<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-23 14:15:06"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0030C22-Q7p0M/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0030C22-Q7p0M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0030C22-Q7p0M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M9089" ref_strand="+" ref_description="SGN-M9089 C2_At5g55940 [cosii_markers]">
      <seq>aaaattctccaagtacactagagagcatcggagtagtcaaagacgcagaaacagattcgatcggccggccgccggaataaggattctcagagtgattgtttgaagagatgggtggcgaatcgaattacgagattcatcaaaacgcctacatcaagttaatccttcatgcccttaagcacaagacttcctccgtcaatggtgttcttcttggtagaatatccggcaacggcgacaacgtcgaaattgtcgaatctgttccgttgttccactctcagattggtttacttccaccactcgaaatttcacttatcatgattgaggagtactatgctgataaaggtttgagtattgtgggttattttcacgcaaatgaaagatccgatgattttgaggtcggaaatgtggccaagaatattggtgatcatatctacaaatatttccctcaagctgctttacttctgatggataacaagaagcttgaagctttactgaaggagggcaaagacaggagtcctgttatgcagctttacactaaggaatcatctaggagctggaaactagcgggagctgatgcaagcggctctctgaaaatcaaagaaccatctgcaaatattgttcttctagactatgtctcatcagggaaatggaaggacatcgtggatttcgatgaccatctggatgacattagcaaggactggctgaatccagaactcttcaagtgagatgtctacagagaggatgacacaattatcctgttgttaccgcgtgtgatatttggtgtttatccctcccgcgtagttgctgagtttatgaagaaacaatctaatgactctgaatttgcagactgttgaagattaccaattacctaatggcttttgaatattgttagaagatagggttcatatcattgcataattacgcgtttctaataggtcaaacatgaattttttgagcaacacaactcaattttgtactgaatggggaaccatgagtttttatttttaaactaaattattttgcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-Q7p0M/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21458" stop="14767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21158" g_stop="20845" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20514" g_stop="20368" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="461" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20264" g_stop="20202" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="524" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20201" i_stop="15668" i_length="4534">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15667" g_stop="15501" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="691" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15500" i_stop="15397" i_length="104">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15396" g_stop="15068" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="1020" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1021" polyA_stop="1036"/>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-M9089" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1020</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M9089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21158" e_stop="20845"/>
          <exon e_start="20514" e_stop="20368"/>
          <exon e_start="20264" e_stop="20202"/>
          <exon e_start="15667" e_stop="15501"/>
          <exon e_start="15396" e_stop="15068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCTCCAAGTACACTAGAGAGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATGGTCAGTTCCCCTCCCTTTGAATTAAAGTGGATTTTAGTAGCGCAATTGAAGTATACTAATTGTTTTGATAATGAAATTGAGCATTAGGTTTGTATTTTGTAGTAACTGAAGTACACTTATAATGAAATTGAAGTACACTAATTGCTCGGGCTGGGCTCAGCTTGATGCCCAGGCCTAATTACAGGTTAATACTTGTAGATGTGGGTTCGTATCCACTATATCTGTAGGATAATAGATTTGAACTGAGTATAAAGGGATGTTTTGGAGAATTTTCAACTAAATATGTACCATGCCTTCTAACTTGTTTGGAAGTCTCTTTTATTTGGATAGATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTGGTACCCTTTTTTCTTACTCAACATAGTTCTAATTCAAAATGTTCCAATCTTTAAATTGTAAGTTAACAAAGTGCTTGAGCTTAATTTGCCTTGTATTTTACAGATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAGGTATGCACATATCATTTTAATGAGCTATTGGCTTTTGAACTAAATTCAGTCTTTTTATTCTTCTTCATATTTTTATCCGGTCTAGTTAATTATTGATGCCAAATTCCAGTAATTATGCCATTCAAATTTGAACTTTTGGTGCATTAAGCATTAGTGACTACGTGACCAACTTCATATATATAGTTTATTCTTCCTTGATAATCATTCTAGCTGTCTTATGGTTTCTCTTCTCTATCTGTCCCATTTTTCACGTGGTGATGAAGTTAGTTGGAATAATGTGGTTACTTTAGTTCTTTTGTTTCTATTTAATGCGGAAGGTTATTAGTTCTTTCCATTTACTAGAGAACTTCGTGTTGTTATTTGACGACATAGAACTCTGTCCTTTTGTTTTGATAATTATGGGAGTCCAGGAAATCAAGTTCACATCTAAGTCTGTATGTCCACAATAATCTTAATGTTCTATTTCTGCTGGGTGAACAAATGAAAATCCTTGTTTTATATTCTATCTGCGTTGTTTCTAATTAATCCAGTTGGCACGAAGGAAAAGCAGTTGATAATCCTACTTCTCTGTGCAAAGGGTAATGAACTACTATGCAATGGCTAATGGGTATGACTTGAGGATTGTAAAAACTGATCCCACTAGGACTTGGTATATTTGTGAACTTGGAATGTCCTTTTAGATGTCCTATCTCACAGGATAAAATGAGTGTTGGGTTGAGTAACAAAACTTTGAAATCAGAACATAATTGTGATCCTTGTTACAAAAACCCAAGAGAACTCATTAGCACAATACTTGAAGAAAGAATAACTCCCTCTGTCCCAATTTAAGTGTCTTAGTTTAATTGTCCACAAAGTTTATGAAATAAAGAAATGTTTGAATCTTGTTGTCTTGAATTAAAGATGTGTGTAGTCCTTTAAATCTTGTGTTCTTAAATTTGCCTAGAAGAATGTTGGAACTGAAAAATATACTAAAGATAGAAAGAGACACTCTTTTTGGGACAGTCCAAAAATGAAAGACACTTAAAAAATCAGGATGGAGGGAGTACAAAACAATTCCAAGTACACTGTTAAGGAGCTTCAAGGATAATTATTATAATCTTGAAATATATTTAAAGGGCCATCCAAGTCATAAATATCGATTTTTTTCCGTCCTCAAGCCATACTTATTAGCCATTGCATAGTAGTTCATTATCCTTCTACCTTCCACAATATCAGAAAATGTCATATCCTTCTTCAACTCCCTTATAATTGTCCAGCCTACTAATAACCTCGATTTCTTCATCATACTCCAAATTGGCAAATCAAAAAATTATAGTCCTCAATAACATGATCATTATCAGATGCTACCTCAACGTCTACATGATATGTTTCGATATGATGCAAAATTATATGTTTATGGATGATCAAATTTGTCTCATCTGCAGCAAACAAGTGTATAACTCCCAACTCATGGCGAATAAGGTTCTGCAAAGCCCTAAAATACCATCATCTCCATCAATAATATAGTCCCTACTCGGGTCTGGCAACTAACAATTGTTTGACCTTAATAAACCTTAGCTCTTTCTTGAACTCTTCCACAAAAATCTTTATAAGAAAGCAGGTTTTTGGTCAAACCTATGACAGAAGTGCGCCAGTTTCTTACTATTGAATAAGTGAGGAGAAAAGACTCATTCACCCCATAGTGGAAACACACTTTCTCTTTGTCAATCATGCTTCGGTAAAGATCACATGCCAAGGAAAAAATGAGGGACCACATCAGCAACATACATAGGCTATACAAAATCTGTGAATATAAAAACTCTAGAATGACACAACACATTTTGGGACCATAAAAGAAAGGAACAGAACCATAAAAACACTGAAACTTTACATATTAAGCTATGATTTACATACTCAAAAATAAGAAACTCCACATTAACAGATTCTCTACCCACCACCTTAAATAATTATTTAAATAGAGAACCAGCCTTTATGAGCTATTCCTTTTGTCCTTCTCCCTCATAAACAAGCTATGAAGTCAACTTTGGCCATAGTTTTTTTCCCGATCAATTACCAAAAGAACTGAGTTAAGGCTTAAGGATTTGGGTCTGGTCGAGTAAGGGAATTGAGGAGAATGGATTATGGGTTTGGGCAAAAAGAGTCTGGGTCGGGTTCTAATATGGAGCGGTTAAAGCTAATTGGCATGGGTATTAAATAAGTGGGACATGTTAGTGATGTGACCTGTTTAATTTGATGTTATTGTCCAATTCAGTATTTTTAAACCAAAAATTGGTATTCAAACTGGCTATTTGAGCTGTTAGTGGTATGTGGCATGAATGTGCAAATTGTGTCATGGCAATGACAAAAATATGCACAACTAGTAATGAGTGGCACAGCAGAGCCATTTCTGATAGTTCAATGGTATATTTTTTCTTTTCTTCTTTTATTAAAAGACATGGGCAATCTCGTCATTTAGGTGGATTTAGTGGTCATGCTAATATGCGGAGTGGTAACCAAGGTAGGTCTCGTAAATCCTATTGGGCCTCAGTTTTGATTAAGAAATCAAATGCTGGGATTGCAAGCAAGTAGGTCACAAGAAAGCTGCTTGTCCCTGAACAAGAAACCAGGTGACCATTTTTATGAACCGAACCATAGCACTACCATCAAGGGCTTAACATGATTGGCCCGATGGTATCAAATCCCTATTTATGGATGTATTCTACACAAATCATTTTTCCATATAGGACACTAAATGCGTTACATTCTTGAATAGTTGAAACTCTTTCTTAGGACTGTTGTTAAGGTCTCGAAGGCAATTTCATTTGATAAAAAATTGGATATTCTTTTTGTATTTCCATCGAAGATGGGTTCATTTCTATAATACCATTGTTGAGGAGAACAACTTGTTCTTGAAATCATCATGGCTAAAAGATGAACATAATAATGGGTTCGAGAAAGAAGGAAAGTTGAGAACCCATCTGAGGTGGAAAAATTGTGGGCAAGTAAAATGAATAAAGTGAACTCATTTAGTTCAATGATGGGTTTGATGACTTTGTCCCAATTTTTTTTAATCTTGTTTGTTGGACTATATTCCCGTTGTGTTTATGAAATGGGTTTGTCATCCAATGTTACTTGGTCGAGTCTAAAGGAATTACAAGCATATAATGGTAGTCGATGTGAAGGAAAATACTGTAATTGACCTAAGCCAGTCAAAACATTTCCTACAAAAATTTTGATTGATGAGTTAGCTTTTGTTTAAATAACTCAGTTGTGTTTCTGATAATTGCTTTTGAGTATTGGTGTTAAAAAGGGGAAAAGAAAAAAGAATGAGATGTGGCAATCATTGAAGATGTGAAGGCGACCATAGCAGGTCGGAGAGGATGAGAAACAAAAGGAATTAATATGAGTTATATCAACCAAAAATTATGTTTTCATGCACTTAAAATTTAGGTGCATGACACCTATCATGTTGGTGATAGGCGTGCACGAGATATAATTTTGTCAAGTGAAAGTGTTCAAATAATCATTATGAAAGTTAGTGGTGGTGTCTATCTGAAAATTGATGCCATGTTTGAGGTATCTCTAGATTTGCCCATGATATTTGTTGTTGGCTAATATAAAAAGAATTAGAAATCCCATTCCAACATCTTCAGGGGGGAAAACAATATCAGCATCCAAGTTTGAATTCGAAATGGACCTTATTTTCTCTGTTTTAATATGGGATGAAGATGAATCACCATGCTTACCTTGCAACAGAGGAGAAAGTTGCTCTAACTCAATCAGATGAAATCAAGTTATCAGTTGCTTTCATCTTCATGTGAAAAACGGAGAACTATCTGTTATGAGTACTTGGCTTCTTATGAAAAGAGTTCCAATAGACAGCTGGCCTGAGAATTTTGAACTTCAGATTCTTCTTGGGGTAGTTTTGGAATTCCTTATTAATAAAGCCTTGCTGGATAGTTATATTGTTTGCATAATCTAAATCAGGTTCTCTTTACCCCTTTACCAATATTTCCATCAGTTCATTTTTTCCTTTTTTTTTTTTGGTAATCATGGTGTTTGCTTCAGTTTGTGCACACGTTGACTAATTCACGGGGCACATACTATCTTTCACCAGCACAAGTATCAGGACCAAGGCTTGGATAGATGGGAAGAAAGCGCCTAGGACTTTTATGTCCACTGTCATTTCGACCACATCATTGACCATTAGGCCCACACCCTTGCATACATATTACCGGTAGTGCTATATGTGGTTATTTTGAAATCCGTTGGATAACAATTTGTGATACTTAAATTGTCAATGTCGCTAATCTCTGTATTAGTTTGGTTCTCCTTTTATAATTTTGTTACATATTGCACTACAAGCTGATTCAGAGGTCCAGGTTCTGCTTGACTTTAAAGCTTGTTCTTGGCAATTATTTGTGTTTTCGTAATTTAGTCTTGTACAAAAATAGTTGTCTTGCTGGTATATGACTCTGATTTTATAGTTGTGTTCTTTAACAAGTTCATGTCAATATAGCAGTTTCCTTTACTTCAGCTCTTTTTCTTTATTCAGCTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAAGTAATAGCTACATACAATTATCTGCTTTAGCTCTGCTTTACATCCACATTGTTTTCTATAATTTACTTATGATTTCTTCTTCTCTTGCTAATTCATTTTGGTAGGGACTGGCTGAATCCAGAACTCTTCAAGTGAGATGTCTACAGAGAGGATGACACAATTATCCTGTTGTTACCGCGTGTGATATTTGGTGTTTATCCCTCCCGCGTAGTTGCTGAGTTTATGAAGAAACAATCTAATGACTCTGAATTTGCAGACTGTTGAAGATTACCAATTACCTAATGGCTTTTGAATATTGTTAGAAGATAGGGTTCATATCATTGCATAATTACGCGTTTCTAATAGGTCAAACATGAATTTTTTGAGCAACACAACTCAATTTTGTACTGAATGGGGAACCATGAGTTTTTATTTTTAAACTAAATTATTTTGC</genome_strand>
        <mrna_strand>AAAATTCTCCAAGTACACTAGAGAGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG..........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG.......................................................................................................ATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAA........................................................................................................GGACTGGCTGAATCCAGAACTCTTCAAGTGAGATGTCTACAGAGAGGATGACACAATTATCCTGTTGTTACCGCGTGTGATATTTGGTGTTTATCCCTCCCGCGTAGTTGCTGAGTTTATGAAGAAACAATCTAATGACTCTGAATTTGCAGACTGTTGAAGATTACCAATTACCTAATGGCTTTTGAATATTGTTAGAAGATAGGGTTCATATCATTGCATAATTACGCGTTTCTAATAGGTCAAACATGAATTTTTTGAGCAACACAACTCAATTTTGTACTGAATGGGGAACCATGAGTTTTTATTTTTAAACTAAATTATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0030C22-Q7p0M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M9089-2" ref_strand="+" ref_description="SGN-M9089-2 C2_At5g55940-2 [cosii_markers]">
      <seq>ctcaagtacatcggagtagtcaaagacgcagtcagattggatcggccggcagccggaatagggattctcagagtgattgtttgaagagatgggtggcgaatcgaattacgagattcatcaaaatgcctacatcaagttaaaccttcatgcccttaagcacaagacttcctccgtcaacggtgttcttcttggccgaatctccggcaacggcgacaacgttgaaattgtcgaatccgttccgtttttccactctcagattggtttacttccaccactcgaaatttcacttatcatgattgaggagtactatgctgataaaggtttgagtattgtgggttattttcacgcaaatgaaagatctgatgattttgaggtcggaaatgtggccaagaatattggtgatcatatctacaaatatttccctcaagctgctttacttctgttggataacaagaagcttgaagctttactgaaggaaggcaaagacaggagtcctgttatgcagctttacactaaggaatcatctaggagctggaaactagcgggagctgatgcaagcggctctctgaaaatcaaagaaccatctgcaaatattgttcttctagactatgtctcatctgggaaatggaaggacatcgtggattttgatgaccatctggatgacattagcaaggactggctgaatccagaactcttcaagtgaaatgtctacggaggatgacacaattatcatgttgttaccgcgtgtggtatttggtgtttatccctcccgcgcagttgctgagtttatttatggagaaaagaaatctatggctctgaatttgcagacctatgaagattatcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-Q7p0M/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21441" stop="14967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21141" g_stop="20845" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20514" g_stop="20368" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="442" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20264" g_stop="20202" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="505" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20201" i_stop="15668" i_length="4534">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15667" g_stop="15501" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="672" r_length="167" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15500" i_stop="15397" i_length="104">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15396" g_stop="15279" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="788" r_length="116" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-M9089-2" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M9089-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21141" e_stop="20845"/>
          <exon e_start="20514" e_stop="20368"/>
          <exon e_start="20264" e_stop="20202"/>
          <exon e_start="15667" e_stop="15501"/>
          <exon e_start="15396" e_stop="15279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAGAGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATGGTCAGTTCCCCTCCCTTTGAATTAAAGTGGATTTTAGTAGCGCAATTGAAGTATACTAATTGTTTTGATAATGAAATTGAGCATTAGGTTTGTATTTTGTAGTAACTGAAGTACACTTATAATGAAATTGAAGTACACTAATTGCTCGGGCTGGGCTCAGCTTGATGCCCAGGCCTAATTACAGGTTAATACTTGTAGATGTGGGTTCGTATCCACTATATCTGTAGGATAATAGATTTGAACTGAGTATAAAGGGATGTTTTGGAGAATTTTCAACTAAATATGTACCATGCCTTCTAACTTGTTTGGAAGTCTCTTTTATTTGGATAGATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTGGTACCCTTTTTTCTTACTCAACATAGTTCTAATTCAAAATGTTCCAATCTTTAAATTGTAAGTTAACAAAGTGCTTGAGCTTAATTTGCCTTGTATTTTACAGATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAGGTATGCACATATCATTTTAATGAGCTATTGGCTTTTGAACTAAATTCAGTCTTTTTATTCTTCTTCATATTTTTATCCGGTCTAGTTAATTATTGATGCCAAATTCCAGTAATTATGCCATTCAAATTTGAACTTTTGGTGCATTAAGCATTAGTGACTACGTGACCAACTTCATATATATAGTTTATTCTTCCTTGATAATCATTCTAGCTGTCTTATGGTTTCTCTTCTCTATCTGTCCCATTTTTCACGTGGTGATGAAGTTAGTTGGAATAATGTGGTTACTTTAGTTCTTTTGTTTCTATTTAATGCGGAAGGTTATTAGTTCTTTCCATTTACTAGAGAACTTCGTGTTGTTATTTGACGACATAGAACTCTGTCCTTTTGTTTTGATAATTATGGGAGTCCAGGAAATCAAGTTCACATCTAAGTCTGTATGTCCACAATAATCTTAATGTTCTATTTCTGCTGGGTGAACAAATGAAAATCCTTGTTTTATATTCTATCTGCGTTGTTTCTAATTAATCCAGTTGGCACGAAGGAAAAGCAGTTGATAATCCTACTTCTCTGTGCAAAGGGTAATGAACTACTATGCAATGGCTAATGGGTATGACTTGAGGATTGTAAAAACTGATCCCACTAGGACTTGGTATATTTGTGAACTTGGAATGTCCTTTTAGATGTCCTATCTCACAGGATAAAATGAGTGTTGGGTTGAGTAACAAAACTTTGAAATCAGAACATAATTGTGATCCTTGTTACAAAAACCCAAGAGAACTCATTAGCACAATACTTGAAGAAAGAATAACTCCCTCTGTCCCAATTTAAGTGTCTTAGTTTAATTGTCCACAAAGTTTATGAAATAAAGAAATGTTTGAATCTTGTTGTCTTGAATTAAAGATGTGTGTAGTCCTTTAAATCTTGTGTTCTTAAATTTGCCTAGAAGAATGTTGGAACTGAAAAATATACTAAAGATAGAAAGAGACACTCTTTTTGGGACAGTCCAAAAATGAAAGACACTTAAAAAATCAGGATGGAGGGAGTACAAAACAATTCCAAGTACACTGTTAAGGAGCTTCAAGGATAATTATTATAATCTTGAAATATATTTAAAGGGCCATCCAAGTCATAAATATCGATTTTTTTCCGTCCTCAAGCCATACTTATTAGCCATTGCATAGTAGTTCATTATCCTTCTACCTTCCACAATATCAGAAAATGTCATATCCTTCTTCAACTCCCTTATAATTGTCCAGCCTACTAATAACCTCGATTTCTTCATCATACTCCAAATTGGCAAATCAAAAAATTATAGTCCTCAATAACATGATCATTATCAGATGCTACCTCAACGTCTACATGATATGTTTCGATATGATGCAAAATTATATGTTTATGGATGATCAAATTTGTCTCATCTGCAGCAAACAAGTGTATAACTCCCAACTCATGGCGAATAAGGTTCTGCAAAGCCCTAAAATACCATCATCTCCATCAATAATATAGTCCCTACTCGGGTCTGGCAACTAACAATTGTTTGACCTTAATAAACCTTAGCTCTTTCTTGAACTCTTCCACAAAAATCTTTATAAGAAAGCAGGTTTTTGGTCAAACCTATGACAGAAGTGCGCCAGTTTCTTACTATTGAATAAGTGAGGAGAAAAGACTCATTCACCCCATAGTGGAAACACACTTTCTCTTTGTCAATCATGCTTCGGTAAAGATCACATGCCAAGGAAAAAATGAGGGACCACATCAGCAACATACATAGGCTATACAAAATCTGTGAATATAAAAACTCTAGAATGACACAACACATTTTGGGACCATAAAAGAAAGGAACAGAACCATAAAAACACTGAAACTTTACATATTAAGCTATGATTTACATACTCAAAAATAAGAAACTCCACATTAACAGATTCTCTACCCACCACCTTAAATAATTATTTAAATAGAGAACCAGCCTTTATGAGCTATTCCTTTTGTCCTTCTCCCTCATAAACAAGCTATGAAGTCAACTTTGGCCATAGTTTTTTTCCCGATCAATTACCAAAAGAACTGAGTTAAGGCTTAAGGATTTGGGTCTGGTCGAGTAAGGGAATTGAGGAGAATGGATTATGGGTTTGGGCAAAAAGAGTCTGGGTCGGGTTCTAATATGGAGCGGTTAAAGCTAATTGGCATGGGTATTAAATAAGTGGGACATGTTAGTGATGTGACCTGTTTAATTTGATGTTATTGTCCAATTCAGTATTTTTAAACCAAAAATTGGTATTCAAACTGGCTATTTGAGCTGTTAGTGGTATGTGGCATGAATGTGCAAATTGTGTCATGGCAATGACAAAAATATGCACAACTAGTAATGAGTGGCACAGCAGAGCCATTTCTGATAGTTCAATGGTATATTTTTTCTTTTCTTCTTTTATTAAAAGACATGGGCAATCTCGTCATTTAGGTGGATTTAGTGGTCATGCTAATATGCGGAGTGGTAACCAAGGTAGGTCTCGTAAATCCTATTGGGCCTCAGTTTTGATTAAGAAATCAAATGCTGGGATTGCAAGCAAGTAGGTCACAAGAAAGCTGCTTGTCCCTGAACAAGAAACCAGGTGACCATTTTTATGAACCGAACCATAGCACTACCATCAAGGGCTTAACATGATTGGCCCGATGGTATCAAATCCCTATTTATGGATGTATTCTACACAAATCATTTTTCCATATAGGACACTAAATGCGTTACATTCTTGAATAGTTGAAACTCTTTCTTAGGACTGTTGTTAAGGTCTCGAAGGCAATTTCATTTGATAAAAAATTGGATATTCTTTTTGTATTTCCATCGAAGATGGGTTCATTTCTATAATACCATTGTTGAGGAGAACAACTTGTTCTTGAAATCATCATGGCTAAAAGATGAACATAATAATGGGTTCGAGAAAGAAGGAAAGTTGAGAACCCATCTGAGGTGGAAAAATTGTGGGCAAGTAAAATGAATAAAGTGAACTCATTTAGTTCAATGATGGGTTTGATGACTTTGTCCCAATTTTTTTTAATCTTGTTTGTTGGACTATATTCCCGTTGTGTTTATGAAATGGGTTTGTCATCCAATGTTACTTGGTCGAGTCTAAAGGAATTACAAGCATATAATGGTAGTCGATGTGAAGGAAAATACTGTAATTGACCTAAGCCAGTCAAAACATTTCCTACAAAAATTTTGATTGATGAGTTAGCTTTTGTTTAAATAACTCAGTTGTGTTTCTGATAATTGCTTTTGAGTATTGGTGTTAAAAAGGGGAAAAGAAAAAAGAATGAGATGTGGCAATCATTGAAGATGTGAAGGCGACCATAGCAGGTCGGAGAGGATGAGAAACAAAAGGAATTAATATGAGTTATATCAACCAAAAATTATGTTTTCATGCACTTAAAATTTAGGTGCATGACACCTATCATGTTGGTGATAGGCGTGCACGAGATATAATTTTGTCAAGTGAAAGTGTTCAAATAATCATTATGAAAGTTAGTGGTGGTGTCTATCTGAAAATTGATGCCATGTTTGAGGTATCTCTAGATTTGCCCATGATATTTGTTGTTGGCTAATATAAAAAGAATTAGAAATCCCATTCCAACATCTTCAGGGGGGAAAACAATATCAGCATCCAAGTTTGAATTCGAAATGGACCTTATTTTCTCTGTTTTAATATGGGATGAAGATGAATCACCATGCTTACCTTGCAACAGAGGAGAAAGTTGCTCTAACTCAATCAGATGAAATCAAGTTATCAGTTGCTTTCATCTTCATGTGAAAAACGGAGAACTATCTGTTATGAGTACTTGGCTTCTTATGAAAAGAGTTCCAATAGACAGCTGGCCTGAGAATTTTGAACTTCAGATTCTTCTTGGGGTAGTTTTGGAATTCCTTATTAATAAAGCCTTGCTGGATAGTTATATTGTTTGCATAATCTAAATCAGGTTCTCTTTACCCCTTTACCAATATTTCCATCAGTTCATTTTTTCCTTTTTTTTTTTTGGTAATCATGGTGTTTGCTTCAGTTTGTGCACACGTTGACTAATTCACGGGGCACATACTATCTTTCACCAGCACAAGTATCAGGACCAAGGCTTGGATAGATGGGAAGAAAGCGCCTAGGACTTTTATGTCCACTGTCATTTCGACCACATCATTGACCATTAGGCCCACACCCTTGCATACATATTACCGGTAGTGCTATATGTGGTTATTTTGAAATCCGTTGGATAACAATTTGTGATACTTAAATTGTCAATGTCGCTAATCTCTGTATTAGTTTGGTTCTCCTTTTATAATTTTGTTACATATTGCACTACAAGCTGATTCAGAGGTCCAGGTTCTGCTTGACTTTAAAGCTTGTTCTTGGCAATTATTTGTGTTTTCGTAATTTAGTCTTGTACAAAAATAGTTGTCTTGCTGGTATATGACTCTGATTTTATAGTTGTGTTCTTTAACAAGTTCATGTCAATATAGCAGTTTCCTTTACTTCAGCTCTTTTTCTTTATTCAGCTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAAGTAATAGCTACATACAATTATCTGCTTTAGCTCTGCTTTACATCCACATTGTTTTCTATAATTTACTTATGATTTCTTCTTCTCTTGCTAATTCATTTTGGTAGGGACTGGCTGAATCCAGAACTCTTCAAGTGAGATGTCTACAGAGAGGATGACACAATTATCCTGTTGTTACCGCGTGTGATATTTGGTGTTTATCCCTCCCGCGTAGTTGCTGAGTTT</genome_strand>
        <mrna_strand>CTCAAGTACATCGGAGTAGTCAAAGACGCAG--TCAGATTGGATCGGCCGGCAGCCGGAATAGGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAATGCCTACATCAAGTTAAACCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAACGGTGTTCTTCTTGGCCGAATCTCCGGCAACGGCGACAACGTTGAAATTGTCGAATCCGTTCCGTTTTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG..........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCTGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG.......................................................................................................TTGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAAGGCAAAGACAGGAGTCCTGTTATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCTGGGAAATGGAAGGACATCGTGGATTTTGATGACCATCTGGATGACATTAGCAA........................................................................................................GGACTGGCTGAATCCAGAACTCTTCAAGTGAAATGTCTAC-G-GAGGATGACACAATTATCATGTTGTTACCGCGTGTGGTATTTGGTGTTTATCCCTCCCGCGCAGTTGCTGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0030C22-Q7p0M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8357" ref_strand="+" ref_description="SGN-M8357 C2_At4g24820 [cosii_markers]">
      <seq>gaatctgaaactgagactcagtgaaatcccagaaaacatcaaaggagaaaatagctatggattctgaagaaggaacacaacaaccccagctagttctggcacacaaactattccgtttaacacatgcagatgtcaatgacttaaacaaagttcgtctccgtgaagaagtattggaagctgtactctccaatgatatggtaccgttgtatgaaaccctagttactaatggggttttgagtttggatcagaaggttctagattctatgcgtgctaaaaattgtgatgagctcaaaaaactcgatgacaagattgctgatgcagaagaaaacttaggtgaaagtgaagttcgggaagctcatttggcaaaatcattgttctacgttcggattggtgacaaggagaaagcacttgaacaactcaaggtgactgagagcaaaactgttgcagttgggcaaaagatggacttggtgttctacaccttgcagatgggattatttgacttggattttgacctcatctctaaaagcatcgacaaggcaaagaaattatttgaagtggggggtgactgggagagaaagaacaggttgaaggtgtatgaagggctgttctgcatgtccactcgtaacttcaagaaagcagcagatcttttcctagattctatatcaacttttaccacatatgagctttttccttatgatactttcatattttatacggtgcttacgagcatcattaccttggatcgggtttccttgaaacagaaggtagtggatgcaccagagatcttgacagtaattggaaagattccatatctgtccgagtttatgaactcattatatgagtgtcagtacaagtcatttttctcctcatttgctggcttgacggagcatattaaattggatcgctacttgcaaccacacttcagatattatatgagggaggtcagaacagttgtgtactcccagttcctggagtcctacaagagtgttactattggggccatggccaaggtttttggggtgtctgaggatttcatcgacttggaactatctcggttcattccagctgggaagttgcattgcaagattgataaagtagcaggagtattggaaactaatcgtcctgatgcaaggaatgctctttatcaggcaacgatcaagcaaggggacttcttgttgaaccgcattcaaaagctttctcgtgtcattgatctctgaagccgttaaaccattcaactctgaaaatctttggtggcatgtacttttaccttttcattttgagctctaggagtaccatttagtaattttttgaaatcaagagattttctgtgcctggattgaagtgtttcaaagcagccatgcaccttaaaagagccctcccaagtatcataaatcttttcgagtgcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-Q7p0M/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68249" stop="61839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67942" g_stop="67803" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="192" r_length="140" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="0.86"/>
            <acceptor a_prob="0.989" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="307" r_length="115" r_score="0.835"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="0.890" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="398" r_length="91" r_score="0.912"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64148" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="544" r_length="146" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64045" g_stop="63826" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="764" r_length="220" r_score="0.945"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63825" i_stop="63682" i_length="144">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63681" g_stop="63573" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="873" r_length="109" r_score="0.927"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63572" i_stop="62587" i_length="986">
            <donor d_prob="0.874" d_score="0.90"/>
            <acceptor a_prob="0.970" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62586" g_stop="62418" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="1042" r_length="169" r_score="0.970"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62417" i_stop="62330" i_length="88">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62329" g_stop="62009" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1043" r_stop="1338" r_length="296" r_score="0.841"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1406" polyA_stop="1423"/>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-M8357" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>1311</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67942" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64148"/>
          <exon e_start="64045" e_stop="63826"/>
          <exon e_start="63681" e_stop="63573"/>
          <exon e_start="62586" e_stop="62418"/>
          <exon e_start="62329" e_stop="62009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAAAAGGTAGTCAATATGTACTCCCTCTAATATCCTTGTTTGCTGTATGAGGAATTTTCTAACTTCAAAATTTGTGTTCCCTTGGAATATCTGGGATGTTACTGTGATGAATGTACTTGCAAATTCATTTTTATCACGTATATGTTGCAGGTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTGGTAAGCTTTTCCATTGATAATTTTTTCTTTTCGTATGTGAAGTGTGTCTTCGTAGTTTGCAAAGGTCTGCACACAAAAGTGTATGTAGATTATGTCTGATGGGGGTCCCTGATGCATTTTCTTGAGAATTTGATTGAGAATAGTGGTATTTGGCTATTTGCAAGGGCTTGATTACTGATAATCCAGTTTGGAGGTTTTGATTCTCAGATGACAGTGTTTCCTTTTTGGAGTAACTTGATAGTGAAATAGGTTACCACTGTTGTATAGAAACGTACCCCCTTTTCTTGTCTGAAAGTCTTTTGAATATCAGCACGAATGTATGGGGTCTTAGTGCTCTTTATTAGTCATGCAAGTAGTTTGCTTGATTGGACTAAAGGGATGTTCTTTCTGGCACATATTAAAACAGTAAAAAAGATGCTATTTCCGCTCCTGAAACTTGAAACTTTTCGAATGGATAATAGTTCTTTTCCAATTGCATAGAAAGTAATATCTCGTCATCTTTGTTAAGTTTGACAGGGAGTTTGTTTGGGTTAGGAGTTGGGGTAGGTGGGTGGACTTGTAATTCTCATTGCAGTTAGTCTTAGCTTGCATAGTCTGCTCACTTCTCTTTGTAATAATAGCTAATAAATCTTACATTGAGTTCTCTTCAGAGAACTAACTCAAATTTGTAGGGCAGTTACATTCACTTGAATTTCCCAACTGATTATTGGAGATGGGGGCAATGAGAGACCAATTGACCTTTGCGCACACACAAAAAAGATTGATACCTTTATAAAAAAAATTGACAAACCTAAATGTGTGTTTATAGACAGGCGTTAAAATGTGATCTGTAAGTATCGAGTTACAGGAGAGATAAACATGCTATATCTGTCATATACTCGTGATTTGTGATTTACCTATATGTTGATTGCTAGGGCCATGTATGTGGGCCATGAAATGATATATCAGTTGCAGAATGGTTGAATTTTACCTTAATGTGTTTTCAGCTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTTGTGAGTGCTTCTATTTCATGCTTAGATAATGGACTGTGTATTCACTATAAAACGTGTAACATAATTGAACTTTTCTGTTTTACTTCAGGGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGATTTTCTGTGTTGGGATA</genome_strand>
        <mrna_strand>AGCTATGGATTCTGAAGAAGGAACACAACAACCCCAGCTAGTTCTGGCACACAAACTATTCCGTTTAACACATGCAGATGTCAATGACTTAAACAAAGTTCGTCTCCGTGAAGAAGTATTGGAAGCTGTACTCTCCAATG..........................................................................................................ATATGGTACCGTTGTATGAAACCCTAGTTACTAATGGGGTTTTGAGTTTGGATCAGAAGGTTCTAGATTCTATGCGTGCTAAAAATTGTGATGAGCTCAAAAAACTCGATGACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAACTTAGGTGAAAGTGAAGTTCGGGAAGCTCATTTGGCAAAATCATTGTTCTACGTTCGGATTGGTGACAAG...............................................................................................GAGAAAGCACTTGAACAACTCAAGGTGACTGAGAGCAAAACTGTTGCAGTTGGGCAAAAGATGGACTTGGTGTTCTACACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAAAGCATCGACAAGGCAAAGAA......................................................................................................ATTATTTGAAGTGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGCTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTAGATTCTATATCAACTTTTACCACATATGAGCTTTTTCCTTATGATACTTTCATATTTTATACGGTGCTTACGAGCATCATTACCTTGGATCGGGTTTCCTTGAAACAGAAG................................................................................................................................................GTAGTGGATGCACCAGAGATCTTGACAGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCATTATATGAGTGTCAGTACAAGTCATTTTTCTCCTCATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTTGACGGAGCATATTAAATTGGATCGCTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTACTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGGGGCCATGGCCAAGGTTTTTGGGGTGTCTGAGGATTTCATCGACTT........................................................................................GGAACTATCTCGGTTCATTCCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAGGAATGCTCTTTATCAGGCAACGATCAAGCAAGGGGACTTCTTGTTGAACCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCAT---TCA-A--------CTCTGAAAATCT-T-T-G--GTGGCA-TG-TA-CTTTTACCTTTTCATTTTGAGCTC-T--AGGAGTACCA-TTTAGTAATTTTTTGAAATC-AAGAGATTTTCTGTGCCTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0030C22-Q7p0M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8357-3" ref_strand="+" ref_description="SGN-M8357-3 C2_At4g24820-3 [cosii_markers]">
      <seq>tatacaccctttcgcaagcaaagtatctgaaaaacagggaaacctctgagagagaactatggattcggaagaaggaacccagcaaccccagctagttcttgcacacaaactattccttttgacacatccagatgtcaatgacttggataaagtttgtctccgtgaagaagtcttggaagctgtggtctccaacgatatggctccgttgtttgaaaccctagtttcaaaaggggtttttagtttgaatctggaggttcttgatcctatgcgtgttaagaatgctgatgagctcaaaaaactcgatgagaagattgctgatgcagaagaaaaccttggtgaaagtgaagttcgagaagctcatttggctaaatcattgttctacattcggattggtgacaaggggaaagcacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctggtgttctataccttgcagatgggactatttgacttggattttgacctcatctctaaatgcatagataaggcaaagaaattatttgaaaaggggggtgactgggagagaaagaacaggttgaaggtgtatgaagggttgttctgcatgtccactcgtaacttcaagaaagcagcggatcttttccttgattctatctcaacttttaccacatatgagcttttcccctatgatactttcatattttatactgtccttacgagcatcattaccttggaccgggtttctttgaaacaaaaggtcgtggatgcaccagagatcttgacagtaattggaaagattccatatctgtctgagtttatgaactcgctatatgagtgtcagtacaagtcatttttctcagcatttgctggcttgatggagcatattaaattggatcgttacttgcaaccacacttcagatattatatgagggaggtcagaacagttgtgtattcccagttcctggagtcctacaagagtgttactattgaggccatggccaaggcttttggggtgtctgaggatttcatcgacttggaactatctcggttcattgcagctgggaagttgcattgcaagatcgataaagtagcaggagtgttggaaactaatcgtcctgatgcaaagaatgctctttatcaggcaactatcaagcaaggggacttcttgttgaatcgcattcaaaagctttctcgtgtcattgatctctgaagccgttaaactgtggagttgtacttgttttcttcaactgtctgtagcactaatattgatatattttgccttttcattttgagctcttgggagtacaatttagtaattttctgaaaaaaaaaaaaaaaaaaactcagactagtctctctctctctctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-Q7p0M/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68296" stop="61742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67996" g_stop="67803" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="309" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="400" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64148" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="546" r_length="146" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64045" g_stop="63826" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="766" r_length="220" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63825" i_stop="63682" i_length="144">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63681" g_stop="63573" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="875" r_length="109" r_score="0.945"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63572" i_stop="62587" i_length="986">
            <donor d_prob="0.874" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62586" g_stop="62418" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="876" r_stop="1044" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62417" i_stop="62330" i_length="88">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62329" g_stop="62036" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1045" r_stop="1334" r_length="290" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1335" polyA_stop="1352"/>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-M8357-3" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>1338</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8357-3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67996" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64148"/>
          <exon e_start="64045" e_stop="63826"/>
          <exon e_start="63681" e_stop="63573"/>
          <exon e_start="62586" e_stop="62418"/>
          <exon e_start="62329" e_stop="62036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACACCCTTTCGCAAGCAAAGTATCTGAAAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAAAAGGTAGTCAATATGTACTCCCTCTAATATCCTTGTTTGCTGTATGAGGAATTTTCTAACTTCAAAATTTGTGTTCCCTTGGAATATCTGGGATGTTACTGTGATGAATGTACTTGCAAATTCATTTTTATCACGTATATGTTGCAGGTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTGGTAAGCTTTTCCATTGATAATTTTTTCTTTTCGTATGTGAAGTGTGTCTTCGTAGTTTGCAAAGGTCTGCACACAAAAGTGTATGTAGATTATGTCTGATGGGGGTCCCTGATGCATTTTCTTGAGAATTTGATTGAGAATAGTGGTATTTGGCTATTTGCAAGGGCTTGATTACTGATAATCCAGTTTGGAGGTTTTGATTCTCAGATGACAGTGTTTCCTTTTTGGAGTAACTTGATAGTGAAATAGGTTACCACTGTTGTATAGAAACGTACCCCCTTTTCTTGTCTGAAAGTCTTTTGAATATCAGCACGAATGTATGGGGTCTTAGTGCTCTTTATTAGTCATGCAAGTAGTTTGCTTGATTGGACTAAAGGGATGTTCTTTCTGGCACATATTAAAACAGTAAAAAAGATGCTATTTCCGCTCCTGAAACTTGAAACTTTTCGAATGGATAATAGTTCTTTTCCAATTGCATAGAAAGTAATATCTCGTCATCTTTGTTAAGTTTGACAGGGAGTTTGTTTGGGTTAGGAGTTGGGGTAGGTGGGTGGACTTGTAATTCTCATTGCAGTTAGTCTTAGCTTGCATAGTCTGCTCACTTCTCTTTGTAATAATAGCTAATAAATCTTACATTGAGTTCTCTTCAGAGAACTAACTCAAATTTGTAGGGCAGTTACATTCACTTGAATTTCCCAACTGATTATTGGAGATGGGGGCAATGAGAGACCAATTGACCTTTGCGCACACACAAAAAAGATTGATACCTTTATAAAAAAAATTGACAAACCTAAATGTGTGTTTATAGACAGGCGTTAAAATGTGATCTGTAAGTATCGAGTTACAGGAGAGATAAACATGCTATATCTGTCATATACTCGTGATTTGTGATTTACCTATATGTTGATTGCTAGGGCCATGTATGTGGGCCATGAAATGATATATCAGTTGCAGAATGGTTGAATTTTACCTTAATGTGTTTTCAGCTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTTGTGAGTGCTTCTATTTCATGCTTAGATAATGGACTGTGTATTCACTATAAAACGTGTAACATAATTGAACTTTTCTGTTTTACTTCAGGGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGT-GCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAA</genome_strand>
        <mrna_strand>TATACACCCTTTCGCAAGCAAAGTATCTGAAAAACAGGGAAACCTCTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAGCAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTTGTCTCCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAACG..........................................................................................................ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAATGCTGATGAGCTCAAAAAACTCGATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAACCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTCGGATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTGGTGTTCTATACCTTGCAGATGGGACTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTTGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCGGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCTTTGAAACAAAAG................................................................................................................................................GTCGTGGATGCACCAGAGATCTTGACAGTAATTGGAAAGATTCCATATCTGTCTGAGTTTATGAACTCGCTATATGAGTGTCAGTACAAGTCATTTTTCTCAGCATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTT........................................................................................GGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATCGATAAAGTAGCAGGAGTGTTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACTGTGGAGTTGTACTTG-TTT-TCTTCAACTGTCTGTAGCACTAATATTGATATATTTTGCCTTTTCATTTTGAGCTCTT--GGGAGTA-CAATTTAGTAATTTTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0030C22-Q7p0M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1930" ref_strand="+" ref_description="SGN-M1930 T1328 [cos_markers]">
      <seq>aaaaatagtgaaacctttgagagagaactatggattcggaagaaggaacccagcaaccccagctagttcttgcacacaaactattccttttgacacatccagatgtcaatgacttggataaagttcgtcttcgtgaagaagtcttggaagctgtggtctccaatgatatggctccgttgtttgaaaccctagtttcaaaaggggtttttagtttgaatctggaggttcttgatcctatgcgtgttaagaatgctgatgagcttaaaaaactcgatgagaagattgctgatgcagaagaaaatcttggtgaaagtgaagttcgagaagctcatttggctaaatcattgttctacattaggattggtgacaaggggaaagcacttgaacaactcaaggtgactgagaaaaaaactgttgcagttgggcaaaagatggacctggtgttctataccttgcagatgggattatttgacttggattttgacctcatctctaaatgcatagataaggcaaagaaattatttgaaaaggggggtgactgggagagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-Q7p0M/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="68267" stop="63712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67967" g_stop="67803" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67696" g_stop="67582" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="280" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64479" g_stop="64389" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="371" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64293" g_stop="64148" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="517" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64045" g_stop="64012" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="551" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-M1930" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67967" e_stop="67803"/>
          <exon e_start="67696" e_stop="67582"/>
          <exon e_start="64479" e_stop="64389"/>
          <exon e_start="64293" e_stop="64148"/>
          <exon e_start="64045" e_stop="64012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATGGTACATCTGATTCATAATGTTTTCTTTTTAAAGTTCAAATTTTTTGTTTTGCTTTATGGATTTGTATTGATTTGCTTGTAAATGGGGTGTTTTTTTTCTCTTCCAGATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAAGTGAGTACTTTAAATCTGCATATTATGTGATCTCTGAATTTGAATTTTGTCCCTTTAGAGCATACCAATTATAAGTTAAAAAGTCATGTATAGATAACATTGTCTAAGAGGCGACATAATAGTATTGGAGTACAGAATTTGAAGTATTCTGTAATTAGAGTATTGAATTTTAGTATATGATCATATAATTTCTCCCAACAGGTAAGAGTCATTGAGAAGGTTGTGAGCTAAAATATGAAAGTTGGTATATTTCATTCAAAGATTAGTGAAATTGGAAGTGAAGTTCTGATTTTGGGATCCACTTATAATCTAATGATCTGGCTGTATTATATACATATTTGGTATTATAAATAGAGGCTGAAGGGGCTGGTGGAAAAGAGATGCTCACAACCTCATAGAAGCTTAGTTTTATTAGAGTTAAGTAATACTGACGGGAGCACTGTTCTTAGCTTCTTAGTAAGCCCTGCATTTGGGGCATGAGCGTTTCCATATTCTCCACCTACTTTCTTTAAATGGTATATTCGATGAACACGTGGAGTATAATTTGGTGAAACTTATGGTACTCAGAGACGAGGGTCTGAATCCAGAAGTCAGATTTGTCATAACCTATATCATAGGATTTGGGTTTACGTATAGGAGTATGGGTGCAGTATTAGGATACAACCAATACATGCATAATACGATGTATACTACAAGAACATACCTAGTGTAGTTCACAGAGTCTGGGCACATACATATACAAGTGTATATATTTTGACAACTAAAACAATATCAAAGTTAGTGTAATCAAATTCTCTGTAAACATTTAATATATTATTCATAAGCTATCTTGTGTAATAGCAAAGTATTTTAGTGTTGTATGTGAATATATGCATTATTAGGTGTCCAGCTAGCTTGCGTGCACCTCTATGAATTCCACGGGCTACCTACCACCTTTTATGTGAGTATGTCTGTATGTGACCATATACATATATGACATAAACGCAATATCAAACCAAGTACACAATCATTCCATACTTCTTTGGCCTAGGTGTAGTTAAATCACCTAAGTTGTCCAAATCAGCAAATCTAATTTGAATACAACCCCTGCATCCTAAACGTATCGTATTGTATTGTATCGATCTGGATGCAGCAATGATTTTGAAGGGTATGAGCAATGGGGGTGTACATTATTTTTTTTGGTAGTCAAATCAAACAAAACCAATGTAGTATAATTTAGTTTTGTCGAATTTTTTGTGGTTATTTTCAGTTTTGTGTAGATGTGGTTGATAAGTCAAAAAAATTGATACTACCTAACTTGGCAATCAGTGTACGCATATGACAAAAATAGTGCAAGTCAAGTCACACATAATGTGTATGTCAAAATTGGTGTAAGAAGTTCTGGATCTGTTGACTAGTTTGCACCTAAAAAAGAATGTTTTTGCTACTCTTGTAAATGTTCTATTTTTAATGTTTATTAAAATTTTCACGACCTATTTATGCAAAATTTATTCAACAGTATCATGAAATTTTGCTTAATCCTAATATGAACTACTTTTCTATTCATATATTGTTATCTCTAAAGATTTAAGGATCACATGATCTTAAACATGTCAGTCAAATCCAACCATTGGAATGCTAGTGTACTGTTTAGCAACAAAGAGGATTTTGCCTCAATTACTTCCTCTTCCCCTTTCCGAATAGAAGTAGATAAGGTCTTTGAGAATTATCTGATTTCAAAGACCAGAGTGTTGAATTGGTAAGCAGGAACCAAAATATATAAGCTTGGGGTCAGTTGATTGAAATCATCATTTTGCAAAATGCCAACATAGTTCCAATGTGACTAAAAACAGAAACCAAAAACTAACCCACTTTTCTTCATTTCCCAATTATAGACTTATGCAAGCTCCACTTATCTTACCGACCTATTGCATCCAAGAATTTGCAGAAATATCAGCATAATTGATTCTCTCTCAATAGATTTTTGACAAGAATTCTTAACCCCTCTGGTGATGACTTCAAAGTGAACTATTTTTGCAATCAATCCTTATTATATATATAGGCTATAGCTAGTGCAGCACCAGCACCATACCTTCAAGAAAGCCAAGAGCACTACTGTGCAAAAAGGAGCTTACAGAGAGCCTATCAAATCTATCAAGGAGTCTGTCTCTCCTCTACTCTACCTTCTTTTCACCAAAACTAGAACAACATAACACAACTCATCTTGAGCTTCTGTGTTGAAATCTGCTCGCCTTGAAAGATTCTAGCTTTTCTCTCTATCATAATTGATCAACATATGCAAACTGGCACCATCGTCCACCACCTGTTCAGTTTCACTAATGTTTGATTGGAATTTAATGAATTCAGAACCTCAACACTGGTAGCTGTTTTTGCAATCAATCTCTTCTGCATCGCTAAGTGAAAGTTTTATTACTCATTAATATATGTATATGTGTGTGTATTTGTCGGTTTTGTTTTATTTTTTTGGTTTAAACCAACCTAAATATTGTTGGTTTTTAAAAATTTACTTCCAAACAATAGTCGGGTATACTCGTTTTTTTGGTTTGTTTTGGTTTTTCTGTTTCATTTGAACATCCTTACTGGGCAACGTAAGGTGAAACTATAAGCTAAATGTCCTTAATCCTCGGATAACCCTCAGTTCGTGTCATACTATTCCCAAGGATCCGGGGGACATCATCCTATTCTTAAATAGTTTATGAAGGAGATAGGTGTTTAGAATTTTTTGACAAATCCTCTATACTTTTGATGTAATTACTAAAGGAGTTCACTATTGGATACTTCTCTGTTTATAATACCAGTTAACTTTCTAAAAAAAAGGTTTGTATAATTGACTCATTGTTCATGTTTATCTTTATTTTTACAATAATTGAGGGAAAGTAATGACTTGCTTAGTGGATGGGATTATCATTCTTAAAAAGGTTATAGTGCGTAAAATGTATGGATGCTCTGAGCCAATTTGGGCATACCTGCTTGTGCTGTTTCAATTTTTTTATTCATAGTCAACGAAAGTGAGAGAAAGGTGTGGTTTATTTTGCATAGAATAGAGATTCACTGTTATTTTCAGAACTTAAACCACATATCTGACTTTATATATTCGTCAAGGATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAGGCATGCTATCTCTTATTCATTCAAATGATTGTTCAGAGTTCATTTGATCACACTGGGCAAATCTCAATCAAGCTTTGTTGAATTTAAAATTTCAGGGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAAGTAAGTCGGAGTGTTAACAGCCAGTTTAGATGTTATTACACATGATGTTCTAAATGCCTTTTTTAGTTATTGAGCTAACTCCCAATGTTTGGTGGCTGACAGATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAG</genome_strand>
        <mrna_strand>AAAAATAGTGAAACCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAGCAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATG..........................................................................................................ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAATGCTGATGAGCTTAAAAAACTCGATGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGGATTGGTGACAAG...............................................................................................GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTGGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAA......................................................................................................ATTATTTGAAAAGGGGGGTGACTGGGAGAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="21158" PGL_stop="15068"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21158" e_stop="20845"/>
            <exon e_start="20514" e_stop="20368"/>
            <exon e_start="20264" e_stop="20202"/>
            <exon e_start="15667" e_stop="15501"/>
            <exon e_start="15396" e_stop="15068"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.925" acc_prob="0.471" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21158" e_stop="20845" e_length="314"/>
          </exon>
          <intron i_serial="1" don_prob="0.925" acc_prob="0.471">
            <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20514" e_stop="20368" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20264" e_stop="20202" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="20201" i_stop="15668" i_length="4534"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15667" e_stop="15501" e_length="167"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15500" i_stop="15397" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15396" e_stop="15068" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21158" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15501"/>
              <exon start="15396" stop="15068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21141" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15501"/>
              <exon start="15396" stop="15279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9089-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTCTCCAAGTACACTAGAGAGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG : ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG : ATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAG : CTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAA : GGACTGGCTGAATCCAGAACTCTTCAAGTGAGATGTCTACAGAGAGGATGACACAATTATCCTGTTGTTACCGCGTGTGATATTTGGTGTTTATCCCTCCCGCGTAGTTGCTGAGTTTATGAAGAAACAATCTAATGACTCTGAATTTGCAGACTGTTGAAGATTACCAATTACCTAATGGCTTTTGAATATTGTTAGAAGATAGGGTTCATATCATTGCATAATTACGCGTTTCTAATAGGTCAAACATGAATTTTTTGAGCAACACAACTCAATTTTGTACTGAATGGGGAACCATGAGTTTTTATTTTTAAACTAAATTATTTTGC</gDNA_template>
            <first_frame> K  I  L  Q  V  H  *  R  A  S  E  *  S  K  T  Q  K  Q  I  R  S  A  G  R  R  N  K  D  S  Q  S  D  C  L  K  R  W  V  A  N  R  I  T  R  F  I  K  T  P  T  S  S  *  S  F  M  P  L  S  T  R  L  P  P  S  M  V  F  F  L  V  E  Y  P  A  T  A  T  T  S  K  L  S  N  L  F  R  C  S  T  L  R  L  V  Y  F  H  H  S  K  F  H  L  S  * :   L  R  S  T  M  L  I  K  V  *  V  L  W  V  I  F  T  Q  M  K  D  P  M  I  L  R  S  E  M  W  P  R  I  L  V  I  I  S  T  N  I  S  L  K  L  L  Y  F  * :   W  I  T  R  S  L  K  L  Y  *  R  R  A  K  T  G  V  L  L  C  S :   F  T  L  R  N  H  L  G  A  G  N  *  R  E  L  M  Q  A  A  L  *  K  S  K  N  H  L  Q  I  L  F  F  *  T  M  S  H  Q  G  N  G  R  T  S  W  I  S  M  T  I  W  M  T  L  A   : R  T  G  *  I  Q  N  S  S  S  E  M  S  T  E  R  M  T  Q  L  S  C  C  Y  R  V  *  Y  L  V  F  I  P  P  A  *  L  L  S  L  *  R  N  N  L  M  T  L  N  L  Q  T  V  E  D  Y  Q  L  P  N  G  F  *  I  L  L  E  D  R  V  H  I  I  A  *  L  R  V  S  N  R  S  N  M  N  F  L  S  N  T  T  Q  F  C  T  E  W  G  T  M  S  F  Y  F  *  T  K  L  F  C </first_frame>
            <second_frame>  K  F  S  K  Y  T  R  E  H  R  S  S  Q  R  R  R  N  R  F  D  R  P  A  A  G  I  R  I  L  R  V  I  V  *  R  D  G  W  R  I  E  L  R  D  S  S  K  R  L  H  Q  V  N  P  S  C  P  *  A  Q  D  F  L  R  Q  W  C  S  S  W  *  N  I  R  Q  R  R  Q  R  R  N  C  R  I  C  S  V  V  P  L  S  D  W  F  T  S  T  T  R  N  F  T  Y  H   : D  *  G  V  L  C  *  *  R  F  E  Y  C  G  L  F  S  R  K  *  K  I  R  *  F  *  G  R  K  C  G  Q  E  Y  W  *  S  Y  L  Q  I  F  P  S  S  C  F  T  S   : D  G  *  Q  E  A  *  S  F  T  E  G  G  Q  R  Q  E  S  C  Y  A   : A  L  H  *  G  I  I  *  E  L  E  T  S  G  S  *  C  K  R  L  S  E  N  Q  R  T  I  C  K  Y  C  S  S  R  L  C  L  I  R  E  M  E  G  H  R  G  F  R  *  P  S  G  *  H  *  Q  :  G  L  A  E  S  R  T  L  Q  V  R  C  L  Q  R  G  *  H  N  Y  P  V  V  T  A  C  D  I  W  C  L  S  L  P  R  S  C  *  V  Y  E  E  T  I  *  *  L  *  I  C  R  L  L  K  I  T  N  Y  L  M  A  F  E  Y  C  *  K  I  G  F  I  S  L  H  N  Y  A  F  L  I  G  Q  T  *  I  F  *  A  T  Q  L  N  F  V  L  N  G  E  P  *  V  F  I  F  K  L  N  Y  F   </second_frame>
            <third_frame>   N  S  P  S  T  L  E  S  I  G  V  V  K  D  A  E  T  D  S  I  G  R  P  P  E  *  G  F  S  E  *  L  F  E  E  M  G  G  E  S  N  Y  E  I  H  Q  N  A  Y  I  K  L  I  L  H  A  L  K  H  K  T  S  S  V  N  G  V  L  L  G  R  I  S  G  N  G  D  N  V  E  I  V  E  S  V  P  L  F  H  S  Q  I  G  L  L  P  P  L  E  I  S  L  I  M  :  I  E  E  Y  Y  A  D  K  G  L  S  I  V  G  Y  F  H  A  N  E  R  S  D  D  F  E  V  G  N  V  A  K  N  I  G  D  H  I  Y  K  Y  F  P  Q  A  A  L  L  L  :  M  D  N  K  K  L  E  A  L  L  K  E  G  K  D  R  S  P  V  M  Q  :  L  Y  T  K  E  S  S  R  S  W  K  L  A  G  A  D  A  S  G  S  L  K  I  K  E  P  S  A  N  I  V  L  L  D  Y  V  S  S  G  K  W  K  D  I  V  D  F  D  D  H  L  D  D  I  S  K :   D  W  L  N  P  E  L  F  K  *  D  V  Y  R  E  D  D  T  I  I  L  L  L  P  R  V  I  F  G  V  Y  P  S  R  V  V  A  E  F  M  K  K  Q  S  N  D  S  E  F  A  D  C  *  R  L  P  I  T  *  W  L  L  N  I  V  R  R  *  G  S  Y  H  C  I  I  T  R  F  *  *  V  K  H  E  F  F  E  Q  H  N  S  I  L  Y  *  M  G  N  H  E  F  L  F  L  N  *  I  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21063" stop="20845"/>
                    <exon start="20514" stop="20368"/>
                    <exon start="20264" stop="20202"/>
                    <exon start="15667" stop="15501"/>
                    <exon start="15396" stop="15366"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFEEMGGESNYEIHQNAYIKLILHALKHKTSSVNGVLLGRISGNGDNVEIVESVPLFHSQIGLLPPLEISLIMIEEYYADKGLSIVGYFHANERSDDFEVGNVAKNIGDHIYKYFPQAALLLMDNKKLEALLKEGKDRSPVMQLYTKESSRSWKLAGADASGSLKIKEPSANIVLLDYVSSGKWKDIVDFDDHLDDISKDWLNPELFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="67996" PGL_stop="62009"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67996" e_stop="67803"/>
            <exon e_start="67696" e_stop="67582"/>
            <exon e_start="64479" e_stop="64389"/>
            <exon e_start="64293" e_stop="64148"/>
            <exon e_start="64045" e_stop="63826"/>
            <exon e_start="63681" e_stop="63573"/>
            <exon e_start="62586" e_stop="62418"/>
            <exon e_start="62329" e_stop="62009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.989" e_score="0.982"/>
          <exon-intron don_prob="1.000" acc_prob="0.890" e_score="0.991"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="0.989"/>
          <exon-intron don_prob="0.839" acc_prob="0.998" e_score="0.993"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.986"/>
          <exon-intron don_prob="0.874" acc_prob="0.970" e_score="0.945"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="67996" e_stop="67803" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.989">
            <gDNA_intron_boundary i_start="67802" i_stop="67697" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="67696" e_stop="67582" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.890">
            <gDNA_intron_boundary i_start="67581" i_stop="64480" i_length="3102"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="64479" e_stop="64389" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="64388" i_stop="64294" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="64293" e_stop="64148" e_length="146"/>
          </exon>
          <intron i_serial="4" don_prob="0.839" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64147" i_stop="64046" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="64045" e_stop="63826" e_length="220"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63825" i_stop="63682" i_length="144"/>
          </intron>
          <exon e_serial="6" e_score="0.945">
            <gDNA_exon_boundary e_start="63681" e_stop="63573" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="0.874" acc_prob="0.970">
            <gDNA_intron_boundary i_start="63572" i_stop="62587" i_length="986"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="62586" e_stop="62418" e_length="169"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62417" i_stop="62330" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="0.935">
            <gDNA_exon_boundary e_start="62329" e_stop="62009" e_length="321"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67996" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64148"/>
              <exon start="64045" stop="63826"/>
              <exon start="63681" stop="63573"/>
              <exon start="62586" stop="62418"/>
              <exon start="62329" stop="62036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8357-3" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67967" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64148"/>
              <exon start="64045" stop="64012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67942" stop="67803"/>
              <exon start="67696" stop="67582"/>
              <exon start="64479" stop="64389"/>
              <exon start="64293" stop="64148"/>
              <exon start="64045" stop="63826"/>
              <exon start="63681" stop="63573"/>
              <exon start="62586" stop="62418"/>
              <exon start="62329" stop="62009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8357" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTACACCCTTTCGCAAGCAAAGTATCTGAAAACTAGTGAAATCTTTGAGAGAGAACTATGGATTCGGAAGAAGGAACCCAACAACCCCAGCTAGTTCTTGCACACAAACTATTCCTTTTGACACATCCAGATGTCAATGACTTGGATAAAGTTCGTCTTCGTGAAGAAGTCTTGGAAGCTGTGGTCTCCAATG : ATATGGCTCCGTTGTTTGAAACCCTAGTTTCAAAAGGGGTTTTTAGTTTGAATCTGGAGGTTCTTGATCCTATGCGTGTTAAGAACGCTGATGAGCTTAAAAAACTCGATGAGAA : GATTGCTGATGCAGAAGAAAATCTTGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCTAAATCATTGTTCTACATTAGAATTGGTGACAAG : GGGAAAGCACTTGAACAACTCAAGGTGACTGAGAAAAAAACTGTTGCAGTTGGGCAAAAGATGGACCTAGTGTTCTATACCTTGCAGATGGGATTATTTGACTTGGATTTTGACCTCATCTCTAAATGCATAGATAAGGCAAAGAA : ATTATTCGAAAAGGGGGGTGACTGGGAGAGAAAGAACAGGTTGAAGGTGTATGAAGGGTTGTTCTGCATGTCCACTCGTAACTTCAAGAAAGCAGCAGATCTTTTCCTTGATTCTATCTCAACTTTTACCACATATGAGCTTTTCCCCTATGATACTTTCATATTTTATACTGTCCTTACGAGCATCATTACCTTGGACCGGGTTTCCTTGAAACAAAAG : GTCGTGGATGCGCCAGAGATCTTGACTGTAATTGGAAAGATTCCATATCTGTCCGAGTTTATGAACTCGTTATATGATTGTCAATACAAGTCATTTTTCTCAGCATTTG : CTGGCTTGATGGAGCATATTAAATTGGATCGTTACTTGCAACCACACTTCAGATATTATATGAGGGAGGTCAGAACAGTTGTGTATTCCCAGTTCCTGGAGTCCTACAAGAGTGTTACTATTGAGGCCATGGCCAAGGCTTTTGGGGTGTCTGAGGATTTCATCGACTT : GGAACTATCTCGGTTCATTGCAGCTGGGAAGTTGCATTGCAAGATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGATTTTCTGTGTTGGGATA</gDNA_template>
            <first_frame> F  T  P  F  R  K  Q  S  I  *  K  L  V  K  S  L  R  E  N  Y  G  F  G  R  R  N  P  T  T  P  A  S  S  C  T  Q  T  I  P  F  D  T  S  R  C  Q  *  L  G  *  S  S  S  S  *  R  S  L  G  S  C  G  L  Q  * :   Y  G  S  V  V  *  N  P  S  F  K  R  G  F  *  F  E  S  G  G  S  *  S  Y  A  C  *  E  R  *  *  A  *  K  T  R  *  E  :  D  C  *  C  R  R  K  S  W  *  K  *  S  S  R  S  S  F  G  *  I  I  V  L  H  *  N  W  *  Q   : G  E  S  T  *  T  T  Q  G  D  *  E  K  N  C  C  S  W  A  K  D  G  P  S  V  L  Y  L  A  D  G  I  I  *  L  G  F  *  P  H  L  *  M  H  R  *  G  K  E  :  I  I  R  K  G  G  *  L  G  E  K  E  Q  V  E  G  V  *  R  V  V  L  H  V  H  S  *  L  Q  E  S  S  R  S  F  P  *  F  Y  L  N  F  Y  H  I  *  A  F  P  L  *  Y  F  H  I  L  Y  C  P  Y  E  H  H  Y  L  G  P  G  F  L  E  T  K   : G  R  G  C  A  R  D  L  D  C  N  W  K  D  S  I  S  V  R  V  Y  E  L  V  I  *  L  S  I  Q  V  I  F  L  S  I  C :   W  L  D  G  A  Y  *  I  G  S  L  L  A  T  T  L  Q  I  L  Y  E  G  G  Q  N  S  C  V  F  P  V  P  G  V  L  Q  E  C  Y  Y  *  G  H  G  Q  G  F  W  G  V  *  G  F  H  R  L  :  G  T  I  S  V  H  C  S  W  E  V  A  L  Q  D  *  *  S  S  R  S  I  G  N  *  S  S  *  C  K  E  C  S  L  S  G  N  Y  Q  A  R  G  L  L  V  E  S  H  S  K  A  F  S  C  H  *  S  L  K  P  L  N  R  A  L  Y  L  F  S  L  Q  L  S  V  A  L  I  L  I  Y  S  A  F  S  Y  *  T  L  G  G  V  L  F  *  *  F  S  E  I  K  E  I  F  C  V  G  I </first_frame>
            <second_frame>  L  H  P  F  A  S  K  V  S  E  N  *  *  N  L  *  E  R  T  M  D  S  E  E  G  T  Q  Q  P  Q  L  V  L  A  H  K  L  F  L  L  T  H  P  D  V  N  D  L  D  K  V  R  L  R  E  E  V  L  E  A  V  V  S  N   : D  M  A  P  L  F  E  T  L  V  S  K  G  V  F  S  L  N  L  E  V  L  D  P  M  R  V  K  N  A  D  E  L  K  K  L  D  E  K :   I  A  D  A  E  E  N  L  G  E  S  E  V  R  E  A  H  L  A  K  S  L  F  Y  I  R  I  G  D  K  :  G  K  A  L  E  Q  L  K  V  T  E  K  K  T  V  A  V  G  Q  K  M  D  L  V  F  Y  T  L  Q  M  G  L  F  D  L  D  F  D  L  I  S  K  C  I  D  K  A  K  K :   L  F  E  K  G  G  D  W  E  R  K  N  R  L  K  V  Y  E  G  L  F  C  M  S  T  R  N  F  K  K  A  A  D  L  F  L  D  S  I  S  T  F  T  T  Y  E  L  F  P  Y  D  T  F  I  F  Y  T  V  L  T  S  I  I  T  L  D  R  V  S  L  K  Q  K  :  V  V  D  A  P  E  I  L  T  V  I  G  K  I  P  Y  L  S  E  F  M  N  S  L  Y  D  C  Q  Y  K  S  F  F  S  A  F   : A  G  L  M  E  H  I  K  L  D  R  Y  L  Q  P  H  F  R  Y  Y  M  R  E  V  R  T  V  V  Y  S  Q  F  L  E  S  Y  K  S  V  T  I  E  A  M  A  K  A  F  G  V  S  E  D  F  I  D  L :   E  L  S  R  F  I  A  A  G  K  L  H  C  K  I  D  K  V  A  G  V  L  E  T  N  R  P  D  A  K  N  A  L  Y  Q  A  T  I  K  Q  G  D  F  L  L  N  R  I  Q  K  L  S  R  V  I  D  L  *  S  R  *  T  V  R  Y  T  C  F  L  F  N  S  L  *  L  *  Y  *  Y  I  L  P  F  H  I  E  L  L  G  E  Y  Y  F  S  N  F  L  K  S  K  R  F  S  V  L  G   </second_frame>
            <third_frame>   Y  T  L  S  Q  A  K  Y  L  K  T  S  E  I  F  E  R  E  L  W  I  R  K  K  E  P  N  N  P  S  *  F  L  H  T  N  Y  S  F  *  H  I  Q  M  S  M  T  W  I  K  F  V  F  V  K  K  S  W  K  L  W  S  P  M  :  I  W  L  R  C  L  K  P  *  F  Q  K  G  F  L  V  *  I  W  R  F  L  I  L  C  V  L  R  T  L  M  S  L  K  N  S  M  R   : R  L  L  M  Q  K  K  I  L  V  K  V  K  F  E  K  L  I  W  L  N  H  C  S  T  L  E  L  V  T  R :   G  K  H  L  N  N  S  R  *  L  R  K  K  L  L  Q  L  G  K  R  W  T  *  C  S  I  P  C  R  W  D  Y  L  T  W  I  L  T  S  S  L  N  A  *  I  R  Q  R   : N  Y  S  K  R  G  V  T  G  R  E  R  T  G  *  R  C  M  K  G  C  S  A  C  P  L  V  T  S  R  K  Q  Q  I  F  S  L  I  L  S  Q  L  L  P  H  M  S  F  S  P  M  I  L  S  Y  F  I  L  S  L  R  A  S  L  P  W  T  G  F  P  *  N  K  R :   S  W  M  R  Q  R  S  *  L  *  L  E  R  F  H  I  C  P  S  L  *  T  R  Y  M  I  V  N  T  S  H  F  S  Q  H  L  :  L  A  *  W  S  I  L  N  W  I  V  T  C  N  H  T  S  D  I  I  *  G  R  S  E  Q  L  C  I  P  S  S  W  S  P  T  R  V  L  L  L  R  P  W  P  R  L  L  G  C  L  R  I  S  S  T   : W  N  Y  L  G  S  L  Q  L  G  S  C  I  A  R  L  I  K  *  Q  E  Y  W  K  L  I  V  L  M  Q  R  M  L  F  I  R  Q  L  S  S  K  G  T  S  C  *  I  A  F  K  S  F  L  V  S  L  I  S  E  A  V  K  P  C  V  I  L  V  F  S  S  T  L  C  S  S  N  I  D  I  F  C  L  F  I  L  N  S  W  G  S  I  I  L  V  I  F  *  N  Q  R  D  F  L  C  W  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67947" stop="67803"/>
                    <exon start="67696" stop="67582"/>
                    <exon start="64479" stop="64389"/>
                    <exon start="64293" stop="64148"/>
                    <exon start="64045" stop="63826"/>
                    <exon start="63681" stop="63573"/>
                    <exon start="62586" stop="62418"/>
                    <exon start="62329" stop="62155"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1167</number_coding_nucleotides>
                  <number_encoded_amino_acids>389</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERTMDSEEGTQQPQLVLAHKLFLLTHPDVNDLDKVRLREEVLEAVVSNDMAPLFETLVSKGVFSLNLEVLDPMRVKNADELKKLDEKIADAEENLGESEVREAHLAKSLFYIRIGDKGKALEQLKVTEKKTVAVGQKMDLVFYTLQMGLFDLDFDLISKCIDKAKKLFEKGGDWERKNRLKVYEGLFCMSTRNFKKAADLFLDSISTFTTYELFPYDTFIFYTVLTSIITLDRVSLKQKVVDAPEILTVIGKIPYLSEFMNSLYDCQYKSFFSAFAGLMEHIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVSEDFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 18 chains have been computed
$ 
$ memory statistics:
$ 9864 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 1972 bytes was the average size of a spliced alignment
$ 7056 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3528 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 22 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-23 14:15:14
-->
