<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-06 23:30:57"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0030C22-WwPK4/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0030C22-WwPK4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0030C22-WwPK4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343520" ref_strand="-" ref_description="SGN-U343520        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: ATNUDT20 | MutT/nudix family protein, similar to SP:P41888 Thiamine pyrophosphokinase (EC 2.7.6.2) (TPK) (Thiamine kinase) {Schizosaccharomyces pombe}; contains Pfam profile PF00293: NUDIX domain | chr5:6563101-6565634 FORWARD | Aliases: F7K24.210, F7K24_210, ATNUDT20(evalue: 4e-06, score=48.5)">
      <seq>taagtataattgtaaattatattgatggttgacactttgaggtagaagagaacaccacacaaggaaacaatttatttacttttttttaaaaatgcattatttcatacacaagtacaataggaagtatttcataactaatgtcttgcacaaattcagtatacaatttgatggaatactcataaatgaaaaaaaatattaaatttcctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-WwPK4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="+" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="243" stop="1049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="543" g_stop="748" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="207" polyA_stop="226"/>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="+" ref_id="SGN-U343520" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>206</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343520" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="543" e_stop="748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTATAATTGTAAATTATATTGATGGTTGACACTTTGAGGTAGAAGAGAACACCACACAAGGAAACAATTTATTTACTTTTTTTTAAAAATGCATTATTTCATACACAAGTACAATAGGAAGTATTTCATAACTAATGTCTTGCACAAATTCAGTATACAATTTGATGGAATACTCATAAATGAAAAAAAATATTAAATTTCCT</genome_strand>
        <mrna_strand>TAAGTATAATTGTAAATTATATTGATGGTTGACACTTTGAGGTAGAAGAGAACACCACACAAGGAAACAATTTATTTACTTTTTTTTAAAAATGCATTATTTCATACACAAGTACAATAGGAAGTATTTCATAACTAATGTCTTGCACAAATTCAGTATACAATTTGATGGAATACTCATAAATGAAAAAAAATATTAAATTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0030C22-WwPK4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318226" ref_strand="+" ref_description="SGN-U318226        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: | Symbol: EMB2731 | expressed protein, contains Pfam PF03665: Uncharacterised protein family (UPF0172) | chr5:22672658-22675274 REVERSE | Aliases: MYN21.5, MYN21_5, EMB2731, EMBRYO DEFECTIVE 2731(evalue: 1e-70, score=263) genbank/nr: gi|21592839|gb|AAM64789.1| unknown [Arabidopsis thaliana](evalue: 7e-69, score=263)">
      <seq>aaaattctccaagtacactagagagcatcggagtagtcaaagacgcagaaacagattcgatcggccggccgccggaataaggattctcagagtgattgtttgaagagatgggtggcgaatcgaattacgagattcatcaaaacgcctacatcaagttaatccttcatgcccttaagcacaagacttcctccgtcaatggtgttcttcttggtagaatatccggcaacggcgacaacgtcgaaattgtcgaatctgttccgttgttccactctcagattggtttacttccaccactcgaaatttcacttatcatgattgaggagtactatgctgataaaggtttgagtattgtgggttattttcacgcaaatgaaagatccgatgattttgaggtcggaaatgtggccaagaatattggtgatcatatctacaaatatttccctcaagctgctttacttctgatggataacaagaagcttgaagctttactgaaggagggcaaagacaggagtcctgttatgcagctttacactaaggaatcatctaggagctggaaactagcgggagctgatgcaagcggctctctgaaaatcaaagaaccatctgcaaatattgttcttctagactatgtctcatcagggaaatggaaggacatcgtggatttcgatgaccatctggatgacattagcaaggactggctgaatccagaactcttcaagtgagatgtctacagagaggatgacacaattatcctgttgttaccgcgtgtgatatttggtgtttatccctcccgcgtagttgctgagtttatgaagaaacaatctaatgactctgaatttgcagactgttgaagattaccaattacctaatggcttttgaatattgttagaagatagggttcatatcattgcataattacgcgtttctaataggtcaaacatgaattttttgagcaacacaactcaattttgtactgaatggggaaccatgagtttttatttttaaactaaattattttgcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-WwPK4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="21458" stop="14767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21158" g_stop="20845" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20514" g_stop="20368" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="461" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20264" g_stop="20202" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="524" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20201" i_stop="15668" i_length="4534">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15667" g_stop="15501" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="691" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15500" i_stop="15397" i_length="104">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15396" g_stop="15068" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="1020" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1021" polyA_stop="1036"/>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-U318226" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1020</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21158" e_stop="20845"/>
          <exon e_start="20514" e_stop="20368"/>
          <exon e_start="20264" e_stop="20202"/>
          <exon e_start="15667" e_stop="15501"/>
          <exon e_start="15396" e_stop="15068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCTCCAAGTACACTAGAGAGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATGGTCAGTTCCCCTCCCTTTGAATTAAAGTGGATTTTAGTAGCGCAATTGAAGTATACTAATTGTTTTGATAATGAAATTGAGCATTAGGTTTGTATTTTGTAGTAACTGAAGTACACTTATAATGAAATTGAAGTACACTAATTGCTCGGGCTGGGCTCAGCTTGATGCCCAGGCCTAATTACAGGTTAATACTTGTAGATGTGGGTTCGTATCCACTATATCTGTAGGATAATAGATTTGAACTGAGTATAAAGGGATGTTTTGGAGAATTTTCAACTAAATATGTACCATGCCTTCTAACTTGTTTGGAAGTCTCTTTTATTTGGATAGATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTGGTACCCTTTTTTCTTACTCAACATAGTTCTAATTCAAAATGTTCCAATCTTTAAATTGTAAGTTAACAAAGTGCTTGAGCTTAATTTGCCTTGTATTTTACAGATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAGGTATGCACATATCATTTTAATGAGCTATTGGCTTTTGAACTAAATTCAGTCTTTTTATTCTTCTTCATATTTTTATCCGGTCTAGTTAATTATTGATGCCAAATTCCAGTAATTATGCCATTCAAATTTGAACTTTTGGTGCATTAAGCATTAGTGACTACGTGACCAACTTCATATATATAGTTTATTCTTCCTTGATAATCATTCTAGCTGTCTTATGGTTTCTCTTCTCTATCTGTCCCATTTTTCACGTGGTGATGAAGTTAGTTGGAATAATGTGGTTACTTTAGTTCTTTTGTTTCTATTTAATGCGGAAGGTTATTAGTTCTTTCCATTTACTAGAGAACTTCGTGTTGTTATTTGACGACATAGAACTCTGTCCTTTTGTTTTGATAATTATGGGAGTCCAGGAAATCAAGTTCACATCTAAGTCTGTATGTCCACAATAATCTTAATGTTCTATTTCTGCTGGGTGAACAAATGAAAATCCTTGTTTTATATTCTATCTGCGTTGTTTCTAATTAATCCAGTTGGCACGAAGGAAAAGCAGTTGATAATCCTACTTCTCTGTGCAAAGGGTAATGAACTACTATGCAATGGCTAATGGGTATGACTTGAGGATTGTAAAAACTGATCCCACTAGGACTTGGTATATTTGTGAACTTGGAATGTCCTTTTAGATGTCCTATCTCACAGGATAAAATGAGTGTTGGGTTGAGTAACAAAACTTTGAAATCAGAACATAATTGTGATCCTTGTTACAAAAACCCAAGAGAACTCATTAGCACAATACTTGAAGAAAGAATAACTCCCTCTGTCCCAATTTAAGTGTCTTAGTTTAATTGTCCACAAAGTTTATGAAATAAAGAAATGTTTGAATCTTGTTGTCTTGAATTAAAGATGTGTGTAGTCCTTTAAATCTTGTGTTCTTAAATTTGCCTAGAAGAATGTTGGAACTGAAAAATATACTAAAGATAGAAAGAGACACTCTTTTTGGGACAGTCCAAAAATGAAAGACACTTAAAAAATCAGGATGGAGGGAGTACAAAACAATTCCAAGTACACTGTTAAGGAGCTTCAAGGATAATTATTATAATCTTGAAATATATTTAAAGGGCCATCCAAGTCATAAATATCGATTTTTTTCCGTCCTCAAGCCATACTTATTAGCCATTGCATAGTAGTTCATTATCCTTCTACCTTCCACAATATCAGAAAATGTCATATCCTTCTTCAACTCCCTTATAATTGTCCAGCCTACTAATAACCTCGATTTCTTCATCATACTCCAAATTGGCAAATCAAAAAATTATAGTCCTCAATAACATGATCATTATCAGATGCTACCTCAACGTCTACATGATATGTTTCGATATGATGCAAAATTATATGTTTATGGATGATCAAATTTGTCTCATCTGCAGCAAACAAGTGTATAACTCCCAACTCATGGCGAATAAGGTTCTGCAAAGCCCTAAAATACCATCATCTCCATCAATAATATAGTCCCTACTCGGGTCTGGCAACTAACAATTGTTTGACCTTAATAAACCTTAGCTCTTTCTTGAACTCTTCCACAAAAATCTTTATAAGAAAGCAGGTTTTTGGTCAAACCTATGACAGAAGTGCGCCAGTTTCTTACTATTGAATAAGTGAGGAGAAAAGACTCATTCACCCCATAGTGGAAACACACTTTCTCTTTGTCAATCATGCTTCGGTAAAGATCACATGCCAAGGAAAAAATGAGGGACCACATCAGCAACATACATAGGCTATACAAAATCTGTGAATATAAAAACTCTAGAATGACACAACACATTTTGGGACCATAAAAGAAAGGAACAGAACCATAAAAACACTGAAACTTTACATATTAAGCTATGATTTACATACTCAAAAATAAGAAACTCCACATTAACAGATTCTCTACCCACCACCTTAAATAATTATTTAAATAGAGAACCAGCCTTTATGAGCTATTCCTTTTGTCCTTCTCCCTCATAAACAAGCTATGAAGTCAACTTTGGCCATAGTTTTTTTCCCGATCAATTACCAAAAGAACTGAGTTAAGGCTTAAGGATTTGGGTCTGGTCGAGTAAGGGAATTGAGGAGAATGGATTATGGGTTTGGGCAAAAAGAGTCTGGGTCGGGTTCTAATATGGAGCGGTTAAAGCTAATTGGCATGGGTATTAAATAAGTGGGACATGTTAGTGATGTGACCTGTTTAATTTGATGTTATTGTCCAATTCAGTATTTTTAAACCAAAAATTGGTATTCAAACTGGCTATTTGAGCTGTTAGTGGTATGTGGCATGAATGTGCAAATTGTGTCATGGCAATGACAAAAATATGCACAACTAGTAATGAGTGGCACAGCAGAGCCATTTCTGATAGTTCAATGGTATATTTTTTCTTTTCTTCTTTTATTAAAAGACATGGGCAATCTCGTCATTTAGGTGGATTTAGTGGTCATGCTAATATGCGGAGTGGTAACCAAGGTAGGTCTCGTAAATCCTATTGGGCCTCAGTTTTGATTAAGAAATCAAATGCTGGGATTGCAAGCAAGTAGGTCACAAGAAAGCTGCTTGTCCCTGAACAAGAAACCAGGTGACCATTTTTATGAACCGAACCATAGCACTACCATCAAGGGCTTAACATGATTGGCCCGATGGTATCAAATCCCTATTTATGGATGTATTCTACACAAATCATTTTTCCATATAGGACACTAAATGCGTTACATTCTTGAATAGTTGAAACTCTTTCTTAGGACTGTTGTTAAGGTCTCGAAGGCAATTTCATTTGATAAAAAATTGGATATTCTTTTTGTATTTCCATCGAAGATGGGTTCATTTCTATAATACCATTGTTGAGGAGAACAACTTGTTCTTGAAATCATCATGGCTAAAAGATGAACATAATAATGGGTTCGAGAAAGAAGGAAAGTTGAGAACCCATCTGAGGTGGAAAAATTGTGGGCAAGTAAAATGAATAAAGTGAACTCATTTAGTTCAATGATGGGTTTGATGACTTTGTCCCAATTTTTTTTAATCTTGTTTGTTGGACTATATTCCCGTTGTGTTTATGAAATGGGTTTGTCATCCAATGTTACTTGGTCGAGTCTAAAGGAATTACAAGCATATAATGGTAGTCGATGTGAAGGAAAATACTGTAATTGACCTAAGCCAGTCAAAACATTTCCTACAAAAATTTTGATTGATGAGTTAGCTTTTGTTTAAATAACTCAGTTGTGTTTCTGATAATTGCTTTTGAGTATTGGTGTTAAAAAGGGGAAAAGAAAAAAGAATGAGATGTGGCAATCATTGAAGATGTGAAGGCGACCATAGCAGGTCGGAGAGGATGAGAAACAAAAGGAATTAATATGAGTTATATCAACCAAAAATTATGTTTTCATGCACTTAAAATTTAGGTGCATGACACCTATCATGTTGGTGATAGGCGTGCACGAGATATAATTTTGTCAAGTGAAAGTGTTCAAATAATCATTATGAAAGTTAGTGGTGGTGTCTATCTGAAAATTGATGCCATGTTTGAGGTATCTCTAGATTTGCCCATGATATTTGTTGTTGGCTAATATAAAAAGAATTAGAAATCCCATTCCAACATCTTCAGGGGGGAAAACAATATCAGCATCCAAGTTTGAATTCGAAATGGACCTTATTTTCTCTGTTTTAATATGGGATGAAGATGAATCACCATGCTTACCTTGCAACAGAGGAGAAAGTTGCTCTAACTCAATCAGATGAAATCAAGTTATCAGTTGCTTTCATCTTCATGTGAAAAACGGAGAACTATCTGTTATGAGTACTTGGCTTCTTATGAAAAGAGTTCCAATAGACAGCTGGCCTGAGAATTTTGAACTTCAGATTCTTCTTGGGGTAGTTTTGGAATTCCTTATTAATAAAGCCTTGCTGGATAGTTATATTGTTTGCATAATCTAAATCAGGTTCTCTTTACCCCTTTACCAATATTTCCATCAGTTCATTTTTTCCTTTTTTTTTTTTGGTAATCATGGTGTTTGCTTCAGTTTGTGCACACGTTGACTAATTCACGGGGCACATACTATCTTTCACCAGCACAAGTATCAGGACCAAGGCTTGGATAGATGGGAAGAAAGCGCCTAGGACTTTTATGTCCACTGTCATTTCGACCACATCATTGACCATTAGGCCCACACCCTTGCATACATATTACCGGTAGTGCTATATGTGGTTATTTTGAAATCCGTTGGATAACAATTTGTGATACTTAAATTGTCAATGTCGCTAATCTCTGTATTAGTTTGGTTCTCCTTTTATAATTTTGTTACATATTGCACTACAAGCTGATTCAGAGGTCCAGGTTCTGCTTGACTTTAAAGCTTGTTCTTGGCAATTATTTGTGTTTTCGTAATTTAGTCTTGTACAAAAATAGTTGTCTTGCTGGTATATGACTCTGATTTTATAGTTGTGTTCTTTAACAAGTTCATGTCAATATAGCAGTTTCCTTTACTTCAGCTCTTTTTCTTTATTCAGCTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAAGTAATAGCTACATACAATTATCTGCTTTAGCTCTGCTTTACATCCACATTGTTTTCTATAATTTACTTATGATTTCTTCTTCTCTTGCTAATTCATTTTGGTAGGGACTGGCTGAATCCAGAACTCTTCAAGTGAGATGTCTACAGAGAGGATGACACAATTATCCTGTTGTTACCGCGTGTGATATTTGGTGTTTATCCCTCCCGCGTAGTTGCTGAGTTTATGAAGAAACAATCTAATGACTCTGAATTTGCAGACTGTTGAAGATTACCAATTACCTAATGGCTTTTGAATATTGTTAGAAGATAGGGTTCATATCATTGCATAATTACGCGTTTCTAATAGGTCAAACATGAATTTTTTGAGCAACACAACTCAATTTTGTACTGAATGGGGAACCATGAGTTTTTATTTTTAAACTAAATTATTTTGC</genome_strand>
        <mrna_strand>AAAATTCTCCAAGTACACTAGAGAGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG..........................................................................................................................................................................................................................................................................................................................................ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG.......................................................................................................ATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAA........................................................................................................GGACTGGCTGAATCCAGAACTCTTCAAGTGAGATGTCTACAGAGAGGATGACACAATTATCCTGTTGTTACCGCGTGTGATATTTGGTGTTTATCCCTCCCGCGTAGTTGCTGAGTTTATGAAGAAACAATCTAATGACTCTGAATTTGCAGACTGTTGAAGATTACCAATTACCTAATGGCTTTTGAATATTGTTAGAAGATAGGGTTCATATCATTGCATAATTACGCGTTTCTAATAGGTCAAACATGAATTTTTTGAGCAACACAACTCAATTTTGTACTGAATGGGGAACCATGAGTTTTTATTTTTAAACTAAATTATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0030C22-WwPK4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327310" ref_strand="+" ref_description="SGN-U327310        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to ABC1 family protein [Arabidopsis thaliana] (TAIR:At5g50330.1); similar to ABC transporter-like protein [Oryza sativa (japonica cultivar-group)] (GB:NP_915227.1); contains InterPro domain ABC1 protein (InterPro:IPR004147) | chr4:12786637-12789723 REVERSE | Aliases: None(evalue: 5e-85, score=311) genbank/nr: hypothetical(evalue: 5e-85, score=317)">
      <seq>acaaggagggtcctagtgatggaatatatagatggaaccccgattctgaagctaggagatgaaatggcaaagagaggcatcagtccagatggtaaaattgcagcggtagcaaggcagaacatacttaaaagtttgtccctagcttatggacaaatgatactcaggagtggtttctttcatgcagatcctcatccagggaatattctaatctgcaaaggtgctgaggttgcattgctggactatggacaagttaaggatcttccagaaaatctcaggcttggatatgctaaacttattcttgctattgctgatggcgatgctactagggccaaagaaagctttaaggagcttggcatagacaccctaagcaaatgtgaggatgagcagaaagaaatgcttaaattggcacaagggatgtttgacacaaaattaccacctggtgtaaagatgatgcaacctttttcggaagaatcttcagtcaaaaaaattgcagttgaggcttttccagaagaacttttctcgattcttcgaactctgcaaatactgagagggcttagtgttggtctgggaataagtcattcatgtgctgaacagtggagacctattgctgaggaagctttgtacaatgctggaagattgacagatatagatatgaagcgatcacacagacatagaaccagaagaaagtccggaaaataacatctaacgagtcaagagaagcaaagtatgaacgaaatcggagatagtcatgttgctaaatttttggagaaagagcaatggtttgcttttgtggcaaagcttttcaaggacaagtgaccacaaaaacactacatgctttgtatttttttttttctcttcctgtggccttgcaacaatttctgtacaacatggcctgtaattgaattgataattggcaaaacaggtaaaaagagatgcattttgatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-WwPK4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="29646" stop="21514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29346" g_stop="29231" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29230" i_stop="25053" i_length="4178">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25052" g_stop="24944" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="225" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24943" i_stop="24841" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.706" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24840" g_stop="24722" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="344" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24721" i_stop="24371" i_length="351">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.894" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24370" g_stop="24217" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="498" r_length="154" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24216" i_stop="22580" i_length="1637">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.300" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22579" g_stop="22435" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="643" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22434" i_stop="22114" i_length="321">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22113" g_stop="21815" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="945" r_length="302" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="946" polyA_stop="962"/>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-U327310" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>942</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29346" e_stop="29231"/>
          <exon e_start="25052" e_stop="24944"/>
          <exon e_start="24840" e_stop="24722"/>
          <exon e_start="24370" e_stop="24217"/>
          <exon e_start="22579" e_stop="22435"/>
          <exon e_start="22113" e_stop="21815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGAGGGTCCTAGTGATGGAATATATAGATGGAACCCCGATTCTGAAGCTAGGAGATGAAATGGCAAAGAGAGGCATCAGTCCAGATGGTAAAATTGCAGCGGTAGCAAGGCAGTAAGAACCTATATTTCTCAGAGTGAATTTGGCTTCTAAAATAATTTAGGTTACTGTCTCTGGTATATATATTATCTCTGTTAAATTAAACTGATAACATTGGCGATAGTGGAAGCAATATTTAACTTATGAATATTTATGCAAATAAAGATATGCGTTGAGTGAAACTAACACAATAATGTATGTAGAACCCGAAAACCTTGTTAAACACTTGAAAACACCAGATTAATTCAGGAAATCTGGCCTAAATTTTAGTTAAACCCCACAATCTCATGTATTGAAATGAATTACCTTGTGAAAATCAGGAGTTCTTCAAATAACAAAGGAAAATATATTCCTCTCTCAGTAATCTGAAAATGATCATCAAAGCACACTGAAGAATCCCTTTAGGGTGGCTATGAATCTGTATATTTGGGATCATTATAAAAGTATCAAGATTGTCTAGGATTGACACAGATTTTTGCTAGGTTGGCAGCAAAATTTCCTCATTTTGTGGCAGAGTGGCGCCAAGTTCAGCATTATTTTTTCTGCGTCGTGGTTAATGCAGATTTGCGCCAAGCACTGCACCTTGGCTCTAACTTTGGCTCCAGATCATCTTCCTACTTGGTCACAAGCACATTAAAAGTCTACAAGGCATCTCCAAGCCTTTTTAGCTCATTTTCCACACGCTCTTAACACAAAAAAACTGGTTTCCAAATTATTCCTAAGTTAAGTGGTGATTACGTCACAGTTCACACTTATCTCATGAAAGATTCCATTTTACCCCTGTACTGACTTGTTTGAGATGAGATTCTTTGACATCTTCCTTCTAAACCAGAAGAAGTTTTGACGATGACTCACCACATACCTTTTGAAGAAAATAAAGTATATTAGCAAATGCTACATAGCTTGAGATGTTGGTTGTATAAAAACGTTCCAGCACACAAACTTGCTTGACCTTTCGAAATTCTCTGCCTTTTGCCATGTAAACTGAAGGAGTTGGTTTTGTCCCTGTGGGGTCAAATCAATGGATGAAAATTCCATGTGCCAATTTACTTGGCTATAAATTGACAAGATTCAAGATGAATTAATGTGAAGATTTTGTATGAAGATAATTCTTCATTGGTACAAAATAAAAGGTCAAGATAGTAATTTTGTAGGTGAAATTTAGGTAAACCATAAAATGGTTACACATAGTAAACCTTGACATTTTGACACATAGTGATGTCATGGATGACATCAATAAAAAGAATTAATTTCTATAAATAGGAAGCTCTTAATTCATTTGTAAGACGCCTTTGACTTGTCTTTTCATCTTCCAAGACATTTGATGTTGTTTCTCTCTTGTAATATTTCACTTGTATTCTTTTTAAGTGAAACAAATACTGGTGCAGTTGTTATCCGGTGGACGTAGGATCATTCTGATCCGAACCACGTTAAATATTGTTATGCTTCCTTGTTTTTTATTTTCACATTTCCGCTAACAATTTGCATCAGAGCCAAGGATCTATTTGTGTATACTCTGTGCTTTCAACACAATTTGAACTTCCACATCAAAAAAGAATTACTTTGTTTTTCTGTATTTTCAAATACTTCGTAGTAGAAGAAGAACAAGTAACAATGAGTTCCATGAAGTTTGAAATTTATAGATTTAATGGGCGCAACTACTTCAATATTTGGATGATCCAGATGATGACGTTACTGCGGAGGAAAGGTTCAATCCATGCTATTGACGAAAAGTACCCCAATAATACATCGAATCTCGACAAGAAAAAGATTGAAGGAGATGCATCAAGTGTAATCCAACTGTCCCTTTCACCTAATGTGCTCTGTGAAGTGAGCACAAGTACTAAGGAGACGGTTTAACAGTTGTGGGAAAGGCTGAAAGGGCAACCGTTTGGTGACAACAAGGATGTTGCTATAATGGTGTCTTCACACATTTAAGATGGAGTTAGGTACTTTGTTGCAGGACCATCTCGACGCGTTCAATAAACTTGTGATGGACTTAAAGACTGCTGGAATTTAAAAAGGAAGAGGAGACGCTTGCATATGCTTTGCTATTTTCATTGACTTCAAAATATCGTGATTTGAAAATTCATTTCCTATCACTCTTTGAGCAATTGCGACAAGTACTTAACTCTTGGGGCGGTTACAAGAAGAGGCATTTTGAACGAGATTGTCTTATGTCAAAGTCCAAAGAAAAGGCGAGTGCATCTACTATTGAGCGGCTACATGATTCCGATGATGATTATGTACTAAGAATATTATCCAATAGTGGAGTCTATGACAATAGATGTATGTTAGATTCTGGTTGTACTCTGCATATGATATTCCGAAGAGATTGGTCCAGCGACTATGAAACAAATGGAGGAACCATAACAATGGGCAATAGTGTAACTTGTAAAAGAATTGACATTGGTTCAATTTGGGTTTGCTGCCTTGATGGAATCATGAGGACTATTATAAAAGTCTGTCATGTTCTTGATCTGAAGAACCTCGGGTGCTTTGGATGAACAAGGCTACAAGTACATGAGCAAAGGGAACTCTGAAAGTGACTAAAGGGTCTTTAGTCATGTTGAAGGCCAAGTTGGAGGATGACCTCTACACAATAGAAGAAAGCACCCTTGTGCAGTTATCTTATGATGTTAAAGAAAATTTATGGCTCATGAGACTAGGTCATGTAAGTGTACAAGGACTGGAGATATTGAGCAACTACAACCTTTTGAATGGTGAGAAGATCAACACACTTGAATTTTGTGGGCTCTGCGTCTTAAGGAAGCAGATGTAGGTCAACAACCCTATAAATCTGAATAGATGTAGTCTAGCACCCCTCCCATCTTGTGCTTGCTAGTGTTGGCCACAAATAGCCCACTAGCTTTGTCACATTTGTCTCCTTCAAAATGTCTCCGCACATCACAAGAATTAAGTGGTTACCGCACTTGCTCAAGAGTGATAGGCTCCTTGCTATACATCATTGAATTCTCAATATCATGATATTTGGAAGTCTATGAAAATAGAAAAGAACATGCATGTGTCTCCTCATCCTTGTTAATTTCAGCAGTCTGAAAGTCTATCACAAGTTTATTGAACGAATCTATTTGAACCTGCAAAAAAGTACCTAAATCCATCTTAAATGTGTGAAGACACCGTTGTAACAACATCCTTGTTGTCATTGACCCATCTTGGTAAAGGCCTTCCAACCTTTCTCATAATTATTTGACGGTCTCCTCGGTACTTATCCTCACTTCACAAAGCAATTTAGGTGCAAGGGATAGTTGAATTACACTCAATGCATCTTCTTCTTGTTGGAATTCGATGTGTTATCGGGGTACTTACCGTCAATAGCAGTGATTGAACCTTTCCTCCTAATAACGCCATCATCTGGATCTTCTAGATGTTGAAGTTGTTGCATCTCACTAAATCTATCAATTTCAAACTTTATGGAACTCACCTTACTTGTTCGTCCTCTTCTAATACAAAGTATTTGGAAATACAGAAAACCAAAGTAAAGAAATGTGGGAGTTCATATTATGTTGCAACCCCTTGGCTCTGATACCAATTATTAACGAAAACGTAAAAATAAAGAACAAGGAAGAACAACTATATTTAACGTGGTTCGGATCAGAATGATCCTATATCCACTGGAGAACAACTGGAGAACAACTGTACTTATATTTATTTCACTCCAAAACATTACAAGTGAAATATCACAAGAGAGTAAGAAGATAAAGTGCCGTAGAAGATGAGAAGGCAAGTGAGAGTTGTCTTACAACTGAATTAAGAGCTACTTATTTATAGGAATGAATTCTTCTTATTGATGTCATCCATGACATCAGAACGTGTCAAAATGTCAAGGTTTAATATGTGGAACCAATTTATGGGTTACTTAAATGTCACCTACCAAGTTACTATCTTGAACTTTTATTTTGTACTAATAAAAAATTATTTTTTAACAGTACTTCACATTAATTCATCTTGAATCTTGTCAATTCCTAGTAAATTAAATTGACACATGGAATTTTCTTCCATTGGGTTTGACCCCACAAGGACCAACCAACTCTTTCAATCTCCACTGTTATCTACTATTTATAAAGTTAGTAGTTTCTAATTGTTCGAAGGATCATTTCAACCTGATTCTGTTTCATTGAGAATATGGTAAACTGGGGTACTATTCTCTTATTTGTTACTTCTACATGCAGGAACATACTTAAAAGTTTGTCCCTAGCTTATGGACAAATGATACTCAGGAGTGGTTTCTTTCATGCAGATCCTCATCCAGGGAATATTCTAATCTGCAAAGGTGCTGAGGTTAGTATGCATCTTTTCGTTTTCTTCTTTCAATTAGGTTATCACATATAATTGTTCTTGTTTAGCTTTCTGACAAGGATCGCGGCATTCTTCTCTTATTAAGGTTGCATTGCTGGACTATGGACAAGTTAAGGATCTTCCAGAAAATCTCAGGCTTGGATATGCTAAACTTATTCTTGCTATTGCTGATGGCAATGCTACTACGGCCAAAGAAAGCTTTAAGTGAGAAACTTTTCAATGAATCTCTTGTTATAATTTCAAGAATAGTTTTCTTCCTGACGAAGCAACATGATGCAAAATACTAATGGGAGATCTCAAAAGCTTGAAATCACAAATGTTCTTCCAAAAAATAAACAGAAAAGGAAGTAGTAGTAGTTTACGTATTAGTTATTCAAGTGTGAAGAATGGAAACTGGAGTTGACTTTTTGGAGCGAAACCAACTACTCTTGGCACTAATAACAGAGATGGAAATGATTTTTTTAACTCTATTACGGAGTTAATGTTATTGCAATAATTACATTCTTTTAGTACTGATATGTTTCCAATCTTTGAACTTCTCACTTTGAATTAAAGGGAGCTTGGCATAGATACCCTAAGCAAATGTGAGGATGAGCAGAAAGAAATGCTTAAATTGGCACAAGGGATGTTTGACACAAAATTACCACCTGGTGTAAAGATGATGCAACCTTTCTCAGAAGAATCTTCAGTCAAAAAAATTGCAGTTGAGGTATGCGGTACCTGCTCTCTCAACTTATGGTATTTACCAGTTCCCAATGTTAATCATTTTAGAAAGGGTTGCATTTACCATTCAAGAATCTAAGGATCTTTTCCACATGATACTACCTTCCCCATTGAGGTCTATCAGTTTGATTAGTGATGGATATTGAAGACAAGAGTTGACGCAGTTGTATTTTGATAACCCTGACTAAAGAATTTGAAATTTTATCAGTCGTCATGTCTTTGTTGATGCTTTGGTAATAAGGAACTATAGAATTAGTGAAGAGAGTACAGAGAAGAGTTTATCTTTTATGAAAGTGATCATAATTTTGGGACACTGCAAAAGGAGTTTCTTTCCATTTAAAGTTAATAACTTGCTTAGGATGGCATTGGGAGGATGAATTGATTTGAGAAGTAAATCTTTAGCAGAACAATATTCATTGCTGAACTCTATCTATACATAATTACCTCAAATTCCTATTTATTTGGAGCTTCGACTCAAAAGCATGGACATCTCAGAAAAAAATTACGTGGGGTCAAACAATCTTCTGATGGGAAGTTATAATAAATTCTATGCATTTTGTTATAAGGACATATATATTGAAAAAATGAGCTGTTTGGTTCAAGTATTGGTTGGAGGATATTGTGATCAATAGAGATAGAAGGCCACATAGTTTGTGGTCATGCAAATAAACTTAGCAGACTGCCGATCTATAGCCACAATAGACTGATCTGTATCCCTGGGCTATGTTGCTCGGACTCTTAAAAAATTATATCAGGTGCATGTCGGATCCTCCAACAATAGTGTATTTTAGAGGATCTTACACGGGTGCGGCAACATTTTTGAAGAGTCCGAACAACATAGTCCCTACGTCTTTCAGCCAACTAAATCAATATAGTGACTACTTTCACATTTTGCACCTGTGCTTAAAATGCAACTACACAAATCATTATACTAGACGAATTCTTATAAGCTTCTAGAACAAATTCTGCGGAAAGGAAACTAAAATATTGAAATTGAAGCCATGGCCATTTGACAAGTACTTACAAGTACCATGATTAAGCTTACACTTTGATTACTATACATACACTAGACATGCTACTAATCTGGTATTCCTCAATCTTTATGATAATGGAGAAATGTTTAGCCAAGAATCATGAAAGAGAGGAACTTTTTGACATCGTTCAGCAAAGGCTGAGTAAGTTTTTATTGTTTCCATTAGAAATGTTGTCTCTTAAATGATTGTGGTGCTCTATAAAAAAGAAAAGAGAAAGGCCACATCATGTCGAAATTGGAAGTCTTTCACTTAAGATGCAAATGCAATAATGTCCAACCGTCATGAAAATGACTCTGGATCATTCTGAATTTCAGTCTCTTAAAAATTTGTGAAAATTCAGCTCAATTAGGTCCCATATAATCTGGATTTTAGCTTCTGTGACTTAAAAGTGGTCTGTTTTGTTCTCTTGCATTATGCTCCGCAAATGATAAGGTGGATCTTGTACCTTCTTAAGTTCTTTGTATCACTTAGTACAGTGAATGACGCCTTGTATCACCGGCCTTTCTTATTTGCTGATTAATTTTGTTAAATGTACTTGGTGACATGAGTACTAAGGTCAAAATGTGAACACAATTCTATTTGATGTTAGGCTTTTCCAGAAGAACTTTTCTCGATTCTTCGAACTCTGCAAATACTGAGAGGGCTTAGTGTTGGTCTGGGAATAAGTCATTCATGTGCTGAACAGTGGAGACCTATTGCTGAGGAAGCTTTGTATAATGCTGGAAGATTGACAGGTTAGTCCCTAATACGACAATGCATTTTTTTGTTCAACTAAACAAGTCAATCTATTGCCAAGCAAGAACATATCGTCTTCATTTTCATGCCACATTAATGTTATTTAGTCATTTCTTCTGTTACTGACTGAAATGGAGTATGTAGTGATACACAGATGAGTATTCGAATACTATAATCACTACAGTTACTAGGCCCATTCTTGTTTGATGATTCATTAGGATCTATACAGCTCTAACAATGAGCCATAGCCATTATACATCTTATTCATTTCCTGGTTTAAGATCTAACAATGATATGCAATTGTTACTTTTTTGTTTCAGATATAGATATGAAGCGATCACATAGACATAGAACCAGAAGAAAGTCCGGAAAATAACATCTAGCGAGTCAAGAGGAGCAAAGTATGAACGAAATCGGAGATGGTCATATTGCTAAATTTTTGGAGAAAGAGCAATGGTTTGCTTTTGTAGCAAAGCTTTTCAAGGACAAGTGACCACAAAAACACTACATTGCTTTGTA----TTTTTTTCTCTTCCTGTGGCCTTGCAACAATTTCTGTACAACATGGCCTGTAATTGAATTGATAATTGGCAAAACAGGTAAAAAGAGATGCATTTTGATC</genome_strand>
        <mrna_strand>ACAAGGAGGGTCCTAGTGATGGAATATATAGATGGAACCCCGATTCTGAAGCTAGGAGATGAAATGGCAAAGAGAGGCATCAGTCCAGATGGTAAAATTGCAGCGGTAGCAAGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACATACTTAAAAGTTTGTCCCTAGCTTATGGACAAATGATACTCAGGAGTGGTTTCTTTCATGCAGATCCTCATCCAGGGAATATTCTAATCTGCAAAGGTGCTGAG.......................................................................................................GTTGCATTGCTGGACTATGGACAAGTTAAGGATCTTCCAGAAAATCTCAGGCTTGGATATGCTAAACTTATTCTTGCTATTGCTGATGGCGATGCTACTAGGGCCAAAGAAAGCTTTAA...............................................................................................................................................................................................................................................................................................................................................................GGAGCTTGGCATAGACACCCTAAGCAAATGTGAGGATGAGCAGAAAGAAATGCTTAAATTGGCACAAGGGATGTTTGACACAAAATTACCACCTGGTGTAAAGATGATGCAACCTTTTTCGGAAGAATCTTCAGTCAAAAAAATTGCAGTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTCCAGAAGAACTTTTCTCGATTCTTCGAACTCTGCAAATACTGAGAGGGCTTAGTGTTGGTCTGGGAATAAGTCATTCATGTGCTGAACAGTGGAGACCTATTGCTGAGGAAGCTTTGTACAATGCTGGAAGATTGACAG.................................................................................................................................................................................................................................................................................................................................ATATAGATATGAAGCGATCACACAGACATAGAACCAGAAGAAAGTCCGGAAAATAACATCTAACGAGTCAAGAGAAGCAAAGTATGAACGAAATCGGAGATAGTCATGTTGCTAAATTTTTGGAGAAAGAGCAATGGTTTGCTTTTGTGGCAAAGCTTTTCAAGGACAAGTGACCACAAAAACACTACA-TGCTTTGTATTTTTTTTTTTCTCTTCCTGTGGCCTTGCAACAATTTCTGTACAACATGGCCTGTAATTGAATTGATAATTGGCAAAACAGGTAAAAAGAGATGCATTTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0030C22-WwPK4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338457" ref_strand="+" ref_description="SGN-U338457        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | ABC1 family protein, contains Pfam domain, PF03109: ABC1 family | chr5:20502452-20505789 REVERSE | Aliases: MXI22.4, MXI22_4(evalue: 9e-14, score=74.7) genbank/nr: ABC1-like(evalue: 2e-12, score=76.6)">
      <seq>cgtccaaccgtcgtgaaaatgactctggatcattctgaatttcagtctcttaaaaatttgtgaaaattcagctcaattaggtcccatataatctggattttagcttctgtgacttaaaagtggtctgttttgttctcttgcattatgctccacaaatgataaggtggatcttgtaccttcttaagttctttgcatcacttagtacagtgaatgacgccttgtatcaccggcctttcttatttgctgattaattttgttaaatgtacttggtgacatgagtactaaggtcaaaatgtgaacacaattctatttgatgttaggcttttccagaagaacttttctcgattcttcgaactctgcaaatactgagagggcttagtgttggtctgggaataagtcattcatgtgctgaacagtggagacctattgctgaggaagctttgtacaatgctggaagattgacagatatagatatgaagcgatcacacagacatagaaccagaagaaagtccggaaaataacatctaacgagtcaagagaagcaaagtatgaacgaaatcggagatagtcatgttgctaaatttttggagaaagagcaatggtttgcttttgtggcaaagcttttcaaggacgagtgaccacaaaaacactacatgctttgtatttttttttttctcttcctgtggccttgcaacaatttctgtacaacatggcctgtaattgaattgataattggcaaaacaggtaaagagagatgcattttgatcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-WwPK4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="23198" stop="21514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22899" g_stop="22435" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22434" i_stop="22114" i_length="321">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22113" g_stop="21815" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="767" r_length="302" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="768" polyA_stop="779"/>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-U338457" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22899" e_stop="22435"/>
          <exon e_start="22113" e_stop="21815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCAACCGTCATGAAAATGACTCTGGATCATTCTGAATTTCAGTCTCTTAAAAATTTGTGAAAATTCAGCTCAATTAGGTCCCATATAATCTGGATTTTAGCTTCTGTGACTTAAAAGTGGTCTGTTTTGTTCTCTTGCATTATGCTCCGCAAATGATAAGGTGGATCTTGTACCTTCTTAAGTTCTTTGTATCACTTAGTACAGTGAATGACGCCTTGTATCACCGGCCTTTCTTATTTGCTGATTAATTTTGTTAAATGTACTTGGTGACATGAGTACTAAGGTCAAAATGTGAACACAATTCTATTTGATGTTAGGCTTTTCCAGAAGAACTTTTCTCGATTCTTCGAACTCTGCAAATACTGAGAGGGCTTAGTGTTGGTCTGGGAATAAGTCATTCATGTGCTGAACAGTGGAGACCTATTGCTGAGGAAGCTTTGTATAATGCTGGAAGATTGACAGGTTAGTCCCTAATACGACAATGCATTTTTTTGTTCAACTAAACAAGTCAATCTATTGCCAAGCAAGAACATATCGTCTTCATTTTCATGCCACATTAATGTTATTTAGTCATTTCTTCTGTTACTGACTGAAATGGAGTATGTAGTGATACACAGATGAGTATTCGAATACTATAATCACTACAGTTACTAGGCCCATTCTTGTTTGATGATTCATTAGGATCTATACAGCTCTAACAATGAGCCATAGCCATTATACATCTTATTCATTTCCTGGTTTAAGATCTAACAATGATATGCAATTGTTACTTTTTTGTTTCAGATATAGATATGAAGCGATCACATAGACATAGAACCAGAAGAAAGTCCGGAAAATAACATCTAGCGAGTCAAGAGGAGCAAAGTATGAACGAAATCGGAGATGGTCATATTGCTAAATTTTTGGAGAAAGAGCAATGGTTTGCTTTTGTAGCAAAGCTTTTCAAGGACAAGTGACCACAAAAACACTACATTGCTTTGTA----TTTTTTTCTCTTCCTGTGGCCTTGCAACAATTTCTGTACAACATGGCCTGTAATTGAATTGATAATTGGCAAAACAGGTAAAAAGAGATGCATTTTGATC</genome_strand>
        <mrna_strand>CGTCCAACCGTCGTGAAAATGACTCTGGATCATTCTGAATTTCAGTCTCTTAAAAATTTGTGAAAATTCAGCTCAATTAGGTCCCATATAATCTGGATTTTAGCTTCTGTGACTTAAAAGTGGTCTGTTTTGTTCTCTTGCATTATGCTCCACAAATGATAAGGTGGATCTTGTACCTTCTTAAGTTCTTTGCATCACTTAGTACAGTGAATGACGCCTTGTATCACCGGCCTTTCTTATTTGCTGATTAATTTTGTTAAATGTACTTGGTGACATGAGTACTAAGGTCAAAATGTGAACACAATTCTATTTGATGTTAGGCTTTTCCAGAAGAACTTTTCTCGATTCTTCGAACTCTGCAAATACTGAGAGGGCTTAGTGTTGGTCTGGGAATAAGTCATTCATGTGCTGAACAGTGGAGACCTATTGCTGAGGAAGCTTTGTACAATGCTGGAAGATTGACAG.................................................................................................................................................................................................................................................................................................................................ATATAGATATGAAGCGATCACACAGACATAGAACCAGAAGAAAGTCCGGAAAATAACATCTAACGAGTCAAGAGAAGCAAAGTATGAACGAAATCGGAGATAGTCATGTTGCTAAATTTTTGGAGAAAGAGCAATGGTTTGCTTTTGTGGCAAAGCTTTTCAAGGACGAGTGACCACAAAAACACTACA-TGCTTTGTATTTTTTTTTTTCTCTTCCTGTGGCCTTGCAACAATTTCTGTACAACATGGCCTGTAATTGAATTGATAATTGGCAAAACAGGTAAAGAGAGATGCATTTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0030C22-WwPK4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329887" ref_strand="+" ref_description="SGN-U329887        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to ABC1 family protein [Arabidopsis thaliana] (TAIR:At5g50330.1); similar to ABC transporter-like protein [Oryza sativa (japonica cultivar-group)] (GB:NP_915227.1); contains InterPro domain ABC1 protein (InterPro:IPR004147) | chr4:12786637-12789723 REVERSE | Aliases: None(evalue: 8e-72, score=266) genbank/nr: unknown(evalue: 6e-70, score=266)">
      <seq>aagaaaatcattactccttacaagttacaaatatttgagcaaccccattcaacaaattttaagaatagatattccagtaattttttccagccacaagaaaaaaaaaagagagtataatgggtgaatggctatcaatgccccttcaaatttcttgcaaaattgagctatggaggctgtctaaagaaaatataaggtgtaaaaatggcgtctttaaccttattgaggctacgatagagtttacagagaaacaatgagtgttcaatctgattttcaagaaaaggtatctgcttgtttcagaccttggcaacgttctttccagttttgggttcgtgcagtagatatatatactggttataaggtgtttcaattaagagttggatttgaaaaggatgtgcaaaaacaagaagcaatgtgggagaggcagcatgaggttgcagctgagaagatatataatatgtgctctgaccttggtgggttcttcctaaaggttgctcaactaattgggaaaccggacttggcccctgctgcatgggtgagaaggttagttactctatgtgatcaagcgcctgctacaccgtacaatgtggtcagggctgtgctggagaaggaattaaatcagaatgttgatgaattgtttgaaagttttgatttcgatcctctcggttctgcttctattgcacaggttcacagagcgagactcataggtgacaaaagagatgttgttgtcaaggtacaacaccctgnggtccaacagctgatgatgaccgatatccacaatttgcaagcttttgcactatacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-WwPK4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="35225" stop="31137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34925" g_stop="34568" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34567" i_stop="33926" i_length="642">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33925" g_stop="33797" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="487" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33796" i_stop="33029" i_length="768">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33028" g_stop="32834" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="682" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32833" i_stop="31628" i_length="1206">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31627" g_stop="31580" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="730" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31579" i_stop="31509" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31508" g_stop="31437" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="802" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-U329887" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34925" e_stop="34568"/>
          <exon e_start="33925" e_stop="33797"/>
          <exon e_start="33028" e_stop="32834"/>
          <exon e_start="31627" e_stop="31580"/>
          <exon e_start="31508" e_stop="31437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAATCATTACTCCTTACAAGTTACAAATATTTGAGCAACCCCATTCAACAAATTTTAAGAATAGATATTCCAGTAATTTTTTCCAGCCACAAGAAAAAAAAAAGAGAGTATAATGGGTGAATGGCTATCAATGCCCCTTCAAATTTCTTGCAAAATTGAGCTATGGAGGCTGTCTAAAGAAAATATAAGGTGTAAAAATGGTGTCTTTAACCTTATTGAGGCTACGATAGAGTTTACAGAGAAACAATGAGTGTTCAATCTGATTTTCAAGAAAAGGTATCTGCTTGTTTCAGACCTTGGCAACGTTCTTTCCAGTTTTGGGTTCGTGCAGTAGATATATATACTGGTTATAAGGTACCCTTTTTCATTTTTTTTTTCTCAAGTTTTGATTTTGTTAGTGGAACTGATTCATTTTTAATGTGATATCTTATCTTATCCCATTTTTCCCAAATATTAGTGAACAGTGGCACTGAATTGAGTTCTATTTTCTCATTTCCATTTTCCCATATTAATTTAACTTTTGAGGATGCACATCTACATACGTCAACTCGTGTCCATTGTATCAGTTGAGCAATCACAATTACAAGATAATCATCCAGACACTTGTAAAATTTTGTGGCATGTTAGTGTCGGATATCCATGGGACACAGGAGAGATGAGTTGATAGTTGAAACCAAAGTTGAGGTGTCTAGATATGTTCATTTGTCAACCAAGGTCAAGTTTAAGTGTTTGTTTATGTATTATGCCTAAATTTTTTTATAATTTGAAGAATTTAGGATATATATACAAAATGATTTTAAATTCTACAAATTAGTTGGTCTAATTTTACAGTTGTTACCTCTATGATTAATGTAGAAGAGTGAATTTGGGAATGGAGTGTTTTTCTTAAAATCTGTTTTTTTTTTTTGTTAATTTCTCTTTGTAATATGAATGAAGCATTTGTTGGTTCATTTGGCTCATTGAAGTAAGTTTTGGGTTTTAATTGCTCTTTTAAAGGTGTTTCAATTAAGAGTTGGATTTGAAAAGGATGTGCAAAAACAAGAAGCAATGTGGGAGAGGCAGCATGAGGTTGCAGCTGAGAAGATATATAATATGTGCTCTGACCTTGGTGGGTTCTTCCTAAAGGTATACTCTGTAACCAGCTTCCCATTTTCCGTTTCCTAATATAGAATTGATTCAAATCTCAAACCATTATCGTTGACTCGTTGTTTATTACAACTTCAAGTGGAGTGTGAAGAGGGTAGGATGTAGGCAGACCTTATCCCTTCGTTTTAGGTTTGTTTCCGATAGAGCCTTAATTCAAAAGGAAGTAATCAGAAAGCGTAAAAGAAAGAAATAGAATTCATGGTAGCTACGACCCAAACAAGCTGTTAAGTGTTAATGGTCCTTTGTTGTTTATTAACTCTACAAGGAAAAAGATTTCTGCATTTAGTGTTCCCTTTTAATAAATTTAATTAAGTTTATGCAGTTATATTGGGATATGTGCACTAGTCTGTGCTGGCTGCAGCATGCACTGCTGTGCTCTATTCATCATTATGCTCATGAGATTGTTGTATTGCTTCCACGTTACAGAGTTCCCTGAGGGTTGCTTCCATATTTTAACCCCAGGGATTTGGTCTAGTGGTAAGAGGTGTGGCGGACCCGTGATGTGTGATTTAGGTGCACGTCATGGGTACCCTGTTGCAAGCAATTCCTGGTATGTAAATGGAAAGGGGTAGAGGGGAGGACTCATAATCCACTGAGTTTCGAACCATGGACCATTAGCTCTTGGGAATTTCTCTGTTATTAGATAAAAGAATGGTCAAGAGGGTTTATATTTGGGCTTCACAACTCATAATTCATCTTAAGATCTAATTATGTGGATGGTGATGGTAATATTATTATTAATATTAGGTTGCTCAACTAATTGGGAAACCGGACTTGGCCCCTGCTGCATGGGTGAGAAGGTTAGTTACTCTATGTGATCAAGCGCCTGCTACACCGTACAATGTGGTCAGGGCTGTGCTGGAGAAGGAATTAAATCAGAATGTTGATGAATTGTTTGAAAGTTTTGATTTCGATCCTCTCGGTTCTGCTTCTATTGCACAGGTAACTGTTAAGCTTGATTTAAAGCATTACTAAAGCTCATTTTAGAGCGACAAAAATTTCTTCAAGCATTGACTAGAAACTTCATGTTAATCAAACAGTTGTTAAAAATATTGACCTTGCAGATAGTAAATACATTTAGATTTGTTGAAGTGTGTGACTATCATATCTAAAAGTCTAAGTTATTACAGGGGTGACACATTTATTTAGTATGTTAGGTTGCAAATTTTTCACTCGAATTAGGACCAACTCTTTTTTCTTGGGCTTTTACCTGGAAGTTAATTTCCACTAATAGGTTGTGGAACACAGTAGGCACGTAATAGACACAACAGCACCCTAATTCCAGCAATAATAGCAAAAACATTGCCACTTACATGTTAGGCAAGGGAAACTGCCTAAGAAGATACACCAAACAAGTTTTTCAATCTTTGCTGTGGCTGATATATTATAATGTCTAACAATCTCTAGTATATTCTTAATTTTTATGGTTTATGTAGGGCCTTAGCCCTATCCCAACAACAACAGTAGCTTTTGTTTGCAATGAAGAATATATATTTCAAAAGGATTTTTTTGTATATTTTACATTTTGCATTGTATGGAAATGTGGCTCCTTTCATGAGTCCTTTTTGTTAAATGCAAAATTTGTTCATAGCTAACATGCAAGTGACGACAAGTACATCCATGATCATGACTCATGATGATGAAGATGTGAAATATACCAATAAAAAAATGAATAATGAGCCATTTTCAAATCTTTATATAGGTATAACATGCCACAAAATATATGCTAGAACTTCTTTTCAACAAGTAGACTGTGCACTGATACTTTCTTTCTTTTCCTAGTTAGCTGATTTCCTTAATCAAGTTTTGTTGTTCTTGCTCCTTCTAACAAGATGGAGGTTTATTTGATCTGAGGAAACTTTCAGCTGAAATAGTTTCTTAGGACATCGTCTAGCACTAAGCTTTGTGTATATCTGTTCACAAATGAATAAATATTCATTTTCTATTGTTCTCCTTACTTCTCAACAGCTTTAACCTTAAAACAGTGTGATACATGGCTTTGAAGGCCAAACCTGTTAGGCAGTTTAAAGTCAGATAAATAATTATTTCTAAATGTCATATCTTTGAGCTGTATTCTAGTTATACAGAGGAATTAATATTACTTTGATCCTAAGTGGTTCAACTTGTGTTTACTTTACTTGGAATTAGGTTCACAGAGCGAGACTCATAGGTGACAAAAGAGATGTTGTTGTCAAGGTAAGAAAAATTGACTCATAACTTTGCAGATTGTTGTGATCATAAGGTTCTAAAGTAGTTGTCTTCTCTAGGTACAACACCCTGGGGTCCAACAGCTGATGATGACCGATATCCACAATTTGCAAGCTTTTGCACTATACTTG</genome_strand>
        <mrna_strand>AAGAAAATCATTACTCCTTACAAGTTACAAATATTTGAGCAACCCCATTCAACAAATTTTAAGAATAGATATTCCAGTAATTTTTTCCAGCCACAAGAAAAAAAAAAGAGAGTATAATGGGTGAATGGCTATCAATGCCCCTTCAAATTTCTTGCAAAATTGAGCTATGGAGGCTGTCTAAAGAAAATATAAGGTGTAAAAATGGCGTCTTTAACCTTATTGAGGCTACGATAGAGTTTACAGAGAAACAATGAGTGTTCAATCTGATTTTCAAGAAAAGGTATCTGCTTGTTTCAGACCTTGGCAACGTTCTTTCCAGTTTTGGGTTCGTGCAGTAGATATATATACTGGTTATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTCAATTAAGAGTTGGATTTGAAAAGGATGTGCAAAAACAAGAAGCAATGTGGGAGAGGCAGCATGAGGTTGCAGCTGAGAAGATATATAATATGTGCTCTGACCTTGGTGGGTTCTTCCTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTCAACTAATTGGGAAACCGGACTTGGCCCCTGCTGCATGGGTGAGAAGGTTAGTTACTCTATGTGATCAAGCGCCTGCTACACCGTACAATGTGGTCAGGGCTGTGCTGGAGAAGGAATTAAATCAGAATGTTGATGAATTGTTTGAAAGTTTTGATTTCGATCCTCTCGGTTCTGCTTCTATTGCACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACAGAGCGAGACTCATAGGTGACAAAAGAGATGTTGTTGTCAAG.......................................................................GTACAACACCCTGNGGTCCAACAGCTGATGATGACCGATATCCACAATTTGCAAGCTTTTGCACTATACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0030C22-WwPK4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331960" ref_strand="+" ref_description="SGN-U331960        Tomato 200607 #1 [2 ESTs aligned] genbank/nr: gi|47824994|gb|AAT38766.1| putative polyprotein [Solanum demissum] (evalue: 5e-40, score=165)">
      <seq>gatagtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgtgattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcgcgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataattgtggcaaggctggtcatagatcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-WwPK4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="+" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="41491" stop="42484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41791" g_stop="42184" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="+" ref_id="SGN-U331960" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41791" e_stop="42184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTAAAACTGTTGGGTCACAAGTGCAGGAACTTCAACTTATTCTCGATGATCTGATTGCTGAAGATATGGTAGTAAATG-AGCTTTTGAAGTGGCTGCAATGATCTAGAAGTTGCCTCCTTCGTGAAATGATTTCAACAATTATCTAAAGCACAAGCATAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAATTCAACAATCATTAGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCTAACGGGCAAAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATTTTCTGA</genome_strand>
        <mrna_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGTGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0030C22-WwPK4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335086" ref_strand="+" ref_description="SGN-U335086        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | 26S proteasome regulatory subunit, putative (RPN7), contains similarity to ubiquitin activating enzyme GI:3647283 from (Lycopersicon esculentum) | chr4:12790173-12792732 REVERSE | Aliases: F6I7.30, F6I7_30(evalue: 9e-16, score=81.6) genbank/nr: gi|32700030|gb|AAP86665.1| 26S proteasome subunit RPN7 [Arabidopsis thaliana] >gi|23397029|gb|AAN31800.1| putative proteasome regulatory subunit [Arabidopsis thaliana] >gi|20259842|gb|AAM13268.1| putative proteasome regulatory subunit [Arabidopsis thaliana] >gi|15450840|gb|AAK96691.1| putative proteasome regulatory subunit [Arabidopsis thaliana] >gi|21593433|gb|AAM65400.1| putative proteasome regulatory subunit [Arabidopsis thaliana] >gi|18416433|ref|NP_567709.1| 26S proteasome regulatory subunit, putative (RPN7) [Arabidopsis thaliana] >gi|42573029|ref|NP_974611.1| 26S proteasome regulatory subunit, putative (RPN7) [Arabidopsis thaliana] >gi|20978551|sp|Q93Y35|PSD6_ARATH Probable 26S proteasome non-ATPase regulatory subunit 6 (evalue: 7e-14, score=81.6)">
      <seq>attgataaagtagcaggagtattggaaactaatcgtcnnnncgcaaagaatgctctttatcaggcaactatcaagcaaggggacttcttgttgaatcgcattcaaaagctttctcgtgtcattgatctctgaagccgttaaaccgtgcgttatacttgttttctcttcaactctctgtagctctaatattgatatattctgccttttcatattgaactcttgggggagtattattttagtaattttctgaaatcaaagagattttctgtgttgggatgaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-WwPK4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="62586" stop="61710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62286" g_stop="62012" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="279" polyA_stop="292"/>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-U335086" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62286" e_stop="62012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGATTTTCTGTGTTGGG</genome_strand>
        <mrna_strand>ATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCNNNNCGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGATTTTCTGTGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0030C22-WwPK4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346798" ref_strand="+" ref_description="SGN-U346798        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 1e-36, score=149) genbank/nr: gi|37530894|ref|NP_919749.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)] gi|18642681|gb|AAK02020.2| Putative gag-pol polyprotein [Oryza sativa] gi|31430072|gb|AAP52036.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)](evalue: 3e-43, score=178)">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-WwPK4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="+" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="70936" stop="72021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71236" g_stop="71721" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="+" ref_id="SGN-U346798" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71236" e_stop="71721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCACAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCATTTTGGGTCCTTCCCAGCCACCCCTAAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAATCCAAAACCTTTTAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGACTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCTTGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGACAGTATTTCCAGGTACAAGACTCGTTTGGTTGCTAAAGGCTACAATTAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0030C22-WwPK4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344877" ref_strand="+" ref_description="SGN-U344877        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-36, score=149) genbank/nr: retrotransposon(evalue: 5e-50, score=201)">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-WwPK4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="+" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="71362" stop="72255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71662" g_stop="71955" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="+" ref_id="SGN-U344877" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71662" e_stop="71955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGGCTACAATTAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCTTGTTATTCGGCAGAAAACCATTCGCCTGGTACTGTCACTTGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAAC--TAT-C-T-A-G-AACCACCGAGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCTAGCAAGCCCCCCGTGCTTGATACACACGTTTGAAAATATT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0030C22-WwPK4/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325948" ref_strand="+" ref_description="SGN-U325948        Tomato 200607 #1 [4 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-32, score=21.6)">
      <seq>gagatataactgacatatcaaaaactggaatccaggaaacttctcattgtgatagcaccaatcaaacatgccaaactgtaatttcaggtagacacaacctttactcctacaataaaacgtttgattaagcagtgctgtatcgatcatgtctactaatcaagatttgagaatttcaggctcaatgatctttggagataataagagcctggactctgtagacatccatgagtgtcattcacatgctcatccaccccacaaggaggaaccacatcattctgttggacatggctgttcggacaaggaacacgatcattcacatccagagaaagcatttgacagttgtgcaacacaagaatgttgtttttcagttcaggaccacagcattgacatatccgaaaatggaagtcaaggaactgatcattatgacagcattaaacaaagcatggtcatcccatgtagctgcaaacatacaccacaagagaaggtaagtcactgtggatttcactctacaactatccctactgatgaagaactagcgaagctggttagaagatgttgcgattacagaccatgccacaacgtccgttctggctgcagaaatcatgctacagaatgtggtccaaccacccgatcaaccatcaatatcttacgggacaaccatcatcatcatcatctagactgcagtggtcgtaaggtttgttcgccaattgagaagagacacattggtggatgctgtgagagcttcagaaaagaatgttgccccaagaacattaatcattttgcatcaagttttggaggaggtttatcagaaattgtattagagtaagatgcaatcttaaaagtgtaaatatgttgcaacttttctacctattttatcttcaagaagctgagatgttattttatatgaacttagctattaccatggcttgtatactaatcctaaaaatggtttgtgtattatttgttgaattctaacaatgttgggaacttcaatgtcatttgcatgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0030C22-WwPK4/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0030C22.2" temp_strand="-" temp_description="C07HBa0030C22.2  AC212610.2 htgs_phase:2 submitted_to_sgn_as:gi|205277491|gb|AC212610.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0030C22, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces">
        <position start="108111" stop="106503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107811" g_stop="106795" g_length="1017"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1020" r_length="1020" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0030C22.2" gen_strand="-" ref_id="SGN-U325948" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>1017</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0030C22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107811" e_stop="106795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATATAACTGACATATCAAAAACTGGAATCCAGGAAACTTCTCATTGTGATAGCACCAATCAAACATGCCAAACTGTAATTTCAGGTAGACACAACCTTTACTCCTACAATAAAACGTTTGATTAAGCAGTGCTGTATCGATCATGTCTACTAATCAAGATTTGAGAATTTCAGGCTCAATGATCTTTGGAGATAATAAGAGCCTGGACTCTGTAGACATCCATGAGTGTCATTCACATGCTCATCCACCCCACAAGGAGGAACCACATCATTCTGTTGGACATGGCTGTTCGGACAAGGAACACGATCATTCACATCCAGAGAAAGCATTTGACAGTTGTGCAACACAAGAATGTTGTTTTTCAGTTCAGGACCACAGCATTGACATATCCGAAAATGGAAGTCAAGGAACTGATCATTGTGACAGCATTAAACAAAGCATGGTCATCCCATGTAGCTGCAAACATACACCACAAGAGAAGGTAAGTCACTGTGGATTTCACTCTACAACTATCCCTACTGATGAAGAACTAGCGAAGCTGGTTAGAAGATGTTGCGATTACAGACCATGCCACAACGTCCGTTCTGGCTGCAGAAATCATGCTACAGAATGTGGTCCAACCACCCGATCAACCATCAATATCTTACGGGACAACCATCATCATCATCATCTAGACTGCAGTGGTCGTAAGGTTTGTTCGCCAATTGAGAAGAGACACATTGGTGGATGCTGTGAGAGCTTCAGAAAAGAATGTTGCCCCAAGAACATTAATCATTTTGCATCAAGTTTTGGAGGAGGTTTATCAGAAATTGTATTAGAGTAAGATGCAATCTTAAAAGTGTAAATATGTTGCAACTTTTCTACCTATTTTATCTTCAAGAAGCTGAGATGCTATTTTGTATGAACTTAGCTATTACCATGGCTTGTATACTAATCCTAAAAATGGTTTGTG---TATTTGTTGAATTCTAACAAAGTTGGGAACTTCAATGTCATTTGCATGAAAAAATCAGCTCA</genome_strand>
        <mrna_strand>GAGATATAACTGACATATCAAAAACTGGAATCCAGGAAACTTCTCATTGTGATAGCACCAATCAAACATGCCAAACTGTAATTTCAGGTAGACACAACCTTTACTCCTACAATAAAACGTTTGATTAAGCAGTGCTGTATCGATCATGTCTACTAATCAAGATTTGAGAATTTCAGGCTCAATGATCTTTGGAGATAATAAGAGCCTGGACTCTGTAGACATCCATGAGTGTCATTCACATGCTCATCCACCCCACAAGGAGGAACCACATCATTCTGTTGGACATGGCTGTTCGGACAAGGAACACGATCATTCACATCCAGAGAAAGCATTTGACAGTTGTGCAACACAAGAATGTTGTTTTTCAGTTCAGGACCACAGCATTGACATATCCGAAAATGGAAGTCAAGGAACTGATCATTATGACAGCATTAAACAAAGCATGGTCATCCCATGTAGCTGCAAACATACACCACAAGAGAAGGTAAGTCACTGTGGATTTCACTCTACAACTATCCCTACTGATGAAGAACTAGCGAAGCTGGTTAGAAGATGTTGCGATTACAGACCATGCCACAACGTCCGTTCTGGCTGCAGAAATCATGCTACAGAATGTGGTCCAACCACCCGATCAACCATCAATATCTTACGGGACAACCATCATCATCATCATCTAGACTGCAGTGGTCGTAAGGTTTGTTCGCCAATTGAGAAGAGACACATTGGTGGATGCTGTGAGAGCTTCAGAAAAGAATGTTGCCCCAAGAACATTAATCATTTTGCATCAAGTTTTGGAGGAGGTTTATCAGAAATTGTATTAGAGTAAGATGCAATCTTAAAAGTGTAAATATGTTGCAACTTTTCTACCTATTTTATCTTCAAGAAGCTGAGATGTTATTTTATATGAACTTAGCTATTACCATGGCTTGTATACTAATCCTAAAAATGGTTTGTGTATTATTTGTTGAATTCTAACAATGTTGGGAACTTCAATGTCATTTGCATGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>10</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="543" PGL_stop="748"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="543" e_stop="748"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="543" e_stop="748" e_length="206"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="543" stop="748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343520" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGTATAATTGTAAATTATATTGATGGTTGACACTTTGAGGTAGAAGAGAACACCACACAAGGAAACAATTTATTTACTTTTTTTTAAAAATGCATTATTTCATACACAAGTACAATAGGAAGTATTTCATAACTAATGTCTTGCACAAATTCAGTATACAATTTGATGGAATACTCATAAATGAAAAAAAATATTAAATTTCCT</gDNA_template>
            <first_frame> *  V  *  L  *  I  I  L  M  V  D  T  L  R  *  K  R  T  P  H  K  E  T  I  Y  L  L  F  F  K  N  A  L  F  H  T  Q  V  Q  *  E  V  F  H  N  *  C  L  A  Q  I  Q  Y  T  I  *  W  N  T  H  K  *  K  K  I  L  N  F   </first_frame>
            <second_frame>  K  Y  N  C  K  L  Y  *  W  L  T  L  *  G  R  R  E  H  H  T  R  K  Q  F  I  Y  F  F  L  K  M  H  Y  F  I  H  K  Y  N  R  K  Y  F  I  T  N  V  L  H  K  F  S  I  Q  F  D  G  I  L  I  N  E  K  K  Y  *  I  S  </second_frame>
            <third_frame>   S  I  I  V  N  Y  I  D  G  *  H  F  E  V  E  E  N  T  T  Q  G  N  N  L  F  T  F  F  *  K  C  I  I  S  Y  T  S  T  I  G  S  I  S  *  L  M  S  C  T  N  S  V  Y  N  L  M  E  Y  S  *  M  K  K  N  I  K  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0030C22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="21158" PGL_stop="15068"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21158" e_stop="20845"/>
            <exon e_start="20514" e_stop="20368"/>
            <exon e_start="20264" e_stop="20202"/>
            <exon e_start="15667" e_stop="15501"/>
            <exon e_start="15396" e_stop="15068"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.925" acc_prob="0.471" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21158" e_stop="20845" e_length="314"/>
          </exon>
          <intron i_serial="1" don_prob="0.925" acc_prob="0.471">
            <gDNA_intron_boundary i_start="20844" i_stop="20515" i_length="330"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20514" e_stop="20368" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="20367" i_stop="20265" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20264" e_stop="20202" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="20201" i_stop="15668" i_length="4534"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15667" e_stop="15501" e_length="167"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15500" i_stop="15397" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15396" e_stop="15068" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21158" stop="20845"/>
              <exon start="20514" stop="20368"/>
              <exon start="20264" stop="20202"/>
              <exon start="15667" stop="15501"/>
              <exon start="15396" stop="15068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTCTCCAAGTACACTAGAGAGCATCGGAGTAGTCAAAGACGCAGAAACAGATTCGATCGGCCGGCCGCCGGAATAAGGATTCTCAGAGTGATTGTTTGAAGAGATGGGTGGCGAATCGAATTACGAGATTCATCAAAACGCCTACATCAAGTTAATCCTTCATGCCCTTAAGCACAAGACTTCCTCCGTCAATGGTGTTCTTCTTGGTAGAATATCCGGCAACGGCGACAACGTCGAAATTGTCGAATCTGTTCCGTTGTTCCACTCTCAGATTGGTTTACTTCCACCACTCGAAATTTCACTTATCATG : ATTGAGGAGTACTATGCTGATAAAGGTTTGAGTATTGTGGGTTATTTTCACGCAAATGAAAGATCCGATGATTTTGAGGTCGGAAATGTGGCCAAGAATATTGGTGATCATATCTACAAATATTTCCCTCAAGCTGCTTTACTTCTG : ATGGATAACAAGAAGCTTGAAGCTTTACTGAAGGAGGGCAAAGACAGGAGTCCTGTTATGCAG : CTTTACACTAAGGAATCATCTAGGAGCTGGAAACTAGCGGGAGCTGATGCAAGCGGCTCTCTGAAAATCAAAGAACCATCTGCAAATATTGTTCTTCTAGACTATGTCTCATCAGGGAAATGGAAGGACATCGTGGATTTCGATGACCATCTGGATGACATTAGCAA : GGACTGGCTGAATCCAGAACTCTTCAAGTGAGATGTCTACAGAGAGGATGACACAATTATCCTGTTGTTACCGCGTGTGATATTTGGTGTTTATCCCTCCCGCGTAGTTGCTGAGTTTATGAAGAAACAATCTAATGACTCTGAATTTGCAGACTGTTGAAGATTACCAATTACCTAATGGCTTTTGAATATTGTTAGAAGATAGGGTTCATATCATTGCATAATTACGCGTTTCTAATAGGTCAAACATGAATTTTTTGAGCAACACAACTCAATTTTGTACTGAATGGGGAACCATGAGTTTTTATTTTTAAACTAAATTATTTTGC</gDNA_template>
            <first_frame> K  I  L  Q  V  H  *  R  A  S  E  *  S  K  T  Q  K  Q  I  R  S  A  G  R  R  N  K  D  S  Q  S  D  C  L  K  R  W  V  A  N  R  I  T  R  F  I  K  T  P  T  S  S  *  S  F  M  P  L  S  T  R  L  P  P  S  M  V  F  F  L  V  E  Y  P  A  T  A  T  T  S  K  L  S  N  L  F  R  C  S  T  L  R  L  V  Y  F  H  H  S  K  F  H  L  S  * :   L  R  S  T  M  L  I  K  V  *  V  L  W  V  I  F  T  Q  M  K  D  P  M  I  L  R  S  E  M  W  P  R  I  L  V  I  I  S  T  N  I  S  L  K  L  L  Y  F  * :   W  I  T  R  S  L  K  L  Y  *  R  R  A  K  T  G  V  L  L  C  S :   F  T  L  R  N  H  L  G  A  G  N  *  R  E  L  M  Q  A  A  L  *  K  S  K  N  H  L  Q  I  L  F  F  *  T  M  S  H  Q  G  N  G  R  T  S  W  I  S  M  T  I  W  M  T  L  A   : R  T  G  *  I  Q  N  S  S  S  E  M  S  T  E  R  M  T  Q  L  S  C  C  Y  R  V  *  Y  L  V  F  I  P  P  A  *  L  L  S  L  *  R  N  N  L  M  T  L  N  L  Q  T  V  E  D  Y  Q  L  P  N  G  F  *  I  L  L  E  D  R  V  H  I  I  A  *  L  R  V  S  N  R  S  N  M  N  F  L  S  N  T  T  Q  F  C  T  E  W  G  T  M  S  F  Y  F  *  T  K  L  F  C </first_frame>
            <second_frame>  K  F  S  K  Y  T  R  E  H  R  S  S  Q  R  R  R  N  R  F  D  R  P  A  A  G  I  R  I  L  R  V  I  V  *  R  D  G  W  R  I  E  L  R  D  S  S  K  R  L  H  Q  V  N  P  S  C  P  *  A  Q  D  F  L  R  Q  W  C  S  S  W  *  N  I  R  Q  R  R  Q  R  R  N  C  R  I  C  S  V  V  P  L  S  D  W  F  T  S  T  T  R  N  F  T  Y  H   : D  *  G  V  L  C  *  *  R  F  E  Y  C  G  L  F  S  R  K  *  K  I  R  *  F  *  G  R  K  C  G  Q  E  Y  W  *  S  Y  L  Q  I  F  P  S  S  C  F  T  S   : D  G  *  Q  E  A  *  S  F  T  E  G  G  Q  R  Q  E  S  C  Y  A   : A  L  H  *  G  I  I  *  E  L  E  T  S  G  S  *  C  K  R  L  S  E  N  Q  R  T  I  C  K  Y  C  S  S  R  L  C  L  I  R  E  M  E  G  H  R  G  F  R  *  P  S  G  *  H  *  Q  :  G  L  A  E  S  R  T  L  Q  V  R  C  L  Q  R  G  *  H  N  Y  P  V  V  T  A  C  D  I  W  C  L  S  L  P  R  S  C  *  V  Y  E  E  T  I  *  *  L  *  I  C  R  L  L  K  I  T  N  Y  L  M  A  F  E  Y  C  *  K  I  G  F  I  S  L  H  N  Y  A  F  L  I  G  Q  T  *  I  F  *  A  T  Q  L  N  F  V  L  N  G  E  P  *  V  F  I  F  K  L  N  Y  F   </second_frame>
            <third_frame>   N  S  P  S  T  L  E  S  I  G  V  V  K  D  A  E  T  D  S  I  G  R  P  P  E  *  G  F  S  E  *  L  F  E  E  M  G  G  E  S  N  Y  E  I  H  Q  N  A  Y  I  K  L  I  L  H  A  L  K  H  K  T  S  S  V  N  G  V  L  L  G  R  I  S  G  N  G  D  N  V  E  I  V  E  S  V  P  L  F  H  S  Q  I  G  L  L  P  P  L  E  I  S  L  I  M  :  I  E  E  Y  Y  A  D  K  G  L  S  I  V  G  Y  F  H  A  N  E  R  S  D  D  F  E  V  G  N  V  A  K  N  I  G  D  H  I  Y  K  Y  F  P  Q  A  A  L  L  L  :  M  D  N  K  K  L  E  A  L  L  K  E  G  K  D  R  S  P  V  M  Q  :  L  Y  T  K  E  S  S  R  S  W  K  L  A  G  A  D  A  S  G  S  L  K  I  K  E  P  S  A  N  I  V  L  L  D  Y  V  S  S  G  K  W  K  D  I  V  D  F  D  D  H  L  D  D  I  S  K :   D  W  L  N  P  E  L  F  K  *  D  V  Y  R  E  D  D  T  I  I  L  L  L  P  R  V  I  F  G  V  Y  P  S  R  V  V  A  E  F  M  K  K  Q  S  N  D  S  E  F  A  D  C  *  R  L  P  I  T  *  W  L  L  N  I  V  R  R  *  G  S  Y  H  C  I  I  T  R  F  *  *  V  K  H  E  F  F  E  Q  H  N  S  I  L  Y  *  M  G  N  H  E  F  L  F  L  N  *  I  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21063" stop="20845"/>
                    <exon start="20514" stop="20368"/>
                    <exon start="20264" stop="20202"/>
                    <exon start="15667" stop="15501"/>
                    <exon start="15396" stop="15366"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFEEMGGESNYEIHQNAYIKLILHALKHKTSSVNGVLLGRISGNGDNVEIVESVPLFHSQIGLLPPLEISLIMIEEYYADKGLSIVGYFHANERSDDFEVGNVAKNIGDHIYKYFPQAALLLMDNKKLEALLKEGKDRSPVMQLYTKESSRSWKLAGADASGSLKIKEPSANIVLLDYVSSGKWKDIVDFDDHLDDISKDWLNPELFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="29346" PGL_stop="21815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29346" e_stop="29231"/>
            <exon e_start="25052" e_stop="24944"/>
            <exon e_start="24840" e_stop="24722"/>
            <exon e_start="24370" e_stop="24217"/>
            <exon e_start="22579" e_stop="22435"/>
            <exon e_start="22113" e_stop="21815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.934" e_score="0.991"/>
          <exon-intron don_prob="1.000" acc_prob="0.706" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.894" e_score="0.983"/>
          <exon-intron don_prob="0.988" acc_prob="0.300" e_score="0.981"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.993"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="29346" e_stop="29231" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.934">
            <gDNA_intron_boundary i_start="29230" i_stop="25053" i_length="4178"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25052" e_stop="24944" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.706">
            <gDNA_intron_boundary i_start="24943" i_stop="24841" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="24840" e_stop="24722" e_length="119"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.894">
            <gDNA_intron_boundary i_start="24721" i_stop="24371" i_length="351"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="24370" e_stop="24217" e_length="154"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.300">
            <gDNA_intron_boundary i_start="24216" i_stop="22580" i_length="1637"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="22579" e_stop="22435" e_length="145"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22434" i_stop="22114" i_length="321"/>
          </intron>
          <exon e_serial="6" e_score="0.950">
            <gDNA_exon_boundary e_start="22113" e_stop="21815" e_length="299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29346" stop="29231"/>
              <exon start="25052" stop="24944"/>
              <exon start="24840" stop="24722"/>
              <exon start="24370" stop="24217"/>
              <exon start="22579" stop="22435"/>
              <exon start="22113" stop="21815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGGAGGGTCCTAGTGATGGAATATATAGATGGAACCCCGATTCTGAAGCTAGGAGATGAAATGGCAAAGAGAGGCATCAGTCCAGATGGTAAAATTGCAGCGGTAGCAAGGCA : GAACATACTTAAAAGTTTGTCCCTAGCTTATGGACAAATGATACTCAGGAGTGGTTTCTTTCATGCAGATCCTCATCCAGGGAATATTCTAATCTGCAAAGGTGCTGAG : GTTGCATTGCTGGACTATGGACAAGTTAAGGATCTTCCAGAAAATCTCAGGCTTGGATATGCTAAACTTATTCTTGCTATTGCTGATGGCAATGCTACTACGGCCAAAGAAAGCTTTAA : GGAGCTTGGCATAGATACCCTAAGCAAATGTGAGGATGAGCAGAAAGAAATGCTTAAATTGGCACAAGGGATGTTTGACACAAAATTACCACCTGGTGTAAAGATGATGCAACCTTTCTCAGAAGAATCTTCAGTCAAAAAAATTGCAGTTGAG : GCTTTTCCAGAAGAACTTTTCTCGATTCTTCGAACTCTGCAAATACTGAGAGGGCTTAGTGTTGGTCTGGGAATAAGTCATTCATGTGCTGAACAGTGGAGACCTATTGCTGAGGAAGCTTTGTATAATGCTGGAAGATTGACAG : ATATAGATATGAAGCGATCACATAGACATAGAACCAGAAGAAAGTCCGGAAAATAACATCTAGCGAGTCAAGAGGAGCAAAGTATGAACGAAATCGGAGATGGTCATATTGCTAAATTTTTGGAGAAAGAGCAATGGTTTGCTTTTGTAGCAAAGCTTTTCAAGGACAAGTGACCACAAAAACACTACATTGCTTTGTATTTTTTTCTCTTCCTGTGGCCTTGCAACAATTTCTGTACAACATGGCCTGTAATTGAATTGATAATTGGCAAAACAGGTAAAAAGAGATGCATTTTGATC</gDNA_template>
            <first_frame> K  R  R  V  L  V  M  E  Y  I  D  G  T  P  I  L  K  L  G  D  E  M  A  K  R  G  I  S  P  D  G  K  I  A  A  V  A  R  Q :   N  I  L  K  S  L  S  L  A  Y  G  Q  M  I  L  R  S  G  F  F  H  A  D  P  H  P  G  N  I  L  I  C  K  G  A  E  :  V  A  L  L  D  Y  G  Q  V  K  D  L  P  E  N  L  R  L  G  Y  A  K  L  I  L  A  I  A  D  G  N  A  T  T  A  K  E  S  F  K :   E  L  G  I  D  T  L  S  K  C  E  D  E  Q  K  E  M  L  K  L  A  Q  G  M  F  D  T  K  L  P  P  G  V  K  M  M  Q  P  F  S  E  E  S  S  V  K  K  I  A  V  E  :  A  F  P  E  E  L  F  S  I  L  R  T  L  Q  I  L  R  G  L  S  V  G  L  G  I  S  H  S  C  A  E  Q  W  R  P  I  A  E  E  A  L  Y  N  A  G  R  L  T   : D  I  D  M  K  R  S  H  R  H  R  T  R  R  K  S  G  K  *  H  L  A  S  Q  E  E  Q  S  M  N  E  I  G  D  G  H  I  A  K  F  L  E  K  E  Q  W  F  A  F  V  A  K  L  F  K  D  K  *  P  Q  K  H  Y  I  A  L  Y  F  F  L  F  L  W  P  C  N  N  F  C  T  T  W  P  V  I  E  L  I  I  G  K  T  G  K  K  R  C  I  L  I </first_frame>
            <second_frame>  K  G  G  S  *  *  W  N  I  *  M  E  P  R  F  *  S  *  E  M  K  W  Q  R  E  A  S  V  Q  M  V  K  L  Q  R  *  Q  G   : R  T  Y  L  K  V  C  P  *  L  M  D  K  *  Y  S  G  V  V  S  F  M  Q  I  L  I  Q  G  I  F  *  S  A  K  V  L  R :   L  H  C  W  T  M  D  K  L  R  I  F  Q  K  I  S  G  L  D  M  L  N  L  F  L  L  L  L  M  A  M  L  L  R  P  K  K  A  L   : R  S  L  A  *  I  P  *  A  N  V  R  M  S  R  K  K  C  L  N  W  H  K  G  C  L  T  Q  N  Y  H  L  V  *  R  *  C  N  L  S  Q  K  N  L  Q  S  K  K  L  Q  L  R :   L  F  Q  K  N  F  S  R  F  F  E  L  C  K  Y  *  E  G  L  V  L  V  W  E  *  V  I  H  V  L  N  S  G  D  L  L  L  R  K  L  C  I  M  L  E  D  *  Q  :  I  *  I  *  S  D  H  I  D  I  E  P  E  E  S  P  E  N  N  I  *  R  V  K  R  S  K  V  *  T  K  S  E  M  V  I  L  L  N  F  W  R  K  S  N  G  L  L  L  *  Q  S  F  S  R  T  S  D  H  K  N  T  T  L  L  C  I  F  F  S  S  C  G  L  A  T  I  S  V  Q  H  G  L  *  L  N  *  *  L  A  K  Q  V  K  R  D  A  F  *   </second_frame>
            <third_frame>   K  E  G  P  S  D  G  I  Y  R  W  N  P  D  S  E  A  R  R  *  N  G  K  E  R  H  Q  S  R  W  *  N  C  S  G  S  K  A  :  E  H  T  *  K  F  V  P  S  L  W  T  N  D  T  Q  E  W  F  L  S  C  R  S  S  S  R  E  Y  S  N  L  Q  R  C  *   : G  C  I  A  G  L  W  T  S  *  G  S  S  R  K  S  Q  A  W  I  C  *  T  Y  S  C  Y  C  *  W  Q  C  Y  Y  G  Q  R  K  L  *  :  G  A  W  H  R  Y  P  K  Q  M  *  G  *  A  E  R  N  A  *  I  G  T  R  D  V  *  H  K  I  T  T  W  C  K  D  D  A  T  F  L  R  R  I  F  S  Q  K  N  C  S  *   : G  F  S  R  R  T  F  L  D  S  S  N  S  A  N  T  E  R  A  *  C  W  S  G  N  K  S  F  M  C  *  T  V  E  T  Y  C  *  G  S  F  V  *  C  W  K  I  D  R :   Y  R  Y  E  A  I  T  *  T  *  N  Q  K  K  V  R  K  I  T  S  S  E  S  R  G  A  K  Y  E  R  N  R  R  W  S  Y  C  *  I  F  G  E  R  A  M  V  C  F  C  S  K  A  F  Q  G  Q  V  T  T  K  T  L  H  C  F  V  F  F  S  L  P  V  A  L  Q  Q  F  L  Y  N  M  A  C  N  *  I  D  N  W  Q  N  R  *  K  E  M  H  F  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29346" stop="29231"/>
                    <exon start="25052" stop="24944"/>
                    <exon start="24840" stop="24722"/>
                    <exon start="24370" stop="24217"/>
                    <exon start="22579" stop="22435"/>
                    <exon start="22113" stop="22058"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRRVLVMEYIDGTPILKLGDEMAKRGISPDGKIAAVARQNILKSLSLAYGQMILRSGFFHADPHPGNILICKGAEVALLDYGQVKDLPENLRLGYAKLILAIADGNATTAKESFKELGIDTLSKCEDEQKEMLKLAQGMFDTKLPPGVKMMQPFSEESSVKKIAVEAFPEELFSILRTLQILRGLSVGLGISHSCAEQWRPIAEEALYNAGRLTDIDMKRSHRHRTRRKSGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22899" e_stop="22435"/>
            <exon e_start="22113" e_stop="21815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.989"/>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="22899" e_stop="22435" e_length="465"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22434" i_stop="22114" i_length="321"/>
          </intron>
          <exon e_serial="2" e_score="0.943">
            <gDNA_exon_boundary e_start="22113" e_stop="21815" e_length="299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22899" stop="22435"/>
              <exon start="22113" stop="21815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338457" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTCCAACCGTCATGAAAATGACTCTGGATCATTCTGAATTTCAGTCTCTTAAAAATTTGTGAAAATTCAGCTCAATTAGGTCCCATATAATCTGGATTTTAGCTTCTGTGACTTAAAAGTGGTCTGTTTTGTTCTCTTGCATTATGCTCCGCAAATGATAAGGTGGATCTTGTACCTTCTTAAGTTCTTTGTATCACTTAGTACAGTGAATGACGCCTTGTATCACCGGCCTTTCTTATTTGCTGATTAATTTTGTTAAATGTACTTGGTGACATGAGTACTAAGGTCAAAATGTGAACACAATTCTATTTGATGTTAGGCTTTTCCAGAAGAACTTTTCTCGATTCTTCGAACTCTGCAAATACTGAGAGGGCTTAGTGTTGGTCTGGGAATAAGTCATTCATGTGCTGAACAGTGGAGACCTATTGCTGAGGAAGCTTTGTATAATGCTGGAAGATTGACAG : ATATAGATATGAAGCGATCACATAGACATAGAACCAGAAGAAAGTCCGGAAAATAACATCTAGCGAGTCAAGAGGAGCAAAGTATGAACGAAATCGGAGATGGTCATATTGCTAAATTTTTGGAGAAAGAGCAATGGTTTGCTTTTGTAGCAAAGCTTTTCAAGGACAAGTGACCACAAAAACACTACATTGCTTTGTATTTTTTTCTCTTCCTGTGGCCTTGCAACAATTTCTGTACAACATGGCCTGTAATTGAATTGATAATTGGCAAAACAGGTAAAAAGAGATGCATTTTGATC</gDNA_template>
            <first_frame> C  P  T  V  M  K  M  T  L  D  H  S  E  F  Q  S  L  K  N  L  *  K  F  S  S  I  R  S  H  I  I  W  I  L  A  S  V  T  *  K  W  S  V  L  F  S  C  I  M  L  R  K  *  *  G  G  S  C  T  F  L  S  S  L  Y  H  L  V  Q  *  M  T  P  C  I  T  G  L  S  Y  L  L  I  N  F  V  K  C  T  W  *  H  E  Y  *  G  Q  N  V  N  T  I  L  F  D  V  R  L  F  Q  K  N  F  S  R  F  F  E  L  C  K  Y  *  E  G  L  V  L  V  W  E  *  V  I  H  V  L  N  S  G  D  L  L  L  R  K  L  C  I  M  L  E  D  *  Q  :  I  *  I  *  S  D  H  I  D  I  E  P  E  E  S  P  E  N  N  I  *  R  V  K  R  S  K  V  *  T  K  S  E  M  V  I  L  L  N  F  W  R  K  S  N  G  L  L  L  *  Q  S  F  S  R  T  S  D  H  K  N  T  T  L  L  C  I  F  F  S  S  C  G  L  A  T  I  S  V  Q  H  G  L  *  L  N  *  *  L  A  K  Q  V  K  R  D  A  F  *   </first_frame>
            <second_frame>  V  Q  P  S  *  K  *  L  W  I  I  L  N  F  S  L  L  K  I  C  E  N  S  A  Q  L  G  P  I  *  S  G  F  *  L  L  *  L  K  S  G  L  F  C  S  L  A  L  C  S  A  N  D  K  V  D  L  V  P  S  *  V  L  C  I  T  *  Y  S  E  *  R  L  V  S  P  A  F  L  I  C  *  L  I  L  L  N  V  L  G  D  M  S  T  K  V  K  M  *  T  Q  F  Y  L  M  L  G  F  S  R  R  T  F  L  D  S  S  N  S  A  N  T  E  R  A  *  C  W  S  G  N  K  S  F  M  C  *  T  V  E  T  Y  C  *  G  S  F  V  *  C  W  K  I  D  R :   Y  R  Y  E  A  I  T  *  T  *  N  Q  K  K  V  R  K  I  T  S  S  E  S  R  G  A  K  Y  E  R  N  R  R  W  S  Y  C  *  I  F  G  E  R  A  M  V  C  F  C  S  K  A  F  Q  G  Q  V  T  T  K  T  L  H  C  F  V  F  F  S  L  P  V  A  L  Q  Q  F  L  Y  N  M  A  C  N  *  I  D  N  W  Q  N  R  *  K  E  M  H  F  D  </second_frame>
            <third_frame>   S  N  R  H  E  N  D  S  G  S  F  *  I  S  V  S  *  K  F  V  K  I  Q  L  N  *  V  P  Y  N  L  D  F  S  F  C  D  L  K  V  V  C  F  V  L  L  H  Y  A  P  Q  M  I  R  W  I  L  Y  L  L  K  F  F  V  S  L  S  T  V  N  D  A  L  Y  H  R  P  F  L  F  A  D  *  F  C  *  M  Y  L  V  T  *  V  L  R  S  K  C  E  H  N  S  I  *  C  *  A  F  P  E  E  L  F  S  I  L  R  T  L  Q  I  L  R  G  L  S  V  G  L  G  I  S  H  S  C  A  E  Q  W  R  P  I  A  E  E  A  L  Y  N  A  G  R  L  T   : D  I  D  M  K  R  S  H  R  H  R  T  R  R  K  S  G  K  *  H  L  A  S  Q  E  E  Q  S  M  N  E  I  G  D  G  H  I  A  K  F  L  E  K  E  Q  W  F  A  F  V  A  K  L  F  K  D  K  *  P  Q  K  H  Y  I  A  L  Y  F  F  L  F  L  W  P  C  N  N  F  C  T  T  W  P  V  I  E  L  I  I  G  K  T  G  K  K  R  C  I  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22579" stop="22435"/>
                    <exon start="22113" stop="22058"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFPEELFSILRTLQILRGLSVGLGISHSCAEQWRPIAEEALYNAGRLTDIDMKRSHRHRTRRKSGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="34925" PGL_stop="31437"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34925" e_stop="34568"/>
            <exon e_start="33925" e_stop="33797"/>
            <exon e_start="33028" e_stop="32834"/>
            <exon e_start="31627" e_stop="31580"/>
            <exon e_start="31508" e_stop="31437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.933" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.822" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="34925" e_stop="34568" e_length="358"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.933">
            <gDNA_intron_boundary i_start="34567" i_stop="33926" i_length="642"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33925" e_stop="33797" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="33796" i_stop="33029" i_length="768"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33028" e_stop="32834" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32833" i_stop="31628" i_length="1206"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31627" e_stop="31580" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.822">
            <gDNA_intron_boundary i_start="31579" i_stop="31509" i_length="71"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="31508" e_stop="31437" e_length="72"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34925" stop="34568"/>
              <exon start="33925" stop="33797"/>
              <exon start="33028" stop="32834"/>
              <exon start="31627" stop="31580"/>
              <exon start="31508" stop="31437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329887" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAAATCATTACTCCTTACAAGTTACAAATATTTGAGCAACCCCATTCAACAAATTTTAAGAATAGATATTCCAGTAATTTTTTCCAGCCACAAGAAAAAAAAAAGAGAGTATAATGGGTGAATGGCTATCAATGCCCCTTCAAATTTCTTGCAAAATTGAGCTATGGAGGCTGTCTAAAGAAAATATAAGGTGTAAAAATGGTGTCTTTAACCTTATTGAGGCTACGATAGAGTTTACAGAGAAACAATGAGTGTTCAATCTGATTTTCAAGAAAAGGTATCTGCTTGTTTCAGACCTTGGCAACGTTCTTTCCAGTTTTGGGTTCGTGCAGTAGATATATATACTGGTTATAAG : GTGTTTCAATTAAGAGTTGGATTTGAAAAGGATGTGCAAAAACAAGAAGCAATGTGGGAGAGGCAGCATGAGGTTGCAGCTGAGAAGATATATAATATGTGCTCTGACCTTGGTGGGTTCTTCCTAAAG : GTTGCTCAACTAATTGGGAAACCGGACTTGGCCCCTGCTGCATGGGTGAGAAGGTTAGTTACTCTATGTGATCAAGCGCCTGCTACACCGTACAATGTGGTCAGGGCTGTGCTGGAGAAGGAATTAAATCAGAATGTTGATGAATTGTTTGAAAGTTTTGATTTCGATCCTCTCGGTTCTGCTTCTATTGCACAG : GTTCACAGAGCGAGACTCATAGGTGACAAAAGAGATGTTGTTGTCAAG : GTACAACACCCTGGGGTCCAACAGCTGATGATGACCGATATCCACAATTTGCAAGCTTTTGCACTATACTTG</gDNA_template>
            <first_frame> K  K  I  I  T  P  Y  K  L  Q  I  F  E  Q  P  H  S  T  N  F  K  N  R  Y  S  S  N  F  F  Q  P  Q  E  K  K  K  R  V  *  W  V  N  G  Y  Q  C  P  F  K  F  L  A  K  L  S  Y  G  G  C  L  K  K  I  *  G  V  K  M  V  S  L  T  L  L  R  L  R  *  S  L  Q  R  N  N  E  C  S  I  *  F  S  R  K  G  I  C  L  F  Q  T  L  A  T  F  F  P  V  L  G  S  C  S  R  Y  I  Y  W  L  *   : G  V  S  I  K  S  W  I  *  K  G  C  A  K  T  R  S  N  V  G  E  A  A  *  G  C  S  *  E  D  I  *  Y  V  L  *  P  W  W  V  L  P  K   : G  C  S  T  N  W  E  T  G  L  G  P  C  C  M  G  E  K  V  S  Y  S  M  *  S  S  A  C  Y  T  V  Q  C  G  Q  G  C  A  G  E  G  I  K  S  E  C  *  *  I  V  *  K  F  *  F  R  S  S  R  F  C  F  Y  C  T   : G  S  Q  S  E  T  H  R  *  Q  K  R  C  C  C  Q   : G  T  T  P  W  G  P  T  A  D  D  D  R  Y  P  Q  F  A  S  F  C  T  I  L  </first_frame>
            <second_frame>  R  K  S  L  L  L  T  S  Y  K  Y  L  S  N  P  I  Q  Q  I  L  R  I  D  I  P  V  I  F  S  S  H  K  K  K  K  R  E  Y  N  G  *  M  A  I  N  A  P  S  N  F  L  Q  N  *  A  M  E  A  V  *  R  K  Y  K  V  *  K  W  C  L  *  P  Y  *  G  Y  D  R  V  Y  R  E  T  M  S  V  Q  S  D  F  Q  E  K  V  S  A  C  F  R  P  W  Q  R  S  F  Q  F  W  V  R  A  V  D  I  Y  T  G  Y  K  :  V  F  Q  L  R  V  G  F  E  K  D  V  Q  K  Q  E  A  M  W  E  R  Q  H  E  V  A  A  E  K  I  Y  N  M  C  S  D  L  G  G  F  F  L  K  :  V  A  Q  L  I  G  K  P  D  L  A  P  A  A  W  V  R  R  L  V  T  L  C  D  Q  A  P  A  T  P  Y  N  V  V  R  A  V  L  E  K  E  L  N  Q  N  V  D  E  L  F  E  S  F  D  F  D  P  L  G  S  A  S  I  A  Q  :  V  H  R  A  R  L  I  G  D  K  R  D  V  V  V  K  :  V  Q  H  P  G  V  Q  Q  L  M  M  T  D  I  H  N  L  Q  A  F  A  L  Y  L </second_frame>
            <third_frame>   E  N  H  Y  S  L  Q  V  T  N  I  *  A  T  P  F  N  K  F  *  E  *  I  F  Q  *  F  F  P  A  T  R  K  K  K  E  S  I  M  G  E  W  L  S  M  P  L  Q  I  S  C  K  I  E  L  W  R  L  S  K  E  N  I  R  C  K  N  G  V  F  N  L  I  E  A  T  I  E  F  T  E  K  Q  *  V  F  N  L  I  F  K  K  R  Y  L  L  V  S  D  L  G  N  V  L  S  S  F  G  F  V  Q  *  I  Y  I  L  V  I  R :   C  F  N  *  E  L  D  L  K  R  M  C  K  N  K  K  Q  C  G  R  G  S  M  R  L  Q  L  R  R  Y  I  I  C  A  L  T  L  V  G  S  S  *  R :   L  L  N  *  L  G  N  R  T  W  P  L  L  H  G  *  E  G  *  L  L  Y  V  I  K  R  L  L  H  R  T  M  W  S  G  L  C  W  R  R  N  *  I  R  M  L  M  N  C  L  K  V  L  I  S  I  L  S  V  L  L  L  L  H  R :   F  T  E  R  D  S  *  V  T  K  E  M  L  L  S  R :   Y  N  T  L  G  S  N  S  *  *  *  P  I  S  T  I  C  K  L  L  H  Y  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34702" stop="34568"/>
                    <exon start="33925" stop="33797"/>
                    <exon start="33028" stop="32834"/>
                    <exon start="31627" stop="31580"/>
                    <exon start="31508" stop="31437"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GYDRVYRETMSVQSDFQEKVSACFRPWQRSFQFWVRAVDIYTGYKVFQLRVGFEKDVQKQEAMWERQHEVAAEKIYNMCSDLGGFFLKVAQLIGKPDLAPAAWVRRLVTLCDQAPATPYNVVRAVLEKELNQNVDELFESFDFDPLGSASIAQVHRARLIGDKRDVVVKVQHPGVQQLMMTDIHNLQAFALYL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="41791" PGL_stop="42184"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41791" e_stop="42184"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="41791" e_stop="42184" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41791" stop="42184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331960" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAGTAAAACTGTTGGGTCACAAGTGCAGGAACTTCAACTTATTCTCGATGATCTGATTGCTGAAGATATGGTAGTAAATGAGCTTTTGAAGTGGCTGCAATGATCTAGAAGTTGCCTCCTTCGTGAAATGATTTCAACAATTATCTAAAGCACAAGCATAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAATTCAACAATCATTAGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCTAACGGGCAAAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATTTTCTGA</gDNA_template>
            <first_frame> D  S  K  T  V  G  S  Q  V  Q  E  L  Q  L  I  L  D  D  L  I  A  E  D  M  V  V  N  E  L  L  K  W  L  Q  *  S  R  S  C  L  L  R  E  M  I  S  T  I  I  *  S  T  S  I  K  K  *  S  L  K  I  L  *  F  V  S  R  L  R  K  I  T  E  M  P  K  R  S  R  V  R  I  Q  Q  S  L  E  L  I  L  L  K  K  L  L  P  K  T  K  R  E  R  S  L  T  G  K  S  Q  N  R  P  R  R  N  S  K  A  T  V  I  I  V  A  R  L  V  I  D  F  L  </first_frame>
            <second_frame>  I  V  K  L  L  G  H  K  C  R  N  F  N  L  F  S  M  I  *  L  L  K  I  W  *  *  M  S  F  *  S  G  C  N  D  L  E  V  A  S  F  V  K  *  F  Q  Q  L  S  K  A  Q  A  *  R  N  E  A  *  R  S  C  D  S  S  Q  D  *  G  R  *  Q  K  C  R  K  E  V  A  *  E  F  N  N  H  *  S  *  Y  C  *  R  S  S  Y  Q  R  Q  K  E  K  E  V  *  R  A  K  V  R  T  G  Q  E  E  I  Q  R  Q  L  L  *  L  W  Q  G  W  S  *  I  F  * </second_frame>
            <third_frame>   *  *  N  C  W  V  T  S  A  G  T  S  T  Y  S  R  *  S  D  C  *  R  Y  G  S  K  *  A  F  E  V  A  A  M  I  *  K  L  P  P  S  *  N  D  F  N  N  Y  L  K  H  K  H  K  E  M  K  L  E  D  L  V  I  R  L  K  I  E  E  D  N  R  N  A  E  K  K  S  R  K  N  S  T  I  I  R  V  N  I  V  E  E  A  P  T  K  D  K  K  R  K  K  S  N  G  Q  K  S  E  Q  A  K  K  K  F  K  G  N  C  Y  N  C  G  K  A  G  H  R  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41919" stop="42182"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDFNNYLKHKHKEMKLEDLVIRLKIEEDNRNAEKKSRKNSTIIRVNIVEEAPTKDKKRKKSNGQKSEQAKKKFKGNCYNCGKAGHRFS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41980" stop="42183"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVSRLRKITEMPKRSRVRIQQSLELILLKKLLPKTKRERSLTGKSQNRPRRNSKATVIIVARLVIDFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="62286" PGL_stop="62012"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62286" e_stop="62012"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="62286" e_stop="62012" e_length="275"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62286" stop="62012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335086" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGATAAAGTAGCAGGAGTATTGGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTATCAGGCAACTATCAAGCAAGGGGACTTCTTGTTGAATCGCATTCAAAAGCTTTCTCGTGTCATTGATCTCTGAAGCCGTTAAACCGTGCGTTATACTTGTTTTCTCTTCAACTCTCTGTAGCTCTAATATTGATATATTCTGCCTTTTCATATTGAACTCTTGGGGGAGTATTATTTTAGTAATTTTCTGAAATCAAAGAGATTTTCTGTGTTGGG</gDNA_template>
            <first_frame> I  D  K  V  A  G  V  L  E  T  N  R  P  D  A  K  N  A  L  Y  Q  A  T  I  K  Q  G  D  F  L  L  N  R  I  Q  K  L  S  R  V  I  D  L  *  S  R  *  T  V  R  Y  T  C  F  L  F  N  S  L  *  L  *  Y  *  Y  I  L  P  F  H  I  E  L  L  G  E  Y  Y  F  S  N  F  L  K  S  K  R  F  S  V  L   </first_frame>
            <second_frame>  L  I  K  *  Q  E  Y  W  K  L  I  V  L  M  Q  R  M  L  F  I  R  Q  L  S  S  K  G  T  S  C  *  I  A  F  K  S  F  L  V  S  L  I  S  E  A  V  K  P  C  V  I  L  V  F  S  S  T  L  C  S  S  N  I  D  I  F  C  L  F  I  L  N  S  W  G  S  I  I  L  V  I  F  *  N  Q  R  D  F  L  C  W  </second_frame>
            <third_frame>   *  *  S  S  R  S  I  G  N  *  S  S  *  C  K  E  C  S  L  S  G  N  Y  Q  A  R  G  L  L  V  E  S  H  S  K  A  F  S  C  H  *  S  L  K  P  L  N  R  A  L  Y  L  F  S  L  Q  L  S  V  A  L  I  L  I  Y  S  A  F  S  Y  *  T  L  G  G  V  L  F  *  *  F  S  E  I  K  E  I  F  C  V  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0030C22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="71236" PGL_stop="71955"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71236" e_stop="71955"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="71236" e_stop="71955" e_length="720"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71236" stop="71721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71662" stop="71955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCACAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCATTTTGGGTCCTTCCCAGCCACCCCTAAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAATCCAAAACCTTTTAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGACTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCTTGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGACAGTATTTCCAGGTACAAGACTCGTTTGGTTGCTAAAGGCTACAATTAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCTTGTTATTCGGCAGAAAACCATTCGCCTGGTACTGTCACTTGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTAGAACCACCGAGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCTAGCAAGCCCCCCGTGCTTGATACACACGTTTGAAAATATT</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  P  I  P  T  T  S  P  A  R  S  I  L  G  P  S  Q  P  P  L  N  H  H  R  P  C  H  P  P  I  L  I  P  C  *  P  V  A  K  P  V  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  P  I  V  N  Q  Q  P  T  L  L  T  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  I  R  K  L  G  F  L  Y  L  S  P  L  G  G  T  Q  W  A  V  N  G  C  T  K  L  N  T  M  Q  M  T  V  F  P  G  T  R  L  V  W  L  L  K  A  T  I  R  S  M  G  L  I  T  P  R  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  C  H  L  P  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  R  T  T  E  L  C  *  S  P  L  P  S  T  C  L  Q  T  P  E  V  S  V  W  A  L  A  S  P  P  C  L  I  H  T  F  E  N  I </first_frame>
            <second_frame>  H  P  Q  Y  T  H  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  Q  P  D  P  F  W  V  L  P  S  H  P  *  I  T  T  A  R  A  T  P  Q  Y  S  S  H  V  N  P  W  Q  S  R  Y  L  *  I  Q  N  L  L  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  L  L  C  *  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  R  *  Q  Y  F  Q  V  Q  D  S  F  G  C  *  R  L  Q  L  G  V  W  A  *  L  L  R  D  I  Q  S  C  Y  S  A  E  N  H  S  P  G  T  V  T  C  R  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  E  P  P  S  Y  V  D  P  R  F  P  Q  H  V  C  K  L  Q  K  S  L  Y  G  L  *  Q  A  P  R  A  *  Y  T  R  L  K  I   </second_frame>
            <third_frame>   T  H  N  T  P  T  T  T  T  H  T  H  N  Q  P  E  P  P  H  T  H  N  I  S  S  P  I  H  F  G  S  F  P  A  T  P  K  S  P  P  P  V  P  P  P  N  T  H  P  M  L  T  R  G  K  A  G  I  F  K  S  K  T  F  *  A  T  I  L  P  N  T  P  L  P  D  S  E  P  T  T  Y  S  V  D  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  D  Q  K  T  W  V  L  V  P  K  P  L  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  D  D  S  I  S  R  Y  K  T  R  L  V  A  K  G  Y  N  *  E  Y  G  L  D  Y  S  E  T  F  S  L  V  I  R  Q  K  T  I  R  L  V  L  S  L  A  V  R  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  *  N  H  R  A  M  L  I  P  A  S  L  N  M  F  A  N  S  R  S  L  C  M  G  S  S  K  P  P  V  L  D  T  H  V  *  K  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71545" stop="71862"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIRKLGFLYLSPLGGTQWAVNGCTKLNTMQMTVFPGTRLVWLLKATIRSMGLITPRHSVLLFGRKPFAWYCHLPCATIGSSISWMFPMLFFMACLMKLSRTTELC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71433" stop="71687"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATILPNTPLPDSEPTTYSVDSKNAYWRHAMDDEFKALTDQKTWVLVPKPLGRHPVGCKWVYKIKHNADDSISRYKTRLVAKGYN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71238" stop="71432"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNTPTTTTHTHNQPEPPHTHNISSPIHFGSFPATPKSPPPVPPPNTHPMLTRGKAGIFKSKTF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="107811" PGL_stop="106795"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107811" e_stop="106795"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="107811" e_stop="106795" e_length="1017"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107811" stop="106795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGATATAACTGACATATCAAAAACTGGAATCCAGGAAACTTCTCATTGTGATAGCACCAATCAAACATGCCAAACTGTAATTTCAGGTAGACACAACCTTTACTCCTACAATAAAACGTTTGATTAAGCAGTGCTGTATCGATCATGTCTACTAATCAAGATTTGAGAATTTCAGGCTCAATGATCTTTGGAGATAATAAGAGCCTGGACTCTGTAGACATCCATGAGTGTCATTCACATGCTCATCCACCCCACAAGGAGGAACCACATCATTCTGTTGGACATGGCTGTTCGGACAAGGAACACGATCATTCACATCCAGAGAAAGCATTTGACAGTTGTGCAACACAAGAATGTTGTTTTTCAGTTCAGGACCACAGCATTGACATATCCGAAAATGGAAGTCAAGGAACTGATCATTGTGACAGCATTAAACAAAGCATGGTCATCCCATGTAGCTGCAAACATACACCACAAGAGAAGGTAAGTCACTGTGGATTTCACTCTACAACTATCCCTACTGATGAAGAACTAGCGAAGCTGGTTAGAAGATGTTGCGATTACAGACCATGCCACAACGTCCGTTCTGGCTGCAGAAATCATGCTACAGAATGTGGTCCAACCACCCGATCAACCATCAATATCTTACGGGACAACCATCATCATCATCATCTAGACTGCAGTGGTCGTAAGGTTTGTTCGCCAATTGAGAAGAGACACATTGGTGGATGCTGTGAGAGCTTCAGAAAAGAATGTTGCCCCAAGAACATTAATCATTTTGCATCAAGTTTTGGAGGAGGTTTATCAGAAATTGTATTAGAGTAAGATGCAATCTTAAAAGTGTAAATATGTTGCAACTTTTCTACCTATTTTATCTTCAAGAAGCTGAGATGCTATTTTGTATGAACTTAGCTATTACCATGGCTTGTATACTAATCCTAAAAATGGTTTGTGTATTTGTTGAATTCTAACAAAGTTGGGAACTTCAATGTCATTTGCATGAAAAAATCAGCTCA</gDNA_template>
            <first_frame> E  I  *  L  T  Y  Q  K  L  E  S  R  K  L  L  I  V  I  A  P  I  K  H  A  K  L  *  F  Q  V  D  T  T  F  T  P  T  I  K  R  L  I  K  Q  C  C  I  D  H  V  Y  *  S  R  F  E  N  F  R  L  N  D  L  W  R  *  *  E  P  G  L  C  R  H  P  *  V  S  F  T  C  S  S  T  P  Q  G  G  T  T  S  F  C  W  T  W  L  F  G  Q  G  T  R  S  F  T  S  R  E  S  I  *  Q  L  C  N  T  R  M  L  F  F  S  S  G  P  Q  H  *  H  I  R  K  W  K  S  R  N  *  S  L  *  Q  H  *  T  K  H  G  H  P  M  *  L  Q  T  Y  T  T  R  E  G  K  S  L  W  I  S  L  Y  N  Y  P  Y  *  *  R  T  S  E  A  G  *  K  M  L  R  L  Q  T  M  P  Q  R  P  F  W  L  Q  K  S  C  Y  R  M  W  S  N  H  P  I  N  H  Q  Y  L  T  G  Q  P  S  S  S  S  S  R  L  Q  W  S  *  G  L  F  A  N  *  E  E  T  H  W  W  M  L  *  E  L  Q  K  R  M  L  P  Q  E  H  *  S  F  C  I  K  F  W  R  R  F  I  R  N  C  I  R  V  R  C  N  L  K  S  V  N  M  L  Q  L  F  Y  L  F  Y  L  Q  E  A  E  M  L  F  C  M  N  L  A  I  T  M  A  C  I  L  I  L  K  M  V  C  V  F  V  E  F  *  Q  S  W  E  L  Q  C  H  L  H  E  K  I  S  S </first_frame>
            <second_frame>  R  Y  N  *  H  I  K  N  W  N  P  G  N  F  S  L  *  *  H  Q  S  N  M  P  N  C  N  F  R  *  T  Q  P  L  L  L  Q  *  N  V  *  L  S  S  A  V  S  I  M  S  T  N  Q  D  L  R  I  S  G  S  M  I  F  G  D  N  K  S  L  D  S  V  D  I  H  E  C  H  S  H  A  H  P  P  H  K  E  E  P  H  H  S  V  G  H  G  C  S  D  K  E  H  D  H  S  H  P  E  K  A  F  D  S  C  A  T  Q  E  C  C  F  S  V  Q  D  H  S  I  D  I  S  E  N  G  S  Q  G  T  D  H  C  D  S  I  K  Q  S  M  V  I  P  C  S  C  K  H  T  P  Q  E  K  V  S  H  C  G  F  H  S  T  T  I  P  T  D  E  E  L  A  K  L  V  R  R  C  C  D  Y  R  P  C  H  N  V  R  S  G  C  R  N  H  A  T  E  C  G  P  T  T  R  S  T  I  N  I  L  R  D  N  H  H  H  H  H  L  D  C  S  G  R  K  V  C  S  P  I  E  K  R  H  I  G  G  C  C  E  S  F  R  K  E  C  C  P  K  N  I  N  H  F  A  S  S  F  G  G  G  L  S  E  I  V  L  E  *  D  A  I  L  K  V  *  I  C  C  N  F  S  T  Y  F  I  F  K  K  L  R  C  Y  F  V  *  T  *  L  L  P  W  L  V  Y  *  S  *  K  W  F  V  Y  L  L  N  S  N  K  V  G  N  F  N  V  I  C  M  K  K  S  A   </second_frame>
            <third_frame>   D  I  T  D  I  S  K  T  G  I  Q  E  T  S  H  C  D  S  T  N  Q  T  C  Q  T  V  I  S  G  R  H  N  L  Y  S  Y  N  K  T  F  D  *  A  V  L  Y  R  S  C  L  L  I  K  I  *  E  F  Q  A  Q  *  S  L  E  I  I  R  A  W  T  L  *  T  S  M  S  V  I  H  M  L  I  H  P  T  R  R  N  H  I  I  L  L  D  M  A  V  R  T  R  N  T  I  I  H  I  Q  R  K  H  L  T  V  V  Q  H  K  N  V  V  F  Q  F  R  T  T  A  L  T  Y  P  K  M  E  V  K  E  L  I  I  V  T  A  L  N  K  A  W  S  S  H  V  A  A  N  I  H  H  K  R  R  *  V  T  V  D  F  T  L  Q  L  S  L  L  M  K  N  *  R  S  W  L  E  D  V  A  I  T  D  H  A  T  T  S  V  L  A  A  E  I  M  L  Q  N  V  V  Q  P  P  D  Q  P  S  I  S  Y  G  T  T  I  I  I  I  I  *  T  A  V  V  V  R  F  V  R  Q  L  R  R  D  T  L  V  D  A  V  R  A  S  E  K  N  V  A  P  R  T  L  I  I  L  H  Q  V  L  E  E  V  Y  Q  K  L  Y  *  S  K  M  Q  S  *  K  C  K  Y  V  A  T  F  L  P  I  L  S  S  R  S  *  D  A  I  L  Y  E  L  S  Y  Y  H  G  L  Y  T  N  P  K  N  G  L  C  I  C  *  I  L  T  K  L  G  T  S  M  S  F  A  *  K  N  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0030C22.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107687" stop="106986"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSSAVSIMSTNQDLRISGSMIFGDNKSLDSVDIHECHSHAHPPHKEEPHHSVGHGCSDKEHDHSHPEKAFDSCATQECCFSVQDHSIDISENGSQGTDHCDSIKQSMVIPCSCKHTPQEKVSHCGFHSTTIPTDEELAKLVRRCCDYRPCHNVRSGCRNHATECGPTTRSTINILRDNHHHHHLDCSGRKVCSPIEKRHIGGCCESFRKECCPKNINHFASSFGGGLSEIVLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 32 chains have been computed
$ 
$ memory statistics:
$ 19312 bytes spliced alignments in total
$ 10 spliced alignments have been stored
$ 1931 bytes was the average size of a spliced alignment
$ 14296 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1787 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 42 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-06 23:31:33
-->
