686" ref_strand="+" ref_description="SGN-E421686 [STM-33-C24]">
      <seq>gatgaaatggcaaagagaggaatcagtccagatggtaaaattgcagcagtagcaaggcagaacattcttaaaagtttgtccctagcttatggacaaatgatactcaggagtggtttctttcatgcagatcctcatccagggaatattctaatctgcaaaggtgctgaggcaagttgcattgctggactatggacaagttaaggatcttcccgaaaatctcaggctaggatatgctaatcttattcttgctattgctgatggcgatgctactagggccagagaaagctttaaggagcttggcatagacaccctaagcaaatgtgaggatgagcagaaagaaatgcttaaattggcacgagggatgtttgacacaaaattaccacctggtgtaaagatgctgcaacctttctcggaagaatcttcagtcaaaaaaattgcagttgaggcttttccagaagaacttttctctattcttcgaactctgcaaatactgagagggcttantgttggtttgggaataagtcattcatgtgctgaacagtggagacctattgctgagggagctttgtacaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="29589" stop="22148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29289" g_stop="29231" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29230" i_stop="25053" i_length="4178">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25052" g_stop="24940" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="172" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24939" i_stop="24841" i_length="99">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.706" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24840" g_stop="24722" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="291" r_length="119" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24721" i_stop="24371" i_length="351">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.894" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24370" g_stop="24217" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="445" r_length="154" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24216" i_stop="22580" i_length="1637">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.300" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22579" g_stop="22448" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="577" r_length="132" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E421686" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29289" e_stop="29231"/>
          <exon e_start="25052" e_stop="24940"/>
          <exon e_start="24840" e_stop="24722"/>
          <exon e_start="24370" e_stop="24217"/>
          <exon e_start="22579" e_stop="22448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAATGGCAAAGAGAGGCATCAGTCCAGATGGTAAAATTGCAGCGGTAGCAAGGCAGTAAGAACCTATATTTCTCAGAGTGAATTTGGCTTCTAAAATAATTTAGGTTACTGTCTCTGGTATATATATTATCTCTGTTAAATTAAACTGATAACATTGGCGATAGTGGAAGCAATATTTAACTTATGAATATTTATGCAAATAAAGATATGCGTTGAGTGAAACTAACACAATAATGTATGTAGAACCCGAAAACCTTGTTAAACACTTGAAAACACCAGATTAATTCAGGAAATCTGGCCTAAATTTTAGTTAAACCCCACAATCTCATGTATTGAAATGAATTACCTTGTGAAAATCAGGAGTTCTTCAAATAACAAAGGAAAATATATTCCTCTCTCAGTAATCTGAAAATGATCATCAAAGCACACTGAAGAATCCCTTTAGGGTGGCTATGAATCTGTATATTTGGGATCATTATAAAAGTATCAAGATTGTCTAGGATTGACACAGATTTTTGCTAGGTTGGCAGCAAAATTTCCTCATTTTGTGGCAGAGTGGCGCCAAGTTCAGCATTATTTTTTCTGCGTCGTGGTTAATGCAGATTTGCGCCAAGCACTGCACCTTGGCTCTAACTTTGGCTCCAGATCATCTTCCTACTTGGTCACAAGCACATTAAAAGTCTACAAGGCATCTCCAAGCCTTTTTAGCTCATTTTCCACACGCTCTTAACACAAAAAAACTGGTTTCCAAATTATTCCTAAGTTAAGTGGTGATTACGTCACAGTTCACACTTATCTCATGAAAGATTCCATTTTACCCCTGTACTGACTTGTTTGAGATGAGATTCTTTGACATCTTCCTTCTAAACCAGAAGAAGTTTTGACGATGACTCACCACATACCTTTTGAAGAAAATAAAGTATATTAGCAAATGCTACATAGCTTGAGATGTTGGTTGTATAAAAACGTTCCAGCACACAAACTTGCTTGACCTTTCGAAATTCTCTGCCTTTTGCCATGTAAACTGAAGGAGTTGGTTTTGTCCCTGTGGGGTCAAATCAATGGATGAAAATTCCATGTGCCAATTTACTTGGCTATAAATTGACAAGATTCAAGATGAATTAATGTGAAGATTTTGTATGAAGATAATTCTTCATTGGTACAAAATAAAAGGTCAAGATAGTAATTTTGTAGGTGAAATTTAGGTAAACCATAAAATGGTTACACATAGTAAACCTTGACATTTTGACACATAGTGATGTCATGGATGACATCAATAAAAAGAATTAATTTCTATAAATAGGAAGCTCTTAATTCATTTGTAAGACGCCTTTGACTTGTCTTTTCATCTTCCAAGACATTTGATGTTGTTTCTCTCTTGTAATATTTCACTTGTATTCTTTTTAAGTGAAACAAATACTGGTGCAGTTGTTATCCGGTGGACGTAGGATCATTCTGATCCGAACCACGTTAAATATTGTTATGCTTCCTTGTTTTTTATTTTCACATTTCCGCTAACAATTTGCATCAGAGCCAAGGATCTATTTGTGTATACTCTGTGCTTTCAACACAATTTGAACTTCCACATCAAAAAAGAATTACTTTGTTTTTCTGTATTTTCAAATACTTCGTAGTAGAAGAAGAACAAGTAACAATGAGTTCCATGAAGTTTGAAATTTATAGATTTAATGGGCGCAACTACTTCAATATTTGGATGATCCAGATGATGACGTTACTGCGGAGGAAAGGTTCAATCCATGCTATTGACGAAAAGTACCCCAATAATACATCGAATCTCGACAAGAAAAAGATTGAAGGAGATGCATCAAGTGTAATCCAACTGTCCCTTTCACCTAATGTGCTCTGTGAAGTGAGCACAAGTACTAAGGAGACGGTTTAACAGTTGTGGGAAAGGCTGAAAGGGCAACCGTTTGGTGACAACAAGGATGTTGCTATAATGGTGTCTTCACACATTTAAGATGGAGTTAGGTACTTTGTTGCAGGACCATCTCGACGCGTTCAATAAACTTGTGATGGACTTAAAGACTGCTGGAATTTAAAAAGGAAGAGGAGACGCTTGCATATGCTTTGCTATTTTCATTGACTTCAAAATATCGTGATTTGAAAATTCATTTCCTATCACTCTTTGAGCAATTGCGACAAGTACTTAACTCTTGGGGCGGTTACAAGAAGAGGCATTTTGAACGAGATTGTCTTATGTCAAAGTCCAAAGAAAAGGCGAGTGCATCTACTATTGAGCGGCTACATGATTCCGATGATGATTATGTACTAAGAATATTATCCAATAGTGGAGTCTATGACAATAGATGTATGTTAGATTCTGGTTGTACTCTGCATATGATATTCCGAAGAGATTGGTCCAGCGACTATGAAACAAATGGAGGAACCATAACAATGGGCAATAGTGTAACTTGTAAAAGAATTGACATTGGTTCAATTTGGGTTTGCTGCCTTGATGGAATCATGAGGACTATTATAAAAGTCTGTCATGTTCTTGATCTGAAGAACCTCGGGTGCTTTGGATGAACAAGGCTACAAGTACATGAGCAAAGGGAACTCTGAAAGTGACTAAAGGGTCTTTAGTCATGTTGAAGGCCAAGTTGGAGGATGACCTCTACACAATAGAAGAAAGCACCCTTGTGCAGTTATCTTATGATGTTAAAGAAAATTTATGGCTCATGAGACTAGGTCATGTAAGTGTACAAGGACTGGAGATATTGAGCAACTACAACCTTTTGAATGGTGAGAAGATCAACACACTTGAATTTTGTGGGCTCTGCGTCTTAAGGAAGCAGATGTAGGTCAACAACCCTATAAATCTGAATAGATGTAGTCTAGCACCCCTCCCATCTTGTGCTTGCTAGTGTTGGCCACAAATAGCCCACTAGCTTTGTCACATTTGTCTCCTTCAAAATGTCTCCGCACATCACAAGAATTAAGTGGTTACCGCACTTGCTCAAGAGTGATAGGCTCCTTGCTATACATCATTGAATTCTCAATATCATGATATTTGGAAGTCTATGAAAATAGAAAAGAACATGCATGTGTCTCCTCATCCTTGTTAATTTCAGCAGTCTGAAAGTCTATCACAAGTTTATTGAACGAATCTATTTGAACCTGCAAAAAAGTACCTAAATCCATCTTAAATGTGTGAAGACACCGTTGTAACAACATCCTTGTTGTCATTGACCCATCTTGGTAAAGGCCTTCCAACCTTTCTCATAATTATTTGACGGTCTCCTCGGTACTTATCCTCACTTCACAAAGCAATTTAGGTGCAAGGGATAGTTGAATTACACTCAATGCATCTTCTTCTTGTTGGAATTCGATGTGTTATCGGGGTACTTACCGTCAATAGCAGTGATTGAACCTTTCCTCCTAATAACGCCATCATCTGGATCTTCTAGATGTTGAAGTTGTTGCATCTCACTAAATCTATCAATTTCAAACTTTATGGAACTCACCTTACTTGTTCGTCCTCTTCTAATACAAAGTATTTGGAAATACAGAAAACCAAAGTAAAGAAATGTGGGAGTTCATATTATGTTGCAACCCCTTGGCTCTGATACCAATTATTAACGAAAACGTAAAAATAAAGAACAAGGAAGAACAACTATATTTAACGTGGTTCGGATCAGAATGATCCTATATCCACTGGAGAACAACTGGAGAACAACTGTACTTATATTTATTTCACTCCAAAACATTACAAGTGAAATATCACAAGAGAGTAAGAAGATAAAGTGCCGTAGAAGATGAGAAGGCAAGTGAGAGTTGTCTTACAACTGAATTAAGAGCTACTTATTTATAGGAATGAATTCTTCTTATTGATGTCATCCATGACATCAGAACGTGTCAAAATGTCAAGGTTTAATATGTGGAACCAATTTATGGGTTACTTAAATGTCACCTACCAAGTTACTATCTTGAACTTTTATTTTGTACTAATAAAAAATTATTTTTTAACAGTACTTCACATTAATTCATCTTGAATCTTGTCAATTCCTAGTAAATTAAATTGACACATGGAATTTTCTTCCATTGGGTTTGACCCCACAAGGACCAACCAACTCTTTCAATCTCCACTGTTATCTACTATTTATAAAGTTAGTAGTTTCTAATTGTTCGAAGGATCATTTCAACCTGATTCTGTTTCATTGAGAATATGGTAAACTGGGGTACTATTCTCTTATTTGTTACTTCTACATGCAGGAACATACTTAAAAGTTTGTCCCTAGCTTATGGACAAATGATACTCAGGAGTGGTTTCTTTCATGCAGATCCTCATCCAGGGAATATTCTAATCTGCAAAGGTGCTGAGGTTAGTATGCATCTTTTCGTTTTCTTCTTTCAATTAGGTTATCACATATAATTGTTCTTGTTTAGCTTTCTGACAAGGATCGCGGCATTCTTCTCTTATTAAGGTTGCATTGCTGGACTATGGACAAGTTAAGGATCTTCCAGAAAATCTCAGGCTTGGATATGCTAAACTTATTCTTGCTATTGCTGATGGCAATGCTACTACGGCCAAAGAAAGCTTTAAGTGAGAAACTTTTCAATGAATCTCTTGTTATAATTTCAAGAATAGTTTTCTTCCTGACGAAGCAACATGATGCAAAATACTAATGGGAGATCTCAAAAGCTTGAAATCACAAATGTTCTTCCAAAAAATAAACAGAAAAGGAAGTAGTAGTAGTTTACGTATTAGTTATTCAAGTGTGAAGAATGGAAACTGGAGTTGACTTTTTGGAGCGAAACCAACTACTCTTGGCACTAATAACAGAGATGGAAATGATTTTTTTAACTCTATTACGGAGTTAATGTTATTGCAATAATTACATTCTTTTAGTACTGATATGTTTCCAATCTTTGAACTTCTCACTTTGAATTAAAGGGAGCTTGGCATAGATACCCTAAGCAAATGTGAGGATGAGCAGAAAGAAATGCTTAAATTGGCACAAGGGATGTTTGACACAAAATTACCACCTGGTGTAAAGATGATGCAACCTTTCTCAGAAGAATCTTCAGTCAAAAAAATTGCAGTTGAGGTATGCGGTACCTGCTCTCTCAACTTATGGTATTTACCAGTTCCCAATGTTAATCATTTTAGAAAGGGTTGCATTTACCATTCAAGAATCTAAGGATCTTTTCCACATGATACTACCTTCCCCATTGAGGTCTATCAGTTTGATTAGTGATGGATATTGAAGACAAGAGTTGACGCAGTTGTATTTTGATAACCCTGACTAAAGAATTTGAAATTTTATCAGTCGTCATGTCTTTGTTGATGCTTTGGTAATAAGGAACTATAGAATTAGTGAAGAGAGTACAGAGAAGAGTTTATCTTTTATGAAAGTGATCATAATTTTGGGACACTGCAAAAGGAGTTTCTTTCCATTTAAAGTTAATAACTTGCTTAGGATGGCATTGGGAGGATGAATTGATTTGAGAAGTAAATCTTTAGCAGAACAATATTCATTGCTGAACTCTATCTATACATAATTACCTCAAATTCCTATTTATTTGGAGCTTCGACTCAAAAGCATGGACATCTCAGAAAAAAATTACGTGGGGTCAAACAATCTTCTGATGGGAAGTTATAATAAATTCTATGCATTTTGTTATAAGGACATATATATTGAAAAAATGAGCTGTTTGGTTCAAGTATTGGTTGGAGGATATTGTGATCAATAGAGATAGAAGGCCACATAGTTTGTGGTCATGCAAATAAACTTAGCAGACTGCCGATCTATAGCCACAATAGACTGATCTGTATCCCTGGGCTATGTTGCTCGGACTCTTAAAAAATTATATCAGGTGCATGTCGGATCCTCCAACAATAGTGTATTTTAGAGGATCTTACACGGGTGCGGCAACATTTTTGAAGAGTCCGAACAACATAGTCCCTACGTCTTTCAGCCAACTAAATCAATATAGTGACTACTTTCACATTTTGCACCTGTGCTTAAAATGCAACTACACAAATCATTATACTAGACGAATTCTTATAAGCTTCTAGAACAAATTCTGCGGAAAGGAAACTAAAATATTGAAATTGAAGCCATGGCCATTTGACAAGTACTTACAAGTACCATGATTAAGCTTACACTTTGATTACTATACATACACTAGACATGCTACTAATCTGGTATTCCTCAATCTTTATGATAATGGAGAAATGTTTAGCCAAGAATCATGAAAGAGAGGAACTTTTTGACATCGTTCAGCAAAGGCTGAGTAAGTTTTTATTGTTTCCATTAGAAATGTTGTCTCTTAAATGATTGTGGTGCTCTATAAAAAAGAAAAGAGAAAGGCCACATCATGTCGAAATTGGAAGTCTTTCACTTAAGATGCAAATGCAATAATGTCCAACCGTCATGAAAATGACTCTGGATCATTCTGAATTTCAGTCTCTTAAAAATTTGTGAAAATTCAGCTCAATTAGGTCCCATATAATCTGGATTTTAGCTTCTGTGACTTAAAAGTGGTCTGTTTTGTTCTCTTGCATTATGCTCCGCAAATGATAAGGTGGATCTTGTACCTTCTTAAGTTCTTTGTATCACTTAGTACAGTGAATGACGCCTTGTATCACCGGCCTTTCTTATTTGCTGATTAATTTTGTTAAATGTACTTGGTGACATGAGTACTAAGGTCAAAATGTGAACACAATTCTATTTGATGTTAGGCTTTTCCAGAAGAACTTTTCTCGATTCTTCGAACTCTGCAAATACTGAGAGGGCTTAGTGTTGGTCTGGGAATAAGTCATTCATGTGCTGAACAGTGGAGACCTATTGCTGAGGAAGCTTTGTATAATGCT</genome_strand>
        <mrna_strand>GATGAAATGGCAAAGAGAGGAATCAGTCCAGATGGTAAAATTGCAGCAGTAGCAAGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACATTCTTAAAAGTTTGTCCCTAGCTTATGGACAAATGATACTCAGGAGTGGTTTCTTTCATGCAGATCCTCATCCAGGGAATATTCTAATCTGCAAAGGTGCTGAGGCAA...................................................................................................GTTGCATTGCTGGACTATGGACAAGTTAAGGATCTTCCCGAAAATCTCAGGCTAGGATATGCTAATCTTATTCTTGCTATTGCTGATGGCGATGCTACTAGGGCCAGAGAAAGCTTTAA...............................................................................................................................................................................................................................................................................................................................................................GGAGCTTGGCATAGACACCCTAAGCAAATGTGAGGATGAGCAGAAAGAAATGCTTAAATTGGCACGAGGGATGTTTGACACAAAATTACCACCTGGTGTAAAGATGCTGCAACCTTTCTCGGAAGAATCTTCAGTCAAAAAAATTGCAGTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTCCAGAAGAACTTTTCTCTATTCTTCGAACTCTGCAAATACTGAGAGGGCTTANTGTTGGTTTGGGAATAAGTCATTCATGTGCTGAACAGTGGAGACCTATTGCTGAGGGAGCTTTGTACAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E278043" ref_strand="+" ref_description="SGN-E278043 [cLER-4-C23]">
      <seq>acaaggagggtcctagtgatggaatatatagatggaaccccgattctgaagctaggagatgaaatggcaaagagaggcatcagtccagatggtaaaattgcagcggtagcaaggcagaacatacttaaaagtttgtccctagcttatggacaaatgatactcaggagtggtttctttcatgcagatcctcatccagggaatattctaatctgcaaaggtgctgaggatgcattgctggactatggacaagttaaggatcttccagaaaatctcatgcttggatatgctaaacttattcttgctattgctgatggcaatgctactacggccaaagaaagctttaaggagcttggcatatataccctaagcaaatgtgaggatgagcagaaagaaatgcttaaattggcacaagggatgtttgacacaaaattaccacctggtgtaaagatgatgcaacctttctcagaagaatcttcagtcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="29646" stop="23930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29346" g_stop="29231" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29230" i_stop="25053" i_length="4178">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25052" g_stop="24944" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="225" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24943" i_stop="24841" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.706" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24840" g_stop="24722" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="344" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24721" i_stop="24371" i_length="351">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24370" g_stop="24230" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="485" r_length="141" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E278043" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29346" e_stop="29231"/>
          <exon e_start="25052" e_stop="24944"/>
          <exon e_start="24840" e_stop="24722"/>
          <exon e_start="24370" e_stop="24230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGAGGGTCCTAGTGATGGAATATATAGATGGAACCCCGATTCTGAAGCTAGGAGATGAAATGGCAAAGAGAGGCATCAGTCCAGATGGTAAAATTGCAGCGGTAGCAAGGCAGTAAGAACCTATATTTCTCAGAGTGAATTTGGCTTCTAAAATAATTTAGGTTACTGTCTCTGGTATATATATTATCTCTGTTAAATTAAACTGATAACATTGGCGATAGTGGAAGCAATATTTAACTTATGAATATTTATGCAAATAAAGATATGCGTTGAGTGAAACTAACACAATAATGTATGTAGAACCCGAAAACCTTGTTAAACACTTGAAAACACCAGATTAATTCAGGAAATCTGGCCTAAATTTTAGTTAAACCCCACAATCTCATGTATTGAAATGAATTACCTTGTGAAAATCAGGAGTTCTTCAAATAACAAAGGAAAATATATTCCTCTCTCAGTAATCTGAAAATGATCATCAAAGCACACTGAAGAATCCCTTTAGGGTGGCTATGAATCTGTATATTTGGGATCATTATAAAAGTATCAAGATTGTCTAGGATTGACACAGATTTTTGCTAGGTTGGCAGCAAAATTTCCTCATTTTGTGGCAGAGTGGCGCCAAGTTCAGCATTATTTTTTCTGCGTCGTGGTTAATGCAGATTTGCGCCAAGCACTGCACCTTGGCTCTAACTTTGGCTCCAGATCATCTTCCTACTTGGTCACAAGCACATTAAAAGTCTACAAGGCATCTCCAAGCCTTTTTAGCTCATTTTCCACACGCTCTTAACACAAAAAAACTGGTTTCCAAATTATTCCTAAGTTAAGTGGTGATTACGTCACAGTTCACACTTATCTCATGAAAGATTCCATTTTACCCCTGTACTGACTTGTTTGAGATGAGATTCTTTGACATCTTCCTTCTAAACCAGAAGAAGTTTTGACGATGACTCACCACATACCTTTTGAAGAAAATAAAGTATATTAGCAAATGCTACATAGCTTGAGATGTTGGTTGTATAAAAACGTTCCAGCACACAAACTTGCTTGACCTTTCGAAATTCTCTGCCTTTTGCCATGTAAACTGAAGGAGTTGGTTTTGTCCCTGTGGGGTCAAATCAATGGATGAAAATTCCATGTGCCAATTTACTTGGCTATAAATTGACAAGATTCAAGATGAATTAATGTGAAGATTTTGTATGAAGATAATTCTTCATTGGTACAAAATAAAAGGTCAAGATAGTAATTTTGTAGGTGAAATTTAGGTAAACCATAAAATGGTTACACATAGTAAACCTTGACATTTTGACACATAGTGATGTCATGGATGACATCAATAAAAAGAATTAATTTCTATAAATAGGAAGCTCTTAATTCATTTGTAAGACGCCTTTGACTTGTCTTTTCATCTTCCAAGACATTTGATGTTGTTTCTCTCTTGTAATATTTCACTTGTATTCTTTTTAAGTGAAACAAATACTGGTGCAGTTGTTATCCGGTGGACGTAGGATCATTCTGATCCGAACCACGTTAAATATTGTTATGCTTCCTTGTTTTTTATTTTCACATTTCCGCTAACAATTTGCATCAGAGCCAAGGATCTATTTGTGTATACTCTGTGCTTTCAACACAATTTGAACTTCCACATCAAAAAAGAATTACTTTGTTTTTCTGTATTTTCAAATACTTCGTAGTAGAAGAAGAACAAGTAACAATGAGTTCCATGAAGTTTGAAATTTATAGATTTAATGGGCGCAACTACTTCAATATTTGGATGATCCAGATGATGACGTTACTGCGGAGGAAAGGTTCAATCCATGCTATTGACGAAAAGTACCCCAATAATACATCGAATCTCGACAAGAAAAAGATTGAAGGAGATGCATCAAGTGTAATCCAACTGTCCCTTTCACCTAATGTGCTCTGTGAAGTGAGCACAAGTACTAAGGAGACGGTTTAACAGTTGTGGGAAAGGCTGAAAGGGCAACCGTTTGGTGACAACAAGGATGTTGCTATAATGGTGTCTTCACACATTTAAGATGGAGTTAGGTACTTTGTTGCAGGACCATCTCGACGCGTTCAATAAACTTGTGATGGACTTAAAGACTGCTGGAATTTAAAAAGGAAGAGGAGACGCTTGCATATGCTTTGCTATTTTCATTGACTTCAAAATATCGTGATTTGAAAATTCATTTCCTATCACTCTTTGAGCAATTGCGACAAGTACTTAACTCTTGGGGCGGTTACAAGAAGAGGCATTTTGAACGAGATTGTCTTATGTCAAAGTCCAAAGAAAAGGCGAGTGCATCTACTATTGAGCGGCTACATGATTCCGATGATGATTATGTACTAAGAATATTATCCAATAGTGGAGTCTATGACAATAGATGTATGTTAGATTCTGGTTGTACTCTGCATATGATATTCCGAAGAGATTGGTCCAGCGACTATGAAACAAATGGAGGAACCATAACAATGGGCAATAGTGTAACTTGTAAAAGAATTGACATTGGTTCAATTTGGGTTTGCTGCCTTGATGGAATCATGAGGACTATTATAAAAGTCTGTCATGTTCTTGATCTGAAGAACCTCGGGTGCTTTGGATGAACAAGGCTACAAGTACATGAGCAAAGGGAACTCTGAAAGTGACTAAAGGGTCTTTAGTCATGTTGAAGGCCAAGTTGGAGGATGACCTCTACACAATAGAAGAAAGCACCCTTGTGCAGTTATCTTATGATGTTAAAGAAAATTTATGGCTCATGAGACTAGGTCATGTAAGTGTACAAGGACTGGAGATATTGAGCAACTACAACCTTTTGAATGGTGAGAAGATCAACACACTTGAATTTTGTGGGCTCTGCGTCTTAAGGAAGCAGATGTAGGTCAACAACCCTATAAATCTGAATAGATGTAGTCTAGCACCCCTCCCATCTTGTGCTTGCTAGTGTTGGCCACAAATAGCCCACTAGCTTTGTCACATTTGTCTCCTTCAAAATGTCTCCGCACATCACAAGAATTAAGTGGTTACCGCACTTGCTCAAGAGTGATAGGCTCCTTGCTATACATCATTGAATTCTCAATATCATGATATTTGGAAGTCTATGAAAATAGAAAAGAACATGCATGTGTCTCCTCATCCTTGTTAATTTCAGCAGTCTGAAAGTCTATCACAAGTTTATTGAACGAATCTATTTGAACCTGCAAAAAAGTACCTAAATCCATCTTAAATGTGTGAAGACACCGTTGTAACAACATCCTTGTTGTCATTGACCCATCTTGGTAAAGGCCTTCCAACCTTTCTCATAATTATTTGACGGTCTCCTCGGTACTTATCCTCACTTCACAAAGCAATTTAGGTGCAAGGGATAGTTGAATTACACTCAATGCATCTTCTTCTTGTTGGAATTCGATGTGTTATCGGGGTACTTACCGTCAATAGCAGTGATTGAACCTTTCCTCCTAATAACGCCATCATCTGGATCTTCTAGATGTTGAAGTTGTTGCATCTCACTAAATCTATCAATTTCAAACTTTATGGAACTCACCTTACTTGTTCGTCCTCTTCTAATACAAAGTATTTGGAAATACAGAAAACCAAAGTAAAGAAATGTGGGAGTTCATATTATGTTGCAACCCCTTGGCTCTGATACCAATTATTAACGAAAACGTAAAAATAAAGAACAAGGAAGAACAACTATATTTAACGTGGTTCGGATCAGAATGATCCTATATCCACTGGAGAACAACTGGAGAACAACTGTACTTATATTTATTTCACTCCAAAACATTACAAGTGAAATATCACAAGAGAGTAAGAAGATAAAGTGCCGTAGAAGATGAGAAGGCAAGTGAGAGTTGTCTTACAACTGAATTAAGAGCTACTTATTTATAGGAATGAATTCTTCTTATTGATGTCATCCATGACATCAGAACGTGTCAAAATGTCAAGGTTTAATATGTGGAACCAATTTATGGGTTACTTAAATGTCACCTACCAAGTTACTATCTTGAACTTTTATTTTGTACTAATAAAAAATTATTTTTTAACAGTACTTCACATTAATTCATCTTGAATCTTGTCAATTCCTAGTAAATTAAATTGACACATGGAATTTTCTTCCATTGGGTTTGACCCCACAAGGACCAACCAACTCTTTCAATCTCCACTGTTATCTACTATTTATAAAGTTAGTAGTTTCTAATTGTTCGAAGGATCATTTCAACCTGATTCTGTTTCATTGAGAATATGGTAAACTGGGGTACTATTCTCTTATTTGTTACTTCTACATGCAGGAACATACTTAAAAGTTTGTCCCTAGCTTATGGACAAATGATACTCAGGAGTGGTTTCTTTCATGCAGATCCTCATCCAGGGAATATTCTAATCTGCAAAGGTGCTGAGGTTAGTATGCATCTTTTCGTTTTCTTCTTTCAATTAGGTTATCACATATAATTGTTCTTGTTTAGCTTTCTGACAAGGATCGCGGCATTCTTCTCTTATTAAGGTTGCATTGCTGGACTATGGACAAGTTAAGGATCTTCCAGAAAATCTCAGGCTTGGATATGCTAAACTTATTCTTGCTATTGCTGATGGCAATGCTACTACGGCCAAAGAAAGCTTTAAGTGAGAAACTTTTCAATGAATCTCTTGTTATAATTTCAAGAATAGTTTTCTTCCTGACGAAGCAACATGATGCAAAATACTAATGGGAGATCTCAAAAGCTTGAAATCACAAATGTTCTTCCAAAAAATAAACAGAAAAGGAAGTAGTAGTAGTTTACGTATTAGTTATTCAAGTGTGAAGAATGGAAACTGGAGTTGACTTTTTGGAGCGAAACCAACTACTCTTGGCACTAATAACAGAGATGGAAATGATTTTTTTAACTCTATTACGGAGTTAATGTTATTGCAATAATTACATTCTTTTAGTACTGATATGTTTCCAATCTTTGAACTTCTCACTTTGAATTAAAGGGAGCTTGGCATAGATACCCTAAGCAAATGTGAGGATGAGCAGAAAGAAATGCTTAAATTGGCACAAGGGATGTTTGACACAAAATTACCACCTGGTGTAAAGATGATGCAACCTTTCTCAGAAGAATCTTCAGTCAAAAA</genome_strand>
        <mrna_strand>ACAAGGAGGGTCCTAGTGATGGAATATATAGATGGAACCCCGATTCTGAAGCTAGGAGATGAAATGGCAAAGAGAGGCATCAGTCCAGATGGTAAAATTGCAGCGGTAGCAAGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACATACTTAAAAGTTTGTCCCTAGCTTATGGACAAATGATACTCAGGAGTGGTTTCTTTCATGCAGATCCTCATCCAGGGAATATTCTAATCTGCAAAGGTGCTGAG.......................................................................................................GATGCATTGCTGGACTATGGACAAGTTAAGGATCTTCCAGAAAATCTCATGCTTGGATATGCTAAACTTATTCTTGCTATTGCTGATGGCAATGCTACTACGGCCAAAGAAAGCTTTAA...............................................................................................................................................................................................................................................................................................................................................................GGAGCTTGGCATATATACCCTAAGCAAATGTGAGGATGAGCAGAAAGAAATGCTTAAATTGGCACAAGGGATGTTTGACACAAAATTACCACCTGGTGTAAAGATGATGCAACCTTTCTCAGAAGAATCTTCAGTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E421091" ref_strand="+" ref_description="SGN-E421091 [STM-32-C14]">
      <seq>gtgggttcttcctaaaggttgctcaactaattgggaagccagacttggcccctgctgcatgggtgagaaggttagttactctatgtgatcaagcgcttgctacaccgtacaatgtgatcagggctgtgctggagaaggaattggatcagaatcttgatgaattgtttgaaagtttcgatgtcgatcctctcggttctgcttctattgcacaggttcatagagcaagactcaaaggtgacaaaaaagatgttgttgtcaaggtgcaacaccctggggtccaagagctgatgatgaccgatatccacaacttgcaagcttttgcactatacttgcagaagatagatataaaattcgatatatactctttgacaaaagaaattgagaaacagatcggatatgaattcaactttttgagagaggctgatgcaatgaatagaattcggtgttttctctacgaaaataacaaaaagtcccctgttatggttccacaggtgattcgagatattgttacaaggagggtcctagtgatggaatatattgatggaaccccaattctgaagctgggagatgaaatggcaaagagaggaatcagtccagatggtaaaattgcagcagtagcaaggcagaacattcttaaaaagttgtccctagcttatggaccaatgatactcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="34113" stop="24705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33813" g_stop="33797" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33796" i_stop="33029" i_length="768">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33028" g_stop="32834" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="212" r_length="195" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32833" i_stop="31628" i_length="1206">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31627" g_stop="31580" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="260" r_length="48" r_score="0.917"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31579" i_stop="31509" i_length="71">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.822" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31508" g_stop="31380" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="389" r_length="129" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31379" i_stop="29910" i_length="1470">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.829" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29909" g_stop="29785" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="514" r_length="125" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29784" i_stop="29342" i_length="443">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29341" g_stop="29231" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="625" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29230" i_stop="25053" i_length="4178">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25052" g_stop="25005" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="673" r_length="48" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E421091" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33813" e_stop="33797"/>
          <exon e_start="33028" e_stop="32834"/>
          <exon e_start="31627" e_stop="31580"/>
          <exon e_start="31508" e_stop="31380"/>
          <exon e_start="29909" e_stop="29785"/>
          <exon e_start="29341" e_stop="29231"/>
          <exon e_start="25052" e_stop="25005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGTTCTTCCTAAAGGTATACTCTGTAACCAGCTTCCCATTTTCCGTTTCCTAATATAGAATTGATTCAAATCTCAAACCATTATCGTTGACTCGTTGTTTATTACAACTTCAAGTGGAGTGTGAAGAGGGTAGGATGTAGGCAGACCTTATCCCTTCGTTTTAGGTTTGTTTCCGATAGAGCCTTAATTCAAAAGGAAGTAATCAGAAAGCGTAAAAGAAAGAAATAGAATTCATGGTAGCTACGACCCAAACAAGCTGTTAAGTGTTAATGGTCCTTTGTTGTTTATTAACTCTACAAGGAAAAAGATTTCTGCATTTAGTGTTCCCTTTTAATAAATTTAATTAAGTTTATGCAGTTATATTGGGATATGTGCACTAGTCTGTGCTGGCTGCAGCATGCACTGCTGTGCTCTATTCATCATTATGCTCATGAGATTGTTGTATTGCTTCCACGTTACAGAGTTCCCTGAGGGTTGCTTCCATATTTTAACCCCAGGGATTTGGTCTAGTGGTAAGAGGTGTGGCGGACCCGTGATGTGTGATTTAGGTGCACGTCATGGGTACCCTGTTGCAAGCAATTCCTGGTATGTAAATGGAAAGGGGTAGAGGGGAGGACTCATAATCCACTGAGTTTCGAACCATGGACCATTAGCTCTTGGGAATTTCTCTGTTATTAGATAAAAGAATGGTCAAGAGGGTTTATATTTGGGCTTCACAACTCATAATTCATCTTAAGATCTAATTATGTGGATGGTGATGGTAATATTATTATTAATATTAGGTTGCTCAACTAATTGGGAAACCGGACTTGGCCCCTGCTGCATGGGTGAGAAGGTTAGTTACTCTATGTGATCAAGCGCCTGCTACACCGTACAATGTGGTCAGGGCTGTGCTGGAGAAGGAATTAAATCAGAATGTTGATGAATTGTTTGAAAGTTTTGATTTCGATCCTCTCGGTTCTGCTTCTATTGCACAGGTAACTGTTAAGCTTGATTTAAAGCATTACTAAAGCTCATTTTAGAGCGACAAAAATTTCTTCAAGCATTGACTAGAAACTTCATGTTAATCAAACAGTTGTTAAAAATATTGACCTTGCAGATAGTAAATACATTTAGATTTGTTGAAGTGTGTGACTATCATATCTAAAAGTCTAAGTTATTACAGGGGTGACACATTTATTTAGTATGTTAGGTTGCAAATTTTTCACTCGAATTAGGACCAACTCTTTTTTCTTGGGCTTTTACCTGGAAGTTAATTTCCACTAATAGGTTGTGGAACACAGTAGGCACGTAATAGACACAACAGCACCCTAATTCCAGCAATAATAGCAAAAACATTGCCACTTACATGTTAGGCAAGGGAAACTGCCTAAGAAGATACACCAAACAAGTTTTTCAATCTTTGCTGTGGCTGATATATTATAATGTCTAACAATCTCTAGTATATTCTTAATTTTTATGGTTTATGTAGGGCCTTAGCCCTATCCCAACAACAACAGTAGCTTTTGTTTGCAATGAAGAATATATATTTCAAAAGGATTTTTTTGTATATTTTACATTTTGCATTGTATGGAAATGTGGCTCCTTTCATGAGTCCTTTTTGTTAAATGCAAAATTTGTTCATAGCTAACATGCAAGTGACGACAAGTACATCCATGATCATGACTCATGATGATGAAGATGTGAAATATACCAATAAAAAAATGAATAATGAGCCATTTTCAAATCTTTATATAGGTATAACATGCCACAAAATATATGCTAGAACTTCTTTTCAACAAGTAGACTGTGCACTGATACTTTCTTTCTTTTCCTAGTTAGCTGATTTCCTTAATCAAGTTTTGTTGTTCTTGCTCCTTCTAACAAGATGGAGGTTTATTTGATCTGAGGAAACTTTCAGCTGAAATAGTTTCTTAGGACATCGTCTAGCACTAAGCTTTGTGTATATCTGTTCACAAATGAATAAATATTCATTTTCTATTGTTCTCCTTACTTCTCAACAGCTTTAACCTTAAAACAGTGTGATACATGGCTTTGAAGGCCAAACCTGTTAGGCAGTTTAAAGTCAGATAAATAATTATTTCTAAATGTCATATCTTTGAGCTGTATTCTAGTTATACAGAGGAATTAATATTACTTTGATCCTAAGTGGTTCAACTTGTGTTTACTTTACTTGGAATTAGGTTCACAGAGCGAGACTCATAGGTGACAAAAGAGATGTTGTTGTCAAGGTAAGAAAAATTGACTCATAACTTTGCAGATTGTTGTGATCATAAGGTTCTAAAGTAGTTGTCTTCTCTAGGTACAACACCCTGGGGTCCAACAGCTGATGATGACCGATATCCACAATTTGCAAGCTTTTGCACTATACTTGCAGAAGATTGATATAAAATTCGATATATACTCTTTGACAAAGGAAATTGAGAAACAGGTGCATAAAATTTCCGTATATGCATTATTTACTCTTATCATCTATTGTTTCTCTTTAGCCAGAATAAGGTAAAATGTAATTTCATTAAATAACAGCACCAAGGAGGTGCATGTTGCAAATATTTACATCCATATTCAGTTGTTCCTAGTTTCTAAATCGGGAACTAATAAATTGTATTAAGTGACTAGGAGGGCTTTCTATTTTCCTTAATTCTTTCCTGATGATCTTCATTACCTTTTCCAATAAGAACTTGTTATTTTCTTTATTGTTTTTAGTGAAAGCCTTAAAAGTTAAAACCTGCCTTAATGAGTAAGACTCAAATTCTGGGTGTGAATTTCTGATATGTTTCCTAATTTATAGCCATGTGTCTTCTGTGAACTTCTTTGACAACCAGATGTTCGTGAATCCATATTTAGCATTAATGATGTTTTCCCTAGAAACATATTAATCTAGCACCGACCTTTCTCATGCGCGGAAGTAGTAGCCTGCATACGGGTTCGGCCGAACCCAGTAGATTGTCTCAAATAGTGTATTTGTGTTAATAAATACATTAAATAGGTCAAATATTAAATTTAGAAGTTAGAACCGAGTTATTATCACTTGAAAACGTCATTGTCAAATTCAGAACGCAAAAGATGAAATCCTAGCTTCGCCTATGTCATTCATTGCCATTCAAATAATAAGCACATATTGTGAATTTCCATATTTCACACCCATTATCCTGCTTTACTTTTGTCATAATTATTTTCTCCCCTATATGAGATGAAATTTCTTATCTGTCCACATCCATCCATAAGAAGTTAAAACGTAATCATCAATAGTTGTTTCTTCACCTTGTGTAGTATGCGGATAAAGGACATGGGTAGGTCTTCCAATACACTATCTATCAAGGTAAAAGATATTGTTTCTTCCATGTAAGCATTCTTTTCCCAAATTCATAACTTATTGCTTGCCACCCAGTAGCAGTTTTGTATTTTGCCTCCAGAGGCCAGCCAAATTAGGTGGAAGGAAATGTGGCTATGTTGCATTGCAGAATATTTGCTGACACCTGAAAATTTCCTACTTCATTCACTGGATATAAACATGATTTTTCTCTTCTAAGATAACTTACTTTATGAAAGATGGCTCTTCGTAGCCATTGTAGATTTCTGTTCATCTAAATATTGAGGAAACACTTTGGTACAGTAATTCCAAAAGCTTCATGCAATGTAAGTCTTCTTTATAGGTAGTTTCAATTAGCTGGATGGTGCATTATGATCTGTATTGATGGTATGATTGCGAATTATTTTGATGATATCTGTTGTTTCTCACAAATGTTCTTAAAGACAACTCATCTCAGTTGTTTGCTCATGGCTTTACATGCAACTTGGTATTTACCTTGTCATCTCCTATTTCAGCTTAGATTAAGTACAACAATGATTTTTCTTATCCTCTTGCTTTAACAAAGTGGTTTCACTTATTACATGTTAGATCGGATATGAATTCAACTTTTTGAGAGAGGCTGATGCAATGGATAGAATTCGGCGTTTTCTCTACGAAAATAACAAAAAGTCCCCAGTTATGGTTCCACGGGTGATTCGAGATATTGTCACAAGGTGAGCTCTCTGTGGAATATTTGACTAATTGATGTTTTCTTATCTAAATATTGGTAGCTTTGATCTTCAATAAACATTTGAAATGTCTTGCTGTAATGAGGTGGATCAAGCGATTGTTTGAAACTGATTAATCATTACTGTAACTGTCTTGCTTTGTAAGATGCTTCTCTGTTATTTCTTCAATAATCTTGCATGTCCTTTTGTTCTTATTGTCACAAGGTTCATATGTTAGCTCAAGCCACTGTAAAACTTCCGATGAATGTGCTGTCTCACATCTTGTTTGCTTTCATCATTCCAACAACATATAGATGTTCGCTAGGTTCATTAACTTTTCGATTAGTTTGTTTCTATTCTTTGTTGGATGTATGAACTTTACAGCTACAGTGTAACTTACTTTTCAGATTACTTTAATAATCCATTTTTTCCTATAATATTTTTAAAAGGAGGGTCCTAGTGATGGAATATATAGATGGAACCCCGATTCTGAAGCTAGGAGATGAAATGGCAAAGAGAGGCATCAGTCCAGATGGTAAAATTGCAGCGGTAGCAAGGCAGTAAGAACCTATATTTCTCAGAGTGAATTTGGCTTCTAAAATAATTTAGGTTACTGTCTCTGGTATATATATTATCTCTGTTAAATTAAACTGATAACATTGGCGATAGTGGAAGCAATATTTAACTTATGAATATTTATGCAAATAAAGATATGCGTTGAGTGAAACTAACACAATAATGTATGTAGAACCCGAAAACCTTGTTAAACACTTGAAAACACCAGATTAATTCAGGAAATCTGGCCTAAATTTTAGTTAAACCCCACAATCTCATGTATTGAAATGAATTACCTTGTGAAAATCAGGAGTTCTTCAAATAACAAAGGAAAATATATTCCTCTCTCAGTAATCTGAAAATGATCATCAAAGCACACTGAAGAATCCCTTTAGGGTGGCTATGAATCTGTATATTTGGGATCATTATAAAAGTATCAAGATTGTCTAGGATTGACACAGATTTTTGCTAGGTTGGCAGCAAAATTTCCTCATTTTGTGGCAGAGTGGCGCCAAGTTCAGCATTATTTTTTCTGCGTCGTGGTTAATGCAGATTTGCGCCAAGCACTGCACCTTGGCTCTAACTTTGGCTCCAGATCATCTTCCTACTTGGTCACAAGCACATTAAAAGTCTACAAGGCATCTCCAAGCCTTTTTAGCTCATTTTCCACACGCTCTTAACACAAAAAAACTGGTTTCCAAATTATTCCTAAGTTAAGTGGTGATTACGTCACAGTTCACACTTATCTCATGAAAGATTCCATTTTACCCCTGTACTGACTTGTTTGAGATGAGATTCTTTGACATCTTCCTTCTAAACCAGAAGAAGTTTTGACGATGACTCACCACATACCTTTTGAAGAAAATAAAGTATATTAGCAAATGCTACATAGCTTGAGATGTTGGTTGTATAAAAACGTTCCAGCACACAAACTTGCTTGACCTTTCGAAATTCTCTGCCTTTTGCCATGTAAACTGAAGGAGTTGGTTTTGTCCCTGTGGGGTCAAATCAATGGATGAAAATTCCATGTGCCAATTTACTTGGCTATAAATTGACAAGATTCAAGATGAATTAATGTGAAGATTTTGTATGAAGATAATTCTTCATTGGTACAAAATAAAAGGTCAAGATAGTAATTTTGTAGGTGAAATTTAGGTAAACCATAAAATGGTTACACATAGTAAACCTTGACATTTTGACACATAGTGATGTCATGGATGACATCAATAAAAAGAATTAATTTCTATAAATAGGAAGCTCTTAATTCATTTGTAAGACGCCTTTGACTTGTCTTTTCATCTTCCAAGACATTTGATGTTGTTTCTCTCTTGTAATATTTCACTTGTATTCTTTTTAAGTGAAACAAATACTGGTGCAGTTGTTATCCGGTGGACGTAGGATCATTCTGATCCGAACCACGTTAAATATTGTTATGCTTCCTTGTTTTTTATTTTCACATTTCCGCTAACAATTTGCATCAGAGCCAAGGATCTATTTGTGTATACTCTGTGCTTTCAACACAATTTGAACTTCCACATCAAAAAAGAATTACTTTGTTTTTCTGTATTTTCAAATACTTCGTAGTAGAAGAAGAACAAGTAACAATGAGTTCCATGAAGTTTGAAATTTATAGATTTAATGGGCGCAACTACTTCAATATTTGGATGATCCAGATGATGACGTTACTGCGGAGGAAAGGTTCAATCCATGCTATTGACGAAAAGTACCCCAATAATACATCGAATCTCGACAAGAAAAAGATTGAAGGAGATGCATCAAGTGTAATCCAACTGTCCCTTTCACCTAATGTGCTCTGTGAAGTGAGCACAAGTACTAAGGAGACGGTTTAACAGTTGTGGGAAAGGCTGAAAGGGCAACCGTTTGGTGACAACAAGGATGTTGCTATAATGGTGTCTTCACACATTTAAGATGGAGTTAGGTACTTTGTTGCAGGACCATCTCGACGCGTTCAATAAACTTGTGATGGACTTAAAGACTGCTGGAATTTAAAAAGGAAGAGGAGACGCTTGCATATGCTTTGCTATTTTCATTGACTTCAAAATATCGTGATTTGAAAATTCATTTCCTATCACTCTTTGAGCAATTGCGACAAGTACTTAACTCTTGGGGCGGTTACAAGAAGAGGCATTTTGAACGAGATTGTCTTATGTCAAAGTCCAAAGAAAAGGCGAGTGCATCTACTATTGAGCGGCTACATGATTCCGATGATGATTATGTACTAAGAATATTATCCAATAGTGGAGTCTATGACAATAGATGTATGTTAGATTCTGGTTGTACTCTGCATATGATATTCCGAAGAGATTGGTCCAGCGACTATGAAACAAATGGAGGAACCATAACAATGGGCAATAGTGTAACTTGTAAAAGAATTGACATTGGTTCAATTTGGGTTTGCTGCCTTGATGGAATCATGAGGACTATTATAAAAGTCTGTCATGTTCTTGATCTGAAGAACCTCGGGTGCTTTGGATGAACAAGGCTACAAGTACATGAGCAAAGGGAACTCTGAAAGTGACTAAAGGGTCTTTAGTCATGTTGAAGGCCAAGTTGGAGGATGACCTCTACACAATAGAAGAAAGCACCCTTGTGCAGTTATCTTATGATGTTAAAGAAAATTTATGGCTCATGAGACTAGGTCATGTAAGTGTACAAGGACTGGAGATATTGAGCAACTACAACCTTTTGAATGGTGAGAAGATCAACACACTTGAATTTTGTGGGCTCTGCGTCTTAAGGAAGCAGATGTAGGTCAACAACCCTATAAATCTGAATAGATGTAGTCTAGCACCCCTCCCATCTTGTGCTTGCTAGTGTTGGCCACAAATAGCCCACTAGCTTTGTCACATTTGTCTCCTTCAAAATGTCTCCGCACATCACAAGAATTAAGTGGTTACCGCACTTGCTCAAGAGTGATAGGCTCCTTGCTATACATCATTGAATTCTCAATATCATGATATTTGGAAGTCTATGAAAATAGAAAAGAACATGCATGTGTCTCCTCATCCTTGTTAATTTCAGCAGTCTGAAAGTCTATCACAAGTTTATTGAACGAATCTATTTGAACCTGCAAAAAAGTACCTAAATCCATCTTAAATGTGTGAAGACACCGTTGTAACAACATCCTTGTTGTCATTGACCCATCTTGGTAAAGGCCTTCCAACCTTTCTCATAATTATTTGACGGTCTCCTCGGTACTTATCCTCACTTCACAAAGCAATTTAGGTGCAAGGGATAGTTGAATTACACTCAATGCATCTTCTTCTTGTTGGAATTCGATGTGTTATCGGGGTACTTACCGTCAATAGCAGTGATTGAACCTTTCCTCCTAATAACGCCATCATCTGGATCTTCTAGATGTTGAAGTTGTTGCATCTCACTAAATCTATCAATTTCAAACTTTATGGAACTCACCTTACTTGTTCGTCCTCTTCTAATACAAAGTATTTGGAAATACAGAAAACCAAAGTAAAGAAATGTGGGAGTTCATATTATGTTGCAACCCCTTGGCTCTGATACCAATTATTAACGAAAACGTAAAAATAAAGAACAAGGAAGAACAACTATATTTAACGTGGTTCGGATCAGAATGATCCTATATCCACTGGAGAACAACTGGAGAACAACTGTACTTATATTTATTTCACTCCAAAACATTACAAGTGAAATATCACAAGAGAGTAAGAAGATAAAGTGCCGTAGAAGATGAGAAGGCAAGTGAGAGTTGTCTTACAACTGAATTAAGAGCTACTTATTTATAGGAATGAATTCTTCTTATTGATGTCATCCATGACATCAGAACGTGTCAAAATGTCAAGGTTTAATATGTGGAACCAATTTATGGGTTACTTAAATGTCACCTACCAAGTTACTATCTTGAACTTTTATTTTGTACTAATAAAAAATTATTTTTTAACAGTACTTCACATTAATTCATCTTGAATCTTGTCAATTCCTAGTAAATTAAATTGACACATGGAATTTTCTTCCATTGGGTTTGACCCCACAAGGACCAACCAACTCTTTCAATCTCCACTGTTATCTACTATTTATAAAGTTAGTAGTTTCTAATTGTTCGAAGGATCATTTCAACCTGATTCTGTTTCATTGAGAATATGGTAAACTGGGGTACTATTCTCTTATTTGTTACTTCTACATGCAGGAACATACTTAAAAGTTTGTCCCTAGCTTATGGACAAATGATACTCAG</genome_strand>
        <mrna_strand>GTGGGTTCTTCCTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTCAACTAATTGGGAAGCCAGACTTGGCCCCTGCTGCATGGGTGAGAAGGTTAGTTACTCTATGTGATCAAGCGCTTGCTACACCGTACAATGTGATCAGGGCTGTGCTGGAGAAGGAATTGGATCAGAATCTTGATGAATTGTTTGAAAGTTTCGATGTCGATCCTCTCGGTTCTGCTTCTATTGCACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATAGAGCAAGACTCAAAGGTGACAAAAAAGATGTTGTTGTCAAG.......................................................................GTGCAACACCCTGGGGTCCAAGAGCTGATGATGACCGATATCCACAACTTGCAAGCTTTTGCACTATACTTGCAGAAGATAGATATAAAATTCGATATATACTCTTTGACAAAAGAAATTGAGAAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGATATGAATTCAACTTTTTGAGAGAGGCTGATGCAATGAATAGAATTCGGTGTTTTCTCTACGAAAATAACAAAAAGTCCCCTGTTATGGTTCCACAGGTGATTCGAGATATTGTTACAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTCCTAGTGATGGAATATATTGATGGAACCCCAATTCTGAAGCTGGGAGATGAAATGGCAAAGAGAGGAATCAGTCCAGATGGTAAAATTGCAGCAGTAGCAAGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACATTCTTAAAAAGTTGTCCCTAGCTTATGGACCAATGATACTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E407253" ref_strand="+" ref_description="SGN-E407253 [PPI-6-D3]">
      <seq>gtgggttcttcctaaaggttgctcaactaattgggaagccagacttggcccctgctgcatgggtgagaaggttagttactctatgtgatcaagcgcttgctacaccgtacaatgtgatcagggctgtgctggagaaggaattggatcagaatcttgatgaattgtttgaaagtttcgatgtcgatcctctcggttctgcttctattgcacaggttcatagagcaagactcaaaggtgacaaaaaagatgttgttgtcaaggtgcaacaccctggggtccaagagctgatgatgaccgatatccacaacttgcaagcttttgcactatacttgcagaagatagatataaaattcgatatatactctttgacaaaagaaattgagaaacagatcggatatgaattcaactttttgagagaggctgatgcaatgaatagaattcggtgttttctctacgaaaataacaaaaagtcccctgttatggttccacaggtgattcgagatattgttacaaggagggtcctagtgatggaatatattgatggaaccccaattctgaagctgggagatgaaatggcaaagagaggaatcagtccagatggtaaaattgcagcagtagcaaggcagaacattcttaaaagtttgtccctagctttatggacaatgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="34113" stop="24709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33813" g_stop="33797" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33796" i_stop="33029" i_length="768">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33028" g_stop="32834" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="212" r_length="195" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32833" i_stop="31628" i_length="1206">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31627" g_stop="31580" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="260" r_length="48" r_score="0.917"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31579" i_stop="31509" i_length="71">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.822" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31508" g_stop="31380" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="389" r_length="129" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31379" i_stop="29910" i_length="1470">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.829" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29909" g_stop="29785" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="514" r_length="125" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29784" i_stop="29342" i_length="443">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29341" g_stop="29231" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="625" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29230" i_stop="25053" i_length="4178">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25052" g_stop="25009" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="669" r_length="44" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E407253" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33813" e_stop="33797"/>
          <exon e_start="33028" e_stop="32834"/>
          <exon e_start="31627" e_stop="31580"/>
          <exon e_start="31508" e_stop="31380"/>
          <exon e_start="29909" e_stop="29785"/>
          <exon e_start="29341" e_stop="29231"/>
          <exon e_start="25052" e_stop="25009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGTTCTTCCTAAAGGTATACTCTGTAACCAGCTTCCCATTTTCCGTTTCCTAATATAGAATTGATTCAAATCTCAAACCATTATCGTTGACTCGTTGTTTATTACAACTTCAAGTGGAGTGTGAAGAGGGTAGGATGTAGGCAGACCTTATCCCTTCGTTTTAGGTTTGTTTCCGATAGAGCCTTAATTCAAAAGGAAGTAATCAGAAAGCGTAAAAGAAAGAAATAGAATTCATGGTAGCTACGACCCAAACAAGCTGTTAAGTGTTAATGGTCCTTTGTTGTTTATTAACTCTACAAGGAAAAAGATTTCTGCATTTAGTGTTCCCTTTTAATAAATTTAATTAAGTTTATGCAGTTATATTGGGATATGTGCACTAGTCTGTGCTGGCTGCAGCATGCACTGCTGTGCTCTATTCATCATTATGCTCATGAGATTGTTGTATTGCTTCCACGTTACAGAGTTCCCTGAGGGTTGCTTCCATATTTTAACCCCAGGGATTTGGTCTAGTGGTAAGAGGTGTGGCGGACCCGTGATGTGTGATTTAGGTGCACGTCATGGGTACCCTGTTGCAAGCAATTCCTGGTATGTAAATGGAAAGGGGTAGAGGGGAGGACTCATAATCCACTGAGTTTCGAACCATGGACCATTAGCTCTTGGGAATTTCTCTGTTATTAGATAAAAGAATGGTCAAGAGGGTTTATATTTGGGCTTCACAACTCATAATTCATCTTAAGATCTAATTATGTGGATGGTGATGGTAATATTATTATTAATATTAGGTTGCTCAACTAATTGGGAAACCGGACTTGGCCCCTGCTGCATGGGTGAGAAGGTTAGTTACTCTATGTGATCAAGCGCCTGCTACACCGTACAATGTGGTCAGGGCTGTGCTGGAGAAGGAATTAAATCAGAATGTTGATGAATTGTTTGAAAGTTTTGATTTCGATCCTCTCGGTTCTGCTTCTATTGCACAGGTAACTGTTAAGCTTGATTTAAAGCATTACTAAAGCTCATTTTAGAGCGACAAAAATTTCTTCAAGCATTGACTAGAAACTTCATGTTAATCAAACAGTTGTTAAAAATATTGACCTTGCAGATAGTAAATACATTTAGATTTGTTGAAGTGTGTGACTATCATATCTAAAAGTCTAAGTTATTACAGGGGTGACACATTTATTTAGTATGTTAGGTTGCAAATTTTTCACTCGAATTAGGACCAACTCTTTTTTCTTGGGCTTTTACCTGGAAGTTAATTTCCACTAATAGGTTGTGGAACACAGTAGGCACGTAATAGACACAACAGCACCCTAATTCCAGCAATAATAGCAAAAACATTGCCACTTACATGTTAGGCAAGGGAAACTGCCTAAGAAGATACACCAAACAAGTTTTTCAATCTTTGCTGTGGCTGATATATTATAATGTCTAACAATCTCTAGTATATTCTTAATTTTTATGGTTTATGTAGGGCCTTAGCCCTATCCCAACAACAACAGTAGCTTTTGTTTGCAATGAAGAATATATATTTCAAAAGGATTTTTTTGTATATTTTACATTTTGCATTGTATGGAAATGTGGCTCCTTTCATGAGTCCTTTTTGTTAAATGCAAAATTTGTTCATAGCTAACATGCAAGTGACGACAAGTACATCCATGATCATGACTCATGATGATGAAGATGTGAAATATACCAATAAAAAAATGAATAATGAGCCATTTTCAAATCTTTATATAGGTATAACATGCCACAAAATATATGCTAGAACTTCTTTTCAACAAGTAGACTGTGCACTGATACTTTCTTTCTTTTCCTAGTTAGCTGATTTCCTTAATCAAGTTTTGTTGTTCTTGCTCCTTCTAACAAGATGGAGGTTTATTTGATCTGAGGAAACTTTCAGCTGAAATAGTTTCTTAGGACATCGTCTAGCACTAAGCTTTGTGTATATCTGTTCACAAATGAATAAATATTCATTTTCTATTGTTCTCCTTACTTCTCAACAGCTTTAACCTTAAAACAGTGTGATACATGGCTTTGAAGGCCAAACCTGTTAGGCAGTTTAAAGTCAGATAAATAATTATTTCTAAATGTCATATCTTTGAGCTGTATTCTAGTTATACAGAGGAATTAATATTACTTTGATCCTAAGTGGTTCAACTTGTGTTTACTTTACTTGGAATTAGGTTCACAGAGCGAGACTCATAGGTGACAAAAGAGATGTTGTTGTCAAGGTAAGAAAAATTGACTCATAACTTTGCAGATTGTTGTGATCATAAGGTTCTAAAGTAGTTGTCTTCTCTAGGTACAACACCCTGGGGTCCAACAGCTGATGATGACCGATATCCACAATTTGCAAGCTTTTGCACTATACTTGCAGAAGATTGATATAAAATTCGATATATACTCTTTGACAAAGGAAATTGAGAAACAGGTGCATAAAATTTCCGTATATGCATTATTTACTCTTATCATCTATTGTTTCTCTTTAGCCAGAATAAGGTAAAATGTAATTTCATTAAATAACAGCACCAAGGAGGTGCATGTTGCAAATATTTACATCCATATTCAGTTGTTCCTAGTTTCTAAATCGGGAACTAATAAATTGTATTAAGTGACTAGGAGGGCTTTCTATTTTCCTTAATTCTTTCCTGATGATCTTCATTACCTTTTCCAATAAGAACTTGTTATTTTCTTTATTGTTTTTAGTGAAAGCCTTAAAAGTTAAAACCTGCCTTAATGAGTAAGACTCAAATTCTGGGTGTGAATTTCTGATATGTTTCCTAATTTATAGCCATGTGTCTTCTGTGAACTTCTTTGACAACCAGATGTTCGTGAATCCATATTTAGCATTAATGATGTTTTCCCTAGAAACATATTAATCTAGCACCGACCTTTCTCATGCGCGGAAGTAGTAGCCTGCATACGGGTTCGGCCGAACCCAGTAGATTGTCTCAAATAGTGTATTTGTGTTAATAAATACATTAAATAGGTCAAATATTAAATTTAGAAGTTAGAACCGAGTTATTATCACTTGAAAACGTCATTGTCAAATTCAGAACGCAAAAGATGAAATCCTAGCTTCGCCTATGTCATTCATTGCCATTCAAATAATAAGCACATATTGTGAATTTCCATATTTCACACCCATTATCCTGCTTTACTTTTGTCATAATTATTTTCTCCCCTATATGAGATGAAATTTCTTATCTGTCCACATCCATCCATAAGAAGTTAAAACGTAATCATCAATAGTTGTTTCTTCACCTTGTGTAGTATGCGGATAAAGGACATGGGTAGGTCTTCCAATACACTATCTATCAAGGTAAAAGATATTGTTTCTTCCATGTAAGCATTCTTTTCCCAAATTCATAACTTATTGCTTGCCACCCAGTAGCAGTTTTGTATTTTGCCTCCAGAGGCCAGCCAAATTAGGTGGAAGGAAATGTGGCTATGTTGCATTGCAGAATATTTGCTGACACCTGAAAATTTCCTACTTCATTCACTGGATATAAACATGATTTTTCTCTTCTAAGATAACTTACTTTATGAAAGATGGCTCTTCGTAGCCATTGTAGATTTCTGTTCATCTAAATATTGAGGAAACACTTTGGTACAGTAATTCCAAAAGCTTCATGCAATGTAAGTCTTCTTTATAGGTAGTTTCAATTAGCTGGATGGTGCATTATGATCTGTATTGATGGTATGATTGCGAATTATTTTGATGATATCTGTTGTTTCTCACAAATGTTCTTAAAGACAACTCATCTCAGTTGTTTGCTCATGGCTTTACATGCAACTTGGTATTTACCTTGTCATCTCCTATTTCAGCTTAGATTAAGTACAACAATGATTTTTCTTATCCTCTTGCTTTAACAAAGTGGTTTCACTTATTACATGTTAGATCGGATATGAATTCAACTTTTTGAGAGAGGCTGATGCAATGGATAGAATTCGGCGTTTTCTCTACGAAAATAACAAAAAGTCCCCAGTTATGGTTCCACGGGTGATTCGAGATATTGTCACAAGGTGAGCTCTCTGTGGAATATTTGACTAATTGATGTTTTCTTATCTAAATATTGGTAGCTTTGATCTTCAATAAACATTTGAAATGTCTTGCTGTAATGAGGTGGATCAAGCGATTGTTTGAAACTGATTAATCATTACTGTAACTGTCTTGCTTTGTAAGATGCTTCTCTGTTATTTCTTCAATAATCTTGCATGTCCTTTTGTTCTTATTGTCACAAGGTTCATATGTTAGCTCAAGCCACTGTAAAACTTCCGATGAATGTGCTGTCTCACATCTTGTTTGCTTTCATCATTCCAACAACATATAGATGTTCGCTAGGTTCATTAACTTTTCGATTAGTTTGTTTCTATTCTTTGTTGGATGTATGAACTTTACAGCTACAGTGTAACTTACTTTTCAGATTACTTTAATAATCCATTTTTTCCTATAATATTTTTAAAAGGAGGGTCCTAGTGATGGAATATATAGATGGAACCCCGATTCTGAAGCTAGGAGATGAAATGGCAAAGAGAGGCATCAGTCCAGATGGTAAAATTGCAGCGGTAGCAAGGCAGTAAGAACCTATATTTCTCAGAGTGAATTTGGCTTCTAAAATAATTTAGGTTACTGTCTCTGGTATATATATTATCTCTGTTAAATTAAACTGATAACATTGGCGATAGTGGAAGCAATATTTAACTTATGAATATTTATGCAAATAAAGATATGCGTTGAGTGAAACTAACACAATAATGTATGTAGAACCCGAAAACCTTGTTAAACACTTGAAAACACCAGATTAATTCAGGAAATCTGGCCTAAATTTTAGTTAAACCCCACAATCTCATGTATTGAAATGAATTACCTTGTGAAAATCAGGAGTTCTTCAAATAACAAAGGAAAATATATTCCTCTCTCAGTAATCTGAAAATGATCATCAAAGCACACTGAAGAATCCCTTTAGGGTGGCTATGAATCTGTATATTTGGGATCATTATAAAAGTATCAAGATTGTCTAGGATTGACACAGATTTTTGCTAGGTTGGCAGCAAAATTTCCTCATTTTGTGGCAGAGTGGCGCCAAGTTCAGCATTATTTTTTCTGCGTCGTGGTTAATGCAGATTTGCGCCAAGCACTGCACCTTGGCTCTAACTTTGGCTCCAGATCATCTTCCTACTTGGTCACAAGCACATTAAAAGTCTACAAGGCATCTCCAAGCCTTTTTAGCTCATTTTCCACACGCTCTTAACACAAAAAAACTGGTTTCCAAATTATTCCTAAGTTAAGTGGTGATTACGTCACAGTTCACACTTATCTCATGAAAGATTCCATTTTACCCCTGTACTGACTTGTTTGAGATGAGATTCTTTGACATCTTCCTTCTAAACCAGAAGAAGTTTTGACGATGACTCACCACATACCTTTTGAAGAAAATAAAGTATATTAGCAAATGCTACATAGCTTGAGATGTTGGTTGTATAAAAACGTTCCAGCACACAAACTTGCTTGACCTTTCGAAATTCTCTGCCTTTTGCCATGTAAACTGAAGGAGTTGGTTTTGTCCCTGTGGGGTCAAATCAATGGATGAAAATTCCATGTGCCAATTTACTTGGCTATAAATTGACAAGATTCAAGATGAATTAATGTGAAGATTTTGTATGAAGATAATTCTTCATTGGTACAAAATAAAAGGTCAAGATAGTAATTTTGTAGGTGAAATTTAGGTAAACCATAAAATGGTTACACATAGTAAACCTTGACATTTTGACACATAGTGATGTCATGGATGACATCAATAAAAAGAATTAATTTCTATAAATAGGAAGCTCTTAATTCATTTGTAAGACGCCTTTGACTTGTCTTTTCATCTTCCAAGACATTTGATGTTGTTTCTCTCTTGTAATATTTCACTTGTATTCTTTTTAAGTGAAACAAATACTGGTGCAGTTGTTATCCGGTGGACGTAGGATCATTCTGATCCGAACCACGTTAAATATTGTTATGCTTCCTTGTTTTTTATTTTCACATTTCCGCTAACAATTTGCATCAGAGCCAAGGATCTATTTGTGTATACTCTGTGCTTTCAACACAATTTGAACTTCCACATCAAAAAAGAATTACTTTGTTTTTCTGTATTTTCAAATACTTCGTAGTAGAAGAAGAACAAGTAACAATGAGTTCCATGAAGTTTGAAATTTATAGATTTAATGGGCGCAACTACTTCAATATTTGGATGATCCAGATGATGACGTTACTGCGGAGGAAAGGTTCAATCCATGCTATTGACGAAAAGTACCCCAATAATACATCGAATCTCGACAAGAAAAAGATTGAAGGAGATGCATCAAGTGTAATCCAACTGTCCCTTTCACCTAATGTGCTCTGTGAAGTGAGCACAAGTACTAAGGAGACGGTTTAACAGTTGTGGGAAAGGCTGAAAGGGCAACCGTTTGGTGACAACAAGGATGTTGCTATAATGGTGTCTTCACACATTTAAGATGGAGTTAGGTACTTTGTTGCAGGACCATCTCGACGCGTTCAATAAACTTGTGATGGACTTAAAGACTGCTGGAATTTAAAAAGGAAGAGGAGACGCTTGCATATGCTTTGCTATTTTCATTGACTTCAAAATATCGTGATTTGAAAATTCATTTCCTATCACTCTTTGAGCAATTGCGACAAGTACTTAACTCTTGGGGCGGTTACAAGAAGAGGCATTTTGAACGAGATTGTCTTATGTCAAAGTCCAAAGAAAAGGCGAGTGCATCTACTATTGAGCGGCTACATGATTCCGATGATGATTATGTACTAAGAATATTATCCAATAGTGGAGTCTATGACAATAGATGTATGTTAGATTCTGGTTGTACTCTGCATATGATATTCCGAAGAGATTGGTCCAGCGACTATGAAACAAATGGAGGAACCATAACAATGGGCAATAGTGTAACTTGTAAAAGAATTGACATTGGTTCAATTTGGGTTTGCTGCCTTGATGGAATCATGAGGACTATTATAAAAGTCTGTCATGTTCTTGATCTGAAGAACCTCGGGTGCTTTGGATGAACAAGGCTACAAGTACATGAGCAAAGGGAACTCTGAAAGTGACTAAAGGGTCTTTAGTCATGTTGAAGGCCAAGTTGGAGGATGACCTCTACACAATAGAAGAAAGCACCCTTGTGCAGTTATCTTATGATGTTAAAGAAAATTTATGGCTCATGAGACTAGGTCATGTAAGTGTACAAGGACTGGAGATATTGAGCAACTACAACCTTTTGAATGGTGAGAAGATCAACACACTTGAATTTTGTGGGCTCTGCGTCTTAAGGAAGCAGATGTAGGTCAACAACCCTATAAATCTGAATAGATGTAGTCTAGCACCCCTCCCATCTTGTGCTTGCTAGTGTTGGCCACAAATAGCCCACTAGCTTTGTCACATTTGTCTCCTTCAAAATGTCTCCGCACATCACAAGAATTAAGTGGTTACCGCACTTGCTCAAGAGTGATAGGCTCCTTGCTATACATCATTGAATTCTCAATATCATGATATTTGGAAGTCTATGAAAATAGAAAAGAACATGCATGTGTCTCCTCATCCTTGTTAATTTCAGCAGTCTGAAAGTCTATCACAAGTTTATTGAACGAATCTATTTGAACCTGCAAAAAAGTACCTAAATCCATCTTAAATGTGTGAAGACACCGTTGTAACAACATCCTTGTTGTCATTGACCCATCTTGGTAAAGGCCTTCCAACCTTTCTCATAATTATTTGACGGTCTCCTCGGTACTTATCCTCACTTCACAAAGCAATTTAGGTGCAAGGGATAGTTGAATTACACTCAATGCATCTTCTTCTTGTTGGAATTCGATGTGTTATCGGGGTACTTACCGTCAATAGCAGTGATTGAACCTTTCCTCCTAATAACGCCATCATCTGGATCTTCTAGATGTTGAAGTTGTTGCATCTCACTAAATCTATCAATTTCAAACTTTATGGAACTCACCTTACTTGTTCGTCCTCTTCTAATACAAAGTATTTGGAAATACAGAAAACCAAAGTAAAGAAATGTGGGAGTTCATATTATGTTGCAACCCCTTGGCTCTGATACCAATTATTAACGAAAACGTAAAAATAAAGAACAAGGAAGAACAACTATATTTAACGTGGTTCGGATCAGAATGATCCTATATCCACTGGAGAACAACTGGAGAACAACTGTACTTATATTTATTTCACTCCAAAACATTACAAGTGAAATATCACAAGAGAGTAAGAAGATAAAGTGCCGTAGAAGATGAGAAGGCAAGTGAGAGTTGTCTTACAACTGAATTAAGAGCTACTTATTTATAGGAATGAATTCTTCTTATTGATGTCATCCATGACATCAGAACGTGTCAAAATGTCAAGGTTTAATATGTGGAACCAATTTATGGGTTACTTAAATGTCACCTACCAAGTTACTATCTTGAACTTTTATTTTGTACTAATAAAAAATTATTTTTTAACAGTACTTCACATTAATTCATCTTGAATCTTGTCAATTCCTAGTAAATTAAATTGACACATGGAATTTTCTTCCATTGGGTTTGACCCCACAAGGACCAACCAACTCTTTCAATCTCCACTGTTATCTACTATTTATAAAGTTAGTAGTTTCTAATTGTTCGAAGGATCATTTCAACCTGATTCTGTTTCATTGAGAATATGGTAAACTGGGGTACTATTCTCTTATTTGTTACTTCTACATGCAGGAACATACTTAAAAGTTTGTCCCTAGC-TTATGGACAAATGATAC</genome_strand>
        <mrna_strand>GTGGGTTCTTCCTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTCAACTAATTGGGAAGCCAGACTTGGCCCCTGCTGCATGGGTGAGAAGGTTAGTTACTCTATGTGATCAAGCGCTTGCTACACCGTACAATGTGATCAGGGCTGTGCTGGAGAAGGAATTGGATCAGAATCTTGATGAATTGTTTGAAAGTTTCGATGTCGATCCTCTCGGTTCTGCTTCTATTGCACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATAGAGCAAGACTCAAAGGTGACAAAAAAGATGTTGTTGTCAAG.......................................................................GTGCAACACCCTGGGGTCCAAGAGCTGATGATGACCGATATCCACAACTTGCAAGCTTTTGCACTATACTTGCAGAAGATAGATATAAAATTCGATATATACTCTTTGACAAAAGAAATTGAGAAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGATATGAATTCAACTTTTTGAGAGAGGCTGATGCAATGAATAGAATTCGGTGTTTTCTCTACGAAAATAACAAAAAGTCCCCTGTTATGGTTCCACAGGTGATTCGAGATATTGTTACAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTCCTAGTGATGGAATATATTGATGGAACCCCAATTCTGAAGCTGGGAGATGAAATGGCAAAGAGAGGAATCAGTCCAGATGGTAAAATTGCAGCAGTAGCAAGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACATTCTTAAAAGTTTGTCCCTAGCTTTATGGAC-AATGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E477177" ref_strand="+" ref_description="SGN-E477177 [cSTB-47-O2]">
      <seq>gcagttttgcattttgcctccagaggccagccaaattaggtggaaggaaatgtggctatgttgcattgcggaatattttctgacacctaaaaatttcctacttcattcactggataaacatcatttttttctcttctaagataacttttgtatgaaagatggctcttcgtagccattgtagatttctgttcatataaatattgaggaaatactttggtacagtaataccaaatgcttcatgcaatgtaagtctgctttataggtagtttcaattagctggatggtgcattatgatctgtattgatggtatgatcacgaattactttgatgatatctgttgtttgtcacaaatgtccttaaagacaactcgtctcagttgttttctcatggcgtgaaatgcaacttggtatttgccttgtcatctcctatttcagcttagattaagtacaacattgattttgcttatcctcttgctttaacaaactggtttcacttattacatattagattggatatgaattcaactttttgagagaggctgatgcaatgaatagaattcggcgttttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="30717" stop="29547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30417" g_stop="29847" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E477177" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30417" e_stop="29847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTTTTGTATTTTGCCTCCAGAGGCCAGCCAAATTAGGTGGAAGGAAATGTGGCTATGTTGCATTGCAGAATATTTGCTGACACCTGAAAATTTCCTACTTCATTCACTGGATATA-AACATGATTTTTCTCTTCTAAGATAACTTACTTTATGAAAGATGGCTCTTCGTAGCCATTGTAGATTTCTGTTCATCTAAATATTGAGGAAACACTTTGGTACAGTAATTCCAAAAGCTTCATGCAATGTAAGTCTTCTTTATAGGTAGTTTCAATTAGCTGGATGGTGCATTATGATCTGTATTGATGGTATGATTGCGAATTATTTTGATGATATCTGTTGTTTCTCACAAATGTTCTTAAAGACAACTCATCTCAGTTGTTTGCTCATGGCTTTACATGCAACTTGGTATTTACCTTGTCATCTCCTATTTCAGCTTAGATTAAGTACAACAATGATTTTTCTTATCCTCTTGCTTTAACAAAGTGGTTTCACTTATTACATGTTAGATCGGATATGAATTCAACTTTTTGAGAGAGGCTGATGCAATGGATAGAATTCGGCGTTTTCTC</genome_strand>
        <mrna_strand>GCAGTTTTGCATTTTGCCTCCAGAGGCCAGCCAAATTAGGTGGAAGGAAATGTGGCTATGTTGCATTGCGGAATATTTTCTGACACCTAAAAATTTCCTACTTCATTCACTGGATAAACATCAT-TTTTTTCTCTTCTAAGATAACTT-TTGTATGAAAGATGGCTCTTCGTAGCCATTGTAGATTTCTGTTCATATAAATATTGAGGAAATACTTTGGTACAGTAATACCAAATGCTTCATGCAATGTAAGTCTGCTTTATAGGTAGTTTCAATTAGCTGGATGGTGCATTATGATCTGTATTGATGGTATGATCACGAATTACTTTGATGATATCTGTTGTTTGTCACAAATGTCCTTAAAGACAACTCGTCTCAGTTGTTTTCTCATGGCGTGAAATGCAACTTGGTATTTGCCTTGTCATCTCCTATTTCAGCTTAGATTAAGTACAACATTGATTTTGCTTATCCTCTTGCTTTAACAAACTGGTTTCACTTATTACATATTAGATTGGATATGAATTCAACTTTTTGAGAGAGGCTGATGCAATGAATAGAATTCGGCGTTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E331363" ref_strand="+" ref_description="SGN-E331363 [cTOD-9-A18]">
      <seq>ttttcaagaaaaggtatctgcttgtttcagacggtggcagcgttctttccagttttgggttcgtgcagtagatatatatactggttataaggtgtttcaattaagagttggatttgaaaaggatgtgcaaaaacaagaagcaatgtgggagaggcagcatgaggttgcagctgagaagatatataatatgtgctctgaccttggtgggttcttcctaaaggttgctcaactaattgggaaaccggacttggcccctgctgcatgggtgagaaggttagttactctatgtgatcaagcgcctgctacaccgtacaatgtggtcagggctgtgctggagaaggaattaaatcagaatgttgatgaattgtttgaaagttttgatttcgatcctctcggttctgcttctattgcacaggttcacagagcgagactcataggtgacaaaagagatgttgttgtcaaggtacaacaccctgnggtccaacagctgatgatgaccgatatccacaatttgcaagcttttgcactatacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="34958" stop="31137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34658" g_stop="34568" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34567" i_stop="33926" i_length="642">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33925" g_stop="33797" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="220" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33796" i_stop="33029" i_length="768">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33028" g_stop="32834" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="415" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32833" i_stop="31628" i_length="1206">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31627" g_stop="31580" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="463" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31579" i_stop="31509" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31508" g_stop="31437" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="535" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E331363" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34658" e_stop="34568"/>
          <exon e_start="33925" e_stop="33797"/>
          <exon e_start="33028" e_stop="32834"/>
          <exon e_start="31627" e_stop="31580"/>
          <exon e_start="31508" e_stop="31437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAAGAAAAGGTATCTGCTTGTTTCAGACCTTGGCAACGTTCTTTCCAGTTTTGGGTTCGTGCAGTAGATATATATACTGGTTATAAGGTACCCTTTTTCATTTTTTTTTTCTCAAGTTTTGATTTTGTTAGTGGAACTGATTCATTTTTAATGTGATATCTTATCTTATCCCATTTTTCCCAAATATTAGTGAACAGTGGCACTGAATTGAGTTCTATTTTCTCATTTCCATTTTCCCATATTAATTTAACTTTTGAGGATGCACATCTACATACGTCAACTCGTGTCCATTGTATCAGTTGAGCAATCACAATTACAAGATAATCATCCAGACACTTGTAAAATTTTGTGGCATGTTAGTGTCGGATATCCATGGGACACAGGAGAGATGAGTTGATAGTTGAAACCAAAGTTGAGGTGTCTAGATATGTTCATTTGTCAACCAAGGTCAAGTTTAAGTGTTTGTTTATGTATTATGCCTAAATTTTTTTATAATTTGAAGAATTTAGGATATATATACAAAATGATTTTAAATTCTACAAATTAGTTGGTCTAATTTTACAGTTGTTACCTCTATGATTAATGTAGAAGAGTGAATTTGGGAATGGAGTGTTTTTCTTAAAATCTGTTTTTTTTTTTTGTTAATTTCTCTTTGTAATATGAATGAAGCATTTGTTGGTTCATTTGGCTCATTGAAGTAAGTTTTGGGTTTTAATTGCTCTTTTAAAGGTGTTTCAATTAAGAGTTGGATTTGAAAAGGATGTGCAAAAACAAGAAGCAATGTGGGAGAGGCAGCATGAGGTTGCAGCTGAGAAGATATATAATATGTGCTCTGACCTTGGTGGGTTCTTCCTAAAGGTATACTCTGTAACCAGCTTCCCATTTTCCGTTTCCTAATATAGAATTGATTCAAATCTCAAACCATTATCGTTGACTCGTTGTTTATTACAACTTCAAGTGGAGTGTGAAGAGGGTAGGATGTAGGCAGACCTTATCCCTTCGTTTTAGGTTTGTTTCCGATAGAGCCTTAATTCAAAAGGAAGTAATCAGAAAGCGTAAAAGAAAGAAATAGAATTCATGGTAGCTACGACCCAAACAAGCTGTTAAGTGTTAATGGTCCTTTGTTGTTTATTAACTCTACAAGGAAAAAGATTTCTGCATTTAGTGTTCCCTTTTAATAAATTTAATTAAGTTTATGCAGTTATATTGGGATATGTGCACTAGTCTGTGCTGGCTGCAGCATGCACTGCTGTGCTCTATTCATCATTATGCTCATGAGATTGTTGTATTGCTTCCACGTTACAGAGTTCCCTGAGGGTTGCTTCCATATTTTAACCCCAGGGATTTGGTCTAGTGGTAAGAGGTGTGGCGGACCCGTGATGTGTGATTTAGGTGCACGTCATGGGTACCCTGTTGCAAGCAATTCCTGGTATGTAAATGGAAAGGGGTAGAGGGGAGGACTCATAATCCACTGAGTTTCGAACCATGGACCATTAGCTCTTGGGAATTTCTCTGTTATTAGATAAAAGAATGGTCAAGAGGGTTTATATTTGGGCTTCACAACTCATAATTCATCTTAAGATCTAATTATGTGGATGGTGATGGTAATATTATTATTAATATTAGGTTGCTCAACTAATTGGGAAACCGGACTTGGCCCCTGCTGCATGGGTGAGAAGGTTAGTTACTCTATGTGATCAAGCGCCTGCTACACCGTACAATGTGGTCAGGGCTGTGCTGGAGAAGGAATTAAATCAGAATGTTGATGAATTGTTTGAAAGTTTTGATTTCGATCCTCTCGGTTCTGCTTCTATTGCACAGGTAACTGTTAAGCTTGATTTAAAGCATTACTAAAGCTCATTTTAGAGCGACAAAAATTTCTTCAAGCATTGACTAGAAACTTCATGTTAATCAAACAGTTGTTAAAAATATTGACCTTGCAGATAGTAAATACATTTAGATTTGTTGAAGTGTGTGACTATCATATCTAAAAGTCTAAGTTATTACAGGGGTGACACATTTATTTAGTATGTTAGGTTGCAAATTTTTCACTCGAATTAGGACCAACTCTTTTTTCTTGGGCTTTTACCTGGAAGTTAATTTCCACTAATAGGTTGTGGAACACAGTAGGCACGTAATAGACACAACAGCACCCTAATTCCAGCAATAATAGCAAAAACATTGCCACTTACATGTTAGGCAAGGGAAACTGCCTAAGAAGATACACCAAACAAGTTTTTCAATCTTTGCTGTGGCTGATATATTATAATGTCTAACAATCTCTAGTATATTCTTAATTTTTATGGTTTATGTAGGGCCTTAGCCCTATCCCAACAACAACAGTAGCTTTTGTTTGCAATGAAGAATATATATTTCAAAAGGATTTTTTTGTATATTTTACATTTTGCATTGTATGGAAATGTGGCTCCTTTCATGAGTCCTTTTTGTTAAATGCAAAATTTGTTCATAGCTAACATGCAAGTGACGACAAGTACATCCATGATCATGACTCATGATGATGAAGATGTGAAATATACCAATAAAAAAATGAATAATGAGCCATTTTCAAATCTTTATATAGGTATAACATGCCACAAAATATATGCTAGAACTTCTTTTCAACAAGTAGACTGTGCACTGATACTTTCTTTCTTTTCCTAGTTAGCTGATTTCCTTAATCAAGTTTTGTTGTTCTTGCTCCTTCTAACAAGATGGAGGTTTATTTGATCTGAGGAAACTTTCAGCTGAAATAGTTTCTTAGGACATCGTCTAGCACTAAGCTTTGTGTATATCTGTTCACAAATGAATAAATATTCATTTTCTATTGTTCTCCTTACTTCTCAACAGCTTTAACCTTAAAACAGTGTGATACATGGCTTTGAAGGCCAAACCTGTTAGGCAGTTTAAAGTCAGATAAATAATTATTTCTAAATGTCATATCTTTGAGCTGTATTCTAGTTATACAGAGGAATTAATATTACTTTGATCCTAAGTGGTTCAACTTGTGTTTACTTTACTTGGAATTAGGTTCACAGAGCGAGACTCATAGGTGACAAAAGAGATGTTGTTGTCAAGGTAAGAAAAATTGACTCATAACTTTGCAGATTGTTGTGATCATAAGGTTCTAAAGTAGTTGTCTTCTCTAGGTACAACACCCTGGGGTCCAACAGCTGATGATGACCGATATCCACAATTTGCAAGCTTTTGCACTATACTTG</genome_strand>
        <mrna_strand>TTTTCAAGAAAAGGTATCTGCTTGTTTCAGACGGTGGCAGCGTTCTTTCCAGTTTTGGGTTCGTGCAGTAGATATATATACTGGTTATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTCAATTAAGAGTTGGATTTGAAAAGGATGTGCAAAAACAAGAAGCAATGTGGGAGAGGCAGCATGAGGTTGCAGCTGAGAAGATATATAATATGTGCTCTGACCTTGGTGGGTTCTTCCTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTCAACTAATTGGGAAACCGGACTTGGCCCCTGCTGCATGGGTGAGAAGGTTAGTTACTCTATGTGATCAAGCGCCTGCTACACCGTACAATGTGGTCAGGGCTGTGCTGGAGAAGGAATTAAATCAGAATGTTGATGAATTGTTTGAAAGTTTTGATTTCGATCCTCTCGGTTCTGCTTCTATTGCACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACAGAGCGAGACTCATAGGTGACAAAAGAGATGTTGTTGTCAAG.......................................................................GTACAACACCCTGNGGTCCAACAGCTGATGATGACCGATATCCACAATTTGCAAGCTTTTGCACTATACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E468549" ref_strand="+" ref_description="SGN-E468549 [cSTB-5-K11]">
      <seq>aaattattaggcataaaaatggtttctttaaccttatagaggctacaatagaatttacagagaaacaatgagtgttcaatctgattttcaagaaaaggtatctgcttgtttcagaccttggcaacgttctttccagttttgggttcgtgcagtagatatatatactggttataaggtgtttcaattaagagttggctttgaaaagaatgtgcaaaaaaaagaagcaatgtgggagaggcagcatgaggttgcagctgagaagatatataatatgtgctctgaccttggtgggttcttcctaaaggttgctcaactaattgggaagccagacttggcccctgctgcatgggtgagaaggttagttactctatgtgatcaagcgcctgctacaccgtacaatgtgatcagggctgtgctggagaaggaattggatcagaatcttgatgaattgtttgaaagtttcgatgtcgatcctctcggttctgcttctattgcacaggtggcattgtatggaaatgtggctccttgcatgaatcctttttgttaagtgcaaaatttgttcatagctaacatgcaagtgatgacaagtacaaccatgatcatgactcatgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="35042" stop="31834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34742" g_stop="34568" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34567" i_stop="33926" i_length="642">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33925" g_stop="33797" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="304" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33796" i_stop="33029" i_length="768">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33028" g_stop="32834" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="499" r_length="195" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32833" i_stop="32252" i_length="582">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32251" g_stop="32134" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="617" r_length="118" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E468549" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34742" e_stop="34568"/>
          <exon e_start="33925" e_stop="33797"/>
          <exon e_start="33028" e_stop="32834"/>
          <exon e_start="32251" e_stop="32134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATAAGGTGTAAAAATGGTGTCTTTAACCTTATTGAGGCTACGATAGAGTTTACAGAGAAACAATGAGTGTTCAATCTGATTTTCAAGAAAAGGTATCTGCTTGTTTCAGACCTTGGCAACGTTCTTTCCAGTTTTGGGTTCGTGCAGTAGATATATATACTGGTTATAAGGTACCCTTTTTCATTTTTTTTTTCTCAAGTTTTGATTTTGTTAGTGGAACTGATTCATTTTTAATGTGATATCTTATCTTATCCCATTTTTCCCAAATATTAGTGAACAGTGGCACTGAATTGAGTTCTATTTTCTCATTTCCATTTTCCCATATTAATTTAACTTTTGAGGATGCACATCTACATACGTCAACTCGTGTCCATTGTATCAGTTGAGCAATCACAATTACAAGATAATCATCCAGACACTTGTAAAATTTTGTGGCATGTTAGTGTCGGATATCCATGGGACACAGGAGAGATGAGTTGATAGTTGAAACCAAAGTTGAGGTGTCTAGATATGTTCATTTGTCAACCAAGGTCAAGTTTAAGTGTTTGTTTATGTATTATGCCTAAATTTTTTTATAATTTGAAGAATTTAGGATATATATACAAAATGATTTTAAATTCTACAAATTAGTTGGTCTAATTTTACAGTTGTTACCTCTATGATTAATGTAGAAGAGTGAATTTGGGAATGGAGTGTTTTTCTTAAAATCTGTTTTTTTTTTTTGTTAATTTCTCTTTGTAATATGAATGAAGCATTTGTTGGTTCATTTGGCTCATTGAAGTAAGTTTTGGGTTTTAATTGCTCTTTTAAAGGTGTTTCAATTAAGAGTTGGATTTGAAAAGGATGTGCAAAAACAAGAAGCAATGTGGGAGAGGCAGCATGAGGTTGCAGCTGAGAAGATATATAATATGTGCTCTGACCTTGGTGGGTTCTTCCTAAAGGTATACTCTGTAACCAGCTTCCCATTTTCCGTTTCCTAATATAGAATTGATTCAAATCTCAAACCATTATCGTTGACTCGTTGTTTATTACAACTTCAAGTGGAGTGTGAAGAGGGTAGGATGTAGGCAGACCTTATCCCTTCGTTTTAGGTTTGTTTCCGATAGAGCCTTAATTCAAAAGGAAGTAATCAGAAAGCGTAAAAGAAAGAAATAGAATTCATGGTAGCTACGACCCAAACAAGCTGTTAAGTGTTAATGGTCCTTTGTTGTTTATTAACTCTACAAGGAAAAAGATTTCTGCATTTAGTGTTCCCTTTTAATAAATTTAATTAAGTTTATGCAGTTATATTGGGATATGTGCACTAGTCTGTGCTGGCTGCAGCATGCACTGCTGTGCTCTATTCATCATTATGCTCATGAGATTGTTGTATTGCTTCCACGTTACAGAGTTCCCTGAGGGTTGCTTCCATATTTTAACCCCAGGGATTTGGTCTAGTGGTAAGAGGTGTGGCGGACCCGTGATGTGTGATTTAGGTGCACGTCATGGGTACCCTGTTGCAAGCAATTCCTGGTATGTAAATGGAAAGGGGTAGAGGGGAGGACTCATAATCCACTGAGTTTCGAACCATGGACCATTAGCTCTTGGGAATTTCTCTGTTATTAGATAAAAGAATGGTCAAGAGGGTTTATATTTGGGCTTCACAACTCATAATTCATCTTAAGATCTAATTATGTGGATGGTGATGGTAATATTATTATTAATATTAGGTTGCTCAACTAATTGGGAAACCGGACTTGGCCCCTGCTGCATGGGTGAGAAGGTTAGTTACTCTATGTGATCAAGCGCCTGCTACACCGTACAATGTGGTCAGGGCTGTGCTGGAGAAGGAATTAAATCAGAATGTTGATGAATTGTTTGAAAGTTTTGATTTCGATCCTCTCGGTTCTGCTTCTATTGCACAGGTAACTGTTAAGCTTGATTTAAAGCATTACTAAAGCTCATTTTAGAGCGACAAAAATTTCTTCAAGCATTGACTAGAAACTTCATGTTAATCAAACAGTTGTTAAAAATATTGACCTTGCAGATAGTAAATACATTTAGATTTGTTGAAGTGTGTGACTATCATATCTAAAAGTCTAAGTTATTACAGGGGTGACACATTTATTTAGTATGTTAGGTTGCAAATTTTTCACTCGAATTAGGACCAACTCTTTTTTCTTGGGCTTTTACCTGGAAGTTAATTTCCACTAATAGGTTGTGGAACACAGTAGGCACGTAATAGACACAACAGCACCCTAATTCCAGCAATAATAGCAAAAACATTGCCACTTACATGTTAGGCAAGGGAAACTGCCTAAGAAGATACACCAAACAAGTTTTTCAATCTTTGCTGTGGCTGATATATTATAATGTCTAACAATCTCTAGTATATTCTTAATTTTTATGGTTTATGTAGGGCCTTAGCCCTATCCCAACAACAACAGTAGCTTTTGTTTGCAATGAAGAATATATATTTCAAAAGGATTTTTTTGTATATTTTACATTTTGCATTGTATGGAAATGTGGCTCCTTTCATGAGTCCTTTTTGTTAAATGCAAAATTTGTTCATAGCTAACATGCAAGTGACGACAAGTACATCCATGATCATGACTCATGATGATG</genome_strand>
        <mrna_strand>AAATTATTAGGCATAAAAATGGTTTCTTTAACCTTATAGAGGCTACAATAGAATTTACAGAGAAACAATGAGTGTTCAATCTGATTTTCAAGAAAAGGTATCTGCTTGTTTCAGACCTTGGCAACGTTCTTTCCAGTTTTGGGTTCGTGCAGTAGATATATATACTGGTTATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTCAATTAAGAGTTGGCTTTGAAAAGAATGTGCAAAAAAAAGAAGCAATGTGGGAGAGGCAGCATGAGGTTGCAGCTGAGAAGATATATAATATGTGCTCTGACCTTGGTGGGTTCTTCCTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTCAACTAATTGGGAAGCCAGACTTGGCCCCTGCTGCATGGGTGAGAAGGTTAGTTACTCTATGTGATCAAGCGCCTGCTACACCGTACAATGTGATCAGGGCTGTGCTGGAGAAGGAATTGGATCAGAATCTTGATGAATTGTTTGAAAGTTTCGATGTCGATCCTCTCGGTTCTGCTTCTATTGCACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTGTATGGAAATGTGGCTCCTTGCATGAATCCTTTTTGTTAAGTGCAAAATTTGTTCATAGCTAACATGCAAGTGATGACAAGTACAACCATGATCATGACTCATGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E312963" ref_strand="+" ref_description="SGN-E312963 [cTOA-14-B23]">
      <seq>aaatataaggtgtaaaaatggtgtgtttaaccttattgaggctacgatagagtttacagagaaacaatgagtgttcaatctgattttcaagaaaaggtatctgcttgtttcagaccttggcaacgttctttccagttttgggttcgtgcagtagatatatatactggttataaggtgtttcaattaagagttggatttgaaaaggatgtgcaaaaacaagaagcaatgtgggagaggcagcatgaggttgcagctgagaagatatataatatgtgctctgaccttggtgggttcttcctaaaggttgctcaactaattgggaaaccggacttggcccctgctgcatgggtgagaaggttagttactctatgtgatcaagcgcctgctacaccgtacaatgtggtcagggctgtgctggagaaggaattaaatcagaatgttgatgaattgtttgaaagttttgatttcgatcctctcggttctgcttctattgcacaggttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="35041" stop="32532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34741" g_stop="34568" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34567" i_stop="33926" i_length="642">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33925" g_stop="33797" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="303" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33796" i_stop="33029" i_length="768">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33028" g_stop="32834" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="498" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E312963" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34741" e_stop="34568"/>
          <exon e_start="33925" e_stop="33797"/>
          <exon e_start="33028" e_stop="32834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATAAGGTGTAAAAATGGTGTCTTTAACCTTATTGAGGCTACGATAGAGTTTACAGAGAAACAATGAGTGTTCAATCTGATTTTCAAGAAAAGGTATCTGCTTGTTTCAGACCTTGGCAACGTTCTTTCCAGTTTTGGGTTCGTGCAGTAGATATATATACTGGTTATAAGGTACCCTTTTTCATTTTTTTTTTCTCAAGTTTTGATTTTGTTAGTGGAACTGATTCATTTTTAATGTGATATCTTATCTTATCCCATTTTTCCCAAATATTAGTGAACAGTGGCACTGAATTGAGTTCTATTTTCTCATTTCCATTTTCCCATATTAATTTAACTTTTGAGGATGCACATCTACATACGTCAACTCGTGTCCATTGTATCAGTTGAGCAATCACAATTACAAGATAATCATCCAGACACTTGTAAAATTTTGTGGCATGTTAGTGTCGGATATCCATGGGACACAGGAGAGATGAGTTGATAGTTGAAACCAAAGTTGAGGTGTCTAGATATGTTCATTTGTCAACCAAGGTCAAGTTTAAGTGTTTGTTTATGTATTATGCCTAAATTTTTTTATAATTTGAAGAATTTAGGATATATATACAAAATGATTTTAAATTCTACAAATTAGTTGGTCTAATTTTACAGTTGTTACCTCTATGATTAATGTAGAAGAGTGAATTTGGGAATGGAGTGTTTTTCTTAAAATCTGTTTTTTTTTTTTGTTAATTTCTCTTTGTAATATGAATGAAGCATTTGTTGGTTCATTTGGCTCATTGAAGTAAGTTTTGGGTTTTAATTGCTCTTTTAAAGGTGTTTCAATTAAGAGTTGGATTTGAAAAGGATGTGCAAAAACAAGAAGCAATGTGGGAGAGGCAGCATGAGGTTGCAGCTGAGAAGATATATAATATGTGCTCTGACCTTGGTGGGTTCTTCCTAAAGGTATACTCTGTAACCAGCTTCCCATTTTCCGTTTCCTAATATAGAATTGATTCAAATCTCAAACCATTATCGTTGACTCGTTGTTTATTACAACTTCAAGTGGAGTGTGAAGAGGGTAGGATGTAGGCAGACCTTATCCCTTCGTTTTAGGTTTGTTTCCGATAGAGCCTTAATTCAAAAGGAAGTAATCAGAAAGCGTAAAAGAAAGAAATAGAATTCATGGTAGCTACGACCCAAACAAGCTGTTAAGTGTTAATGGTCCTTTGTTGTTTATTAACTCTACAAGGAAAAAGATTTCTGCATTTAGTGTTCCCTTTTAATAAATTTAATTAAGTTTATGCAGTTATATTGGGATATGTGCACTAGTCTGTGCTGGCTGCAGCATGCACTGCTGTGCTCTATTCATCATTATGCTCATGAGATTGTTGTATTGCTTCCACGTTACAGAGTTCCCTGAGGGTTGCTTCCATATTTTAACCCCAGGGATTTGGTCTAGTGGTAAGAGGTGTGGCGGACCCGTGATGTGTGATTTAGGTGCACGTCATGGGTACCCTGTTGCAAGCAATTCCTGGTATGTAAATGGAAAGGGGTAGAGGGGAGGACTCATAATCCACTGAGTTTCGAACCATGGACCATTAGCTCTTGGGAATTTCTCTGTTATTAGATAAAAGAATGGTCAAGAGGGTTTATATTTGGGCTTCACAACTCATAATTCATCTTAAGATCTAATTATGTGGATGGTGATGGTAATATTATTATTAATATTAGGTTGCTCAACTAATTGGGAAACCGGACTTGGCCCCTGCTGCATGGGTGAGAAGGTTAGTTACTCTATGTGATCAAGCGCCTGCTACACCGTACAATGTGGTCAGGGCTGTGCTGGAGAAGGAATTAAATCAGAATGTTGATGAATTGTTTGAAAGTTTTGATTTCGATCCTCTCGGTTCTGCTTCTATTGCACAG</genome_strand>
        <mrna_strand>AAATATAAGGTGTAAAAATGGTGTGTTTAACCTTATTGAGGCTACGATAGAGTTTACAGAGAAACAATGAGTGTTCAATCTGATTTTCAAGAAAAGGTATCTGCTTGTTTCAGACCTTGGCAACGTTCTTTCCAGTTTTGGGTTCGTGCAGTAGATATATATACTGGTTATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTCAATTAAGAGTTGGATTTGAAAAGGATGTGCAAAAACAAGAAGCAATGTGGGAGAGGCAGCATGAGGTTGCAGCTGAGAAGATATATAATATGTGCTCTGACCTTGGTGGGTTCTTCCTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTCAACTAATTGGGAAACCGGACTTGGCCCCTGCTGCATGGGTGAGAAGGTTAGTTACTCTATGTGATCAAGCGCCTGCTACACCGTACAATGTGGTCAGGGCTGTGCTGGAGAAGGAATTAAATCAGAATGTTGATGAATTGTTTGAAAGTTTTGATTTCGATCCTCTCGGTTCTGCTTCTATTGCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E315910" ref_strand="+" ref_description="SGN-E315910 [cTOA-26-B9]">
      <seq>aagaaaatcattactccttacaagttacaaatatttgagcaaccccattcaacaaattttaagaatagatattccagtaattttttccagccacaagaaaaaaaaaagagagtataatgggtgaatggctatcaatgccccttcaaatttcttgcaaaattgagctatggaggctgtctaaagaaaatataaggtgtaaaaatggcgtctttaaccttattgaggctacgatagagtttacagagaaacaatgagtgttcaatctgattttcaagaaaaggtatctgcttgtttcagaccttggcaacgttctttccagttttgggttcgtgcagtagatatatatactggttataaggtgtttcaattaagagttggatttgaaaaggatgtgcaaaaacaagaagcaatgtgggagaggcagcatgaggttgcagctgagaagatatataatatgtgctctgaccttggtgggttcttcctaaaggttgctcaactaattgggaaaccggacttggcccctgctgcatgggtgagaaggttagttactctatgtgatcaagcgcctgctacaccgtacaatgtggtcagggctgtgctggagaaggattaaatcagaatgttgatgaattgtttgaaagttttgatttcgatcctctcggttctgcttctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="35225" stop="32540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34925" g_stop="34568" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34567" i_stop="33926" i_length="642">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33925" g_stop="33797" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="487" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33796" i_stop="33029" i_length="768">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33028" g_stop="32840" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="675" r_length="188" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E315910" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34925" e_stop="34568"/>
          <exon e_start="33925" e_stop="33797"/>
          <exon e_start="33028" e_stop="32840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAATCATTACTCCTTACAAGTTACAAATATTTGAGCAACCCCATTCAACAAATTTTAAGAATAGATATTCCAGTAATTTTTTCCAGCCACAAGAAAAAAAAAAGAGAGTATAATGGGTGAATGGCTATCAATGCCCCTTCAAATTTCTTGCAAAATTGAGCTATGGAGGCTGTCTAAAGAAAATATAAGGTGTAAAAATGGTGTCTTTAACCTTATTGAGGCTACGATAGAGTTTACAGAGAAACAATGAGTGTTCAATCTGATTTTCAAGAAAAGGTATCTGCTTGTTTCAGACCTTGGCAACGTTCTTTCCAGTTTTGGGTTCGTGCAGTAGATATATATACTGGTTATAAGGTACCCTTTTTCATTTTTTTTTTCTCAAGTTTTGATTTTGTTAGTGGAACTGATTCATTTTTAATGTGATATCTTATCTTATCCCATTTTTCCCAAATATTAGTGAACAGTGGCACTGAATTGAGTTCTATTTTCTCATTTCCATTTTCCCATATTAATTTAACTTTTGAGGATGCACATCTACATACGTCAACTCGTGTCCATTGTATCAGTTGAGCAATCACAATTACAAGATAATCATCCAGACACTTGTAAAATTTTGTGGCATGTTAGTGTCGGATATCCATGGGACACAGGAGAGATGAGTTGATAGTTGAAACCAAAGTTGAGGTGTCTAGATATGTTCATTTGTCAACCAAGGTCAAGTTTAAGTGTTTGTTTATGTATTATGCCTAAATTTTTTTATAATTTGAAGAATTTAGGATATATATACAAAATGATTTTAAATTCTACAAATTAGTTGGTCTAATTTTACAGTTGTTACCTCTATGATTAATGTAGAAGAGTGAATTTGGGAATGGAGTGTTTTTCTTAAAATCTGTTTTTTTTTTTTGTTAATTTCTCTTTGTAATATGAATGAAGCATTTGTTGGTTCATTTGGCTCATTGAAGTAAGTTTTGGGTTTTAATTGCTCTTTTAAAGGTGTTTCAATTAAGAGTTGGATTTGAAAAGGATGTGCAAAAACAAGAAGCAATGTGGGAGAGGCAGCATGAGGTTGCAGCTGAGAAGATATATAATATGTGCTCTGACCTTGGTGGGTTCTTCCTAAAGGTATACTCTGTAACCAGCTTCCCATTTTCCGTTTCCTAATATAGAATTGATTCAAATCTCAAACCATTATCGTTGACTCGTTGTTTATTACAACTTCAAGTGGAGTGTGAAGAGGGTAGGATGTAGGCAGACCTTATCCCTTCGTTTTAGGTTTGTTTCCGATAGAGCCTTAATTCAAAAGGAAGTAATCAGAAAGCGTAAAAGAAAGAAATAGAATTCATGGTAGCTACGACCCAAACAAGCTGTTAAGTGTTAATGGTCCTTTGTTGTTTATTAACTCTACAAGGAAAAAGATTTCTGCATTTAGTGTTCCCTTTTAATAAATTTAATTAAGTTTATGCAGTTATATTGGGATATGTGCACTAGTCTGTGCTGGCTGCAGCATGCACTGCTGTGCTCTATTCATCATTATGCTCATGAGATTGTTGTATTGCTTCCACGTTACAGAGTTCCCTGAGGGTTGCTTCCATATTTTAACCCCAGGGATTTGGTCTAGTGGTAAGAGGTGTGGCGGACCCGTGATGTGTGATTTAGGTGCACGTCATGGGTACCCTGTTGCAAGCAATTCCTGGTATGTAAATGGAAAGGGGTAGAGGGGAGGACTCATAATCCACTGAGTTTCGAACCATGGACCATTAGCTCTTGGGAATTTCTCTGTTATTAGATAAAAGAATGGTCAAGAGGGTTTATATTTGGGCTTCACAACTCATAATTCATCTTAAGATCTAATTATGTGGATGGTGATGGTAATATTATTATTAATATTAGGTTGCTCAACTAATTGGGAAACCGGACTTGGCCCCTGCTGCATGGGTGAGAAGGTTAGTTACTCTATGTGATCAAGCGCCTGCTACACCGTACAATGTGGTCAGGGCTGTGCTGGAGAAGGAATTAAATCAGAATGTTGATGAATTGTTTGAAAGTTTTGATTTCGATCCTCTCGGTTCTGCTTCTATT</genome_strand>
        <mrna_strand>AAGAAAATCATTACTCCTTACAAGTTACAAATATTTGAGCAACCCCATTCAACAAATTTTAAGAATAGATATTCCAGTAATTTTTTCCAGCCACAAGAAAAAAAAAAGAGAGTATAATGGGTGAATGGCTATCAATGCCCCTTCAAATTTCTTGCAAAATTGAGCTATGGAGGCTGTCTAAAGAAAATATAAGGTGTAAAAATGGCGTCTTTAACCTTATTGAGGCTACGATAGAGTTTACAGAGAAACAATGAGTGTTCAATCTGATTTTCAAGAAAAGGTATCTGCTTGTTTCAGACCTTGGCAACGTTCTTTCCAGTTTTGGGTTCGTGCAGTAGATATATATACTGGTTATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTCAATTAAGAGTTGGATTTGAAAAGGATGTGCAAAAACAAGAAGCAATGTGGGAGAGGCAGCATGAGGTTGCAGCTGAGAAGATATATAATATGTGCTCTGACCTTGGTGGGTTCTTCCTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTCAACTAATTGGGAAACCGGACTTGGCCCCTGCTGCATGGGTGAGAAGGTTAGTTACTCTATGTGATCAAGCGCCTGCTACACCGTACAATGTGGTCAGGGCTGTGCTGGAGAAGG-ATTAAATCAGAATGTTGATGAATTGTTTGAAAGTTTTGATTTCGATCCTCTCGGTTCTGCTTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E475587" ref_strand="+" ref_description="SGN-E475587 [cSTB-41-E21]">
      <seq>gaaagttttaggcataaaaatggtttctttaaccttatagaggctacaatagaatttacagagaaacaatgagtgttcaatctgattttcaagaaaaggtgtctgcttgtttcagaccttggcaacgttctttccagttttgggttcgtgcagtagatatatatactggttataaagtgtttcaattaagatttggctttgaaaaggatgtgcaaaaacaaaaagcaatgtgggagatgcagcatgaggttgctgctgagaagatatataatatgtgctctgaccttggtgggttcttcctaaaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="35043" stop="33495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34743" g_stop="34568" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34567" i_stop="33926" i_length="642">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33925" g_stop="33797" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="305" r_length="129" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E475587" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34743" e_stop="34568"/>
          <exon e_start="33925" e_stop="33797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATATAAGGTGTAAAAATGGTGTCTTTAACCTTATTGAGGCTACGATAGAGTTTACAGAGAAACAATGAGTGTTCAATCTGATTTTCAAGAAAAGGTATCTGCTTGTTTCAGACCTTGGCAACGTTCTTTCCAGTTTTGGGTTCGTGCAGTAGATATATATACTGGTTATAAGGTACCCTTTTTCATTTTTTTTTTCTCAAGTTTTGATTTTGTTAGTGGAACTGATTCATTTTTAATGTGATATCTTATCTTATCCCATTTTTCCCAAATATTAGTGAACAGTGGCACTGAATTGAGTTCTATTTTCTCATTTCCATTTTCCCATATTAATTTAACTTTTGAGGATGCACATCTACATACGTCAACTCGTGTCCATTGTATCAGTTGAGCAATCACAATTACAAGATAATCATCCAGACACTTGTAAAATTTTGTGGCATGTTAGTGTCGGATATCCATGGGACACAGGAGAGATGAGTTGATAGTTGAAACCAAAGTTGAGGTGTCTAGATATGTTCATTTGTCAACCAAGGTCAAGTTTAAGTGTTTGTTTATGTATTATGCCTAAATTTTTTTATAATTTGAAGAATTTAGGATATATATACAAAATGATTTTAAATTCTACAAATTAGTTGGTCTAATTTTACAGTTGTTACCTCTATGATTAATGTAGAAGAGTGAATTTGGGAATGGAGTGTTTTTCTTAAAATCTGTTTTTTTTTTTTGTTAATTTCTCTTTGTAATATGAATGAAGCATTTGTTGGTTCATTTGGCTCATTGAAGTAAGTTTTGGGTTTTAATTGCTCTTTTAAAGGTGTTTCAATTAAGAGTTGGATTTGAAAAGGATGTGCAAAAACAAGAAGCAATGTGGGAGAGGCAGCATGAGGTTGCAGCTGAGAAGATATATAATATGTGCTCTGACCTTGGTGGGTTCTTCCTAAAG</genome_strand>
        <mrna_strand>GAAAGTTTTAGGCATAAAAATGGTTTCTTTAACCTTATAGAGGCTACAATAGAATTTACAGAGAAACAATGAGTGTTCAATCTGATTTTCAAGAAAAGGTGTCTGCTTGTTTCAGACCTTGGCAACGTTCTTTCCAGTTTTGGGTTCGTGCAGTAGATATATATACTGGTTATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTCAATTAAGATTTGGCTTTGAAAAGGATGTGCAAAAACAAAAAGCAATGTGGGAGATGCAGCATGAGGTTGCTGCTGAGAAGATATATAATATGTGCTCTGACCTTGGTGGGTTCTTCCTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E538071" ref_strand="+" ref_description="SGN-E538071 [TUS-56-P24]">
      <seq>attataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgagggttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcgaatcaatccacaacaggaaagtacacgaagaaaaatgtgttttttaagaagtaggaagatcagaaaattcgttagtaaatattctgaagactgaatggtatttataggcaagaataatatattctgaaaggttgcaactctttcagaattgagacaaccattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="41641" stop="40470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41341" g_stop="40770" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E538071" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41341" e_stop="40770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGATTGCAGACTTAAAAGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGATTTAAATAATTTCCTTAAGATCGTTGCCAATCTGTGTTATGAAAATCAGAAATTACTGATTGTAATAAATCATTCAGAAACACAAAGTAACTGAGATTTTTAGAACCGGTAAATAAGATGAACAGAAATTTATTTGTAAAAAATAATTGAATCTGTAAAACTTACCAGAATCTAGAATACTCTTTTTGATAATTTAGGAAGAAAATCAATTCCACTGAATTCACAGTGTCCCCTTAAAGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCGGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAACAGGAAAGTACACGAAGAAATATGTG-TTTTTAAGAAGAAGGAAGATCAGAAAATTCGTTTGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAAGAATATATTCTAAAAGGTTGCAACCCTTTCAGAATTGACATGACCATTAA</genome_strand>
        <mrna_strand>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGT-AAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGGTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAACAGGAAAGTACACGAAGAAAAATGTGTTTTTTAAGAAGTAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACTCTTTCAGAATTGAGACAACCATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E268499" ref_strand="+" ref_description="SGN-E268499 [cLEI-13-K15]">
      <seq>ttataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgaggtttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="41640" stop="40633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41340" g_stop="40933" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E268499" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41340" e_stop="40933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGATTGCAGACTTAAAAGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGATTTAAATAATTTCCTTAAGATCGTTGCCAATCTGTGTTATGAAAATCAGAAATTACTGATTGTAATAAATCATTCAGAAACACAAAGTAACTGAGATTTTTAGAACCGGTAAATAAGATGAACAGAAATTTATTTGTAAAAAATAATTGAATCTGTAAAACTTACCAGAATCTAGAATACTCTTTTTGATAATTTAGGAAGAAAATCAATTCCACTGAATTCACAGTGTCCCCTTAAAGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCGGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCG</genome_strand>
        <mrna_strand>TTATAATTGCAGACTTAAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGT-AAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E242172" ref_strand="+" ref_description="SGN-E242172 [cLED-37-C23]">
      <seq>gatagtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgtgattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcgcgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataattgtggcaaggctggtcatagatcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="+" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="41491" stop="42484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41791" g_stop="42184" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="+" ref_id="SGN-E242172" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41791" e_stop="42184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTAAAACTGTTGGGTCACAAGTGCAGGAACTTCAACTTATTCTCGATGATCTGATTGCTGAAGATATGGTAGTAAATG-AGCTTTTGAAGTGGCTGCAATGATCTAGAAGTTGCCTCCTTCGTGAAATGATTTCAACAATTATCTAAAGCACAAGCATAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAATTCAACAATCATTAGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCTAACGGGCAAAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATTTTCTGA</genome_strand>
        <mrna_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGTGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E242208" ref_strand="+" ref_description="SGN-E242208 [cLED-37-E10]">
      <seq>gtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgggattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcccgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="+" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="41495" stop="42456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41795" g_stop="42156" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="+" ref_id="SGN-E242208" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41795" e_stop="42156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAACTGTTGGGTCACAAGTGCAGGAACTTCAACTTATTCTCGATGATCTGATTGCTGAAGATATGGTAGTAAATG-AGCTTTTGAAGTGGCTGCAATGATCTAGAAGTTGCCTCCTTCGTGAAATGATTTCAACAATTATCTAAAGCACAAGCATAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAATTCAACAATCATTAGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCTAACGGGCAAAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATT</genome_strand>
        <mrna_strand>GTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGGGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCCCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E551179" ref_strand="+" ref_description="SGN-E551179 [TUS-55-K22]">
      <seq>aaactctactgtcagcgaatcaatccacagcaggaaagtacacgaagaaaaaatgtgtttattaataagtaggaatatcagaaaattcgttagtaaatattctgaagactgaatggtatttataaacaagaataatatattctgaaaggcaaccctttcagaattgacacaaccattaatgaaaggttgcaaactttcaaatggtattgactgttcctgaaagttgcaacctttcagaacagtggcgggaatttttaaaattatctctcgatcgatcatttgccaaagccgaagccgaagccgaagcgagcgagcgacgaccacgacggcgcgaggggggttcctctttccaacccttttaataattaataggagtgtttatttatttaaactctcttattttcatttccattaacgatgagggactattgccttttttattaaagcattagaggacttttcaagttcccaacctttcaagttctaaacttttcaaattcctctccttccctctatttcccatcaattcttgctacatacccaacagtaattgtttaatctttgttaagccactttttgtgttgaaattatttactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="46888" stop="45578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46588" g_stop="46330" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46329" i_stop="46169" i_length="161">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46168" g_stop="45880" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="546" r_length="288" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E551179" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46588" e_stop="46330"/>
          <exon e_start="46168" e_stop="45880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAG-AAATATGTGTTT-TTAAGAAGAAGGAAGATCAGAAAATTCGTTTGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAAGAATATATGCTGAAAGGTTGCAACCCTTTCAGAATTGACATGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGTAATTTTTAAATATAACGAAATTTAAAACGGGTCACGCGCGCGGATCCGAGTCGGGTCGGATTAACTTTGTTGAAAACATTTCGGTTAACTTCTGTTATCAACTAATTAATTGAAAATATTTTTGTCCATTTAATTAATTAAATAAATAAATAAAATAAATTTGTCCAAAAAATTATCTCTCGATCGATCATTTGCCAAAGCCAAAGCCGAAGCCGAAGCGAGCGAGCGAGCGATGACGACGGCGCGAGGGGGATCCCTCTTTCCAACCCTTTTAACAATTAATAGGAGTGTTTATTTATTTAAACTCTCCTATTTTCATTTCCATTACCGATGAGGGACTATTGCCTTTTTCATTAAAGCATAAGAGGACTTTTCAAGATCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACA</genome_strand>
        <mrna_strand>AAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAAAAATGTGTTTATTAATAAGTAGGAATATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAAACAAGAATAATATATTCTGAAA-G--GCAACCCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGGAATTTTTAA.................................................................................................................................................................AATTATCTCTCGATCGATCATTTGCCAAAGCCGAAGCCGAAGCCGAAGCGAGCGAGCGA-CGACCACGACGGCGCGAGGGGGGTTCCTCTTTCCAACCCTTTTAATAATTAATAGGAGTGTTTATTTATTTAAACTCTCTTATTTTCATTTCCATTAACGATGAGGGACTATTGCCTTTTTTATTAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E689001" ref_strand="+" ref_description="SGN-E689001 [t3_tus_55_K22]">
      <seq>aaactctactgtcagcgaatcaatccacagcaggaaagtacacgaagaaaaaatgtgtttattaataagtaggaatatcagaaaattcgttagtaaatattctgaagactgaatggtatttataaacaagaataatatattctgaaaggcaaccctttcagaattgacacaaccattaatgaaaggttgcaaactttcaaatggtattgactgttcctgaaagttgcaacctttcagaacagtggcgggaatttttaaaattatctctcgatcgatcatttgccaaagccgaagccgaagccgaagcgagcgagcgacgaccacgacggcgcgaggggggttcctctttccaacccttttaataattaataggagtgtttatttatttaaactctcttattttcatttccattaacgatgagggactattgccttttttattaaagcattagaggacttttcaagttcccaacctttcaagttctaaacttttcaaattcctctccttccctctatttcccatcaattcttgctacatacccaacagtaattgtttaatctttgttaagtcactttttgtgttgaaattatttactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="46888" stop="45578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46588" g_stop="46330" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46329" i_stop="46169" i_length="161">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46168" g_stop="45880" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="546" r_length="288" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E689001" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46588" e_stop="46330"/>
          <exon e_start="46168" e_stop="45880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAG-AAATATGTGTTT-TTAAGAAGAAGGAAGATCAGAAAATTCGTTTGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAAGAATATATGCTGAAAGGTTGCAACCCTTTCAGAATTGACATGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGTAATTTTTAAATATAACGAAATTTAAAACGGGTCACGCGCGCGGATCCGAGTCGGGTCGGATTAACTTTGTTGAAAACATTTCGGTTAACTTCTGTTATCAACTAATTAATTGAAAATATTTTTGTCCATTTAATTAATTAAATAAATAAATAAAATAAATTTGTCCAAAAAATTATCTCTCGATCGATCATTTGCCAAAGCCAAAGCCGAAGCCGAAGCGAGCGAGCGAGCGATGACGACGGCGCGAGGGGGATCCCTCTTTCCAACCCTTTTAACAATTAATAGGAGTGTTTATTTATTTAAACTCTCCTATTTTCATTTCCATTACCGATGAGGGACTATTGCCTTTTTCATTAAAGCATAAGAGGACTTTTCAAGATCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACA</genome_strand>
        <mrna_strand>AAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAAAAATGTGTTTATTAATAAGTAGGAATATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAAACAAGAATAATATATTCTGAAA-G--GCAACCCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGGAATTTTTAA.................................................................................................................................................................AATTATCTCTCGATCGATCATTTGCCAAAGCCGAAGCCGAAGCCGAAGCGAGCGAGCGA-CGACCACGACGGCGCGAGGGGGGTTCCTCTTTCCAACCCTTTTAATAATTAATAGGAGTGTTTATTTATTTAAACTCTCTTATTTTCATTTCCATTAACGATGAGGGACTATTGCCTTTTTTATTAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E538064" ref_strand="+" ref_description="SGN-E538064 [TUS-56-P20]">
      <seq>attataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgaggtttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcgaatcaatccacaacaggaaagtacacgaagaaaaatgtgttttttaagaagtaggaagatcagaaaattcgttagtaaatattctgaagactgaatggtatttataggcaagaataatatattctgaaaggttgcaactctttcagaattgacacaaccattaatgaaaggttgcaaactttcaaatggtattgactgttcctgaaagttgcaacctttcagaacagtggcgggaatttttaaatataacggaatttaaaacgggtcacgcgcgcggatccgagtcgggtcgggttaactaaaaagttgaaaacaattcggttaatttctgttatcaactgattaattgaaaataatttttggccatttaannttattaataaataattaaaataatttgtccaaaaaatatctctcgatcatttgccaagtcgaagccgagcgagcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="47196" stop="45851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46903" g_stop="46118" g_length="786"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="857" r_length="779" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E538064" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46903" e_stop="46118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTGTTGTTGTCAATCTGTGTTATGAAAATCAGAAATTACTGATTGTAATAAATCATTCAGAAACACAAAGTAACTGAAATTTTTAGAACCAATAAATAAGATGAACAGAAATTTATTTGTAAAAAATAATTGAATCTGTAAAACTTACCAGAATCTGGGATACTCTTTTTGATAATGTAGGAATAAAAATCAAGTCCACTGAATTCACAATGTCCCCTTAAGGAAATTGTTTCCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCGGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAATATGTG-TTTTTAAGAAGAAGGAAGATCAGAAAATTCGTTTGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAAGAATATATGCTGAAAGGTTGCAACCCTTTCAGAATTGACATGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGTAATTTTTAAATATAACGAAATTTAAAACGGGTCACGCGCGCGGATCCGAGTCGGGTCGGATTAACT---TTGTTGAAAACATTTCGGTTAACTTCTGTTATCAACTAATTAATTGAAAAT-ATTTTTGTCCATTTAATTAATTAAATAAATAAATAAAATAAATTTGTCCAAAAAATTATCTCTCGATCGATCATTTGCCAAAGCCAAAGCCGAAGCCGAAGCGA</genome_strand>
        <mrna_strand>CTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGT-AAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAA-AAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAACAGGAAAGTACACGAAGAAAAATGTGTTTTTTAAGAAGTAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACTCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGGAATTTTTAAATATAACGGAATTTAAAACGGGTCACGCGCGCGGATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAACAATTCGGTTAATTTCTGTTATCAACTGATTAATTGAAAATAATTTTTGGCCATTTAANNTTATTAATAAATAATTAAAAT-AATTTGTCCAAAAAA-TA--TCTC--TCGATCATTTGCC-AAGTCGAAGCCG-AG-CG-AGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E352720" ref_strand="+" ref_description="SGN-E352720 [cTOS-11-J17]">
      <seq>aggcttttggggtgtctgaggatttcatcgacttggaactatctcggttcattgcagctgggaagttgcattgcaagattgataaagtagcaggagtattggaaactaatcgtcctgatgcaaagaatgctctttatcaggcaactatcaagcaaggggacttcttgttgaatcgcattcaaaagctttctcgtgtcattgatctctgaagccgttaaaccgtgcgttatacttgttttctcttcaactctctgtagctctaatattgatatattctgccttttcatattgaactcttgggggagtattattttagtaattttctgaaatcaaagagattttctgtgttgggatagctcttatatttggacaagcattgcatcttttgaaatgttacttcctatttaagtttgtgctcannnnanaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="62751" stop="61645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62451" g_stop="62418" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62417" i_stop="62330" i_length="88">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62329" g_stop="61939" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="425" r_length="391" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="426" polyA_stop="441"/>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E352720" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62451" e_stop="62418"/>
          <exon e_start="62329" e_stop="61939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTTTTGGGGTGTCTGAGGATTTCATCGACTTGTGAGTGCTTCTATTTCATGCTTAGATAATGGACTGTGTATTCACTATAAAACGTGTAACATAATTGAACTTTTCTGTTTTACTTCAGGGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGATTTTCTGTGTTGGGATAGCTCTTATATTTGGACAAGCATTGCATCTTTTGAAATGTTACTTCCTATTTAAGTTTGTGCTCAGCTGAT</genome_strand>
        <mrna_strand>AGGCTTTTGGGGTGTCTGAGGATTTCATCGACTT........................................................................................GGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGATTTTCTGTGTTGGGATAGCTCTTATATTTGGACAAGCATTGCATCTTTTGAAATGTTACTTCCTATTTAAGTTTGTGCTCANNNNAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E279665" ref_strand="+" ref_description="SGN-E279665 [cLER-5-I8]">
      <seq>tatacttgttttctcttcaactctctgtagctctaatattgatatattctgccttttcatattgaactcttgggggagtattattttagtaattttctgaaatcaaagagattttctgtgttgggatagctcttatatttggacaagcattgcatcttttgaaatgttacttcctatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="62436" stop="61656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62136" g_stop="61956" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E279665" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>181</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62136" e_stop="61956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGATTTTCTGTGTTGGGATAGCTCTTATATTTGGACAAGCATTGCATCTTTTGAAATGTTACTTCCTATTTAA</genome_strand>
        <mrna_strand>TATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGATTTTCTGTGTTGGGATAGCTCTTATATTTGGACAAGCATTGCATCTTTTGAAATGTTACTTCCTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E615384" ref_strand="+" ref_description="SGN-E615384 [65182]">
      <seq>atcttttccttgattctatctctacttttaccacatatgagcttttcccctatgatactttcatattttatactgtccttacgagcataattaccttggaccgggtttctttgaaacaaaaggtcgtggatgcaccagagatcttgacagtaattggaaagattccatatctgtctgagtttatgaactcgctatatgagtgtcagtacaagtcatttttctcagcatttgctggcttgatggagcatattaaattggatcgttacttgcaaccacacttcagatattatatgagggaggtcagaacagttgtgtattcccagttcctggagtcctacaagagtgttactattgaggccatggccaaggcatttggggtgtctgaggatttcatcgacttggaactatctcgattcattgcagctgggaagttgcattgcaagatcgataaagtagcaggagtgttggaaactaatcgtcctgatgcaaagaatgctctttatcaggcaactatcaagcaaggggacttcttgttgaatcgcattcaaaagctttctcgtgtcattgatctctgaagccattaaactgtggcgttgtacttgttttcttcaactgtctgtagcactaatattgatatattttgccttttcattttgagctcttgggagtacaatttagtaattttctgaaatcaagagatttctgtgtgggatagctcttatatttggacaaacattgcatcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="64247" stop="61676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63947" g_stop="63826" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63825" i_stop="63682" i_length="144">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63681" g_stop="63573" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="231" r_length="109" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63572" i_stop="62587" i_length="986">
            <donor d_prob="0.874" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62586" g_stop="62418" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="400" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62417" i_stop="62330" i_length="88">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62329" g_stop="61976" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="747" r_length="347" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E615384" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63947" e_stop="63826"/>
          <exon e_start="63681" e_stop="63573"/>
          <exon e_start="62586" e_stop="62418"/>
          <exon e_start="62329" e_stop="61976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAAAAGGTAGTCAATATGTACTCCCTCTAATATCCTTGTTTGCTGTATGAGGAATTTTCTAACTTCAAAATTTGTGTTCCCTTGGAATATCTGGGATGTTACTGTGATGAATGTACTTGCAAATTCATTTTTATCACGTATATGTTGCAGGTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTGGTAAGCTTTTCCATTGATAATTTTTTCTTTTCGTATGTGAAGTGTGTCTTCGTAGTTTGCAAAGGTCTGCACACAAAAGTGTATGTAGATTATGTCTGATGGGGGTCCCTGATGCATTTTCTTGAGAATTTGATTGAGAATAGTGGTATTTGGCTATTTGCAAGGGCTTGATTACTGATAATCCAGTTTGGAGGTTTTGATTCTCAGATGACAGTGTTTCCTTTTTGGAGTAACTTGATAGTGAAATAGGTTACCACTGTTGTATAGAAACGTACCCCCTTTTCTTGTCTGAAAGTCTTTTGAATATCAGCACGAATGTATGGGGTCTTAGTGCTCTTTATTAGTCATGCAAGTAGTTTGCTTGATTGGACTAAAGGGATGTTCTTTCTGGCACATATTAAAACAGTAAAAAAGATGCTATTTCCGCTCCTGAAACTTGAAACTTTTCGAATGGATAATAGTTCTTTTCCAATTGCATAGAAAGTAATATCTCGTCATCTTTGTTAAGTTTGACAGGGAGTTTGTTTGGGTTAGGAGTTGGGGTAGGTGGGTGGACTTGTAATTCTCATTGCAGTTAGTCTTAGCTTGCATAGTCTGCTCACTTCTCTTTGTAATAATAGCTAATAAATCTTACATTGAGTTCTCTTCAGAGAACTAACTCAAATTTGTAGGGCAGTTACATTCACTTGAATTTCCCAACTGATTATTGGAGATGGGGGCAATGAGAGACCAATTGACCTTTGCGCACACACAAAAAAGATTGATACCTTTATAAAAAAAATTGACAAACCTAAATGTGTGTTTATAGACAGGCGTTAAAATGTGATCTGTAAGTATCGAGTTACAGGAGAGATAAACATGCTATATCTGTCATATACTCGTGATTTGTGATTTACCTATATGTTGATTGCTAGGGCCATGTATGTGGGCCATGAAATGATATATCAGTTGCAGAATGGTTGAATTTTACCTTAATGTGTTTTCAGCTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTTGTGAGTGCTTCTATTTCATGCTTAGATAATGGACTGTGTATTCACTATAAAACGTGTAACATAATTGAACTTTTCTGTTTTACTTCAGGGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGT-GCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGATTTTCTGTGTTGGGATAGCTCTTATATTTGGACAAGCATTGCATCTTTTG</genome_strand>
        <mrna_strand>ATCTTTTCCTTGATTCTATCTCTACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATAATTACCTTGGACCGGGTTTCTTTGAAACAAAAG................................................................................................................................................GTCGTGGATGCACCAGAGATCTTGACAGTAATTGGAAAGATTCCATATCTGTCTGAGTTTATGAACTCGCTATATGAGTGTCAGTACAAGTCATTTTTCTCAGCATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCATTTGGGGTGTCTGAGGATTTCATCGACTT........................................................................................GGAACTATCTCGATTCATTGCAGCTGGGAAGTTGCATTGCAAGATCGATAAAGTAGCAGGAGTGTTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCATTAAACTGTGGCGTTGTACTTG-TTT-TCTTCAACTGTCTGTAGCACTAATATTGATATATTTTGCCTTTTCATTTTGAGCTCTT--GGGAGTA-CAATTTAGTAATTTTCTGAAATC-AAGAGA-TTTCTGTG-TGGGATAGCTCTTATATTTGGACAAACATTGCATCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E288169" ref_strand="+" ref_description="SGN-E288169 [cLES-7-J15]">
      <seq>tgtctgaggattcatcgactcggaactatctcggttcattgcagctgggaagttgcattgcaagattgataaagtagcaggagtattggaaactaatcgtcctgatgcaaagaatgctctttatcaggcaactatcaagcaaggggacttcttgttgaatcgcattcaaaagctttctcgtgtcattgatctctgaagccgttaaaccgtgcgttatacttgttttctcttcaactctctgtagctctaatattgatatattctgccttttcatattgaactcttgggggagtattattttagtaattttctgaaatcaaagagattttctgtgttgggataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="62641" stop="61709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62439" g_stop="62418" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62417" i_stop="62330" i_length="88">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62329" g_stop="62002" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="349" r_length="328" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E288169" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62439" e_stop="62418"/>
          <exon e_start="62329" e_stop="62002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTGAGGATTTCATCGACTTGTGAGTGCTTCTATTTCATGCTTAGATAATGGACTGTGTATTCACTATAAAACGTGTAACATAATTGAACTTTTCTGTTTTACTTCAGGGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGATTTTCTGTGTTGGGATAGCTCTTA</genome_strand>
        <mrna_strand>TGTCTGAGGA-TTCATCGACTC........................................................................................GGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGATTTTCTGTGTTGGGATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E714689" ref_strand="+" ref_description="SGN-E714689 [FB12AF06]">
      <seq>cttgcaaccacacttcagatattatatgagggaggtcagaacagttgtgtattcccagttcctggagtcctacaagagtgttactattgaggccatggccaaggcttttggggtgtctgaggatttcatcgacttggaactatctcggttcattgcagctgggaagttgcattgcaagattgataaagtagcaggagtattggaaactaatcgtcctgatgcaaagaatgctctttatcaggcaactatcaagcaaggggacttcttgttgaatcgcattcaaaagctttctcgtgtcattgatctctgaagccgttaaaccgtgcgttatacttgttttctcttcaactctctgtagctctaatattgatatattctgccttttcatattgaactcttgggggagtattattttagtaattttctgaaatcaaagagattttctgtgttgggataaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="62852" stop="61709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62552" g_stop="62418" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62417" i_stop="62330" i_length="88">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62329" g_stop="62009" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="456" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="457" polyA_stop="470"/>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E714689" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62552" e_stop="62418"/>
          <exon e_start="62329" e_stop="62009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTTGTGAGTGCTTCTATTTCATGCTTAGATAATGGACTGTGTATTCACTATAAAACGTGTAACATAATTGAACTTTTCTGTTTTACTTCAGGGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGATTTTCTGTGTTGGGATA</genome_strand>
        <mrna_strand>CTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTT........................................................................................GGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGATTTTCTGTGTTGGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E240656" ref_strand="+" ref_description="SGN-E240656 [cLED-21-C23]">
      <seq>ataaagtagcaggagtattggaaactaatcgtcctgatgcaaagaatgctctttatcaggcaactatcaagcaaggggacttcttgttgaatcgcattcaaaagctttctcgtgtcattgatctctgaagccgttaaaccgtgcgttatacttgttttctcttcaactctctgtagctctaatattgatatattctgccttttcatattgaactcttgggggagtattattttagtaattttctgaaatcaaagagattttctgtgttgggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="62582" stop="61709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62282" g_stop="62009" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E240656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62282" e_stop="62009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGATTTTCTGTGTTGGGATA</genome_strand>
        <mrna_strand>ATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGATTTTCTGTGTTGGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E240594" ref_strand="+" ref_description="SGN-E240594 [cLED-21-D23]">
      <seq>attgataaagtagcaggagtattggaaactaatcgtcnnnncgcaaagaatgctctttatcaggcaactatcaagcaaggggacttcttgttgaatcgcattcaaaagctttctcgtgtcattgatctctgaagccgttaaaccgtgcgttatacttgttttctcttcaactctctgtagctctaatattgatatattctgccttttcatattgaactcttgggggagtattattttagtaattttctgaaatcaaagagattttctgtgttgggatgaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="62586" stop="61710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62286" g_stop="62012" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="279" polyA_stop="292"/>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E240594" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62286" e_stop="62012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGATTTTCTGTGTTGGG</genome_strand>
        <mrna_strand>ATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCNNNNCGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGATTTTCTGTGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E240599" ref_strand="+" ref_description="SGN-E240599 [cLED-21-F23]">
      <seq>ataaagtagcaggagtattggaaactaatcgtccngnaagatgaatgctctttatcaggcaactatcaagcaaggggacttcttgttgaatcgcattcaaaagctttctcgtgtcattgatctctgaagccgttaaaccgtgcgttatacttgttttctcttcaactctctgtagctctaatattgatatattctgccttttcatattgaactcttgggggagtattattttagtaattttctgaaatcaaagagattttctgtgttgggattaaaaaaaaaaaaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="62582" stop="61710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62282" g_stop="62012" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="274" polyA_stop="292"/>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E240599" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62282" e_stop="62012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGATTTTCTGTGTTGGG</genome_strand>
        <mrna_strand>ATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCNG-NAAGATGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGATTTTCTGTGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E745526" ref_strand="+" ref_description="SGN-E745526 [GI|47105928]">
      <seq>cagcacacaaactattccttttgacacatccagatgtcaatgacttggataaagttcgtcttcgtgaagaagtcttggaagctgtggtctccaatgatatggctccgttgtttgaaaccctagtttcaaaaggggtttttagtttgaatctggaggttcttgatcctatgcgtgttaagaacgctgatgagcttaaaaaactcgatgagaagattgctgatgcagaagaaaatcttggtgaaagtgaagttcgagaagctcatttggctaaatcattgttctacattagaattggtgacaaggggaaagcacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctagtgttctataccttgcagatgggattatttgacttggattttgacctcatctctaaatgcatagataaggcaaagaaattattcgaaaaggggggtgactgggagagaaagaacaggttgaaggtgtatgaagggttgttctgcatgtccactcgtaacttcaagaaagcagcagatcttttccttgattctatctcaacttttaccacatatgagcttttcccctatgatactttcatattttatactgtccttacgagcatcattaccttggaccgggtttccttgaaacaaaaggtcgtggatgcgccagagatcttgactgtaattggaaagattccatatctgtccgagtttatgaactcgttatatgattgtcaatacaagtcatttttctcagcatttgctggcttgatggagcatattaaattggatcgttacttgcaaccacacttcagatattatatgagggaggtcagaacagttgtgtattcccagttcctggagtcctacaagagtgttactattgaggccatggccaaggcttttggggtgtctgaggatttcatcgacttggaactatctcggttcattgcagctgggaagttgcattgcaagattgataaagtagcaggagtattggaaactaatcgtcctgatgcaaagaatgctctttatcaggcaactatcaagcaaggggacttcttgttgaatcgcattcaaaagctttctcgtgtcattgatctctgaagccgttaaaccgtgcgttatacttgttttctcttcaactctctgtagctctaatattgatatattctgccttttcatattgaactcttgggggagtattattttagtaattttctgaaatcaaagagattttctgtgtaacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68196" stop="61716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67898" g_stop="67803" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="211" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="302" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64148" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="448" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64045" g_stop="63826" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="668" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63825" i_stop="63682" i_length="144">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63681" g_stop="63573" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="777" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63572" i_stop="62587" i_length="986">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62586" g_stop="62418" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="946" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62417" i_stop="62330" i_length="88">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62329" g_stop="62018" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="947" r_stop="1258" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1261" polyA_stop="1278"/>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E745526" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1258</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67898" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64148"/>
          <exon e_start="64045" e_stop="63826"/>
          <exon e_start="63681" e_stop="63573"/>
          <exon e_start="62586" e_stop="62418"/>
          <exon e_start="62329" e_stop="62018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAAAAGGTAGTCAATATGTACTCCCTCTAATATCCTTGTTTGCTGTATGAGGAATTTTCTAACTTCAAAATTTGTGTTCCCTTGGAATATCTGGGATGTTACTGTGATGAATGTACTTGCAAATTCATTTTTATCACGTATATGTTGCAGGTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTGGTAAGCTTTTCCATTGATAATTTTTTCTTTTCGTATGTGAAGTGTGTCTTCGTAGTTTGCAAAGGTCTGCACACAAAAGTGTATGTAGATTATGTCTGATGGGGGTCCCTGATGCATTTTCTTGAGAATTTGATTGAGAATAGTGGTATTTGGCTATTTGCAAGGGCTTGATTACTGATAATCCAGTTTGGAGGTTTTGATTCTCAGATGACAGTGTTTCCTTTTTGGAGTAACTTGATAGTGAAATAGGTTACCACTGTTGTATAGAAACGTACCCCCTTTTCTTGTCTGAAAGTCTTTTGAATATCAGCACGAATGTATGGGGTCTTAGTGCTCTTTATTAGTCATGCAAGTAGTTTGCTTGATTGGACTAAAGGGATGTTCTTTCTGGCACATATTAAAACAGTAAAAAAGATGCTATTTCCGCTCCTGAAACTTGAAACTTTTCGAATGGATAATAGTTCTTTTCCAATTGCATAGAAAGTAATATCTCGTCATCTTTGTTAAGTTTGACAGGGAGTTTGTTTGGGTTAGGAGTTGGGGTAGGTGGGTGGACTTGTAATTCTCATTGCAGTTAGTCTTAGCTTGCATAGTCTGCTCACTTCTCTTTGTAATAATAGCTAATAAATCTTACATTGAGTTCTCTTCAGAGAACTAACTCAAATTTGTAGGGCAGTTACATTCACTTGAATTTCCCAACTGATTATTGGAGATGGGGGCAATGAGAGACCAATTGACCTTTGCGCACACACAAAAAAGATTGATACCTTTATAAAAAAAATTGACAAACCTAAATGTGTGTTTATAGACAGGCGTTAAAATGTGATCTGTAAGTATCGAGTTACAGGAGAGATAAACATGCTATATCTGTCATATACTCGTGATTTGTGATTTACCTATATGTTGATTGCTAGGGCCATGTATGTGGGCCATGAAATGATATATCAGTTGCAGAATGGTTGAATTTTACCTTAATGTGTTTTCAGCTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTTGTGAGTGCTTCTATTTCATGCTTAGATAATGGACTGTGTATTCACTATAAAACGTGTAACATAATTGAACTTTTCTGTTTTACTTCAGGGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGATTTTCTGT</genome_strand>
        <mrna_strand>CAGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATG..........................................................................................................ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAAAAG................................................................................................................................................GTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTT........................................................................................GGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGATTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E240713" ref_strand="+" ref_description="SGN-E240713 [cLED-21-P24]">
      <seq>ttgataaagtttcatgagtattggaaactaatcgtcctgatgcaaagaatgctctttatcaggcaactatcaagcaaggggacttcttgttgaatcgcattcaaaagctttctcgtgtcattgatctctgaagccgttaaaccgtgcgttatacttgttttctcttcaactctctgtagctctaatattgatatattctgccttttcatattgaactcttgggggagtattattttagtaattttctgaaatcaaagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="62585" stop="61726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62285" g_stop="62026" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E240713" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62285" e_stop="62026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGA</genome_strand>
        <mrna_strand>TTGATAAAGTTTCATGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E254359" ref_strand="+" ref_description="SGN-E254359 [cLEG-27-G3]">
      <seq>ttgaaacaaaaggtcgtggatgcgccagagatcttgactgtaattggaaagattccatatctgtccgagtttatgaactcgttatatgattgtcaatacaagtcatttttctcagcatttgctggcttgatggagcatattaaattggatcgttacttgcaaccacacttcagatattatatgagggaggtcagaacagttgtgtattcccagttcctggagtcctacaagagtgttactattgaggccatggccaaggcttttggggtgtctgaggatttcatcgacttggaactatctcggttcattgcagctgggaagttgcattgcaagattgataaagtagcaggagtattggaaactaatcgtcctgatgcaaagaatgctctttatcaggcaactatcaagcaaggggacttcttgttgaatcgcattcaaaagctttctcgtgtcattgatctctgaagccgttaaaccgtgcgttatacttgttttctcttcaactctctgtagctctaatattgatatattctgccttttcatattgaactcttgggggagtattattttagtaattttctgaaatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="63983" stop="61726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63837" g_stop="63826" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63825" i_stop="63682" i_length="144">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63681" g_stop="63573" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="121" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63572" i_stop="62587" i_length="986">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62586" g_stop="62418" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="290" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62417" i_stop="62330" i_length="88">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62329" g_stop="62030" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="590" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="591" polyA_stop="604"/>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E254359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63837" e_stop="63826"/>
          <exon e_start="63681" e_stop="63573"/>
          <exon e_start="62586" e_stop="62418"/>
          <exon e_start="62329" e_stop="62030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAACAAAAGGTAGTCAATATGTACTCCCTCTAATATCCTTGTTTGCTGTATGAGGAATTTTCTAACTTCAAAATTTGTGTTCCCTTGGAATATCTGGGATGTTACTGTGATGAATGTACTTGCAAATTCATTTTTATCACGTATATGTTGCAGGTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTGGTAAGCTTTTCCATTGATAATTTTTTCTTTTCGTATGTGAAGTGTGTCTTCGTAGTTTGCAAAGGTCTGCACACAAAAGTGTATGTAGATTATGTCTGATGGGGGTCCCTGATGCATTTTCTTGAGAATTTGATTGAGAATAGTGGTATTTGGCTATTTGCAAGGGCTTGATTACTGATAATCCAGTTTGGAGGTTTTGATTCTCAGATGACAGTGTTTCCTTTTTGGAGTAACTTGATAGTGAAATAGGTTACCACTGTTGTATAGAAACGTACCCCCTTTTCTTGTCTGAAAGTCTTTTGAATATCAGCACGAATGTATGGGGTCTTAGTGCTCTTTATTAGTCATGCAAGTAGTTTGCTTGATTGGACTAAAGGGATGTTCTTTCTGGCACATATTAAAACAGTAAAAAAGATGCTATTTCCGCTCCTGAAACTTGAAACTTTTCGAATGGATAATAGTTCTTTTCCAATTGCATAGAAAGTAATATCTCGTCATCTTTGTTAAGTTTGACAGGGAGTTTGTTTGGGTTAGGAGTTGGGGTAGGTGGGTGGACTTGTAATTCTCATTGCAGTTAGTCTTAGCTTGCATAGTCTGCTCACTTCTCTTTGTAATAATAGCTAATAAATCTTACATTGAGTTCTCTTCAGAGAACTAACTCAAATTTGTAGGGCAGTTACATTCACTTGAATTTCCCAACTGATTATTGGAGATGGGGGCAATGAGAGACCAATTGACCTTTGCGCACACACAAAAAAGATTGATACCTTTATAAAAAAAATTGACAAACCTAAATGTGTGTTTATAGACAGGCGTTAAAATGTGATCTGTAAGTATCGAGTTACAGGAGAGATAAACATGCTATATCTGTCATATACTCGTGATTTGTGATTTACCTATATGTTGATTGCTAGGGCCATGTATGTGGGCCATGAAATGATATATCAGTTGCAGAATGGTTGAATTTTACCTTAATGTGTTTTCAGCTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTTGTGAGTGCTTCTATTTCATGCTTAGATAATGGACTGTGTATTCACTATAAAACGTGTAACATAATTGAACTTTTCTGTTTTACTTCAGGGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAA</genome_strand>
        <mrna_strand>TTGAAACAAAAG................................................................................................................................................GTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTT........................................................................................GGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E256221" ref_strand="+" ref_description="SGN-E256221 [cLEG-37-B21]">
      <seq>ttgaaacaaaaggtcgtggatgcgccagagatcttgactgtaattggaaagattccatatctgtccgagtttatgaactcgttatatgattgtcaatacaagtcatttttctcagcatttgctggcttgatggagcatattaaattggatcgttacttgcaaccacacttcagatattatatgagggaggtcagaacagttgtgtattcccagttcctggagtcctacaagagtgttactattgaggccatggccaaggcttttggggtgtctgaggatttcatcgacttggaactatctcggttcattgcagctgggaagttgcattgcaagattgataaagtagcaggagtattggaaactaatcgtcctgatgcaaagaatgctctttatcaggcaactatcaagcaaggggacttcttgttgaatcgcattcaaaagctttctcgtgtcattgatctctgaagccgttaaaccgtgcgttatacttgttttctcttcaactctctgtagctctaatattgatatattctgccttttcatattgaactcttgggggagtattattttagtaattttctgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="63983" stop="61734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63837" g_stop="63826" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63825" i_stop="63682" i_length="144">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63681" g_stop="63573" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="121" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63572" i_stop="62587" i_length="986">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62586" g_stop="62418" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="290" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62417" i_stop="62330" i_length="88">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62329" g_stop="62034" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="586" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E256221" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63837" e_stop="63826"/>
          <exon e_start="63681" e_stop="63573"/>
          <exon e_start="62586" e_stop="62418"/>
          <exon e_start="62329" e_stop="62034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAACAAAAGGTAGTCAATATGTACTCCCTCTAATATCCTTGTTTGCTGTATGAGGAATTTTCTAACTTCAAAATTTGTGTTCCCTTGGAATATCTGGGATGTTACTGTGATGAATGTACTTGCAAATTCATTTTTATCACGTATATGTTGCAGGTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTGGTAAGCTTTTCCATTGATAATTTTTTCTTTTCGTATGTGAAGTGTGTCTTCGTAGTTTGCAAAGGTCTGCACACAAAAGTGTATGTAGATTATGTCTGATGGGGGTCCCTGATGCATTTTCTTGAGAATTTGATTGAGAATAGTGGTATTTGGCTATTTGCAAGGGCTTGATTACTGATAATCCAGTTTGGAGGTTTTGATTCTCAGATGACAGTGTTTCCTTTTTGGAGTAACTTGATAGTGAAATAGGTTACCACTGTTGTATAGAAACGTACCCCCTTTTCTTGTCTGAAAGTCTTTTGAATATCAGCACGAATGTATGGGGTCTTAGTGCTCTTTATTAGTCATGCAAGTAGTTTGCTTGATTGGACTAAAGGGATGTTCTTTCTGGCACATATTAAAACAGTAAAAAAGATGCTATTTCCGCTCCTGAAACTTGAAACTTTTCGAATGGATAATAGTTCTTTTCCAATTGCATAGAAAGTAATATCTCGTCATCTTTGTTAAGTTTGACAGGGAGTTTGTTTGGGTTAGGAGTTGGGGTAGGTGGGTGGACTTGTAATTCTCATTGCAGTTAGTCTTAGCTTGCATAGTCTGCTCACTTCTCTTTGTAATAATAGCTAATAAATCTTACATTGAGTTCTCTTCAGAGAACTAACTCAAATTTGTAGGGCAGTTACATTCACTTGAATTTCCCAACTGATTATTGGAGATGGGGGCAATGAGAGACCAATTGACCTTTGCGCACACACAAAAAAGATTGATACCTTTATAAAAAAAATTGACAAACCTAAATGTGTGTTTATAGACAGGCGTTAAAATGTGATCTGTAAGTATCGAGTTACAGGAGAGATAAACATGCTATATCTGTCATATACTCGTGATTTGTGATTTACCTATATGTTGATTGCTAGGGCCATGTATGTGGGCCATGAAATGATATATCAGTTGCAGAATGGTTGAATTTTACCTTAATGTGTTTTCAGCTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTTGTGAGTGCTTCTATTTCATGCTTAGATAATGGACTGTGTATTCACTATAAAACGTGTAACATAATTGAACTTTTCTGTTTTACTTCAGGGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAAT</genome_strand>
        <mrna_strand>TTGAAACAAAAG................................................................................................................................................GTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTT........................................................................................GGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E350106" ref_strand="+" ref_description="SGN-E350106 [cTOS-4-J4]">
      <seq>tgaaacaaaaggtcgtggatgcgccagagatcttgactgtaattggaaagattccatatctgtccgagtttatgaactcgttatatgattgtcaatacaagtcatttttctcagcatttgctggcttgatggagcatattaaattggatcgttacttgcaaccacacttcagatattatatgagggaggtcagaacagttgtgtattcccagttcctggagtcctacaagagtgttactattgaggccatggccaaggcttttggggtgtctgaggatttcatcgacttggaactatctcggttcattgcagctgggaagttgcattgcaagattgataaagtagcaggagtattggaaactaatcgtcctgatgcaaagaatgctctttatcaggcaactatcaagcaaggggacttcttgttgaatcgcattcaaaagctttctcgtgtcattgatctctgaagccgttaaaccgtgcgttatacttgttttctcttcaactctctgtagctctaatattgatatattctgccttttcatattgaactcttgggggagtattattttagtaattttctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="63983" stop="61735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63836" g_stop="63826" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63825" i_stop="63682" i_length="144">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63681" g_stop="63573" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="120" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63572" i_stop="62587" i_length="986">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62586" g_stop="62418" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="289" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62417" i_stop="62330" i_length="88">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62329" g_stop="62034" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="585" r_length="296" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E350106" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63836" e_stop="63826"/>
          <exon e_start="63681" e_stop="63573"/>
          <exon e_start="62586" e_stop="62418"/>
          <exon e_start="62329" e_stop="62034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACAAAAGGTAGTCAATATGTACTCCCTCTAATATCCTTGTTTGCTGTATGAGGAATTTTCTAACTTCAAAATTTGTGTTCCCTTGGAATATCTGGGATGTTACTGTGATGAATGTACTTGCAAATTCATTTTTATCACGTATATGTTGCAGGTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTGGTAAGCTTTTCCATTGATAATTTTTTCTTTTCGTATGTGAAGTGTGTCTTCGTAGTTTGCAAAGGTCTGCACACAAAAGTGTATGTAGATTATGTCTGATGGGGGTCCCTGATGCATTTTCTTGAGAATTTGATTGAGAATAGTGGTATTTGGCTATTTGCAAGGGCTTGATTACTGATAATCCAGTTTGGAGGTTTTGATTCTCAGATGACAGTGTTTCCTTTTTGGAGTAACTTGATAGTGAAATAGGTTACCACTGTTGTATAGAAACGTACCCCCTTTTCTTGTCTGAAAGTCTTTTGAATATCAGCACGAATGTATGGGGTCTTAGTGCTCTTTATTAGTCATGCAAGTAGTTTGCTTGATTGGACTAAAGGGATGTTCTTTCTGGCACATATTAAAACAGTAAAAAAGATGCTATTTCCGCTCCTGAAACTTGAAACTTTTCGAATGGATAATAGTTCTTTTCCAATTGCATAGAAAGTAATATCTCGTCATCTTTGTTAAGTTTGACAGGGAGTTTGTTTGGGTTAGGAGTTGGGGTAGGTGGGTGGACTTGTAATTCTCATTGCAGTTAGTCTTAGCTTGCATAGTCTGCTCACTTCTCTTTGTAATAATAGCTAATAAATCTTACATTGAGTTCTCTTCAGAGAACTAACTCAAATTTGTAGGGCAGTTACATTCACTTGAATTTCCCAACTGATTATTGGAGATGGGGGCAATGAGAGACCAATTGACCTTTGCGCACACACAAAAAAGATTGATACCTTTATAAAAAAAATTGACAAACCTAAATGTGTGTTTATAGACAGGCGTTAAAATGTGATCTGTAAGTATCGAGTTACAGGAGAGATAAACATGCTATATCTGTCATATACTCGTGATTTGTGATTTACCTATATGTTGATTGCTAGGGCCATGTATGTGGGCCATGAAATGATATATCAGTTGCAGAATGGTTGAATTTTACCTTAATGTGTTTTCAGCTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTTGTGAGTGCTTCTATTTCATGCTTAGATAATGGACTGTGTATTCACTATAAAACGTGTAACATAATTGAACTTTTCTGTTTTACTTCAGGGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAAT</genome_strand>
        <mrna_strand>TGAAACAAAAG................................................................................................................................................GTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTT........................................................................................GGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E354528" ref_strand="+" ref_description="SGN-E354528 [cTOS-17-O13]">
      <seq>tgaaacaaaaggtcgtggatgcgccagagatcttgactgtaattggaaagattccatatctgtccgagtttatgaactcgttatatgattgtcaatacaagtcatttttctcagcatttgctggcttgatggagcatattaaattggatcgttacttgcaaccacacttcagatattatatgagggaggtcagaacagttgtgtattcccagttcctggagtcctacaagagtgttactattgaggccatggccaaggcttttggggtgtctgaggatttcatcgacttggaactatctcggttcattgcagctgggaagttgcattgcaagattgataaagtagcaggagtattggaaactaatcgtcctgatgcaaagaatgctctttatcaggcaactatcaagcaaggggacttcttgttgaatcgcattcaaaagctttctcgtgtcattgatctctgaagccgttaaaccgtgcgttatacttgttttctcttcaactctctgtagctctaatattgatatattctgccttttcatattgaactcttgggggagtattattttagtaattttctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="63983" stop="61735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63836" g_stop="63826" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63825" i_stop="63682" i_length="144">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63681" g_stop="63573" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="120" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63572" i_stop="62587" i_length="986">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62586" g_stop="62418" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="289" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62417" i_stop="62330" i_length="88">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62329" g_stop="62035" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="584" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E354528" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63836" e_stop="63826"/>
          <exon e_start="63681" e_stop="63573"/>
          <exon e_start="62586" e_stop="62418"/>
          <exon e_start="62329" e_stop="62035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACAAAAGGTAGTCAATATGTACTCCCTCTAATATCCTTGTTTGCTGTATGAGGAATTTTCTAACTTCAAAATTTGTGTTCCCTTGGAATATCTGGGATGTTACTGTGATGAATGTACTTGCAAATTCATTTTTATCACGTATATGTTGCAGGTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTGGTAAGCTTTTCCATTGATAATTTTTTCTTTTCGTATGTGAAGTGTGTCTTCGTAGTTTGCAAAGGTCTGCACACAAAAGTGTATGTAGATTATGTCTGATGGGGGTCCCTGATGCATTTTCTTGAGAATTTGATTGAGAATAGTGGTATTTGGCTATTTGCAAGGGCTTGATTACTGATAATCCAGTTTGGAGGTTTTGATTCTCAGATGACAGTGTTTCCTTTTTGGAGTAACTTGATAGTGAAATAGGTTACCACTGTTGTATAGAAACGTACCCCCTTTTCTTGTCTGAAAGTCTTTTGAATATCAGCACGAATGTATGGGGTCTTAGTGCTCTTTATTAGTCATGCAAGTAGTTTGCTTGATTGGACTAAAGGGATGTTCTTTCTGGCACATATTAAAACAGTAAAAAAGATGCTATTTCCGCTCCTGAAACTTGAAACTTTTCGAATGGATAATAGTTCTTTTCCAATTGCATAGAAAGTAATATCTCGTCATCTTTGTTAAGTTTGACAGGGAGTTTGTTTGGGTTAGGAGTTGGGGTAGGTGGGTGGACTTGTAATTCTCATTGCAGTTAGTCTTAGCTTGCATAGTCTGCTCACTTCTCTTTGTAATAATAGCTAATAAATCTTACATTGAGTTCTCTTCAGAGAACTAACTCAAATTTGTAGGGCAGTTACATTCACTTGAATTTCCCAACTGATTATTGGAGATGGGGGCAATGAGAGACCAATTGACCTTTGCGCACACACAAAAAAGATTGATACCTTTATAAAAAAAATTGACAAACCTAAATGTGTGTTTATAGACAGGCGTTAAAATGTGATCTGTAAGTATCGAGTTACAGGAGAGATAAACATGCTATATCTGTCATATACTCGTGATTTGTGATTTACCTATATGTTGATTGCTAGGGCCATGTATGTGGGCCATGAAATGATATATCAGTTGCAGAATGGTTGAATTTTACCTTAATGTGTTTTCAGCTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTTGTGAGTGCTTCTATTTCATGCTTAGATAATGGACTGTGTATTCACTATAAAACGTGTAACATAATTGAACTTTTCTGTTTTACTTCAGGGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAA</genome_strand>
        <mrna_strand>TGAAACAAAAG................................................................................................................................................GTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTT........................................................................................GGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E481447" ref_strand="-" ref_description="SGN-E481447 [cSTD-18-A2]">
      <seq>tccttacgagcatcattaccttggaccgggtttctttgaaacaaaaggtcgtggatgcgccagagatcttgacagtaattggaaaaattccatatctgtctgagtttatgaactcgttatatgagtgtcagtacaagtcatttttctcagcatttgctggcttgatggagcatattaaattggatcgttacttgcaaccacacttcagatattatatgagggaggtcagaacagttgtgtattcccagttcctggagtcctacaagagtgttactattgaggccatggccaaggcttttggggtgtctgaggatttcatcgacttggaactatctcggttcattgcagctgggaagttgcattgcaagatcgataaagtagcaggagtgttggaaactaatcgtcctgatgcaaagaatgctctttatcaggcaactatcaagcaaggggacttcttgttgaatcgcattcaaaagctttctcgtgtcattgatctctgaagccgttaaactgtggagttgtacttgttttcttcaactgtctgtagcactaatattgatatattttgccttttcattttgagctcttgggagtacaatttagtaattttctgaaaaaaaaaaaaaaaaaaactcagactagtctctctctctctctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="64172" stop="61742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63872" g_stop="63826" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63825" i_stop="63682" i_length="144">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63681" g_stop="63573" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="156" r_length="109" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63572" i_stop="62587" i_length="986">
            <donor d_prob="0.874" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62586" g_stop="62418" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="325" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62417" i_stop="62330" i_length="88">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62329" g_stop="62036" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="615" r_length="290" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="616" polyA_stop="633"/>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E481447" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481447" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63872" e_stop="63826"/>
          <exon e_start="63681" e_stop="63573"/>
          <exon e_start="62586" e_stop="62418"/>
          <exon e_start="62329" e_stop="62036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAAAAGGTAGTCAATATGTACTCCCTCTAATATCCTTGTTTGCTGTATGAGGAATTTTCTAACTTCAAAATTTGTGTTCCCTTGGAATATCTGGGATGTTACTGTGATGAATGTACTTGCAAATTCATTTTTATCACGTATATGTTGCAGGTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTGGTAAGCTTTTCCATTGATAATTTTTTCTTTTCGTATGTGAAGTGTGTCTTCGTAGTTTGCAAAGGTCTGCACACAAAAGTGTATGTAGATTATGTCTGATGGGGGTCCCTGATGCATTTTCTTGAGAATTTGATTGAGAATAGTGGTATTTGGCTATTTGCAAGGGCTTGATTACTGATAATCCAGTTTGGAGGTTTTGATTCTCAGATGACAGTGTTTCCTTTTTGGAGTAACTTGATAGTGAAATAGGTTACCACTGTTGTATAGAAACGTACCCCCTTTTCTTGTCTGAAAGTCTTTTGAATATCAGCACGAATGTATGGGGTCTTAGTGCTCTTTATTAGTCATGCAAGTAGTTTGCTTGATTGGACTAAAGGGATGTTCTTTCTGGCACATATTAAAACAGTAAAAAAGATGCTATTTCCGCTCCTGAAACTTGAAACTTTTCGAATGGATAATAGTTCTTTTCCAATTGCATAGAAAGTAATATCTCGTCATCTTTGTTAAGTTTGACAGGGAGTTTGTTTGGGTTAGGAGTTGGGGTAGGTGGGTGGACTTGTAATTCTCATTGCAGTTAGTCTTAGCTTGCATAGTCTGCTCACTTCTCTTTGTAATAATAGCTAATAAATCTTACATTGAGTTCTCTTCAGAGAACTAACTCAAATTTGTAGGGCAGTTACATTCACTTGAATTTCCCAACTGATTATTGGAGATGGGGGCAATGAGAGACCAATTGACCTTTGCGCACACACAAAAAAGATTGATACCTTTATAAAAAAAATTGACAAACCTAAATGTGTGTTTATAGACAGGCGTTAAAATGTGATCTGTAAGTATCGAGTTACAGGAGAGATAAACATGCTATATCTGTCATATACTCGTGATTTGTGATTTACCTATATGTTGATTGCTAGGGCCATGTATGTGGGCCATGAAATGATATATCAGTTGCAGAATGGTTGAATTTTACCTTAATGTGTTTTCAGCTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTTGTGAGTGCTTCTATTTCATGCTTAGATAATGGACTGTGTATTCACTATAAAACGTGTAACATAATTGAACTTTTCTGTTTTACTTCAGGGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGT-GCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAA</genome_strand>
        <mrna_strand>TCCTTACGAGCATCATTACCTTGGACCGGGTTTCTTTGAAACAAAAG................................................................................................................................................GTCGTGGATGCGCCAGAGATCTTGACAGTAATTGGAAAAATTCCATATCTGTCTGAGTTTATGAACTCGTTATATGAGTGTCAGTACAAGTCATTTTTCTCAGCATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTT........................................................................................GGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATCGATAAAGTAGCAGGAGTGTTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACTGTGGAGTTGTACTTG-TTT-TCTTCAACTGTCTGTAGCACTAATATTGATATATTTTGCCTTTTCATTTTGAGCTCTT--GGGAGTA-CAATTTAGTAATTTTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E618947" ref_strand="+" ref_description="SGN-E618947 [69631]">
      <seq>ggttgttctgcatgtccactcgtaacttcaagaaagcagcggatcttttccttgattctatctcaacttttaccacatatgagcttttcccctatgatactttcatattttatactgtccttacgagcatcattaccttggaccgggtttctttgaaacaaaaggtcgtggatgcaccagagatcttgacagtaattggaaagattccatatctgtctgagtttatgaactcgctatatgagtgtcagtacaagtcatttttctcagcatttgctggcttgatggagcatattaaattggatcgttacttgcaaccacacttcagatattatatgagggaggtcagaacagttgtgtattcccagttcctggagtcgtacaagagtgttactattgaggccatggccaaggcttttggggtgtctgaggatttcatcgacttggaactatctcgattcattgcagctgggaagttgcattgcaagatcgataaagtagcaggagtgttggaaactaatcgtcctgatgcaaagaatgctctttatcaggcaactatcaagcaaggggacttcttgttgaatcgcattcaaaagctttctcgtgtcattgatctctgaagtcattaaactgtggcgttgtacttgttttcttcaactgtctgtagcactaatattgatatattttgccttttcattttgagctcttgggagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="64289" stop="61761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63989" g_stop="63826" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63825" i_stop="63682" i_length="144">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63681" g_stop="63573" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="273" r_length="109" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63572" i_stop="62587" i_length="986">
            <donor d_prob="0.874" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62586" g_stop="62418" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="442" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62417" i_stop="62330" i_length="88">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62329" g_stop="62057" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="712" r_length="270" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E618947" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63989" e_stop="63826"/>
          <exon e_start="63681" e_stop="63573"/>
          <exon e_start="62586" e_stop="62418"/>
          <exon e_start="62329" e_stop="62057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAAAAGGTAGTCAATATGTACTCCCTCTAATATCCTTGTTTGCTGTATGAGGAATTTTCTAACTTCAAAATTTGTGTTCCCTTGGAATATCTGGGATGTTACTGTGATGAATGTACTTGCAAATTCATTTTTATCACGTATATGTTGCAGGTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTGGTAAGCTTTTCCATTGATAATTTTTTCTTTTCGTATGTGAAGTGTGTCTTCGTAGTTTGCAAAGGTCTGCACACAAAAGTGTATGTAGATTATGTCTGATGGGGGTCCCTGATGCATTTTCTTGAGAATTTGATTGAGAATAGTGGTATTTGGCTATTTGCAAGGGCTTGATTACTGATAATCCAGTTTGGAGGTTTTGATTCTCAGATGACAGTGTTTCCTTTTTGGAGTAACTTGATAGTGAAATAGGTTACCACTGTTGTATAGAAACGTACCCCCTTTTCTTGTCTGAAAGTCTTTTGAATATCAGCACGAATGTATGGGGTCTTAGTGCTCTTTATTAGTCATGCAAGTAGTTTGCTTGATTGGACTAAAGGGATGTTCTTTCTGGCACATATTAAAACAGTAAAAAAGATGCTATTTCCGCTCCTGAAACTTGAAACTTTTCGAATGGATAATAGTTCTTTTCCAATTGCATAGAAAGTAATATCTCGTCATCTTTGTTAAGTTTGACAGGGAGTTTGTTTGGGTTAGGAGTTGGGGTAGGTGGGTGGACTTGTAATTCTCATTGCAGTTAGTCTTAGCTTGCATAGTCTGCTCACTTCTCTTTGTAATAATAGCTAATAAATCTTACATTGAGTTCTCTTCAGAGAACTAACTCAAATTTGTAGGGCAGTTACATTCACTTGAATTTCCCAACTGATTATTGGAGATGGGGGCAATGAGAGACCAATTGACCTTTGCGCACACACAAAAAAGATTGATACCTTTATAAAAAAAATTGACAAACCTAAATGTGTGTTTATAGACAGGCGTTAAAATGTGATCTGTAAGTATCGAGTTACAGGAGAGATAAACATGCTATATCTGTCATATACTCGTGATTTGTGATTTACCTATATGTTGATTGCTAGGGCCATGTATGTGGGCCATGAAATGATATATCAGTTGCAGAATGGTTGAATTTTACCTTAATGTGTTTTCAGCTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTTGTGAGTGCTTCTATTTCATGCTTAGATAATGGACTGTGTATTCACTATAAAACGTGTAACATAATTGAACTTTTCTGTTTTACTTCAGGGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTG-CGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTA</genome_strand>
        <mrna_strand>GGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCGGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCTTTGAAACAAAAG................................................................................................................................................GTCGTGGATGCACCAGAGATCTTGACAGTAATTGGAAAGATTCCATATCTGTCTGAGTTTATGAACTCGCTATATGAGTGTCAGTACAAGTCATTTTTCTCAGCATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCGTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTT........................................................................................GGAACTATCTCGATTCATTGCAGCTGGGAAGTTGCATTGCAAGATCGATAAAGTAGCAGGAGTGTTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGTCATTAAACTGTGGCGTTGTACTTG-TTT-TCTTCAACTGTCTGTAGCACTAATATTGATATATTTTGCCTTTTCATTTTGAGCTCTT--GGGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E255176" ref_strand="+" ref_description="SGN-E255176 [cLEG-31-E6]">
      <seq>ttgaaacaaaaggtcgtggatgcgccagagatcttgactgtaattggaaagattccatatctgtccgagtttatgaactcgttatatgattgtcaatacaagtcatttttctcagcatttgctggcttgatggagcatattaaattggatcgttacttgcaaccacacttcagatattatatgagggaggtcagaacagttgtgtattcccagttcctggagtcctacaagagtgttactattgaggccatggccaaggcttttggggtgtctgaggatttcatcgacttggaactatctcggttcattgcagctgggaagttgcattgcaagattgataaagtagcaggagtattggaaactaatcgtcctgatgcaaagaatgctctttatcaggcaactatcaagcaaggggacttcttgttgaatcgcattcaaaagctttctcgtgtcattgatctctgaagccgttaaaccgtgcgttatactttgtttctcttcaactctctgtagctctaatattgatatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="63983" stop="61789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63837" g_stop="63826" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63825" i_stop="63682" i_length="144">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63681" g_stop="63573" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="121" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63572" i_stop="62587" i_length="986">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62586" g_stop="62418" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="290" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62417" i_stop="62330" i_length="88">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62329" g_stop="62089" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="531" r_length="241" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E255176" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63837" e_stop="63826"/>
          <exon e_start="63681" e_stop="63573"/>
          <exon e_start="62586" e_stop="62418"/>
          <exon e_start="62329" e_stop="62089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAACAAAAGGTAGTCAATATGTACTCCCTCTAATATCCTTGTTTGCTGTATGAGGAATTTTCTAACTTCAAAATTTGTGTTCCCTTGGAATATCTGGGATGTTACTGTGATGAATGTACTTGCAAATTCATTTTTATCACGTATATGTTGCAGGTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTGGTAAGCTTTTCCATTGATAATTTTTTCTTTTCGTATGTGAAGTGTGTCTTCGTAGTTTGCAAAGGTCTGCACACAAAAGTGTATGTAGATTATGTCTGATGGGGGTCCCTGATGCATTTTCTTGAGAATTTGATTGAGAATAGTGGTATTTGGCTATTTGCAAGGGCTTGATTACTGATAATCCAGTTTGGAGGTTTTGATTCTCAGATGACAGTGTTTCCTTTTTGGAGTAACTTGATAGTGAAATAGGTTACCACTGTTGTATAGAAACGTACCCCCTTTTCTTGTCTGAAAGTCTTTTGAATATCAGCACGAATGTATGGGGTCTTAGTGCTCTTTATTAGTCATGCAAGTAGTTTGCTTGATTGGACTAAAGGGATGTTCTTTCTGGCACATATTAAAACAGTAAAAAAGATGCTATTTCCGCTCCTGAAACTTGAAACTTTTCGAATGGATAATAGTTCTTTTCCAATTGCATAGAAAGTAATATCTCGTCATCTTTGTTAAGTTTGACAGGGAGTTTGTTTGGGTTAGGAGTTGGGGTAGGTGGGTGGACTTGTAATTCTCATTGCAGTTAGTCTTAGCTTGCATAGTCTGCTCACTTCTCTTTGTAATAATAGCTAATAAATCTTACATTGAGTTCTCTTCAGAGAACTAACTCAAATTTGTAGGGCAGTTACATTCACTTGAATTTCCCAACTGATTATTGGAGATGGGGGCAATGAGAGACCAATTGACCTTTGCGCACACACAAAAAAGATTGATACCTTTATAAAAAAAATTGACAAACCTAAATGTGTGTTTATAGACAGGCGTTAAAATGTGATCTGTAAGTATCGAGTTACAGGAGAGATAAACATGCTATATCTGTCATATACTCGTGATTTGTGATTTACCTATATGTTGATTGCTAGGGCCATGTATGTGGGCCATGAAATGATATATCAGTTGCAGAATGGTTGAATTTTACCTTAATGTGTTTTCAGCTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTTGTGAGTGCTTCTATTTCATGCTTAGATAATGGACTGTGTATTCACTATAAAACGTGTAACATAATTGAACTTTTCTGTTTTACTTCAGGGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATT</genome_strand>
        <mrna_strand>TTGAAACAAAAG................................................................................................................................................GTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTT........................................................................................GGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTTGTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E207667" ref_strand="+" ref_description="SGN-E207667 [cLEC-32-B10]">
      <seq>ccttacgagcatcattaccttggaccgggtttccttgagcacaaaaggtcgtggatgcgccagagatctggactgtaattggaaagattccatatctgtccgagtttatgaactcgatatatgattgtcaatacaagtcatttttctcaccatttgctggcttgatggagcatattaaattggatcgttacttgcaaccacacttcagatattatatgagggaggtcagaacagttgtgtattcccagatcctggagtcctacaagagagttactattgaagccatggccaaggcttttggggtgtctgaggatttcatcgacttggaactatctcggatcattgcagatgggaagttgcattgcaagattgataaactagcgagagtattggaaactaatcgtcctgatgcaaagaatgctgtttatcaggcaactatcaagcaaggggacttcttgttgaatcgcattcaaaagctttatggtgtcattgatctctgaagccgctaaaccgtgcgttatactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="64171" stop="61829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63871" g_stop="63826" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63825" i_stop="63682" i_length="144">
            <donor d_prob="0.995" d_score="0.93"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63681" g_stop="63573" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="156" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63572" i_stop="62587" i_length="986">
            <donor d_prob="0.874" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62586" g_stop="62418" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="325" r_length="169" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62417" i_stop="62330" i_length="88">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62329" g_stop="62129" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="526" r_length="201" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E207667" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63871" e_stop="63826"/>
          <exon e_start="63681" e_stop="63573"/>
          <exon e_start="62586" e_stop="62418"/>
          <exon e_start="62329" e_stop="62129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGA-AACAAAAGGTAGTCAATATGTACTCCCTCTAATATCCTTGTTTGCTGTATGAGGAATTTTCTAACTTCAAAATTTGTGTTCCCTTGGAATATCTGGGATGTTACTGTGATGAATGTACTTGCAAATTCATTTTTATCACGTATATGTTGCAGGTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTGGTAAGCTTTTCCATTGATAATTTTTTCTTTTCGTATGTGAAGTGTGTCTTCGTAGTTTGCAAAGGTCTGCACACAAAAGTGTATGTAGATTATGTCTGATGGGGGTCCCTGATGCATTTTCTTGAGAATTTGATTGAGAATAGTGGTATTTGGCTATTTGCAAGGGCTTGATTACTGATAATCCAGTTTGGAGGTTTTGATTCTCAGATGACAGTGTTTCCTTTTTGGAGTAACTTGATAGTGAAATAGGTTACCACTGTTGTATAGAAACGTACCCCCTTTTCTTGTCTGAAAGTCTTTTGAATATCAGCACGAATGTATGGGGTCTTAGTGCTCTTTATTAGTCATGCAAGTAGTTTGCTTGATTGGACTAAAGGGATGTTCTTTCTGGCACATATTAAAACAGTAAAAAAGATGCTATTTCCGCTCCTGAAACTTGAAACTTTTCGAATGGATAATAGTTCTTTTCCAATTGCATAGAAAGTAATATCTCGTCATCTTTGTTAAGTTTGACAGGGAGTTTGTTTGGGTTAGGAGTTGGGGTAGGTGGGTGGACTTGTAATTCTCATTGCAGTTAGTCTTAGCTTGCATAGTCTGCTCACTTCTCTTTGTAATAATAGCTAATAAATCTTACATTGAGTTCTCTTCAGAGAACTAACTCAAATTTGTAGGGCAGTTACATTCACTTGAATTTCCCAACTGATTATTGGAGATGGGGGCAATGAGAGACCAATTGACCTTTGCGCACACACAAAAAAGATTGATACCTTTATAAAAAAAATTGACAAACCTAAATGTGTGTTTATAGACAGGCGTTAAAATGTGATCTGTAAGTATCGAGTTACAGGAGAGATAAACATGCTATATCTGTCATATACTCGTGATTTGTGATTTACCTATATGTTGATTGCTAGGGCCATGTATGTGGGCCATGAAATGATATATCAGTTGCAGAATGGTTGAATTTTACCTTAATGTGTTTTCAGCTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTTGTGAGTGCTTCTATTTCATGCTTAGATAATGGACTGTGTATTCACTATAAAACGTGTAACATAATTGAACTTTTCTGTTTTACTTCAGGGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTG</genome_strand>
        <mrna_strand>CCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAGCACAAAAG................................................................................................................................................GTCGTGGATGCGCCAGAGATCTGGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGATATATGATTGTCAATACAAGTCATTTTTCTCACCATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGATCCTGGAGTCCTACAAGAGAGTTACTATTGAAGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTT........................................................................................GGAACTATCTCGGATCATTGCAGATGGGAAGTTGCATTGCAAGATTGATAAACTAGCGAGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTGTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTATGGTGTCATTGATCTCTGAAGCCGCTAAACCGTGCGTTATACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E452165" ref_strand="+" ref_description="SGN-E452165 [cSTS-15-J8]">
      <seq>atttgacttggattttgacctcatcgctaaatgcatagataaggcaaagaaattatttgaaaaggggggtgactgggagagaaagaacaggttgaaggtgtatgaagggttgttctgcatgtccactcgtaacttcaagaaagcagcggatcttttccttgattctatctcaacttttaccacatatgagcttttcccctatgatactttcatattttatactgtccttacgagcatcattaccttggaccgggtttctttgaaacaaaaggtcgtggatgcaccagagatcttgacagtaattggaaagattccatatctgtctgagtttatgaactcgctatatgagtgtcagtacaagtcatttttctcagcatttgctggcttgatggagcatattaaattggatcgttacttgcaaccacacttcagatattatatgagggaggtcagaacagttgtgtattcccagttcctggagtcgtacaagagtgttactattgaggccatggccaaggcttttggggtgtctgaggatttcatcgacttggaactatctcgattcattgcagctgggaagttgcattgcaagatcgataaagtagcaggagtgttggaaactaatcgtcctgatgcaaagaatgctctttatcangcaactatcaagcaaggggacttcttgttgaatcgcattcaaaagctttctcgtgtcattgatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="64498" stop="61857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64198" g_stop="64148" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64045" g_stop="63826" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="271" r_length="220" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63825" i_stop="63682" i_length="144">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63681" g_stop="63573" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="380" r_length="109" r_score="0.945"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63572" i_stop="62587" i_length="986">
            <donor d_prob="0.874" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62586" g_stop="62418" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="549" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62417" i_stop="62330" i_length="88">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62329" g_stop="62157" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="722" r_length="173" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E452165" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64198" e_stop="64148"/>
          <exon e_start="64045" e_stop="63826"/>
          <exon e_start="63681" e_stop="63573"/>
          <exon e_start="62586" e_stop="62418"/>
          <exon e_start="62329" e_stop="62157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAAAAGGTAGTCAATATGTACTCCCTCTAATATCCTTGTTTGCTGTATGAGGAATTTTCTAACTTCAAAATTTGTGTTCCCTTGGAATATCTGGGATGTTACTGTGATGAATGTACTTGCAAATTCATTTTTATCACGTATATGTTGCAGGTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTGGTAAGCTTTTCCATTGATAATTTTTTCTTTTCGTATGTGAAGTGTGTCTTCGTAGTTTGCAAAGGTCTGCACACAAAAGTGTATGTAGATTATGTCTGATGGGGGTCCCTGATGCATTTTCTTGAGAATTTGATTGAGAATAGTGGTATTTGGCTATTTGCAAGGGCTTGATTACTGATAATCCAGTTTGGAGGTTTTGATTCTCAGATGACAGTGTTTCCTTTTTGGAGTAACTTGATAGTGAAATAGGTTACCACTGTTGTATAGAAACGTACCCCCTTTTCTTGTCTGAAAGTCTTTTGAATATCAGCACGAATGTATGGGGTCTTAGTGCTCTTTATTAGTCATGCAAGTAGTTTGCTTGATTGGACTAAAGGGATGTTCTTTCTGGCACATATTAAAACAGTAAAAAAGATGCTATTTCCGCTCCTGAAACTTGAAACTTTTCGAATGGATAATAGTTCTTTTCCAATTGCATAGAAAGTAATATCTCGTCATCTTTGTTAAGTTTGACAGGGAGTTTGTTTGGGTTAGGAGTTGGGGTAGGTGGGTGGACTTGTAATTCTCATTGCAGTTAGTCTTAGCTTGCATAGTCTGCTCACTTCTCTTTGTAATAATAGCTAATAAATCTTACATTGAGTTCTCTTCAGAGAACTAACTCAAATTTGTAGGGCAGTTACATTCACTTGAATTTCCCAACTGATTATTGGAGATGGGGGCAATGAGAGACCAATTGACCTTTGCGCACACACAAAAAAGATTGATACCTTTATAAAAAAAATTGACAAACCTAAATGTGTGTTTATAGACAGGCGTTAAAATGTGATCTGTAAGTATCGAGTTACAGGAGAGATAAACATGCTATATCTGTCATATACTCGTGATTTGTGATTTACCTATATGTTGATTGCTAGGGCCATGTATGTGGGCCATGAAATGATATATCAGTTGCAGAATGGTTGAATTTTACCTTAATGTGTTTTCAGCTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTTGTGAGTGCTTCTATTTCATGCTTAGATAATGGACTGTGTATTCACTATAAAACGTGTAACATAATTGAACTTTTCTGTTTTACTTCAGGGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCT</genome_strand>
        <mrna_strand>ATTTGACTTGGATTTTGACCTCATCGCTAAATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTTGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCGGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCTTTGAAACAAAAG................................................................................................................................................GTCGTGGATGCACCAGAGATCTTGACAGTAATTGGAAAGATTCCATATCTGTCTGAGTTTATGAACTCGCTATATGAGTGTCAGTACAAGTCATTTTTCTCAGCATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCGTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTT........................................................................................GGAACTATCTCGATTCATTGCAGCTGGGAAGTTGCATTGCAAGATCGATAAAGTAGCAGGAGTGTTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCANGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E561593" ref_strand="+" ref_description="SGN-E561593 [17490]">
      <seq>cacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctgggtgttctataccttggcagatgggactatttgacttggattttgacctcatcgctaaatgcatagataaggcaaagaaattatttgaaaaggggggtgactgggagagaaagaacagattgaaggtgtatgaagggttgttctgcatgtccactcgtaacttcaagaaagcagcagatcttttccttggattctatctctacttttaccacatatgagcttttcccctatgatactttcatattttatactgtccttacgagcataattaccttggaccgggtttctttgaaacaaaaggtcgtggatgcaccagagatcttgacagtaattggaaagattccatatctgtctgagtttatgaactcgctatatgagtgtcagtacaagtcatttttctcagcatttgctggcttgatggagcatattaaattggatcgttacttggaaacacacttcagatattatatgagggaggtcagaacagttgtgtattcccagttcctgggagtcctacaagagtgttactattggaggcatgtggcaagggcatttggggtgtctgaggatttcatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="64586" stop="62121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64286" g_stop="64148" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64045" g_stop="63826" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="362" r_length="221" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63825" i_stop="63682" i_length="144">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63681" g_stop="63573" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="471" r_length="109" r_score="0.945"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63572" i_stop="62587" i_length="986">
            <donor d_prob="0.874" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62586" g_stop="62421" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="640" r_length="169" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E561593" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64286" e_stop="64148"/>
          <exon e_start="64045" e_stop="63826"/>
          <exon e_start="63681" e_stop="63573"/>
          <exon e_start="62586" e_stop="62421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCT-AGTGTTCTATACCTTG-CAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTT-GATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAAAAGGTAGTCAATATGTACTCCCTCTAATATCCTTGTTTGCTGTATGAGGAATTTTCTAACTTCAAAATTTGTGTTCCCTTGGAATATCTGGGATGTTACTGTGATGAATGTACTTGCAAATTCATTTTTATCACGTATATGTTGCAGGTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTGGTAAGCTTTTCCATTGATAATTTTTTCTTTTCGTATGTGAAGTGTGTCTTCGTAGTTTGCAAAGGTCTGCACACAAAAGTGTATGTAGATTATGTCTGATGGGGGTCCCTGATGCATTTTCTTGAGAATTTGATTGAGAATAGTGGTATTTGGCTATTTGCAAGGGCTTGATTACTGATAATCCAGTTTGGAGGTTTTGATTCTCAGATGACAGTGTTTCCTTTTTGGAGTAACTTGATAGTGAAATAGGTTACCACTGTTGTATAGAAACGTACCCCCTTTTCTTGTCTGAAAGTCTTTTGAATATCAGCACGAATGTATGGGGTCTTAGTGCTCTTTATTAGTCATGCAAGTAGTTTGCTTGATTGGACTAAAGGGATGTTCTTTCTGGCACATATTAAAACAGTAAAAAAGATGCTATTTCCGCTCCTGAAACTTGAAACTTTTCGAATGGATAATAGTTCTTTTCCAATTGCATAGAAAGTAATATCTCGTCATCTTTGTTAAGTTTGACAGGGAGTTTGTTTGGGTTAGGAGTTGGGGTAGGTGGGTGGACTTGTAATTCTCATTGCAGTTAGTCTTAGCTTGCATAGTCTGCTCACTTCTCTTTGTAATAATAGCTAATAAATCTTACATTGAGTTCTCTTCAGAGAACTAACTCAAATTTGTAGGGCAGTTACATTCACTTGAATTTCCCAACTGATTATTGGAGATGGGGGCAATGAGAGACCAATTGACCTTTGCGCACACACAAAAAAGATTGATACCTTTATAAAAAAAATTGACAAACCTAAATGTGTGTTTATAGACAGGCGTTAAAATGTGATCTGTAAGTATCGAGTTACAGGAGAGATAAACATGCTATATCTGTCATATACTCGTGATTTGTGATTTACCTATATGTTGATTGCTAGGGCCATGTATGTGGGCCATGAAATGATATATCAGTTGCAGAATGGTTGAATTTTACCTTAATGTGTTTTCAGCTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCT-GGAGTCCTACAAGAGTGTTACTATT-GAGGC-CATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGA</genome_strand>
        <mrna_strand>CACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTGGGTGTTCTATACCTTGGCAGATGGGACTATTTGACTTGGATTTTGACCTCATCGCTAAATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTTGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGATTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGGATTCTATCTCTACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATAATTACCTTGGACCGGGTTTCTTTGAAACAAAAG................................................................................................................................................GTCGTGGATGCACCAGAGATCTTGACAGTAATTGGAAAGATTCCATATCTGTCTGAGTTTATGAACTCGCTATATGAGTGTCAGTACAAGTCATTTTTCTCAGCATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGGAAACACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGGAGTCCTACAAGAGTGTTACTATTGGAGGCATGTGGCAAGGGCATTTGGGGTGTCTGAGGATTTCATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E320962" ref_strand="+" ref_description="SGN-E320962 [cTOB-13-K6]">
      <seq>tacattagaattggtgacaaggggaaagcacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctagtgttctataccttgcagatgggattatttgacttggattttgacctcatctctaaatgcatagataaggcaaagaaattattcgaaaaggggggtgactgggagagaaagaacaggttgaaggtgtatgaagggttgttctgcatgtccactcgtaacttcaagaaagcagcagatcttttccttgattctatctcaacttttaccacatatgagcttttcccctatgatactttcatattttatactgtccttacgagcatcattaccttggaccgggtttccttgaaacaaaaggtcgtggatgcgccagagatcttgactgtaattggaaagattccatatctgtccgagtttatgaactcgttatatgattgtcaatacaagtcatttttctcagcatttgctggcttgatggagcatattaaattggatcgttacttgcaaccacacttcagatattatatgagggaggtcagaacagttgtgtattcccagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="64709" stop="62193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64409" g_stop="64389" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64293" g_stop="64148" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="167" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64045" g_stop="63826" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="387" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63825" i_stop="63682" i_length="144">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63681" g_stop="63573" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="496" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63572" i_stop="62587" i_length="986">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62586" g_stop="62493" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="590" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E320962" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64409" e_stop="64389"/>
          <exon e_start="64293" e_stop="64148"/>
          <exon e_start="64045" e_stop="63826"/>
          <exon e_start="63681" e_stop="63573"/>
          <exon e_start="62586" e_stop="62493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAAAAGGTAGTCAATATGTACTCCCTCTAATATCCTTGTTTGCTGTATGAGGAATTTTCTAACTTCAAAATTTGTGTTCCCTTGGAATATCTGGGATGTTACTGTGATGAATGTACTTGCAAATTCATTTTTATCACGTATATGTTGCAGGTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTGGTAAGCTTTTCCATTGATAATTTTTTCTTTTCGTATGTGAAGTGTGTCTTCGTAGTTTGCAAAGGTCTGCACACAAAAGTGTATGTAGATTATGTCTGATGGGGGTCCCTGATGCATTTTCTTGAGAATTTGATTGAGAATAGTGGTATTTGGCTATTTGCAAGGGCTTGATTACTGATAATCCAGTTTGGAGGTTTTGATTCTCAGATGACAGTGTTTCCTTTTTGGAGTAACTTGATAGTGAAATAGGTTACCACTGTTGTATAGAAACGTACCCCCTTTTCTTGTCTGAAAGTCTTTTGAATATCAGCACGAATGTATGGGGTCTTAGTGCTCTTTATTAGTCATGCAAGTAGTTTGCTTGATTGGACTAAAGGGATGTTCTTTCTGGCACATATTAAAACAGTAAAAAAGATGCTATTTCCGCTCCTGAAACTTGAAACTTTTCGAATGGATAATAGTTCTTTTCCAATTGCATAGAAAGTAATATCTCGTCATCTTTGTTAAGTTTGACAGGGAGTTTGTTTGGGTTAGGAGTTGGGGTAGGTGGGTGGACTTGTAATTCTCATTGCAGTTAGTCTTAGCTTGCATAGTCTGCTCACTTCTCTTTGTAATAATAGCTAATAAATCTTACATTGAGTTCTCTTCAGAGAACTAACTCAAATTTGTAGGGCAGTTACATTCACTTGAATTTCCCAACTGATTATTGGAGATGGGGGCAATGAGAGACCAATTGACCTTTGCGCACACACAAAAAAGATTGATACCTTTATAAAAAAAATTGACAAACCTAAATGTGTGTTTATAGACAGGCGTTAAAATGTGATCTGTAAGTATCGAGTTACAGGAGAGATAAACATGCTATATCTGTCATATACTCGTGATTTGTGATTTACCTATATGTTGATTGCTAGGGCCATGTATGTGGGCCATGAAATGATATATCAGTTGCAGAATGGTTGAATTTTACCTTAATGTGTTTTCAGCTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTT</genome_strand>
        <mrna_strand>TACATTAGAATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAAAAG................................................................................................................................................GTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E284672" ref_strand="+" ref_description="SGN-E284672 [cLES-3-C22]">
      <seq>gacctagtgttctataccttgcagatgggattatttgacttggattttgacctcatctctaaatgcatagataaggcaaagaaattattcgaaaaggggggtgactgggagagaaagaacaggttgaaggtgtatgaagggttgttctgcatgtccactcgtaacttcaagaaagcagcagatcttttccttgattctatctcaacttttaccacatatgagcttttcccctatgatactttcatattttatactgtccttacgagcatcattaccttggaccgggtttccttgaaacaaaaggtcgtggatgcgccagagatcttgactgtaattggaaagattccatatctgtccgagtttatgaactcgttatatgattgtcaatacaagtcatttttctcagcatttgctggcttgatggagcatattaaattggatcgttacttgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="64530" stop="62245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64230" g_stop="64148" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64045" g_stop="63826" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="303" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63825" i_stop="63682" i_length="144">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63681" g_stop="63573" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="412" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63572" i_stop="62587" i_length="986">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62586" g_stop="62545" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="454" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E284672" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64230" e_stop="64148"/>
          <exon e_start="64045" e_stop="63826"/>
          <exon e_start="63681" e_stop="63573"/>
          <exon e_start="62586" e_stop="62545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAAAAGGTAGTCAATATGTACTCCCTCTAATATCCTTGTTTGCTGTATGAGGAATTTTCTAACTTCAAAATTTGTGTTCCCTTGGAATATCTGGGATGTTACTGTGATGAATGTACTTGCAAATTCATTTTTATCACGTATATGTTGCAGGTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTGGTAAGCTTTTCCATTGATAATTTTTTCTTTTCGTATGTGAAGTGTGTCTTCGTAGTTTGCAAAGGTCTGCACACAAAAGTGTATGTAGATTATGTCTGATGGGGGTCCCTGATGCATTTTCTTGAGAATTTGATTGAGAATAGTGGTATTTGGCTATTTGCAAGGGCTTGATTACTGATAATCCAGTTTGGAGGTTTTGATTCTCAGATGACAGTGTTTCCTTTTTGGAGTAACTTGATAGTGAAATAGGTTACCACTGTTGTATAGAAACGTACCCCCTTTTCTTGTCTGAAAGTCTTTTGAATATCAGCACGAATGTATGGGGTCTTAGTGCTCTTTATTAGTCATGCAAGTAGTTTGCTTGATTGGACTAAAGGGATGTTCTTTCTGGCACATATTAAAACAGTAAAAAAGATGCTATTTCCGCTCCTGAAACTTGAAACTTTTCGAATGGATAATAGTTCTTTTCCAATTGCATAGAAAGTAATATCTCGTCATCTTTGTTAAGTTTGACAGGGAGTTTGTTTGGGTTAGGAGTTGGGGTAGGTGGGTGGACTTGTAATTCTCATTGCAGTTAGTCTTAGCTTGCATAGTCTGCTCACTTCTCTTTGTAATAATAGCTAATAAATCTTACATTGAGTTCTCTTCAGAGAACTAACTCAAATTTGTAGGGCAGTTACATTCACTTGAATTTCCCAACTGATTATTGGAGATGGGGGCAATGAGAGACCAATTGACCTTTGCGCACACACAAAAAAGATTGATACCTTTATAAAAAAAATTGACAAACCTAAATGTGTGTTTATAGACAGGCGTTAAAATGTGATCTGTAAGTATCGAGTTACAGGAGAGATAAACATGCTATATCTGTCATATACTCGTGATTTGTGATTTACCTATATGTTGATTGCTAGGGCCATGTATGTGGGCCATGAAATGATATATCAGTTGCAGAATGGTTGAATTTTACCTTAATGTGTTTTCAGCTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAAC</genome_strand>
        <mrna_strand>GACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAAAAG................................................................................................................................................GTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E717707" ref_strand="+" ref_description="SGN-E717707 [FC02CA07]">
      <seq>gacaccctttcgcaagcaaagtatctgaaaaacagtgaaatctttgagagagaactatggattcggaagaaggaacccagcaaccccagctagttcttgcacacaaactattccttttgacacatccagatgtcaatgacttggataaagttcgtcttcgtgaagaagtcttggaagctgtggtctccaatgatatggctccgttgtttgaaaccctagtttcaaaaggggtttttagtttgaatctggacgttcttgatcctatgcgtgttaagaatgctgatgagcttaaaaaactcgatgagaagattgctgatgcaaaagaaaatcttggtgaaagtgaagttcgagaagctcatttggctaaatcattgttctacattaggattggtgacaaggggaaagcacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctggtgttctataccttgcagatgggattatttgacttggattttgacctcatctctaaatgcatagataaggcaaagaaattatttgaaaaggggggtgactgggagagaaagaacaggttgaaggtgtatgaagggttgttctgcatgtccactcgtaacttcaagaaagcagcagatcttttccttgattctatctcaacttttaccacatatgagcttttcccctatgatactttcatattttatactgtccttacgagcatcattaccttggaccgggtttccttgaaacaaaaggtcgtggatgcgccagagatcttgactgtaattggaaagattccatatctgtccgagtttatgaactcgttatatgattgtcaatacaagtcatttttctcagcatttgctggcttgatggagcatattaaattggatcgttacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68293" stop="62248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67994" g_stop="67803" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="307" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="398" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64148" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="544" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64045" g_stop="63826" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="764" r_length="220" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63825" i_stop="63682" i_length="144">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63681" g_stop="63573" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="873" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63572" i_stop="62587" i_length="986">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62586" g_stop="62548" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="912" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E717707" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>912</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67994" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64148"/>
          <exon e_start="64045" e_stop="63826"/>
          <exon e_start="63681" e_stop="63573"/>
          <exon e_start="62586" e_stop="62548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACCCTTTCGCAAGCAAAGTATCTGAAAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAAAAGGTAGTCAATATGTACTCCCTCTAATATCCTTGTTTGCTGTATGAGGAATTTTCTAACTTCAAAATTTGTGTTCCCTTGGAATATCTGGGATGTTACTGTGATGAATGTACTTGCAAATTCATTTTTATCACGTATATGTTGCAGGTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTGGTAAGCTTTTCCATTGATAATTTTTTCTTTTCGTATGTGAAGTGTGTCTTCGTAGTTTGCAAAGGTCTGCACACAAAAGTGTATGTAGATTATGTCTGATGGGGGTCCCTGATGCATTTTCTTGAGAATTTGATTGAGAATAGTGGTATTTGGCTATTTGCAAGGGCTTGATTACTGATAATCCAGTTTGGAGGTTTTGATTCTCAGATGACAGTGTTTCCTTTTTGGAGTAACTTGATAGTGAAATAGGTTACCACTGTTGTATAGAAACGTACCCCCTTTTCTTGTCTGAAAGTCTTTTGAATATCAGCACGAATGTATGGGGTCTTAGTGCTCTTTATTAGTCATGCAAGTAGTTTGCTTGATTGGACTAAAGGGATGTTCTTTCTGGCACATATTAAAACAGTAAAAAAGATGCTATTTCCGCTCCTGAAACTTGAAACTTTTCGAATGGATAATAGTTCTTTTCCAATTGCATAGAAAGTAATATCTCGTCATCTTTGTTAAGTTTGACAGGGAGTTTGTTTGGGTTAGGAGTTGGGGTAGGTGGGTGGACTTGTAATTCTCATTGCAGTTAGTCTTAGCTTGCATAGTCTGCTCACTTCTCTTTGTAATAATAGCTAATAAATCTTACATTGAGTTCTCTTCAGAGAACTAACTCAAATTTGTAGGGCAGTTACATTCACTTGAATTTCCCAACTGATTATTGGAGATGGGGGCAATGAGAGACCAATTGACCTTTGCGCACACACAAAAAAGATTGATACCTTTATAAAAAAAATTGACAAACCTAAATGTGTGTTTATAGACAGGCGTTAAAATGTGATCTGTAAGTATCGAGTTACAGGAGAGATAAACATGCTATATCTGTCATATACTCGTGATTTGTGATTTACCTATATGTTGATTGCTAGGGCCATGTATGTGGGCCATGAAATGATATATCAGTTGCAGAATGGTTGAATTTTACCTTAATGTGTTTTCAGCTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGC</genome_strand>
        <mrna_strand>GACACCCTTTCGCAAGCAAAGTATCTGAAAAACAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAGCAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATG..........................................................................................................ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGACGTTCTTGATCCTATGCGTGTTAAGAATGCTGATGAGCTTAAAAAACTCGATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAAAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGGATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTGGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTTGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAAAAG................................................................................................................................................GTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E201645" ref_strand="+" ref_description="SGN-E201645 [cLEC-11-H19]">
      <seq>agcacttgtacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctagtgttctataccttgcagatgggattatttgacttggattttgacctcatctctaaatgcatagataaggcaaagaaattattcgaaaaggggggtgactgggagagaaagaacaggttgaaggtgtatgaagggttgttctgcatgtccactcgtaacttcaagaaagcagcagatcttttccttgattctatctcaacttttaccacatatgagcttttcccctatgatactttcatattttatactgtccttacgagcatcattaccttggaccgggtttccttgaaacaaaaggtcgtggatgcgccagagatcttgactgtaattggaaagattccatatctgtccgagtttatgaactcgttatatgattgtcaatacaagtcatttttctcagcatttgctggcttgatggagcatattaaattggatcgttacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="64588" stop="62248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64288" g_stop="64148" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64045" g_stop="63826" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="361" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63825" i_stop="63682" i_length="144">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63681" g_stop="63573" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="470" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63572" i_stop="62587" i_length="986">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62586" g_stop="62548" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="509" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E201645" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64288" e_stop="64148"/>
          <exon e_start="64045" e_stop="63826"/>
          <exon e_start="63681" e_stop="63573"/>
          <exon e_start="62586" e_stop="62548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAAAAGGTAGTCAATATGTACTCCCTCTAATATCCTTGTTTGCTGTATGAGGAATTTTCTAACTTCAAAATTTGTGTTCCCTTGGAATATCTGGGATGTTACTGTGATGAATGTACTTGCAAATTCATTTTTATCACGTATATGTTGCAGGTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTGGTAAGCTTTTCCATTGATAATTTTTTCTTTTCGTATGTGAAGTGTGTCTTCGTAGTTTGCAAAGGTCTGCACACAAAAGTGTATGTAGATTATGTCTGATGGGGGTCCCTGATGCATTTTCTTGAGAATTTGATTGAGAATAGTGGTATTTGGCTATTTGCAAGGGCTTGATTACTGATAATCCAGTTTGGAGGTTTTGATTCTCAGATGACAGTGTTTCCTTTTTGGAGTAACTTGATAGTGAAATAGGTTACCACTGTTGTATAGAAACGTACCCCCTTTTCTTGTCTGAAAGTCTTTTGAATATCAGCACGAATGTATGGGGTCTTAGTGCTCTTTATTAGTCATGCAAGTAGTTTGCTTGATTGGACTAAAGGGATGTTCTTTCTGGCACATATTAAAACAGTAAAAAAGATGCTATTTCCGCTCCTGAAACTTGAAACTTTTCGAATGGATAATAGTTCTTTTCCAATTGCATAGAAAGTAATATCTCGTCATCTTTGTTAAGTTTGACAGGGAGTTTGTTTGGGTTAGGAGTTGGGGTAGGTGGGTGGACTTGTAATTCTCATTGCAGTTAGTCTTAGCTTGCATAGTCTGCTCACTTCTCTTTGTAATAATAGCTAATAAATCTTACATTGAGTTCTCTTCAGAGAACTAACTCAAATTTGTAGGGCAGTTACATTCACTTGAATTTCCCAACTGATTATTGGAGATGGGGGCAATGAGAGACCAATTGACCTTTGCGCACACACAAAAAAGATTGATACCTTTATAAAAAAAATTGACAAACCTAAATGTGTGTTTATAGACAGGCGTTAAAATGTGATCTGTAAGTATCGAGTTACAGGAGAGATAAACATGCTATATCTGTCATATACTCGTGATTTGTGATTTACCTATATGTTGATTGCTAGGGCCATGTATGTGGGCCATGAAATGATATATCAGTTGCAGAATGGTTGAATTTTACCTTAATGTGTTTTCAGCTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGC</genome_strand>
        <mrna_strand>AGCACTTGTACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAAAAG................................................................................................................................................GTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E416891" ref_strand="+" ref_description="SGN-E416891 [STM-23-N8]">
      <seq>gttcgagaagctcatttggctaaatcattgttctacattcggattggtgacaaggggaaagcacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctggtgttctataccttgcagatgggactatttgacttggattttgacctcatctctaaatgcatagataaggcaaagaaattatttgaaaaggggggtgactgggagaggaagaacaggttgaaggtgtatgaagggttgttctgcatgtccactcgtaatttcaagaaagcagcagatcttttccttgattctatctcaacttttaccacatatgagcttttcccctatgatactttcatattttatactgtccttacgagcatcattaccttggaccgggtttctttgaaacaaaaggtcgtggatgcgccagagatcttgacagtaattggaaagattcatatctgtctgagtttatgaactcgttatatgagtgtcagtacaagtcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="64742" stop="63285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64442" g_stop="64389" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64293" g_stop="64148" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="200" r_length="146" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64045" g_stop="63826" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="420" r_length="220" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63825" i_stop="63682" i_length="144">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63681" g_stop="63585" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="516" r_length="96" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E416891" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64442" e_stop="64389"/>
          <exon e_start="64293" e_stop="64148"/>
          <exon e_start="64045" e_stop="63826"/>
          <exon e_start="63681" e_stop="63585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAAAAGGTAGTCAATATGTACTCCCTCTAATATCCTTGTTTGCTGTATGAGGAATTTTCTAACTTCAAAATTTGTGTTCCCTTGGAATATCTGGGATGTTACTGTGATGAATGTACTTGCAAATTCATTTTTATCACGTATATGTTGCAGGTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTT</genome_strand>
        <mrna_strand>GTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTCGGATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTGGTGTTCTATACCTTGCAGATGGGACTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTTGAAAAGGGGGGTGACTGGGAGAGGAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAATTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCTTTGAAACAAAAG................................................................................................................................................GTCGTGGATGCGCCAGAGATCTTGACAGTAATTGGAAAGATT-CATATCTGTCTGAGTTTATGAACTCGTTATATGAGTGTCAGTACAAGTCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E590564" ref_strand="+" ref_description="SGN-E590564 [44162]">
      <seq>aaacaggaaacctctgagagagaactatggattcggaagaaggaacccagcaaccccnagctagttcttgcacacaaactattccttttgacacatccagatgtcaatgacttggataaagtttgtctccgtgaagaagtcttggaagctgtggtctccaacgatatggctccgttgtttgaaaccctagtttcaaaaggggtttttagtttgaatctggaggttcttgatcctatgcgtgttaagaatgctgatgagctcaaaaaactcgatgagaagattgctgatgcagaagaaaaccttggtgaaagtgaagttcgagaagctcatttggctaaatcattgttctacattcggattggtgacaaggggaaagcacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctggtgttctataccttgcagatgggactatttgacttggattttgacctcatctctaaatgcatagataaggcaaagaaattatttgaaaaggggggtgactgggagaggaagaacaggttgaaggtgtatgaagggttgttctgcatgtccactcgtaatttcaagaaagcagcagatcttttccttggattctatctcaacttttaccacatatgagcttttcccctatgatactttcatattttatactgtccttacgagcatcattaccttgggaccggggtttctttgaaaacaaaaggtcgtgggatgccgccagagatcttgacagtaattggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68266" stop="63343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67966" g_stop="67803" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="278" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="369" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64148" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="515" r_length="146" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64045" g_stop="63826" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="739" r_length="224" r_score="0.945"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63825" i_stop="63682" i_length="144">
            <donor d_prob="0.995" d_score="0.85"/>
            <acceptor a_prob="1.000" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63681" g_stop="63643" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="780" r_length="41" r_score="0.872"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E590564" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67966" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64148"/>
          <exon e_start="64045" e_stop="63826"/>
          <exon e_start="63681" e_stop="63643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCC-AGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTT-GATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTT-GGACC-GGGTTTCCTTG-AAACAAAAGGTAGTCAATATGTACTCCCTCTAATATCCTTGTTTGCTGTATGAGGAATTTTCTAACTTCAAAATTTGTGTTCCCTTGGAATATCTGGGATGTTACTGTGATGAATGTACTTGCAAATTCATTTTTATCACGTATATGTTGCAGGTCGT-GGATG-CGCCAGAGATCTTGACTGTAATTGGAAAG</genome_strand>
        <mrna_strand>AAAC-AG-GAAACCTCTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAGCAACCCCNAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTTGTCTCCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAACG..........................................................................................................ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAATGCTGATGAGCTCAAAAAACTCGATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAACCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTCGGATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTGGTGTTCTATACCTTGCAGATGGGACTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTTGAAAAGGGGGGTGACTGGGAGAGGAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAATTTCAAGAAAGCAGCAGATCTTTTCCTTGGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGGACCGGGGTTTCTTTGAAAACAAAAG................................................................................................................................................GTCGTGGGATGCCGCCAGAGATCTTGACAGTAATTGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E706461" ref_strand="+" ref_description="SGN-E706461 [FA30AB02]">
      <seq>ctgaaaactagtgaaatctttgagagagaactatggattcggaagaaggaacccaacaaccccagctagttcttgcacacaaactattccttttgacacatccagatgtcaatgacttggataaagttcgtcttcgtgaagaagtcttggaagctgtggtctccaatgatatggctccgttgtttgaaaccctagtttcaaaaggggtttttagtttgaatctggaggttcttgatcctatgcgtgttaagaacgctgatgagcttaaaaaactcgatgagaagattgctgatgcagaagaaaatcttggtgaaagtgaagttcgagaagctcatttggctaaatcattgttctacattagaattggtgacaaggggaaagcacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctagtgttctataccttgcagatgggattatttgacttggattttgacctcatctctaaatgcatagataaggcaaagaaattattcgaaaaggggggtgactgggagagaaagaacaggttgaaggtgtatgaagggttgttctgcatgtccactcgtaacttcaagaaagcagcagatcttttccttgattctatctcaacttttaccacatatgagcttttcccctatgatactttcatattttatactgtcccttacgagcatcattaccttggaccgggtttccttgaaacaaaaggtcgtggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68270" stop="63517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67970" g_stop="67803" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="283" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="374" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64148" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="520" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64045" g_stop="63826" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="741" r_length="221" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63825" i_stop="63682" i_length="144">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63681" g_stop="63672" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="742" r_stop="751" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E706461" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67970" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64148"/>
          <exon e_start="64045" e_stop="63826"/>
          <exon e_start="63681" e_stop="63672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGT-CCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAAAAGGTAGTCAATATGTACTCCCTCTAATATCCTTGTTTGCTGTATGAGGAATTTTCTAACTTCAAAATTTGTGTTCCCTTGGAATATCTGGGATGTTACTGTGATGAATGTACTTGCAAATTCATTTTTATCACGTATATGTTGCAGGTCGTGGATG</genome_strand>
        <mrna_strand>CTGAAAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATG..........................................................................................................ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAAAAG................................................................................................................................................GTCGTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E603875" ref_strand="+" ref_description="SGN-E603875 [67064]">
      <seq>ctccatacaccctttcgcaagcaaagtatctgaaaaacagtgaaacctctcagagagaactatggattcggaagaaggaacccagcaacctcagctagttcttgcacacaaactattccttttgacacatccagatgtcaatgacttggataaagttcgtctccgtgaagaagtcttggaagctgtggtctccaatgatatggctccgttgtttgaaaccctagtttcaaaaggggtttttagtttgaatctggaggttcttgatcccatgcgtgttaagaatgctgatgagctcaaaaaactcgatgagaagattgctgatgcagaagaaaaccttggtgaaagtgaagttcgagaagctcatttggctaaatcactgttctacattcggattggtgacaaggggaaagcacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctggtgttctataccttgcagatgggactatttgacttggattttgacctcatcgctaaatgcatagataaggcaaagaaattatttgaaaaggggggtgactgggagagaaagaacaggttgaaggtgtatgaagggttgttctgcatgtccactcgtaacttcaagaaagcagcggatcttttccttgattctatctcaacttttaccacatatgagcttttcccctatgatacttttcatattttatactgtccttacgagcatctattaccttggacccgggtttctttgaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68294" stop="63529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67999" g_stop="67803" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="312" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="403" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64148" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="549" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64045" g_stop="63829" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="768" r_length="219" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E603875" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E603875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67999" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64148"/>
          <exon e_start="64045" e_stop="63829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTACACCCTTTCGCAAGCAAAGTATCTGAAAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATAC-TTTCATATTTTATACTGTCCTTACGAGCATC-ATTACCTTGGACCGGGTTTCCTTGAAACAA</genome_strand>
        <mrna_strand>CTCCATACACCCTTTCGCAAGCAAAGTATCTGAAAAACAGTGAAACCTCTCAGAGAGAACTATGGATTCGGAAGAAGGAACCCAGCAACCTCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTCCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATG..........................................................................................................ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCCATGCGTGTTAAGAATGCTGATGAGCTCAAAAAACTCGATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAACCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCACTGTTCTACATTCGGATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTGGTGTTCTATACCTTGCAGATGGGACTATTTGACTTGGATTTTGACCTCATCGCTAAATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTTGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCGGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTTCATATTTTATACTGTCCTTACGAGCATCTATTACCTTGGACCCGGGTTTCTTTGAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E246156" ref_strand="+" ref_description="SGN-E246156 [cLEF-40-F3]">
      <seq>acaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctagtgttctataccttgcagatgggattatttgacttggattttgacctcatctctaaatgcatagataaggcaaagaaattattcgaaaaggggggtgactgggagagaaagaacaggttgaaggtgtatgaagggttgttctgcatgtccactcgtaacttcaagaaagcagcagatcttttccttgattctatctcaacttttaccacatatgagcttttcccctatgatactttcatattttatactgtccttacgagcatcattaccttggaccgggtttccttgaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="64579" stop="63529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64279" g_stop="64148" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64045" g_stop="63829" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="349" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E246156" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64279" e_stop="64148"/>
          <exon e_start="64045" e_stop="63829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAA</genome_strand>
        <mrna_strand>ACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E578915" ref_strand="+" ref_description="SGN-E578915 [86038]">
      <seq>atggattcggaagaaggaacccagcaaccccagctagttcttgcacacaaactattccttttgacacatccagatgtcaatgacttggataaagtttgtctccgtgaagaagtcttggaagctgtggtctccaacgatatggctccgttgtttgaaaccctagtttcaaaaggggtttttagtttgaatctggaggttcttgatcctatgcgtgttaagaatgctgatgagctcaaaaaactcgatgagaagattgctgatgcagaagaaaaccttggtgaaagtgaagttcgagaagctcatttggctaaatcattgttctacattcggattggtgacaaggggaaagcacttgaacaactcaaggtgactganaaaaaaactgttgcagttgggcaaaagatggacctggtgttctataccttgcagatgggactatttgacttggattttgacctcatctctaaatgcatagataaggcaaagaaattatttgaaaaggggggtgactgggagaggaagaacaggttgaaggtgtatgaagggttgttctgcatgtccactcgtaatttcaagaaagcagcagatcttttccttgattctatctcaactttttaccacatatgagcttttcccctatgatactttcatattttatactgtccttacgagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68238" stop="63559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67938" g_stop="67803" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="251" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="342" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64148" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="488" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64045" g_stop="63859" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="676" r_length="188" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E578915" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67938" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64148"/>
          <exon e_start="64045" e_stop="63859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAAC-TTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATC</genome_strand>
        <mrna_strand>ATGGATTCGGAAGAAGGAACCCAGCAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTTGTCTCCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAACG..........................................................................................................ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAATGCTGATGAGCTCAAAAAACTCGATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAACCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTCGGATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGANAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTGGTGTTCTATACCTTGCAGATGGGACTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTTGAAAAGGGGGGTGACTGGGAGAGGAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAATTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E477490" ref_strand="+" ref_description="SGN-E477490 [cSTB-48-I4]">
      <seq>ttcggaagaaggaacccagcaacctcagctagttcttgcacacaaactattccttttgacacatccagatgtcaatgacttggataaagttcgtctccgtgaagaagtcttggaagctgtggtctccaatgatatggctccgttgtttgaaaccctagtttcaaaaggggtttttagtttgaatctggaggttcttgatcccatgcgtgttaagaatgctgatgagctcaaaaaactcgatgagaagattgctgatgcagaagaaaaccttggtgaaagtgaagttcgagaagctcatttggctaaatcactgttctacattcggattggtgacaaggggaaagcacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctggtgttctataccttgcagatgggactatttgacttggattttgacctcatcgctaaatgcatagataaggcaaagaaattatttgaaaaggggggtgactgggagagaaagaacaggttgaaggtgtatgaagggttgttctgcatgtccactcgtaacttcaagaaagcagcggatcttttccttgattctatctcaacttttaccacatatgagcttttcccctatgatactttcatattttatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68233" stop="63574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67933" g_stop="67803" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="246" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="337" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64148" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="483" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64045" g_stop="63874" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="655" r_length="172" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E477490" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67933" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64148"/>
          <exon e_start="64045" e_stop="63874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACT</genome_strand>
        <mrna_strand>TTCGGAAGAAGGAACCCAGCAACCTCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTCCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATG..........................................................................................................ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCCATGCGTGTTAAGAATGCTGATGAGCTCAAAAAACTCGATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAACCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCACTGTTCTACATTCGGATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTGGTGTTCTATACCTTGCAGATGGGACTATTTGACTTGGATTTTGACCTCATCGCTAAATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTTGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCGGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E720944" ref_strand="+" ref_description="SGN-E720944 [FC12BC10]">
      <seq>aactatggattcggaagaaggaacccagcaaccccagctagttcttgcacacaaactattccttttgacacatccagatgtcaatgacttggataaagttcgtcttcgtgaaaaagtcttggaagctgtggtctccaatgatatggctccgttgtttgaaaccctagtttcaaaaggggtttttagtttgaatctggacgttcttgatcctatgcgtgttaagaatgctgatgagcttaaaaaactcgatgagaagattgctgatgcagaagaaaatcttggtgaaagtgaagttcgagaagctcatttggctaaatcattgttctacattaggattggtgacaaggggaaagcacttgaacaactcagggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctggtgttctataccttgcaaatgggattatttgacttggattttgacctcatctctaaatgcatagataaggcaaagaaattatttgaaaaggggggtgactgggagagaaagaacaggttgaaggtgtatgaagggttgttctgcatgtccactcgtaaattcaagaaagcagcaaatcttttccttgattctatctcaacttttaccacatatgaacttttcccctatgatactttcatattttatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68242" stop="63575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67942" g_stop="67803" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="255" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="346" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64148" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="492" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64045" g_stop="63875" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="663" r_length="171" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E720944" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67942" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64148"/>
          <exon e_start="64045" e_stop="63875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATAC</genome_strand>
        <mrna_strand>AACTATGGATTCGGAAGAAGGAACCCAGCAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAAAAGTCTTGGAAGCTGTGGTCTCCAATG..........................................................................................................ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGACGTTCTTGATCCTATGCGTGTTAAGAATGCTGATGAGCTTAAAAAACTCGATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGGATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAGGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTGGTGTTCTATACCTTGCAAATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTTGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAAATTCAAGAAAGCAGCAAATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAACTTTTCCCCTATGATACTTTCATATTTTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E699255" ref_strand="+" ref_description="SGN-E699255 [FA09BB08]">
      <seq>gaagaaggaacccagcaaccccagctagttcttgcacacaaactattccttttgacacatccagatgtcaatgacttggataaagttcgtcttcgtgaagaagtcttggaagctgtggtctccaatgatatggctccgttgtttgaaaccctagtttcaaaaggggtttttagtttgaatctggacgttcttgatcctatgcgtgttaagaatgctgatgagcttaaaaaactcgatgagaagattgctgatgcagaagaaaatcttggtgaaagtgaagttcgagaagctcatttggctaaatcattgttctacattaggattggtgacaaggggaaagcacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctggtgttctataccttgcagatgggattatttgacttggattttgacctcatctctaaatgcatagataaggcaaagaaattatttgaaaaggggggtgactgggagagaaagaacaggttgaaggtgtatgaagggttgttctgcatgtccactcgtaacttcccgaaagcaccagatcttttccttgattctatctcaacttttaccacatatgagcttttcccctatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68229" stop="63592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67929" g_stop="67803" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="242" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="333" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64148" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="479" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64045" g_stop="63892" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="633" r_length="154" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E699255" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67929" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64148"/>
          <exon e_start="64045" e_stop="63892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGAT</genome_strand>
        <mrna_strand>GAAGAAGGAACCCAGCAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATG..........................................................................................................ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGACGTTCTTGATCCTATGCGTGTTAAGAATGCTGATGAGCTTAAAAAACTCGATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGGATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTGGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTTGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCCCGAAAGCACCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E698568" ref_strand="+" ref_description="SGN-E698568 [FA06DC01]">
      <seq>cccgaatctagtgaaatctttgagagagaactatggattcggacgaaggaacccaacaaccccagctagttcttgcacacaaactattccttttgacacatccagatgtcaatgacttggataaagttcgtcttcgcgaagaagtcttggaagctgtggtctccaatgatatggctccgttgtttgaaaccctagtttcaaaaggggtttttagtttgaatctggaggttcttgatcctatgcgtgttaagaacgctgatgagcttaaaaaactcgatgacaagattgctgatgcagaagaaaatcttggtgaaagtgaagttcgagaagctcatttggctaaatcattgttctacattagaattggtgacaaggggaaagcacttgaacaactcaaggtgactgacaaaaaaactgttgcagttgggcaaaagatggacctagtgttctataccttgcacatgggattatttgacttggattttgacctcatctctaaatgcatagataaggcaaagaaattattccaaaaggggggtgactgggagagaaagaacacgttgaaggtgtatgaagggttgttctgcatgtccacctcgtaacttcaaaaaagcagcagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68270" stop="63644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67970" g_stop="67803" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="283" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="374" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64148" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="520" r_length="146" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64045" g_stop="63944" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="623" r_length="103" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E698568" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67970" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64148"/>
          <exon e_start="64045" e_stop="63944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCA-CTCGTAACTTCAAGAAAGCAGCAGATCT</genome_strand>
        <mrna_strand>CCCGAATCTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGACGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGCGAAGAAGTCTTGGAAGCTGTGGTCTCCAATG..........................................................................................................ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGACAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCACATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTCCAAAAGGGGGGTGACTGGGAGAGAAAGAACACGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACCTCGTAACTTCAAAAAAGCAGCAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E569867" ref_strand="+" ref_description="SGN-E569867 [14362]">
      <seq>gggaaacctctgagagagaactatggattcggaagaaggaacccaggcaaccccagctagttcttggcacacaaactattccttttgacacatccagatgtcaatgacttgggataaagtttgtctccgtgaagaagtcttggaagctgtggtctccaacgatatggctccgttgtttgaaaccctaggtttcaaaaggggtttttagtttgaatctggaggttcttgatcctatgcgtgttaagaatgctgatgagctcaaaaaactcgatgagaagattgctgatgcagaagaaaaccttggtgaaagtgaagttcgagaagctcatttggctaaatcattgttctacattcggattggtgacaaggggaaagcacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctggtgttctataccttgcagatgggactatttgacttgggattttgacctcatctctaagatgcatagataaggcaaagaaattatttgaaaaggggggtgactgggagaggaagaacaggttgaaggtgtatgaagggttgttctgcatgtccactcggtaattttcaagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68260" stop="63655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67960" g_stop="67803" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="277" r_length="116" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="368" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64148" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="516" r_length="148" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64045" g_stop="63953" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="611" r_length="95" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E569867" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67960" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64148"/>
          <exon e_start="64045" e_stop="63953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCA-ACAACCCCAGCTAGTTCTT-GCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTT-GGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTA-GTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTT-GGATTTTGACCTCATCTCTAA-ATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTC-GTAA-CTTCAAGAAAGC</genome_strand>
        <mrna_strand>GGGAAACCTCTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAGGCAACCCCAGCTAGTTCTTGGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGGATAAAGTTTGTCTCCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAACG..........................................................................................................ATATGGCTCCGTTGTTTGAAACCCTAGGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAATGCTGATGAGCTCAAAAAACTCGATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAACCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTCGGATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTGGTGTTCTATACCTTGCAGATGGGACTATTTGACTTGGGATTTTGACCTCATCTCTAAGATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTTGAAAAGGGGGGTGACTGGGAGAGGAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGGTAATTTTCAAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E273285" ref_strand="+" ref_description="SGN-E273285 [cLEM-24-D12]">
      <seq>tgaaaactagtgaaatctttgagagagaactatggattcggaagaaggaacccaacaaccccagctagttcttgcacacaaactattccttttgacacatccagatgtcaatgacttggataaagttcgtcttcgtgaagaagtcttggaagctgtggtctccaatgatatggctccgttgtttgaaaccctagtttcaaaaggggtttttagtttgaatctggaggttcttgatcctatgcgtgttaagaacgctgatgagcttaaaaaactcgatgagaagattgctgatgcagaagaaaatcttggtgaaagtgaagttcgagaagctcatttggctaaatcattgttctacattagaattggtgacaaggggaaagcacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctagtgttctataccttgcagatgggattatttgacttggattttgacctcatctctaaatgcatagataaggcaaagaaattattcgaaaaggggggtgactgggagagaaagaacaggttgaaggtgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68269" stop="63694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67969" g_stop="67803" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="282" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="373" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64148" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="519" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64045" g_stop="63994" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="571" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E273285" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67969" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64148"/>
          <exon e_start="64045" e_stop="63994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTAT</genome_strand>
        <mrna_strand>TGAAAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATG..........................................................................................................ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E364818" ref_strand="+" ref_description="SGN-E364818 [cLPT-4-E20]">
      <seq>aaaaatagtgaaacctttgagagagaactatggattcggaagaaggaacccagcaaccccagctagttcttgcacacaaactattccttttgacacatccagatgtcaatgacttggataaagttcgtcttcgtgaagaagtcttggaagctgtggtctccaatgatatggctccgttgtttgaaaccctagtttcaaaaggggtttttagtttgaatctggaggttcttgatcctatgcgtgttaagaatgctgatgagcttaaaaaactcgatgagaagattgctgatgcagaagaaaatcttggtgaaagtgaagttcgagaagctcatttggctaaatcattgttctacattaggattggtgacaaggggaaagcacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctggtgttctataccttgcagatgggattatttgacttggattttgacctcatctctaaatgcatagataaggcaaagaaattatttgaaaaggggggtgactgggagagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68267" stop="63712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67967" g_stop="67803" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="280" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="371" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64148" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="517" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64045" g_stop="64012" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="551" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E364818" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67967" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64148"/>
          <exon e_start="64045" e_stop="64012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAG</genome_strand>
        <mrna_strand>AAAAATAGTGAAACCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAGCAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATG..........................................................................................................ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAATGCTGATGAGCTTAAAAAACTCGATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGGATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTGGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTTGAAAAGGGGGGTGACTGGGAGAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E474583" ref_strand="+" ref_description="SGN-E474583 [cSTB-37-C21]">
      <seq>tatacaccctttcgcaagcaaagtatctgaaaaacagggaaacctctgagagagaactatggattcggaagaaggaacccagcaaccccagctagttcttgcacacaaactattccttttgacacatccagatgtcaatgacttggataaagtttgtctccgtgaagaagtcttggaagctgtggtctccaacgatatggctccgttgtttgaaaccctagtttcaaaaggggtttttagtttgaatctggaggttcttgatcctatgcgtgttaagaatgctgatgagctcaaaaaactcgatgagaagattgctgatgcagaagaaaaccttggtgaaagtgaagttcgagaagctcatttggctaaatcattgttctacattcggattggtgacaaggggaaagcacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctggtgttctataccttgcagatgggactatttgacttggattttgacctcatctctaaatgcatagataaggcaaagaaattatttgaaaaggggggtgactggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68296" stop="63720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67996" g_stop="67803" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="309" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="400" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64148" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="546" r_length="146" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64045" g_stop="64020" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="572" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E474583" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67996" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64148"/>
          <exon e_start="64045" e_stop="64020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACACCCTTTCGCAAGCAAAGTATCTGAAAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGG</genome_strand>
        <mrna_strand>TATACACCCTTTCGCAAGCAAAGTATCTGAAAAACAGGGAAACCTCTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAGCAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTTGTCTCCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAACG..........................................................................................................ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAATGCTGATGAGCTCAAAAAACTCGATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAACCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTCGGATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTGGTGTTCTATACCTTGCAGATGGGACTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTTGAAAAGGGGGGTGACTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E487755" ref_strand="+" ref_description="SGN-E487755 [cSTE-26-B21]">
      <seq>gagagagaactatggattcggaagaaggaacccagcaaccccagctagttcttgcacacaaactattccttttgacacatccagatgtcaatgacttggataaagtttgtctccgtgaagaagtcttggaagctgtggtctccaacgatatggctccgttgtttgaaaccctagtttcaaaaggggtttttagtttgaatctggaggttcttgatcctatgcgtgttaagaatgctgatgagctcaaaaaactcgatgagaagattgctgatgcagaagaaaaccttggtgaaagtgaagttcgagaagctcatttggctaaatcattgttctacattcggattggtgacaaggggaaagcacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctggtgttctataccttgcagatgggactatttgacttggattttgacctcatctctaaatgcatagataaggcaaagaaattatttgaaaaggggggtgactggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68249" stop="63720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67949" g_stop="67803" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="262" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="353" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64148" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="499" r_length="146" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64045" g_stop="64020" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="525" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E487755" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67949" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64148"/>
          <exon e_start="64045" e_stop="64020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGG</genome_strand>
        <mrna_strand>GAGAGAGAACTATGGATTCGGAAGAAGGAACCCAGCAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTTGTCTCCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAACG..........................................................................................................ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAATGCTGATGAGCTCAAAAAACTCGATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAACCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTCGGATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTGGTGTTCTATACCTTGCAGATGGGACTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTTGAAAAGGGGGGTGACTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E205526" ref_strand="+" ref_description="SGN-E205526 [cLEC-28-P21]">
      <seq>gcaagcaaagtatctgaaaactagtgaaatctttgagagagaactatggattcggaagaaggaacccaacaaccccagctagttcttgcacacaaactattccttttgacacatccagatgtcaatgacttggataaagttcgtcttcgtgaagaagtcttggaagctgtggtctccaatgatatggctccgttgtttgaaaccctagtttcaaaaggggtttttagtttgaatctggaggttcttgatcctatgcgtgttaagaacgctgatgagcttaaaaaactcgatgagaagattgctgatgcagaagaaaatcttggtgaaagtgaagttcgagaagctcatttggctaaatcattgttctacattagaattggtgacaaggggaaagcacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctagtgttctataccttgcagatgggattatttgacttggattttgacctcatctctaaatgcatagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68283" stop="63859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67983" g_stop="67803" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="296" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="387" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64159" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="522" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E205526" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67983" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCAAAGTATCTGAAAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGAT</genome_strand>
        <mrna_strand>GCAAGCAAAGTATCTGAAAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATG..........................................................................................................ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E312068" ref_strand="+" ref_description="SGN-E312068 [cTOA-11-A12]">
      <seq>gtttttttttttttacaccctttcgcaagcaaagtatctgaaaactagtgaaatctttgagagagaactatggattcggaagaaggaacccaacaaccccagctagttcttgcacacaaactattccttttgacacatccagatgtcaatgacttggataaagttcgtcttcgtgaagaagtcttggaagctgtggtctccaatgatatggctccgttgtttgaaaccctagtttcaaaaggggtttttagtttgaatctggaggttcttgatcctatgcgtgttaagaacgctgatgagcttaaaaaactcgatgagaagattgctgatgcagaagaaaatcttggtgaaagtgaagttcgagaagctcatttggctaaatcattgttctacattagaattggtgacaaggggaaagcacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctagtgttctataccttgcagatgggattatttgactgggattttgacctcatctctaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68298" stop="63865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67998" g_stop="67803" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="205" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="320" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="411" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64165" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="540" r_length="129" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E312068" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67998" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACACCCTTTCGCAAGCAAAGTATCTGAAAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGC</genome_strand>
        <mrna_strand>TTTTTACACCCTTTCGCAAGCAAAGTATCTGAAAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATG..........................................................................................................ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTGGGATTTTGACCTCATCTCTAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E478437" ref_strand="+" ref_description="SGN-E478437 [cSTD-4-J10]">
      <seq>aaaacagtgaaacctctcagagagaactatggattcggaagaaggaacccagcaacctcagctagttcttgcacacaaactattccttttgacacatccagatgtcaatgacttggataaagttcgtctccgtgaagaagtcttggaagctgtggtctccaatgatatggctccgttgtttgaaaccctagtttcaaaaggggtttttagtttgaatctggaggttcttgatcccatgcgtgttaagaatgctgatgagctcaaaaaactcgatgagaagattgctgatgcagaagaaaaccttggtgaaagtgaagttcgagaagctcatttggctaaatcactgttctacattcggattggtgacaaggggaaagcacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctggtgttctataccttgcagatgggactatttgacttggattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68267" stop="63881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67967" g_stop="67803" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="279" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="370" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64181" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="483" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E478437" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67967" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGA</genome_strand>
        <mrna_strand>AAAAC-AGTGAAACCTCTCAGAGAGAACTATGGATTCGGAAGAAGGAACCCAGCAACCTCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTCCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATG..........................................................................................................ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCCATGCGTGTTAAGAATGCTGATGAGCTCAAAAAACTCGATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAACCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCACTGTTCTACATTCGGATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTGGTGTTCTATACCTTGCAGATGGGACTATTTGACTTGGATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E243837" ref_strand="+" ref_description="SGN-E243837 [cLED-35-E9]">
      <seq>gcaagcaaagtatctgaaaactagtgaaatctttgagagagaactatggattcggaagaaggaacccaacaaccccagctagttcttgcacacaaactattccttttgacacatccagatgtcaatgacttggataaagttcgtcttcgtgaaaaagtcttggaagctgtggtctccaatgatatggctccgttgtttgaaaccctagtttcaaaaggggtttttagtttgaatctggaggttcttgatcctatgcgtgttaagaacgctgatgagcttaaaaaactcnatgagaagattgctgatgcagaagaaaatcttggtgaaagtgaagttcgagaagctcatttggctaaatcattgttctacattagaattggtgacaaggggaaagcacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctagtgttctataccttgcagatgggattatttgacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68283" stop="63889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67983" g_stop="67803" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="296" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="387" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64189" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="492" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E243837" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67983" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCAAAGTATCTGAAAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTG</genome_strand>
        <mrna_strand>GCAAGCAAAGTATCTGAAAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAAAAGTCTTGGAAGCTGTGGTCTCCAATG..........................................................................................................ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCNATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E202698" ref_strand="+" ref_description="SGN-E202698 [cLEC-19-J10]">
      <seq>gaaaactagtgaaatctttgagagagaactatggattcggaagaaggaacccaacaaccccagctagttcttgcacacaaactattccttttgacacatccagatgtcaatgacttggataaagttcgtcttcgtgaagaagtcttggaagctgtggtctccaatgatatggctccgttgtttgaaaccctagtttcaaaaggggtttttagtttgaatctggaggttcttgatcctatgcgtgttaagaacgctgatgagcttaaaaaactcgatgagaagattgctgatgcagaagaaaatcttggtgaaagtgaagttcgagaagctcatttggctaaatcattgttctacattagaattggtgacaaggggaaagcacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctagtgttctataccttgcagatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68268" stop="63901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67968" g_stop="67803" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="281" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="372" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64201" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="465" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E202698" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67968" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGA</genome_strand>
        <mrna_strand>GAAAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATG..........................................................................................................ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E440451" ref_strand="+" ref_description="SGN-E440451 [cSTA-16-J2]">
      <seq>agaactatggattcggaagaaggaacccagcaaccccagctagttcttgcacacaaactattccttttgacacatccagatgtcaatgacttggataaagtttgtctccgtgaagaagtcttggaagctgtggtctccaacgatatggctccgttgtttgaaaccctagtttcaaaaggggtttttagtttgaatctggaggttcttgatcctatgcgtgttaagaatgctgatgagctcaaaaaactcgatgagaagattgctgatgcagaagaaaaccttggtgaaagtgaagttcgagaagctcatttggctaaatcattgttctacattcggattggtgacaaggggaaagcacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctggtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68244" stop="63920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67944" g_stop="67803" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="257" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="348" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64220" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="422" r_length="74" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E440451" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67944" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTT</genome_strand>
        <mrna_strand>AGAACTATGGATTCGGAAGAAGGAACCCAGCAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTTGTCTCCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAACG..........................................................................................................ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAATGCTGATGAGCTCAAAAAACTCGATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAACCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTCGGATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTGGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E473431" ref_strand="+" ref_description="SGN-E473431 [cSTB-32-I6]">
      <seq>cctcttgccgctgaaaaacagtgaaacctctcatagagaactatggattcggaagaaggaacccatcgacctcagctagttcttgcacacaaactattccttttgacacatccatatgtcaatgacttggataaagttcgtctccgtgaagaagtcttggaagctgtggtctccaatgatatggctccgttgattgaaaccctagcttcaaaaggggtttttagtttgaatctggaggttcttgatcccatgcgtgttaagaatgctgatgagctgaaaaaactcgatgagaagattgctgatgcagaagaaaaccttggtgaaagtgaagttagagaagctcatttggctcaatcattgttctacattcggattggtgacaaggggaaagcacttgaacaactcagggtgactgagaaaaaaactgttgcagttgggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68270" stop="63938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67970" g_stop="67803" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="178" r_length="168" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="293" r_length="115" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.890" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="384" r_length="91" r_score="0.945"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64238" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="440" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E473431" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67970" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCA</genome_strand>
        <mrna_strand>CTGAAAAACAGTGAAACCTCTCATAGAGAACTATGGATTCGGAAGAAGGAACCCATCGACCTCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCATATGTCAATGACTTGGATAAAGTTCGTCTCCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATG..........................................................................................................ATATGGCTCCGTTGATTGAAACCCTAGCTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCCATGCGTGTTAAGAATGCTGATGAGCTGAAAAAACTCGATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAACCTTGGTGAAAGTGAAGTTAGAGAAGCTCATTTGGCTCAATCATTGTTCTACATTCGGATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAGGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E367110" ref_strand="+" ref_description="SGN-E367110 [cLPT-5-O20]">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="+" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="70936" stop="72021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71236" g_stop="71721" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="+" ref_id="SGN-E367110" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71236" e_stop="71721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCACAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCATTTTGGGTCCTTCCCAGCCACCCCTAAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAATCCAAAACCTTTTAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGACTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCTTGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGACAGTATTTCCAGGTACAAGACTCGTTTGGTTGCTAAAGGCTACAATTAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E245978" ref_strand="+" ref_description="SGN-E245978 [cLEF-51-O12]">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="+" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="71362" stop="72255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71662" g_stop="71955" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="+" ref_id="SGN-E245978" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71662" e_stop="71955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGGCTACAATTAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCTTGTTATTCGGCAGAAAACCATTCGCCTGGTACTGTCACTTGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAAC--TAT-C-T-A-G-AACCACCGAGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCTAGCAAGCCCCCCGTGCTTGATACACACGTTTGAAAATATT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E712102" ref_strand="+" ref_description="SGN-E712102 [FB03DF03]">
      <seq>catcattgacatatccgaaaatggaagtcaaggaactgatcattatgacagcattaaacaaagcatggtcatcccaagtagctgcaaacatacatcacaagagaaggtaagtcactgtggatttcactctacaactatccctactgatgaagaactagcgaagctggttagaagatgttgcgattacagaccatgccacaacgtccgttctggctgcagaaatcatgctacagaatgtggtccaaccacccgatcaacaatcaatatcttacgggacaaccatcatcatcatcatctagactgcagtggtcgtaaggtttgttcgccaattgagaagagacacattggtggatgctgtgagagcttcagaaaagaatgttgccccaagaacattaatcattttgcatcaagttttggaggaggtttatcagaaattgtattagagtaagatgcaatcttaaaagtgtaaatatgttgcaacttttctacctattttatcttcaagaagctgagatgttattttatatgaacttagctattaccatggcttgtatactaatcctaaaaatggtttgtgtattatttgttgaattctaacaatgttgggaacttcaatgtcatttgcatgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="107733" stop="106503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107433" g_stop="106795" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E712102" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107433" e_stop="106795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATTGACATATCCGAAAATGGAAGTCAAGGAACTGATCATTGTGACAGCATTAAACAAAGCATGGTCATCCCATGTAGCTGCAAACATACACCACAAGAGAAGGTAAGTCACTGTGGATTTCACTCTACAACTATCCCTACTGATGAAGAACTAGCGAAGCTGGTTAGAAGATGTTGCGATTACAGACCATGCCACAACGTCCGTTCTGGCTGCAGAAATCATGCTACAGAATGTGGTCCAACCACCCGATCAACCATCAATATCTTACGGGACAACCATCATCATCATCATCTAGACTGCAGTGGTCGTAAGGTTTGTTCGCCAATTGAGAAGAGACACATTGGTGGATGCTGTGAGAGCTTCAGAAAAGAATGTTGCCCCAAGAACATTAATCATTTTGCATCAAGTTTTGGAGGAGGTTTATCAGAAATTGTATTAGAGTAAGATGCAATCTTAAAAGTGTAAATATGTTGCAACTTTTCTACCTATTTTATCTTCAAGAAGCTGAGATGCTATTTTGTATGAACTTAGCTATTACCATGGCTTGTATACTAATCCTAAAAATGGTTTGTG---TATTTGTTGAATTCTAACAAAGTTGGGAACTTCAATGTCATTTGCATGAAAAAATCAGCTCA</genome_strand>
        <mrna_strand>CATCATTGACATATCCGAAAATGGAAGTCAAGGAACTGATCATTATGACAGCATTAAACAAAGCATGGTCATCCCAAGTAGCTGCAAACATACATCACAAGAGAAGGTAAGTCACTGTGGATTTCACTCTACAACTATCCCTACTGATGAAGAACTAGCGAAGCTGGTTAGAAGATGTTGCGATTACAGACCATGCCACAACGTCCGTTCTGGCTGCAGAAATCATGCTACAGAATGTGGTCCAACCACCCGATCAACAATCAATATCTTACGGGACAACCATCATCATCATCATCTAGACTGCAGTGGTCGTAAGGTTTGTTCGCCAATTGAGAAGAGACACATTGGTGGATGCTGTGAGAGCTTCAGAAAAGAATGTTGCCCCAAGAACATTAATCATTTTGCATCAAGTTTTGGAGGAGGTTTATCAGAAATTGTATTAGAGTAAGATGCAATCTTAAAAGTGTAAATATGTTGCAACTTTTCTACCTATTTTATCTTCAAGAAGCTGAGATGTTATTTTATATGAACTTAGCTATTACCATGGCTTGTATACTAATCCTAAAAATGGTTTGTGTATTATTTGTTGAATTCTAACAATGTTGGGAACTTCAATGTCATTTGCATGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E435510" ref_strand="+" ref_description="SGN-E435510 [STM-61-N5]">
      <seq>tacataaatgggtcccaactttgttagaattcccaaatacacaaaccatttttaggattaatacacaagccattgtaatagctaagttcatacaaaatagcatctcagcttcttgaagataaaataggtagaaaagttgcaacatatttacactttaagattgcatcttactctaaaacaatttctgataaacctcctccaaaacttgatgcaaaatgattgttcttggggcaacattcttttctgaaggtttcacagcatccaccaatgtgtctcttctcaattggcgaacaaaccttacgaccactgcagtctagatgatgatgatggttgtcccgtaagatattgatggttgatcgggtggttggaccacattctgcagcatgctttctgtagccagagcggacttcgtggcatggtctataattgcaacatcttctaaccagcttggctagttcttcatcagtaggggtagttgtagagtgaaatccacagtgacttacctgatcttgtggtgtatgtttgcagctacttggaatgaccatgctttgtttaatgctgtcacaatgagcagttccattttcggatatgtcaatgctatggtcctgaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="+" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="106527" stop="107746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106818" g_stop="107446" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="+" ref_id="SGN-E435510" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.026" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106818" e_stop="107446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATTGA-AGTTCCCAACTTTGTTAGAATTCAACAAATACACAAACCATTTTTAGGATTAGTATACAAGCCATGGTAATAGCTAAGTTCATACAAAATAGCATCTCAGCTTCTTGAAGATAAAATAGGTAGAAAAGTTGCAACATATTTACACTTTTAAGATTGCATCTTACTCTAATACAATTTCTGATAAACCTCCTCCAAAACTTGATGCAAAATGATTAATGTTCTTGGGGCAACATTCTTTTCTGAAGCTCTCACAGCATCCACCAATGTGTCTCTTCTCAATTGGCGAACAAACCTTACGACCACTGCAGTCTAGATGATGATGATGATGGTTGTCCCGTAAGATATTGATGGTTGATCGGGTGGTTGGACCACATTCTGTAGCATGATTTCTGCAGCCAGAACGGACGTTGTGGCATGGTCTGTAATCGCAACATCTTCTAACCAGCTTCGCTAGTTCTTCATCAGTAGGGATAGTTGTAGAGTGAAATCCACAGTGACTTACCTTCTCTTGTGGTGTATGTTTGCAGCTACATGGGATGACCATGCTTTGTTTAATGCTGTCACAATGATCAGTTCCTTGACTTCCATTTTCGGATATGTCAATGCTGTGGTCCTGAACTG</genome_strand>
        <mrna_strand>TACATAAATGGGTCCCAACTTTGTTAGAATTC-CCAAATACACAAACCATTTTTAGGATTAATACACAAGCCATTGTAATAGCTAAGTTCATACAAAATAGCATCTCAGCTTCTTGAAGATAAAATAGGTAGAAAAGTTGCAACATATTTACAC-TTTAAGATTGCATCTTACTCTAAAACAATTTCTGATAAACCTCCTCCAAAACTTGATGCAAAATGA-T--TGTTCTTGGGGCAACATTCTTTTCTGAAGGTTTCACAGCATCCACCAATGTGTCTCTTCTCAATTGGCGAACAAACCTTACGACCACTGCAGTCT--A-GATGATGATGATGGTTGTCCCGTAAGATATTGATGGTTGATCGGGTGGTTGGACCACATTCTGCAGCATGCTTTCTGTAGCCAGAGCGGACTTCGTGGCATGGTCTATAATTGCAACATCTTCTAACCAGCTTGGCTAGTTCTTCATCAGTAGGGGTAGTTGTAGAGTGAAATCCACAGTGACTTACCTGATCTTGTGGTGTATGTTTGCAGCTACTTGGAATGACCATGCTTTGTTTAATGCTGTCACAATG---AG---C---AGTTCCATTTTCGGATATGTCAATGCTATGGTCCTGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E203314" ref_strand="+" ref_description="SGN-E203314 [cLEB-3-H7](-)">
      <seq>ttcactcgacaactatccttactgatgaagaactagcgaagctgtttagaagatgttgcgattacagaccatgccacaacgtccgttctggctgcagaaatcatgctacagaatctggtccaaccaccctatcaaccatcaatatcttacgggacaaccatcatcatcatcatctagactgcagtggtcgtaaggcttgttcgccaattgagaagagacacattggtggatgctgtgagagcttcagaaaagaatgttgccccaagaacattaatcattttgcatcaagttttggaggaggtttatcagaaattgtattcgagtaagatgcaatcttaaaagtgtaaatatgttgcaacttttctacctattttatcttcaagaagctgagatgctattttgtatgaacttagctattaccatggcttgtatactaatcctaaaaatggtttgtgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="107611" stop="106555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107311" g_stop="106856" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="457" polyA_stop="474"/>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E203314" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107311" e_stop="106856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCTACAACTATCCCTACTGATGAAGAACTAGCGAAGCTGGTTAGAAGATGTTGCGATTACAGACCATGCCACAACGTCCGTTCTGGCTGCAGAAATCATGCTACAGAATGTGGTCCAACCACCCGATCAACCATCAATATCTTACGGGACAACCATCATCATCATCATCTAGACTGCAGTGGTCGTAAGGTTTGTTCGCCAATTGAGAAGAGACACATTGGTGGATGCTGTGAGAGCTTCAGAAAAGAATGTTGCCCCAAGAACATTAATCATTTTGCATCAAGTTTTGGAGGAGGTTTATCAGAAATTGTATTAGAGTAAGATGCAATCTTAAAAGTGTAAATATGTTGCAACTTTTCTACCTATTTTATCTTCAAGAAGCTGAGATGCTATTTTGTATGAACTTAGCTATTACCATGGCTTGTATACTAATCCTAAAAATGGTTTGTGT</genome_strand>
        <mrna_strand>TTCACTCGACAACTATCCTTACTGATGAAGAACTAGCGAAGCTGTTTAGAAGATGTTGCGATTACAGACCATGCCACAACGTCCGTTCTGGCTGCAGAAATCATGCTACAGAATCTGGTCCAACCACCCTATCAACCATCAATATCTTACGGGACAACCATCATCATCATCATCTAGACTGCAGTGGTCGTAAGGCTTGTTCGCCAATTGAGAAGAGACACATTGGTGGATGCTGTGAGAGCTTCAGAAAAGAATGTTGCCCCAAGAACATTAATCATTTTGCATCAAGTTTTGGAGGAGGTTTATCAGAAATTGTATTCGAGTAAGATGCAATCTTAAAAGTGTAAATATGTTGCAACTTTTCTACCTATTTTATCTTCAAGAAGCTGAGATGCTATTTTGTATGAACTTAGCTATTACCATGGCTTGTATACTAATCCTAAAAATGGTTTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E305931" ref_strand="+" ref_description="SGN-E305931 [cLEY-17-N20]">
      <seq>cattgtgacagcattaaacaaagcatggggggtcccatgtagctgcaaacatacaccacaagagaaggtaagtcactgtggatttcactctacaactatccctactgatgaagaactaaccaagctgcttagaagatgttgcgaacacagaccatgccacaacgctcttgctggctgcgcgaaatcatgctacagaatgtggtccaaccacccgatcaaccatcaatatcttacgggacaaccatcatcatcatcatctagactgcagtggtcgtaaggtttgttcgccaattgagaagagacacattggtggatgctgtgagagcttcagaaaagaatgttgccccaagaacattaatcattttgcatcaagttttggaggaggtttatcaaaaattgtattagagtaagatgcaatcttaaaagtgtaaatatgttgcaacttttctacctattttatcttcaagaaggtgagatgctattttgtatgaacttagctattaccatggcttgtatactaatcctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="107693" stop="106567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107393" g_stop="106867" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E305931" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107393" e_stop="106867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTGACAGCATTAAACAAAGCAT-GGTCATCCCATGTAGCTGCAAACATACACCACAAGAGAAGGTAAGTCACTGTGGATTTCACTCTACAACTATCCCTACTGATGAAGAACTAGCGAAGCTGGTTAGAAGATGTTGCGATTACAGACCATGCCACAACGTCCGTTCTGGCTGC-AGAAATCATGCTACAGAATGTGGTCCAACCACCCGATCAACCATCAATATCTTACGGGACAACCATCATCATCATCATCTAGACTGCAGTGGTCGTAAGGTTTGTTCGCCAATTGAGAAGAGACACATTGGTGGATGCTGTGAGAGCTTCAGAAAAGAATGTTGCCCCAAGAACATTAATCATTTTGCATCAAGTTTTGGAGGAGGTTTATCAGAAATTGTATTAGAGTAAGATGCAATCTTAAAAGTGTAAATATGTTGCAACTTTTCTACCTATTTTATCTTCAAGAAGCTGAGATGCTATTTTGTATGAACTTAGCTATTACCATGGCTTGTATACTAATCCTAAAA</genome_strand>
        <mrna_strand>CATTGTGACAGCATTAAACAAAGCATGGGGGGTCCCATGTAGCTGCAAACATACACCACAAGAGAAGGTAAGTCACTGTGGATTTCACTCTACAACTATCCCTACTGATGAAGAACTAACCAAGCTGCTTAGAAGATGTTGCGAACACAGACCATGCCACAACGCTCTTGCTGGCTGCGCGAAATCATGCTACAGAATGTGGTCCAACCACCCGATCAACCATCAATATCTTACGGGACAACCATCATCATCATCATCTAGACTGCAGTGGTCGTAAGGTTTGTTCGCCAATTGAGAAGAGACACATTGGTGGATGCTGTGAGAGCTTCAGAAAAGAATGTTGCCCCAAGAACATTAATCATTTTGCATCAAGTTTTGGAGGAGGTTTATCAAAAATTGTATTAGAGTAAGATGCAATCTTAAAAGTGTAAATATGTTGCAACTTTTCTACCTATTTTATCTTCAAGAAGGTGAGATGCTATTTTGTATGAACTTAGCTATTACCATGGCTTGTATACTAATCCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E709616" ref_strand="+" ref_description="SGN-E709616 [FA52CD04]">
      <seq>gagatataactgacatatcaaaaactggaatccaggaaacttctcattgtgatagcaccaatcaaacatgccaaactgtaatttcaggtagacacaacctttactcctacaataaaacgtttgattaagcagtgctgtatcgatcatgtctactaatcaagatttgagaatttcaggctcaatgatctttggagataataagagcctggactctgtagacatccatgagtgtcattcacatgctcatccaccccacaaggaggaaccacatcattctgttggacatggctgttcggacaaggaacacgatcattcacatccagagaaagcatttgacagttgtgcaacacaagaatgttgtttttcagttcaggaccacagcattgacatatccgaaaatggaagtcaaggaactgatcattgtgacagcattaaacaaagcatggtcatcccatgtagctgcaaacatacaccacaagagaaggtaagtcactgtggatttcactctacaactatccctactgatgaagaactagcgaagctggttagaagatgttgcgattacagaccatgccacaacgtccgttctggctgcagaaatcatgctacagaatgtggtccaaccacccgatcaaccatcaatatcttacgggacaaccatcatcatcatcatctagactgcagtggtcgtaaggtttgttcgccaattgagaagagacacattggtggatgctgtgaaagcttcagaaaaaaatgttgccccaagaacattaatcattttgcatcaagttttggaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="108111" stop="106712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107811" g_stop="107012" g_length="800"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="800" r_length="800" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E709616" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107811" e_stop="107012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATATAACTGACATATCAAAAACTGGAATCCAGGAAACTTCTCATTGTGATAGCACCAATCAAACATGCCAAACTGTAATTTCAGGTAGACACAACCTTTACTCCTACAATAAAACGTTTGATTAAGCAGTGCTGTATCGATCATGTCTACTAATCAAGATTTGAGAATTTCAGGCTCAATGATCTTTGGAGATAATAAGAGCCTGGACTCTGTAGACATCCATGAGTGTCATTCACATGCTCATCCACCCCACAAGGAGGAACCACATCATTCTGTTGGACATGGCTGTTCGGACAAGGAACACGATCATTCACATCCAGAGAAAGCATTTGACAGTTGTGCAACACAAGAATGTTGTTTTTCAGTTCAGGACCACAGCATTGACATATCCGAAAATGGAAGTCAAGGAACTGATCATTGTGACAGCATTAAACAAAGCATGGTCATCCCATGTAGCTGCAAACATACACCACAAGAGAAGGTAAGTCACTGTGGATTTCACTCTACAACTATCCCTACTGATGAAGAACTAGCGAAGCTGGTTAGAAGATGTTGCGATTACAGACCATGCCACAACGTCCGTTCTGGCTGCAGAAATCATGCTACAGAATGTGGTCCAACCACCCGATCAACCATCAATATCTTACGGGACAACCATCATCATCATCATCTAGACTGCAGTGGTCGTAAGGTTTGTTCGCCAATTGAGAAGAGACACATTGGTGGATGCTGTGAGAGCTTCAGAAAAGAATGTTGCCCCAAGAACATTAATCATTTTGCATCAAGTTTTGGAGGAG</genome_strand>
        <mrna_strand>GAGATATAACTGACATATCAAAAACTGGAATCCAGGAAACTTCTCATTGTGATAGCACCAATCAAACATGCCAAACTGTAATTTCAGGTAGACACAACCTTTACTCCTACAATAAAACGTTTGATTAAGCAGTGCTGTATCGATCATGTCTACTAATCAAGATTTGAGAATTTCAGGCTCAATGATCTTTGGAGATAATAAGAGCCTGGACTCTGTAGACATCCATGAGTGTCATTCACATGCTCATCCACCCCACAAGGAGGAACCACATCATTCTGTTGGACATGGCTGTTCGGACAAGGAACACGATCATTCACATCCAGAGAAAGCATTTGACAGTTGTGCAACACAAGAATGTTGTTTTTCAGTTCAGGACCACAGCATTGACATATCCGAAAATGGAAGTCAAGGAACTGATCATTGTGACAGCATTAAACAAAGCATGGTCATCCCATGTAGCTGCAAACATACACCACAAGAGAAGGTAAGTCACTGTGGATTTCACTCTACAACTATCCCTACTGATGAAGAACTAGCGAAGCTGGTTAGAAGATGTTGCGATTACAGACCATGCCACAACGTCCGTTCTGGCTGCAGAAATCATGCTACAGAATGTGGTCCAACCACCCGATCAACCATCAATATCTTACGGGACAACCATCATCATCATCATCTAGACTGCAGTGGTCGTAAGGTTTGTTCGCCAATTGAGAAGAGACACATTGGTGGATGCTGTGAAAGCTTCAGAAAAAAATGTTGCCCCAAGAACATTAATCATTTTGCATCAAGTTTTGGAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/wt8cILNx5A" ref_id="SGN-E591737" ref_strand="+" ref_description="SGN-E591737 [45456]">
      <seq>gtcatgcggaaatcacaaatgccaagactctgcaaccgaacaaggtattcattcacttactgatcaactctctgaggaaaagatttcggagcagaaaagcttggttttagaatcaaatcatgatcttagtcatggctgctgtgaagaggaacatgaccatcatccaaatttagacaaagcatatgacagttgtgcattacaagaatgttgttattcggctcaaggagatataaatgacatatcagaaactggaatccaggaaacttctcaatgtgatagcactaatcaaacatgccaaactgtaatttcaggctcaatgatctgtggagataataagagcctggactctgtagacatccatgggtgtcattcacatgctcatccaccccacaaggaggaaccacatcattctgttggacatggctgttcggacaaggaacacgatcattcacatccagagaaatcatacgacagttatgcaacacaagattgttgtttttcagttcaggaccatagcattgacatatccgaaaatggaactgctcattgtgacagcattaaacaaagcatggtcattccaagtagctgcaaacatacaccacaagatcaggtaagtcactgtggatttcactctacaactacccctactgatgaagaactagccaagctggttagaagatgttgcaattatagaccatgccacgaagtccgctctggctacagaaagcatgctgcagaatgtggtccaaaccaccgatcaaccatcactatctttacgggacaaccatcatcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-68I2D/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="108125" stop="106843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108035" g_stop="107725" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107724" i_stop="107636" i_length="89">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107635" g_stop="107143" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="796" r_length="485" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-E591737" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108035" e_stop="107725"/>
          <exon e_start="107635" e_stop="107143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATGCGGAAATCACAAGTGCCAAGACTCTGCAACCGAGCACGGTGTTCATTCACTTACTGATCCACTCTCCGAGGAAGTGATTCTGAAGCAGAAAATCTTGGTTTTGGAATCAAATCATGATCTTAGTCATGGCTGCTGTGAAGAGGAACATGATCATCATCCAAATTTAGACAAAGCATATGACAGTTGTGCATTACAAGAATGTCATTATTCGGTTCAAGGAGATATAACTGACATATCAAAAACTGGAATCCAGGAAACTTCTCATTGTGATAGCACCAATCAAACATGCCAAACTGTAATTTCAGGTAGACACAACCTTTACTCCTACAATAAAACGTTTGATTAAGCAGTGCTGTATCGATCATGTCTACTAATCAAGATTTGAGAATTTCAGGCTCAATGATCTTTGGAGATAATAAGAGCCTGGACTCTGTAGACATCCATGAGTGTCATTCACATGCTCATCCACCCCACAAGGAGGAACCACATCATTCTGTTGGACATGGCTGTTCGGACAAGGAACACGATCATTCACATCCAGAGAAAGCATTTGACAGTTGTGCAACACAAGAATGTTGTTTTTCAGTTCAGGACCACAGCATTGACATATCCGAAAATGGAAGTCAAGGAACTGATCATTGTGACAGCATTAAACAAAGCATGGTCATCCCATGTAGCTGCAAACATACACCACAAGAGAAGGTAAGTCACTGTGGATTTCACTCTACAACTATCCCTACTGATGAAGAACTAGCGAAGCTGGTTAGAAGATGTTGCGATTACAGACCATGCCACAACGTCCGTTCTGGCTGCAGAAATCATGCTACAGAATGTGGTCCAACCACCCGATCAACCATCAATATC-TTACGGGACAACCATCATCATCA</genome_strand>
        <mrna_strand>GTCATGCGGAAATCACAAATGCCAAGACTCTGCAACCGAACAAGGTATTCATTCACTTACTGATCAACTCTCTGAGGAAAAGATTTCGGAGCAGAAAAGCTTGGTTTTAGAATCAAATCATGATCTTAGTCATGGCTGCTGTGAAGAGGAACATGACCATCATCCAAATTTAGACAAAGCATATGACAGTTGTGCATTACAAGAATGTTGTTATTCGGCTCAAGGAGATATAAATGACATATCAGAAACTGGAATCCAGGAAACTTCTCAATGTGATAGCACTAATCAAACATGCCAAACTGTAATTTCAG.........................................................................................GCTCAATGATCTGTGGAGATAATAAGAGCCTGGACTCTGTAGACATCCATGGGTGTCATTCACATGCTCATCCACCCCACAAGGAGGAACCACATCATTCTGTTGGACATGGCTGTTCGGACAAGGAACACGATCATTCACATCCAGAGAAATCATACGACAGTTATGCAACACAAGATTGTTGTTTTTCAGTTCAGGACCATAGCATTGACATATCCG--AA---AA-T---GGAACTGCTCATTGTGACAGCATTAAACAAAGCATGGTCATTCCAAGTAGCTGCAAACATACACCACAAGATCAGGTAAGTCACTGTGGATTTCACTCTACAACTACCCCTACTGATGAAGAACTAGCCAAGCTGGTTAGAAGATGTTGCAATTATAGACCATGCCACGAAGTCCGCTCTGGCTACAGAAAGCATGCTGCAGAATGTGGTCCAAACCACCGATCAACCATCACTATCTTTACGGGACAACCATCATCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>101</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="543" PGL_stop="748"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="543" e_stop="748"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="543" e_stop="748" e_length="206"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="543" stop="748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229109" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGTATAATTGTAAATTATATTGATGGTTGACACTTTGAGGTAGAAGAGAACACCACACAAGGAAACAATTTATTTACTTTTTTTTAAAAATGCATTATTTCATACACAAGTACAATAGGAAGTATTTCATAACTAATGTCTTGCACAAATTCAGTATACAATTTGATGGAATACTCATAAATGAAAAAAAATATTAAATTTCCT</gDNA_template>
            <first_frame> *  V  *  L  *  I  I  L  M  V  D  T  L  R  *  K  R  T  P  H  K  E  T  I  Y  L  L  F  F  K  N  A  L  F  H  T  Q  V  Q  *  E  V  F  H  N  *  C  L  A  Q  I  Q  Y  T  I  *  W  N  T  H  K  *  K  K  I  L  N  F   </first_frame>
            <second_frame>  K  Y  N  C  K  L  Y  *  W  L  T  L  *  G  R  R  E  H  H  T  R  K  Q  F  I  Y  F  F  L  K  M  H  Y  F  I  H  K  Y  N  R  K  Y  F  I  T  N  V  L  H  K  F  S  I  Q  F  D  G  I  L  I  N  E  K  K  Y  *  I  S  </second_frame>
            <third_frame>   S  I  I  V  N  Y  I  D  G  *  H  F  E  V  E  E  N  T  T  Q  G  N  N  L  F  T  F  F  *  K  C  I  I  S  Y  T  S  T  I  G  S  I  S  *  L  M  S  C  T  N  S  V  Y  N  L  M  E  Y  S  *  M  K  K  N  I  K  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0030C22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="21158" PGL_stop="15066"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21158" e_stop="20845"/>
            <exon e_start="20514" e_stop="20368"/>
            <exon e_start="20264" e_stop="20202"/>
            <exon e_start="15667" e_stop="15501"/>
            <exon e_start="15396" e_stop="15066"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.925" acc_prob="0.471" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21158" e_stop="20845" e_length="314"/>
          </exon>
          <intron i_serial="1" don_prob="0.925" acc_prob="0.471">
            <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20514" e_stop="20368" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20264" e_stop="20202" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="20201" i_stop="15668" i_length="4534"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15667" e_stop="15501" e_length="167"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15500" i_stop="15397" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15396" e_stop="15066" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21158" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21148" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21145" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15501"/>
              <exon start="15396" stop="15177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21141" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15501"/>
              <exon start="15396" stop="15279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21141" stop="20845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21139" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15501"/>
              <exon start="15396" stop="15295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21136" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15501"/>
              <exon start="15396" stop="15334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21135" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15501"/>
              <exon start="15396" stop="15390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21135" stop="20845"/>
              <exon start="20514" stop="20441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21133" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21131" stop="20880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21130" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21129" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15501"/>
              <exon start="15396" stop="15383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21128" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21123" stop="20845"/>
              <exon start="20514" stop="20439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21122" stop="20845"/>
              <exon start="20514" stop="20395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21118" stop="20845"/>
              <exon start="20514" stop="20427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21069" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21024" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15501"/>
              <exon start="15396" stop="15279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21007" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20464" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15501"/>
              <exon start="15396" stop="15066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20464" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15501"/>
              <exon start="15396" stop="15209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15608" stop="15501"/>
              <exon start="15396" stop="15068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230345" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTCTCCAAGTACACTAGAGAGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG : ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG : ATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAG : CTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAA : GGACTGGCTGAATCCAGAACTCTTCAAGTGAGATGTCTACAGAGAGGATGACACAATTATCCTGTTGTTACCGCGTGTGATATTTGGTGTTTATCCCTCCCGCGTAGTTGCTGAGTTTATGAAGAAACAATCTAATGACTCTGAATTTGCAGACTGTTGAAGATTACCAATTACCTAATGGCTTTTGAATATTGTTAGAAGATAGGGTTCATATCATTGCATAATTACGCGTTTCTAATAGGTCAAACATGAATTTTTTGAGCAACACAACTCAATTTTGTACTGAATGGGGAACCATGAGTTTTTATTTTTAAACTAAATTATTTTGCAT</gDNA_template>
            <first_frame> K  I  L  Q  V  H  *  R  A  S  E  *  S  K  T  Q  K  Q  I  R  S  A  G  R  R  N  K  D  S  Q  S  D  C  L  K  R  W  V  A  N  R  I  T  R  F  I  K  T  P  T  S  S  *  S  F  M  P  L  S  T  R  L  P  P  S  M  V  F  F  L  V  E  Y  P  A  T  A  T  T  S  K  L  S  N  L  F  R  C  S  T  L  R  L  V  Y  F  H  H  S  K  F  H  L  S  * :   L  R  S  T  M  L  I  K  V  *  V  L  W  V  I  F  T  Q  M  K  D  P  M  I  L  R  S  E  M  W  P  R  I  L  V  I  I  S  T  N  I  S  L  K  L  L  Y  F  * :   W  I  T  R  S  L  K  L  Y  *  R  R  A  K  T  G  V  L  L  C  S :   F  T  L  R  N  H  L  G  A  G  N  *  R  E  L  M  Q  A  A  L  *  K  S  K  N  H  L  Q  I  L  F  F  *  T  M  S  H  Q  G  N  G  R  T  S  W  I  S  M  T  I  W  M  T  L  A   : R  T  G  *  I  Q  N  S  S  S  E  M  S  T  E  R  M  T  Q  L  S  C  C  Y  R  V  *  Y  L  V  F  I  P  P  A  *  L  L  S  L  *  R  N  N  L  M  T  L  N  L  Q  T  V  E  D  Y  Q  L  P  N  G  F  *  I  L  L  E  D  R  V  H  I  I  A  *  L  R  V  S  N  R  S  N  M  N  F  L  S  N  T  T  Q  F  C  T  E  W  G  T  M  S  F  Y  F  *  T  K  L  F  C   </first_frame>
            <second_frame>  K  F  S  K  Y  T  R  E  H  R  S  S  Q  R  R  R  N  R  F  D  R  P  A  A  G  I  R  I  L  R  V  I  V  *  R  D  G  W  R  I  E  L  R  D  S  S  K  R  L  H  Q  V  N  P  S  C  P  *  A  Q  D  F  L  R  Q  W  C  S  S  W  *  N  I  R  Q  R  R  Q  R  R  N  C  R  I  C  S  V  V  P  L  S  D  W  F  T  S  T  T  R  N  F  T  Y  H   : D  *  G  V  L  C  *  *  R  F  E  Y  C  G  L  F  S  R  K  *  K  I  R  *  F  *  G  R  K  C  G  Q  E  Y  W  *  S  Y  L  Q  I  F  P  S  S  C  F  T  S   : D  G  *  Q  E  A  *  S  F  T  E  G  G  Q  R  Q  E  S  C  Y  A   : A  L  H  *  G  I  I  *  E  L  E  T  S  G  S  *  C  K  R  L  S  E  N  Q  R  T  I  C  K  Y  C  S  S  R  L  C  L  I  R  E  M  E  G  H  R  G  F  R  *  P  S  G  *  H  *  Q  :  G  L  A  E  S  R  T  L  Q  V  R  C  L  Q  R  G  *  H  N  Y  P  V  V  T  A  C  D  I  W  C  L  S  L  P  R  S  C  *  V  Y  E  E  T  I  *  *  L  *  I  C  R  L  L  K  I  T  N  Y  L  M  A  F  E  Y  C  *  K  I  G  F  I  S  L  H  N  Y  A  F  L  I  G  Q  T  *  I  F  *  A  T  Q  L  N  F  V  L  N  G  E  P  *  V  F  I  F  K  L  N  Y  F  A  </second_frame>
            <third_frame>   N  S  P  S  T  L  E  S  I  G  V  V  K  D  A  E  T  D  S  I  G  R  P  P  E  *  G  F  S  E  *  L  F  E  E  M  G  G  E  S  N  Y  E  I  H  Q  N  A  Y  I  K  L  I  L  H  A  L  K  H  K  T  S  S  V  N  G  V  L  L  G  R  I  S  G  N  G  D  N  V  E  I  V  E  S  V  P  L  F  H  S  Q  I  G  L  L  P  P  L  E  I  S  L  I  M  :  I  E  E  Y  Y  A  D  K  G  L  S  I  V  G  Y  F  H  A  N  E  R  S  D  D  F  E  V  G  N  V  A  K  N  I  G  D  H  I  Y  K  Y  F  P  Q  A  A  L  L  L  :  M  D  N  K  K  L  E  A  L  L  K  E  G  K  D  R  S  P  V  M  Q  :  L  Y  T  K  E  S  S  R  S  W  K  L  A  G  A  D  A  S  G  S  L  K  I  K  E  P  S  A  N  I  V  L  L  D  Y  V  S  S  G  K  W  K  D  I  V  D  F  D  D  H  L  D  D  I  S  K :   D  W  L  N  P  E  L  F  K  *  D  V  Y  R  E  D  D  T  I  I  L  L  L  P  R  V  I  F  G  V  Y  P  S  R  V  V  A  E  F  M  K  K  Q  S  N  D  S  E  F  A  D  C  *  R  L  P  I  T  *  W  L  L  N  I  V  R  R  *  G  S  Y  H  C  I  I  T  R  F  *  *  V  K  H  E  F  F  E  Q  H  N  S  I  L  Y  *  M  G  N  H  E  F  L  F  L  N  *  I  I  L  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21063" stop="20845"/>
                    <exon start="20514" stop="20368"/>
                    <exon start="20264" stop="20202"/>
                    <exon start="15667" stop="15501"/>
                    <exon start="15396" stop="15366"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFEEMGGESNYEIHQNAYIKLILHALKHKTSSVNGVLLGRISGNGDNVEIVESVPLFHSQIGLLPPLEISLIMIEEYYADKGLSIVGYFHANERSDDFEVGNVAKNIGDHIYKYFPQAALLLMDNKKLEALLKEGKDRSPVMQLYTKESSRSWKLAGADASGSLKIKEPSANIVLLDYVSSGKWKDIVDFDDHLDDISKDWLNPELFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="21158" e_stop="20845"/>
            <exon e_start="20514" e_stop="20368"/>
            <exon e_start="20264" e_stop="20202"/>
            <exon e_start="15667" e_stop="15501"/>
            <exon e_start="15396" e_stop="15249"/>
            <exon e_start="15198" e_stop="15077"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.925" acc_prob="0.471" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.949"/>
          <exon-only e_score="0.803"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21158" e_stop="20845" e_length="314"/>
          </exon>
          <intron i_serial="1" don_prob="0.925" acc_prob="0.471">
            <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20514" e_stop="20368" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20264" e_stop="20202" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="20201" i_stop="15668" i_length="4534"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15667" e_stop="15501" e_length="167"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15500" i_stop="15397" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="0.949">
            <gDNA_exon_boundary e_start="15396" e_stop="15249" e_length="148"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="15248" i_stop="15199" i_length="50"/>
          </intron>
          <exon e_serial="6" e_score="0.803">
            <gDNA_exon_boundary e_start="15198" e_stop="15077" e_length="122"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21158" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21148" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21141" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15501"/>
              <exon start="15396" stop="15279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21141" stop="20845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21139" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15501"/>
              <exon start="15396" stop="15295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21136" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15501"/>
              <exon start="15396" stop="15334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21135" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15501"/>
              <exon start="15396" stop="15390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21135" stop="20845"/>
              <exon start="20514" stop="20441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21133" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21131" stop="20880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21130" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21129" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15501"/>
              <exon start="15396" stop="15383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21128" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21123" stop="20845"/>
              <exon start="20514" stop="20439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21122" stop="20845"/>
              <exon start="20514" stop="20395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21118" stop="20845"/>
              <exon start="20514" stop="20427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21069" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21024" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15501"/>
              <exon start="15396" stop="15279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21007" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20907" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15501"/>
              <exon start="15396" stop="15249"/>
              <exon start="15198" stop="15077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612563" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTCTCCAAGTACACTAGAGAGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG : ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG : ATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAG : CTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAA : GGACTGGCTGAATCCAGAACTCTTCAAGTGAGATGTCTACAGAGAGGATGACACAATTATCCTGTTGTTACCGCGTGTGATATTTGGTGTTTATCCCTCCCGCGTAGTTGCTGAGTTTATGAAGAAACAATCTAATGACTCTGAATTT : AAGATAGGGTTCATATCATTGCATAATTACGCGTTTCTAATAGGTCAAACATGAATTTTTTGAGCAACACAACTCAATTTTGTACTGAATGGGGAACCATGAGTTTTTATTTTTAAACTAAA</gDNA_template>
            <first_frame> K  I  L  Q  V  H  *  R  A  S  E  *  S  K  T  Q  K  Q  I  R  S  A  G  R  R  N  K  D  S  Q  S  D  C  L  K  R  W  V  A  N  R  I  T  R  F  I  K  T  P  T  S  S  *  S  F  M  P  L  S  T  R  L  P  P  S  M  V  F  F  L  V  E  Y  P  A  T  A  T  T  S  K  L  S  N  L  F  R  C  S  T  L  R  L  V  Y  F  H  H  S  K  F  H  L  S  * :   L  R  S  T  M  L  I  K  V  *  V  L  W  V  I  F  T  Q  M  K  D  P  M  I  L  R  S  E  M  W  P  R  I  L  V  I  I  S  T  N  I  S  L  K  L  L  Y  F  * :   W  I  T  R  S  L  K  L  Y  *  R  R  A  K  T  G  V  L  L  C  S :   F  T  L  R  N  H  L  G  A  G  N  *  R  E  L  M  Q  A  A  L  *  K  S  K  N  H  L  Q  I  L  F  F  *  T  M  S  H  Q  G  N  G  R  T  S  W  I  S  M  T  I  W  M  T  L  A   : R  T  G  *  I  Q  N  S  S  S  E  M  S  T  E  R  M  T  Q  L  S  C  C  Y  R  V  *  Y  L  V  F  I  P  P  A  *  L  L  S  L  *  R  N  N  L  M  T  L  N  L :   R  *  G  S  Y  H  C  I  I  T  R  F  *  *  V  K  H  E  F  F  E  Q  H  N  S  I  L  Y  *  M  G  N  H  E  F  L  F  L  N  *  </first_frame>
            <second_frame>  K  F  S  K  Y  T  R  E  H  R  S  S  Q  R  R  R  N  R  F  D  R  P  A  A  G  I  R  I  L  R  V  I  V  *  R  D  G  W  R  I  E  L  R  D  S  S  K  R  L  H  Q  V  N  P  S  C  P  *  A  Q  D  F  L  R  Q  W  C  S  S  W  *  N  I  R  Q  R  R  Q  R  R  N  C  R  I  C  S  V  V  P  L  S  D  W  F  T  S  T  T  R  N  F  T  Y  H   : D  *  G  V  L  C  *  *  R  F  E  Y  C  G  L  F  S  R  K  *  K  I  R  *  F  *  G  R  K  C  G  Q  E  Y  W  *  S  Y  L  Q  I  F  P  S  S  C  F  T  S   : D  G  *  Q  E  A  *  S  F  T  E  G  G  Q  R  Q  E  S  C  Y  A   : A  L  H  *  G  I  I  *  E  L  E  T  S  G  S  *  C  K  R  L  S  E  N  Q  R  T  I  C  K  Y  C  S  S  R  L  C  L  I  R  E  M  E  G  H  R  G  F  R  *  P  S  G  *  H  *  Q  :  G  L  A  E  S  R  T  L  Q  V  R  C  L  Q  R  G  *  H  N  Y  P  V  V  T  A  C  D  I  W  C  L  S  L  P  R  S  C  *  V  Y  E  E  T  I  *  *  L  *  I   : *  D  R  V  H  I  I  A  *  L  R  V  S  N  R  S  N  M  N  F  L  S  N  T  T  Q  F  C  T  E  W  G  T  M  S  F  Y  F  *  T  K </second_frame>
            <third_frame>   N  S  P  S  T  L  E  S  I  G  V  V  K  D  A  E  T  D  S  I  G  R  P  P  E  *  G  F  S  E  *  L  F  E  E  M  G  G  E  S  N  Y  E  I  H  Q  N  A  Y  I  K  L  I  L  H  A  L  K  H  K  T  S  S  V  N  G  V  L  L  G  R  I  S  G  N  G  D  N  V  E  I  V  E  S  V  P  L  F  H  S  Q  I  G  L  L  P  P  L  E  I  S  L  I  M  :  I  E  E  Y  Y  A  D  K  G  L  S  I  V  G  Y  F  H  A  N  E  R  S  D  D  F  E  V  G  N  V  A  K  N  I  G  D  H  I  Y  K  Y  F  P  Q  A  A  L  L  L  :  M  D  N  K  K  L  E  A  L  L  K  E  G  K  D  R  S  P  V  M  Q  :  L  Y  T  K  E  S  S  R  S  W  K  L  A  G  A  D  A  S  G  S  L  K  I  K  E  P  S  A  N  I  V  L  L  D  Y  V  S  S  G  K  W  K  D  I  V  D  F  D  D  H  L  D  D  I  S  K :   D  W  L  N  P  E  L  F  K  *  D  V  Y  R  E  D  D  T  I  I  L  L  L  P  R  V  I  F  G  V  Y  P  S  R  V  V  A  E  F  M  K  K  Q  S  N  D  S  E  F  :  K  I  G  F  I  S  L  H  N  Y  A  F  L  I  G  Q  T  *  I  F  *  A  T  Q  L  N  F  V  L  N  G  E  P  *  V  F  I  F  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21063" stop="20845"/>
                    <exon start="20514" stop="20368"/>
                    <exon start="20264" stop="20202"/>
                    <exon start="15667" stop="15501"/>
                    <exon start="15396" stop="15366"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFEEMGGESNYEIHQNAYIKLILHALKHKTSSVNGVLLGRISGNGDNVEIVESVPLFHSQIGLLPPLEISLIMIEEYYADKGLSIVGYFHANERSDDFEVGNVAKNIGDHIYKYFPQAALLLMDNKKLEALLKEGKDRSPVMQLYTKESSRSWKLAGADASGSLKIKEPSANIVLLDYVSSGKWKDIVDFDDHLDDISKDWLNPELFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="21158" e_stop="20845"/>
            <exon e_start="20514" e_stop="20368"/>
            <exon e_start="20264" e_stop="20202"/>
            <exon e_start="19671" e_stop="19650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.925" acc_prob="0.471" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.968"/>
          <exon-only e_score="0.636"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21158" e_stop="20845" e_length="314"/>
          </exon>
          <intron i_serial="1" don_prob="0.925" acc_prob="0.471">
            <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20514" e_stop="20368" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.968">
            <gDNA_exon_boundary e_start="20264" e_stop="20202" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="20201" i_stop="19672" i_length="530"/>
          </intron>
          <exon e_serial="4" e_score="0.636">
            <gDNA_exon_boundary e_start="19671" e_stop="19650" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21158" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21141" stop="20845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21135" stop="20845"/>
              <exon start="20514" stop="20441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21131" stop="20880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21130" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="19671" stop="19650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21130" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21123" stop="20845"/>
              <exon start="20514" stop="20439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21122" stop="20845"/>
              <exon start="20514" stop="20395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21118" stop="20845"/>
              <exon start="20514" stop="20427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21007" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250382" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTCTCCAAGTACACTAGAGAGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG : ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG : ATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAG : TTGGCACGAAGGAAAAGCAGTT</gDNA_template>
            <first_frame> K  I  L  Q  V  H  *  R  A  S  E  *  S  K  T  Q  K  Q  I  R  S  A  G  R  R  N  K  D  S  Q  S  D  C  L  K  R  W  V  A  N  R  I  T  R  F  I  K  T  P  T  S  S  *  S  F  M  P  L  S  T  R  L  P  P  S  M  V  F  F  L  V  E  Y  P  A  T  A  T  T  S  K  L  S  N  L  F  R  C  S  T  L  R  L  V  Y  F  H  H  S  K  F  H  L  S  * :   L  R  S  T  M  L  I  K  V  *  V  L  W  V  I  F  T  Q  M  K  D  P  M  I  L  R  S  E  M  W  P  R  I  L  V  I  I  S  T  N  I  S  L  K  L  L  Y  F  * :   W  I  T  R  S  L  K  L  Y  *  R  R  A  K  T  G  V  L  L  C  S :   W  H  E  G  K  A  V </first_frame>
            <second_frame>  K  F  S  K  Y  T  R  E  H  R  S  S  Q  R  R  R  N  R  F  D  R  P  A  A  G  I  R  I  L  R  V  I  V  *  R  D  G  W  R  I  E  L  R  D  S  S  K  R  L  H  Q  V  N  P  S  C  P  *  A  Q  D  F  L  R  Q  W  C  S  S  W  *  N  I  R  Q  R  R  Q  R  R  N  C  R  I  C  S  V  V  P  L  S  D  W  F  T  S  T  T  R  N  F  T  Y  H   : D  *  G  V  L  C  *  *  R  F  E  Y  C  G  L  F  S  R  K  *  K  I  R  *  F  *  G  R  K  C  G  Q  E  Y  W  *  S  Y  L  Q  I  F  P  S  S  C  F  T  S   : D  G  *  Q  E  A  *  S  F  T  E  G  G  Q  R  Q  E  S  C  Y  A   : V  G  T  K  E  K  Q   </second_frame>
            <third_frame>   N  S  P  S  T  L  E  S  I  G  V  V  K  D  A  E  T  D  S  I  G  R  P  P  E  *  G  F  S  E  *  L  F  E  E  M  G  G  E  S  N  Y  E  I  H  Q  N  A  Y  I  K  L  I  L  H  A  L  K  H  K  T  S  S  V  N  G  V  L  L  G  R  I  S  G  N  G  D  N  V  E  I  V  E  S  V  P  L  F  H  S  Q  I  G  L  L  P  P  L  E  I  S  L  I  M  :  I  E  E  Y  Y  A  D  K  G  L  S  I  V  G  Y  F  H  A  N  E  R  S  D  D  F  E  V  G  N  V  A  K  N  I  G  D  H  I  Y  K  Y  F  P  Q  A  A  L  L  L  :  M  D  N  K  K  L  E  A  L  L  K  E  G  K  D  R  S  P  V  M  Q  :  L  A  R  R  K  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21063" stop="20845"/>
                    <exon start="20514" stop="20368"/>
                    <exon start="20264" stop="20202"/>
                    <exon start="19671" stop="19651"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFEEMGGESNYEIHQNAYIKLILHALKHKTSSVNGVLLGRISGNGDNVEIVESVPLFHSQIGLLPPLEISLIMIEEYYADKGLSIVGYFHANERSDDFEVGNVAKNIGDHIYKYFPQAALLLMDNKKLEALLKEGKDRSPVMQLARRKSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="34925" PGL_stop="21810"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34925" e_stop="34568"/>
            <exon e_start="33925" e_stop="33797"/>
            <exon e_start="33028" e_stop="32834"/>
            <exon e_start="31627" e_stop="31580"/>
            <exon e_start="31508" e_stop="31380"/>
            <exon e_start="29909" e_stop="29785"/>
            <exon e_start="29341" e_stop="29231"/>
            <exon e_start="25052" e_stop="24940"/>
            <exon e_start="24840" e_stop="24722"/>
            <exon e_start="24370" e_stop="24217"/>
            <exon e_start="22579" e_stop="22435"/>
            <exon e_start="22113" e_stop="21815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.933" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.829" e_score="0.961"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="0.960"/>
          <exon-intron don_prob="0.971" acc_prob="0.934" e_score="0.955"/>
          <exon-intron don_prob="0.986" acc_prob="0.706" e_score="0.973"/>
          <exon-intron don_prob="0.999" acc_prob="0.894" e_score="0.950"/>
          <exon-intron don_prob="0.988" acc_prob="0.300" e_score="0.974"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.979"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="34925" e_stop="34568" e_length="358"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.933">
            <gDNA_intron_boundary i_start="34567" i_stop="33926" i_length="642"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33925" e_stop="33797" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="33796" i_stop="33029" i_length="768"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33028" e_stop="32834" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32833" i_stop="31628" i_length="1206"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31627" e_stop="31580" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.822">
            <gDNA_intron_boundary i_start="31579" i_stop="31509" i_length="71"/>
          </intron>
          <exon e_serial="5" e_score="0.961">
            <gDNA_exon_boundary e_start="31508" e_stop="31380" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.829">
            <gDNA_intron_boundary i_start="31379" i_stop="29910" i_length="1470"/>
          </intron>
          <exon e_serial="6" e_score="0.960">
            <gDNA_exon_boundary e_start="29909" e_stop="29785" e_length="125"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="29784" i_stop="29342" i_length="443"/>
          </intron>
          <exon e_serial="7" e_score="0.955">
            <gDNA_exon_boundary e_start="29341" e_stop="29231" e_length="111"/>
          </exon>
          <intron i_serial="7" don_prob="0.971" acc_prob="0.934">
            <gDNA_intron_boundary i_start="29230" i_stop="25053" i_length="4178"/>
          </intron>
          <exon e_serial="8" e_score="0.973">
            <gDNA_exon_boundary e_start="25052" e_stop="24940" e_length="113"/>
          </exon>
          <intron i_serial="8" don_prob="0.986" acc_prob="0.706">
            <gDNA_intron_boundary i_start="24939" i_stop="24841" i_length="99"/>
          </intron>
          <exon e_serial="9" e_score="0.950">
            <gDNA_exon_boundary e_start="24840" e_stop="24722" e_length="119"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.894">
            <gDNA_intron_boundary i_start="24721" i_stop="24371" i_length="351"/>
          </intron>
          <exon e_serial="10" e_score="0.974">
            <gDNA_exon_boundary e_start="24370" e_stop="24217" e_length="154"/>
          </exon>
          <intron i_serial="10" don_prob="0.988" acc_prob="0.300">
            <gDNA_intron_boundary i_start="24216" i_stop="22580" i_length="1637"/>
          </intron>
          <exon e_serial="11" e_score="0.979">
            <gDNA_exon_boundary e_start="22579" e_stop="22435" e_length="145"/>
          </exon>
          <intron i_serial="11" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22434" i_stop="22114" i_length="321"/>
          </intron>
          <exon e_serial="12" e_score="0.980">
            <gDNA_exon_boundary e_start="22113" e_stop="21815" e_length="299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34925" stop="34568"/>
              <exon start="33925" stop="33797"/>
              <exon start="33028" stop="32840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34743" stop="34568"/>
              <exon start="33925" stop="33797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34741" stop="34568"/>
              <exon start="33925" stop="33797"/>
              <exon start="33028" stop="32834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34658" stop="34568"/>
              <exon start="33925" stop="33797"/>
              <exon start="33028" stop="32834"/>
              <exon start="31627" stop="31580"/>
              <exon start="31508" stop="31437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33813" stop="33797"/>
              <exon start="33028" stop="32834"/>
              <exon start="31627" stop="31580"/>
              <exon start="31508" stop="31380"/>
              <exon start="29909" stop="29785"/>
              <exon start="29341" stop="29231"/>
              <exon start="25052" stop="25005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33813" stop="33797"/>
              <exon start="33028" stop="32834"/>
              <exon start="31627" stop="31580"/>
              <exon start="31508" stop="31380"/>
              <exon start="29909" stop="29785"/>
              <exon start="29341" stop="29231"/>
              <exon start="25052" stop="25009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29289" stop="29231"/>
              <exon start="25052" stop="24940"/>
              <exon start="24840" stop="24722"/>
              <exon start="24370" stop="24217"/>
              <exon start="22579" stop="22435"/>
              <exon start="22113" stop="22027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29289" stop="29231"/>
              <exon start="25052" stop="24940"/>
              <exon start="24840" stop="24722"/>
              <exon start="24370" stop="24217"/>
              <exon start="22579" stop="22448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22578" stop="22435"/>
              <exon start="22113" stop="21815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227380" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAAATCATTACTCCTTACAAGTTACAAATATTTGAGCAACCCCATTCAACAAATTTTAAGAATAGATATTCCAGTAATTTTTTCCAGCCACAAGAAAAAAAAAAGAGAGTATAATGGGTGAATGGCTATCAATGCCCCTTCAAATTTCTTGCAAAATTGAGCTATGGAGGCTGTCTAAAGAAAATATAAGGTGTAAAAATGGTGTCTTTAACCTTATTGAGGCTACGATAGAGTTTACAGAGAAACAATGAGTGTTCAATCTGATTTTCAAGAAAAGGTATCTGCTTGTTTCAGACCTTGGCAACGTTCTTTCCAGTTTTGGGTTCGTGCAGTAGATATATATACTGGTTATAAG : GTGTTTCAATTAAGAGTTGGATTTGAAAAGGATGTGCAAAAACAAGAAGCAATGTGGGAGAGGCAGCATGAGGTTGCAGCTGAGAAGATATATAATATGTGCTCTGACCTTGGTGGGTTCTTCCTAAAG : GTTGCTCAACTAATTGGGAAACCGGACTTGGCCCCTGCTGCATGGGTGAGAAGGTTAGTTACTCTATGTGATCAAGCGCCTGCTACACCGTACAATGTGGTCAGGGCTGTGCTGGAGAAGGAATTAAATCAGAATGTTGATGAATTGTTTGAAAGTTTTGATTTCGATCCTCTCGGTTCTGCTTCTATTGCACAG : GTTCACAGAGCGAGACTCATAGGTGACAAAAGAGATGTTGTTGTCAAG : GTACAACACCCTGGGGTCCAACAGCTGATGATGACCGATATCCACAATTTGCAAGCTTTTGCACTATACTTGCAGAAGATTGATATAAAATTCGATATATACTCTTTGACAAAGGAAATTGAGAAACAG : ATCGGATATGAATTCAACTTTTTGAGAGAGGCTGATGCAATGGATAGAATTCGGCGTTTTCTCTACGAAAATAACAAAAAGTCCCCAGTTATGGTTCCACGGGTGATTCGAGATATTGTCACAAG : GAGGGTCCTAGTGATGGAATATATAGATGGAACCCCGATTCTGAAGCTAGGAGATGAAATGGCAAAGAGAGGCATCAGTCCAGATGGTAAAATTGCAGCGGTAGCAAGGCA : GAACATACTTAAAAGTTTGTCCCTAGCTTATGGACAAATGATACTCAGGAGTGGTTTCTTTCATGCAGATCCTCATCCAGGGAATATTCTAATCTGCAAAGGTGCTGAGGTTA : GTTGCATTGCTGGACTATGGACAAGTTAAGGATCTTCCAGAAAATCTCAGGCTTGGATATGCTAAACTTATTCTTGCTATTGCTGATGGCAATGCTACTACGGCCAAAGAAAGCTTTAA : GGAGCTTGGCATAGATACCCTAAGCAAATGTGAGGATGAGCAGAAAGAAATGCTTAAATTGGCACAAGGGATGTTTGACACAAAATTACCACCTGGTGTAAAGATGATGCAACCTTTCTCAGAAGAATCTTCAGTCAAAAAAATTGCAGTTGAG : GCTTTTCCAGAAGAACTTTTCTCGATTCTTCGAACTCTGCAAATACTGAGAGGGCTTAGTGTTGGTCTGGGAATAAGTCATTCATGTGCTGAACAGTGGAGACCTATTGCTGAGGAAGCTTTGTATAATGCTGGAAGATTGACAG : ATATAGATATGAAGCGATCACATAGACATAGAACCAGAAGAAAGTCCGGAAAATAACATCTAGCGAGTCAAGAGGAGCAAAGTATGAACGAAATCGGAGATGGTCATATTGCTAAATTTTTGGAGAAAGAGCAATGGTTTGCTTTTGTAGCAAAGCTTTTCAAGGACAAGTGACCACAAAAACACTACATTGCTTTGTATTTTTTTCTCTTCCTGTGGCCTTGCAACAATTTCTGTACAACATGGCCTGTAATTGAATTGATAATTGGCAAAACAGGTAAAAAGAGATGCATTTTGATC</gDNA_template>
            <first_frame> K  K  I  I  T  P  Y  K  L  Q  I  F  E  Q  P  H  S  T  N  F  K  N  R  Y  S  S  N  F  F  Q  P  Q  E  K  K  K  R  V  *  W  V  N  G  Y  Q  C  P  F  K  F  L  A  K  L  S  Y  G  G  C  L  K  K  I  *  G  V  K  M  V  S  L  T  L  L  R  L  R  *  S  L  Q  R  N  N  E  C  S  I  *  F  S  R  K  G  I  C  L  F  Q  T  L  A  T  F  F  P  V  L  G  S  C  S  R  Y  I  Y  W  L  *   : G  V  S  I  K  S  W  I  *  K  G  C  A  K  T  R  S  N  V  G  E  A  A  *  G  C  S  *  E  D  I  *  Y  V  L  *  P  W  W  V  L  P  K   : G  C  S  T  N  W  E  T  G  L  G  P  C  C  M  G  E  K  V  S  Y  S  M  *  S  S  A  C  Y  T  V  Q  C  G  Q  G  C  A  G  E  G  I  K  S  E  C  *  *  I  V  *  K  F  *  F  R  S  S  R  F  C  F  Y  C  T   : G  S  Q  S  E  T  H  R  *  Q  K  R  C  C  C  Q   : G  T  T  P  W  G  P  T  A  D  D  D  R  Y  P  Q  F  A  S  F  C  T  I  L  A  E  D  *  Y  K  I  R  Y  I  L  F  D  K  G  N  *  E  T   : D  R  I  *  I  Q  L  F  E  R  G  *  C  N  G  *  N  S  A  F  S  L  R  K  *  Q  K  V  P  S  Y  G  S  T  G  D  S  R  Y  C  H  K  :  E  G  P  S  D  G  I  Y  R  W  N  P  D  S  E  A  R  R  *  N  G  K  E  R  H  Q  S  R  W  *  N  C  S  G  S  K  A  :  E  H  T  *  K  F  V  P  S  L  W  T  N  D  T  Q  E  W  F  L  S  C  R  S  S  S  R  E  Y  S  N  L  Q  R  C  *  G  * :   L  H  C  W  T  M  D  K  L  R  I  F  Q  K  I  S  G  L  D  M  L  N  L  F  L  L  L  L  M  A  M  L  L  R  P  K  K  A  L   : R  S  L  A  *  I  P  *  A  N  V  R  M  S  R  K  K  C  L  N  W  H  K  G  C  L  T  Q  N  Y  H  L  V  *  R  *  C  N  L  S  Q  K  N  L  Q  S  K  K  L  Q  L  R :   L  F  Q  K  N  F  S  R  F  F  E  L  C  K  Y  *  E  G  L  V  L  V  W  E  *  V  I  H  V  L  N  S  G  D  L  L  L  R  K  L  C  I  M  L  E  D  *  Q  :  I  *  I  *  S  D  H  I  D  I  E  P  E  E  S  P  E  N  N  I  *  R  V  K  R  S  K  V  *  T  K  S  E  M  V  I  L  L  N  F  W  R  K  S  N  G  L  L  L  *  Q  S  F  S  R  T  S  D  H  K  N  T  T  L  L  C  I  F  F  S  S  C  G  L  A  T  I  S  V  Q  H  G  L  *  L  N  *  *  L  A  K  Q  V  K  R  D  A  F  *   </first_frame>
            <second_frame>  R  K  S  L  L  L  T  S  Y  K  Y  L  S  N  P  I  Q  Q  I  L  R  I  D  I  P  V  I  F  S  S  H  K  K  K  K  R  E  Y  N  G  *  M  A  I  N  A  P  S  N  F  L  Q  N  *  A  M  E  A  V  *  R  K  Y  K  V  *  K  W  C  L  *  P  Y  *  G  Y  D  R  V  Y  R  E  T  M  S  V  Q  S  D  F  Q  E  K  V  S  A  C  F  R  P  W  Q  R  S  F  Q  F  W  V  R  A  V  D  I  Y  T  G  Y  K  :  V  F  Q  L  R  V  G  F  E  K  D  V  Q  K  Q  E  A  M  W  E  R  Q  H  E  V  A  A  E  K  I  Y  N  M  C  S  D  L  G  G  F  F  L  K  :  V  A  Q  L  I  G  K  P  D  L  A  P  A  A  W  V  R  R  L  V  T  L  C  D  Q  A  P  A  T  P  Y  N  V  V  R  A  V  L  E  K  E  L  N  Q  N  V  D  E  L  F  E  S  F  D  F  D  P  L  G  S  A  S  I  A  Q  :  V  H  R  A  R  L  I  G  D  K  R  D  V  V  V  K  :  V  Q  H  P  G  V  Q  Q  L  M  M  T  D  I  H  N  L  Q  A  F  A  L  Y  L  Q  K  I  D  I  K  F  D  I  Y  S  L  T  K  E  I  E  K  Q  :  I  G  Y  E  F  N  F  L  R  E  A  D  A  M  D  R  I  R  R  F  L  Y  E  N  N  K  K  S  P  V  M  V  P  R  V  I  R  D  I  V  T  R :   R  V  L  V  M  E  Y  I  D  G  T  P  I  L  K  L  G  D  E  M  A  K  R  G  I  S  P  D  G  K  I  A  A  V  A  R  Q :   N  I  L  K  S  L  S  L  A  Y  G  Q  M  I  L  R  S  G  F  F  H  A  D  P  H  P  G  N  I  L  I  C  K  G  A  E  V   : S  C  I  A  G  L  W  T  S  *  G  S  S  R  K  S  Q  A  W  I  C  *  T  Y  S  C  Y  C  *  W  Q  C  Y  Y  G  Q  R  K  L  *  :  G  A  W  H  R  Y  P  K  Q  M  *  G  *  A  E  R  N  A  *  I  G  T  R  D  V  *  H  K  I  T  T  W  C  K  D  D  A  T  F  L  R  R  I  F  S  Q  K  N  C  S  *   : G  F  S  R  R  T  F  L  D  S  S  N  S  A  N  T  E  R  A  *  C  W  S  G  N  K  S  F  M  C  *  T  V  E  T  Y  C  *  G  S  F  V  *  C  W  K  I  D  R :   Y  R  Y  E  A  I  T  *  T  *  N  Q  K  K  V  R  K  I  T  S  S  E  S  R  G  A  K  Y  E  R  N  R  R  W  S  Y  C  *  I  F  G  E  R  A  M  V  C  F  C  S  K  A  F  Q  G  Q  V  T  T  K  T  L  H  C  F  V  F  F  S  L  P  V  A  L  Q  Q  F  L  Y  N  M  A  C  N  *  I  D  N  W  Q  N  R  *  K  E  M  H  F  D  </second_frame>
            <third_frame>   E  N  H  Y  S  L  Q  V  T  N  I  *  A  T  P  F  N  K  F  *  E  *  I  F  Q  *  F  F  P  A  T  R  K  K  K  E  S  I  M  G  E  W  L  S  M  P  L  Q  I  S  C  K  I  E  L  W  R  L  S  K  E  N  I  R  C  K  N  G  V  F  N  L  I  E  A  T  I  E  F  T  E  K  Q  *  V  F  N  L  I  F  K  K  R  Y  L  L  V  S  D  L  G  N  V  L  S  S  F  G  F  V  Q  *  I  Y  I  L  V  I  R :   C  F  N  *  E  L  D  L  K  R  M  C  K  N  K  K  Q  C  G  R  G  S  M  R  L  Q  L  R  R  Y  I  I  C  A  L  T  L  V  G  S  S  *  R :   L  L  N  *  L  G  N  R  T  W  P  L  L  H  G  *  E  G  *  L  L  Y  V  I  K  R  L  L  H  R  T  M  W  S  G  L  C  W  R  R  N  *  I  R  M  L  M  N  C  L  K  V  L  I  S  I  L  S  V  L  L  L  L  H  R :   F  T  E  R  D  S  *  V  T  K  E  M  L  L  S  R :   Y  N  T  L  G  S  N  S  *  *  *  P  I  S  T  I  C  K  L  L  H  Y  T  C  R  R  L  I  *  N  S  I  Y  T  L  *  Q  R  K  L  R  N  R :   S  D  M  N  S  T  F  *  E  R  L  M  Q  W  I  E  F  G  V  F  S  T  K  I  T  K  S  P  Q  L  W  F  H  G  *  F  E  I  L  S  Q   : G  G  S  *  *  W  N  I  *  M  E  P  R  F  *  S  *  E  M  K  W  Q  R  E  A  S  V  Q  M  V  K  L  Q  R  *  Q  G   : R  T  Y  L  K  V  C  P  *  L  M  D  K  *  Y  S  G  V  V  S  F  M  Q  I  L  I  Q  G  I  F  *  S  A  K  V  L  R  L  :  V  A  L  L  D  Y  G  Q  V  K  D  L  P  E  N  L  R  L  G  Y  A  K  L  I  L  A  I  A  D  G  N  A  T  T  A  K  E  S  F  K :   E  L  G  I  D  T  L  S  K  C  E  D  E  Q  K  E  M  L  K  L  A  Q  G  M  F  D  T  K  L  P  P  G  V  K  M  M  Q  P  F  S  E  E  S  S  V  K  K  I  A  V  E  :  A  F  P  E  E  L  F  S  I  L  R  T  L  Q  I  L  R  G  L  S  V  G  L  G  I  S  H  S  C  A  E  Q  W  R  P  I  A  E  E  A  L  Y  N  A  G  R  L  T   : D  I  D  M  K  R  S  H  R  H  R  T  R  R  K  S  G  K  *  H  L  A  S  Q  E  E  Q  S  M  N  E  I  G  D  G  H  I  A  K  F  L  E  K  E  Q  W  F  A  F  V  A  K  L  F  K  D  K  *  P  Q  K  H  Y  I  A  L  Y  F  F  L  F  L  W  P  C  N  N  F  C  T  T  W  P  V  I  E  L  I  I  G  K  T  G  K  K  R  C  I  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34702" stop="34568"/>
                    <exon start="33925" stop="33797"/>
                    <exon start="33028" stop="32834"/>
                    <exon start="31627" stop="31580"/>
                    <exon start="31508" stop="31380"/>
                    <exon start="29909" stop="29785"/>
                    <exon start="29341" stop="29231"/>
                    <exon start="25052" stop="24940"/>
                    <exon start="24840" stop="24812"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GYDRVYRETMSVQSDFQEKVSACFRPWQRSFQFWVRAVDIYTGYKVFQLRVGFEKDVQKQEAMWERQHEVAAEKIYNMCSDLGGFFLKVAQLIGKPDLAPAAWVRRLVTLCDQAPATPYNVVRAVLEKELNQNVDELFESFDFDPLGSASIAQVHRARLIGDKRDVVVKVQHPGVQQLMMTDIHNLQAFALYLQKIDIKFDIYSLTKEIEKQIGYEFNFLREADAMDRIRRFLYENNKKSPVMVPRVIRDIVTRRVLVMEYIDGTPILKLGDEMAKRGISPDGKIAAVARQNILKSLSLAYGQMILRSGFFHADPHPGNILICKGAEVSCIAGLWTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="34925" e_stop="34568"/>
            <exon e_start="33925" e_stop="33797"/>
            <exon e_start="33028" e_stop="32834"/>
            <exon e_start="32251" e_stop="32134"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.933" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="34925" e_stop="34568" e_length="358"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.933">
            <gDNA_intron_boundary i_start="34567" i_stop="33926" i_length="642"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33925" e_stop="33797" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="33796" i_stop="33029" i_length="768"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33028" e_stop="32834" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="32833" i_stop="32252" i_length="582"/>
          </intron>
          <exon e_serial="4" e_score="0.941">
            <gDNA_exon_boundary e_start="32251" e_stop="32134" e_length="118"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34925" stop="34568"/>
              <exon start="33925" stop="33797"/>
              <exon start="33028" stop="32840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34743" stop="34568"/>
              <exon start="33925" stop="33797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34742" stop="34568"/>
              <exon start="33925" stop="33797"/>
              <exon start="33028" stop="32834"/>
              <exon start="32251" stop="32134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34741" stop="34568"/>
              <exon start="33925" stop="33797"/>
              <exon start="33028" stop="32834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312963" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAAATCATTACTCCTTACAAGTTACAAATATTTGAGCAACCCCATTCAACAAATTTTAAGAATAGATATTCCAGTAATTTTTTCCAGCCACAAGAAAAAAAAAAGAGAGTATAATGGGTGAATGGCTATCAATGCCCCTTCAAATTTCTTGCAAAATTGAGCTATGGAGGCTGTCTAAAGAAAATATAAGGTGTAAAAATGGTGTCTTTAACCTTATTGAGGCTACGATAGAGTTTACAGAGAAACAATGAGTGTTCAATCTGATTTTCAAGAAAAGGTATCTGCTTGTTTCAGACCTTGGCAACGTTCTTTCCAGTTTTGGGTTCGTGCAGTAGATATATATACTGGTTATAAG : GTGTTTCAATTAAGAGTTGGATTTGAAAAGGATGTGCAAAAACAAGAAGCAATGTGGGAGAGGCAGCATGAGGTTGCAGCTGAGAAGATATATAATATGTGCTCTGACCTTGGTGGGTTCTTCCTAAAG : GTTGCTCAACTAATTGGGAAACCGGACTTGGCCCCTGCTGCATGGGTGAGAAGGTTAGTTACTCTATGTGATCAAGCGCCTGCTACACCGTACAATGTGGTCAGGGCTGTGCTGGAGAAGGAATTAAATCAGAATGTTGATGAATTGTTTGAAAGTTTTGATTTCGATCCTCTCGGTTCTGCTTCTATTGCACAG : TTTGCATTGTATGGAAATGTGGCTCCTTTCATGAGTCCTTTTTGTTAAATGCAAAATTTGTTCATAGCTAACATGCAAGTGACGACAAGTACATCCATGATCATGACTCATGATGATG</gDNA_template>
            <first_frame> K  K  I  I  T  P  Y  K  L  Q  I  F  E  Q  P  H  S  T  N  F  K  N  R  Y  S  S  N  F  F  Q  P  Q  E  K  K  K  R  V  *  W  V  N  G  Y  Q  C  P  F  K  F  L  A  K  L  S  Y  G  G  C  L  K  K  I  *  G  V  K  M  V  S  L  T  L  L  R  L  R  *  S  L  Q  R  N  N  E  C  S  I  *  F  S  R  K  G  I  C  L  F  Q  T  L  A  T  F  F  P  V  L  G  S  C  S  R  Y  I  Y  W  L  *   : G  V  S  I  K  S  W  I  *  K  G  C  A  K  T  R  S  N  V  G  E  A  A  *  G  C  S  *  E  D  I  *  Y  V  L  *  P  W  W  V  L  P  K   : G  C  S  T  N  W  E  T  G  L  G  P  C  C  M  G  E  K  V  S  Y  S  M  *  S  S  A  C  Y  T  V  Q  C  G  Q  G  C  A  G  E  G  I  K  S  E  C  *  *  I  V  *  K  F  *  F  R  S  S  R  F  C  F  Y  C  T   : V  C  I  V  W  K  C  G  S  F  H  E  S  F  L  L  N  A  K  F  V  H  S  *  H  A  S  D  D  K  Y  I  H  D  H  D  S  *  *   </first_frame>
            <second_frame>  R  K  S  L  L  L  T  S  Y  K  Y  L  S  N  P  I  Q  Q  I  L  R  I  D  I  P  V  I  F  S  S  H  K  K  K  K  R  E  Y  N  G  *  M  A  I  N  A  P  S  N  F  L  Q  N  *  A  M  E  A  V  *  R  K  Y  K  V  *  K  W  C  L  *  P  Y  *  G  Y  D  R  V  Y  R  E  T  M  S  V  Q  S  D  F  Q  E  K  V  S  A  C  F  R  P  W  Q  R  S  F  Q  F  W  V  R  A  V  D  I  Y  T  G  Y  K  :  V  F  Q  L  R  V  G  F  E  K  D  V  Q  K  Q  E  A  M  W  E  R  Q  H  E  V  A  A  E  K  I  Y  N  M  C  S  D  L  G  G  F  F  L  K  :  V  A  Q  L  I  G  K  P  D  L  A  P  A  A  W  V  R  R  L  V  T  L  C  D  Q  A  P  A  T  P  Y  N  V  V  R  A  V  L  E  K  E  L  N  Q  N  V  D  E  L  F  E  S  F  D  F  D  P  L  G  S  A  S  I  A  Q  :  F  A  L  Y  G  N  V  A  P  F  M  S  P  F  C  *  M  Q  N  L  F  I  A  N  M  Q  V  T  T  S  T  S  M  I  M  T  H  D  D  </second_frame>
            <third_frame>   E  N  H  Y  S  L  Q  V  T  N  I  *  A  T  P  F  N  K  F  *  E  *  I  F  Q  *  F  F  P  A  T  R  K  K  K  E  S  I  M  G  E  W  L  S  M  P  L  Q  I  S  C  K  I  E  L  W  R  L  S  K  E  N  I  R  C  K  N  G  V  F  N  L  I  E  A  T  I  E  F  T  E  K  Q  *  V  F  N  L  I  F  K  K  R  Y  L  L  V  S  D  L  G  N  V  L  S  S  F  G  F  V  Q  *  I  Y  I  L  V  I  R :   C  F  N  *  E  L  D  L  K  R  M  C  K  N  K  K  Q  C  G  R  G  S  M  R  L  Q  L  R  R  Y  I  I  C  A  L  T  L  V  G  S  S  *  R :   L  L  N  *  L  G  N  R  T  W  P  L  L  H  G  *  E  G  *  L  L  Y  V  I  K  R  L  L  H  R  T  M  W  S  G  L  C  W  R  R  N  *  I  R  M  L  M  N  C  L  K  V  L  I  S  I  L  S  V  L  L  L  L  H  S :   L  H  C  M  E  M  W  L  L  S  *  V  L  F  V  K  C  K  I  C  S  *  L  T  C  K  *  R  Q  V  H  P  *  S  *  L  M  M  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34702" stop="34568"/>
                    <exon start="33925" stop="33797"/>
                    <exon start="33028" stop="32834"/>
                    <exon start="32251" stop="32204"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GYDRVYRETMSVQSDFQEKVSACFRPWQRSFQFWVRAVDIYTGYKVFQLRVGFEKDVQKQEAMWERQHEVAAEKIYNMCSDLGGFFLKVAQLIGKPDLAPAAWVRRLVTLCDQAPATPYNVVRAVLEKELNQNVDELFESFDFDPLGSASIAQFALYGNVAPFMSPFC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="29346" e_stop="29231"/>
            <exon e_start="25052" e_stop="24944"/>
            <exon e_start="24840" e_stop="24722"/>
            <exon e_start="24370" e_stop="24217"/>
            <exon e_start="22579" e_stop="22435"/>
            <exon e_start="22113" e_stop="21810"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.934" e_score="0.991"/>
          <exon-intron don_prob="1.000" acc_prob="0.706" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.894" e_score="0.983"/>
          <exon-intron don_prob="0.988" acc_prob="0.300" e_score="0.993"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.993"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="29346" e_stop="29231" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.934">
            <gDNA_intron_boundary i_start="29230" i_stop="25053" i_length="4178"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25052" e_stop="24944" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.706">
            <gDNA_intron_boundary i_start="24943" i_stop="24841" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="24840" e_stop="24722" e_length="119"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.894">
            <gDNA_intron_boundary i_start="24721" i_stop="24371" i_length="351"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="24370" e_stop="24217" e_length="154"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.300">
            <gDNA_intron_boundary i_start="24216" i_stop="22580" i_length="1637"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="22579" e_stop="22435" e_length="145"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22434" i_stop="22114" i_length="321"/>
          </intron>
          <exon e_serial="6" e_score="0.980">
            <gDNA_exon_boundary e_start="22113" e_stop="21810" e_length="304"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29346" stop="29231"/>
              <exon start="25052" stop="24944"/>
              <exon start="24840" stop="24722"/>
              <exon start="24370" stop="24230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24975" stop="24944"/>
              <exon start="24840" stop="24722"/>
              <exon start="24370" stop="24217"/>
              <exon start="22579" stop="22435"/>
              <exon start="22113" stop="21810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22578" stop="22435"/>
              <exon start="22113" stop="21815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227380" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGGAGGGTCCTAGTGATGGAATATATAGATGGAACCCCGATTCTGAAGCTAGGAGATGAAATGGCAAAGAGAGGCATCAGTCCAGATGGTAAAATTGCAGCGGTAGCAAGGCA : GAACATACTTAAAAGTTTGTCCCTAGCTTATGGACAAATGATACTCAGGAGTGGTTTCTTTCATGCAGATCCTCATCCAGGGAATATTCTAATCTGCAAAGGTGCTGAG : GTTGCATTGCTGGACTATGGACAAGTTAAGGATCTTCCAGAAAATCTCAGGCTTGGATATGCTAAACTTATTCTTGCTATTGCTGATGGCAATGCTACTACGGCCAAAGAAAGCTTTAA : GGAGCTTGGCATAGATACCCTAAGCAAATGTGAGGATGAGCAGAAAGAAATGCTTAAATTGGCACAAGGGATGTTTGACACAAAATTACCACCTGGTGTAAAGATGATGCAACCTTTCTCAGAAGAATCTTCAGTCAAAAAAATTGCAGTTGAG : GCTTTTCCAGAAGAACTTTTCTCGATTCTTCGAACTCTGCAAATACTGAGAGGGCTTAGTGTTGGTCTGGGAATAAGTCATTCATGTGCTGAACAGTGGAGACCTATTGCTGAGGAAGCTTTGTATAATGCTGGAAGATTGACAG : ATATAGATATGAAGCGATCACATAGACATAGAACCAGAAGAAAGTCCGGAAAATAACATCTAGCGAGTCAAGAGGAGCAAAGTATGAACGAAATCGGAGATGGTCATATTGCTAAATTTTTGGAGAAAGAGCAATGGTTTGCTTTTGTAGCAAAGCTTTTCAAGGACAAGTGACCACAAAAACACTACATTGCTTTGTATTTTTTTCTCTTCCTGTGGCCTTGCAACAATTTCTGTACAACATGGCCTGTAATTGAATTGATAATTGGCAAAACAGGTAAAAAGAGATGCATTTTGATCATGCC</gDNA_template>
            <first_frame> K  R  R  V  L  V  M  E  Y  I  D  G  T  P  I  L  K  L  G  D  E  M  A  K  R  G  I  S  P  D  G  K  I  A  A  V  A  R  Q :   N  I  L  K  S  L  S  L  A  Y  G  Q  M  I  L  R  S  G  F  F  H  A  D  P  H  P  G  N  I  L  I  C  K  G  A  E  :  V  A  L  L  D  Y  G  Q  V  K  D  L  P  E  N  L  R  L  G  Y  A  K  L  I  L  A  I  A  D  G  N  A  T  T  A  K  E  S  F  K :   E  L  G  I  D  T  L  S  K  C  E  D  E  Q  K  E  M  L  K  L  A  Q  G  M  F  D  T  K  L  P  P  G  V  K  M  M  Q  P  F  S  E  E  S  S  V  K  K  I  A  V  E  :  A  F  P  E  E  L  F  S  I  L  R  T  L  Q  I  L  R  G  L  S  V  G  L  G  I  S  H  S  C  A  E  Q  W  R  P  I  A  E  E  A  L  Y  N  A  G  R  L  T   : D  I  D  M  K  R  S  H  R  H  R  T  R  R  K  S  G  K  *  H  L  A  S  Q  E  E  Q  S  M  N  E  I  G  D  G  H  I  A  K  F  L  E  K  E  Q  W  F  A  F  V  A  K  L  F  K  D  K  *  P  Q  K  H  Y  I  A  L  Y  F  F  L  F  L  W  P  C  N  N  F  C  T  T  W  P  V  I  E  L  I  I  G  K  T  G  K  K  R  C  I  L  I  M   </first_frame>
            <second_frame>  K  G  G  S  *  *  W  N  I  *  M  E  P  R  F  *  S  *  E  M  K  W  Q  R  E  A  S  V  Q  M  V  K  L  Q  R  *  Q  G   : R  T  Y  L  K  V  C  P  *  L  M  D  K  *  Y  S  G  V  V  S  F  M  Q  I  L  I  Q  G  I  F  *  S  A  K  V  L  R :   L  H  C  W  T  M  D  K  L  R  I  F  Q  K  I  S  G  L  D  M  L  N  L  F  L  L  L  L  M  A  M  L  L  R  P  K  K  A  L   : R  S  L  A  *  I  P  *  A  N  V  R  M  S  R  K  K  C  L  N  W  H  K  G  C  L  T  Q  N  Y  H  L  V  *  R  *  C  N  L  S  Q  K  N  L  Q  S  K  K  L  Q  L  R :   L  F  Q  K  N  F  S  R  F  F  E  L  C  K  Y  *  E  G  L  V  L  V  W  E  *  V  I  H  V  L  N  S  G  D  L  L  L  R  K  L  C  I  M  L  E  D  *  Q  :  I  *  I  *  S  D  H  I  D  I  E  P  E  E  S  P  E  N  N  I  *  R  V  K  R  S  K  V  *  T  K  S  E  M  V  I  L  L  N  F  W  R  K  S  N  G  L  L  L  *  Q  S  F  S  R  T  S  D  H  K  N  T  T  L  L  C  I  F  F  S  S  C  G  L  A  T  I  S  V  Q  H  G  L  *  L  N  *  *  L  A  K  Q  V  K  R  D  A  F  *  S  C  </second_frame>
            <third_frame>   K  E  G  P  S  D  G  I  Y  R  W  N  P  D  S  E  A  R  R  *  N  G  K  E  R  H  Q  S  R  W  *  N  C  S  G  S  K  A  :  E  H  T  *  K  F  V  P  S  L  W  T  N  D  T  Q  E  W  F  L  S  C  R  S  S  S  R  E  Y  S  N  L  Q  R  C  *   : G  C  I  A  G  L  W  T  S  *  G  S  S  R  K  S  Q  A  W  I  C  *  T  Y  S  C  Y  C  *  W  Q  C  Y  Y  G  Q  R  K  L  *  :  G  A  W  H  R  Y  P  K  Q  M  *  G  *  A  E  R  N  A  *  I  G  T  R  D  V  *  H  K  I  T  T  W  C  K  D  D  A  T  F  L  R  R  I  F  S  Q  K  N  C  S  *   : G  F  S  R  R  T  F  L  D  S  S  N  S  A  N  T  E  R  A  *  C  W  S  G  N  K  S  F  M  C  *  T  V  E  T  Y  C  *  G  S  F  V  *  C  W  K  I  D  R :   Y  R  Y  E  A  I  T  *  T  *  N  Q  K  K  V  R  K  I  T  S  S  E  S  R  G  A  K  Y  E  R  N  R  R  W  S  Y  C  *  I  F  G  E  R  A  M  V  C  F  C  S  K  A  F  Q  G  Q  V  T  T  K  T  L  H  C  F  V  F  F  S  L  P  V  A  L  Q  Q  F  L  Y  N  M  A  C  N  *  I  D  N  W  Q  N  R  *  K  E  M  H  F  D  H  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29346" stop="29231"/>
                    <exon start="25052" stop="24944"/>
                    <exon start="24840" stop="24722"/>
                    <exon start="24370" stop="24217"/>
                    <exon start="22579" stop="22435"/>
                    <exon start="22113" stop="22058"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRRVLVMEYIDGTPILKLGDEMAKRGISPDGKIAAVARQNILKSLSLAYGQMILRSGFFHADPHPGNILICKGAEVALLDYGQVKDLPENLRLGYAKLILAIADGNATTAKESFKELGIDTLSKCEDEQKEMLKLAQGMFDTKLPPGVKMMQPFSEESSVKKIAVEAFPEELFSILRTLQILRGLSVGLGISHSCAEQWRPIAEEALYNAGRLTDIDMKRSHRHRTRRKSGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="22899" e_stop="22435"/>
            <exon e_start="22113" e_stop="21815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.989"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="22899" e_stop="22435" e_length="465"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22434" i_stop="22114" i_length="321"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="22113" e_stop="21815" e_length="299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22899" stop="22435"/>
              <exon start="22113" stop="21815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22578" stop="22435"/>
              <exon start="22113" stop="21815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227380" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTCCAACCGTCATGAAAATGACTCTGGATCATTCTGAATTTCAGTCTCTTAAAAATTTGTGAAAATTCAGCTCAATTAGGTCCCATATAATCTGGATTTTAGCTTCTGTGACTTAAAAGTGGTCTGTTTTGTTCTCTTGCATTATGCTCCGCAAATGATAAGGTGGATCTTGTACCTTCTTAAGTTCTTTGTATCACTTAGTACAGTGAATGACGCCTTGTATCACCGGCCTTTCTTATTTGCTGATTAATTTTGTTAAATGTACTTGGTGACATGAGTACTAAGGTCAAAATGTGAACACAATTCTATTTGATGTTAGGCTTTTCCAGAAGAACTTTTCTCGATTCTTCGAACTCTGCAAATACTGAGAGGGCTTAGTGTTGGTCTGGGAATAAGTCATTCATGTGCTGAACAGTGGAGACCTATTGCTGAGGAAGCTTTGTATAATGCTGGAAGATTGACAG : ATATAGATATGAAGCGATCACATAGACATAGAACCAGAAGAAAGTCCGGAAAATAACATCTAGCGAGTCAAGAGGAGCAAAGTATGAACGAAATCGGAGATGGTCATATTGCTAAATTTTTGGAGAAAGAGCAATGGTTTGCTTTTGTAGCAAAGCTTTTCAAGGACAAGTGACCACAAAAACACTACATTGCTTTGTATTTTTTTCTCTTCCTGTGGCCTTGCAACAATTTCTGTACAACATGGCCTGTAATTGAATTGATAATTGGCAAAACAGGTAAAAAGAGATGCATTTTGATC</gDNA_template>
            <first_frame> C  P  T  V  M  K  M  T  L  D  H  S  E  F  Q  S  L  K  N  L  *  K  F  S  S  I  R  S  H  I  I  W  I  L  A  S  V  T  *  K  W  S  V  L  F  S  C  I  M  L  R  K  *  *  G  G  S  C  T  F  L  S  S  L  Y  H  L  V  Q  *  M  T  P  C  I  T  G  L  S  Y  L  L  I  N  F  V  K  C  T  W  *  H  E  Y  *  G  Q  N  V  N  T  I  L  F  D  V  R  L  F  Q  K  N  F  S  R  F  F  E  L  C  K  Y  *  E  G  L  V  L  V  W  E  *  V  I  H  V  L  N  S  G  D  L  L  L  R  K  L  C  I  M  L  E  D  *  Q  :  I  *  I  *  S  D  H  I  D  I  E  P  E  E  S  P  E  N  N  I  *  R  V  K  R  S  K  V  *  T  K  S  E  M  V  I  L  L  N  F  W  R  K  S  N  G  L  L  L  *  Q  S  F  S  R  T  S  D  H  K  N  T  T  L  L  C  I  F  F  S  S  C  G  L  A  T  I  S  V  Q  H  G  L  *  L  N  *  *  L  A  K  Q  V  K  R  D  A  F  *   </first_frame>
            <second_frame>  V  Q  P  S  *  K  *  L  W  I  I  L  N  F  S  L  L  K  I  C  E  N  S  A  Q  L  G  P  I  *  S  G  F  *  L  L  *  L  K  S  G  L  F  C  S  L  A  L  C  S  A  N  D  K  V  D  L  V  P  S  *  V  L  C  I  T  *  Y  S  E  *  R  L  V  S  P  A  F  L  I  C  *  L  I  L  L  N  V  L  G  D  M  S  T  K  V  K  M  *  T  Q  F  Y  L  M  L  G  F  S  R  R  T  F  L  D  S  S  N  S  A  N  T  E  R  A  *  C  W  S  G  N  K  S  F  M  C  *  T  V  E  T  Y  C  *  G  S  F  V  *  C  W  K  I  D  R :   Y  R  Y  E  A  I  T  *  T  *  N  Q  K  K  V  R  K  I  T  S  S  E  S  R  G  A  K  Y  E  R  N  R  R  W  S  Y  C  *  I  F  G  E  R  A  M  V  C  F  C  S  K  A  F  Q  G  Q  V  T  T  K  T  L  H  C  F  V  F  F  S  L  P  V  A  L  Q  Q  F  L  Y  N  M  A  C  N  *  I  D  N  W  Q  N  R  *  K  E  M  H  F  D  </second_frame>
            <third_frame>   S  N  R  H  E  N  D  S  G  S  F  *  I  S  V  S  *  K  F  V  K  I  Q  L  N  *  V  P  Y  N  L  D  F  S  F  C  D  L  K  V  V  C  F  V  L  L  H  Y  A  P  Q  M  I  R  W  I  L  Y  L  L  K  F  F  V  S  L  S  T  V  N  D  A  L  Y  H  R  P  F  L  F  A  D  *  F  C  *  M  Y  L  V  T  *  V  L  R  S  K  C  E  H  N  S  I  *  C  *  A  F  P  E  E  L  F  S  I  L  R  T  L  Q  I  L  R  G  L  S  V  G  L  G  I  S  H  S  C  A  E  Q  W  R  P  I  A  E  E  A  L  Y  N  A  G  R  L  T   : D  I  D  M  K  R  S  H  R  H  R  T  R  R  K  S  G  K  *  H  L  A  S  Q  E  E  Q  S  M  N  E  I  G  D  G  H  I  A  K  F  L  E  K  E  Q  W  F  A  F  V  A  K  L  F  K  D  K  *  P  Q  K  H  Y  I  A  L  Y  F  F  L  F  L  W  P  C  N  N  F  C  T  T  W  P  V  I  E  L  I  I  G  K  T  G  K  K  R  C  I  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22579" stop="22435"/>
                    <exon start="22113" stop="22058"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFPEELFSILRTLQILRGLSVGLGISHSCAEQWRPIAEEALYNAGRLTDIDMKRSHRHRTRRKSGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="30417" e_stop="29847"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="30417" e_stop="29847" e_length="571"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30417" stop="29847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477177" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGTTTTGTATTTTGCCTCCAGAGGCCAGCCAAATTAGGTGGAAGGAAATGTGGCTATGTTGCATTGCAGAATATTTGCTGACACCTGAAAATTTCCTACTTCATTCACTGGATATAAACATGATTTTTCTCTTCTAAGATAACTTACTTTATGAAAGATGGCTCTTCGTAGCCATTGTAGATTTCTGTTCATCTAAATATTGAGGAAACACTTTGGTACAGTAATTCCAAAAGCTTCATGCAATGTAAGTCTTCTTTATAGGTAGTTTCAATTAGCTGGATGGTGCATTATGATCTGTATTGATGGTATGATTGCGAATTATTTTGATGATATCTGTTGTTTCTCACAAATGTTCTTAAAGACAACTCATCTCAGTTGTTTGCTCATGGCTTTACATGCAACTTGGTATTTACCTTGTCATCTCCTATTTCAGCTTAGATTAAGTACAACAATGATTTTTCTTATCCTCTTGCTTTAACAAAGTGGTTTCACTTATTACATGTTAGATCGGATATGAATTCAACTTTTTGAGAGAGGCTGATGCAATGGATAGAATTCGGCGTTTTCTC</gDNA_template>
            <first_frame> A  V  L  Y  F  A  S  R  G  Q  P  N  *  V  E  G  N  V  A  M  L  H  C  R  I  F  A  D  T  *  K  F  P  T  S  F  T  G  Y  K  H  D  F  S  L  L  R  *  L  T  L  *  K  M  A  L  R  S  H  C  R  F  L  F  I  *  I  L  R  K  H  F  G  T  V  I  P  K  A  S  C  N  V  S  L  L  Y  R  *  F  Q  L  A  G  W  C  I  M  I  C  I  D  G  M  I  A  N  Y  F  D  D  I  C  C  F  S  Q  M  F  L  K  T  T  H  L  S  C  L  L  M  A  L  H  A  T  W  Y  L  P  C  H  L  L  F  Q  L  R  L  S  T  T  M  I  F  L  I  L  L  L  *  Q  S  G  F  T  Y  Y  M  L  D  R  I  *  I  Q  L  F  E  R  G  *  C  N  G  *  N  S  A  F  S  </first_frame>
            <second_frame>  Q  F  C  I  L  P  P  E  A  S  Q  I  R  W  K  E  M  W  L  C  C  I  A  E  Y  L  L  T  P  E  N  F  L  L  H  S  L  D  I  N  M  I  F  L  F  *  D  N  L  L  Y  E  R  W  L  F  V  A  I  V  D  F  C  S  S  K  Y  *  G  N  T  L  V  Q  *  F  Q  K  L  H  A  M  *  V  F  F  I  G  S  F  N  *  L  D  G  A  L  *  S  V  L  M  V  *  L  R  I  I  L  M  I  S  V  V  S  H  K  C  S  *  R  Q  L  I  S  V  V  C  S  W  L  Y  M  Q  L  G  I  Y  L  V  I  S  Y  F  S  L  D  *  V  Q  Q  *  F  F  L  S  S  C  F  N  K  V  V  S  L  I  T  C  *  I  G  Y  E  F  N  F  L  R  E  A  D  A  M  D  R  I  R  R  F  L </second_frame>
            <third_frame>   S  F  V  F  C  L  Q  R  P  A  K  L  G  G  R  K  C  G  Y  V  A  L  Q  N  I  C  *  H  L  K  I  S  Y  F  I  H  W  I  *  T  *  F  F  S  S  K  I  T  Y  F  M  K  D  G  S  S  *  P  L  *  I  S  V  H  L  N  I  E  E  T  L  W  Y  S  N  S  K  S  F  M  Q  C  K  S  S  L  *  V  V  S  I  S  W  M  V  H  Y  D  L  Y  *  W  Y  D  C  E  L  F  *  *  Y  L  L  F  L  T  N  V  L  K  D  N  S  S  Q  L  F  A  H  G  F  T  C  N  L  V  F  T  L  S  S  P  I  S  A  *  I  K  Y  N  N  D  F  S  Y  P  L  A  L  T  K  W  F  H  L  L  H  V  R  S  D  M  N  S  T  F  *  E  R  L  M  Q  W  I  E  F  G  V  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30150" stop="29938"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQLAGWCIMICIDGMIANYFDDICCFSQMFLKTTHLSCLLMALHATWYLPCHLLFQLRLSTTMIFLILLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="41341" PGL_stop="40770"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41341" e_stop="40770"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="41341" e_stop="40770" e_length="572"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41341" stop="40770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41340" stop="40933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTATGATTGCAGACTTAAAAGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGATTTAAATAATTTCCTTAAGATCGTTGCCAATCTGTGTTATGAAAATCAGAAATTACTGATTGTAATAAATCATTCAGAAACACAAAGTAACTGAGATTTTTAGAACCGGTAAATAAGATGAACAGAAATTTATTTGTAAAAAATAATTGAATCTGTAAAACTTACCAGAATCTAGAATACTCTTTTTGATAATTTAGGAAGAAAATCAATTCCACTGAATTCACAGTGTCCCCTTAAAGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCGGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAACAGGAAAGTACACGAAGAAATATGTGTTTTTAAGAAGAAGGAAGATCAGAAAATTCGTTTGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAAGAATATATTCTAAAAGGTTGCAACCCTTTCAGAATTGACATGACCATTAA</gDNA_template>
            <first_frame> I  M  I  A  D  L  K  E  Y  K  I  T  K  I  F  V  S  T  R  N  T  D  L  N  N  F  L  K  I  V  A  N  L  C  Y  E  N  Q  K  L  L  I  V  I  N  H  S  E  T  Q  S  N  *  D  F  *  N  R  *  I  R  *  T  E  I  Y  L  *  K  I  I  E  S  V  K  L  T  R  I  *  N  T  L  F  D  N  L  G  R  K  S  I  P  L  N  S  Q  C  P  L  K  E  I  I  P  L  *  Y  P  R  F  D  L  E  Y  N  L  P  G  *  N  D  L  N  Q  *  S  I  D  T  K  N  S  T  V  S  E  S  I  H  N  R  K  V  H  E  E  I  C  V  F  K  K  K  E  D  Q  K  I  R  L  *  I  F  *  R  L  N  G  I  Y  R  Q  E  E  Y  I  L  K  G  C  N  P  F  R  I  D  M  T  I   </first_frame>
            <second_frame>  L  *  L  Q  T  *  K  S  I  K  S  Q  R  F  L  S  P  P  E  T  Q  I  *  I  I  S  L  R  S  L  P  I  C  V  M  K  I  R  N  Y  *  L  *  *  I  I  Q  K  H  K  V  T  E  I  F  R  T  G  K  *  D  E  Q  K  F  I  C  K  K  *  L  N  L  *  N  L  P  E  S  R  I  L  F  L  I  I  *  E  E  N  Q  F  H  *  I  H  S  V  P  L  K  K  L  F  P  S  S  I  R  G  L  I  W  N  I  T  S  R  G  K  M  I  L  I  S  R  V  *  I  P  K  T  L  L  S  A  N  Q  S  T  T  G  K  Y  T  K  K  Y  V  F  L  R  R  R  K  I  R  K  F  V  C  K  Y  S  E  D  *  M  V  F  I  G  K  K  N  I  F  *  K  V  A  T  L  S  E  L  T  *  P  L  </second_frame>
            <third_frame>   Y  D  C  R  L  K  R  V  *  N  H  K  D  F  C  L  H  Q  K  H  R  F  K  *  F  P  *  D  R  C  Q  S  V  L  *  K  S  E  I  T  D  C  N  K  S  F  R  N  T  K  *  L  R  F  L  E  P  V  N  K  M  N  R  N  L  F  V  K  N  N  *  I  C  K  T  Y  Q  N  L  E  Y  S  F  *  *  F  R  K  K  I  N  S  T  E  F  T  V  S  P  *  R  N  Y  S  P  L  V  S  E  V  *  F  G  I  *  P  P  G  V  K  *  S  *  S  V  E  Y  R  Y  Q  K  L  Y  C  Q  R  I  N  P  Q  Q  E  S  T  R  R  N  M  C  F  *  E  E  G  R  S  E  N  S  F  V  N  I  L  K  T  E  W  Y  L  *  A  R  R  I  Y  S  K  R  L  Q  P  F  Q  N  *  H  D  H  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0030C22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="41791" PGL_stop="42184"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41791" e_stop="42184"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="41791" e_stop="42184" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41791" stop="42184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41795" stop="42156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAGTAAAACTGTTGGGTCACAAGTGCAGGAACTTCAACTTATTCTCGATGATCTGATTGCTGAAGATATGGTAGTAAATGAGCTTTTGAAGTGGCTGCAATGATCTAGAAGTTGCCTCCTTCGTGAAATGATTTCAACAATTATCTAAAGCACAAGCATAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAATTCAACAATCATTAGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCTAACGGGCAAAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATTTTCTGA</gDNA_template>
            <first_frame> D  S  K  T  V  G  S  Q  V  Q  E  L  Q  L  I  L  D  D  L  I  A  E  D  M  V  V  N  E  L  L  K  W  L  Q  *  S  R  S  C  L  L  R  E  M  I  S  T  I  I  *  S  T  S  I  K  K  *  S  L  K  I  L  *  F  V  S  R  L  R  K  I  T  E  M  P  K  R  S  R  V  R  I  Q  Q  S  L  E  L  I  L  L  K  K  L  L  P  K  T  K  R  E  R  S  L  T  G  K  S  Q  N  R  P  R  R  N  S  K  A  T  V  I  I  V  A  R  L  V  I  D  F  L  </first_frame>
            <second_frame>  I  V  K  L  L  G  H  K  C  R  N  F  N  L  F  S  M  I  *  L  L  K  I  W  *  *  M  S  F  *  S  G  C  N  D  L  E  V  A  S  F  V  K  *  F  Q  Q  L  S  K  A  Q  A  *  R  N  E  A  *  R  S  C  D  S  S  Q  D  *  G  R  *  Q  K  C  R  K  E  V  A  *  E  F  N  N  H  *  S  *  Y  C  *  R  S  S  Y  Q  R  Q  K  E  K  E  V  *  R  A  K  V  R  T  G  Q  E  E  I  Q  R  Q  L  L  *  L  W  Q  G  W  S  *  I  F  * </second_frame>
            <third_frame>   *  *  N  C  W  V  T  S  A  G  T  S  T  Y  S  R  *  S  D  C  *  R  Y  G  S  K  *  A  F  E  V  A  A  M  I  *  K  L  P  P  S  *  N  D  F  N  N  Y  L  K  H  K  H  K  E  M  K  L  E  D  L  V  I  R  L  K  I  E  E  D  N  R  N  A  E  K  K  S  R  K  N  S  T  I  I  R  V  N  I  V  E  E  A  P  T  K  D  K  K  R  K  K  S  N  G  Q  K  S  E  Q  A  K  K  K  F  K  G  N  C  Y  N  C  G  K  A  G  H  R  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41919" stop="42182"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDFNNYLKHKHKEMKLEDLVIRLKIEEDNRNAEKKSRKNSTIIRVNIVEEAPTKDKKRKKSNGQKSEQAKKKFKGNCYNCGKAGHRFS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41980" stop="42183"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVSRLRKITEMPKRSRVRIQQSLELILLKKLLPKTKRERSLTGKSQNRPRRNSKATVIIVARLVIDFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="46903" PGL_stop="45880"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46903" e_stop="46118"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="46903" e_stop="46118" e_length="786"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46903" stop="46118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTATTGTTGTTGTCAATCTGTGTTATGAAAATCAGAAATTACTGATTGTAATAAATCATTCAGAAACACAAAGTAACTGAAATTTTTAGAACCAATAAATAAGATGAACAGAAATTTATTTGTAAAAAATAATTGAATCTGTAAAACTTACCAGAATCTGGGATACTCTTTTTGATAATGTAGGAATAAAAATCAAGTCCACTGAATTCACAATGTCCCCTTAAGGAAATTGTTTCCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCGGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAATATGTGTTTTTAAGAAGAAGGAAGATCAGAAAATTCGTTTGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAAGAATATATGCTGAAAGGTTGCAACCCTTTCAGAATTGACATGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGTAATTTTTAAATATAACGAAATTTAAAACGGGTCACGCGCGCGGATCCGAGTCGGGTCGGATTAACTTTGTTGAAAACATTTCGGTTAACTTCTGTTATCAACTAATTAATTGAAAATATTTTTGTCCATTTAATTAATTAAATAAATAAATAAAATAAATTTGTCCAAAAAATTATCTCTCGATCGATCATTTGCCAAAGCCAAAGCCGAAGCCGAAGCGA</gDNA_template>
            <first_frame> I  I  V  V  V  N  L  C  Y  E  N  Q  K  L  L  I  V  I  N  H  S  E  T  Q  S  N  *  N  F  *  N  Q  *  I  R  *  T  E  I  Y  L  *  K  I  I  E  S  V  K  L  T  R  I  W  D  T  L  F  D  N  V  G  I  K  I  K  S  T  E  F  T  M  S  P  *  G  N  C  F  P  L  V  S  E  V  *  F  G  I  *  P  P  G  V  K  *  S  *  S  V  E  Y  R  Y  Q  K  L  Y  C  Q  R  I  N  P  Q  Q  E  S  T  R  R  N  M  C  F  *  E  E  G  R  S  E  N  S  F  V  N  I  L  K  T  E  W  Y  L  *  A  R  R  I  Y  A  E  R  L  Q  P  F  Q  N  *  H  D  H  *  *  K  V  A  N  F  Q  M  V  L  T  V  P  E  S  C  N  L  S  E  Q  W  R  *  F  L  N  I  T  K  F  K  T  G  H  A  R  G  S  E  S  G  R  I  N  F  V  E  N  I  S  V  N  F  C  Y  Q  L  I  N  *  K  Y  F  C  P  F  N  *  L  N  K  *  I  K  *  I  C  P  K  N  Y  L  S  I  D  H  L  P  K  P  K  P  K  P  K  R </first_frame>
            <second_frame>  L  L  L  L  S  I  C  V  M  K  I  R  N  Y  *  L  *  *  I  I  Q  K  H  K  V  T  E  I  F  R  T  N  K  *  D  E  Q  K  F  I  C  K  K  *  L  N  L  *  N  L  P  E  S  G  I  L  F  L  I  M  *  E  *  K  S  S  P  L  N  S  Q  C  P  L  K  E  I  V  S  L  *  Y  P  R  F  D  L  E  Y  N  L  P  G  *  N  D  L  N  Q  *  S  I  D  T  K  N  S  T  V  S  E  S  I  H  S  R  K  V  H  E  E  I  C  V  F  K  K  K  E  D  Q  K  I  R  L  *  I  F  *  R  L  N  G  I  Y  R  Q  E  E  Y  M  L  K  G  C  N  P  F  R  I  D  M  T  I  N  E  R  L  Q  T  F  K  W  Y  *  L  F  L  K  V  A  T  F  Q  N  S  G  G  N  F  *  I  *  R  N  L  K  R  V  T  R  A  D  P  S  R  V  G  L  T  L  L  K  T  F  R  L  T  S  V  I  N  *  L  I  E  N  I  F  V  H  L  I  N  *  I  N  K  *  N  K  F  V  Q  K  I  I  S  R  S  I  I  C  Q  S  Q  S  R  S  R  S   </second_frame>
            <third_frame>   Y  C  C  C  Q  S  V  L  *  K  S  E  I  T  D  C  N  K  S  F  R  N  T  K  *  L  K  F  L  E  P  I  N  K  M  N  R  N  L  F  V  K  N  N  *  I  C  K  T  Y  Q  N  L  G  Y  S  F  *  *  C  R  N  K  N  Q  V  H  *  I  H  N  V  P  L  R  K  L  F  P  S  S  I  R  G  L  I  W  N  I  T  S  R  G  K  M  I  L  I  S  R  V  *  I  P  K  T  L  L  S  A  N  Q  S  T  A  G  K  Y  T  K  K  Y  V  F  L  R  R  R  K  I  R  K  F  V  C  K  Y  S  E  D  *  M  V  F  I  G  K  K  N  I  C  *  K  V  A  T  L  S  E  L  T  *  P  L  M  K  G  C  K  L  S  N  G  I  D  C  S  *  K  L  Q  P  F  R  T  V  A  V  I  F  K  Y  N  E  I  *  N  G  S  R  A  R  I  R  V  G  S  D  *  L  C  *  K  H  F  G  *  L  L  L  S  T  N  *  L  K  I  F  L  S  I  *  L  I  K  *  I  N  K  I  N  L  S  K  K  L  S  L  D  R  S  F  A  K  A  K  A  E  A  E  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0030C22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46588" e_stop="46330"/>
            <exon e_start="46168" e_stop="45880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.927"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="46588" e_stop="46330" e_length="259"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46329" i_stop="46169" i_length="161"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="46168" e_stop="45880" e_length="289"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46588" stop="46330"/>
              <exon start="46168" stop="45880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46588" stop="46330"/>
              <exon start="46168" stop="45880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689001" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAATATGTGTTTTTAAGAAGAAGGAAGATCAGAAAATTCGTTTGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAAGAATATATGCTGAAAGGTTGCAACCCTTTCAGAATTGACATGACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGTAATTTTTAA : AATTATCTCTCGATCGATCATTTGCCAAAGCCAAAGCCGAAGCCGAAGCGAGCGAGCGAGCGATGACGACGGCGCGAGGGGGATCCCTCTTTCCAACCCTTTTAACAATTAATAGGAGTGTTTATTTATTTAAACTCTCCTATTTTCATTTCCATTACCGATGAGGGACTATTGCCTTTTTCATTAAAGCATAAGAGGACTTTTCAAGATCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAACA</gDNA_template>
            <first_frame> K  L  Y  C  Q  R  I  N  P  Q  Q  E  S  T  R  R  N  M  C  F  *  E  E  G  R  S  E  N  S  F  V  N  I  L  K  T  E  W  Y  L  *  A  R  R  I  Y  A  E  R  L  Q  P  F  Q  N  *  H  D  H  *  *  K  V  A  N  F  Q  M  V  L  T  V  P  E  S  C  N  L  S  E  Q  W  R  *  F  L   : K  L  S  L  D  R  S  F  A  K  A  K  A  E  A  E  A  S  E  R  A  M  T  T  A  R  G  G  S  L  F  P  T  L  L  T  I  N  R  S  V  Y  L  F  K  L  S  Y  F  H  F  H  Y  R  *  G  T  I  A  F  F  I  K  A  *  E  D  F  S  R  S  Q  P  F  K  F  *  T  F  Q  I  P  L  L  P  S  I  S  H  Q  F  L  L  H  T  Q   </first_frame>
            <second_frame>  N  S  T  V  S  E  S  I  H  S  R  K  V  H  E  E  I  C  V  F  K  K  K  E  D  Q  K  I  R  L  *  I  F  *  R  L  N  G  I  Y  R  Q  E  E  Y  M  L  K  G  C  N  P  F  R  I  D  M  T  I  N  E  R  L  Q  T  F  K  W  Y  *  L  F  L  K  V  A  T  F  Q  N  S  G  G  N  F  *  :  N  Y  L  S  I  D  H  L  P  K  P  K  P  K  P  K  R  A  S  E  R  *  R  R  R  E  G  D  P  S  F  Q  P  F  *  Q  L  I  G  V  F  I  Y  L  N  S  P  I  F  I  S  I  T  D  E  G  L  L  P  F  S  L  K  H  K  R  T  F  Q  D  P  N  L  S  S  S  K  L  F  K  F  L  S  F  P  L  F  P  I  N  S  C  Y  I  P  N  </second_frame>
            <third_frame>   T  L  L  S  A  N  Q  S  T  A  G  K  Y  T  K  K  Y  V  F  L  R  R  R  K  I  R  K  F  V  C  K  Y  S  E  D  *  M  V  F  I  G  K  K  N  I  C  *  K  V  A  T  L  S  E  L  T  *  P  L  M  K  G  C  K  L  S  N  G  I  D  C  S  *  K  L  Q  P  F  R  T  V  A  V  I  F  K :   I  I  S  R  S  I  I  C  Q  S  Q  S  R  S  R  S  E  R  A  S  D  D  D  G  A  R  G  I  P  L  S  N  P  F  N  N  *  *  E  C  L  F  I  *  T  L  L  F  S  F  P  L  P  M  R  D  Y  C  L  F  H  *  S  I  R  G  L  F  K  I  P  T  F  Q  V  L  N  F  S  N  S  S  P  S  L  Y  F  P  S  I  L  A  T  Y  P  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0030C22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="67999" PGL_stop="61939"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67999" e_stop="67803"/>
            <exon e_start="67696" e_stop="67582"/>
            <exon e_start="64479" e_stop="64389"/>
            <exon e_start="64293" e_stop="64148"/>
            <exon e_start="64045" e_stop="63826"/>
            <exon e_start="63681" e_stop="63573"/>
            <exon e_start="62586" e_stop="62418"/>
            <exon e_start="62329" e_stop="61939"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.839" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.874" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67999" e_stop="67803" e_length="197"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.989">
            <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67696" e_stop="67582" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.890">
            <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64479" e_stop="64389" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64293" e_stop="64148" e_length="146"/>
          </exon>
          <intron i_serial="4" don_prob="0.839" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64045" e_stop="63826" e_length="220"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63825" i_stop="63682" i_length="144"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="63681" e_stop="63573" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="0.874" acc_prob="0.970">
            <gDNA_intron_boundary i_start="63572" i_stop="62587" i_length="986"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="62586" e_stop="62418" e_length="169"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62417" i_stop="62330" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="0.987">
            <gDNA_exon_boundary e_start="62329" e_stop="61939" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67999" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64148"/>
              <exon start="64045" stop="63829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67998" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67996" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64148"/>
              <exon start="64045" stop="64020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67994" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64148"/>
              <exon start="64045" stop="63826"/>
              <exon start="63681" stop="63573"/>
              <exon start="62586" stop="62548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67983" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67983" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67970" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64148"/>
              <exon start="64045" stop="63826"/>
              <exon start="63681" stop="63672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67970" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64148"/>
              <exon start="64045" stop="63944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67970" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67969" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64148"/>
              <exon start="64045" stop="63994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67968" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67967" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64148"/>
              <exon start="64045" stop="64012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67967" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67966" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64148"/>
              <exon start="64045" stop="63826"/>
              <exon start="63681" stop="63643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67960" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64148"/>
              <exon start="64045" stop="63953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67949" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64148"/>
              <exon start="64045" stop="64020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67944" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67942" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64148"/>
              <exon start="64045" stop="63875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67938" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64148"/>
              <exon start="64045" stop="63859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67933" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64148"/>
              <exon start="64045" stop="63874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67929" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64148"/>
              <exon start="64045" stop="63892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67898" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64148"/>
              <exon start="64045" stop="63826"/>
              <exon start="63681" stop="63573"/>
              <exon start="62586" stop="62418"/>
              <exon start="62329" stop="62018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64442" stop="64389"/>
              <exon start="64293" stop="64148"/>
              <exon start="64045" stop="63826"/>
              <exon start="63681" stop="63585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64409" stop="64389"/>
              <exon start="64293" stop="64148"/>
              <exon start="64045" stop="63826"/>
              <exon start="63681" stop="63573"/>
              <exon start="62586" stop="62493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64288" stop="64148"/>
              <exon start="64045" stop="63826"/>
              <exon start="63681" stop="63573"/>
              <exon start="62586" stop="62548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64286" stop="64148"/>
              <exon start="64045" stop="63826"/>
              <exon start="63681" stop="63573"/>
              <exon start="62586" stop="62421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64279" stop="64148"/>
              <exon start="64045" stop="63829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64230" stop="64148"/>
              <exon start="64045" stop="63826"/>
              <exon start="63681" stop="63573"/>
              <exon start="62586" stop="62545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64198" stop="64148"/>
              <exon start="64045" stop="63826"/>
              <exon start="63681" stop="63573"/>
              <exon start="62586" stop="62418"/>
              <exon start="62329" stop="62157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63989" stop="63826"/>
              <exon start="63681" stop="63573"/>
              <exon start="62586" stop="62418"/>
              <exon start="62329" stop="62057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63947" stop="63826"/>
              <exon start="63681" stop="63573"/>
              <exon start="62586" stop="62418"/>
              <exon start="62329" stop="61976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63872" stop="63826"/>
              <exon start="63681" stop="63573"/>
              <exon start="62586" stop="62418"/>
              <exon start="62329" stop="62036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481447" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63871" stop="63826"/>
              <exon start="63681" stop="63573"/>
              <exon start="62586" stop="62418"/>
              <exon start="62329" stop="62129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63837" stop="63826"/>
              <exon start="63681" stop="63573"/>
              <exon start="62586" stop="62418"/>
              <exon start="62329" stop="62030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63837" stop="63826"/>
              <exon start="63681" stop="63573"/>
              <exon start="62586" stop="62418"/>
              <exon start="62329" stop="62034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63837" stop="63826"/>
              <exon start="63681" stop="63573"/>
              <exon start="62586" stop="62418"/>
              <exon start="62329" stop="62089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63836" stop="63826"/>
              <exon start="63681" stop="63573"/>
              <exon start="62586" stop="62418"/>
              <exon start="62329" stop="62034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63836" stop="63826"/>
              <exon start="63681" stop="63573"/>
              <exon start="62586" stop="62418"/>
              <exon start="62329" stop="62035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62552" stop="62418"/>
              <exon start="62329" stop="62009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62451" stop="62418"/>
              <exon start="62329" stop="61939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62439" stop="62418"/>
              <exon start="62329" stop="62002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62286" stop="62012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62285" stop="62026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62282" stop="62009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62282" stop="62012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62136" stop="61956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279665" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTTACACCCTTTCGCAAGCAAAGTATCTGAAAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATG : ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAA : GATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAG : GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAA : ATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAAAAG : GTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTG : CTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTT : GGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGATTTTCTGTGTTGGGATAGCTCTTATATTTGGACAAGCATTGCATCTTTTGAAATGTTACTTCCTATTTAAGTTTGTGCTCAGCTGAT</gDNA_template>
            <first_frame> L  F  T  P  F  R  K  Q  S  I  *  K  L  V  K  S  L  R  E  N  Y  G  F  G  R  R  N  P  T  T  P  A  S  S  C  T  Q  T  I  P  F  D  T  S  R  C  Q  *  L  G  *  S  S  S  S  *  R  S  L  G  S  C  G  L  Q  * :   Y  G  S  V  V  *  N  P  S  F  K  R  G  F  *  F  E  S  G  G  S  *  S  Y  A  C  *  E  R  *  *  A  *  K  T  R  *  E  :  D  C  *  C  R  R  K  S  W  *  K  *  S  S  R  S  S  F  G  *  I  I  V  L  H  *  N  W  *  Q   : G  E  S  T  *  T  T  Q  G  D  *  E  K  N  C  C  S  W  A  K  D  G  P  S  V  L  Y  L  A  D  G  I  I  *  L  G  F  *  P  H  L  *  M  H  R  *  G  K  E  :  I  I  R  K  G  G  *  L  G  E  K  E  Q  V  E  G  V  *  R  V  V  L  H  V  H  S  *  L  Q  E  S  S  R  S  F  P  *  F  Y  L  N  F  Y  H  I  *  A  F  P  L  *  Y  F  H  I  L  Y  C  P  Y  E  H  H  Y  L  G  P  G  F  L  E  T  K   : G  R  G  C  A  R  D  L  D  C  N  W  K  D  S  I  S  V  R  V  Y  E  L  V  I  *  L  S  I  Q  V  I  F  L  S  I  C :   W  L  D  G  A  Y  *  I  G  S  L  L  A  T  T  L  Q  I  L  Y  E  G  G  Q  N  S  C  V  F  P  V  P  G  V  L  Q  E  C  Y  Y  *  G  H  G  Q  G  F  W  G  V  *  G  F  H  R  L  :  G  T  I  S  V  H  C  S  W  E  V  A  L  Q  D  *  *  S  S  R  S  I  G  N  *  S  S  *  C  K  E  C  S  L  S  G  N  Y  Q  A  R  G  L  L  V  E  S  H  S  K  A  F  S  C  H  *  S  L  K  P  L  N  R  A  L  Y  L  F  S  L  Q  L  S  V  A  L  I  L  I  Y  S  A  F  S  Y  *  T  L  G  G  V  L  F  *  *  F  S  E  I  K  E  I  F  C  V  G  I  A  L  I  F  G  Q  A  L  H  L  L  K  C  Y  F  L  F  K  F  V  L  S  *  </first_frame>
            <second_frame>  F  L  H  P  F  A  S  K  V  S  E  N  *  *  N  L  *  E  R  T  M  D  S  E  E  G  T  Q  Q  P  Q  L  V  L  A  H  K  L  F  L  L  T  H  P  D  V  N  D  L  D  K  V  R  L  R  E  E  V  L  E  A  V  V  S  N   : D  M  A  P  L  F  E  T  L  V  S  K  G  V  F  S  L  N  L  E  V  L  D  P  M  R  V  K  N  A  D  E  L  K  K  L  D  E  K :   I  A  D  A  E  E  N  L  G  E  S  E  V  R  E  A  H  L  A  K  S  L  F  Y  I  R  I  G  D  K  :  G  K  A  L  E  Q  L  K  V  T  E  K  K  T  V  A  V  G  Q  K  M  D  L  V  F  Y  T  L  Q  M  G  L  F  D  L  D  F  D  L  I  S  K  C  I  D  K  A  K  K :   L  F  E  K  G  G  D  W  E  R  K  N  R  L  K  V  Y  E  G  L  F  C  M  S  T  R  N  F  K  K  A  A  D  L  F  L  D  S  I  S  T  F  T  T  Y  E  L  F  P  Y  D  T  F  I  F  Y  T  V  L  T  S  I  I  T  L  D  R  V  S  L  K  Q  K  :  V  V  D  A  P  E  I  L  T  V  I  G  K  I  P  Y  L  S  E  F  M  N  S  L  Y  D  C  Q  Y  K  S  F  F  S  A  F   : A  G  L  M  E  H  I  K  L  D  R  Y  L  Q  P  H  F  R  Y  Y  M  R  E  V  R  T  V  V  Y  S  Q  F  L  E  S  Y  K  S  V  T  I  E  A  M  A  K  A  F  G  V  S  E  D  F  I  D  L :   E  L  S  R  F  I  A  A  G  K  L  H  C  K  I  D  K  V  A  G  V  L  E  T  N  R  P  D  A  K  N  A  L  Y  Q  A  T  I  K  Q  G  D  F  L  L  N  R  I  Q  K  L  S  R  V  I  D  L  *  S  R  *  T  V  R  Y  T  C  F  L  F  N  S  L  *  L  *  Y  *  Y  I  L  P  F  H  I  E  L  L  G  E  Y  Y  F  S  N  F  L  K  S  K  R  F  S  V  L  G  *  L  L  Y  L  D  K  H  C  I  F  *  N  V  T  S  Y  L  S  L  C  S  A  D </second_frame>
            <third_frame>   F  Y  T  L  S  Q  A  K  Y  L  K  T  S  E  I  F  E  R  E  L  W  I  R  K  K  E  P  N  N  P  S  *  F  L  H  T  N  Y  S  F  *  H  I  Q  M  S  M  T  W  I  K  F  V  F  V  K  K  S  W  K  L  W  S  P  M  :  I  W  L  R  C  L  K  P  *  F  Q  K  G  F  L  V  *  I  W  R  F  L  I  L  C  V  L  R  T  L  M  S  L  K  N  S  M  R   : R  L  L  M  Q  K  K  I  L  V  K  V  K  F  E  K  L  I  W  L  N  H  C  S  T  L  E  L  V  T  R :   G  K  H  L  N  N  S  R  *  L  R  K  K  L  L  Q  L  G  K  R  W  T  *  C  S  I  P  C  R  W  D  Y  L  T  W  I  L  T  S  S  L  N  A  *  I  R  Q  R   : N  Y  S  K  R  G  V  T  G  R  E  R  T  G  *  R  C  M  K  G  C  S  A  C  P  L  V  T  S  R  K  Q  Q  I  F  S  L  I  L  S  Q  L  L  P  H  M  S  F  S  P  M  I  L  S  Y  F  I  L  S  L  R  A  S  L  P  W  T  G  F  P  *  N  K  R :   S  W  M  R  Q  R  S  *  L  *  L  E  R  F  H  I  C  P  S  L  *  T  R  Y  M  I  V  N  T  S  H  F  S  Q  H  L  :  L  A  *  W  S  I  L  N  W  I  V  T  C  N  H  T  S  D  I  I  *  G  R  S  E  Q  L  C  I  P  S  S  W  S  P  T  R  V  L  L  L  R  P  W  P  R  L  L  G  C  L  R  I  S  S  T   : W  N  Y  L  G  S  L  Q  L  G  S  C  I  A  R  L  I  K  *  Q  E  Y  W  K  L  I  V  L  M  Q  R  M  L  F  I  R  Q  L  S  S  K  G  T  S  C  *  I  A  F  K  S  F  L  V  S  L  I  S  E  A  V  K  P  C  V  I  L  V  F  S  S  T  L  C  S  S  N  I  D  I  F  C  L  F  I  L  N  S  W  G  S  I  I  L  V  I  F  *  N  Q  R  D  F  L  C  W  D  S  S  Y  I  W  T  S  I  A  S  F  E  M  L  L  P  I  *  V  C  A  Q  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67947" stop="67803"/>
                    <exon start="67696" stop="67582"/>
                    <exon start="64479" stop="64389"/>
                    <exon start="64293" stop="64148"/>
                    <exon start="64045" stop="63826"/>
                    <exon start="63681" stop="63573"/>
                    <exon start="62586" stop="62418"/>
                    <exon start="62329" stop="62155"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1167</number_coding_nucleotides>
                  <number_encoded_amino_acids>389</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERTMDSEEGTQQPQLVLAHKLFLLTHPDVNDLDKVRLREEVLEAVVSNDMAPLFETLVSKGVFSLNLEVLDPMRVKNADELKKLDEKIADAEENLGESEVREAHLAKSLFYIRIGDKGKALEQLKVTEKKTVAVGQKMDLVFYTLQMGLFDLDFDLISKCIDKAKKLFEKGGDWERKNRLKVYEGLFCMSTRNFKKAADLFLDSISTFTTYELFPYDTFIFYTVLTSIITLDRVSLKQKVVDAPEILTVIGKIPYLSEFMNSLYDCQYKSFFSAFAGLMEHIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVSEDFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="71236" PGL_stop="71955"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71236" e_stop="71955"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="71236" e_stop="71955" e_length="720"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71236" stop="71721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71662" stop="71955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCACAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCATTTTGGGTCCTTCCCAGCCACCCCTAAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAATCCAAAACCTTTTAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGACTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCTTGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGACAGTATTTCCAGGTACAAGACTCGTTTGGTTGCTAAAGGCTACAATTAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCTTGTTATTCGGCAGAAAACCATTCGCCTGGTACTGTCACTTGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTAGAACCACCGAGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCTAGCAAGCCCCCCGTGCTTGATACACACGTTTGAAAATATT</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  P  I  P  T  T  S  P  A  R  S  I  L  G  P  S  Q  P  P  L  N  H  H  R  P  C  H  P  P  I  L  I  P  C  *  P  V  A  K  P  V  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  P  I  V  N  Q  Q  P  T  L  L  T  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  I  R  K  L  G  F  L  Y  L  S  P  L  G  G  T  Q  W  A  V  N  G  C  T  K  L  N  T  M  Q  M  T  V  F  P  G  T  R  L  V  W  L  L  K  A  T  I  R  S  M  G  L  I  T  P  R  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  C  H  L  P  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  R  T  T  E  L  C  *  S  P  L  P  S  T  C  L  Q  T  P  E  V  S  V  W  A  L  A  S  P  P  C  L  I  H  T  F  E  N  I </first_frame>
            <second_frame>  H  P  Q  Y  T  H  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  Q  P  D  P  F  W  V  L  P  S  H  P  *  I  T  T  A  R  A  T  P  Q  Y  S  S  H  V  N  P  W  Q  S  R  Y  L  *  I  Q  N  L  L  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  L  L  C  *  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  R  *  Q  Y  F  Q  V  Q  D  S  F  G  C  *  R  L  Q  L  G  V  W  A  *  L  L  R  D  I  Q  S  C  Y  S  A  E  N  H  S  P  G  T  V  T  C  R  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  E  P  P  S  Y  V  D  P  R  F  P  Q  H  V  C  K  L  Q  K  S  L  Y  G  L  *  Q  A  P  R  A  *  Y  T  R  L  K  I   </second_frame>
            <third_frame>   T  H  N  T  P  T  T  T  T  H  T  H  N  Q  P  E  P  P  H  T  H  N  I  S  S  P  I  H  F  G  S  F  P  A  T  P  K  S  P  P  P  V  P  P  P  N  T  H  P  M  L  T  R  G  K  A  G  I  F  K  S  K  T  F  *  A  T  I  L  P  N  T  P  L  P  D  S  E  P  T  T  Y  S  V  D  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  D  Q  K  T  W  V  L  V  P  K  P  L  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  D  D  S  I  S  R  Y  K  T  R  L  V  A  K  G  Y  N  *  E  Y  G  L  D  Y  S  E  T  F  S  L  V  I  R  Q  K  T  I  R  L  V  L  S  L  A  V  R  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  *  N  H  R  A  M  L  I  P  A  S  L  N  M  F  A  N  S  R  S  L  C  M  G  S  S  K  P  P  V  L  D  T  H  V  *  K  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71545" stop="71862"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIRKLGFLYLSPLGGTQWAVNGCTKLNTMQMTVFPGTRLVWLLKATIRSMGLITPRHSVLLFGRKPFAWYCHLPCATIGSSISWMFPMLFFMACLMKLSRTTELC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71433" stop="71687"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATILPNTPLPDSEPTTYSVDSKNAYWRHAMDDEFKALTDQKTWVLVPKPLGRHPVGCKWVYKIKHNADDSISRYKTRLVAKGYN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71238" stop="71432"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNTPTTTTHTHNQPEPPHTHNISSPIHFGSFPATPKSPPPVPPPNTHPMLTRGKAGIFKSKTF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="108035" PGL_stop="106795"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107811" e_stop="106795"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="107811" e_stop="106795" e_length="1017"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107811" stop="107012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107433" stop="106795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107393" stop="106867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107311" stop="106856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203314" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGATATAACTGACATATCAAAAACTGGAATCCAGGAAACTTCTCATTGTGATAGCACCAATCAAACATGCCAAACTGTAATTTCAGGTAGACACAACCTTTACTCCTACAATAAAACGTTTGATTAAGCAGTGCTGTATCGATCATGTCTACTAATCAAGATTTGAGAATTTCAGGCTCAATGATCTTTGGAGATAATAAGAGCCTGGACTCTGTAGACATCCATGAGTGTCATTCACATGCTCATCCACCCCACAAGGAGGAACCACATCATTCTGTTGGACATGGCTGTTCGGACAAGGAACACGATCATTCACATCCAGAGAAAGCATTTGACAGTTGTGCAACACAAGAATGTTGTTTTTCAGTTCAGGACCACAGCATTGACATATCCGAAAATGGAAGTCAAGGAACTGATCATTGTGACAGCATTAAACAAAGCATGGTCATCCCATGTAGCTGCAAACATACACCACAAGAGAAGGTAAGTCACTGTGGATTTCACTCTACAACTATCCCTACTGATGAAGAACTAGCGAAGCTGGTTAGAAGATGTTGCGATTACAGACCATGCCACAACGTCCGTTCTGGCTGCAGAAATCATGCTACAGAATGTGGTCCAACCACCCGATCAACCATCAATATCTTACGGGACAACCATCATCATCATCATCTAGACTGCAGTGGTCGTAAGGTTTGTTCGCCAATTGAGAAGAGACACATTGGTGGATGCTGTGAGAGCTTCAGAAAAGAATGTTGCCCCAAGAACATTAATCATTTTGCATCAAGTTTTGGAGGAGGTTTATCAGAAATTGTATTAGAGTAAGATGCAATCTTAAAAGTGTAAATATGTTGCAACTTTTCTACCTATTTTATCTTCAAGAAGCTGAGATGCTATTTTGTATGAACTTAGCTATTACCATGGCTTGTATACTAATCCTAAAAATGGTTTGTGTATTTGTTGAATTCTAACAAAGTTGGGAACTTCAATGTCATTTGCATGAAAAAATCAGCTCA</gDNA_template>
            <first_frame> E  I  *  L  T  Y  Q  K  L  E  S  R  K  L  L  I  V  I  A  P  I  K  H  A  K  L  *  F  Q  V  D  T  T  F  T  P  T  I  K  R  L  I  K  Q  C  C  I  D  H  V  Y  *  S  R  F  E  N  F  R  L  N  D  L  W  R  *  *  E  P  G  L  C  R  H  P  *  V  S  F  T  C  S  S  T  P  Q  G  G  T  T  S  F  C  W  T  W  L  F  G  Q  G  T  R  S  F  T  S  R  E  S  I  *  Q  L  C  N  T  R  M  L  F  F  S  S  G  P  Q  H  *  H  I  R  K  W  K  S  R  N  *  S  L  *  Q  H  *  T  K  H  G  H  P  M  *  L  Q  T  Y  T  T  R  E  G  K  S  L  W  I  S  L  Y  N  Y  P  Y  *  *  R  T  S  E  A  G  *  K  M  L  R  L  Q  T  M  P  Q  R  P  F  W  L  Q  K  S  C  Y  R  M  W  S  N  H  P  I  N  H  Q  Y  L  T  G  Q  P  S  S  S  S  S  R  L  Q  W  S  *  G  L  F  A  N  *  E  E  T  H  W  W  M  L  *  E  L  Q  K  R  M  L  P  Q  E  H  *  S  F  C  I  K  F  W  R  R  F  I  R  N  C  I  R  V  R  C  N  L  K  S  V  N  M  L  Q  L  F  Y  L  F  Y  L  Q  E  A  E  M  L  F  C  M  N  L  A  I  T  M  A  C  I  L  I  L  K  M  V  C  V  F  V  E  F  *  Q  S  W  E  L  Q  C  H  L  H  E  K  I  S  S </first_frame>
            <second_frame>  R  Y  N  *  H  I  K  N  W  N  P  G  N  F  S  L  *  *  H  Q  S  N  M  P  N  C  N  F  R  *  T  Q  P  L  L  L  Q  *  N  V  *  L  S  S  A  V  S  I  M  S  T  N  Q  D  L  R  I  S  G  S  M  I  F  G  D  N  K  S  L  D  S  V  D  I  H  E  C  H  S  H  A  H  P  P  H  K  E  E  P  H  H  S  V  G  H  G  C  S  D  K  E  H  D  H  S  H  P  E  K  A  F  D  S  C  A  T  Q  E  C  C  F  S  V  Q  D  H  S  I  D  I  S  E  N  G  S  Q  G  T  D  H  C  D  S  I  K  Q  S  M  V  I  P  C  S  C  K  H  T  P  Q  E  K  V  S  H  C  G  F  H  S  T  T  I  P  T  D  E  E  L  A  K  L  V  R  R  C  C  D  Y  R  P  C  H  N  V  R  S  G  C  R  N  H  A  T  E  C  G  P  T  T  R  S  T  I  N  I  L  R  D  N  H  H  H  H  H  L  D  C  S  G  R  K  V  C  S  P  I  E  K  R  H  I  G  G  C  C  E  S  F  R  K  E  C  C  P  K  N  I  N  H  F  A  S  S  F  G  G  G  L  S  E  I  V  L  E  *  D  A  I  L  K  V  *  I  C  C  N  F  S  T  Y  F  I  F  K  K  L  R  C  Y  F  V  *  T  *  L  L  P  W  L  V  Y  *  S  *  K  W  F  V  Y  L  L  N  S  N  K  V  G  N  F  N  V  I  C  M  K  K  S  A   </second_frame>
            <third_frame>   D  I  T  D  I  S  K  T  G  I  Q  E  T  S  H  C  D  S  T  N  Q  T  C  Q  T  V  I  S  G  R  H  N  L  Y  S  Y  N  K  T  F  D  *  A  V  L  Y  R  S  C  L  L  I  K  I  *  E  F  Q  A  Q  *  S  L  E  I  I  R  A  W  T  L  *  T  S  M  S  V  I  H  M  L  I  H  P  T  R  R  N  H  I  I  L  L  D  M  A  V  R  T  R  N  T  I  I  H  I  Q  R  K  H  L  T  V  V  Q  H  K  N  V  V  F  Q  F  R  T  T  A  L  T  Y  P  K  M  E  V  K  E  L  I  I  V  T  A  L  N  K  A  W  S  S  H  V  A  A  N  I  H  H  K  R  R  *  V  T  V  D  F  T  L  Q  L  S  L  L  M  K  N  *  R  S  W  L  E  D  V  A  I  T  D  H  A  T  T  S  V  L  A  A  E  I  M  L  Q  N  V  V  Q  P  P  D  Q  P  S  I  S  Y  G  T  T  I  I  I  I  I  *  T  A  V  V  V  R  F  V  R  Q  L  R  R  D  T  L  V  D  A  V  R  A  S  E  K  N  V  A  P  R  T  L  I  I  L  H  Q  V  L  E  E  V  Y  Q  K  L  Y  *  S  K  M  Q  S  *  K  C  K  Y  V  A  T  F  L  P  I  L  S  S  R  S  *  D  A  I  L  Y  E  L  S  Y  Y  H  G  L  Y  T  N  P  K  N  G  L  C  I  C  *  I  L  T  K  L  G  T  S  M  S  F  A  *  K  N  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107687" stop="106986"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSSAVSIMSTNQDLRISGSMIFGDNKSLDSVDIHECHSHAHPPHKEEPHHSVGHGCSDKEHDHSHPEKAFDSCATQECCFSVQDHSIDISENGSQGTDHCDSIKQSMVIPCSCKHTPQEKVSHCGFHSTTIPTDEELAKLVRRCCDYRPCHNVRSGCRNHATECGPTTRSTINILRDNHHHHHLDCSGRKVCSPIEKRHIGGCCESFRKECCPKNINHFASSFGGGLSEIVLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="108035" e_stop="107725"/>
            <exon e_start="107635" e_stop="106795"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="0.932"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="108035" e_stop="107725" e_length="311"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="107724" i_stop="107636" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="107635" e_stop="106795" e_length="841"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108035" stop="107725"/>
              <exon start="107635" stop="107143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107433" stop="106795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107393" stop="106867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107311" stop="106856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203314" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCATGCGGAAATCACAAGTGCCAAGACTCTGCAACCGAGCACGGTGTTCATTCACTTACTGATCCACTCTCCGAGGAAGTGATTCTGAAGCAGAAAATCTTGGTTTTGGAATCAAATCATGATCTTAGTCATGGCTGCTGTGAAGAGGAACATGATCATCATCCAAATTTAGACAAAGCATATGACAGTTGTGCATTACAAGAATGTCATTATTCGGTTCAAGGAGATATAACTGACATATCAAAAACTGGAATCCAGGAAACTTCTCATTGTGATAGCACCAATCAAACATGCCAAACTGTAATTTCAG : GCTCAATGATCTTTGGAGATAATAAGAGCCTGGACTCTGTAGACATCCATGAGTGTCATTCACATGCTCATCCACCCCACAAGGAGGAACCACATCATTCTGTTGGACATGGCTGTTCGGACAAGGAACACGATCATTCACATCCAGAGAAAGCATTTGACAGTTGTGCAACACAAGAATGTTGTTTTTCAGTTCAGGACCACAGCATTGACATATCCGAAAATGGAAGTCAAGGAACTGATCATTGTGACAGCATTAAACAAAGCATGGTCATCCCATGTAGCTGCAAACATACACCACAAGAGAAGGTAAGTCACTGTGGATTTCACTCTACAACTATCCCTACTGATGAAGAACTAGCGAAGCTGGTTAGAAGATGTTGCGATTACAGACCATGCCACAACGTCCGTTCTGGCTGCAGAAATCATGCTACAGAATGTGGTCCAACCACCCGATCAACCATCAATATCTTACGGGACAACCATCATCATCATCATCTAGACTGCAGTGGTCGTAAGGTTTGTTCGCCAATTGAGAAGAGACACATTGGTGGATGCTGTGAGAGCTTCAGAAAAGAATGTTGCCCCAAGAACATTAATCATTTTGCATCAAGTTTTGGAGGAGGTTTATCAGAAATTGTATTAGAGTAAGATGCAATCTTAAAAGTGTAAATATGTTGCAACTTTTCTACCTATTTTATCTTCAAGAAGCTGAGATGCTATTTTGTATGAACTTAGCTATTACCATGGCTTGTATACTAATCCTAAAAATGGTTTGTGTATTTGTTGAATTCTAACAAAGTTGGGAACTTCAATGTCATTTGCATGAAAAAATCAGCTCA</gDNA_template>
            <first_frame> V  M  R  K  S  Q  V  P  R  L  C  N  R  A  R  C  S  F  T  Y  *  S  T  L  R  G  S  D  S  E  A  E  N  L  G  F  G  I  K  S  *  S  *  S  W  L  L  *  R  G  T  *  S  S  S  K  F  R  Q  S  I  *  Q  L  C  I  T  R  M  S  L  F  G  S  R  R  Y  N  *  H  I  K  N  W  N  P  G  N  F  S  L  *  *  H  Q  S  N  M  P  N  C  N  F  R :   L  N  D  L  W  R  *  *  E  P  G  L  C  R  H  P  *  V  S  F  T  C  S  S  T  P  Q  G  G  T  T  S  F  C  W  T  W  L  F  G  Q  G  T  R  S  F  T  S  R  E  S  I  *  Q  L  C  N  T  R  M  L  F  F  S  S  G  P  Q  H  *  H  I  R  K  W  K  S  R  N  *  S  L  *  Q  H  *  T  K  H  G  H  P  M  *  L  Q  T  Y  T  T  R  E  G  K  S  L  W  I  S  L  Y  N  Y  P  Y  *  *  R  T  S  E  A  G  *  K  M  L  R  L  Q  T  M  P  Q  R  P  F  W  L  Q  K  S  C  Y  R  M  W  S  N  H  P  I  N  H  Q  Y  L  T  G  Q  P  S  S  S  S  S  R  L  Q  W  S  *  G  L  F  A  N  *  E  E  T  H  W  W  M  L  *  E  L  Q  K  R  M  L  P  Q  E  H  *  S  F  C  I  K  F  W  R  R  F  I  R  N  C  I  R  V  R  C  N  L  K  S  V  N  M  L  Q  L  F  Y  L  F  Y  L  Q  E  A  E  M  L  F  C  M  N  L  A  I  T  M  A  C  I  L  I  L  K  M  V  C  V  F  V  E  F  *  Q  S  W  E  L  Q  C  H  L  H  E  K  I  S  S </first_frame>
            <second_frame>  S  C  G  N  H  K  C  Q  D  S  A  T  E  H  G  V  H  S  L  T  D  P  L  S  E  E  V  I  L  K  Q  K  I  L  V  L  E  S  N  H  D  L  S  H  G  C  C  E  E  E  H  D  H  H  P  N  L  D  K  A  Y  D  S  C  A  L  Q  E  C  H  Y  S  V  Q  G  D  I  T  D  I  S  K  T  G  I  Q  E  T  S  H  C  D  S  T  N  Q  T  C  Q  T  V  I  S   : G  S  M  I  F  G  D  N  K  S  L  D  S  V  D  I  H  E  C  H  S  H  A  H  P  P  H  K  E  E  P  H  H  S  V  G  H  G  C  S  D  K  E  H  D  H  S  H  P  E  K  A  F  D  S  C  A  T  Q  E  C  C  F  S  V  Q  D  H  S  I  D  I  S  E  N  G  S  Q  G  T  D  H  C  D  S  I  K  Q  S  M  V  I  P  C  S  C  K  H  T  P  Q  E  K  V  S  H  C  G  F  H  S  T  T  I  P  T  D  E  E  L  A  K  L  V  R  R  C  C  D  Y  R  P  C  H  N  V  R  S  G  C  R  N  H  A  T  E  C  G  P  T  T  R  S  T  I  N  I  L  R  D  N  H  H  H  H  H  L  D  C  S  G  R  K  V  C  S  P  I  E  K  R  H  I  G  G  C  C  E  S  F  R  K  E  C  C  P  K  N  I  N  H  F  A  S  S  F  G  G  G  L  S  E  I  V  L  E  *  D  A  I  L  K  V  *  I  C  C  N  F  S  T  Y  F  I  F  K  K  L  R  C  Y  F  V  *  T  *  L  L  P  W  L  V  Y  *  S  *  K  W  F  V  Y  L  L  N  S  N  K  V  G  N  F  N  V  I  C  M  K  K  S  A   </second_frame>
            <third_frame>   H  A  E  I  T  S  A  K  T  L  Q  P  S  T  V  F  I  H  L  L  I  H  S  P  R  K  *  F  *  S  R  K  S  W  F  W  N  Q  I  M  I  L  V  M  A  A  V  K  R  N  M  I  I  I  Q  I  *  T  K  H  M  T  V  V  H  Y  K  N  V  I  I  R  F  K  E  I  *  L  T  Y  Q  K  L  E  S  R  K  L  L  I  V  I  A  P  I  K  H  A  K  L  *  F  Q  :  A  Q  *  S  L  E  I  I  R  A  W  T  L  *  T  S  M  S  V  I  H  M  L  I  H  P  T  R  R  N  H  I  I  L  L  D  M  A  V  R  T  R  N  T  I  I  H  I  Q  R  K  H  L  T  V  V  Q  H  K  N  V  V  F  Q  F  R  T  T  A  L  T  Y  P  K  M  E  V  K  E  L  I  I  V  T  A  L  N  K  A  W  S  S  H  V  A  A  N  I  H  H  K  R  R  *  V  T  V  D  F  T  L  Q  L  S  L  L  M  K  N  *  R  S  W  L  E  D  V  A  I  T  D  H  A  T  T  S  V  L  A  A  E  I  M  L  Q  N  V  V  Q  P  P  D  Q  P  S  I  S  Y  G  T  T  I  I  I  I  I  *  T  A  V  V  V  R  F  V  R  Q  L  R  R  D  T  L  V  D  A  V  R  A  S  E  K  N  V  A  P  R  T  L  I  I  L  H  Q  V  L  E  E  V  Y  Q  K  L  Y  *  S  K  M  Q  S  *  K  C  K  Y  V  A  T  F  L  P  I  L  S  S  R  S  *  D  A  I  L  Y  E  L  S  Y  Y  H  G  L  Y  T  N  P  K  N  G  L  C  I  C  *  I  L  T  K  L  G  T  S  M  S  F  A  *  K  N  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108034" stop="107725"/>
                    <exon start="107635" stop="106986"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>957</number_coding_nucleotides>
                  <number_encoded_amino_acids>319</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCGNHKCQDSATEHGVHSLTDPLSEEVILKQKILVLESNHDLSHGCCEEEHDHHPNLDKAYDSCALQECHYSVQGDITDISKTGIQETSHCDSTNQTCQTVISGSMIFGDNKSLDSVDIHECHSHAHPPHKEEPHHSVGHGCSDKEHDHSHPEKAFDSCATQECCFSVQDHSIDISENGSQGTDHCDSIKQSMVIPCSCKHTPQEKVSHCGFHSTTIPTDEELAKLVRRCCDYRPCHNVRSGCRNHATECGPTTRSTINILRDNHHHHHLDCSGRKVCSPIEKRHIGGCCESFRKECCPKNINHFASSFGGGLSEIVLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="106818" PGL_stop="107446"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106818" e_stop="107446"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="106818" e_stop="107446" e_length="629"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106818" stop="107446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435510" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACATTGAAGTTCCCAACTTTGTTAGAATTCAACAAATACACAAACCATTTTTAGGATTAGTATACAAGCCATGGTAATAGCTAAGTTCATACAAAATAGCATCTCAGCTTCTTGAAGATAAAATAGGTAGAAAAGTTGCAACATATTTACACTTTTAAGATTGCATCTTACTCTAATACAATTTCTGATAAACCTCCTCCAAAACTTGATGCAAAATGATTAATGTTCTTGGGGCAACATTCTTTTCTGAAGCTCTCACAGCATCCACCAATGTGTCTCTTCTCAATTGGCGAACAAACCTTACGACCACTGCAGTCTAGATGATGATGATGATGGTTGTCCCGTAAGATATTGATGGTTGATCGGGTGGTTGGACCACATTCTGTAGCATGATTTCTGCAGCCAGAACGGACGTTGTGGCATGGTCTGTAATCGCAACATCTTCTAACCAGCTTCGCTAGTTCTTCATCAGTAGGGATAGTTGTAGAGTGAAATCCACAGTGACTTACCTTCTCTTGTGGTGTATGTTTGCAGCTACATGGGATGACCATGCTTTGTTTAATGCTGTCACAATGATCAGTTCCTTGACTTCCATTTTCGGATATGTCAATGCTGTGGTCCTGAACTG</gDNA_template>
            <first_frame> D  I  E  V  P  N  F  V  R  I  Q  Q  I  H  K  P  F  L  G  L  V  Y  K  P  W  *  *  L  S  S  Y  K  I  A  S  Q  L  L  E  D  K  I  G  R  K  V  A  T  Y  L  H  F  *  D  C  I  L  L  *  Y  N  F  *  *  T  S  S  K  T  *  C  K  M  I  N  V  L  G  A  T  F  F  S  E  A  L  T  A  S  T  N  V  S  L  L  N  W  R  T  N  L  T  T  T  A  V  *  M  M  M  M  M  V  V  P  *  D  I  D  G  *  S  G  G  W  T  T  F  C  S  M  I  S  A  A  R  T  D  V  V  A  W  S  V  I  A  T  S  S  N  Q  L  R  *  F  F  I  S  R  D  S  C  R  V  K  S  T  V  T  Y  L  L  L  W  C  M  F  A  A  T  W  D  D  H  A  L  F  N  A  V  T  M  I  S  S  L  T  S  I  F  G  Y  V  N  A  V  V  L  N   </first_frame>
            <second_frame>  T  L  K  F  P  T  L  L  E  F  N  K  Y  T  N  H  F  *  D  *  Y  T  S  H  G  N  S  *  V  H  T  K  *  H  L  S  F  L  K  I  K  *  V  E  K  L  Q  H  I  Y  T  F  K  I  A  S  Y  S  N  T  I  S  D  K  P  P  P  K  L  D  A  K  *  L  M  F  L  G  Q  H  S  F  L  K  L  S  Q  H  P  P  M  C  L  F  S  I  G  E  Q  T  L  R  P  L  Q  S  R  *  *  *  *  W  L  S  R  K  I  L  M  V  D  R  V  V  G  P  H  S  V  A  *  F  L  Q  P  E  R  T  L  W  H  G  L  *  S  Q  H  L  L  T  S  F  A  S  S  S  S  V  G  I  V  V  E  *  N  P  Q  *  L  T  F  S  C  G  V  C  L  Q  L  H  G  M  T  M  L  C  L  M  L  S  Q  *  S  V  P  *  L  P  F  S  D  M  S  M  L  W  S  *  T  </second_frame>
            <third_frame>   H  *  S  S  Q  L  C  *  N  S  T  N  T  Q  T  I  F  R  I  S  I  Q  A  M  V  I  A  K  F  I  Q  N  S  I  S  A  S  *  R  *  N  R  *  K  S  C  N  I  F  T  L  L  R  L  H  L  T  L  I  Q  F  L  I  N  L  L  Q  N  L  M  Q  N  D  *  C  S  W  G  N  I  L  F  *  S  S  H  S  I  H  Q  C  V  S  S  Q  L  A  N  K  P  Y  D  H  C  S  L  D  D  D  D  D  G  C  P  V  R  Y  *  W  L  I  G  W  L  D  H  I  L  *  H  D  F  C  S  Q  N  G  R  C  G  M  V  C  N  R  N  I  F  *  P  A  S  L  V  L  H  Q  *  G  *  L  *  S  E  I  H  S  D  L  P  S  L  V  V  Y  V  C  S  Y  M  G  *  P  C  F  V  *  C  C  H  N  D  Q  F  L  D  F  H  F  R  I  C  Q  C  C  G  P  E  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0030C22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 192 chains have been computed
$ 
$ memory statistics:
$ 227544 bytes spliced alignments in total
$ 101 spliced alignments have been stored
$ 2252 bytes was the average size of a spliced alignment
$ 19088 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1908 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 233 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-09 02:41:47
-->
