<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-22 08:28:08"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346876" ref_strand="+" ref_description="SGN-U346876        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttgaatattgttttccggccaccggaatattctattctttctcaatttcaccggaatattctgctctttctcattttcttagcactgcaatatgtctaaattatttggcactgttgttgtactttttctcgtgttaaattccggtgaagcgcaaaatgcaccttctcaatccccaatttcttctccctctaaatcaccggcggtaaaatcacaagcaccggtttcttccccgactaaatcaccggcagtgagatctcaagcaccggtttcttcgccctcggctcctacgattagcccgtctgcagcgccggtacagtcaccgaaagcagcttctccagtaaccagcgtttcacccgcactcactccgtcaatcagtagatctgctccggttccttctgttgcaactcctccgccggtatcaacgccggtgagcactccggcatcttccccggcagcagcggatgttccggccagcactgcgacaccgtcagtatccccaagcataccttcaagttcagcaagtccggcggagtctgttgacggacctactacggcgccggcgagtttatcaccgggaacttcaccagcacccgttgctgatgatgtttccgctgcaatttcagtgttgaaagtgccgatggttctaagtgggcttgctatttgggccgcactttcaatttgaatgcatccggcccaatgttgcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="-" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="4768" stop="3461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4468" g_stop="3761" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="708" r_length="708" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="-" ref_id="SGN-U346876" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4468" e_stop="3761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATATTGTTTTCCGGCCACCGGAATATTCTATTCTTTCTCAATTTCACCGGAATATTCTGCTCTTTCTCATTTTCTTAGCACTGCAATATGTCTAAATTATTTGGCACTGTTGTTGTACTTTTTCTCGTGTTAAATTCCGGTGAAGCGCAAAATGCACCTTCTCAATCCCCAATTTCTTCTCCCTCTAAATCACCGGCGGTAAAATCACAAGCACCGGTTTCTTCCCCGACTAAATCACCGGCAGTGAGATCTCAAGCACCGGTTTCTTCGCCCTCGGCTCCTACGATTAGCCCGTCTGCAGCGCCGGTACAGTCACCGAAAGCAGCTTCTCCAGTAACCAGCGTTTCACCCGCACTCACTCCGTCAATCAGTAGATCTGCTCCGGTTCCTTCTGTTGCAACTCCTCCGCCGGTATCAACGCCGGTGAGCACTCCGGCATCTTCCCCGGCAGCAGCGGATGTTCCGGCCAGCACTGCGACACCGTCAGTATCCCCAAGCATACCTTCAAGTTCAGCAAGTCCGGCGGAGTCTGTTGACGGACCTACTACGGCGCCGGCGAGTTTATCACCGGGAACTTCACCAGCACCCGTTGCTGATGATGTTTCCGCTGCAATTTCAGTGTTGAAAGTGCCGATGGTTCTAAGTGGGCTTGCTATTTGGGCCGCACTTTCAATTTGAATGCATCCGGCCCAATGTTGCACAAA</genome_strand>
        <mrna_strand>TTGAATATTGTTTTCCGGCCACCGGAATATTCTATTCTTTCTCAATTTCACCGGAATATTCTGCTCTTTCTCATTTTCTTAGCACTGCAATATGTCTAAATTATTTGGCACTGTTGTTGTACTTTTTCTCGTGTTAAATTCCGGTGAAGCGCAAAATGCACCTTCTCAATCCCCAATTTCTTCTCCCTCTAAATCACCGGCGGTAAAATCACAAGCACCGGTTTCTTCCCCGACTAAATCACCGGCAGTGAGATCTCAAGCACCGGTTTCTTCGCCCTCGGCTCCTACGATTAGCCCGTCTGCAGCGCCGGTACAGTCACCGAAAGCAGCTTCTCCAGTAACCAGCGTTTCACCCGCACTCACTCCGTCAATCAGTAGATCTGCTCCGGTTCCTTCTGTTGCAACTCCTCCGCCGGTATCAACGCCGGTGAGCACTCCGGCATCTTCCCCGGCAGCAGCGGATGTTCCGGCCAGCACTGCGACACCGTCAGTATCCCCAAGCATACCTTCAAGTTCAGCAAGTCCGGCGGAGTCTGTTGACGGACCTACTACGGCGCCGGCGAGTTTATCACCGGGAACTTCACCAGCACCCGTTGCTGATGATGTTTCCGCTGCAATTTCAGTGTTGAAAGTGCCGATGGTTCTAAGTGGGCTTGCTATTTGGGCCGCACTTTCAATTTGAATGCATCCGGCCCAATGTTGCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340127" ref_strand="+" ref_description="SGN-U340127        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | RNA recognition motif (RRM)-containing protein | chr5:22561166-22564027 REVERSE | Aliases: MDF20.11, MDF20_11(evalue: 2e-53, score=206) genbank/nr: gi|15240556|ref|NP_200378.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gi|9758601|dbj|BAB09234.1| gene_id:MDF20.11~unknown protein [Arabidopsis thaliana](evalue: 1e-51, score=206)">
      <seq>gaagctgagctgagcaagtatggacacgtgaaggaggtgaaattttttgacgaaaaagctagtgggaagtctaaaggatattgccaggttgagtttcatgattcctcagctgccacagcttgcaaggaaagtatgaatggacatatgttcaatgggcgaccatgtgtagtcgcttatgcatcatcaccgtataatgtgaagaggatgggtgaggctcaggtgaatcgaaatcagcaggtggctcaaactgctgttccccaagcaaggcgggggcctggtgaagctgctggtaaaattggaaataacaacactcctactggtggcaattatcaaggcggcggtggtggtggggatggcaacagggggggttatggtagaggcagttggggtagaggaggtcctcaagctatgggaaatcgggggcctgtaggtcctatgagaaacaggcctggtgggattgcaggtaggggtatgatgggtaacggtggaggtggatttggacaaggtatgggtggtgcacctcctattatgcatcctcaaacaatgatgggtcaaggctttgatcctgcttttggagggcctatggggagaatgggtggttatggaggatttcctggtggtccagctccaccatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="+" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="20224" stop="21461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20524" g_stop="21161" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="+" ref_id="SGN-U340127" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20524" e_stop="21161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTGAGCTGAGCAAGTATGGACACGTGAAGGAGGTGAAATTTTTTGACGAAAAAGCTAGTGGGAAGTCTAAAGGATATTGCCAGGTTGAGTTTCATGATTCCTCAGCTGCCACAGCTTGCAAGGAAAGTATGAATGGACATATGTTCAATGGGCGACCATGTGTAGTCGCTTATGCATCATCACCGTATAATGTGAAGAGGATGGGTGAGGCTCAGGTGAATCGAAATCAGCAGGTGGCTCAAACTGCTGTTCCCCAAGCAAGGCGGGGGCCTGGTGAAGCTGCTGGTAAAATTGGAAATAACAACACTCCTACTGGTGGCAATTATCAAGGCGGCGGTGGTGGTGGGGATGGCAACAGGGGGGGTTATGGTAGAGGCAGTTGGGGTAGAGGAGGTCCTCAAGCTATGGGAAATCGGGGGCCTGTAGGTCCTATGAGAAACAGGCCTGGTGGGATTGCAGGTAGGGGTATGATGGGTAACGGTGGAGGTGGATTTGGACAAGGTATGGGTGGTGCACCTCCTATTATGCATCCTCAAACAATGATGGGTCAAGGCTTTGATCCTGCTTTTGGAGGGCCTATGGGGAGAATGGGTGGTTATGGAGGATTTCCTGGTGGTCCAGCTCCACCATTTCC</genome_strand>
        <mrna_strand>GAAGCTGAGCTGAGCAAGTATGGACACGTGAAGGAGGTGAAATTTTTTGACGAAAAAGCTAGTGGGAAGTCTAAAGGATATTGCCAGGTTGAGTTTCATGATTCCTCAGCTGCCACAGCTTGCAAGGAAAGTATGAATGGACATATGTTCAATGGGCGACCATGTGTAGTCGCTTATGCATCATCACCGTATAATGTGAAGAGGATGGGTGAGGCTCAGGTGAATCGAAATCAGCAGGTGGCTCAAACTGCTGTTCCCCAAGCAAGGCGGGGGCCTGGTGAAGCTGCTGGTAAAATTGGAAATAACAACACTCCTACTGGTGGCAATTATCAAGGCGGCGGTGGTGGTGGGGATGGCAACAGGGGGGGTTATGGTAGAGGCAGTTGGGGTAGAGGAGGTCCTCAAGCTATGGGAAATCGGGGGCCTGTAGGTCCTATGAGAAACAGGCCTGGTGGGATTGCAGGTAGGGGTATGATGGGTAACGGTGGAGGTGGATTTGGACAAGGTATGGGTGGTGCACCTCCTATTATGCATCCTCAAACAATGATGGGTCAAGGCTTTGATCCTGCTTTTGGAGGGCCTATGGGGAGAATGGGTGGTTATGGAGGATTTCCTGGTGGTCCAGCTCCACCATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317210" ref_strand="+" ref_description="SGN-U317210        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | RNA recognition motif (RRM)-containing protein | chr5:22561166-22564027 REVERSE | Aliases: MDF20.11, MDF20_11(evalue: 2e-32, score=137) genbank/nr: gi|15240556|ref|NP_200378.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gi|9758601|dbj|BAB09234.1| gene_id:MDF20.11~unknown protein [Arabidopsis thaliana](evalue: 1e-27, score=127)">
      <seq>tttcctggtggtccagctccaccatttcctggtatgttgtcatcttttccacctgttggaggagttgggatgcctggagtagctccgcatgtaaatcctgcattctttggtagaggaatgccaatgaatggtatgggaatgatgccaggcgctggtatggaggggcctaacatggggatgtggtcagaacctaatgcgggtggatgggctggtgacgagcacggtggtagagcaggagagtcaagttatgcagaagaagctgggtctgatcatcagtatggagaaacaactcacgatagaggggcttggccaaataatgtgaaagagaaagacagaggatcagagcgtgattggtctggttctacagatagaaaacatagagaaggcagagaaccatcctatgatagagacatggctcgtgaaaaggatcggggccacgaccaggattggccagagaaaagataccgcgatgatagagatgtcgcacgagacagagagagggaccgggatcatgaacgtcctagagaacgagggcgtgatcgcgagagggatcgtgatcgtcatagggatgatagagatagatatgctgatcatcacaggtacaaggaccgtgagcaagaatatgatgatgaagacagaggaagatcatcaagaggacacagcaaatcacgattatcacatgaggaagaccatcggtcaagatcaagggatgctgattatggaaagaggcggcgtataatatccgagtgatctgtggccttggctgcttattttcaagggtacttcacaatgagatcaattagtagctaatctactgagggtttccatgtgtatccaggctttctactgggaggcttcctttacttcctgcgttcatcaaacagttgctctctgaaatgttctgttgcatacatgtttatgctcttttcctgtttaaggagcactggtctctcagcactaagaacatggaggacgtagagcaagctgtgtgaagaagtatggaagggaactccttgaagcttctgcctgaggaagaatgttatattatatggttttacctctcagtgaagattgaattgctagtggaaccttttatgtcagtttttgaatttatgtttttgttgaatgtgacctgaataatcctttctggtgacttgtgactttattggaagcctagttatagattatcatagacatttgctatttgatgtaatgtgctaggaggatttgacccacaggttggcgccgatctgatcccttgctctggggtttgttgtactaattgtttttctctttgtatcatcgttgtttctttgtttttgacccagttttttagttgggcatatgttgttgtttagcgcttattcttccttctgcaagtgtacatagaatttttcttgttacaagtttttgaaaagtgtacatggaatactaacaagcaaatagttcctgtcattctaaatgaactgtttacatttgtcttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="+" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="14979" stop="92526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21133" g_stop="22102" g_length="970"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="964" r_length="964" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22103" i_stop="24104" i_length="2002">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24105" g_stop="24620" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="965" r_stop="1480" r_length="516" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24621" i_stop="25710" i_length="1090">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25711" g_stop="25733" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1481" r_stop="1503" r_length="23" r_score="0.739"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="+" ref_id="SGN-U317210" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1509</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21133" e_stop="22102"/>
          <exon e_start="24105" e_stop="24620"/>
          <exon e_start="25711" e_stop="25733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTGGTGGTCCAGCTCCACCATTTCCTGGTATGTTGTCATCTTTTCCACCTGTTGGAGGAGTTGGGATGCCTGGAGTAGCTCCGCATGTAAATCCTGCATTCTTTGGTAGAGGAATGCCAATGAATGGTATGGGAATGATGCCAGGCGCTGGTATGGAGGGGCCTAACATGGGGATGTGGTCAGAACCTAATGCGGGTGGATGGGCTGGTGACGAGCACGGTGGTAGAGCAGGAGAGTCAAGTTATGCAGAAGAAGCTGGGTCTGATCATCAGTATGGAGAAACAACTCACGATAGAGGGGCTTGGCCAAATAATGTGAAAGAGAAAGACAGAGGATCAGAGCGTGATTGGTCTGGTTCTACAGATAGAAAACATAGAGAAGGCAGAGAACCATCCTATGATAGAGACATGGCTCGTGAAAAGGATCGGGGCCACGACCAGGATTGGCCAGAGAAAAGATACCGCGATGATAGAGATGTCGCACGAGACAGAGAGAGGGACCGCGATCATGAACGTCCTAGAGAACGAGGGCGTGATCGCGAGAGGGATCGAGATCGTGATCGTCATAGGGATGATAGAGATAGATATGCTGATCATCACAGGTACAAGGACCGTGAGCAGGAATATGATGATGAAGACAGAGGAAGATCATCAAGAGGACACAGCAAATCACGATTATCACATGAGGAAGACCATCGGTCAAGATCAAGGGATGCTGATTATGGAAAGAGGCAGCGTATAACATCAGAGTGATCTGTGGCCTTGGCTGCTTATTTTCAAGGGTACTTCACAATGAGATCAATTAGTAGCTAATCTACTGAGGGTTTCCATGTGTATCCAGGCTTTCTACTGGGAGGCTTCCTTTACTTCCTGCGTTCATCAAACAGTTGCTCTCTGAAATGTTCTGTTGCATACATGTTTATGCTCTTTTCCTGTTTAAGGAGCACTGGTCTCTCAGCACTAAGAAGTAAGTTCACAGCTCCTCTTACATTGAATTTGTTGCTTTTGGTAATGAATACTACATGTATTTGCTATTTCTCTGTTTAGGAGGATGTTCTTTGTCTGAAGGGCTTTCTCAAGCATGATGTGCTAGTTGGGAGGGGACTACTATTATTTATGTGGAACTTTATGTAACCAAAGTTTTCACTGTTTGATGCTGGTCAATCATGGAAAGCTTTCTTTATGATTTGCTGTGTCATGTTATATGCTAAAGCTGAGGCGTTTTTTGTTTTCTGAATCCCGGTGTTAAGAGAACTATATAGAGAATACTGAATCAGTTGTAGATTTTTTTTTTGACTCTTGTAATCTAGAATATATTTTATGTTTTGTAAATATTTGACTGCCAGTACCATCTTGGTACTGAAGAATACACTGCTATCTTATTAAAAAATTATAACAACATCCACAAGTGGGGTTTGGGAAGCATAGGATGTACGCAAATCGTACCCTGACCTTTGTAGGGTAGAGCTGCTGAAAAAAAAGATGATTATTAGGACCCGTTTGACCATGAAACTTGTGAGTTTTGGAAAAAGGTAGTATTTTCTTTCAAAGTGAAAAATGGTATTTGGGAATTGGAGTTGTGTTTGGCCATTAATACCAATTGGAGTTGTTTGTGAATTTGGTGTTTTCAAATTTTGACTTTTTTTGGAAGTAAGTTGCATTCCGGAGCTTTATGGCCTGACATGATTTCCAGAATTCTACTCTGGGAAAAAAGTAATAACATTCATGATCAAACATATGCTTCATGTAGAATTTAACTTCATAAGAAAGTGACTGATACTATAAAAGCCATAGGAAATCCTTGGGGAGTGCATGAAGTTGCTCATTCAATTCTGTAAGTGAACAGCATATATATCTTTTGTAAACCATCAGTCTTCGTTGTCTTTGCACTTTGTTGTTATGTGATATCCTTCAAGCTGATTTATGTCTAATTTTTGTTATTTGGGAAATTTAAAAAAAACATGGCATTTTGAAAACCCTGCAAGGTTTTCAAATTTCATAACTTATTTTGTTAACTAATCATGAATCCTAATAGACTGACCTCCTGGTACTCCTTTGTTATGGAGGGCTATAATTAACATTTCTCTTAGGTTCTTCTTGGTGGGGTTCTTAATAGGAAGTGCTGCATTTTCAGCATAAGCTTGAGATTTTCTAGTAATTTTAGCAGAAGTAGTGTTCCAATTTATTACTCCTTCTGTACCAATGTATGTGGTTGTGTTTGACTGTGCGGAGTTTTAGAATGGATGATAGACTTTTTGGACTAAACTTTTATGCCTGTAAGTATCAAGGATGCCTACATCAGTTGGATTCTCTTGGAAAAATCTAGGATGTGTTTGGAAGGAGTGAAACTGAAGATGTTTTGTTGAAATATCTACTCCAAAGTACTCCCTTAAGGCTAGATGTCTTCAAAATTTATGTAGTTGGAATAGCTTTTCCCCAGTGGACTCTGATGTCAAACTTTTGGATTTTGTTAGCTCCTTATACATAGCATAGGACTCATTGTAACTGAGCTAACAATCTCTTTCGTTTGTAATTATGCATCTTCTTGATGCCATTGATACTACTGCTTACTTTATTTATGGTCTAAAACAAACCATAAACATTTATTTGGTTATAAAGAACAATAAAAGAAATCATATCATCAAGTGTAAGGTTAGAAGTTTAAAGAAAAATATTTGCAAGTATGGCATTTTTCTTGGGATGAAATTGGGAAATCGAAGGGAGCAGTTTTTTTTCTTGGACCAATGTTGGGATGAGGTGAGTTTAATTTGAGAAACATGATTAGTAAGAAGGATACATATAGTTGATACCGACTTACTTGGCAATGAGGAGGAATAGTTGTGTGCTTATTTAGACTTGTGAATTTTGATTTTTACCATGAGACTGACCGACTGTAGTTCCAATGTTTGATTGTTCTTTTTTCTGCAAGGTGTTGATTACAAATTTTGTTTGGTTTCTTGTGATTATAGCATGGAGGACGTAGAGCAAGCTGTGTGAAGAAGTATGGAAGGGAACTCCTTGAAGCTTCTGCCTGAGGAAGAATGTTATATTATATGGTTTTACCTCTCAGTGAAGATTGAATTGCTAGTGGAACCTTTTATGTCAGTTTTTGAATTTATGTTTTTGTTGAATGTGACCTGAATAATCCTTTCTGGTGACTTGTGACTTTATTGGAAGCCTAGTTATAGATTATCATAGACATTTGCTATTTGATGTAATGTGCTAGGAGGATTTGACCCACAGGTTGGCGCCGATCTGATCCCTTGCTCTGGGGTTTGTTGTACTAATTGTTTTTCTCTTTGTATCATCGTTGTTTCTTTGTTTTTGACCCAGTTTTTTAGTTGGGCATATGTTGTTGTTTAGCGCTTATTCTTCCTTCTGCAAGTGTACATAGAATTTTTCTTGTTACAAGTTTTTGAAAAGTGTACATGGAATACTAACAAGAAAATAGTTCCTGTCATTCTAAATGAACTGTTTACATTTGTCTTCTTTGTTTGCATTGTGTCTGTTTGTGTCTCTGTACTGTGCTAAGTTGAGAGAACATTGTTTCATATTTGCATTAGATGGTGCTATGTGCATAGCTCTCAAGTTACACATTTAATTCTTCATTGTTTTCGGCATGAGTTCTTCACTACTGTAATTGTTTTTCATACTTGATTTTCATATGTTTTGCTTGCGTCGAGGGTTTTTTGCAAACAGCCTTCGTGAGAATACATAGGCTGTTGCTCCATTTTTTTGTCCCCTTTGTTATTTCAAAGGAATTTTCTTTGGATCTATGAACCTTTATTTAGCATTCCTTTTTTTATGACAAAGAAAATTCGTCGTCGCTACCCTCTGTCTGGATGTGCTACAGGGTAAACCATTGCTCTTTTACAGTAGCTCGATCTGTACTACCGGTGTGACACGTTAGCTCGATCTGTACTACCGGTGTGACATGTTCGACTCAGAAGGCAAATTTCAAGCTGGCTACATCGAACTATTACAATTTATGTTGAGTGAGGGATTATTTTGGTAATTATGTATACCTTTGATTACAATTTATGACCAAGCAATCAAACTTGTACTAATAAAAAAATCACTTTATCTCAATATTTCAAATCCTTTCATTAAGTGTTCTCTATATATACAATTCAAAATTATTCAACAATACCTATTTCTCAATTAAAAGATGAATATTTGAACAACACTACTACTACCAAAAAAAAAAGACTTGGTTGCATAAGTCTTTATTTTTAGTTCTTTGTCATCTTTACAAAAAGATCTTTATTTCACACATTAAATATCTAAAAAAGTTTTTTTTTTCTATATATTATGGTTGTACCAAAAATATTTTTCTAAAAAAAAAATAGTGGTCCACGTAAGCAACGATAAAAATATCCTATCCTGACCGACCATACCCCATATAAGATGCCGACGTCCCTGATCTTTCGGCTAAACCAACAACCAATCATACACTTCCACGTATTCAACTCCATGCCATTTTTAACACAAACCCCCCTATTATATTCTATCTTATCCTATTCTAAAAATTCAGTGCTTCAACATTTTTCTCCCTGACATATTGTTTATTATTAGTTTCATAAAAAAAATTATAAAAA</genome_strand>
        <mrna_strand>TTTCCTGGTGGTCCAGCTCCACCATTTCCTGGTATGTTGTCATCTTTTCCACCTGTTGGAGGAGTTGGGATGCCTGGAGTAGCTCCGCATGTAAATCCTGCATTCTTTGGTAGAGGAATGCCAATGAATGGTATGGGAATGATGCCAGGCGCTGGTATGGAGGGGCCTAACATGGGGATGTGGTCAGAACCTAATGCGGGTGGATGGGCTGGTGACGAGCACGGTGGTAGAGCAGGAGAGTCAAGTTATGCAGAAGAAGCTGGGTCTGATCATCAGTATGGAGAAACAACTCACGATAGAGGGGCTTGGCCAAATAATGTGAAAGAGAAAGACAGAGGATCAGAGCGTGATTGGTCTGGTTCTACAGATAGAAAACATAGAGAAGGCAGAGAACCATCCTATGATAGAGACATGGCTCGTGAAAAGGATCGGGGCCACGACCAGGATTGGCCAGAGAAAAGATACCGCGATGATAGAGATGTCGCACGAGACAGAGAGAGGGACCGGGATCATGAACGTCCTAGAGAACGAGGGCGTGATCGCGAGA--G---G-GATCGTGATCGTCATAGGGATGATAGAGATAGATATGCTGATCATCACAGGTACAAGGACCGTGAGCAAGAATATGATGATGAAGACAGAGGAAGATCATCAAGAGGACACAGCAAATCACGATTATCACATGAGGAAGACCATCGGTCAAGATCAAGGGATGCTGATTATGGAAAGAGGCGGCGTATAATATCCGAGTGATCTGTGGCCTTGGCTGCTTATTTTCAAGGGTACTTCACAATGAGATCAATTAGTAGCTAATCTACTGAGGGTTTCCATGTGTATCCAGGCTTTCTACTGGGAGGCTTCCTTTACTTCCTGCGTTCATCAAACAGTTGCTCTCTGAAATGTTCTGTTGCATACATGTTTATGCTCTTTTCCTGTTTAAGGAGCACTGGTCTCTCAGCACTAAGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGGACGTAGAGCAAGCTGTGTGAAGAAGTATGGAAGGGAACTCCTTGAAGCTTCTGCCTGAGGAAGAATGTTATATTATATGGTTTTACCTCTCAGTGAAGATTGAATTGCTAGTGGAACCTTTTATGTCAGTTTTTGAATTTATGTTTTTGTTGAATGTGACCTGAATAATCCTTTCTGGTGACTTGTGACTTTATTGGAAGCCTAGTTATAGATTATCATAGACATTTGCTATTTGATGTAATGTGCTAGGAGGATTTGACCCACAGGTTGGCGCCGATCTGATCCCTTGCTCTGGGGTTTGTTGTACTAATTGTTTTTCTCTTTGTATCATCGTTGTTTCTTTGTTTTTGACCCAGTTTTTTAGTTGGGCATATGTTGTTGTTTAGCGCTTATTCTTCCTTCTGCAAGTGTACATAGAATTTTTCTTGTTACAAGTTTTTGAAAAGTGTACATGGAATACTAACAAGCAAATAGTTCCTGTCATTCTAAATGAACTGTTTACATTTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317798" ref_strand="+" ref_description="SGN-U317798        Tomato 200607 #1 [19 ESTs aligned] arabidopsis/peptide: AT4G14540.1 | Symbol: None | CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family, contains Pfam PF00808 : Histone-like transcription factor (CBF/NF-Y) and archaeal histone; similar to LEC1-like protein (GI:22536010) (Phaseolus coccineus) | chr4:8344612-8345214 FORWARD | Aliases: DL3310W, FCAALL.252 (evalue: 4e-55, score=212) genbank/nr: gi|15233475|ref|NP_193190.1| CCAAT-binding transcription factor subunit A(CBF-A) [Arabidopsis thaliana] gi|7443520|pir||G71407 transcription factor, CCAAT-binding, chain A - Arabidopsis thaliana gi|2244810|emb|CAB10233.1| CCAAT-binding transcription factor subunit A(CBF-A) [Arabidopsis thaliana] gi|7268160|emb|CAB78496.1| CCAAT-binding transcription factor subunit A(CBF-A) [Arabidopsis thaliana] gi|26450702|dbj|BAC42460.1| putative CCAAT-binding transcription factor subunit A CBF-A [Arabidopsis thaliana] gi|28372860|gb|AAO39912.1| At4g14540 [Arabidopsis thaliana](evalue: 3e-53, score=212)">
      <seq>agtgcttcaacatttttctccctgacatattgtttattattagtttcataaaaaaaattataaaaattttctccattttcttgttcttaaagcttgtgtactatcataggcaaatacaagactgcgtatacatcaatgtcttcggactttactcgtagaattacatttacgacagaataaagttgtgcatatcgtaccacttgtgagattactccgggtaatttctcttttgtattgatcggaacagaatttaggcgatttcgatggcggattcggataatgaatcaggaggacatagagataacagtaacattgagagttccctaagagaacaagacaggttccttcccatagcaaatgtaagcagaatcatgaagaaagctttaccagctaacgcgaaaatctcaaaagatgctaaggaggtagttcaagaatgtgtttctgaattcataagtttcatcacaggggaagcatcagataagtgtcaaagagaaaagagaaagacaatcaatggtgatgatctgttgtgggcaatgacaactcttggttttgaagaatacattgagccactcaagatttatttgcagaggtttagggatttggaagggcaaaaaagtggtgtctctggagagaaggatcatagtggatcagtgggttatgttgaggactaccatggcatgatgatgatggggagtcaacatcatcaaggacacgggtatggcaccggtgtatacaatcatcatacgggggagaatgctgcaggggttggtacaggagggtcgcggtttcctgacgttgggaggcaaaggtgaagctgtgacatccgcggactacaaagatgtatcaggacgcgatgtatcaactgtcaacaggttgaagtatggacactgaaagacaggaacagactttgtagtttgtattctacagagatgtaaattggtaaacatgtgtgtacattacaatgtgggtgtaaacatggattgtaattgtctattacatcattgtttctctaatagttgatgtttgaataagccttttttagtgtaacaaacgatttacattgtcatatattatcacttcttcaagagtttcaaaccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="+" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="25368" stop="27292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25668" g_stop="25884" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25885" i_stop="26109" i_length="225">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26110" g_stop="26989" g_length="880"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="1097" r_length="880" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1098" polyA_stop="1112"/>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="+" ref_id="SGN-U317798" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1097</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25668" e_stop="25884"/>
          <exon e_start="26110" e_stop="26989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGCTTCAACATTTTTCTCCCTGACATATTGTTTATTATTAGTTTCATAAAAAAAATTATAAAAATTTTCTCCATTTTCTTGTTCTTAAAGCTTGTGTACTATCATAGGCAAATACAAGACTGCGTATACATCAATGTCTTCGGACTTTACTCGTAGAATTACATTTACGACAGAATAAAGTTGTGCATATCGTACCACTTGTGAGATTACTCCGGGTAAGTTGTTGTTCTTGTAGTTCTCTATAAAGTATTATTTGAGCAGAGGATATATCAAAAACCGTCTTCTATCTTTCACCAGATAGGGGTAAGTAAGACTGTGTATGACGCACTATCCTTGTCAAACTCTATTTGTGGAATTACGTTGAGTATGTTGTTGTTTTTTCAGTGAAAAGATCCCAAACTTTGATAAAGTTTGAGTCTTTTTTTTTTCCCTTTCGACAGGTAATTTCTCTTTTGTATTGATCGGAACAGAATTTAGGCGATTTCGATGGCGGATTCGGATAATGAATCAGGAGGACATAGAGATAACAGTAACATTGAGAGTTCCCTAAGAGAACAAGACAGGTTCCTTCCCATAGCAAATGTAAGCAGAATCATGAAGAAAGCTTTACCAGCTAACGCGAAAATCTCAAAAGATGCTAAGGAGGTAGTTCAAGAATGTGTTTCTGAATTCATAAGTTTCATCACAGGGGAAGCATCAGATAAGTGTCAAAGAGAAAAGAGAAAGACAATCAATGGTGATGATCTGTTGTGGGCAATGACAACTCTTGGTTTTGAAGAATACATTGAGCCACTCAAGATTTATTTGCAGAGGTTTAGGGATTTGGAAGGGCAAAAAAGTGGTGTCTCTGGAGAGAAGGATCATAGTGGATCAGTGGGTTATGTTGAGGACTACCATGGCATGATGATGATGGGGAGTCAACATCATCAAGGACACGGGTATGGCACCGGTGTATACAATCATCATACGGGGGAGAATGCTGCAGGGGTTGGTACAGGAGGGTCGCGGTTTCCTGACGTTGGGAGGCAAAGGTGAAGCTGTGACATCCGCGGACTACAAAGATGTATCAGGACGCGATGTATCAACTGTCAACAGGTTGAAGTATGGACACTGAAAGACAGGAACAGACTTTGTAGTTTGTATTCTACAGAGATGTAAATTGGTAAACATGTGTGTACATTACAATGTGGGTGTAAACATGGATTGTAATTGTCTATTACATCATTGTTTCTCTAATAGTTGATGTTTGAATAAGCCTTTTTTAGTGTAACAAACGATTTACATTGTCATATATTATCACTTCTTCAAGAGTTTCAAACC</genome_strand>
        <mrna_strand>AGTGCTTCAACATTTTTCTCCCTGACATATTGTTTATTATTAGTTTCATAAAAAAAATTATAAAAATTTTCTCCATTTTCTTGTTCTTAAAGCTTGTGTACTATCATAGGCAAATACAAGACTGCGTATACATCAATGTCTTCGGACTTTACTCGTAGAATTACATTTACGACAGAATAAAGTTGTGCATATCGTACCACTTGTGAGATTACTCCGG.................................................................................................................................................................................................................................GTAATTTCTCTTTTGTATTGATCGGAACAGAATTTAGGCGATTTCGATGGCGGATTCGGATAATGAATCAGGAGGACATAGAGATAACAGTAACATTGAGAGTTCCCTAAGAGAACAAGACAGGTTCCTTCCCATAGCAAATGTAAGCAGAATCATGAAGAAAGCTTTACCAGCTAACGCGAAAATCTCAAAAGATGCTAAGGAGGTAGTTCAAGAATGTGTTTCTGAATTCATAAGTTTCATCACAGGGGAAGCATCAGATAAGTGTCAAAGAGAAAAGAGAAAGACAATCAATGGTGATGATCTGTTGTGGGCAATGACAACTCTTGGTTTTGAAGAATACATTGAGCCACTCAAGATTTATTTGCAGAGGTTTAGGGATTTGGAAGGGCAAAAAAGTGGTGTCTCTGGAGAGAAGGATCATAGTGGATCAGTGGGTTATGTTGAGGACTACCATGGCATGATGATGATGGGGAGTCAACATCATCAAGGACACGGGTATGGCACCGGTGTATACAATCATCATACGGGGGAGAATGCTGCAGGGGTTGGTACAGGAGGGTCGCGGTTTCCTGACGTTGGGAGGCAAAGGTGAAGCTGTGACATCCGCGGACTACAAAGATGTATCAGGACGCGATGTATCAACTGTCAACAGGTTGAAGTATGGACACTGAAAGACAGGAACAGACTTTGTAGTTTGTATTCTACAGAGATGTAAATTGGTAAACATGTGTGTACATTACAATGTGGGTGTAAACATGGATTGTAATTGTCTATTACATCATTGTTTCTCTAATAGTTGATGTTTGAATAAGCCTTTTTTAGTGTAACAAACGATTTACATTGTCATATATTATCACTTCTTCAAGAGTTTCAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319014" ref_strand="+" ref_description="SGN-U319014        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:13430552-13435776 REVERSE | Aliases: T15N24.80, T15N24_80(evalue: 3e-14, score=76.6) genbank/nr: gi|30687294|ref|NP_194393.3| expressed protein [Arabidopsis thaliana] gi|7487044|pir||T08929 hypothetical protein T15N24.80 - Arabidopsis thaliana gi|4938501|emb|CAB43859.1| putative protein [Arabidopsis thaliana] gi|7269515|emb|CAB79518.1| putative protein [Arabidopsis thaliana](evalue: 2e-12, score=76.6)">
      <seq>tcctgagagatctgatgatgagaagtcagatcaggctgaaagtgagaaggagagtgaatctgaagatgagcctgagcctgagcctgagcctgagcctgagccagagcaagagcctgagcctgagcctgagccagagccggagcctaaggaggacaagaaaaagcataagcagagttcaagtaaatcttcaacaaagaaagaacctgctgtgaaagctaagaccaagaaacctgcagtctctaaagtaccaagtcctcccaaaaagaccccttcaaaatcatcaaagagctcaaagcatattgctaacgatgatgcaactcccaaagcatcttcaaagaagaagaaaactgaagtagttaaagaaaaatcttcaacgccaaagaagtctactcccagagaaaatactgggaaaaagattgtaaagggaaaggacaagagcaaggaggataaactgagaccaagtgatgatgaacttagaaatgcgatttgtgaaattctgaaagaagttgacttcaatacggctacctttactgacattctgaagcaacttgccaagcggtttgataccgatctcatgcccagaaaatcgtctataaagattatgatccaggatgagcttactaaactagctgacgaggaagatgatgaggaagatgaaggtgaggccttgaaggatgctaaaaagccttctaccaaagctgtgaaagcctgaaaacatgagtagaatgtaatcacaggaaatgtagcctacactgtccgtctcaataaccgatctcttcctcatgaatttgtgcctccaggtgctcgttacgagttcaaccagctgtaatctattgtcaatgtatcgttttatgattaatactttgactaggatatcgtagaattataaatgcaagattactgcttgtataaacacatttgtagttttttgtttctgtcaacttatttagctgccctggatcatggattacaagtacaaatactgtagtcaaaatcaacatccatttgtgaccatgtaaggctgttttcttatttatttttgtgggctggaatttttcaagtctagtgttggaacttgaaactatctttgttagtgaatcagctatcagctagtgctttgttgtggtcattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="-" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="29130" stop="26942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28896" g_stop="28496" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28495" i_stop="28384" i_length="112">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28383" g_stop="28271" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="520" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28270" i_stop="28069" i_length="202">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28068" g_stop="28038" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="551" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28037" i_stop="27825" i_length="213">
            <donor d_prob="0.767" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27824" g_stop="27242" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="1131" r_length="580" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1132" polyA_stop="1145"/>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="-" ref_id="SGN-U319014" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>1128</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28896" e_stop="28496"/>
          <exon e_start="28383" e_stop="28271"/>
          <exon e_start="28068" e_stop="28038"/>
          <exon e_start="27824" e_stop="27242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGAGAGATCTGATGATGAGAAGTCAGATCAGGCTGAAAGTGAGAAGGAGAGTGAATCTGAAGATGAGCCT------GAGCCTGAGCCTGAGCCTGAGCCTGAGCAAGAGCCTGAGCCTGAGCCTGAGCCAGAGCCGGAGCCTAAGGAGGACAAGAAAAAGCATAAGCAGAGTTCAAGTAAATCTTCAACAAAGAAAGAACCTGCTGTGAAAGCTAAGACCAAGAAACCTGCAGTCTCTAAAGTACCAAGTCCTCCCAAAAAGACCCCTTCAAAATCATCAAAGAGCTCAAAGCATATTGCTAACGATGATGCAACTCCCAAAGCATCTTCAAAGAAGAAGAAAACTGAAGTAGTTAAAGAAAAATCTTCAACGCCAAAGAAGTCTACTCCCAGAGAAAATACTGGTGAGGATTGCTATATATGCCCATTGGTGGATTGTTATGAGGTGTTCAAATATGGTTGATTTGTACTGATAATTAGCAAAGGTGTTTCTCAAAGAGCTTTGTGTTTGTGCAGGGAAAAAGATTGTAAAGGGAAAGGACAAGAGCAAGGAGGATAAACTGAGACCAAGTGATGATGAACTTAGAAATGCGATTTGTGAAATTCTGAAAGAAGTTGACTTCAATACGGTTAGCATTGAACTCCAATTCATCCCATCTTGCGATTCCCTTGTATGATTGTTCTGTGGAGACGCATACATTTACTTCTCTATATTCCTTTTTGCTATTATGCTCTAACCCATTGTATATTTGAGTGATCCACAGTGGTAATTTTCATTCTCAAATTTTGCATCCCAGAATTCCTAACATCGTGTCTGTTTTGTGCTTGTAGGCTACCTTTACTGACATTCTGAAGCAACTTGGTGAGTGTTCTTATTTTGTCTGTTCTTTTGGCAATTCTTTAGGTGTACTTGGTAAAAAGAAGCTAGGTCTTATTGATTATTGTGTTGGTTCAAGTTATATTTTGAGAAACGTAATGTATGTGCTCCATGAGGCCAGAATAGCAAGATATGTAGATTTCGGATGGCCTCTGTCCTTGTTTCTAAGCAATGCATGACACCTTTTTTCTTCTGCAGCCAAGCGGTTTGATACCGATCTCATGCCCAGAAAATCGTCTATAAAGATTATGATCCAGGATGAGCTTACTAAACTAGCTGACGAGGAAGATGATGAGGAAGATGAAGGTGAGGCCTTGAAGGATGCTAAAAAGCCTTCTACCAAAGCTGTGAAAGCCTGAAAACATGAGTAGAATGTAATCACAGGAAATGTAGCCTACACTGTCCGTCTCAATAACCGATCTCTTCCTCATGAATTTGTGCCTCCAGGTGCTCGTTACGAGTTCAACCAGCTGTAATCTATTGTCAATGTATCGTTTTATGATTAATACTTTGACTAGGATATCGTAGAATTATAAATGCAAGATTACTGCTTGTATAAACACATTTGTAG-TTTTTGTTTCTGTCAACTTATTTAGCTGCCCTGGATCATGGATTACAAGTACAAATACTGTAGTCAAAATCAACATCCATTTGTGACCATGTAAGGCTGTTTTCTTATTTATTTTTGTGGGCTGGGATTTTCCAAGTCTAACTAGTGTTGGAACTTGAAACTGTCTTTGTTAGTGAATCAACTATCAGCTAGTGCTTTGTTGTGGCCATT</genome_strand>
        <mrna_strand>TCCTGAGAGATCTGATGATGAGAAGTCAGATCAGGCTGAAAGTGAGAAGGAGAGTGAATCTGAAGATGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCAGAGCAAGAGCCTGAGCCTGAGCCTGAGCCAGAGCCGGAGCCTAAGGAGGACAAGAAAAAGCATAAGCAGAGTTCAAGTAAATCTTCAACAAAGAAAGAACCTGCTGTGAAAGCTAAGACCAAGAAACCTGCAGTCTCTAAAGTACCAAGTCCTCCCAAAAAGACCCCTTCAAAATCATCAAAGAGCTCAAAGCATATTGCTAACGATGATGCAACTCCCAAAGCATCTTCAAAGAAGAAGAAAACTGAAGTAGTTAAAGAAAAATCTTCAACGCCAAAGAAGTCTACTCCCAGAGAAAATACTG................................................................................................................GGAAAAAGATTGTAAAGGGAAAGGACAAGAGCAAGGAGGATAAACTGAGACCAAGTGATGATGAACTTAGAAATGCGATTTGTGAAATTCTGAAAGAAGTTGACTTCAATACG..........................................................................................................................................................................................................GCTACCTTTACTGACATTCTGAAGCAACTTG.....................................................................................................................................................................................................................CCAAGCGGTTTGATACCGATCTCATGCCCAGAAAATCGTCTATAAAGATTATGATCCAGGATGAGCTTACTAAACTAGCTGACGAGGAAGATGATGAGGAAGATGAAGGTGAGGCCTTGAAGGATGCTAAAAAGCCTTCTACCAAAGCTGTGAAAGCCTGAAAACATGAGTAGAATGTAATCACAGGAAATGTAGCCTACACTGTCCGTCTCAATAACCGATCTCTTCCTCATGAATTTGTGCCTCCAGGTGCTCGTTACGAGTTCAACCAGCTGTAATCTATTGTCAATGTATCGTTTTATGATTAATACTTTGACTAGGATATCGTAGAATTATAAATGCAAGATTACTGCTTGTATAAACACATTTGTAGTTTTTTGTTTCTGTCAACTTATTTAGCTGCCCTGGATCATGGATTACAAGTACAAATACTGTAGTCAAAATCAACATCCATTTGTGACCATGTAAGGCTGTTTTCTTATTTATTTTTGTGGGCTGGAATTTTTCAAG--T--CTAGTGTTGGAACTTGAAACTATCTTTGTTAGTGAATCAGCTATCAGCTAGTGCTTTGTTGTGGTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342451" ref_strand="+" ref_description="SGN-U342451        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gcacgagctttctggaagctactcatgctacaacttctgagttgctggccgagaaggaccagtcaagcagaggaaagaagctgagaagagagagcaataaaagtccctcatcggcatgcgctagctcgaaaggatcaaccaagagtggaaagaaggccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="-" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="30107" stop="28706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29812" g_stop="29751" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29750" i_stop="29664" i_length="87">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.877" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29663" g_stop="29583" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="143" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29582" i_stop="29022" i_length="561">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29021" g_stop="29006" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="159" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="-" ref_id="SGN-U342451" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>159</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29812" e_stop="29751"/>
          <exon e_start="29663" e_stop="29583"/>
          <exon e_start="29021" e_stop="29006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGACTTTCTGGAAGCTCCTCATGCTACAACTTCTGAGTTGCTGGCCGAGAAGGACCAGGTGGGTGACTTCTGACTGTGATAAAAGTATTTGTCACTTGTTCTGTTTGTTTATAGTATGCTGACACATCTCCGGTCAAATGAATAGTCAAGCAGAGGAAAGAAGCGGAGAAGAGAGAGCAAAAAAAGTCCCTCATCGGCATCCGCTAGCTCGAAAGGATCAACCAAGGTATTTCTCTCCTCTTAACATCTATTTGAGTTCTAGTAGTGAAATAATACCAACTGAAATATGGTTTTCCATTTGCAACCGGCTACTTGTATCCTGTAGTCTTAACTCTTAATATTCACGAACAAAATTTGATAAAATCAAAATTCATTGCACAATTTTTTTTTTGTGGTTTTACCTGTTCCCGTCTTGATTTTATGAATCCACATTCTAAGATCTCAGAGGGTTAGTATCACCATGACTTTAACAGTGTAGAAGTTGCCAAAATTCTTGTAATTTATTCTTGCTGCTTTGAAGTGGCTTTGTCTTGGAAGTGTTCGACTGCTAATCTGATCTTTATAGAGTGAGAACTTTTTACCTTAATGAAAAAGAAGAGAAAAAGTGTGTCTTACAATAAGCTGAAATTTTGCGGTCTGGATTAATACTACATATGTTTTAAGAACATTCATCATGTTTATTACCATATGTTGTTTTCGAATTAGAATAAGAAAAAGAAAGGGCGGAGCTGTGCTTTTACATTAATATTTTATTTGGGGGGGTTTGGTTTTCTTTTTAACAATACAGAGTGGAAAGAAGGCCG</genome_strand>
        <mrna_strand>GCACGAGCTTTCTGGAAGCTACTCATGCTACAACTTCTGAGTTGCTGGCCGAGAAGGACCAG.......................................................................................TCAAGCAGAGGAAAGAAGCTGAGAAGAGAGAGCAATAAAAGTCCCTCATCGGCATGCGCTAGCTCGAAAGGATCAACCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAAAGAAGGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="-" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="37351" stop="36309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37051" g_stop="36631" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="-" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37051" e_stop="36631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTCGATGACCAAATTTTTTCTTCGAATAGGAAATTAAATTACAATACACACGAAAAAAATAGTTTAAATTTTTTTCCTTTAAACTAAGGAATGAAATAAAAAAATAAAAAAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGCATGAAAAAAATTAAAATATATCTTGAACTTTGATAGAAGAATCATATATACCCCTAAATA-TTTTTTT-AAGCAAAATTAAAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTTTAACGGTAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAGCCACTTTTACAACGAGGGGTATATCAGCTCCAAATGACAAAGTTGAGAG</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATA-TTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320542" ref_strand="+" ref_description="SGN-U320542        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:22550385-22551304 REVERSE | Aliases: MDF20.8, MDF20_8(evalue: 7e-39, score=157) genbank/nr: gi|18423771|ref|NP_568828.1| expressed protein [Arabidopsis thaliana] gi|9758598|dbj|BAB09231.1| gene_id:MDF20.8~unknown protein [Arabidopsis thaliana] gi|13899123|gb|AAK48983.1| Unknown protein [Arabidopsis thaliana] gi|30102854|gb|AAP21345.1| At5g55640 [Arabidopsis thaliana](evalue: 5e-37, score=157)">
      <seq>aaaacagaggattttagattattttagggtttcggattctcttcgaaaaagattcgattttgatgtaatcttatagctatagttgcgtgctttgattcacttctgaggagaatcgagcggcgacggcgacggcgttgcagtgaaatcgatgatcgtcagctgcaccaaatggaccagtcttcggtgcaaaccgctccttcaatcgaagatgacgagtgggacactgaaggatatgtaattccaagcttggaacttgaagattctggccaaaataacagtaatttagttgaagttgaagagtcgaagacagttgcagctgagtctaagaaagaagagaatatatatcttggacctcacggtgctcctccttcacaatcaaagcaacaagagcttggttctgctaataatcgcaagcagaagtttagacagaaactgaaggaagcagacaagaagtacagcggaagtggtcgtgagaataaggtggaacacttgagagagcttgtgggtggaaaaatggctgcaggatcaaagaattcccccaaggattggcttgaccctcattgtgatgaaaatatgttccaaagaaaccaacgttagcgtaatacaagtgtcatttacatactcggaaacccccttcagtaagtcttcctttcggagggaaaagaaagcttttacagaatatttatgtactctcaaataattcccccagtaacctatgttgtggggctaaatatcaccagtcctctggctgtgcttgtgatatacagattcgatctgagctgctctctttcacaatatttggtatatgaattgtttctttgctttgatttgaaaacaaggatgtgtaaggattcagtttaatatggtgaaacgataatgtgttactgcattgttcatcccccattaattcttaaattattgatgcaaatagaaaaaaagactttattttttataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="+" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="41404" stop="45511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41704" g_stop="41923" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41924" i_stop="44330" i_length="2407">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44331" g_stop="44431" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="321" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44432" i_stop="44572" i_length="141">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44573" g_stop="45213" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="962" r_length="641" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="+" ref_id="SGN-U320542" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>962</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41704" e_stop="41923"/>
          <exon e_start="44331" e_stop="44431"/>
          <exon e_start="44573" e_stop="45213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAGAGGATTTTAGATTATTTTAGGGTTTCGGATTCTCTTCGAAAAAGATTCGATTTTGATGTAATCTTATAGCTATAGTTGCGTGCTTTGATTCACTTCTGAGGAGAATCGAGCGGCGACGGCGACGGCGTTGCAGTGAAATCGATGATCGTCAGCTGCACCAAATGGACCAGTCTTCGGTGCAAACCGCTCCTTCAATCGAAGATGACGAGTGGGGTATTACATTCATCTTTTTTCAATTTTTATTTTCATTGTCGTTTGGTTTTCAATTGGATATATGATGTTCAAGTTCATCAGATTAGTGAATTTATGGATAAGTAGGTTTGTTCTGTTGATTATGGATTAGTAGGTTTGTTCTGTTGATGAATTCATCATAGAGATATGAATTATTATCAATTTTGTCCGGTTAATTTCTGTATCAGCTCTAAAAGGAATTTGCTTATCGGATACCTGTTGCCTGTTGGAGGTGGCAGGTGAATTAGTCATGTGCGTGAAAGTTGGCCTGAACACCATGGTCATAAAAAAAAAGTTGTTAATAGTTGCCAGTCTGATGGAGGTGGTTTAACTTGTTCGAATGCTTTGTCATTTGTGGATAGTGATATGACTTTGATTTGATGAATTTTGCTACTTGGATTAACAGAGGAGTAACACTTTAGGTAGTCGTTTTAGTGAGAGAGGCAGTTCGTACCCACTGTAATACTCGGAGTTTGCACAAGCTAGCTGCTGCCCCTGCTAAATTGCCACATATGAAATTGAGCACAGTTTTGCAAAGAAATAGCCCACTTGTTTCTCGAGAAGAGATGGGAAACATGCTCAATATCATTTGATTGAGTAGTTGACTCAGCCCCTTGTTGTTTGGAGAAACCTTTGTCAAAATTTGAATAAAATTCCACTTTAGGTTGGAACAGAACACAACCTTGTGTTATTTTTCTCTTCTCAATATCTCTACACTTGTAGTAGTTATACATGAGTGAGTGTGGAAGACCTACATTGATGGCATTTACTCTAGATGTGACTGGTATTTGACCTAGTTTATTTGCTGTTTCATCTGTCTGTTTGTCTTTTCTTGAAACAAGTTCACGTTCGCCATGCTGGTGTGGAGAATATGATAGCAATTAGCTTTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTGACTTAAAAGCTGGTTTTTGACTTATTTAACTGTTTGGCAATACTCAAAATAGCTTATTTTAAGTTAAAAAAAACTTATTTTAAGCCAAAAGTTAAAAGCTGGGGTAGGGGTGCTTTTTTTTTTAGCTTATAAGCTGTTTTAAGTTGACCATATTTTTATGTTTTTTCCCTTAATATTTTTATACAATCTCCAAATTACCCATATAACCCTAACATCTCTTTCTTCTATTTTTCCCTTTTCACGTTTGGCATAACAACTTCAGCACTTTTATCCAAACGCATAACTGCTTATTTTAAAAATAAGTTTCAGCACTTTCAAAAGTACTTTTTTAAAGCTGCTTTTATTAAGCCCATCCAAACGGGCCCTTAGTGAATGAGTTCATAGACTGGAAATGCTATATATATGTTTTTTTATTACCAAAATGATTGATATATGATGGTAATTTTATTGGTTCATGACTGGTCCATTAAAGGAATTGCTTTTATCCACAATCCCTTGCCGCACTTCTGTTTTGTCCTTGTATACTTCATTGCAAAGGAATTGTAACTGATATGCGTCTTTAAGATTCTTGGGTGTGTGTTGATCTTTCAAACGCTTGTAATTTTATGCTTTATTTGTTTCATTTGCCAATTTTAGACGGAATGTGGAACATGAACAAGAGCATGAAGTGTTTGGTGAATTAACCTTTTCTTCCCACCAAATCTCACTAGGAAAACTAATGACGAGAAGATCTTAACTTTTTTGCCTAGAGGGTTTTGGTTCTAATGTTAAGGTAATACAACATGAAATGTGTTTAGGCAATACATCACAAGTTCAAAACTTGGTTGTTGAACAAAGCCTAATTTTGAAGTGTGGGTTGCAACAAAGCCTAATTTCAAGTGTGGTTTAAGAATGAATTCATGATCAATCGAGTTTCCTAGCTGTAATATCAGATTTCTCTGTCATTCAATTTTTTAGAAAAATTATAACTAAAGAAAATAGAGGAACATGGAAGCTAGCATAAATGATCTATTGCTGTTGTTGTACACTTGCTGTGGTAAATGTTTGACAGAAGAAAGATATCTATCTTTTTCATTGTTGTTGCAGCCTTTTTATTTATAAATTGCTTGGATTAAAGGATGTCTAAAGCTTTTCCCGGGCTTACTGCTTTTTCTGTTTGTGTAAATGCTCGATTGCTGTCTTCGATTGTTTTACTACCTTGCTACTTTGTGTGGGCTCCTCCTCCTTGAATATGTTATGTGTCACTGTGAAGTACTTATTCTCAGACCATTTCGTTTCTCTGCTAACATATGGGGCTTCATAGTTGGTGATTTTGTTTTGTCATCTCGCTGACATTAGATGCCCAAAAGTAGAGCTCGTATTTTATCTCAACTGAATCTGATTTGTTTGGTTCAAACATGCTGGAATTACACTTCAGATAAAATGTGAATTAACAGAATGATCTGACATTTTGAACCATCAGACACTGAAGGATATGTAATTCCAAGCTTGGAACTTGAAGATTCTGGCCAAAATAACAGTAATTTAGTTGAAGTTGAAGAGTCGAAGACAGTTGCAGCTGAGGTTAGCTCTTTAGCATTTCAGTCTCTACCTAAAAGAAATATTTTGTGATGTCAAAATTCTTCCAGCTTACTAGGAGTATCTTTTTTCAAGATGATTTACAGTCCTTCAAATTGATCTCCTTGCTCACTTACTCTTTCACAGTCTAAGAAAGAAGAGAATATATATCTTGGACCTCACGGTGCTCCTCCTTCACAATCAAAGCAACAAGAGCTTGGTTCTGCTAATAATCGCAAGCAGAAGTTTAGACAGAAACTGAAGGAAGCAGACAAGAAGTACAGCGGAAGTGGTCGTGAGAATAAGGTGGAACACTTGAGAGAGCTTGTGGGTGGAAAAATGGCTGCAGGATCAAAGAATTCCCCCAAGGATTGGCTTGACCCTCATTGTGATGAAAATATGTTCCAAAGAAACCAACGTTAGCGTAATACAAGTGTCATTTACATACTCGGAAACCCCCTTCAGTAAGTCTTCCTTTCGGAGGGAAAAGAAAGCTTTTACAGAATATTTATGTACTCTCAAATAATTCCCCCAGTAACCTATGTTGTGGGGCTAAATATCACCAGTCCTCTGGCTGTGCTTGTGATATACAGATTCGATCTGAGCTGCTCTCTTTCACAATATTTGGTATATGAATTGTTTCTTTGCTTTGATTTGAAAACAAGGATGTGTAAGGATTCAGTTTAATATGGTGAAACGATAATGTGTTACTGCATTGTTCATCCCCCATTAATTCTTAAATTATTGATGCAAATAGAAAAAAAGACTTTATTTTTTATAAAAAAATT</genome_strand>
        <mrna_strand>AAAACAGAGGATTTTAGATTATTTTAGGGTTTCGGATTCTCTTCGAAAAAGATTCGATTTTGATGTAATCTTATAGCTATAGTTGCGTGCTTTGATTCACTTCTGAGGAGAATCGAGCGGCGACGGCGACGGCGTTGCAGTGAAATCGATGATCGTCAGCTGCACCAAATGGACCAGTCTTCGGTGCAAACCGCTCCTTCAATCGAAGATGACGAGTGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTGAAGGATATGTAATTCCAAGCTTGGAACTTGAAGATTCTGGCCAAAATAACAGTAATTTAGTTGAAGTTGAAGAGTCGAAGACAGTTGCAGCTGAG.............................................................................................................................................TCTAAGAAAGAAGAGAATATATATCTTGGACCTCACGGTGCTCCTCCTTCACAATCAAAGCAACAAGAGCTTGGTTCTGCTAATAATCGCAAGCAGAAGTTTAGACAGAAACTGAAGGAAGCAGACAAGAAGTACAGCGGAAGTGGTCGTGAGAATAAGGTGGAACACTTGAGAGAGCTTGTGGGTGGAAAAATGGCTGCAGGATCAAAGAATTCCCCCAAGGATTGGCTTGACCCTCATTGTGATGAAAATATGTTCCAAAGAAACCAACGTTAGCGTAATACAAGTGTCATTTACATACTCGGAAACCCCCTTCAGTAAGTCTTCCTTTCGGAGGGAAAAGAAAGCTTTTACAGAATATTTATGTACTCTCAAATAATTCCCCCAGTAACCTATGTTGTGGGGCTAAATATCACCAGTCCTCTGGCTGTGCTTGTGATATACAGATTCGATCTGAGCTGCTCTCTTTCACAATATTTGGTATATGAATTGTTTCTTTGCTTTGATTTGAAAACAAGGATGTGTAAGGATTCAGTTTAATATGGTGAAACGATAATGTGTTACTGCATTGTTCATCCCCCATTAATTCTTAAATTATTGATGCAAATAGAAAAAAAGACTTTATTTTTTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332466" ref_strand="-" ref_description="SGN-U332466        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G55880.1 | Symbol: None | pyridoxal-5'-phosphate-dependent enzyme, beta family protein, similar to SP:P50867 Cysteine synthase (EC 4.2.99.8) (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (Aspergillus nidulans) {Emericella nidulans}; contains Pfam profile PF00291: Pyridoxal-phosphate dependent enzyme | chr1:20902600-20904830 REVERSE | Aliases: F14J16.13, F14J16_13 (evalue: 5e-95, score=344) genbank/nr: gi|8778327|gb|AAF79336.1| F14J16.13 [Arabidopsis thaliana](evalue: 3e-93, score=344)">
      <seq>gaaaagcagaatatgcagttctcatctgaatgcaagggtggattcttcgcagatcagtttgaaaatcttgcaaatttcaggtcacattatgagggcacggggccagagatttgggaacagacaggtggcaatttggatgcttttattgctgctgcaggtacaggtggcactgttgccggtgtttcccagtatttgaaggacaaaaactcaaatatcaagtgcttccttattgatcctcctggctctggtttatataacaaagtaacaaggggagttatgtacacaagggaagaagccgaaggaagaaggctgaagaacccgtttgatacaataaccgaagggattggaataaatagactaactgaaaattttaagatggcaaaacttgatggagctttccgaggcacagatatggaagctgttgaaatgtccaggtatctgttgaaaaatgatggtctatttattggaagttcttcagcgatgaattgcgttggagctgtcagagtggcaaaggcactaggtccagggcatacaattgtgacaatcttgtgtgacagtggtatgagacacttgagtaagtttcacaatgataaatacctatctgaacatgggttgacaccttcagcaactggtctggagttccttcgtcttagttgatctatggctagttcacgattgtttttcggggcatttaaattcatgacagtaccatctcagagctaatattgtatatactatggtaggaaaaggaagttttgataattttttataagtttaacatcgtttgtgtatgtcagcttgatagagaatattagaggcaggctctaattgttttgatctaattttgtaatgtttaactttcttatttgataaaaacctatctcaatcaagagcttttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="-" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="46810" stop="44972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46510" g_stop="46313" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46312" i_stop="46233" i_length="80">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46232" g_stop="45997" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="434" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45996" i_stop="45744" i_length="253">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45743" g_stop="45279" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="899" r_length="465" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="901" polyA_stop="911"/>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="-" ref_id="SGN-U332466" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332466" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46510" e_stop="46313"/>
          <exon e_start="46232" e_stop="45997"/>
          <exon e_start="45743" e_stop="45279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCAGAATATGCAGTTCTCATCTGAATGCAAGGGTGGATTCTTCGCAGATCAGTTTGAAAATCTTGCAAATTTCAGGTCACATTATGAGGGCACGGGGCCAGAGATTTGGGAACAGACAGGTGGCAATTTGGATGCTTTTATTGCTGCTGCAGGTACAGGTGGCACTGTTGCCGGTGTTTCCCAGTATTTGAAGGTTGGTTCTCAAGTTCTAAAGTTTCTTCATTTTCTGTTGCCGGATGAAGTATGATTTAGAAGCTTCTGTATTATCAACAGGACAAAAACTCAAATATCAAGTGCTTCCTTATTGATCCTCCTGGCTCTGGTTTATATAACAAAGTAACAAGGGGAGTTATGTACACAAGGGAAGAAGCCGAAGGAAGAAGGCTGAAGAACCCGTTTGATACAATAACCGAAGGGATTGGAATAAATAGACTAACTGAAAATTTTAAGATGGCAAAACTTGATGGAGCTTTCCGAGGCACAGATATGGAAGCTGTTGAAATGTCCAGGTTTGTTCCTCTTCAGTCTACTACACATTATAGTATTTTTCTAGTTGCAAAGATGTCAATATGCAGATAAATGTGTTTGGAACATATTACATACCTCTTTTTAATCTTCTCTTGACACAAAAAGATGAAAGCAACAAGAAGATGATTACCAATGTTTTCCACCATTTTTGTCACCTTATTGAACAACTCTTCGCGGTATTTGATAAGCTATGTCTATGATTAGTGGAGCTTAACTAATTCTATGACTCATCAGGTATCTGTTGAAAAATGATGGTCTATTTATTGGAAGTTCTTCAGCGATGAATTGCGTTGGAGCTGTCAGAGTGGCAAAGGCACTAGGTCCAGGGCATACAATTGTGACAATCTTGTGTGACAGTGGTATGAGACACTTGAGTAAGTTTCACAATGATAAATACCTATCTGAACATGGGTTGACACCTTCAGCAACTGGTCTGGAGTTCCTTCGTCTTAGTTGATCTATGGCTAGTTCACGATTGTTTTTCGGGGCATTTAAATTCATGACAGTACCATCTCAGAGCTAATATTGTATATACTATGGTAGGAAAAGGAAGTTTTGATAATTTTTTATAAGTTTAACATCGTTTGTGTATGTCAGCTTGATAGAGAATATTAGAGGCAGGCTCTAATTGTTTTGATCTAATTTTGTAATGTTTAACTTTCTTATTTGATAAAAACCTATCTCAATCAAGAGCTTTTG</genome_strand>
        <mrna_strand>GAAAAGCAGAATATGCAGTTCTCATCTGAATGCAAGGGTGGATTCTTCGCAGATCAGTTTGAAAATCTTGCAAATTTCAGGTCACATTATGAGGGCACGGGGCCAGAGATTTGGGAACAGACAGGTGGCAATTTGGATGCTTTTATTGCTGCTGCAGGTACAGGTGGCACTGTTGCCGGTGTTTCCCAGTATTTGAAG................................................................................GACAAAAACTCAAATATCAAGTGCTTCCTTATTGATCCTCCTGGCTCTGGTTTATATAACAAAGTAACAAGGGGAGTTATGTACACAAGGGAAGAAGCCGAAGGAAGAAGGCTGAAGAACCCGTTTGATACAATAACCGAAGGGATTGGAATAAATAGACTAACTGAAAATTTTAAGATGGCAAAACTTGATGGAGCTTTCCGAGGCACAGATATGGAAGCTGTTGAAATGTCCAG.............................................................................................................................................................................................................................................................GTATCTGTTGAAAAATGATGGTCTATTTATTGGAAGTTCTTCAGCGATGAATTGCGTTGGAGCTGTCAGAGTGGCAAAGGCACTAGGTCCAGGGCATACAATTGTGACAATCTTGTGTGACAGTGGTATGAGACACTTGAGTAAGTTTCACAATGATAAATACCTATCTGAACATGGGTTGACACCTTCAGCAACTGGTCTGGAGTTCCTTCGTCTTAGTTGATCTATGGCTAGTTCACGATTGTTTTTCGGGGCATTTAAATTCATGACAGTACCATCTCAGAGCTAATATTGTATATACTATGGTAGGAAAAGGAAGTTTTGATAATTTTTTATAAGTTTAACATCGTTTGTGTATGTCAGCTTGATAGAGAATATTAGAGGCAGGCTCTAATTGTTTTGATCTAATTTTGTAATGTTTAACTTTCTTATTTGATAAAAACCTATCTCAATCAAGAGCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332853" ref_strand="+" ref_description="SGN-U332853        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G55880.2 | Symbol: None | pyridoxal-5'-phosphate-dependent enzyme, beta family protein, similar to SP:P50867 Cysteine synthase (EC 4.2.99.8) (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (Aspergillus nidulans) {Emericella nidulans}; contains Pfam profile PF00291: Pyridoxal-phosphate dependent enzyme | chr1:20902600-20904830 REVERSE | Aliases: None (evalue: 1e-58, score=223) genbank/nr: gi|42571895|ref|NP_974038.1| pyridoxal-5'-phosphate-dependent enzyme, beta family protein [Arabidopsis thaliana] (evalue: 7e-57, score=223)">
      <seq>gtttcaattacaccggattccgccggagaaccaccgcgatggcgccggtgagaactgcaggcgccatcgcgacgctgatctccgtagccatagtctcttatttcctctgtaaaactactcagcaaaagtcttccggaaaaaagaaacttcaaggacgtagaactggactcgtcgccgccattggcaacactccgttaatcagaatcaataccctctccgatgcaactggctgtgaaattttggggaaagctgaattcttgaatcctggagggagtgtgaaagatagggtagctgtgaagataattgaagaggccctggaatctggagcgttagctgaaggtggagtagttacagagggcagtgcaggaagtacagccattagtctagcaacagtagcacctgcttatgggtgcagatgccatgtggttatcccagatgatgctgctcttgaaaaggcacaaatactagaagcactaggagctactgtagaaagggtgaggccagtttctatcacacaccgagaccattttgttaatattgcaagaagaagggcgctnggagcaagtgaaataacatcaaccaccaggaaaagaaagccaaaatgatgccaatgattctagtcaaatcaatggtcactcaatcagtgaggaaaagcagaatatgcaggtctcatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="-" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="49175" stop="46182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48875" g_stop="48640" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48639" i_stop="48180" i_length="460">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48179" g_stop="48105" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="311" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48104" i_stop="46971" i_length="1134">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46970" g_stop="46827" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="455" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46826" i_stop="46703" i_length="124">
            <donor d_prob="0.724" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46702" g_stop="46482" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="677" r_length="222" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="-" ref_id="SGN-U332853" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48875" e_stop="48640"/>
          <exon e_start="48179" e_stop="48105"/>
          <exon e_start="46970" e_stop="46827"/>
          <exon e_start="46702" e_stop="46482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCAATTACACCGGATTCCGCCGGAGAACCACCGCGATGGCGCCGGTGAGAACTGCAGGCGCCATCGCGACGCTGATCTCCGTAGCCATAGTCTCTTATTTCCTCTGTAAAACTACTCAGCAAAAGTCTTCCGGAAAAAAGAAACTTCAAGGACGTAGAACTGGACTCGTCGCCGCCATTGGCAACACTCCGTTAATCAGAATCAATACCCTCTCCGATGCAACTGGCTGTGAAGTATATTCTCTATCTCTTCATTCCAATTAACCATAATCATGCATAGCTAAATGCTTAAGCTGAAATTATTGTTTGTCAATAAATATGATTAATGAGCTTAATTCCAAATTAGTTGAATTTGGTTGGGTAAATATCATGATTCAGGATTTTGGCACTAATAGGAATTATATATTTAGCTTAATTTTAGGTCCTAATGCAATCCTCTTCCTTTTTTTGAACTTAGACTTGTAATGCTTTTCGAAGCTCATATAGGATGAGTTGTTTATAGGTAGATATATATATAGAGACCACAAGATTTAACGATGTTTGGGTATATTCTATGTATCTTTAGTATAAGACCATATGATTGAATATCTTCTTTACTTTTCAAACTTCGAGTTAAAAAATGACAGAAAAATTGAAACGAAAGGAGTATTTAGGATGAACATGTCTAATAGATAGTATGCCAAATTGTGTTCAGATTTTGGGGAAAGCTGAATTCTTGAATCCTGGAGGGAGTGTGAAAGATAGGGTAGCTGTGAAGATAATTGAAGAGGTAATATTCAGTTCAAATTCCTTTGTTTAGTCGATCGTGTATTAGCTCATTGTAGCTAAATGCTTGCTTATAACTATATCTGTTATTATTGTTTTAACTTTTGTTCAGGTTTTGAAATTTCAATCTGATTCAGTATTCTGAATTGGTCCGATTCATGAGGAGTATATATTGTCTTTATATAGCTCCTATAACTAGCTCCTTTTCTGATTCTTTTTTCGGTTTTTGTTTCAAACACCATTGTTCTTTTCCAACCACAAGTTGAATGTTTAGCAGCAAGCCAGCTTTTGATGACCAGGTACTAATTGATTAGTTTCAAGGGTAGAGGATGATCAAAGTGGTTAATATGCCCATGGTTATCTACACATCTTGCAAGTTGCAACTGGCTAAACTGATTGACAAGGCCATGCCTTTTAGGTGCATCGGAGTGGGAAAAGTTAATAACTTTATGTTAGCAACCGGACACGTGCCTAGGAAATACCAGGGGCAGATCTAAATACGGAATTAACTCATTCTTTTGTGGATATGTACTTAAGTCCATTTATTGGTATGTATGGAGGAGGATATGTAAAGTTGTAGGTAATTACTACTAATAAAGATGTAGATATATACTCATAAGTAGTTCATTTGGAGCTGTTGGGATCCATTTAGAGCCCGTGCTTTTCGCCTAGCCAAAAAAGATTGCCAATATGCCTTTCTTCTGTATTTGAGCAGCCAAAATGAGCTACTTTATGTCAACAGCCTGGGAAATCCTGGGGGAAGTCTAATACCCTATAAGGCATATTTTTTGGAATTCACGGTCATCATTCCAATTTCCAATATATATGGAATGTCAAAGAAGAATACCTGATTCTAGAAGTTGAAAGAGTCCTATTATTTTGCTTCATGTGTTGAAGAAGATTACCTGATTCTATACAGTTGAAAGAGTTCTATAAAGTTGAAGGATAACCTGATTAAGGTTAAAGAGTTCTTGTAGTTATTGGGATGAGAAGGTATTTAGTGAGGAGGAAAGCTAAACTCAGAGACTTGCTTCATGTTTTTATTTTTCTGTAAATTTATTTACATATATCAAGTTTCAATAAACTTGGTTATCTATAAATTCTTTTACTTCCATTAACAGTAAAATATCAATCACAGGCCCTGGAATCTGGAGCGTTAGCTGAAGGTGGAGTAGTTACAGAGGGCAGTGCAGGAAGTACAGCCATTAGTCTAGCAACAGTAGCACCTGCTTATGGGTGCAGATGCCATGTGGTTATCCCAGATGATGCTGCTCTTGAAAAGGTATAGAACATAATGCTTATGGGTGCAGATGCCAAGACACCACCATCTTTTAAAAAAAAGTTGTTTTTCCTAACGAAGACAAATTATTGATACTGATTGAAGTTCTCTCAATTCTTCCTCTCAGGCACAAATACTAGAAGCACTAGGAGCTACTGTAGAAAGGGTGAGGCCAGTTTCTATCACACACCGAGACCATTTTGTTAATATTGCAAGAAGAAGGGCGCTGGAAGCAAGTGAAATAACATCAACCACCA-GAAAAGAAAGCCAAATTGATGCCAATGATTCTAGTCAAATCAATGGTCACTCAATCAGTGAGGAAAAGCAGAATATGCAGTTCTCATCTGA</genome_strand>
        <mrna_strand>GTTTCAATTACACCGGATTCCGCCGGAGAACCACCGCGATGGCGCCGGTGAGAACTGCAGGCGCCATCGCGACGCTGATCTCCGTAGCCATAGTCTCTTATTTCCTCTGTAAAACTACTCAGCAAAAGTCTTCCGGAAAAAAGAAACTTCAAGGACGTAGAACTGGACTCGTCGCCGCCATTGGCAACACTCCGTTAATCAGAATCAATACCCTCTCCGATGCAACTGGCTGTGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGGGGAAAGCTGAATTCTTGAATCCTGGAGGGAGTGTGAAAGATAGGGTAGCTGTGAAGATAATTGAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGGAATCTGGAGCGTTAGCTGAAGGTGGAGTAGTTACAGAGGGCAGTGCAGGAAGTACAGCCATTAGTCTAGCAACAGTAGCACCTGCTTATGGGTGCAGATGCCATGTGGTTATCCCAGATGATGCTGCTCTTGAAAAG............................................................................................................................GCACAAATACTAGAAGCACTAGGAGCTACTGTAGAAAGGGTGAGGCCAGTTTCTATCACACACCGAGACCATTTTGTTAATATTGCAAGAAGAAGGGCGCTNGGAGCAAGTGAAATAACATCAACCACCAGGAAAAGAAAGCCAAAATGATGCCAATGATTCTAGTCAAATCAATGGTCACTCAATCAGTGAGGAAAAGCAGAATATGCAGGTCTCATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328763" ref_strand="+" ref_description="SGN-U328763        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At3g13175.1) | chr4:9260587-9263019 FORWARD | Aliases: DL4230W, FCAALL.356(evalue: 6e-14, score=73.9) genbank/nr: unknown(evalue: 4e-12, score=73.9)">
      <seq>caaaatatttcattacttcgaattcttccgccatggaaatccaaaaattgcttctcaaattcaaattccacatcttaattgcatctagttttacgattttcatcttcgctcttatttacctagcacctcgatttctcgatgttgttaagtatttttggcctctcttactctctactgctctcttcctaatcgccgtcgttctctttggatggatttctccgccggtatctgaggtttccggtgagaaaaccggtgaaggtattttggaattcgtagcgggtcaacccgaagaacaattacaaacgcatctacatgatttacatgaacatgaaggagacggagaagatgaagaaggtgaaagtagtaaagtagagtgaagtgaaattaatggtttattttctgtttttttttttcagttagatactttttttttctttttaaatttttggatattttctgaataatgttaacttgcattattggcctgcaccttacctttggggcctttcttttgattatgaattcggagtttgaaattaatgaattttgaattttagtctttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="+" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="51317" stop="52480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51617" g_stop="52181" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="566" polyA_stop="575"/>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="+" ref_id="SGN-U328763" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51617" e_stop="52181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATATTTCATTACTTCGAATTCTTCCGCCATGGAAATCCAAAAATTGCTTCTCAAATTCAAATTCCACATCTTAATTGCATCTAGTTTTACGATTTTCATCTTCGCTCTTATTTACCTAGCACCTCGATTTCTCGATGTTGTTAAGTATTTTTGGCCTCTCTTACTCTCTACTGCTCTCTTCCTAATCGCCGTCGTTCTCTTTGGATGGATTTCTCCGCCGGTATCTGAGGTTTCCGGTGAGAAAACCGGTGAAGGTATTTTGGAATTCGTAGCGGGTCAACCCGAAGAACAATTACAAACGCATCTACATGATTTACATGAACATGAAGGAGACGGAGAAGATGAAGAAGGTGAAAGTAGTAAAGTAGAGTGAAGTGAAATTAATGGTTTATTTTCTGTTTTTTTTTTTCAGTTAGATACTTTTTTTTTCTTTTTAAATTTTTGTATATTTTCTGAATAATGTTAACTTGCATTATTGGCCTGCACCTTACCTTTGGGGCCTTTCTTTTGATTATGAATTCGGAGTTTGAAATTAATGAATTTTGAATTTTAGTCTTTCAC</genome_strand>
        <mrna_strand>CAAAATATTTCATTACTTCGAATTCTTCCGCCATGGAAATCCAAAAATTGCTTCTCAAATTCAAATTCCACATCTTAATTGCATCTAGTTTTACGATTTTCATCTTCGCTCTTATTTACCTAGCACCTCGATTTCTCGATGTTGTTAAGTATTTTTGGCCTCTCTTACTCTCTACTGCTCTCTTCCTAATCGCCGTCGTTCTCTTTGGATGGATTTCTCCGCCGGTATCTGAGGTTTCCGGTGAGAAAACCGGTGAAGGTATTTTGGAATTCGTAGCGGGTCAACCCGAAGAACAATTACAAACGCATCTACATGATTTACATGAACATGAAGGAGACGGAGAAGATGAAGAAGGTGAAAGTAGTAAAGTAGAGTGAAGTGAAATTAATGGTTTATTTTCTGTTTTTTTTTTTCAGTTAGATACTTTTTTTTTCTTTTTAAATTTTTGGATATTTTCTGAATAATGTTAACTTGCATTATTGGCCTGCACCTTACCTTTGGGGCCTTTCTTTTGATTATGAATTCGGAGTTTGAAATTAATGAATTTTGAATTTTAGTCTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346072" ref_strand="+" ref_description="SGN-U346072        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam profile PF04759: Protein of unknown function, DUF617; expression supported by MPSS | chr5:2169700-2170485 FORWARD | Aliases: MOJ9.16, MOJ9_16(evalue: 5e-81, score=297) genbank/nr: gi|15240220|ref|NP_196316.1| hypothetical protein [Arabidopsis thaliana] gi|9759555|dbj|BAB11157.1| gb|AAD20416.1~gene_id:MOJ9.16~similar to unknown protein [Arabidopsis thaliana](evalue: 3e-79, score=297)">
      <seq>atcaccaaaaacacttccttctaaaccacgaaatgtggttgctccagatagttcgtcacccaggttacctcctactccagttctattacaacaaccatctcacaaaaagggtcaatggaaatccacaaaactctttcgtcgtgtaaagtcagttttccgttcattccctgtaataaaccctccttgcaaaatgccagtttctaaccgtctgcacgaaggtcatatccatggaggtaaacagatgacaggtactctttttggttttcgaaaagctagagttaatctttcaattcaagagaatccaaggggtgttccattgcttgtacttgaactgtccatacaaacaggtaaactcctccaggatatgggatcaggactagtgagaattgctctcgagtgtgaaaagaatcactcggagaaactcaaactcatcgatgaacctatatggactatgtattgcaatggacgtaaagttgggtatgcagtaaaaagaggacctacagaagatgatcttaaagtaatgcagaatttgcatgctgtatcaatgggagctggcgttctaccatccgagtcctcggagggagaactcacgtatatgagagctttctttgaacgaacagttggatcaaaggactcaaagacgtactatatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="+" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="69505" stop="70759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69805" g_stop="70459" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="+" ref_id="SGN-U346072" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69805" e_stop="70459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCAAAAACACTTCCTTCTAAACCACGAAATGTGGTTGCTCCAGATAGTTCGTCACCCAGGTTACCTCCTACTCCAGTTCTATTACAACAACCATCTCACAAAAAGGGTCAATGGAAATCCACAAAACTCTTTCGTCGTGTAAAGTCAGTTTTCCGTTCATTCCCTGTAATAAACCCTCCTTGCAAAATGCCAGTTTCTAACCGTCTGCACGAAGGTCATATCCATGGAGGTAAACAGATGACAGGTACTCTTTTTGGTTTTCGAAAAGCTAGAGTTAATCTTTCAATTCAAGAGAATCCAAGGGGTGTTCCATTGCTTGTACTTGAACTGTCCATACAAACAGGTAAACTCCTCCAGGATATGGGATCAGGACTAGTGAGAATTGCTCTCGAGTGTGAAAAGAATCACTCGGAGAAACTCAAACTCATCGATGAACCTATATGGACTATGTATTGCAATGGACGTAAAGTTGGGTATGCAGTAAAAAGAGGACCTACAGAAGATGATCTTAAAGTAATGCAGAATTTGCATGCTGTATCAATGGGAGCTGGCGTTCTACCATCCGAGTCCTCGGAGGGAGAACTCACGTATATGAGAGCTTTCTTTGAACGAACAGTTGGATCAAAGGACTCAGAGACGTACTATATGATG</genome_strand>
        <mrna_strand>ATCACCAAAAACACTTCCTTCTAAACCACGAAATGTGGTTGCTCCAGATAGTTCGTCACCCAGGTTACCTCCTACTCCAGTTCTATTACAACAACCATCTCACAAAAAGGGTCAATGGAAATCCACAAAACTCTTTCGTCGTGTAAAGTCAGTTTTCCGTTCATTCCCTGTAATAAACCCTCCTTGCAAAATGCCAGTTTCTAACCGTCTGCACGAAGGTCATATCCATGGAGGTAAACAGATGACAGGTACTCTTTTTGGTTTTCGAAAAGCTAGAGTTAATCTTTCAATTCAAGAGAATCCAAGGGGTGTTCCATTGCTTGTACTTGAACTGTCCATACAAACAGGTAAACTCCTCCAGGATATGGGATCAGGACTAGTGAGAATTGCTCTCGAGTGTGAAAAGAATCACTCGGAGAAACTCAAACTCATCGATGAACCTATATGGACTATGTATTGCAATGGACGTAAAGTTGGGTATGCAGTAAAAAGAGGACCTACAGAAGATGATCTTAAAGTAATGCAGAATTTGCATGCTGTATCAATGGGAGCTGGCGTTCTACCATCCGAGTCCTCGGAGGGAGAACTCACGTATATGAGAGCTTTCTTTGAACGAACAGTTGGATCAAAGGACTCAAAGACGTACTATATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319990" ref_strand="+" ref_description="SGN-U319990        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | metal transporter, putative (ZIP11), similar to putative zinc transporter ZIP2 (Arabidopsis thaliana) gi:3252868:gb:AAC24198; member of the Zinc (Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563 | chr1:20909799-20911078 FORWARD | Aliases: F14J16.16(evalue: 4e-110, score=395) genbank/nr: gi|38036140|gb|AAR08417.1| metal transport protein [Medicago truncatula] (evalue: 6e-120, score=434)">
      <seq>ttttctctctctcatgtcttaatctctttgtcctgcagtactacatcaacttctgcaaatatatttctataaaagtctccaattttttttttcattccaatgattttctctaaacccaaatggcacgtttacacttgtttcttgttctttttcttcttctcattatctccgccgccgcacacggcggagcacacggcggggatcatgacggagatgctgactcagattccgacttatctgaacaatctgacaaaccccatttgagatctcggccattggttttagtgaagatatggtgtttgataatagtcttctttgcgacttttattggtggggtttcaccttatttcatgaaatggaatgaggggtttttggttcttggaacacaatttgctggtggggttttcttgggaactgcgcttatgcattttttaagtgatgctaatgagacttttggggaattgacaagtaaagaatacccttttgcttatatgttggcatgtgctggttatttgatgactatgttagctgattctgttatctgttttgtttatgctaagcagaacaacaacaacaatgatgtgcagctccaagatactgaaaatggaaaaagcaatggagcagtcgcacaggggcagtcacaggtctctgatggcagagaaaatgactattcaaaagcacctcttgcaacagcttcttcacttggtgatagcatcttattgatcgttgcactatgtttccattccgtctttgagggaatagccattggtgttgcagattcacaagccgatgcttggagagctctttggactgtaagtttacacaagatatttgctgctattgcaatgggaatagctctacttaggatgatcccaaatcgccctttactatcatgcgcggcctatgcttttgcctttgccatctctagtccaattggcgttgccatcggaatcataatcgatgccacaactcaaggggttgttgcagactggatctttgcaatatcaatgggattggcttgtggggtttttatatttgtatccattaatcatttgctttctaagggatacaagcctcaaaaaatggtcaagattgacaagcctcatttcaagtttttggctgttttgttaggtgttgggataattgctgtggtgatgatatgggacacttgagtttgtgctttgatgattattttggcagaagtagcataatagtttaccattttatattgagaatacttttgtttaaaaatatttatatacgagagtgaaaagttgtgatttttattcaaatgaaatttttttcaagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="+" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="89293" stop="92279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89593" g_stop="90186" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90187" i_stop="91105" i_length="919">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91106" g_stop="91155" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="644" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91156" i_stop="91306" i_length="151">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91307" g_stop="91981" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="1319" r_length="675" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="+" ref_id="SGN-U319990" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89593" e_stop="90186"/>
          <exon e_start="91106" e_stop="91155"/>
          <exon e_start="91307" e_stop="91981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTCTCTCATGTCTTAATCTCTTTGTCCTGCAGTACTACATCAACTTCTCCAAATATATTTCTATAAAAGTCTCCAATTTTTTTTTTCATTCCAATGATTTTCTCTAAACCCAAATGGCACGTTTACACTTGTTTCTTGTTCTTTTTCTTCTTCTCATTATCTCCGCCGCCGCACACGGCGGAGCACACGGCGGGGATCATGACGGAGATGCTGACTCAGATTCCGACTTATCTGAACAATCTGACAAACCCCATTTGAGATCTCGGCCATTGGTTTTAGTGAAGATATGGTGTTTGATAATAGTCTTCTTTGCGACTTTTATTGGTGGGGTTTCACCTTATTTCATGAAATGGAATGAGGGGTTTTTGGTTCTTGGAACACAATTTGCTGGTGGGGTTTTCTTGGGAACTGCGCTTATGCATTTTTTAAGTGATGCTAATGAGACTTTTGGGGAATTGACAAGTAAAGAATACCCTTTTGCTTATATGTTGGCATGTGCTGGTTATTTGATGACTATGTTAGCTGATTCTGTTATCTGTTTTGTTTATGCTAAGCAGAACAACAACAACAATGATGTGCAGCTCCAAGGTTTGTTGCTTACTATGTGTTGTTTTAGAATTTTGATTGATAAAGATAAAAATCTGAACTTTATACTTTCTGTGCAGCTTTGCTGTATCTGAATTGTAGTTTTGGTAAGAGGAATTAGTTCTGATTTAGTTTTGATATGTAATTCAGCTCGAATGAAGTTAAAGGAAGGCAAAGATGAGAACTTTGAATTATTAGAAAAGAGTAGTAGGCATAATATTACGATAGTCTTGTCCGCTAGCAAATCAATGTTGTAGTAGCTAGCGAAGTTTGTCAAACATATTGGCGTGGACAAGTACTCGAATTTAATCATATTTGTGTTTGGAGTGGTTTTATAGTTCCATTTGCTGTTTGATAGGATATGTTGTTTGTTTGATGCTGAAATATTGAAGAAAGTAAAAAAATTATGTGCTAAACTTTCTTGCTTTTCTAGTTTATTGGAGCTTTTCTTAAAATCTGATACTTTTGTTTCTGAAGCATCTTGCACCTAATTTTGAGTTTGACTGTAGAACTTTTTACTAGCTTCCAAGTTATGTCTAATCTGAGTAGTAGGAGAGTTCCATGGTCGATGATGTTTAAGGCAATGCGAAGTTGAGTTCTGTTTTAGCTTGAGATCAACTGGAAATTTTGTTGATTTCTTTTAGCTTCCCATATCAAGGGAGTTTACTAGAAAAGTGGTTATCTTTTCGAACCATTGTGCTGATTATCCATTTTGCGATAGGGTTTTAAATTATATCCATTGACAATGTGACAAAACGTACTTTTTGATTTACAAACTTCACTTATTAAGGGTAGTAACCTGTAATTACCTTTTAATTGCCTTGATCGTCTAAATTCCTTTGACGCTGTTGTATAGTAGTTAACTTCTTTGGAATATAACACTCTTTGCTGATTCTTCAAATCCATTGTTGTGTTCTAATAGATACTGAAAATGGAAAAAGCAATGGAGCAGTCGCACAGGGGCAGTCACAGGTTAGAGAAGATGTTTTTTTTTTTTAATCTTTTTCCCTCTGATAACTGTCTTGTGTGCTCGGATTCCTTTTATTCTTTAAATCTAATTGGTAGAGAAAAATCCGTTCTTGTTTGAGTGGCTTAATTAGATTTGTCTCGATTACTTTCTCAGGTCTCTGATGGCAGAGAAAATGACTATTCAAAAGCACCTCTTGCAACAGCTTCTTCACTTGGTGATAGCATCTTATTGATCGTTGCACTATGTTTCCATTCCGTCTTTGAGGGAATAGCCATTGGTGTTGCAGATTCACAAGCCGATGCTTGGAGAGCTCTTTGGACTGTAAGTTTACACAAGATATTTGCTGCTATTGCAATGGGAATAGCTCTACTTAGGATGATCCCAAATCGCCCTTTACTATCATGCGCGGCCTATGCTTTTGCCTTTGCCATCTCTAGTCCAATTGGCGTTGCCATCGGAATCATAATCGATGCCACAACTCAAGGGGTTGTTGCAGACTGGATCTTTGCAATATCAATGGGATTGGCTTGTGGGGTTTTTATATTTGTATCCATTAATCATTTGCTTTCTAAGGGATACAAGCCTCAAAAAATGGTCAAGATTGACAAGCCTCATTTCAAGTTTTTGGCTGTTTTGTTAGGTGTTGGGATAATTGCTGTGGTGATGATATGGGACACTTGAGTTTGTGCTTTGATGATTATTTTGGCAGAAGTAGCATAATAGTTTACCATTTTATATTGAGAATACTTTTGTTTAAAAATATTTATATACGAGAGTGAAAAGTTGTGATTCTTATTCAAATGAAATTTTTTTCAAGAATATCAAAGT</genome_strand>
        <mrna_strand>TTTTCTCTCTCTCATGTCTTAATCTCTTTGTCCTGCAGTACTACATCAACTTCTGCAAATATATTTCTATAAAAGTCTCCAATTTTTTTTTTCATTCCAATGATTTTCTCTAAACCCAAATGGCACGTTTACACTTGTTTCTTGTTCTTTTTCTTCTTCTCATTATCTCCGCCGCCGCACACGGCGGAGCACACGGCGGGGATCATGACGGAGATGCTGACTCAGATTCCGACTTATCTGAACAATCTGACAAACCCCATTTGAGATCTCGGCCATTGGTTTTAGTGAAGATATGGTGTTTGATAATAGTCTTCTTTGCGACTTTTATTGGTGGGGTTTCACCTTATTTCATGAAATGGAATGAGGGGTTTTTGGTTCTTGGAACACAATTTGCTGGTGGGGTTTTCTTGGGAACTGCGCTTATGCATTTTTTAAGTGATGCTAATGAGACTTTTGGGGAATTGACAAGTAAAGAATACCCTTTTGCTTATATGTTGGCATGTGCTGGTTATTTGATGACTATGTTAGCTGATTCTGTTATCTGTTTTGTTTATGCTAAGCAGAACAACAACAACAATGATGTGCAGCTCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTGAAAATGGAAAAAGCAATGGAGCAGTCGCACAGGGGCAGTCACAG.......................................................................................................................................................GTCTCTGATGGCAGAGAAAATGACTATTCAAAAGCACCTCTTGCAACAGCTTCTTCACTTGGTGATAGCATCTTATTGATCGTTGCACTATGTTTCCATTCCGTCTTTGAGGGAATAGCCATTGGTGTTGCAGATTCACAAGCCGATGCTTGGAGAGCTCTTTGGACTGTAAGTTTACACAAGATATTTGCTGCTATTGCAATGGGAATAGCTCTACTTAGGATGATCCCAAATCGCCCTTTACTATCATGCGCGGCCTATGCTTTTGCCTTTGCCATCTCTAGTCCAATTGGCGTTGCCATCGGAATCATAATCGATGCCACAACTCAAGGGGTTGTTGCAGACTGGATCTTTGCAATATCAATGGGATTGGCTTGTGGGGTTTTTATATTTGTATCCATTAATCATTTGCTTTCTAAGGGATACAAGCCTCAAAAAATGGTCAAGATTGACAAGCCTCATTTCAAGTTTTTGGCTGTTTTGTTAGGTGTTGGGATAATTGCTGTGGTGATGATATGGGACACTTGAGTTTGTGCTTTGATGATTATTTTGGCAGAAGTAGCATAATAGTTTACCATTTTATATTGAGAATACTTTTGTTTAAAAATATTTATATACGAGAGTGAAAAGTTGTGATTTTTATTCAAATGAAATTTTTTTCAAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328829" ref_strand="+" ref_description="SGN-U328829        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>cagctttgctgtatctgaattgtagttttggtaagaggaattagttctgatttagttttgatatgtaattcagctcgaatgaagttaaaggaaggcaaagatgagaactttgaattattagaaaagagtagtaggcataatattacgatagtcttgtccgctagcaaatcaatgttgtagtagctagcgaagtttgtcaaacatattggcgtggacaagtactcgaatttaatcatatttgtgtttggagtggttttatagttccatttgctgtttgataggatatgttgtttgtttgatgctgaaatattgaagaaagtaaaaaaattatgtgctaaactttcttgcttttctagtttattggagcttttcttaaaatctgatacttttgtttctgaagcatcttgcacctaattttgagtttgactgtagaactttttactagcttccaagttatgtctaatctgagtagtaggagagttccatggtcgatgatgtttaaggcaatgcgaagttgagttctgtttttacttgagatcaactggaaattttgttgttttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="+" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="89961" stop="91123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90261" g_stop="90823" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="+" ref_id="SGN-U328829" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90261" e_stop="90823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTTTGCTGTATCTGAATTGTAGTTTTGGTAAGAGGAATTAGTTCTGATTTAGTTTTGATATGTAATTCAGCTCGAATGAAGTTAAAGGAAGGCAAAGATGAGAACTTTGAATTATTAGAAAAGAGTAGTAGGCATAATATTACGATAGTCTTGTCCGCTAGCAAATCAATGTTGTAGTAGCTAGCGAAGTTTGTCAAACATATTGGCGTGGACAAGTACTCGAATTTAATCATATTTGTGTTTGGAGTGGTTTTATAGTTCCATTTGCTGTTTGATAGGATATGTTGTTTGTTTGATGCTGAAATATTGAAGAAAGTAAAAAAATTATGTGCTAAACTTTCTTGCTTTTCTAGTTTATTGGAGCTTTTCTTAAAATCTGATACTTTTGTTTCTGAAGCATCTTGCACCTAATTTTGAGTTTGACTGTAGAACTTTTTACTAGCTTCCAAGTTATGTCTAATCTGAGTAGTAGGAGAGTTCCATGGTCGATGATGTTTAAGGCAATGCGAAGTTGAGTTCTGTTTTAGCTTGAGATCAACTGGAAATTTTGTTGATTTCTT</genome_strand>
        <mrna_strand>CAGCTTTGCTGTATCTGAATTGTAGTTTTGGTAAGAGGAATTAGTTCTGATTTAGTTTTGATATGTAATTCAGCTCGAATGAAGTTAAAGGAAGGCAAAGATGAGAACTTTGAATTATTAGAAAAGAGTAGTAGGCATAATATTACGATAGTCTTGTCCGCTAGCAAATCAATGTTGTAGTAGCTAGCGAAGTTTGTCAAACATATTGGCGTGGACAAGTACTCGAATTTAATCATATTTGTGTTTGGAGTGGTTTTATAGTTCCATTTGCTGTTTGATAGGATATGTTGTTTGTTTGATGCTGAAATATTGAAGAAAGTAAAAAAATTATGTGCTAAACTTTCTTGCTTTTCTAGTTTATTGGAGCTTTTCTTAAAATCTGATACTTTTGTTTCTGAAGCATCTTGCACCTAATTTTGAGTTTGACTGTAGAACTTTTTACTAGCTTCCAAGTTATGTCTAATCTGAGTAGTAGGAGAGTTCCATGGTCGATGATGTTTAAGGCAATGCGAAGTTGAGTTCTGTTTTTACTTGAGATCAACTGGAAATTTTGTTGTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324642" ref_strand="+" ref_description="SGN-U324642        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT5G55600.1 | Symbol: None | agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein, contains Pfam profile PF01426: BAH domain and PF05641: Agenet domain | chr5:22539075-22542871 REVERSE | Aliases: MDF20.4, MDF20_4 (evalue: 1e-58, score=223) genbank/nr: gi|9758594|dbj|BAB09227.1| gene_id:MDF20.4~unknown protein [Arabidopsis thaliana](evalue: 7e-57, score=223)">
      <seq>gttttttaagcaggaaattttactccaataagcatgttggaagtgagctctggtatgctcctaagttagtggttaacgagaagatagaatgtctgagccaagatagtgggatccgtggctgctggttcagatgcactattgtggaaatatcccggagacagatgaagataaagtatgatgatattaaggatgaagatggatgtggaaaccttgaggaatggatccctacatttagactagccaagcctgataaacttggaatgagaaactctaaccgtccaacaatcaggccttcccgctcttgtgacctggaagatcttgcctttgatgtgggagcacctattgatgcctggtggagtgatggttggtgggaaggaataattgtcgacgcagacaaatcagaaaaggaaacctatagagtttatgttcctggtgagaggatgttcttgaatatagataggaagaatctaagaatctcaagggattgggtgggagatcgatgggtagatatcgagacaaacagagacattctttcaatgatatctttgatccaagaaaccaagatttctgtatcatcaagtattaattcagagcgccagcgagctagtactatggatcataaaattcacgcgagtagtgtggatgaagaagctgctcgtggttctacagaagcaagatcagttgatcaccattcaaaacattcaatcggtgtcaataatgagaagcaagaagatgacattacagaaaagcgactaactgataactcctctagagatatagacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="+" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="97070" stop="98709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97370" g_stop="97584" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97585" i_stop="97748" i_length="164">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97749" g_stop="97965" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="432" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97966" i_stop="98055" i_length="90">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98056" g_stop="98409" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="786" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="+" ref_id="SGN-U324642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97370" e_stop="97584"/>
          <exon e_start="97749" e_stop="97965"/>
          <exon e_start="98056" e_stop="98409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTTAAGCAGGAAATTTTACTCCAATAAGCATGTTGGAAGTGAGCTCTGGTATGCTCCTAAGTTAGTGGTTAACGAGAAGATAGAATGTCTGAGCCAAGATAGTGGGATCCGTGGCTGCTGGTTCAGATGCACTATTGTGGAAATATCCCGGAGACAGATGAAGATAAAGTATGATGATATTAAGGATGAAGATGGATGTGGAAACCTTGAGGTATGCACCAGCACTTTTTCAGGATACTTCATTACATGTTAAAAAACTTCAACTCAGAGAGAAATATGATTTTTTCATTCTGGACCAAGGTGAACTAGAAATTTTGTTAATATTGTTACGTTTTGAAAACTAACATCATTTTTACACATTCATCAATTTTTTAGGAATGGATCCCTACATTTAGACTAGCCAAGCCTGATAAACTTGGAATGAGAAACTCTAACCGTCCAACAATCAGGCCTTCCCGCTCTTGTGACCTGGAAGATCTTGCCTTTGATGTGGGAGCACCTATTGATGCCTGGTGGAGTGATGGTTGGTGGGAAGGAATAATTGTCGACGCAGACAAATCAGAAAAGGAAACCTATAGAGTTTATGTTCCTGGTGAGTTTTGTTTTTCAATATTGTTGCTAGTGCTAAGCAAACATTTTCCTTGGTTTTCTTCATAAACTATTTCTCCGCTTTTGTTATCAGGTGAGAGGATGTTCTTGAATATAGATAGGAAGAATCTAAGAATCTCAAGGGATTGGGTGGGAGATCGATGGGTAGATATCGAGACAAACAGAGACATTCTTTCAATGATATCTTTGATCCAAGAAACCAAGATTTCTGTATCATCAAGTATTAATTCAGAGCGCCAGCGAGCTAGTACTATGGATCATAAAATTCACGCGAGTAGTGTGGATGAAGAAGCTGCTCGTGGTTCTACAGAAGCAAGATCAGTTGATCACCATTCAAAACATTCAATCGGTGTCAATAATGAGAAGCAAGAAGATGACATTACAGAAAAGCGACTAACTGATAACTCCTCTAGAGATATAGACTTGA</genome_strand>
        <mrna_strand>GTTTTTTAAGCAGGAAATTTTACTCCAATAAGCATGTTGGAAGTGAGCTCTGGTATGCTCCTAAGTTAGTGGTTAACGAGAAGATAGAATGTCTGAGCCAAGATAGTGGGATCCGTGGCTGCTGGTTCAGATGCACTATTGTGGAAATATCCCGGAGACAGATGAAGATAAAGTATGATGATATTAAGGATGAAGATGGATGTGGAAACCTTGAG....................................................................................................................................................................GAATGGATCCCTACATTTAGACTAGCCAAGCCTGATAAACTTGGAATGAGAAACTCTAACCGTCCAACAATCAGGCCTTCCCGCTCTTGTGACCTGGAAGATCTTGCCTTTGATGTGGGAGCACCTATTGATGCCTGGTGGAGTGATGGTTGGTGGGAAGGAATAATTGTCGACGCAGACAAATCAGAAAAGGAAACCTATAGAGTTTATGTTCCTG..........................................................................................GTGAGAGGATGTTCTTGAATATAGATAGGAAGAATCTAAGAATCTCAAGGGATTGGGTGGGAGATCGATGGGTAGATATCGAGACAAACAGAGACATTCTTTCAATGATATCTTTGATCCAAGAAACCAAGATTTCTGTATCATCAAGTATTAATTCAGAGCGCCAGCGAGCTAGTACTATGGATCATAAAATTCACGCGAGTAGTGTGGATGAAGAAGCTGCTCGTGGTTCTACAGAAGCAAGATCAGTTGATCACCATTCAAAACATTCAATCGGTGTCAATAATGAGAAGCAAGAAGATGACATTACAGAAAAGCGACTAACTGATAACTCCTCTAGAGATATAGACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324494" ref_strand="+" ref_description="SGN-U324494        Tomato 200607 #1 [5 ESTs aligned]">
      <seq>tttttttttttttttttgtgtctcaatgatttcaccataaaatactgcatttacaacatgcaaggttcatagtatgtatctgtctattacactgtgcgcaacacacttgcaaaacaatttgactcgatagaggaacgttacagatattgtagaagatcctagtaattagagagtttataatttgctaaagcatctccagattctaatgaagtagtgggaactaatgataacctgtacacctaagacactcgatccctaacactacgagcaaacctcattcgatttccatctctatgtacagttgaacagcatcagtacctggcaacaaactggaatctgtttcggtggtaatacatcacgccactatatccattacttctgtctcgcatttccccccatcaatctcaggttctgatgatttttccacattgctgtccttgtcaatatccgtgttgtaagaatcattatcatcgctaagttggcagtctaagtcatgcttgtcgctgccactgctgctgctgttattacaatcattctcatcggatttgttttcagttgcgtgcttctcatccttaatcaagtctatatctctagaggagttatcagttagtcgcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="-" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="137714" stop="98067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98985" g_stop="98367" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="-" ref_id="SGN-U324494" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98985" e_stop="98367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCTAAAGCGATATTGTGTCTCAATGATTTCACCATAAAATACTGCATTTACAACATGCAAGGTTCATAGTATGTATCTGTCTATTACACTGTGCGCAACACACTTGCAAAACAATTTGACTCGATAGAGGAACGTTACAGATATTGTAGAAGATCCTAGTAATTAGAGAGTTTATAATTTGCTAAAGCATCTCCAGATTCTAATGAAGTAGTGGGAACTAATGATAACCTGTACACCTAAGACACTCGATCCCTAACACTACGAGCAAACCTCATTCGATTTCCATCTCTATGTACAGTTGAACAGCATCAGTACCTGGCAACAAACTGGAATCTGTTTCGGTGGTAATACATCACGCCACTATATCCATTACTTCTGTCTCGCATTTCCCCCCATCAATCTCAGGTTCTGATGATTTTTCCACATTGCTGTCCTTGTCAATATCCGTGTTGTAAGAATCATTATCATCGCTAAGTTGGCAGTCTAAGTCATGCTTGTCGCTGCCACTGCTGCTGCTGTTATTACAATCATTCTCATCGGATTTGTTTTCAGTTGCGTGCTTCTCATCCTTAATCAAGTCTATATCTCTAGAGGAGTTATCAGTTAGTCGCTTTTC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTGTGTCTCAATGATTTCACCATAAAATACTGCATTTACAACATGCAAGGTTCATAGTATGTATCTGTCTATTACACTGTGCGCAACACACTTGCAAAACAATTTGACTCGATAGAGGAACGTTACAGATATTGTAGAAGATCCTAGTAATTAGAGAGTTTATAATTTGCTAAAGCATCTCCAGATTCTAATGAAGTAGTGGGAACTAATGATAACCTGTACACCTAAGACACTCGATCCCTAACACTACGAGCAAACCTCATTCGATTTCCATCTCTATGTACAGTTGAACAGCATCAGTACCTGGCAACAAACTGGAATCTGTTTCGGTGGTAATACATCACGCCACTATATCCATTACTTCTGTCTCGCATTTCCCCCCATCAATCTCAGGTTCTGATGATTTTTCCACATTGCTGTCCTTGTCAATATCCGTGTTGTAAGAATCATTATCATCGCTAAGTTGGCAGTCTAAGTCATGCTTGTCGCTGCCACTGCTGCTGCTGTTATTACAATCATTCTCATCGGATTTGTTTTCAGTTGCGTGCTTCTCATCCTTAATCAAGTCTATATCTCTAGAGGAGTTATCAGTTAGTCGCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315912" ref_strand="+" ref_description="SGN-U315912        Tomato 200607 #1 [32 ESTs aligned] arabidopsis/peptide: | Symbol: None | serine O-acetyltransferase (SAT-1), identical to serine acetyltransferase (Sat-1) GI:1184048 (Arabidopsis thaliana) | chr3:4214624-4216309 REVERSE | Aliases: MJG19.1(evalue: 5e-128, score=454) genbank/nr: gi|38350581|gb|AAR18403.1| serine acetyltransferase [Nicotiana plumbaginifolia](evalue: 8e-164, score=580)">
      <seq>ttctatgtacctcgagttttatcggatcatcattccctctaataccactttattctcctaacaattccttcaagttttcatctttaacaatggccgcttgtattcacgcttcaagaaccaaaaatccaccaaaaaacccactttctcgtgacccaaacaagccacaaatcgataaccatgtctacaattacgtcaaatactgccgacccactttccctgaccttgtttcctgcaaacccttttcagaaaaaagctcgaaaatcgaggaattgggagatgagttatggctgaaaatgaaagaggaagctaggtcagatattgaccaagaaccaattttgtctagttattacgtttcttcaattctagctcatgaatccatggagagagctttagctaatcatctttctatgaaattgggtaatcctaatcttcctagtactactttgtttgatttatttattggggtgttaacagaagaaacagatataattaaatctgttaaagctgatttaagagctgttaaagaaagggaccctgcttgtattagttacgtacactgtttcttgaattttaaagggtttttagcttgtcaagctcatagaattgcacataaattatggtctaaagggaggcaaattcttgctctgttaatacaaaacagagtatctgaagtttttgctgttgatattcatcctggtgctaaaattggtaaagggattttacttgatcatgctactggtgttgttgttggtgaaactgctgtaattgggaacaatgtttcgattttgcataatgtaacattaggtggcactggtaaagcatgtggggatagacaccctaagattggtgatggtgttttgattggtgctggaacttgtgttcttggaaatgttagaattggagatggggctaagattggggcagggtctgttgtgttgaaggaagttccggcgaggacaaccgctgttgggaatccggcgaggttgctaggagggaaggagaatccaaagagacttgataagatacctagtttcactatggatcatacttcacatatatcagagtggtctgattatgtaatataaagttgacagctttgagttttgtttactattgttttaaatttatatttgattagttaaaagctacgttgctcggactctcttaaaatgctgttaggacacggaccgagcatttttgaagaatttaagcaacgtaggtgaaaaggtcttcgggaattttagttttagggagaatccaagttctcttaaatgcagagatgttgtaacatatacctttaatggtaactggtttatagatttaagagattactgtactagtttacttgatatagcaaatagttcagtgttggatgaattatcatcatgttgctatatgtctcataggagttattgcttaagttcaaatgaggacaagttttgtgagttcaattgaacctattgctttcgactcgaactatgtgtacatattataaaataattgaaatgtatacatgtaacttattgttacttggcagttggcatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="+" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="112134" stop="114279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112434" g_stop="113978" g_length="1545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1546" r_length="1546" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1547" polyA_stop="1557"/>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="+" ref_id="SGN-U315912" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1545</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112434" e_stop="113978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATGTA-CTCGAGTTTTATCGGATCATCATTCCCTCTAATACCACTTTATTCTCCTAACAATTCCTTCAAGTTTTCATCTTTAACAATGGCCGCTTGTATTCACGCTTCAAGAACCAAAAATCCACCAAAAAACCCACTTTCTCGTGACCCAAACAAGCCACAAATCGATAACCATGTCTACAATTACGTCAAATACTGCCGACCCACTTTCCCTGACCTTGTTTCCTGCAAACCCTTTTCAGAAAAAAGCTCGAAAATCGAGGAATTGGGAGATGAGTTATGGCTGAAAATGAAAGAGGAAGCTAGGTCAGATATTGACCAAGAACCAATTTTGTCTAGTTATTACGTTTCTTCAATTCTAGCTCATGAATCCATGGAGAGAGCTTTAGCTAATCATCTTTCTATGAAATTGGGTAATCCTAATCTTCCTAGTACTACTTTGTTTGATTTATTTATTGGGGTGTTAACAGAAGAAACAGATATAATTAAATCTGTTAAAGCTGATTTAAGAGCTGTTAAAGAAAGGGACCCTGCTTGTATTAGTTACGTACACTGTTTCTTGAATTTTAAAGGGTTTTTAGCTTGTCAAGCTCATAGAATTGCACATAAATTATGGTCTAAAGGGAGGCAAATTCTTGCTCTGTTAATACAAAACAGAGTATCTGAAGTTTTTGCTGTTGATATTCATCCTGGTGCTAAAATTGGTAAAGGGATTTTACTTGATCATGCTACTGGTGTTGTTGTTGGTGAAACTGCTGTAATTGGGAACAATGTTTCGATTTTGCATAATGTAACATTAGGTGGCACTGGTAAAGCATGTGGGGATAGACACCCTAAGATTGGTGATGGTGTTTTGATTGGTGCTGGAACTTGTGTTCTTGGAAATGTTAGAATTGGAGATGGGGCTAAGATTGGGGCAGGGTCTGTTGTGTTGAAGGAAGTTCCGGCGAGGACAACCGCTGTTGGGAATCCGGCGAGGTTGCTAGGAGGGAAGGAGAATCCAAAGAGACTTGATAAGATACCTAGTTTCACTATGGATCATACTTCACATATATCAGAGTGGTCTGATTATGTAATATAAAGTTGACAGCTTTGAGTTTTGTTTACTATTGTTTTAAATTTATATTTGATTAGTTAAAAGCTACGTTGCTCGGACTCTCTTAAAATGCTGTTAGGACACGGACCGAGCATTTTTGAAGAATTTAAGCAACGTAGGTGAAAAGGTCTTCGGGAATTTTAGTTTTAGGGAGAATCCAAGTTCTCTTAAATGCAGAGATGTTGTAACATATACCTTTAATGGTAACTGGTTTATAGATTTAAGAGATTACTGTACTAGTTTACTTGATATAGCAAATAGTTCAGTGTTGGATGAATTATCATCATGTTGCTATATGTCTCATAGGAGTTATTGCTTAAGTTCAAATGAGGACAAGTTTTGTGAGTTCAATTGAACCTATTGCTTTCGACTCGAACTATGTGTACATATTATAAAATAATTGAAATGTATACATGTAACTTATTGTTACTTGGCAGTTGGCATCT</genome_strand>
        <mrna_strand>TTCTATGTACCTCGAGTTTTATCGGATCATCATTCCCTCTAATACCACTTTATTCTCCTAACAATTCCTTCAAGTTTTCATCTTTAACAATGGCCGCTTGTATTCACGCTTCAAGAACCAAAAATCCACCAAAAAACCCACTTTCTCGTGACCCAAACAAGCCACAAATCGATAACCATGTCTACAATTACGTCAAATACTGCCGACCCACTTTCCCTGACCTTGTTTCCTGCAAACCCTTTTCAGAAAAAAGCTCGAAAATCGAGGAATTGGGAGATGAGTTATGGCTGAAAATGAAAGAGGAAGCTAGGTCAGATATTGACCAAGAACCAATTTTGTCTAGTTATTACGTTTCTTCAATTCTAGCTCATGAATCCATGGAGAGAGCTTTAGCTAATCATCTTTCTATGAAATTGGGTAATCCTAATCTTCCTAGTACTACTTTGTTTGATTTATTTATTGGGGTGTTAACAGAAGAAACAGATATAATTAAATCTGTTAAAGCTGATTTAAGAGCTGTTAAAGAAAGGGACCCTGCTTGTATTAGTTACGTACACTGTTTCTTGAATTTTAAAGGGTTTTTAGCTTGTCAAGCTCATAGAATTGCACATAAATTATGGTCTAAAGGGAGGCAAATTCTTGCTCTGTTAATACAAAACAGAGTATCTGAAGTTTTTGCTGTTGATATTCATCCTGGTGCTAAAATTGGTAAAGGGATTTTACTTGATCATGCTACTGGTGTTGTTGTTGGTGAAACTGCTGTAATTGGGAACAATGTTTCGATTTTGCATAATGTAACATTAGGTGGCACTGGTAAAGCATGTGGGGATAGACACCCTAAGATTGGTGATGGTGTTTTGATTGGTGCTGGAACTTGTGTTCTTGGAAATGTTAGAATTGGAGATGGGGCTAAGATTGGGGCAGGGTCTGTTGTGTTGAAGGAAGTTCCGGCGAGGACAACCGCTGTTGGGAATCCGGCGAGGTTGCTAGGAGGGAAGGAGAATCCAAAGAGACTTGATAAGATACCTAGTTTCACTATGGATCATACTTCACATATATCAGAGTGGTCTGATTATGTAATATAAAGTTGACAGCTTTGAGTTTTGTTTACTATTGTTTTAAATTTATATTTGATTAGTTAAAAGCTACGTTGCTCGGACTCTCTTAAAATGCTGTTAGGACACGGACCGAGCATTTTTGAAGAATTTAAGCAACGTAGGTGAAAAGGTCTTCGGGAATTTTAGTTTTAGGGAGAATCCAAGTTCTCTTAAATGCAGAGATGTTGTAACATATACCTTTAATGGTAACTGGTTTATAGATTTAAGAGATTACTGTACTAGTTTACTTGATATAGCAAATAGTTCAGTGTTGGATGAATTATCATCATGTTGCTATATGTCTCATAGGAGTTATTGCTTAAGTTCAAATGAGGACAAGTTTTGTGAGTTCAATTGAACCTATTGCTTTCGACTCGAACTATGTGTACATATTATAAAATAATTGAAATGTATACATGTAACTTATTGTTACTTGGCAGTTGGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324888" ref_strand="+" ref_description="SGN-U324888        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT5G61750.1 | Symbol: None | cupin family protein, similar to germin-like protein from Mesembryanthemum crystallinum, PIR:T12426 (SP:P45852), rhicadhesin receptor precursor (Germin-like protein) from Pisum sativum (SP:Q9S8P4); contains Pfam profile PF00190: Cupin | chr5:24830030-24830662 REVERSE | Aliases: MAC9.10, MAC9_10 (evalue: 7e-54, score=207) genbank/nr: gi|77551291|gb|ABA94088.1| germin-like protein subfamily 3 member 4 precursor, putative [Oryza sativa (japonica cultivar-group)] (evalue: 5e-53, score=211)">
      <seq>ttatttaggagagtgacatttaaccatactgataattattggacatcttttcttaatgatttagtgaattgaactccaagtttttggttattacttcacactaatgcaatcaagaactaatttgtgcatttatatatatggaatatttaataaagatgtaaacaacttaacattgacaataacaatgataatgaagattagtttcttcttagcattttcattttacatttgtctatgcaggggaaaagatagtgataatctctatgatgtttgtcctaccgatgcaacgcgtaagaacgtcttcataaacggctatccatgcaagaatccagcacaaattactgcttctgatttcaaaagctctggtttgagcaaggaaggtgacacggataactttcaacgttcatcgacaacattagtcactgctgcagaatttgcaggactcaacactctcgggttatctgttgccaggactgacctggatgtagatggcgtgataatgccacatgctcatccacgagcttccgagatgatgtttgttggcaaaggagtggtgattgctggatttatcgacacgaaaagccaagtgttccaaaagactcttaaacaaggtgatgtgtttattgtccccagaggacttctacattataacttgaattcggggttcgaattagccactgtgtactcagtgctgagcagccagaatcctggtatgttgagtatatcagatgcaatgtttgcaccagttgtttcggaacccatgagagacctgatgaagaagttgttttcgcgttcaaacttgggaacaaaccagattaaaaatgtaacatcgtttcgttattaaacttcattcataactttgagcattttcgtttttaatataactcgtgccaaatatttaaaaaaaaaaagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="+" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="114679" stop="116443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114979" g_stop="115474" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115475" i_stop="115733" i_length="259">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115734" g_stop="116137" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="900" r_length="404" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="901" polyA_stop="928"/>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="+" ref_id="SGN-U324888" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114979" e_stop="115474"/>
          <exon e_start="115734" e_stop="116137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTAGGAGAGTGACATTTAACCATACTGATAATTATTGGACATCTTTTCTTAATGATTTAGTGAATTGAACTCCAAGTTTTTGGTTATTACTTCACACTAATGCAATCAAGAACTAATTTGTGCATTTATATATATGGAATATTTAATAAAGATGTAAACAACTTAACATTGACAATAACAATGATAATGAAGATTAGTTTCTTCTTAGCATTTTCATTTTACATTTGTCTATGCAGGGGAAAAGATAGTGATAATCTCTATGATGTTTGTCCTACCGATGCAACGCGTAAGAACGTCTTCATAAACGGCTATCCATGCAAGAATCCAGCACAAATTACTGCTTCTGATTTCAAAAGCTCTGGTTTGAGCAAGGAAGGTGACACGGATAACTTTCAACGTTCATCGACAACATTAGTCACTGCTGCAGAATTTGCAGGACTCAACACTCTCGGGTTATCTGTTGCCAGGACTGACCTGGATGTAGATGGCGTGGTAATGTTTAATCTTATCTCGTCTAAATGTTTAAACTCCATATACCCCTCGTGCCTGCTACTGTACCATATTGTTTGAATTGTGTGATTGTCTAAACGTGTAAGCGGTTAGAAAGAGCACACTTTGTTCTTTAGTTACTTGCTGATATTGTGTCTATGCGCCCCTCTTACCTGCTCTGATACCATATTTGTTGAATTGTGTGAATCATTTCATTACAGCTTACGTTCTTTTGGCTGCTTATTATACTATGTTTCTGCAGATAATGCCACATGCTCATCCACGAGCTTCCGAGATGATGTTTGTTGGCAAAGGAGTGGTGATTGCTGGATTTATCGACACGAAAAGCCAAGTGTTCCAAAAGACTCTTAAACAAGGTGATGTGTTTATTGTCCCCAGAGGACTTCTACATTATAACTTGAATTCGGGGTTCGAATTAGCCACTGTGTACTCAGTGCTGAGCAGCCAGAATCCTGGTATGTTGAGTATATCAGATGCAATGTTTGCACCAGTTGTTTCGGAACCCATGAGAGACCTGATGAAGAAGTTGTTTTCGCGTTCAAACTTGGGAACAAACCAGATTAAAAATGTAACATCGTTTCGTTATTAAACTTCATTCATAACTTTGAGCATTTCCGTTTCTAATATAACTCGTGCCAAATATTT</genome_strand>
        <mrna_strand>TTATTTAGGAGAGTGACATTTAACCATACTGATAATTATTGGACATCTTTTCTTAATGATTTAGTGAATTGAACTCCAAGTTTTTGGTTATTACTTCACACTAATGCAATCAAGAACTAATTTGTGCATTTATATATATGGAATATTTAATAAAGATGTAAACAACTTAACATTGACAATAACAATGATAATGAAGATTAGTTTCTTCTTAGCATTTTCATTTTACATTTGTCTATGCAGGGGAAAAGATAGTGATAATCTCTATGATGTTTGTCCTACCGATGCAACGCGTAAGAACGTCTTCATAAACGGCTATCCATGCAAGAATCCAGCACAAATTACTGCTTCTGATTTCAAAAGCTCTGGTTTGAGCAAGGAAGGTGACACGGATAACTTTCAACGTTCATCGACAACATTAGTCACTGCTGCAGAATTTGCAGGACTCAACACTCTCGGGTTATCTGTTGCCAGGACTGACCTGGATGTAGATGGCGTG...................................................................................................................................................................................................................................................................ATAATGCCACATGCTCATCCACGAGCTTCCGAGATGATGTTTGTTGGCAAAGGAGTGGTGATTGCTGGATTTATCGACACGAAAAGCCAAGTGTTCCAAAAGACTCTTAAACAAGGTGATGTGTTTATTGTCCCCAGAGGACTTCTACATTATAACTTGAATTCGGGGTTCGAATTAGCCACTGTGTACTCAGTGCTGAGCAGCCAGAATCCTGGTATGTTGAGTATATCAGATGCAATGTTTGCACCAGTTGTTTCGGAACCCATGAGAGACCTGATGAAGAAGTTGTTTTCGCGTTCAAACTTGGGAACAAACCAGATTAAAAATGTAACATCGTTTCGTTATTAAACTTCATTCATAACTTTGAGCATTTTCGTTTTTAATATAACTCGTGCCAAATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346735" ref_strand="+" ref_description="SGN-U346735        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | ABC transporter family protein, almost identical to MRP-like ABC transporter GI:2316016 from (Arabidopsis thaliana); contains Pfam profile: PF00005 ABC transporter | chr3:4195793-4201272 REVERSE | Aliases: MJG19.26(evalue: 1e-84, score=287) genbank/nr: gi|42733544|dbj|BAD11207.1| multidrug resistance-associated protein [Thlaspi caerulescens] (evalue: 4e-83, score=288)">
      <seq>atcattgcagtaatgtcacaagtcgcatggcagatcttcatagtctttatcccagtcattgcaatttgcatttggttggagcaatattacatccctgcagcacgagaactggcacgtctaaatgggacatgcaaagctccagtaatacagcattttgctgaaacaatttcaggatcaagcacaattcgaagtttcgatcaagaatctagattccaggatgcaagcatgagattaatagacaattattctcggcctaagtttcacacagctgctgcgatggagtggctttgcatgcgtttggatatgttatctctgattacttttgctttcgcgttgattttcttgatctctcttcctgttggaacaatcgatccaagtgttgctggcttagctgttacatatggacttaatctaaacgtactgcaagcttgggttgtatggaatctttgtatgatggaaaataaaattatttccgtcgaaagaatacttcagtatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="+" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="124620" stop="125921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124920" g_stop="125000" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125001" i_stop="125100" i_length="100">
            <donor d_prob="0.847" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125101" g_stop="125395" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="376" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125396" i_stop="125498" i_length="103">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125499" g_stop="125621" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="499" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="+" ref_id="SGN-U346735" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124920" e_stop="125000"/>
          <exon e_start="125101" e_stop="125395"/>
          <exon e_start="125499" e_stop="125621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTGCAGTAATGTCACAAGTCGCATGGCAGATCTTCATAGTCTTTATCCCAGTCATTGCAATTTGCATTTGGTTGGAGGTTGCTACTTTGCTTTTTTCTATTCTCTGAATTTTATTACTTTAGTGGCGTATGTGAACATGAATTATATAATTAAGTGGTGTGTTTTGTTTAATTGCAGCAATATTACATCCCTGCAGCACGAGAACTGGCACGTCTAAATGGGACATGCAAAGCTCCAGTAATACAGCATTTTGCTGAAACAATTTCAGGATCAAGCACAATTCGAAGTTTCGATCAAGAATCTAGATTCCAGGATGCAAGCATGAGATTAATAGACAATTATTCTCGGCCTAAGTTTCACACAGCTGCTGCGATGGAGTGGCTTTGCATGCGTTTGGATATGTTATCTCTGATTACTTTTGCTTTCGCGTTGATTTTCTTGATCTCTCTTCCTGTTGGAACAATCGATCCAAGTGAGTGCTCTATCTTCATCAGGTTTTCATTCCATCAAATTTGTTAAATAGTTCTAAAGAGTACAATCTCACCTATGTTTTCACCTTGTTCCTGCCCTTACAGGTGTTGCTGGCTTAGCTGTTACATATGGACTTAATCTAAACGTACTGCAAGCTTGGGTTGTATGGAATCTTTGTATGATGGAAAATAAAATTATTTCCGTCGAAAGAATACTTCAGTATGCTG</genome_strand>
        <mrna_strand>ATCATTGCAGTAATGTCACAAGTCGCATGGCAGATCTTCATAGTCTTTATCCCAGTCATTGCAATTTGCATTTGGTTGGAG....................................................................................................CAATATTACATCCCTGCAGCACGAGAACTGGCACGTCTAAATGGGACATGCAAAGCTCCAGTAATACAGCATTTTGCTGAAACAATTTCAGGATCAAGCACAATTCGAAGTTTCGATCAAGAATCTAGATTCCAGGATGCAAGCATGAGATTAATAGACAATTATTCTCGGCCTAAGTTTCACACAGCTGCTGCGATGGAGTGGCTTTGCATGCGTTTGGATATGTTATCTCTGATTACTTTTGCTTTCGCGTTGATTTTCTTGATCTCTCTTCCTGTTGGAACAATCGATCCAA.......................................................................................................GTGTTGCTGGCTTAGCTGTTACATATGGACTTAATCTAAACGTACTGCAAGCTTGGGTTGTATGGAATCTTTGTATGATGGAAAATAAAATTATTTCCGTCGAAAGAATACTTCAGTATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322078" ref_strand="+" ref_description="SGN-U322078        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | ABC transporter family protein, almost identical to MRP-like ABC transporter GI:2316016 from (Arabidopsis thaliana); contains Pfam profile: PF00005 ABC transporter | chr3:4195793-4201272 REVERSE | Aliases: MJG19.26(evalue: 8e-110, score=394) genbank/nr: gi|15230686|ref|NP_187915.1| ABC transporter family protein [Arabidopsis thaliana] gi|10172595|dbj|BAB01399.1| multidrug resistance-associated protein (MRP); ABC-transoprter [Arabidopsis thaliana](evalue: 6e-108, score=394)">
      <seq>ccatctcgtggagaggttgagttcaacaatcttcaggtccgatatgctccacacatgcctctcgtgttacgaggacttacatgcactttctttggtgggaagaagactggaattgttggtaggacaggcagtggtaaatcaactttaatacagacccttttccgcatagttgatcctgttgttggacaaataaagatagatggtaccaacatctccacaattggtctgcatgatctgcggtctagattgagtatcattccgcaggatccgactatgtttgagggaactgtacgcagcaacctagatccgctcgaagagcattcagatgatcaaatttgggaggcgctggacaaatgtcaactaggagacgaagttaggaagaaggaaggcaagctatattctacagtatctgagaatggagagaactggagcgtaggccaaaggcagctggtctgtcttggccgcgtgctactcaaaaaaagcaaggtccttgtcctagacgaggctacagcatctgttgacactgcaactgacaatctaattcagcaaactctgaggctgcacttcactgattccactgttataaccatcgctcataggataacatctgttcttgatagtgacatggtcctactattagaacacgggctgattgctgaatatgacactccaggcaagttattagagaacgaatcctcgttgtttgccaagctcgtggctgagtatagtatgagatcaaattcaagttttgagaatgcctcagacacatgaatctttcattgaccacgttatacgatgatgatgatgaaaactagtacacatgaatctcagacactaacactcttttgagtttccatccgtggacgatagagcttgaacaagaacccgcgaaatgcagctcattgcatgtgacttgagggaaactgcaacaatcttatggcagtgaaagaagttcatctatttgtgcaatattgatagtgaaatggcatctgttttctttagactttttgatgtgaaaaaatgttttaagtatttgtttaccaataatttgaatgtatgttgagtcaattgattagttagttaagagtgcacggattttgttccttattgtaaaagtagtaaaactttttgtattgagttggaagtgaacttacaagtgttagaattttctctacaagcaaaactgaaatactttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="+" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="125378" stop="127524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125678" g_stop="125713" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125714" i_stop="125802" i_length="89">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125803" g_stop="126108" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="342" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126109" i_stop="126204" i_length="96">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126205" g_stop="126268" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="406" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126269" i_stop="126350" i_length="82">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126351" g_stop="126590" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="646" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126591" i_stop="126672" i_length="82">
            <donor d_prob="0.582" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="126673" g_stop="127224" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="1197" r_length="551" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="+" ref_id="SGN-U322078" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1198</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125678" e_stop="125713"/>
          <exon e_start="125803" e_stop="126108"/>
          <exon e_start="126205" e_stop="126268"/>
          <exon e_start="126351" e_stop="126590"/>
          <exon e_start="126673" e_stop="127224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCTCGTGGAGAGGTTGAGTTCAACAATCTTCAGGTAAATTGAGTTGTTCTCTGGTATTATGCAGGTAGAGTGCATTATTGTTGATTCATTGTATGTGTTGATAAATCTGAAAAATTTTATAGGTCCGATATGCTCCACACATGCCTCTCGTGTTACGAGGACTTACATGCACTTTCTTTGGTGGGAAGAAGACTGGAATTGTTGGTAGGACAGGCAGTGGTAAATCAACTTTAATACAGACCCTTTTCCGCATAGTTGATCCTGTTGTTGGACAAATAAAGATAGATGGTACCAACATCTCCACAATTGGTCTGCATGATCTGCGGTCTAGATTGAGTATCATTCCGCAGGATCCGACTATGTTTGAGGGAACTGTACGCAGCAACCTAGATCCGCTCGAAGAGCATTCAGATGATCAAATTTGGGAGGTAACAGCTTAGTTTGCCTATTTCTAGAATTTTGGTTTCACATTGGAAAATGAAACTTTTATGTATTGAGAAACTTTATTCAATTTTATGTTTCAGGCGCTGGACAAATGTCAACTAGGAGACGAAGTTAGGAAGAAGGAAGGCAAGCTATATTCTACAGGTTAGAACCACATCATGTTCCGATGATTTCCACATTTAAAGCTGTGACACTTATAATGCTTATATTCTTTGGATTGCTGCAGTATCTGAGAATGGAGAGAACTGGAGCGTAGGCCAAAGGCAGCTGGTCTGTCTTGGCCGCGTGCTACTCAAAAAAAGCAAGGTCCTTGTCCTAGACGAGGCTACAGCATCTGTTGACACTGCAACTGACAATCTAATTCAGCAAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACGGTATGAATCAACATTTGCATTTTTTGAACAAACGGAGGTGGAAATTCTTGGTATTTACTTTCTTTTGTTTGCTATACTACAGGGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGTGAAAAAATGTTTTAAGTATTTGTTTACCAATAATTTGAATGTATGTTGAGTCAATTGATTAGTTAGTTAAGAGTGCACGGATTTTGTTCCTTATTGTAAAAGTAGTAAAACTTTTTGTATTGAGTTGGAAGTGAACTTACAAGTGTTTGAATTTTTCTCTACAAGCAAAACTGAAATACTTTTA</genome_strand>
        <mrna_strand>CCATCTCGTGGAGAGGTTGAGTTCAACAATCTTCAG.........................................................................................GTCCGATATGCTCCACACATGCCTCTCGTGTTACGAGGACTTACATGCACTTTCTTTGGTGGGAAGAAGACTGGAATTGTTGGTAGGACAGGCAGTGGTAAATCAACTTTAATACAGACCCTTTTCCGCATAGTTGATCCTGTTGTTGGACAAATAAAGATAGATGGTACCAACATCTCCACAATTGGTCTGCATGATCTGCGGTCTAGATTGAGTATCATTCCGCAGGATCCGACTATGTTTGAGGGAACTGTACGCAGCAACCTAGATCCGCTCGAAGAGCATTCAGATGATCAAATTTGGGAG................................................................................................GCGCTGGACAAATGTCAACTAGGAGACGAAGTTAGGAAGAAGGAAGGCAAGCTATATTCTACAG..................................................................................TATCTGAGAATGGAGAGAACTGGAGCGTAGGCCAAAGGCAGCTGGTCTGTCTTGGCCGCGTGCTACTCAAAAAAAGCAAGGTCCTTGTCCTAGACGAGGCTACAGCATCTGTTGACACTGCAACTGACAATCTAATTCAGCAAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACG..................................................................................GGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGTGAAAAAATGTTTTAAGTATTTGTTTACCAATAATTTGAATGTATGTTGAGTCAATTGATTAGTTAGTTAAGAGTGCACGGATTTTGTTCCTTATTGTAAAAGTAGTAAAACTTTTTGTATTGAGTTGGAAGTGAACTTACAAGTGTTAGAA-TTTTCTCTACAAGCAAAACTGAAATACTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331538" ref_strand="+" ref_description="SGN-U331538        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | CBS domain-containing protein / transporter associated domain-containing protein, similar to SP:Q54318 Hemolysin C (Serpulina hyodysenteriae) {Treponema hyodysenteriae}; contains Pfam profiles PF00571: CBS domain, PF03471: Transporter associated domain, PF01595: Domain of unknown function | chr3:4191518-4195119 REVERSE | Aliases: MJG19.2(evalue: 1e-109, score=392) genbank/nr: gi|15230685|ref|NP_187914.1| hemolysin-related [Arabidopsis thaliana] gi|10172594|dbj|BAB01398.1| unnamed protein product [Arabidopsis thaliana](evalue: 7e-108, score=392)">
      <seq>ggaatgctaaaactcctcggcttgaaaggaagaagtgaaccatatgtcactgaggatgaattgaagttgatgctgcgtggggcggagttaagtggcgcaattgaggaggaagagcaggatatgattgaaaatgtgttggagattaaagacactcatgtcagggaggtaatgacacctcttgttgatgttgttgcaatcgatgccagtgcaacgttagttgatttccatagtttgtgggtgacacatcagtactccagggtgcccgtttttgagcaacgtatagataatattgttggcattgcatatgccatggatctcctagattatgtacaaaagggagaactgctggaaagttctattgtgggagacattgcacataaacctgcatactttgttcccgattctatgtcagtgtggaaccttcttagagagttccgcatcagaaaggtacacatggctgttgctcttaatgaatatggaggaaccataggaattgtaacccttgaagatgtggtcgaggaaattgttggcgaaatctttgacgaaaatgattcataagaggaaatccacaaaatgactggctatattgtcatgcgggctgaaggaatatacgatgttgatgcacatacctccattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-VYUmq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="+" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="130360" stop="135379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130660" g_stop="130694" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130695" i_stop="131785" i_length="1091">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131786" g_stop="131867" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="117" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131868" i_stop="133613" i_length="1746">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133614" g_stop="133753" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="257" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133754" i_stop="133840" i_length="87">
            <donor d_prob="0.575" d_score="1.00"/>
            <acceptor a_prob="0.656" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="133841" g_stop="133919" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="336" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="133920" i_stop="134027" i_length="108">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134028" g_stop="134091" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="400" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="134092" i_stop="134560" i_length="469">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="134561" g_stop="134652" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="492" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="134653" i_stop="134786" i_length="134">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="134787" g_stop="134852" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="558" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="134853" i_stop="135000" i_length="148">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="135001" g_stop="135079" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="637" r_length="79" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="+" ref_id="SGN-U331538" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130660" e_stop="130694"/>
          <exon e_start="131786" e_stop="131867"/>
          <exon e_start="133614" e_stop="133753"/>
          <exon e_start="133841" e_stop="133919"/>
          <exon e_start="134028" e_stop="134091"/>
          <exon e_start="134561" e_stop="134652"/>
          <exon e_start="134787" e_stop="134852"/>
          <exon e_start="135001" e_stop="135079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATGCTAAAACTCCTCGGCTTGAAAGGAAGAAGGTAGGGTGATCATAAATCAAGTCTTGCTATTTTTCATGAGCTCTGCCTCACAGTGTTAATCTTTTTTACTATTCTTTCAGTTGGAATATGTATATCATAATTTATATTTTTGTGAGCATATTTACGAAACACACTCTTATAATATTTCTAATCGATCATGTAATTCTGAATATGGCAAGTTCACATGCATGTCTTATTTGAAAGGCTATCTACATTATACATGCTTATCCTTAGAAATCATTGTGAGCAATCTGCTGTTTTTTTTTTAATTACATAAATGCATTATTGTCAAAAGATACATGAAAAGCATAAGGTTTTCTCTCCACATAATTTAGATTTCCAAGGGCCCGTTTAGACATGATTTGATGATTTGAAATTGAAATTTTGCTTGGACATGTCATTTGGGTTTCTTAAGTTGTATTTTTTCTCATAAACATAACGAGAACCCAACAATTTGTGGAAATTATCTTGGGTAATCCTCTCCCCATGAGCTAACTTTAGGGGTTGAGTTAGACCCAAAATTCATTTCTTATCGTGAATTAGAGTCGATGTGAGCCCCCTGTTAGTTTTCACGCCCATGGACCAGATAGAGTCGGGCAGATGGGATGGGGGTGGGGGTGATGGAATGAATCCCACATCAAAGGTGAACGAATTGAATTGGGGTCTCATATGGTCAGTGCAATCTTCCTCTTTGAGCAGCTTTTGGGTTGAGTAAAATAAACTGAAATCCTACTTTTTCGAGCCCCAAATCCTATGGCCAAACAACTATTAAGCGTTCTCATCCATAATAACTTGTAGAAAAGTTAAAACTATGTTTATAAATACAATATGTGAAAAGTCTTGGGGTCTCACATTGGTTGAGGGTATGGGCAATAGTCTCAGTCCAAATATTTTATTTTGATAAAATATATATTATTAGAAAAGGAACCAGTACTCTTGGTACTGAAATTACAAACAAGCTGACAGAAGTTAGTTGGATCCTCCTTCACTTTTGTCTCTAACCATTCTAAATCCAGCATTGATTTTACATCATTCTCATTTGCCAAAACTTTAAGTTGCGTCACTAAATTTATATTCATTTTGGTATCTAGTGAACCATATGTCACTGAGGATGAATTGAAGTTGATGCTGCGTGGGGCGGAGTTAAGTGGCGCAATTGAGGAGGAAGAGCAGGTGAGTTCATGTGTTTTCTGGGTTTCTGTTTTTTATGCTTGAACCTCAACTGTTACCAAATATGAACCAGTGAAGCACATGCATATTCTAATCATACATAAGCTTGTCTAGTTCACATAGAATTTGTTGTCCATTAGAATAGCCTTCATGTATGTGACCATTGTACCAAATGCAGCATCTTGAGATGTGTTTATCATGTCCATTTGAATGAGCACTATTTTAGCACTCTCTGTGTTTTGTTCTTATCTTGCATGTTATTATTGGAGATTCATGGTGACATAGTTGGAAGTCGATGGAGCCAGTGTTATCAAAGGCGAAAAATGCAAAAAAACAAAACTAAGGTCTATTGGTGCTTTGAGCACAAATAAAGCATGGACCTTGAAGAAGAAAGAAGTGAGTGGAAAAAAATACAAATATGTTTGCATGGTCCAAGACTAATAATTGTAAGCATGAATAACAAATCTAAGAACAAAGAAATTGAAAAATGTTTACGACGAAGTGAAATATCACTTGTGTAGTATCAGCTCTTCAGGGTTACACGAATTGTCAAGGAGAAGTGCCTTAGATCCTTGATGTTGAGACTGAAGCACAGGTAAAGCGTGGCTGACCGCACTTTAGGCGCGCTTTGACAACACTGAATGTAGCTACATACAAGTGTATTATTTTACTCTCTTTAAAAGACAACAAAATATATGACCTAAACATTAATGAGAGAGTTATGCTAATGATTTTTTCTTGGGAAGAACTGTCAAACAAACATAACATCCAAAACATGAAGAAATGATTGACAAAAAATTTCACCCTGCTTCTTCTATGCACCACCTTACTCATGCCCTCCAATGTTACATCTGCTGTATAATTGGTGCTGAAGCCAGTGCTTTGTGCCTTGGCTCGTCTTCTCTGGAAGAGGAAGGCTTTGTTCGATTTTGCCTTGACATGCATCTTCAGCCTACCACATTGTTTCCCTTGGCCAAAAAAATGACTTTGTGGTTTAAGACACAGCTGCCACCTTTTACAGGAATTTAGCATGCCATCTTTGATGGATTTTTTTTGGAGCTTAAAAACAGTTGGATTAAGCAGTTTTGGTTTAAATAAGCCAAAAATGCTTAAAAGTTGATTTGACCAGCTTTGAATATATTTCTCTGATTTTTCTTACTTTGTTGATTTCCATGCAGAAGTAGGTATCTTTTGTAACTTACTCGTGCGTTGGTTTGCACTTGTAGTATTTTGTTGTACTATCAGTTTTATCATCTTTCCCTTTACAAATTAATTCTCATTCTTTTAGACACAACTATGGGAACACAATCTATCTCAAATAAATAATACGTTGATTCCTGCATAACTTATGCAAGTATTATTTATGAGGAAAACAAAAAGGAGCAACCAAATGTTGATTTTATGACTTTCTGTGAGACTAAATCTCCTCAAATCTTAACCAAACACTATCATCTTTTGCTTGCTTTTATGGGGAGATAATATCTCCTAAAATAAAGCCTGACCCATTAATGTCTGTCCTCTTGCAGGACATGGCTGAAAATGTGTTGTCTTGCAAGTGACATGAGTTCTGCTGTAATTTTTTTAATTTTATTTTGGTTTGGTAATGACAGTGACATGAGTTGTGCTTAAATGGAGACGTGAGGATTCATATAGCCAATCCCAACTTGTTTGGGACTGGGGCAGAGCAATTGATATATATCTCCTAAAACTTAATTCAGATGAACCTTCTATGGCTCTGTTTTCTTGCAGGATATGATTGAAAATGTGTTGGAGATTAAAGACACTCATGTCAGGGAGGTAATGACACCTCTTGTTGATGTTGTTGCAATCGATGCCAGTGCAACGTTAGTTGATTTCCATAGTTTGTGGGTGACACATCAGTACTCCAGGTCTGATAGACTTTTAATTGCTTGTTTTTGCATAGAGAAGAAGTTTCCTTCAAAAGGTGCTAAAAGAGTTTGGCTATGAATTTTCAGGGTGCCCGTTTTTGAGCAACGTATAGATAATATTGTTGGCATTGCATATGCCATGGATCTCCTAGATTATGTACAAAAGGTTTAGCATCCACAACTTCAGCCAGTCTCTTTCAAAATTATCGTGGTGTCATTTCTAATTGAACACATAAATTTCATAGCATGCTGAAAATTCTCTTTAATTTTGAAGGGAGAACTGCTGGAAAGTTCTATTGTGGGAGACATTGCACATAAACCTGCATACTTTGTTCCCGGTAATTTACATTTCTTCCTGATGTTGACTGATGTATAAATAAGAAATTGTAGTTCTATGTCACCTAAACCATGGATCTGCAAAGTCAATAATTTAAATTACTGATATAAGTTGCTGATCAGTAGGTATTTTAAGTACCACTTCATATCCTTATCAGAGACGTCATGTACTGTCTACCATAACTAAATCAACAAATAGATGTACATACTTTTTAGTATAATTAACAATACCGAAGCCACTTTGCTGACTGTAGTACTGCCTTTCAGATTCTCACACTGTTGAGATGTGATTTATTCCTATTTAACCAGCTGCCATCGGCGGGAATCATTCTTATTTCCTAGAATCTGTCTCCCTTAAAACATTATGATTTTATGCTTTATGCTTATAAAATGCATAAACATTGCTCGTGTTTTCTTTCCACTCACAATAGTACCCAAGGAGGCAAACAAAGTAATCTTGTAACAATGCAGATTCTATGTCAGTGTGGAACCTTCTTAGAGAGTTCCGCATCAGAAAGGTACACATGGCTGTTGTTCTTAATGAATATGGAGGAACCATTGGAGTAAGTTTTCTCTCTCATCGTTTCTGTTTCTTGGTTGTAGTGCTTTGTTAATTCCATCAAAATTTCTTATCCACTGTGTGTATCTATCATTTAATTATCTATAACAATGTCTTCACATTATCTCTATGAAACAGATTGTAACCCTTGAAGATGTGGTCGAGGAAATTGTTGGCGAAATCTTTGACGAAAATGATTCAAAAGTAAGACTTATGAGTCCCTCTTTCCACTTCTCTGAACAGCTAGTTATTTGTAGGTTCATAGTTACCTCTGATGGATACCCCTCTTCAGTTATAGAATACATAGATATTTAGTATGTGGAAGTATATGTATTTTCTTGTTGCGTGACAGGAGGAAATCCAGAAAAAAACTGGCTATATTGTCATGCGGGCTGAGGGAATATACGATGTTGATGCAAATACCTCCATTG</genome_strand>
        <mrna_strand>GGAATGCTAAAACTCCTCGGCTTGAAAGGAAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACCATATGTCACTGAGGATGAATTGAAGTTGATGCTGCGTGGGGCGGAGTTAAGTGGCGCAATTGAGGAGGAAGAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGATTGAAAATGTGTTGGAGATTAAAGACACTCATGTCAGGGAGGTAATGACACCTCTTGTTGATGTTGTTGCAATCGATGCCAGTGCAACGTTAGTTGATTTCCATAGTTTGTGGGTGACACATCAGTACTCCAG.......................................................................................GGTGCCCGTTTTTGAGCAACGTATAGATAATATTGTTGGCATTGCATATGCCATGGATCTCCTAGATTATGTACAAAAG............................................................................................................GGAGAACTGCTGGAAAGTTCTATTGTGGGAGACATTGCACATAAACCTGCATACTTTGTTCCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTATGTCAGTGTGGAACCTTCTTAGAGAGTTCCGCATCAGAAAGGTACACATGGCTGTTGCTCTTAATGAATATGGAGGAACCATAGGA......................................................................................................................................ATTGTAACCCTTGAAGATGTGGTCGAGGAAATTGTTGGCGAAATCTTTGACGAAAATGATTCATAA....................................................................................................................................................GAGGAAATCCACAAAATGACTGGCTATATTGTCATGCGGGCTGAAGGAATATACGATGTTGATGCACATACCTCCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>21</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4468" PGL_stop="3761"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4468" e_stop="3761"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4468" e_stop="3761" e_length="708"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4468" stop="3761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346876" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAATATTGTTTTCCGGCCACCGGAATATTCTATTCTTTCTCAATTTCACCGGAATATTCTGCTCTTTCTCATTTTCTTAGCACTGCAATATGTCTAAATTATTTGGCACTGTTGTTGTACTTTTTCTCGTGTTAAATTCCGGTGAAGCGCAAAATGCACCTTCTCAATCCCCAATTTCTTCTCCCTCTAAATCACCGGCGGTAAAATCACAAGCACCGGTTTCTTCCCCGACTAAATCACCGGCAGTGAGATCTCAAGCACCGGTTTCTTCGCCCTCGGCTCCTACGATTAGCCCGTCTGCAGCGCCGGTACAGTCACCGAAAGCAGCTTCTCCAGTAACCAGCGTTTCACCCGCACTCACTCCGTCAATCAGTAGATCTGCTCCGGTTCCTTCTGTTGCAACTCCTCCGCCGGTATCAACGCCGGTGAGCACTCCGGCATCTTCCCCGGCAGCAGCGGATGTTCCGGCCAGCACTGCGACACCGTCAGTATCCCCAAGCATACCTTCAAGTTCAGCAAGTCCGGCGGAGTCTGTTGACGGACCTACTACGGCGCCGGCGAGTTTATCACCGGGAACTTCACCAGCACCCGTTGCTGATGATGTTTCCGCTGCAATTTCAGTGTTGAAAGTGCCGATGGTTCTAAGTGGGCTTGCTATTTGGGCCGCACTTTCAATTTGAATGCATCCGGCCCAATGTTGCACAAA</gDNA_template>
            <first_frame> L  N  I  V  F  R  P  P  E  Y  S  I  L  S  Q  F  H  R  N  I  L  L  F  L  I  F  L  A  L  Q  Y  V  *  I  I  W  H  C  C  C  T  F  S  R  V  K  F  R  *  S  A  K  C  T  F  S  I  P  N  F  F  S  L  *  I  T  G  G  K  I  T  S  T  G  F  F  P  D  *  I  T  G  S  E  I  S  S  T  G  F  F  A  L  G  S  Y  D  *  P  V  C  S  A  G  T  V  T  E  S  S  F  S  S  N  Q  R  F  T  R  T  H  S  V  N  Q  *  I  C  S  G  S  F  C  C  N  S  S  A  G  I  N  A  G  E  H  S  G  I  F  P  G  S  S  G  C  S  G  Q  H  C  D  T  V  S  I  P  K  H  T  F  K  F  S  K  S  G  G  V  C  *  R  T  Y  Y  G  A  G  E  F  I  T  G  N  F  T  S  T  R  C  *  *  C  F  R  C  N  F  S  V  E  S  A  D  G  S  K  W  A  C  Y  L  G  R  T  F  N  L  N  A  S  G  P  M  L  H  K </first_frame>
            <second_frame>  *  I  L  F  S  G  H  R  N  I  L  F  F  L  N  F  T  G  I  F  C  S  F  S  F  S  *  H  C  N  M  S  K  L  F  G  T  V  V  V  L  F  L  V  L  N  S  G  E  A  Q  N  A  P  S  Q  S  P  I  S  S  P  S  K  S  P  A  V  K  S  Q  A  P  V  S  S  P  T  K  S  P  A  V  R  S  Q  A  P  V  S  S  P  S  A  P  T  I  S  P  S  A  A  P  V  Q  S  P  K  A  A  S  P  V  T  S  V  S  P  A  L  T  P  S  I  S  R  S  A  P  V  P  S  V  A  T  P  P  P  V  S  T  P  V  S  T  P  A  S  S  P  A  A  A  D  V  P  A  S  T  A  T  P  S  V  S  P  S  I  P  S  S  S  A  S  P  A  E  S  V  D  G  P  T  T  A  P  A  S  L  S  P  G  T  S  P  A  P  V  A  D  D  V  S  A  A  I  S  V  L  K  V  P  M  V  L  S  G  L  A  I  W  A  A  L  S  I  *  M  H  P  A  Q  C  C  T   </second_frame>
            <third_frame>   E  Y  C  F  P  A  T  G  I  F  Y  S  F  S  I  S  P  E  Y  S  A  L  S  H  F  L  S  T  A  I  C  L  N  Y  L  A  L  L  L  Y  F  F  S  C  *  I  P  V  K  R  K  M  H  L  L  N  P  Q  F  L  L  P  L  N  H  R  R  *  N  H  K  H  R  F  L  P  R  L  N  H  R  Q  *  D  L  K  H  R  F  L  R  P  R  L  L  R  L  A  R  L  Q  R  R  Y  S  H  R  K  Q  L  L  Q  *  P  A  F  H  P  H  S  L  R  Q  S  V  D  L  L  R  F  L  L  L  Q  L  L  R  R  Y  Q  R  R  *  A  L  R  H  L  P  R  Q  Q  R  M  F  R  P  A  L  R  H  R  Q  Y  P  Q  A  Y  L  Q  V  Q  Q  V  R  R  S  L  L  T  D  L  L  R  R  R  R  V  Y  H  R  E  L  H  Q  H  P  L  L  M  M  F  P  L  Q  F  Q  C  *  K  C  R  W  F  *  V  G  L  L  F  G  P  H  F  Q  F  E  C  I  R  P  N  V  A  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4386" stop="3787"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HCNMSKLFGTVVVLFLVLNSGEAQNAPSQSPISSPSKSPAVKSQAPVSSPTKSPAVRSQAPVSSPSAPTISPSAAPVQSPKAASPVTSVSPALTPSISRSAPVPSVATPPPVSTPVSTPASSPAAADVPASTATPSVSPSIPSSSASPAESVDGPTTAPASLSPGTSPAPVADDVSAAISVLKVPMVLSGLAIWAALSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="20524" PGL_stop="26989"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20524" e_stop="22102"/>
            <exon e_start="24105" e_stop="24620"/>
            <exon e_start="25711" e_stop="25733"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.989"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.739"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="20524" e_stop="22102" e_length="1579"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="22103" i_stop="24104" i_length="2002"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="24105" e_stop="24620" e_length="516"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24621" i_stop="25710" i_length="1090"/>
          </intron>
          <exon e_serial="3" e_score="0.739">
            <gDNA_exon_boundary e_start="25711" e_stop="25733" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20524" stop="21161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21133" stop="22102"/>
              <exon start="24105" stop="24620"/>
              <exon start="25711" stop="25733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317210" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGCTGAGCTGAGCAAGTATGGACACGTGAAGGAGGTGAAATTTTTTGACGAAAAAGCTAGTGGGAAGTCTAAAGGATATTGCCAGGTTGAGTTTCATGATTCCTCAGCTGCCACAGCTTGCAAGGAAAGTATGAATGGACATATGTTCAATGGGCGACCATGTGTAGTCGCTTATGCATCATCACCGTATAATGTGAAGAGGATGGGTGAGGCTCAGGTGAATCGAAATCAGCAGGTGGCTCAAACTGCTGTTCCCCAAGCAAGGCGGGGGCCTGGTGAAGCTGCTGGTAAAATTGGAAATAACAACACTCCTACTGGTGGCAATTATCAAGGCGGCGGTGGTGGTGGGGATGGCAACAGGGGGGGTTATGGTAGAGGCAGTTGGGGTAGAGGAGGTCCTCAAGCTATGGGAAATCGGGGGCCTGTAGGTCCTATGAGAAACAGGCCTGGTGGGATTGCAGGTAGGGGTATGATGGGTAACGGTGGAGGTGGATTTGGACAAGGTATGGGTGGTGCACCTCCTATTATGCATCCTCAAACAATGATGGGTCAAGGCTTTGATCCTGCTTTTGGAGGGCCTATGGGGAGAATGGGTGGTTATGGAGGATTTCCTGGTGGTCCAGCTCCACCATTTCCTGGTATGTTGTCATCTTTTCCACCTGTTGGAGGAGTTGGGATGCCTGGAGTAGCTCCGCATGTAAATCCTGCATTCTTTGGTAGAGGAATGCCAATGAATGGTATGGGAATGATGCCAGGCGCTGGTATGGAGGGGCCTAACATGGGGATGTGGTCAGAACCTAATGCGGGTGGATGGGCTGGTGACGAGCACGGTGGTAGAGCAGGAGAGTCAAGTTATGCAGAAGAAGCTGGGTCTGATCATCAGTATGGAGAAACAACTCACGATAGAGGGGCTTGGCCAAATAATGTGAAAGAGAAAGACAGAGGATCAGAGCGTGATTGGTCTGGTTCTACAGATAGAAAACATAGAGAAGGCAGAGAACCATCCTATGATAGAGACATGGCTCGTGAAAAGGATCGGGGCCACGACCAGGATTGGCCAGAGAAAAGATACCGCGATGATAGAGATGTCGCACGAGACAGAGAGAGGGACCGCGATCATGAACGTCCTAGAGAACGAGGGCGTGATCGCGAGAGGGATCGAGATCGTGATCGTCATAGGGATGATAGAGATAGATATGCTGATCATCACAGGTACAAGGACCGTGAGCAGGAATATGATGATGAAGACAGAGGAAGATCATCAAGAGGACACAGCAAATCACGATTATCACATGAGGAAGACCATCGGTCAAGATCAAGGGATGCTGATTATGGAAAGAGGCAGCGTATAACATCAGAGTGATCTGTGGCCTTGGCTGCTTATTTTCAAGGGTACTTCACAATGAGATCAATTAGTAGCTAATCTACTGAGGGTTTCCATGTGTATCCAGGCTTTCTACTGGGAGGCTTCCTTTACTTCCTGCGTTCATCAAACAGTTGCTCTCTGAAATGTTCTGTTGCATACATGTTTATGCTCTTTTCCTGTTTAAGGAGCACTGGTCTCTCAGCACTAAGAA : CATGGAGGACGTAGAGCAAGCTGTGTGAAGAAGTATGGAAGGGAACTCCTTGAAGCTTCTGCCTGAGGAAGAATGTTATATTATATGGTTTTACCTCTCAGTGAAGATTGAATTGCTAGTGGAACCTTTTATGTCAGTTTTTGAATTTATGTTTTTGTTGAATGTGACCTGAATAATCCTTTCTGGTGACTTGTGACTTTATTGGAAGCCTAGTTATAGATTATCATAGACATTTGCTATTTGATGTAATGTGCTAGGAGGATTTGACCCACAGGTTGGCGCCGATCTGATCCCTTGCTCTGGGGTTTGTTGTACTAATTGTTTTTCTCTTTGTATCATCGTTGTTTCTTTGTTTTTGACCCAGTTTTTTAGTTGGGCATATGTTGTTGTTTAGCGCTTATTCTTCCTTCTGCAAGTGTACATAGAATTTTTCTTGTTACAAGTTTTTGAAAAGTGTACATGGAATACTAACAAGAAAATAGTTCCTGTCATTCTAAATGAACTGTTTACATTTGT : TTTCATAAAAAAAATTATAAAAA</gDNA_template>
            <first_frame> E  A  E  L  S  K  Y  G  H  V  K  E  V  K  F  F  D  E  K  A  S  G  K  S  K  G  Y  C  Q  V  E  F  H  D  S  S  A  A  T  A  C  K  E  S  M  N  G  H  M  F  N  G  R  P  C  V  V  A  Y  A  S  S  P  Y  N  V  K  R  M  G  E  A  Q  V  N  R  N  Q  Q  V  A  Q  T  A  V  P  Q  A  R  R  G  P  G  E  A  A  G  K  I  G  N  N  N  T  P  T  G  G  N  Y  Q  G  G  G  G  G  G  D  G  N  R  G  G  Y  G  R  G  S  W  G  R  G  G  P  Q  A  M  G  N  R  G  P  V  G  P  M  R  N  R  P  G  G  I  A  G  R  G  M  M  G  N  G  G  G  G  F  G  Q  G  M  G  G  A  P  P  I  M  H  P  Q  T  M  M  G  Q  G  F  D  P  A  F  G  G  P  M  G  R  M  G  G  Y  G  G  F  P  G  G  P  A  P  P  F  P  G  M  L  S  S  F  P  P  V  G  G  V  G  M  P  G  V  A  P  H  V  N  P  A  F  F  G  R  G  M  P  M  N  G  M  G  M  M  P  G  A  G  M  E  G  P  N  M  G  M  W  S  E  P  N  A  G  G  W  A  G  D  E  H  G  G  R  A  G  E  S  S  Y  A  E  E  A  G  S  D  H  Q  Y  G  E  T  T  H  D  R  G  A  W  P  N  N  V  K  E  K  D  R  G  S  E  R  D  W  S  G  S  T  D  R  K  H  R  E  G  R  E  P  S  Y  D  R  D  M  A  R  E  K  D  R  G  H  D  Q  D  W  P  E  K  R  Y  R  D  D  R  D  V  A  R  D  R  E  R  D  R  D  H  E  R  P  R  E  R  G  R  D  R  E  R  D  R  D  R  D  R  H  R  D  D  R  D  R  Y  A  D  H  H  R  Y  K  D  R  E  Q  E  Y  D  D  E  D  R  G  R  S  S  R  G  H  S  K  S  R  L  S  H  E  E  D  H  R  S  R  S  R  D  A  D  Y  G  K  R  Q  R  I  T  S  E  *  S  V  A  L  A  A  Y  F  Q  G  Y  F  T  M  R  S  I  S  S  *  S  T  E  G  F  H  V  Y  P  G  F  L  L  G  G  F  L  Y  F  L  R  S  S  N  S  C  S  L  K  C  S  V  A  Y  M  F  M  L  F  S  C  L  R  S  T  G  L  S  A  L  R   : T  W  R  T  *  S  K  L  C  E  E  V  W  K  G  T  P  *  S  F  C  L  R  K  N  V  I  L  Y  G  F  T  S  Q  *  R  L  N  C  *  W  N  L  L  C  Q  F  L  N  L  C  F  C  *  M  *  P  E  *  S  F  L  V  T  C  D  F  I  G  S  L  V  I  D  Y  H  R  H  L  L  F  D  V  M  C  *  E  D  L  T  H  R  L  A  P  I  *  S  L  A  L  G  F  V  V  L  I  V  F  L  F  V  S  S  L  F  L  C  F  *  P  S  F  L  V  G  H  M  L  L  F  S  A  Y  S  S  F  C  K  C  T  *  N  F  S  C  Y  K  F  L  K  S  V  H  G  I  L  T  R  K  *  F  L  S  F  *  M  N  C  L  H  L   : F  S  *  K  K  L  *  K </first_frame>
            <second_frame>  K  L  S  *  A  S  M  D  T  *  R  R  *  N  F  L  T  K  K  L  V  G  S  L  K  D  I  A  R  L  S  F  M  I  P  Q  L  P  Q  L  A  R  K  V  *  M  D  I  C  S  M  G  D  H  V  *  S  L  M  H  H  H  R  I  M  *  R  G  W  V  R  L  R  *  I  E  I  S  R  W  L  K  L  L  F  P  K  Q  G  G  G  L  V  K  L  L  V  K  L  E  I  T  T  L  L  L  V  A  I  I  K  A  A  V  V  V  G  M  A  T  G  G  V  M  V  E  A  V  G  V  E  E  V  L  K  L  W  E  I  G  G  L  *  V  L  *  E  T  G  L  V  G  L  Q  V  G  V  *  W  V  T  V  E  V  D  L  D  K  V  W  V  V  H  L  L  L  C  I  L  K  Q  *  W  V  K  A  L  I  L  L  L  E  G  L  W  G  E  W  V  V  M  E  D  F  L  V  V  Q  L  H  H  F  L  V  C  C  H  L  F  H  L  L  E  E  L  G  C  L  E  *  L  R  M  *  I  L  H  S  L  V  E  E  C  Q  *  M  V  W  E  *  C  Q  A  L  V  W  R  G  L  T  W  G  C  G  Q  N  L  M  R  V  D  G  L  V  T  S  T  V  V  E  Q  E  S  Q  V  M  Q  K  K  L  G  L  I  I  S  M  E  K  Q  L  T  I  E  G  L  G  Q  I  M  *  K  R  K  T  E  D  Q  S  V  I  G  L  V  L  Q  I  E  N  I  E  K  A  E  N  H  P  M  I  E  T  W  L  V  K  R  I  G  A  T  T  R  I  G  Q  R  K  D  T  A  M  I  E  M  S  H  E  T  E  R  G  T  A  I  M  N  V  L  E  N  E  G  V  I  A  R  G  I  E  I  V  I  V  I  G  M  I  E  I  D  M  L  I  I  T  G  T  R  T  V  S  R  N  M  M  M  K  T  E  E  D  H  Q  E  D  T  A  N  H  D  Y  H  M  R  K  T  I  G  Q  D  Q  G  M  L  I  M  E  R  G  S  V  *  H  Q  S  D  L  W  P  W  L  L  I  F  K  G  T  S  Q  *  D  Q  L  V  A  N  L  L  R  V  S  M  C  I  Q  A  F  Y  W  E  A  S  F  T  S  C  V  H  Q  T  V  A  L  *  N  V  L  L  H  T  C  L  C  S  F  P  V  *  G  A  L  V  S  Q  H  *  E  :  H  G  G  R  R  A  S  C  V  K  K  Y  G  R  E  L  L  E  A  S  A  *  G  R  M  L  Y  Y  M  V  L  P  L  S  E  D  *  I  A  S  G  T  F  Y  V  S  F  *  I  Y  V  F  V  E  C  D  L  N  N  P  F  W  *  L  V  T  L  L  E  A  *  L  *  I  I  I  D  I  C  Y  L  M  *  C  A  R  R  I  *  P  T  G  W  R  R  S  D  P  L  L  W  G  L  L  Y  *  L  F  F  S  L  Y  H  R  C  F  F  V  F  D  P  V  F  *  L  G  I  C  C  C  L  A  L  I  L  P  S  A  S  V  H  R  I  F  L  V  T  S  F  *  K  V  Y  M  E  Y  *  Q  E  N  S  S  C  H  S  K  *  T  V  Y  I  C  :  F  H  K  K  N  Y  K   </second_frame>
            <third_frame>   S  *  A  E  Q  V  W  T  R  E  G  G  E  I  F  *  R  K  S  *  W  E  V  *  R  I  L  P  G  *  V  S  *  F  L  S  C  H  S  L  Q  G  K  Y  E  W  T  Y  V  Q  W  A  T  M  C  S  R  L  C  I  I  T  V  *  C  E  E  D  G  *  G  S  G  E  S  K  S  A  G  G  S  N  C  C  S  P  S  K  A  G  A  W  *  S  C  W  *  N  W  K  *  Q  H  S  Y  W  W  Q  L  S  R  R  R  W  W  W  G  W  Q  Q  G  G  L  W  *  R  Q  L  G  *  R  R  S  S  S  Y  G  K  S  G  A  C  R  S  Y  E  K  Q  A  W  W  D  C  R  *  G  Y  D  G  *  R  W  R  W  I  W  T  R  Y  G  W  C  T  S  Y  Y  A  S  S  N  N  D  G  S  R  L  *  S  C  F  W  R  A  Y  G  E  N  G  W  L  W  R  I  S  W  W  S  S  S  T  I  S  W  Y  V  V  I  F  S  T  C  W  R  S  W  D  A  W  S  S  S  A  C  K  S  C  I  L  W  *  R  N  A  N  E  W  Y  G  N  D  A  R  R  W  Y  G  G  A  *  H  G  D  V  V  R  T  *  C  G  W  M  G  W  *  R  A  R  W  *  S  R  R  V  K  L  C  R  R  S  W  V  *  S  S  V  W  R  N  N  S  R  *  R  G  L  A  K  *  C  E  R  E  R  Q  R  I  R  A  *  L  V  W  F  Y  R  *  K  T  *  R  R  Q  R  T  I  L  *  *  R  H  G  S  *  K  G  S  G  P  R  P  G  L  A  R  E  K  I  P  R  *  *  R  C  R  T  R  Q  R  E  G  P  R  S  *  T  S  *  R  T  R  A  *  S  R  E  G  S  R  S  *  S  S  *  G  *  *  R  *  I  C  *  S  S  Q  V  Q  G  P  *  A  G  I  *  *  *  R  Q  R  K  I  I  K  R  T  Q  Q  I  T  I  I  T  *  G  R  P  S  V  K  I  K  G  C  *  L  W  K  E  A  A  Y  N  I  R  V  I  C  G  L  G  C  L  F  S  R  V  L  H  N  E  I  N  *  *  L  I  Y  *  G  F  P  C  V  S  R  L  S  T  G  R  L  P  L  L  P  A  F  I  K  Q  L  L  S  E  M  F  C  C  I  H  V  Y  A  L  F  L  F  K  E  H  W  S  L  S  T  K  N :   M  E  D  V  E  Q  A  V  *  R  S  M  E  G  N  S  L  K  L  L  P  E  E  E  C  Y  I  I  W  F  Y  L  S  V  K  I  E  L  L  V  E  P  F  M  S  V  F  E  F  M  F  L  L  N  V  T  *  I  I  L  S  G  D  L  *  L  Y  W  K  P  S  Y  R  L  S  *  T  F  A  I  *  C  N  V  L  G  G  F  D  P  Q  V  G  A  D  L  I  P  C  S  G  V  C  C  T  N  C  F  S  L  C  I  I  V  V  S  L  F  L  T  Q  F  F  S  W  A  Y  V  V  V  *  R  L  F  F  L  L  Q  V  Y  I  E  F  F  L  L  Q  V  F  E  K  C  T  W  N  T  N  K  K  I  V  P  V  I  L  N  E  L  F  T  F  V :   F  I  K  K  I  I  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20524" stop="21888"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1362</number_coding_nucleotides>
                  <number_encoded_amino_acids>454</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAELSKYGHVKEVKFFDEKASGKSKGYCQVEFHDSSAATACKESMNGHMFNGRPCVVAYASSPYNVKRMGEAQVNRNQQVAQTAVPQARRGPGEAAGKIGNNNTPTGGNYQGGGGGGDGNRGGYGRGSWGRGGPQAMGNRGPVGPMRNRPGGIAGRGMMGNGGGGFGQGMGGAPPIMHPQTMMGQGFDPAFGGPMGRMGGYGGFPGGPAPPFPGMLSSFPPVGGVGMPGVAPHVNPAFFGRGMPMNGMGMMPGAGMEGPNMGMWSEPNAGGWAGDEHGGRAGESSYAEEAGSDHQYGETTHDRGAWPNNVKEKDRGSERDWSGSTDRKHREGREPSYDRDMAREKDRGHDQDWPEKRYRDDRDVARDRERDRDHERPRERGRDRERDRDRDRHRDDRDRYADHHRYKDREQEYDDEDRGRSSRGHSKSRLSHEEDHRSRSRDADYGKRQRITSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25668" e_stop="25884"/>
            <exon e_start="26110" e_stop="26989"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.933" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25668" e_stop="25884" e_length="217"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.933">
            <gDNA_intron_boundary i_start="25885" i_stop="26109" i_length="225"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26110" e_stop="26989" e_length="880"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25668" stop="25884"/>
              <exon start="26110" stop="26989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317798" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTGCTTCAACATTTTTCTCCCTGACATATTGTTTATTATTAGTTTCATAAAAAAAATTATAAAAATTTTCTCCATTTTCTTGTTCTTAAAGCTTGTGTACTATCATAGGCAAATACAAGACTGCGTATACATCAATGTCTTCGGACTTTACTCGTAGAATTACATTTACGACAGAATAAAGTTGTGCATATCGTACCACTTGTGAGATTACTCCGG : GTAATTTCTCTTTTGTATTGATCGGAACAGAATTTAGGCGATTTCGATGGCGGATTCGGATAATGAATCAGGAGGACATAGAGATAACAGTAACATTGAGAGTTCCCTAAGAGAACAAGACAGGTTCCTTCCCATAGCAAATGTAAGCAGAATCATGAAGAAAGCTTTACCAGCTAACGCGAAAATCTCAAAAGATGCTAAGGAGGTAGTTCAAGAATGTGTTTCTGAATTCATAAGTTTCATCACAGGGGAAGCATCAGATAAGTGTCAAAGAGAAAAGAGAAAGACAATCAATGGTGATGATCTGTTGTGGGCAATGACAACTCTTGGTTTTGAAGAATACATTGAGCCACTCAAGATTTATTTGCAGAGGTTTAGGGATTTGGAAGGGCAAAAAAGTGGTGTCTCTGGAGAGAAGGATCATAGTGGATCAGTGGGTTATGTTGAGGACTACCATGGCATGATGATGATGGGGAGTCAACATCATCAAGGACACGGGTATGGCACCGGTGTATACAATCATCATACGGGGGAGAATGCTGCAGGGGTTGGTACAGGAGGGTCGCGGTTTCCTGACGTTGGGAGGCAAAGGTGAAGCTGTGACATCCGCGGACTACAAAGATGTATCAGGACGCGATGTATCAACTGTCAACAGGTTGAAGTATGGACACTGAAAGACAGGAACAGACTTTGTAGTTTGTATTCTACAGAGATGTAAATTGGTAAACATGTGTGTACATTACAATGTGGGTGTAAACATGGATTGTAATTGTCTATTACATCATTGTTTCTCTAATAGTTGATGTTTGAATAAGCCTTTTTTAGTGTAACAAACGATTTACATTGTCATATATTATCACTTCTTCAAGAGTTTCAAACC</gDNA_template>
            <first_frame> S  A  S  T  F  F  S  L  T  Y  C  L  L  L  V  S  *  K  K  L  *  K  F  S  P  F  S  C  S  *  S  L  C  T  I  I  G  K  Y  K  T  A  Y  T  S  M  S  S  D  F  T  R  R  I  T  F  T  T  E  *  S  C  A  Y  R  T  T  C  E  I  T  P   : G  N  F  S  F  V  L  I  G  T  E  F  R  R  F  R  W  R  I  R  I  M  N  Q  E  D  I  E  I  T  V  T  L  R  V  P  *  E  N  K  T  G  S  F  P  *  Q  M  *  A  E  S  *  R  K  L  Y  Q  L  T  R  K  S  Q  K  M  L  R  R  *  F  K  N  V  F  L  N  S  *  V  S  S  Q  G  K  H  Q  I  S  V  K  E  K  R  E  R  Q  S  M  V  M  I  C  C  G  Q  *  Q  L  L  V  L  K  N  T  L  S  H  S  R  F  I  C  R  G  L  G  I  W  K  G  K  K  V  V  S  L  E  R  R  I  I  V  D  Q  W  V  M  L  R  T  T  M  A  *  *  *  W  G  V  N  I  I  K  D  T  G  M  A  P  V  Y  T  I  I  I  R  G  R  M  L  Q  G  L  V  Q  E  G  R  G  F  L  T  L  G  G  K  G  E  A  V  T  S  A  D  Y  K  D  V  S  G  R  D  V  S  T  V  N  R  L  K  Y  G  H  *  K  T  G  T  D  F  V  V  C  I  L  Q  R  C  K  L  V  N  M  C  V  H  Y  N  V  G  V  N  M  D  C  N  C  L  L  H  H  C  F  S  N  S  *  C  L  N  K  P  F  L  V  *  Q  T  I  Y  I  V  I  Y  Y  H  F  F  K  S  F  K   </first_frame>
            <second_frame>  V  L  Q  H  F  S  P  *  H  I  V  Y  Y  *  F  H  K  K  N  Y  K  N  F  L  H  F  L  V  L  K  A  C  V  L  S  *  A  N  T  R  L  R  I  H  Q  C  L  R  T  L  L  V  E  L  H  L  R  Q  N  K  V  V  H  I  V  P  L  V  R  L  L  R  :  V  I  S  L  L  Y  *  S  E  Q  N  L  G  D  F  D  G  G  F  G  *  *  I  R  R  T  *  R  *  Q  *  H  *  E  F  P  K  R  T  R  Q  V  P  S  H  S  K  C  K  Q  N  H  E  E  S  F  T  S  *  R  E  N  L  K  R  C  *  G  G  S  S  R  M  C  F  *  I  H  K  F  H  H  R  G  S  I  R  *  V  S  K  R  K  E  K  D  N  Q  W  *  *  S  V  V  G  N  D  N  S  W  F  *  R  I  H  *  A  T  Q  D  L  F  A  E  V  *  G  F  G  R  A  K  K  W  C  L  W  R  E  G  S  *  W  I  S  G  L  C  *  G  L  P  W  H  D  D  D  G  E  S  T  S  S  R  T  R  V  W  H  R  C  I  Q  S  S  Y  G  G  E  C  C  R  G  W  Y  R  R  V  A  V  S  *  R  W  E  A  K  V  K  L  *  H  P  R  T  T  K  M  Y  Q  D  A  M  Y  Q  L  S  T  G  *  S  M  D  T  E  R  Q  E  Q  T  L  *  F  V  F  Y  R  D  V  N  W  *  T  C  V  Y  I  T  M  W  V  *  T  W  I  V  I  V  Y  Y  I  I  V  S  L  I  V  D  V  *  I  S  L  F  *  C  N  K  R  F  T  L  S  Y  I  I  T  S  S  R  V  S  N  </second_frame>
            <third_frame>   C  F  N  I  F  L  P  D  I  L  F  I  I  S  F  I  K  K  I  I  K  I  F  S  I  F  L  F  L  K  L  V  Y  Y  H  R  Q  I  Q  D  C  V  Y  I  N  V  F  G  L  Y  S  *  N  Y  I  Y  D  R  I  K  L  C  I  S  Y  H  L  *  D  Y  S  G :   *  F  L  F  C  I  D  R  N  R  I  *  A  I  S  M  A  D  S  D  N  E  S  G  G  H  R  D  N  S  N  I  E  S  S  L  R  E  Q  D  R  F  L  P  I  A  N  V  S  R  I  M  K  K  A  L  P  A  N  A  K  I  S  K  D  A  K  E  V  V  Q  E  C  V  S  E  F  I  S  F  I  T  G  E  A  S  D  K  C  Q  R  E  K  R  K  T  I  N  G  D  D  L  L  W  A  M  T  T  L  G  F  E  E  Y  I  E  P  L  K  I  Y  L  Q  R  F  R  D  L  E  G  Q  K  S  G  V  S  G  E  K  D  H  S  G  S  V  G  Y  V  E  D  Y  H  G  M  M  M  M  G  S  Q  H  H  Q  G  H  G  Y  G  T  G  V  Y  N  H  H  T  G  E  N  A  A  G  V  G  T  G  G  S  R  F  P  D  V  G  R  Q  R  *  S  C  D  I  R  G  L  Q  R  C  I  R  T  R  C  I  N  C  Q  Q  V  E  V  W  T  L  K  D  R  N  R  L  C  S  L  Y  S  T  E  M  *  I  G  K  H  V  C  T  L  Q  C  G  C  K  H  G  L  *  L  S  I  T  S  L  F  L  *  *  L  M  F  E  *  A  F  F  S  V  T  N  D  L  H  C  H  I  L  S  L  L  Q  E  F  Q  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26147" stop="26704"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AISMADSDNESGGHRDNSNIESSLREQDRFLPIANVSRIMKKALPANAKISKDAKEVVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYIEPLKIYLQRFRDLEGQKSGVSGEKDHSGSVGYVEDYHGMMMMGSQHHQGHGYGTGVYNHHTGENAAGVGTGGSRFPDVGRQR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="28896" PGL_stop="27242"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28896" e_stop="28496"/>
            <exon e_start="28383" e_stop="28271"/>
            <exon e_start="28068" e_stop="28038"/>
            <exon e_start="27824" e_stop="27242"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.882" acc_prob="0.999" e_score="0.968"/>
          <exon-intron don_prob="0.943" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.767" acc_prob="0.942" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="28896" e_stop="28496" e_length="401"/>
          </exon>
          <intron i_serial="1" don_prob="0.882" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28495" i_stop="28384" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28383" e_stop="28271" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.943" acc_prob="0.927">
            <gDNA_intron_boundary i_start="28270" i_stop="28069" i_length="202"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28068" e_stop="28038" e_length="31"/>
          </exon>
          <intron i_serial="3" don_prob="0.767" acc_prob="0.942">
            <gDNA_intron_boundary i_start="28037" i_stop="27825" i_length="213"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="27824" e_stop="27242" e_length="583"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28896" stop="28496"/>
              <exon start="28383" stop="28271"/>
              <exon start="28068" stop="28038"/>
              <exon start="27824" stop="27242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319014" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTGAGAGATCTGATGATGAGAAGTCAGATCAGGCTGAAAGTGAGAAGGAGAGTGAATCTGAAGATGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCAAGAGCCTGAGCCTGAGCCTGAGCCAGAGCCGGAGCCTAAGGAGGACAAGAAAAAGCATAAGCAGAGTTCAAGTAAATCTTCAACAAAGAAAGAACCTGCTGTGAAAGCTAAGACCAAGAAACCTGCAGTCTCTAAAGTACCAAGTCCTCCCAAAAAGACCCCTTCAAAATCATCAAAGAGCTCAAAGCATATTGCTAACGATGATGCAACTCCCAAAGCATCTTCAAAGAAGAAGAAAACTGAAGTAGTTAAAGAAAAATCTTCAACGCCAAAGAAGTCTACTCCCAGAGAAAATACTG : GGAAAAAGATTGTAAAGGGAAAGGACAAGAGCAAGGAGGATAAACTGAGACCAAGTGATGATGAACTTAGAAATGCGATTTGTGAAATTCTGAAAGAAGTTGACTTCAATACG : GCTACCTTTACTGACATTCTGAAGCAACTTG : CCAAGCGGTTTGATACCGATCTCATGCCCAGAAAATCGTCTATAAAGATTATGATCCAGGATGAGCTTACTAAACTAGCTGACGAGGAAGATGATGAGGAAGATGAAGGTGAGGCCTTGAAGGATGCTAAAAAGCCTTCTACCAAAGCTGTGAAAGCCTGAAAACATGAGTAGAATGTAATCACAGGAAATGTAGCCTACACTGTCCGTCTCAATAACCGATCTCTTCCTCATGAATTTGTGCCTCCAGGTGCTCGTTACGAGTTCAACCAGCTGTAATCTATTGTCAATGTATCGTTTTATGATTAATACTTTGACTAGGATATCGTAGAATTATAAATGCAAGATTACTGCTTGTATAAACACATTTGTAGTTTTTGTTTCTGTCAACTTATTTAGCTGCCCTGGATCATGGATTACAAGTACAAATACTGTAGTCAAAATCAACATCCATTTGTGACCATGTAAGGCTGTTTTCTTATTTATTTTTGTGGGCTGGGATTTTCCAAGTCTAACTAGTGTTGGAACTTGAAACTGTCTTTGTTAGTGAATCAACTATCAGCTAGTGCTTTGTTGTGGCCATT</gDNA_template>
            <first_frame> S  *  E  I  *  *  *  E  V  R  S  G  *  K  *  E  G  E  *  I  *  R  *  A  *  A  *  A  *  A  *  A  *  A  R  A  *  A  *  A  *  A  R  A  G  A  *  G  G  Q  E  K  A  *  A  E  F  K  *  I  F  N  K  E  R  T  C  C  E  S  *  D  Q  E  T  C  S  L  *  S  T  K  S  S  Q  K  D  P  F  K  I  I  K  E  L  K  A  Y  C  *  R  *  C  N  S  Q  S  I  F  K  E  E  E  N  *  S  S  *  R  K  I  F  N  A  K  E  V  Y  S  Q  R  K  Y  W :   E  K  D  C  K  G  K  G  Q  E  Q  G  G  *  T  E  T  K  *  *  *  T  *  K  C  D  L  *  N  S  E  R  S  *  L  Q  Y   : G  Y  L  Y  *  H  S  E  A  T  C :   Q  A  V  *  Y  R  S  H  A  Q  K  I  V  Y  K  D  Y  D  P  G  *  A  Y  *  T  S  *  R  G  R  *  *  G  R  *  R  *  G  L  E  G  C  *  K  A  F  Y  Q  S  C  E  S  L  K  T  *  V  E  C  N  H  R  K  C  S  L  H  C  P  S  Q  *  P  I  S  S  S  *  I  C  A  S  R  C  S  L  R  V  Q  P  A  V  I  Y  C  Q  C  I  V  L  *  L  I  L  *  L  G  Y  R  R  I  I  N  A  R  L  L  L  V  *  T  H  L  *  F  L  F  L  S  T  Y  L  A  A  L  D  H  G  L  Q  V  Q  I  L  *  S  K  S  T  S  I  C  D  H  V  R  L  F  S  Y  L  F  L  W  A  G  I  F  Q  V  *  L  V  L  E  L  E  T  V  F  V  S  E  S  T  I  S  *  C  F  V  V  A  I </first_frame>
            <second_frame>  P  E  R  S  D  D  E  K  S  D  Q  A  E  S  E  K  E  S  E  S  E  D  E  P  E  P  E  P  E  P  E  P  E  Q  E  P  E  P  E  P  E  P  E  P  E  P  K  E  D  K  K  K  H  K  Q  S  S  S  K  S  S  T  K  K  E  P  A  V  K  A  K  T  K  K  P  A  V  S  K  V  P  S  P  P  K  K  T  P  S  K  S  S  K  S  S  K  H  I  A  N  D  D  A  T  P  K  A  S  S  K  K  K  K  T  E  V  V  K  E  K  S  S  T  P  K  K  S  T  P  R  E  N  T   : G  K  K  I  V  K  G  K  D  K  S  K  E  D  K  L  R  P  S  D  D  E  L  R  N  A  I  C  E  I  L  K  E  V  D  F  N  T  :  A  T  F  T  D  I  L  K  Q  L   : A  K  R  F  D  T  D  L  M  P  R  K  S  S  I  K  I  M  I  Q  D  E  L  T  K  L  A  D  E  E  D  D  E  E  D  E  G  E  A  L  K  D  A  K  K  P  S  T  K  A  V  K  A  *  K  H  E  *  N  V  I  T  G  N  V  A  Y  T  V  R  L  N  N  R  S  L  P  H  E  F  V  P  P  G  A  R  Y  E  F  N  Q  L  *  S  I  V  N  V  S  F  Y  D  *  Y  F  D  *  D  I  V  E  L  *  M  Q  D  Y  C  L  Y  K  H  I  C  S  F  C  F  C  Q  L  I  *  L  P  W  I  M  D  Y  K  Y  K  Y  C  S  Q  N  Q  H  P  F  V  T  M  *  G  C  F  L  I  Y  F  C  G  L  G  F  S  K  S  N  *  C  W  N  L  K  L  S  L  L  V  N  Q  L  S  A  S  A  L  L  W  P   </second_frame>
            <third_frame>   L  R  D  L  M  M  R  S  Q  I  R  L  K  V  R  R  R  V  N  L  K  M  S  L  S  L  S  L  S  L  S  L  S  K  S  L  S  L  S  L  S  Q  S  R  S  L  R  R  T  R  K  S  I  S  R  V  Q  V  N  L  Q  Q  R  K  N  L  L  *  K  L  R  P  R  N  L  Q  S  L  K  Y  Q  V  L  P  K  R  P  L  Q  N  H  Q  R  A  Q  S  I  L  L  T  M  M  Q  L  P  K  H  L  Q  R  R  R  K  L  K  *  L  K  K  N  L  Q  R  Q  R  S  L  L  P  E  K  I  L  :  G  K  R  L  *  R  E  R  T  R  A  R  R  I  N  *  D  Q  V  M  M  N  L  E  M  R  F  V  K  F  *  K  K  L  T  S  I  R :   L  P  L  L  T  F  *  S  N  L  :  P  S  G  L  I  P  I  S  C  P  E  N  R  L  *  R  L  *  S  R  M  S  L  L  N  *  L  T  R  K  M  M  R  K  M  K  V  R  P  *  R  M  L  K  S  L  L  P  K  L  *  K  P  E  N  M  S  R  M  *  S  Q  E  M  *  P  T  L  S  V  S  I  T  D  L  F  L  M  N  L  C  L  Q  V  L  V  T  S  S  T  S  C  N  L  L  S  M  Y  R  F  M  I  N  T  L  T  R  I  S  *  N  Y  K  C  K  I  T  A  C  I  N  T  F  V  V  F  V  S  V  N  L  F  S  C  P  G  S  W  I  T  S  T  N  T  V  V  K  I  N  I  H  L  *  P  C  K  A  V  F  L  F  I  F  V  G  W  D  F  P  S  L  T  S  V  G  T  *  N  C  L  C  *  *  I  N  Y  Q  L  V  L  C  C  G  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28895" stop="28496"/>
                    <exon start="28383" stop="28271"/>
                    <exon start="28068" stop="28038"/>
                    <exon start="27824" stop="27664"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PERSDDEKSDQAESEKESESEDEPEPEPEPEPEQEPEPEPEPEPEPKEDKKKHKQSSSKSSTKKEPAVKAKTKKPAVSKVPSPPKKTPSKSSKSSKHIANDDATPKASSKKKKTEVVKEKSSTPKKSTPRENTGKKIVKGKDKSKEDKLRPSDDELRNAICEILKEVDFNTATFTDILKQLAKRFDTDLMPRKSSIKIMIQDELTKLADEEDDEEDEGEALKDAKKPSTKAVKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="29812" PGL_stop="29006"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29812" e_stop="29751"/>
            <exon e_start="29663" e_stop="29583"/>
            <exon e_start="29021" e_stop="29006"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.877" e_score="0.903"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.963"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="29812" e_stop="29751" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.877">
            <gDNA_intron_boundary i_start="29750" i_stop="29664" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="0.963">
            <gDNA_exon_boundary e_start="29663" e_stop="29583" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29582" i_stop="29022" i_length="561"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29021" e_stop="29006" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29812" stop="29751"/>
              <exon start="29663" stop="29583"/>
              <exon start="29021" stop="29006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342451" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATGGACTTTCTGGAAGCTCCTCATGCTACAACTTCTGAGTTGCTGGCCGAGAAGGACCAG : TCAAGCAGAGGAAAGAAGCGGAGAAGAGAGAGCAAAAAAAGTCCCTCATCGGCATCCGCTAGCTCGAAAGGATCAACCAAG : AGTGGAAAGAAGGCCG</gDNA_template>
            <first_frame> *  W  T  F  W  K  L  L  M  L  Q  L  L  S  C  W  P  R  R  T  S :   Q  A  E  E  R  S  G  E  E  R  A  K  K  V  P  H  R  H  P  L  A  R  K  D  Q  P  R :   V  E  R  R  P </first_frame>
            <second_frame>  D  G  L  S  G  S  S  S  C  Y  N  F  *  V  A  G  R  E  G  P   : V  K  Q  R  K  E  A  E  K  R  E  Q  K  K  S  L  I  G  I  R  *  L  E  R  I  N  Q   : E  W  K  E  G   </second_frame>
            <third_frame>   M  D  F  L  E  A  P  H  A  T  T  S  E  L  L  A  E  K  D  Q  :  S  S  R  G  K  K  R  R  R  E  S  K  K  S  P  S  S  A  S  A  S  S  K  G  S  T  K  :  S  G  K  K  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0033E17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="37051" PGL_stop="36631"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37051" e_stop="36631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="37051" e_stop="36631" e_length="421"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37051" stop="36631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTCGATGACCAAATTTTTTCTTCGAATAGGAAATTAAATTACAATACACACGAAAAAAATAGTTTAAATTTTTTTCCTTTAAACTAAGGAATGAAATAAAAAAATAAAAAAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGCATGAAAAAAATTAAAATATATCTTGAACTTTGATAGAAGAATCATATATACCCCTAAATATTTTTTTAAGCAAAATTAAAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTTTAACGGTAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAGCCACTTTTACAACGAGGGGTATATCAGCTCCAAATGACAAAGTTGAGAG</gDNA_template>
            <first_frame> L  L  S  M  T  K  F  F  L  R  I  G  N  *  I  T  I  H  T  K  K  I  V  *  I  F  F  L  *  T  K  E  *  N  K  K  I  K  K  E  *  E  T  Q  I  I  I  I  K  E  V  K  K  *  F  M  H  E  K  N  *  N  I  S  *  T  L  I  E  E  S  Y  I  P  L  N  I  F  L  S  K  I  K  S  N  K  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  V  Y  V  S  H  F  L  T  V  G  V  Y  V  S  R  L  Y  N  D  K  G  I  Y  E  P  L  L  Q  R  G  V  Y  Q  L  Q  M  T  K  L  R  </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  F  E  *  E  I  K  L  Q  Y  T  R  K  K  *  F  K  F  F  S  F  K  L  R  N  E  I  K  K  *  K  K  N  K  K  L  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  P  *  I  F  F  *  A  K  L  K  V  I  N  I  N  L  K  L  I  F  *  L  P  L  N  E  G  Y  M  *  V  I  F  *  R  *  G  Y  M  *  A  V  C  I  T  I  R  A  Y  M  S  H  F  Y  N  E  G  Y  I  S  S  K  *  Q  S  *  E </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  N  R  K  L  N  Y  N  T  H  E  K  N  S  L  N  F  F  P  L  N  *  G  M  K  *  K  N  K  K  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  A  *  K  K  L  K  Y  I  L  N  F  D  R  R  I  I  Y  T  P  K  Y  F  F  K  Q  N  *  K  *  *  I  *  I  *  N  *  F  F  N  F  R  *  M  K  G  I  C  E  S  F  F  N  G  R  G  I  C  E  P  F  V  *  R  *  G  H  I  *  A  T  F  T  T  R  G  I  S  A  P  N  D  K  V  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0033E17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="41704" PGL_stop="45213"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41704" e_stop="41923"/>
            <exon e_start="44331" e_stop="44431"/>
            <exon e_start="44573" e_stop="45213"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.669" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41704" e_stop="41923" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.797">
            <gDNA_intron_boundary i_start="41924" i_stop="44330" i_length="2407"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44331" e_stop="44431" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.669">
            <gDNA_intron_boundary i_start="44432" i_stop="44572" i_length="141"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="44573" e_stop="45213" e_length="641"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41704" stop="41923"/>
              <exon start="44331" stop="44431"/>
              <exon start="44573" stop="45213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320542" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACAGAGGATTTTAGATTATTTTAGGGTTTCGGATTCTCTTCGAAAAAGATTCGATTTTGATGTAATCTTATAGCTATAGTTGCGTGCTTTGATTCACTTCTGAGGAGAATCGAGCGGCGACGGCGACGGCGTTGCAGTGAAATCGATGATCGTCAGCTGCACCAAATGGACCAGTCTTCGGTGCAAACCGCTCCTTCAATCGAAGATGACGAGTGGG : ACACTGAAGGATATGTAATTCCAAGCTTGGAACTTGAAGATTCTGGCCAAAATAACAGTAATTTAGTTGAAGTTGAAGAGTCGAAGACAGTTGCAGCTGAG : TCTAAGAAAGAAGAGAATATATATCTTGGACCTCACGGTGCTCCTCCTTCACAATCAAAGCAACAAGAGCTTGGTTCTGCTAATAATCGCAAGCAGAAGTTTAGACAGAAACTGAAGGAAGCAGACAAGAAGTACAGCGGAAGTGGTCGTGAGAATAAGGTGGAACACTTGAGAGAGCTTGTGGGTGGAAAAATGGCTGCAGGATCAAAGAATTCCCCCAAGGATTGGCTTGACCCTCATTGTGATGAAAATATGTTCCAAAGAAACCAACGTTAGCGTAATACAAGTGTCATTTACATACTCGGAAACCCCCTTCAGTAAGTCTTCCTTTCGGAGGGAAAAGAAAGCTTTTACAGAATATTTATGTACTCTCAAATAATTCCCCCAGTAACCTATGTTGTGGGGCTAAATATCACCAGTCCTCTGGCTGTGCTTGTGATATACAGATTCGATCTGAGCTGCTCTCTTTCACAATATTTGGTATATGAATTGTTTCTTTGCTTTGATTTGAAAACAAGGATGTGTAAGGATTCAGTTTAATATGGTGAAACGATAATGTGTTACTGCATTGTTCATCCCCCATTAATTCTTAAATTATTGATGCAAATAGAAAAAAAGACTTTATTTTTTATAAAAAAATT</gDNA_template>
            <first_frame> K  T  E  D  F  R  L  F  *  G  F  G  F  S  S  K  K  I  R  F  *  C  N  L  I  A  I  V  A  C  F  D  S  L  L  R  R  I  E  R  R  R  R  R  R  C  S  E  I  D  D  R  Q  L  H  Q  M  D  Q  S  S  V  Q  T  A  P  S  I  E  D  D  E  W   : D  T  E  G  Y  V  I  P  S  L  E  L  E  D  S  G  Q  N  N  S  N  L  V  E  V  E  E  S  K  T  V  A  A  E  :  S  K  K  E  E  N  I  Y  L  G  P  H  G  A  P  P  S  Q  S  K  Q  Q  E  L  G  S  A  N  N  R  K  Q  K  F  R  Q  K  L  K  E  A  D  K  K  Y  S  G  S  G  R  E  N  K  V  E  H  L  R  E  L  V  G  G  K  M  A  A  G  S  K  N  S  P  K  D  W  L  D  P  H  C  D  E  N  M  F  Q  R  N  Q  R  *  R  N  T  S  V  I  Y  I  L  G  N  P  L  Q  *  V  F  L  S  E  G  K  E  S  F  Y  R  I  F  M  Y  S  Q  I  I  P  P  V  T  Y  V  V  G  L  N  I  T  S  P  L  A  V  L  V  I  Y  R  F  D  L  S  C  S  L  S  Q  Y  L  V  Y  E  L  F  L  C  F  D  L  K  T  R  M  C  K  D  S  V  *  Y  G  E  T  I  M  C  Y  C  I  V  H  P  P  L  I  L  K  L  L  M  Q  I  E  K  K  T  L  F  F  I  K  K   </first_frame>
            <second_frame>  K  Q  R  I  L  D  Y  F  R  V  S  D  S  L  R  K  R  F  D  F  D  V  I  L  *  L  *  L  R  A  L  I  H  F  *  G  E  S  S  G  D  G  D  G  V  A  V  K  S  M  I  V  S  C  T  K  W  T  S  L  R  C  K  P  L  L  Q  S  K  M  T  S  G  :  T  L  K  D  M  *  F  Q  A  W  N  L  K  I  L  A  K  I  T  V  I  *  L  K  L  K  S  R  R  Q  L  Q  L  S :   L  R  K  K  R  I  Y  I  L  D  L  T  V  L  L  L  H  N  Q  S  N  K  S  L  V  L  L  I  I  A  S  R  S  L  D  R  N  *  R  K  Q  T  R  S  T  A  E  V  V  V  R  I  R  W  N  T  *  E  S  L  W  V  E  K  W  L  Q  D  Q  R  I  P  P  R  I  G  L  T  L  I  V  M  K  I  C  S  K  E  T  N  V  S  V  I  Q  V  S  F  T  Y  S  E  T  P  F  S  K  S  S  F  R  R  E  K  K  A  F  T  E  Y  L  C  T  L  K  *  F  P  Q  *  P  M  L  W  G  *  I  S  P  V  L  W  L  C  L  *  Y  T  D  S  I  *  A  A  L  F  H  N  I  W  Y  M  N  C  F  F  A  L  I  *  K  Q  G  C  V  R  I  Q  F  N  M  V  K  R  *  C  V  T  A  L  F  I  P  H  *  F  L  N  Y  *  C  K  *  K  K  R  L  Y  F  L  *  K  N  </second_frame>
            <third_frame>   N  R  G  F  *  I  I  L  G  F  R  I  L  F  E  K  D  S  I  L  M  *  S  Y  S  Y  S  C  V  L  *  F  T  S  E  E  N  R  A  A  T  A  T  A  L  Q  *  N  R  *  S  S  A  A  P  N  G  P  V  F  G  A  N  R  S  F  N  R  R  *  R  V  G :   H  *  R  I  C  N  S  K  L  G  T  *  R  F  W  P  K  *  Q  *  F  S  *  S  *  R  V  E  D  S  C  S  *   : V  *  E  R  R  E  Y  I  S  W  T  S  R  C  S  S  F  T  I  K  A  T  R  A  W  F  C  *  *  S  Q  A  E  V  *  T  E  T  E  G  S  R  Q  E  V  Q  R  K  W  S  *  E  *  G  G  T  L  E  R  A  C  G  W  K  N  G  C  R  I  K  E  F  P  Q  G  L  A  *  P  S  L  *  *  K  Y  V  P  K  K  P  T  L  A  *  Y  K  C  H  L  H  T  R  K  P  P  S  V  S  L  P  F  G  G  K  R  K  L  L  Q  N  I  Y  V  L  S  N  N  S  P  S  N  L  C  C  G  A  K  Y  H  Q  S  S  G  C  A  C  D  I  Q  I  R  S  E  L  L  S  F  T  I  F  G  I  *  I  V  S  L  L  *  F  E  N  K  D  V  *  G  F  S  L  I  W  *  N  D  N  V  L  L  H  C  S  S  P  I  N  S  *  I  I  D  A  N  R  K  K  D  F  I  F  Y  K  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41767" stop="41923"/>
                    <exon start="44331" stop="44431"/>
                    <exon start="44573" stop="44848"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CNLIAIVACFDSLLRRIERRRRRRCSEIDDRQLHQMDQSSVQTAPSIEDDEWDTEGYVIPSLELEDSGQNNSNLVEVEESKTVAAESKKEENIYLGPHGAPPSQSKQQELGSANNRKQKFRQKLKEADKKYSGSGRENKVEHLRELVGGKMAAGSKNSPKDWLDPHCDENMFQRNQR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44894" stop="45112"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFLSEGKESFYRIFMYSQIIPPVTYVVGLNITSPLAVLVIYRFDLSCSLSQYLVYELFLCFDLKTRMCKDSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="48875" PGL_stop="45279"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48875" e_stop="48640"/>
            <exon e_start="48179" e_stop="48105"/>
            <exon e_start="46970" e_stop="46827"/>
            <exon e_start="46702" e_stop="46313"/>
            <exon e_start="46232" e_stop="45997"/>
            <exon e_start="45743" e_stop="45279"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.724" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.899" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48875" e_stop="48640" e_length="236"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.992">
            <gDNA_intron_boundary i_start="48639" i_stop="48180" i_length="460"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48179" e_stop="48105" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48104" i_stop="46971" i_length="1134"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46970" e_stop="46827" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.724" acc_prob="0.974">
            <gDNA_intron_boundary i_start="46826" i_stop="46703" i_length="124"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46702" e_stop="46313" e_length="390"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.884">
            <gDNA_intron_boundary i_start="46312" i_stop="46233" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46232" e_stop="45997" e_length="236"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.899">
            <gDNA_intron_boundary i_start="45996" i_stop="45744" i_length="253"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="45743" e_stop="45279" e_length="465"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48875" stop="48640"/>
              <exon start="48179" stop="48105"/>
              <exon start="46970" stop="46827"/>
              <exon start="46702" stop="46482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46510" stop="46313"/>
              <exon start="46232" stop="45997"/>
              <exon start="45743" stop="45279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332466" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCAATTACACCGGATTCCGCCGGAGAACCACCGCGATGGCGCCGGTGAGAACTGCAGGCGCCATCGCGACGCTGATCTCCGTAGCCATAGTCTCTTATTTCCTCTGTAAAACTACTCAGCAAAAGTCTTCCGGAAAAAAGAAACTTCAAGGACGTAGAACTGGACTCGTCGCCGCCATTGGCAACACTCCGTTAATCAGAATCAATACCCTCTCCGATGCAACTGGCTGTGAA : ATTTTGGGGAAAGCTGAATTCTTGAATCCTGGAGGGAGTGTGAAAGATAGGGTAGCTGTGAAGATAATTGAAGAG : GCCCTGGAATCTGGAGCGTTAGCTGAAGGTGGAGTAGTTACAGAGGGCAGTGCAGGAAGTACAGCCATTAGTCTAGCAACAGTAGCACCTGCTTATGGGTGCAGATGCCATGTGGTTATCCCAGATGATGCTGCTCTTGAAAAG : GCACAAATACTAGAAGCACTAGGAGCTACTGTAGAAAGGGTGAGGCCAGTTTCTATCACACACCGAGACCATTTTGTTAATATTGCAAGAAGAAGGGCGCTGGAAGCAAGTGAAATAACATCAACCACCAGAAAAGAAAGCCAAATTGATGCCAATGATTCTAGTCAAATCAATGGTCACTCAATCAGTGAGGAAAAGCAGAATATGCAGTTCTCATCTGAATGCAAGGGTGGATTCTTCGCAGATCAGTTTGAAAATCTTGCAAATTTCAGGTCACATTATGAGGGCACGGGGCCAGAGATTTGGGAACAGACAGGTGGCAATTTGGATGCTTTTATTGCTGCTGCAGGTACAGGTGGCACTGTTGCCGGTGTTTCCCAGTATTTGAAG : GACAAAAACTCAAATATCAAGTGCTTCCTTATTGATCCTCCTGGCTCTGGTTTATATAACAAAGTAACAAGGGGAGTTATGTACACAAGGGAAGAAGCCGAAGGAAGAAGGCTGAAGAACCCGTTTGATACAATAACCGAAGGGATTGGAATAAATAGACTAACTGAAAATTTTAAGATGGCAAAACTTGATGGAGCTTTCCGAGGCACAGATATGGAAGCTGTTGAAATGTCCAG : GTATCTGTTGAAAAATGATGGTCTATTTATTGGAAGTTCTTCAGCGATGAATTGCGTTGGAGCTGTCAGAGTGGCAAAGGCACTAGGTCCAGGGCATACAATTGTGACAATCTTGTGTGACAGTGGTATGAGACACTTGAGTAAGTTTCACAATGATAAATACCTATCTGAACATGGGTTGACACCTTCAGCAACTGGTCTGGAGTTCCTTCGTCTTAGTTGATCTATGGCTAGTTCACGATTGTTTTTCGGGGCATTTAAATTCATGACAGTACCATCTCAGAGCTAATATTGTATATACTATGGTAGGAAAAGGAAGTTTTGATAATTTTTTATAAGTTTAACATCGTTTGTGTATGTCAGCTTGATAGAGAATATTAGAGGCAGGCTCTAATTGTTTTGATCTAATTTTGTAATGTTTAACTTTCTTATTTGATAAAAACCTATCTCAATCAAGAGCTTTTG</gDNA_template>
            <first_frame> V  S  I  T  P  D  S  A  G  E  P  P  R  W  R  R  *  E  L  Q  A  P  S  R  R  *  S  P  *  P  *  S  L  I  S  S  V  K  L  L  S  K  S  L  P  E  K  R  N  F  K  D  V  E  L  D  S  S  P  P  L  A  T  L  R  *  S  E  S  I  P  S  P  M  Q  L  A  V  K :   F  W  G  K  L  N  S  *  I  L  E  G  V  *  K  I  G  *  L  *  R  *  L  K  R :   P  W  N  L  E  R  *  L  K  V  E  *  L  Q  R  A  V  Q  E  V  Q  P  L  V  *  Q  Q  *  H  L  L  M  G  A  D  A  M  W  L  S  Q  M  M  L  L  L  K  R :   H  K  Y  *  K  H  *  E  L  L  *  K  G  *  G  Q  F  L  S  H  T  E  T  I  L  L  I  L  Q  E  E  G  R  W  K  Q  V  K  *  H  Q  P  P  E  K  K  A  K  L  M  P  M  I  L  V  K  S  M  V  T  Q  S  V  R  K  S  R  I  C  S  S  H  L  N  A  R  V  D  S  S  Q  I  S  L  K  I  L  Q  I  S  G  H  I  M  R  A  R  G  Q  R  F  G  N  R  Q  V  A  I  W  M  L  L  L  L  L  Q  V  Q  V  A  L  L  P  V  F  P  S  I  *  R :   T  K  T  Q  I  S  S  A  S  L  L  I  L  L  A  L  V  Y  I  T  K  *  Q  G  E  L  C  T  Q  G  K  K  P  K  E  E  G  *  R  T  R  L  I  Q  *  P  K  G  L  E  *  I  D  *  L  K  I  L  R  W  Q  N  L  M  E  L  S  E  A  Q  I  W  K  L  L  K  C  P   : G  I  C  *  K  M  M  V  Y  L  L  E  V  L  Q  R  *  I  A  L  E  L  S  E  W  Q  R  H  *  V  Q  G  I  Q  L  *  Q  S  C  V  T  V  V  *  D  T  *  V  S  F  T  M  I  N  T  Y  L  N  M  G  *  H  L  Q  Q  L  V  W  S  S  F  V  L  V  D  L  W  L  V  H  D  C  F  S  G  H  L  N  S  *  Q  Y  H  L  R  A  N  I  V  Y  T  M  V  G  K  G  S  F  D  N  F  L  *  V  *  H  R  L  C  M  S  A  *  *  R  I  L  E  A  G  S  N  C  F  D  L  I  L  *  C  L  T  F  L  F  D  K  N  L  S  Q  S  R  A  F  </first_frame>
            <second_frame>  F  Q  L  H  R  I  P  P  E  N  H  R  D  G  A  G  E  N  C  R  R  H  R  D  A  D  L  R  S  H  S  L  L  F  P  L  *  N  Y  S  A  K  V  F  R  K  K  E  T  S  R  T  *  N  W  T  R  R  R  H  W  Q  H  S  V  N  Q  N  Q  Y  P  L  R  C  N  W  L  *   : N  F  G  E  S  *  I  L  E  S  W  R  E  C  E  R  *  G  S  C  E  D  N  *  R   : G  P  G  I  W  S  V  S  *  R  W  S  S  Y  R  G  Q  C  R  K  Y  S  H  *  S  S  N  S  S  T  C  L  W  V  Q  M  P  C  G  Y  P  R  *  C  C  S  *  K   : G  T  N  T  R  S  T  R  S  Y  C  R  K  G  E  A  S  F  Y  H  T  P  R  P  F  C  *  Y  C  K  K  K  G  A  G  S  K  *  N  N  I  N  H  Q  K  R  K  P  N  *  C  Q  *  F  *  S  N  Q  W  S  L  N  Q  *  G  K  A  E  Y  A  V  L  I  *  M  Q  G  W  I  L  R  R  S  V  *  K  S  C  K  F  Q  V  T  L  *  G  H  G  A  R  D  L  G  T  D  R  W  Q  F  G  C  F  Y  C  C  C  R  Y  R  W  H  C  C  R  C  F  P  V  F  E   : G  Q  K  L  K  Y  Q  V  L  P  Y  *  S  S  W  L  W  F  I  *  Q  S  N  K  G  S  Y  V  H  K  G  R  S  R  R  K  K  A  E  E  P  V  *  Y  N  N  R  R  D  W  N  K  *  T  N  *  K  F  *  D  G  K  T  *  W  S  F  P  R  H  R  Y  G  S  C  *  N  V  Q  :  V  S  V  E  K  *  W  S  I  Y  W  K  F  F  S  D  E  L  R  W  S  C  Q  S  G  K  G  T  R  S  R  A  Y  N  C  D  N  L  V  *  Q  W  Y  E  T  L  E  *  V  S  Q  *  *  I  P  I  *  T  W  V  D  T  F  S  N  W  S  G  V  P  S  S  *  L  I  Y  G  *  F  T  I  V  F  R  G  I  *  I  H  D  S  T  I  S  E  L  I  L  Y  I  L  W  *  E  K  E  V  L  I  I  F  Y  K  F  N  I  V  C  V  C  Q  L  D  R  E  Y  *  R  Q  A  L  I  V  L  I  *  F  C  N  V  *  L  S  Y  L  I  K  T  Y  L  N  Q  E  L  L </second_frame>
            <third_frame>   F  N  Y  T  G  F  R  R  R  T  T  A  M  A  P  V  R  T  A  G  A  I  A  T  L  I  S  V  A  I  V  S  Y  F  L  C  K  T  T  Q  Q  K  S  S  G  K  K  K  L  Q  G  R  R  T  G  L  V  A  A  I  G  N  T  P  L  I  R  I  N  T  L  S  D  A  T  G  C  E  :  I  L  G  K  A  E  F  L  N  P  G  G  S  V  K  D  R  V  A  V  K  I  I  E  E  :  A  L  E  S  G  A  L  A  E  G  G  V  V  T  E  G  S  A  G  S  T  A  I  S  L  A  T  V  A  P  A  Y  G  C  R  C  H  V  V  I  P  D  D  A  A  L  E  K  :  A  Q  I  L  E  A  L  G  A  T  V  E  R  V  R  P  V  S  I  T  H  R  D  H  F  V  N  I  A  R  R  R  A  L  E  A  S  E  I  T  S  T  T  R  K  E  S  Q  I  D  A  N  D  S  S  Q  I  N  G  H  S  I  S  E  E  K  Q  N  M  Q  F  S  S  E  C  K  G  G  F  F  A  D  Q  F  E  N  L  A  N  F  R  S  H  Y  E  G  T  G  P  E  I  W  E  Q  T  G  G  N  L  D  A  F  I  A  A  A  G  T  G  G  T  V  A  G  V  S  Q  Y  L  K  :  D  K  N  S  N  I  K  C  F  L  I  D  P  P  G  S  G  L  Y  N  K  V  T  R  G  V  M  Y  T  R  E  E  A  E  G  R  R  L  K  N  P  F  D  T  I  T  E  G  I  G  I  N  R  L  T  E  N  F  K  M  A  K  L  D  G  A  F  R  G  T  D  M  E  A  V  E  M  S  R :   Y  L  L  K  N  D  G  L  F  I  G  S  S  S  A  M  N  C  V  G  A  V  R  V  A  K  A  L  G  P  G  H  T  I  V  T  I  L  C  D  S  G  M  R  H  L  S  K  F  H  N  D  K  Y  L  S  E  H  G  L  T  P  S  A  T  G  L  E  F  L  R  L  S  *  S  M  A  S  S  R  L  F  F  G  A  F  K  F  M  T  V  P  S  Q  S  *  Y  C  I  Y  Y  G  R  K  R  K  F  *  *  F  F  I  S  L  T  S  F  V  Y  V  S  L  I  E  N  I  R  G  R  L  *  L  F  *  S  N  F  V  M  F  N  F  L  I  *  *  K  P  I  S  I  K  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48873" stop="48640"/>
                    <exon start="48179" stop="48105"/>
                    <exon start="46970" stop="46827"/>
                    <exon start="46702" stop="46313"/>
                    <exon start="46232" stop="45997"/>
                    <exon start="45743" stop="45521"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1299</number_coding_nucleotides>
                  <number_encoded_amino_acids>433</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNYTGFRRRTTAMAPVRTAGAIATLISVAIVSYFLCKTTQQKSSGKKKLQGRRTGLVAAIGNTPLIRINTLSDATGCEILGKAEFLNPGGSVKDRVAVKIIEEALESGALAEGGVVTEGSAGSTAISLATVAPAYGCRCHVVIPDDAALEKAQILEALGATVERVRPVSITHRDHFVNIARRRALEASEITSTTRKESQIDANDSSQINGHSISEEKQNMQFSSECKGGFFADQFENLANFRSHYEGTGPEIWEQTGGNLDAFIAAAGTGGTVAGVSQYLKDKNSNIKCFLIDPPGSGLYNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTENFKMAKLDGAFRGTDMEAVEMSRYLLKNDGLFIGSSSAMNCVGAVRVAKALGPGHTIVTILCDSGMRHLSKFHNDKYLSEHGLTPSATGLEFLRLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="51617" PGL_stop="52181"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51617" e_stop="52181"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="51617" e_stop="52181" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51617" stop="52181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328763" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATATTTCATTACTTCGAATTCTTCCGCCATGGAAATCCAAAAATTGCTTCTCAAATTCAAATTCCACATCTTAATTGCATCTAGTTTTACGATTTTCATCTTCGCTCTTATTTACCTAGCACCTCGATTTCTCGATGTTGTTAAGTATTTTTGGCCTCTCTTACTCTCTACTGCTCTCTTCCTAATCGCCGTCGTTCTCTTTGGATGGATTTCTCCGCCGGTATCTGAGGTTTCCGGTGAGAAAACCGGTGAAGGTATTTTGGAATTCGTAGCGGGTCAACCCGAAGAACAATTACAAACGCATCTACATGATTTACATGAACATGAAGGAGACGGAGAAGATGAAGAAGGTGAAAGTAGTAAAGTAGAGTGAAGTGAAATTAATGGTTTATTTTCTGTTTTTTTTTTTCAGTTAGATACTTTTTTTTTCTTTTTAAATTTTTGTATATTTTCTGAATAATGTTAACTTGCATTATTGGCCTGCACCTTACCTTTGGGGCCTTTCTTTTGATTATGAATTCGGAGTTTGAAATTAATGAATTTTGAATTTTAGTCTTTCAC</gDNA_template>
            <first_frame> Q  N  I  S  L  L  R  I  L  P  P  W  K  S  K  N  C  F  S  N  S  N  S  T  S  *  L  H  L  V  L  R  F  S  S  S  L  L  F  T  *  H  L  D  F  S  M  L  L  S  I  F  G  L  S  Y  S  L  L  L  S  S  *  S  P  S  F  S  L  D  G  F  L  R  R  Y  L  R  F  P  V  R  K  P  V  K  V  F  W  N  S  *  R  V  N  P  K  N  N  Y  K  R  I  Y  M  I  Y  M  N  M  K  E  T  E  K  M  K  K  V  K  V  V  K  *  S  E  V  K  L  M  V  Y  F  L  F  F  F  F  S  *  I  L  F  F  S  F  *  I  F  V  Y  F  L  N  N  V  N  L  H  Y  W  P  A  P  Y  L  W  G  L  S  F  D  Y  E  F  G  V  *  N  *  *  I  L  N  F  S  L  S  </first_frame>
            <second_frame>  K  I  F  H  Y  F  E  F  F  R  H  G  N  P  K  I  A  S  Q  I  Q  I  P  H  L  N  C  I  *  F  Y  D  F  H  L  R  S  Y  L  P  S  T  S  I  S  R  C  C  *  V  F  L  A  S  L  T  L  Y  C  S  L  P  N  R  R  R  S  L  W  M  D  F  S  A  G  I  *  G  F  R  *  E  N  R  *  R  Y  F  G  I  R  S  G  S  T  R  R  T  I  T  N  A  S  T  *  F  T  *  T  *  R  R  R  R  R  *  R  R  *  K  *  *  S  R  V  K  *  N  *  W  F  I  F  C  F  F  F  S  V  R  Y  F  F  F  L  F  K  F  L  Y  I  F  *  I  M  L  T  C  I  I  G  L  H  L  T  F  G  A  F  L  L  I  M  N  S  E  F  E  I  N  E  F  *  I  L  V  F  H </second_frame>
            <third_frame>   K  Y  F  I  T  S  N  S  S  A  M  E  I  Q  K  L  L  L  K  F  K  F  H  I  L  I  A  S  S  F  T  I  F  I  F  A  L  I  Y  L  A  P  R  F  L  D  V  V  K  Y  F  W  P  L  L  L  S  T  A  L  F  L  I  A  V  V  L  F  G  W  I  S  P  P  V  S  E  V  S  G  E  K  T  G  E  G  I  L  E  F  V  A  G  Q  P  E  E  Q  L  Q  T  H  L  H  D  L  H  E  H  E  G  D  G  E  D  E  E  G  E  S  S  K  V  E  *  S  E  I  N  G  L  F  S  V  F  F  F  Q  L  D  T  F  F  F  F  L  N  F  C  I  F  S  E  *  C  *  L  A  L  L  A  C  T  L  P  L  G  P  F  F  *  L  *  I  R  S  L  K  L  M  N  F  E  F  *  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51619" stop="51993"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYFITSNSSAMEIQKLLLKFKFHILIASSFTIFIFALIYLAPRFLDVVKYFWPLLLSTALFLIAVVLFGWISPPVSEVSGEKTGEGILEFVAGQPEEQLQTHLHDLHEHEGDGEDEEGESSKVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="69805" PGL_stop="70459"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69805" e_stop="70459"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="69805" e_stop="70459" e_length="655"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69805" stop="70459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346072" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCACCAAAAACACTTCCTTCTAAACCACGAAATGTGGTTGCTCCAGATAGTTCGTCACCCAGGTTACCTCCTACTCCAGTTCTATTACAACAACCATCTCACAAAAAGGGTCAATGGAAATCCACAAAACTCTTTCGTCGTGTAAAGTCAGTTTTCCGTTCATTCCCTGTAATAAACCCTCCTTGCAAAATGCCAGTTTCTAACCGTCTGCACGAAGGTCATATCCATGGAGGTAAACAGATGACAGGTACTCTTTTTGGTTTTCGAAAAGCTAGAGTTAATCTTTCAATTCAAGAGAATCCAAGGGGTGTTCCATTGCTTGTACTTGAACTGTCCATACAAACAGGTAAACTCCTCCAGGATATGGGATCAGGACTAGTGAGAATTGCTCTCGAGTGTGAAAAGAATCACTCGGAGAAACTCAAACTCATCGATGAACCTATATGGACTATGTATTGCAATGGACGTAAAGTTGGGTATGCAGTAAAAAGAGGACCTACAGAAGATGATCTTAAAGTAATGCAGAATTTGCATGCTGTATCAATGGGAGCTGGCGTTCTACCATCCGAGTCCTCGGAGGGAGAACTCACGTATATGAGAGCTTTCTTTGAACGAACAGTTGGATCAAAGGACTCAGAGACGTACTATATGATG</gDNA_template>
            <first_frame> I  T  K  N  T  S  F  *  T  T  K  C  G  C  S  R  *  F  V  T  Q  V  T  S  Y  S  S  S  I  T  T  T  I  S  Q  K  G  S  M  E  I  H  K  T  L  S  S  C  K  V  S  F  P  F  I  P  C  N  K  P  S  L  Q  N  A  S  F  *  P  S  A  R  R  S  Y  P  W  R  *  T  D  D  R  Y  S  F  W  F  S  K  S  *  S  *  S  F  N  S  R  E  S  K  G  C  S  I  A  C  T  *  T  V  H  T  N  R  *  T  P  P  G  Y  G  I  R  T  S  E  N  C  S  R  V  *  K  E  S  L  G  E  T  Q  T  H  R  *  T  Y  M  D  Y  V  L  Q  W  T  *  S  W  V  C  S  K  K  R  T  Y  R  R  *  S  *  S  N  A  E  F  A  C  C  I  N  G  S  W  R  S  T  I  R  V  L  G  G  R  T  H  V  Y  E  S  F  L  *  T  N  S  W  I  K  G  L  R  D  V  L  Y  D  </first_frame>
            <second_frame>  S  P  K  T  L  P  S  K  P  R  N  V  V  A  P  D  S  S  S  P  R  L  P  P  T  P  V  L  L  Q  Q  P  S  H  K  K  G  Q  W  K  S  T  K  L  F  R  R  V  K  S  V  F  R  S  F  P  V  I  N  P  P  C  K  M  P  V  S  N  R  L  H  E  G  H  I  H  G  G  K  Q  M  T  G  T  L  F  G  F  R  K  A  R  V  N  L  S  I  Q  E  N  P  R  G  V  P  L  L  V  L  E  L  S  I  Q  T  G  K  L  L  Q  D  M  G  S  G  L  V  R  I  A  L  E  C  E  K  N  H  S  E  K  L  K  L  I  D  E  P  I  W  T  M  Y  C  N  G  R  K  V  G  Y  A  V  K  R  G  P  T  E  D  D  L  K  V  M  Q  N  L  H  A  V  S  M  G  A  G  V  L  P  S  E  S  S  E  G  E  L  T  Y  M  R  A  F  F  E  R  T  V  G  S  K  D  S  E  T  Y  Y  M  M </second_frame>
            <third_frame>   H  Q  K  H  F  L  L  N  H  E  M  W  L  L  Q  I  V  R  H  P  G  Y  L  L  L  Q  F  Y  Y  N  N  H  L  T  K  R  V  N  G  N  P  Q  N  S  F  V  V  *  S  Q  F  S  V  H  S  L  *  *  T  L  L  A  K  C  Q  F  L  T  V  C  T  K  V  I  S  M  E  V  N  R  *  Q  V  L  F  L  V  F  E  K  L  E  L  I  F  Q  F  K  R  I  Q  G  V  F  H  C  L  Y  L  N  C  P  Y  K  Q  V  N  S  S  R  I  W  D  Q  D  *  *  E  L  L  S  S  V  K  R  I  T  R  R  N  S  N  S  S  M  N  L  Y  G  L  C  I  A  M  D  V  K  L  G  M  Q  *  K  E  D  L  Q  K  M  I  L  K  *  C  R  I  C  M  L  Y  Q  W  E  L  A  F  Y  H  P  S  P  R  R  E  N  S  R  I  *  E  L  S  L  N  E  Q  L  D  Q  R  T  Q  R  R  T  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69806" stop="70459"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPKTLPSKPRNVVAPDSSSPRLPPTPVLLQQPSHKKGQWKSTKLFRRVKSVFRSFPVINPPCKMPVSNRLHEGHIHGGKQMTGTLFGFRKARVNLSIQENPRGVPLLVLELSIQTGKLLQDMGSGLVRIALECEKNHSEKLKLIDEPIWTMYCNGRKVGYAVKRGPTEDDLKVMQNLHAVSMGAGVLPSESSEGELTYMRAFFERTVGSKDSETYYMM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="89593" PGL_stop="91981"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89593" e_stop="90186"/>
            <exon e_start="91106" e_stop="91155"/>
            <exon e_start="91307" e_stop="91981"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="0.998"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="89593" e_stop="90186" e_length="594"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90187" i_stop="91105" i_length="919"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91106" e_stop="91155" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="91156" i_stop="91306" i_length="151"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="91307" e_stop="91981" e_length="675"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89593" stop="90186"/>
              <exon start="91106" stop="91155"/>
              <exon start="91307" stop="91981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319990" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTCTCTCTCATGTCTTAATCTCTTTGTCCTGCAGTACTACATCAACTTCTCCAAATATATTTCTATAAAAGTCTCCAATTTTTTTTTTCATTCCAATGATTTTCTCTAAACCCAAATGGCACGTTTACACTTGTTTCTTGTTCTTTTTCTTCTTCTCATTATCTCCGCCGCCGCACACGGCGGAGCACACGGCGGGGATCATGACGGAGATGCTGACTCAGATTCCGACTTATCTGAACAATCTGACAAACCCCATTTGAGATCTCGGCCATTGGTTTTAGTGAAGATATGGTGTTTGATAATAGTCTTCTTTGCGACTTTTATTGGTGGGGTTTCACCTTATTTCATGAAATGGAATGAGGGGTTTTTGGTTCTTGGAACACAATTTGCTGGTGGGGTTTTCTTGGGAACTGCGCTTATGCATTTTTTAAGTGATGCTAATGAGACTTTTGGGGAATTGACAAGTAAAGAATACCCTTTTGCTTATATGTTGGCATGTGCTGGTTATTTGATGACTATGTTAGCTGATTCTGTTATCTGTTTTGTTTATGCTAAGCAGAACAACAACAACAATGATGTGCAGCTCCAAG : ATACTGAAAATGGAAAAAGCAATGGAGCAGTCGCACAGGGGCAGTCACAG : GTCTCTGATGGCAGAGAAAATGACTATTCAAAAGCACCTCTTGCAACAGCTTCTTCACTTGGTGATAGCATCTTATTGATCGTTGCACTATGTTTCCATTCCGTCTTTGAGGGAATAGCCATTGGTGTTGCAGATTCACAAGCCGATGCTTGGAGAGCTCTTTGGACTGTAAGTTTACACAAGATATTTGCTGCTATTGCAATGGGAATAGCTCTACTTAGGATGATCCCAAATCGCCCTTTACTATCATGCGCGGCCTATGCTTTTGCCTTTGCCATCTCTAGTCCAATTGGCGTTGCCATCGGAATCATAATCGATGCCACAACTCAAGGGGTTGTTGCAGACTGGATCTTTGCAATATCAATGGGATTGGCTTGTGGGGTTTTTATATTTGTATCCATTAATCATTTGCTTTCTAAGGGATACAAGCCTCAAAAAATGGTCAAGATTGACAAGCCTCATTTCAAGTTTTTGGCTGTTTTGTTAGGTGTTGGGATAATTGCTGTGGTGATGATATGGGACACTTGAGTTTGTGCTTTGATGATTATTTTGGCAGAAGTAGCATAATAGTTTACCATTTTATATTGAGAATACTTTTGTTTAAAAATATTTATATACGAGAGTGAAAAGTTGTGATTCTTATTCAAATGAAATTTTTTTCAAGAATATCAAAGT</gDNA_template>
            <first_frame> F  S  L  S  H  V  L  I  S  L  S  C  S  T  T  S  T  S  P  N  I  F  L  *  K  S  P  I  F  F  F  I  P  M  I  F  S  K  P  K  W  H  V  Y  T  C  F  L  F  F  F  F  F  S  L  S  P  P  P  H  T  A  E  H  T  A  G  I  M  T  E  M  L  T  Q  I  P  T  Y  L  N  N  L  T  N  P  I  *  D  L  G  H  W  F  *  *  R  Y  G  V  *  *  *  S  S  L  R  L  L  L  V  G  F  H  L  I  S  *  N  G  M  R  G  F  W  F  L  E  H  N  L  L  V  G  F  S  W  E  L  R  L  C  I  F  *  V  M  L  M  R  L  L  G  N  *  Q  V  K  N  T  L  L  L  I  C  W  H  V  L  V  I  *  *  L  C  *  L  I  L  L  S  V  L  F  M  L  S  R  T  T  T  T  M  M  C  S  S  K  :  I  L  K  M  E  K  A  M  E  Q  S  H  R  G  S  H  R :   S  L  M  A  E  K  M  T  I  Q  K  H  L  L  Q  Q  L  L  H  L  V  I  A  S  Y  *  S  L  H  Y  V  S  I  P  S  L  R  E  *  P  L  V  L  Q  I  H  K  P  M  L  G  E  L  F  G  L  *  V  Y  T  R  Y  L  L  L  L  Q  W  E  *  L  Y  L  G  *  S  Q  I  A  L  Y  Y  H  A  R  P  M  L  L  P  L  P  S  L  V  Q  L  A  L  P  S  E  S  *  S  M  P  Q  L  K  G  L  L  Q  T  G  S  L  Q  Y  Q  W  D  W  L  V  G  F  L  Y  L  Y  P  L  I  I  C  F  L  R  D  T  S  L  K  K  W  S  R  L  T  S  L  I  S  S  F  W  L  F  C  *  V  L  G  *  L  L  W  *  *  Y  G  T  L  E  F  V  L  *  *  L  F  W  Q  K  *  H  N  S  L  P  F  Y  I  E  N  T  F  V  *  K  Y  L  Y  T  R  V  K  S  C  D  S  Y  S  N  E  I  F  F  K  N  I  K   </first_frame>
            <second_frame>  F  L  S  L  M  S  *  S  L  C  P  A  V  L  H  Q  L  L  Q  I  Y  F  Y  K  S  L  Q  F  F  F  S  F  Q  *  F  S  L  N  P  N  G  T  F  T  L  V  S  C  S  F  S  S  S  H  Y  L  R  R  R  T  R  R  S  T  R  R  G  S  *  R  R  C  *  L  R  F  R  L  I  *  T  I  *  Q  T  P  F  E  I  S  A  I  G  F  S  E  D  M  V  F  D  N  S  L  L  C  D  F  Y  W  W  G  F  T  L  F  H  E  M  E  *  G  V  F  G  S  W  N  T  I  C  W  W  G  F  L  G  N  C  A  Y  A  F  F  K  *  C  *  *  D  F  W  G  I  D  K  *  R  I  P  F  C  L  Y  V  G  M  C  W  L  F  D  D  Y  V  S  *  F  C  Y  L  F  C  L  C  *  A  E  Q  Q  Q  Q  *  C  A  A  P  R :   Y  *  K  W  K  K  Q  W  S  S  R  T  G  A  V  T   : G  L  *  W  Q  R  K  *  L  F  K  S  T  S  C  N  S  F  F  T  W  *  *  H  L  I  D  R  C  T  M  F  P  F  R  L  *  G  N  S  H  W  C  C  R  F  T  S  R  C  L  E  S  S  L  D  C  K  F  T  Q  D  I  C  C  Y  C  N  G  N  S  S  T  *  D  D  P  K  S  P  F  T  I  M  R  G  L  C  F  C  L  C  H  L  *  S  N  W  R  C  H  R  N  H  N  R  C  H  N  S  R  G  C  C  R  L  D  L  C  N  I  N  G  I  G  L  W  G  F  Y  I  C  I  H  *  S  F  A  F  *  G  I  Q  A  S  K  N  G  Q  D  *  Q  A  S  F  Q  V  F  G  C  F  V  R  C  W  D  N  C  C  G  D  D  M  G  H  L  S  L  C  F  D  D  Y  F  G  R  S  S  I  I  V  Y  H  F  I  L  R  I  L  L  F  K  N  I  Y  I  R  E  *  K  V  V  I  L  I  Q  M  K  F  F  S  R  I  S  K  </second_frame>
            <third_frame>   F  S  L  S  C  L  N  L  F  V  L  Q  Y  Y  I  N  F  S  K  Y  I  S  I  K  V  S  N  F  F  F  H  S  N  D  F  L  *  T  Q  M  A  R  L  H  L  F  L  V  L  F  L  L  L  I  I  S  A  A  A  H  G  G  A  H  G  G  D  H  D  G  D  A  D  S  D  S  D  L  S  E  Q  S  D  K  P  H  L  R  S  R  P  L  V  L  V  K  I  W  C  L  I  I  V  F  F  A  T  F  I  G  G  V  S  P  Y  F  M  K  W  N  E  G  F  L  V  L  G  T  Q  F  A  G  G  V  F  L  G  T  A  L  M  H  F  L  S  D  A  N  E  T  F  G  E  L  T  S  K  E  Y  P  F  A  Y  M  L  A  C  A  G  Y  L  M  T  M  L  A  D  S  V  I  C  F  V  Y  A  K  Q  N  N  N  N  N  D  V  Q  L  Q   : D  T  E  N  G  K  S  N  G  A  V  A  Q  G  Q  S  Q  :  V  S  D  G  R  E  N  D  Y  S  K  A  P  L  A  T  A  S  S  L  G  D  S  I  L  L  I  V  A  L  C  F  H  S  V  F  E  G  I  A  I  G  V  A  D  S  Q  A  D  A  W  R  A  L  W  T  V  S  L  H  K  I  F  A  A  I  A  M  G  I  A  L  L  R  M  I  P  N  R  P  L  L  S  C  A  A  Y  A  F  A  F  A  I  S  S  P  I  G  V  A  I  G  I  I  I  D  A  T  T  Q  G  V  V  A  D  W  I  F  A  I  S  M  G  L  A  C  G  V  F  I  F  V  S  I  N  H  L  L  S  K  G  Y  K  P  Q  K  M  V  K  I  D  K  P  H  F  K  F  L  A  V  L  L  G  V  G  I  I  A  V  V  M  I  W  D  T  *  V  C  A  L  M  I  I  L  A  E  V  A  *  *  F  T  I  L  Y  *  E  Y  F  C  L  K  I  F  I  Y  E  S  E  K  L  *  F  L  F  K  *  N  F  F  Q  E  Y  Q  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89706" stop="90186"/>
                    <exon start="91106" stop="91155"/>
                    <exon start="91307" stop="91834"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1056</number_coding_nucleotides>
                  <number_encoded_amino_acids>352</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQMARLHLFLVLFLLLIISAAAHGGAHGGDHDGDADSDSDLSEQSDKPHLRSRPLVLVKIWCLIIVFFATFIGGVSPYFMKWNEGFLVLGTQFAGGVFLGTALMHFLSDANETFGELTSKEYPFAYMLACAGYLMTMLADSVICFVYAKQNNNNNDVQLQDTENGKSNGAVAQGQSQVSDGRENDYSKAPLATASSLGDSILLIVALCFHSVFEGIAIGVADSQADAWRALWTVSLHKIFAAIAMGIALLRMIPNRPLLSCAAYAFAFAISSPIGVAIGIIIDATTQGVVADWIFAISMGLACGVFIFVSINHLLSKGYKPQKMVKIDKPHFKFLAVLLGVGIIAVVMIWDT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90261" e_stop="90823"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="90261" e_stop="90823" e_length="563"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90261" stop="90823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328829" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGCTTTGCTGTATCTGAATTGTAGTTTTGGTAAGAGGAATTAGTTCTGATTTAGTTTTGATATGTAATTCAGCTCGAATGAAGTTAAAGGAAGGCAAAGATGAGAACTTTGAATTATTAGAAAAGAGTAGTAGGCATAATATTACGATAGTCTTGTCCGCTAGCAAATCAATGTTGTAGTAGCTAGCGAAGTTTGTCAAACATATTGGCGTGGACAAGTACTCGAATTTAATCATATTTGTGTTTGGAGTGGTTTTATAGTTCCATTTGCTGTTTGATAGGATATGTTGTTTGTTTGATGCTGAAATATTGAAGAAAGTAAAAAAATTATGTGCTAAACTTTCTTGCTTTTCTAGTTTATTGGAGCTTTTCTTAAAATCTGATACTTTTGTTTCTGAAGCATCTTGCACCTAATTTTGAGTTTGACTGTAGAACTTTTTACTAGCTTCCAAGTTATGTCTAATCTGAGTAGTAGGAGAGTTCCATGGTCGATGATGTTTAAGGCAATGCGAAGTTGAGTTCTGTTTTAGCTTGAGATCAACTGGAAATTTTGTTGATTTCTT</gDNA_template>
            <first_frame> Q  L  C  C  I  *  I  V  V  L  V  R  G  I  S  S  D  L  V  L  I  C  N  S  A  R  M  K  L  K  E  G  K  D  E  N  F  E  L  L  E  K  S  S  R  H  N  I  T  I  V  L  S  A  S  K  S  M  L  *  *  L  A  K  F  V  K  H  I  G  V  D  K  Y  S  N  L  I  I  F  V  F  G  V  V  L  *  F  H  L  L  F  D  R  I  C  C  L  F  D  A  E  I  L  K  K  V  K  K  L  C  A  K  L  S  C  F  S  S  L  L  E  L  F  L  K  S  D  T  F  V  S  E  A  S  C  T  *  F  *  V  *  L  *  N  F  L  L  A  S  K  L  C  L  I  *  V  V  G  E  F  H  G  R  *  C  L  R  Q  C  E  V  E  F  C  F  S  L  R  S  T  G  N  F  V  D  F   </first_frame>
            <second_frame>  S  F  A  V  S  E  L  *  F  W  *  E  E  L  V  L  I  *  F  *  Y  V  I  Q  L  E  *  S  *  R  K  A  K  M  R  T  L  N  Y  *  K  R  V  V  G  I  I  L  R  *  S  C  P  L  A  N  Q  C  C  S  S  *  R  S  L  S  N  I  L  A  W  T  S  T  R  I  *  S  Y  L  C  L  E  W  F  Y  S  S  I  C  C  L  I  G  Y  V  V  C  L  M  L  K  Y  *  R  K  *  K  N  Y  V  L  N  F  L  A  F  L  V  Y  W  S  F  S  *  N  L  I  L  L  F  L  K  H  L  A  P  N  F  E  F  D  C  R  T  F  Y  *  L  P  S  Y  V  *  S  E  *  *  E  S  S  M  V  D  D  V  *  G  N  A  K  L  S  S  V  L  A  *  D  Q  L  E  I  L  L  I  S  </second_frame>
            <third_frame>   A  L  L  Y  L  N  C  S  F  G  K  R  N  *  F  *  F  S  F  D  M  *  F  S  S  N  E  V  K  G  R  Q  R  *  E  L  *  I  I  R  K  E  *  *  A  *  Y  Y  D  S  L  V  R  *  Q  I  N  V  V  V  A  S  E  V  C  Q  T  Y  W  R  G  Q  V  L  E  F  N  H  I  C  V  W  S  G  F  I  V  P  F  A  V  *  *  D  M  L  F  V  *  C  *  N  I  E  E  S  K  K  I  M  C  *  T  F  L  L  F  *  F  I  G  A  F  L  K  I  *  Y  F  C  F  *  S  I  L  H  L  I  L  S  L  T  V  E  L  F  T  S  F  Q  V  M  S  N  L  S  S  R  R  V  P  W  S  M  M  F  K  A  M  R  S  *  V  L  F  *  L  E  I  N  W  K  F  C  *  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0033E17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="97370" PGL_stop="98409"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97370" e_stop="97584"/>
            <exon e_start="97749" e_stop="97965"/>
            <exon e_start="98056" e_stop="98409"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97370" e_stop="97584" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.985">
            <gDNA_intron_boundary i_start="97585" i_stop="97748" i_length="164"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97749" e_stop="97965" e_length="217"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.995">
            <gDNA_intron_boundary i_start="97966" i_stop="98055" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98056" e_stop="98409" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97370" stop="97584"/>
              <exon start="97749" stop="97965"/>
              <exon start="98056" stop="98409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324642" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTTTAAGCAGGAAATTTTACTCCAATAAGCATGTTGGAAGTGAGCTCTGGTATGCTCCTAAGTTAGTGGTTAACGAGAAGATAGAATGTCTGAGCCAAGATAGTGGGATCCGTGGCTGCTGGTTCAGATGCACTATTGTGGAAATATCCCGGAGACAGATGAAGATAAAGTATGATGATATTAAGGATGAAGATGGATGTGGAAACCTTGAG : GAATGGATCCCTACATTTAGACTAGCCAAGCCTGATAAACTTGGAATGAGAAACTCTAACCGTCCAACAATCAGGCCTTCCCGCTCTTGTGACCTGGAAGATCTTGCCTTTGATGTGGGAGCACCTATTGATGCCTGGTGGAGTGATGGTTGGTGGGAAGGAATAATTGTCGACGCAGACAAATCAGAAAAGGAAACCTATAGAGTTTATGTTCCTG : GTGAGAGGATGTTCTTGAATATAGATAGGAAGAATCTAAGAATCTCAAGGGATTGGGTGGGAGATCGATGGGTAGATATCGAGACAAACAGAGACATTCTTTCAATGATATCTTTGATCCAAGAAACCAAGATTTCTGTATCATCAAGTATTAATTCAGAGCGCCAGCGAGCTAGTACTATGGATCATAAAATTCACGCGAGTAGTGTGGATGAAGAAGCTGCTCGTGGTTCTACAGAAGCAAGATCAGTTGATCACCATTCAAAACATTCAATCGGTGTCAATAATGAGAAGCAAGAAGATGACATTACAGAAAAGCGACTAACTGATAACTCCTCTAGAGATATAGACTTGA</gDNA_template>
            <first_frame> V  F  *  A  G  N  F  T  P  I  S  M  L  E  V  S  S  G  M  L  L  S  *  W  L  T  R  R  *  N  V  *  A  K  I  V  G  S  V  A  A  G  S  D  A  L  L  W  K  Y  P  G  D  R  *  R  *  S  M  M  I  L  R  M  K  M  D  V  E  T  L  R :   N  G  S  L  H  L  D  *  P  S  L  I  N  L  E  *  E  T  L  T  V  Q  Q  S  G  L  P  A  L  V  T  W  K  I  L  P  L  M  W  E  H  L  L  M  P  G  G  V  M  V  G  G  K  E  *  L  S  T  Q  T  N  Q  K  R  K  P  I  E  F  M  F  L  :  V  R  G  C  S  *  I  *  I  G  R  I  *  E  S  Q  G  I  G  W  E  I  D  G  *  I  S  R  Q  T  E  T  F  F  Q  *  Y  L  *  S  K  K  P  R  F  L  Y  H  Q  V  L  I  Q  S  A  S  E  L  V  L  W  I  I  K  F  T  R  V  V  W  M  K  K  L  L  V  V  L  Q  K  Q  D  Q  L  I  T  I  Q  N  I  Q  S  V  S  I  M  R  S  K  K  M  T  L  Q  K  S  D  *  L  I  T  P  L  E  I  *  T  * </first_frame>
            <second_frame>  F  F  K  Q  E  I  L  L  Q  *  A  C  W  K  *  A  L  V  C  S  *  V  S  G  *  R  E  D  R  M  S  E  P  R  *  W  D  P  W  L  L  V  Q  M  H  Y  C  G  N  I  P  E  T  D  E  D  K  V  *  *  Y  *  G  *  R  W  M  W  K  P  *   : G  M  D  P  Y  I  *  T  S  Q  A  *  *  T  W  N  E  K  L  *  P  S  N  N  Q  A  F  P  L  L  *  P  G  R  S  C  L  *  C  G  S  T  Y  *  C  L  V  E  *  W  L  V  G  R  N  N  C  R  R  R  Q  I  R  K  G  N  L  *  S  L  C  S  W :   *  E  D  V  L  E  Y  R  *  E  E  S  K  N  L  K  G  L  G  G  R  S  M  G  R  Y  R  D  K  Q  R  H  S  F  N  D  I  F  D  P  R  N  Q  D  F  C  I  I  K  Y  *  F  R  A  P  A  S  *  Y  Y  G  S  *  N  S  R  E  *  C  G  *  R  S  C  S  W  F  Y  R  S  K  I  S  *  S  P  F  K  T  F  N  R  C  Q  *  *  E  A  R  R  *  H  Y  R  K  A  T  N  *  *  L  L  *  R  Y  R  L   </second_frame>
            <third_frame>   F  L  S  R  K  F  Y  S  N  K  H  V  G  S  E  L  W  Y  A  P  K  L  V  V  N  E  K  I  E  C  L  S  Q  D  S  G  I  R  G  C  W  F  R  C  T  I  V  E  I  S  R  R  Q  M  K  I  K  Y  D  D  I  K  D  E  D  G  C  G  N  L  E  :  E  W  I  P  T  F  R  L  A  K  P  D  K  L  G  M  R  N  S  N  R  P  T  I  R  P  S  R  S  C  D  L  E  D  L  A  F  D  V  G  A  P  I  D  A  W  W  S  D  G  W  W  E  G  I  I  V  D  A  D  K  S  E  K  E  T  Y  R  V  Y  V  P   : G  E  R  M  F  L  N  I  D  R  K  N  L  R  I  S  R  D  W  V  G  D  R  W  V  D  I  E  T  N  R  D  I  L  S  M  I  S  L  I  Q  E  T  K  I  S  V  S  S  S  I  N  S  E  R  Q  R  A  S  T  M  D  H  K  I  H  A  S  S  V  D  E  E  A  A  R  G  S  T  E  A  R  S  V  D  H  H  S  K  H  S  I  G  V  N  N  E  K  Q  E  D  D  I  T  E  K  R  L  T  D  N  S  S  R  D  I  D  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97372" stop="97584"/>
                    <exon start="97749" stop="97965"/>
                    <exon start="98056" stop="98408"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLSRKFYSNKHVGSELWYAPKLVVNEKIECLSQDSGIRGCWFRCTIVEISRRQMKIKYDDIKDEDGCGNLEEWIPTFRLAKPDKLGMRNSNRPTIRPSRSCDLEDLAFDVGAPIDAWWSDGWWEGIIVDADKSEKETYRVYVPGERMFLNIDRKNLRISRDWVGDRWVDIETNRDILSMISLIQETKISVSSSINSERQRASTMDHKIHASSVDEEAARGSTEARSVDHHSKHSIGVNNEKQEDDITEKRLTDNSSRDIDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="98985" PGL_stop="98367"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98985" e_stop="98367"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="98985" e_stop="98367" e_length="619"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98985" stop="98367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324494" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCCTAAAGCGATATTGTGTCTCAATGATTTCACCATAAAATACTGCATTTACAACATGCAAGGTTCATAGTATGTATCTGTCTATTACACTGTGCGCAACACACTTGCAAAACAATTTGACTCGATAGAGGAACGTTACAGATATTGTAGAAGATCCTAGTAATTAGAGAGTTTATAATTTGCTAAAGCATCTCCAGATTCTAATGAAGTAGTGGGAACTAATGATAACCTGTACACCTAAGACACTCGATCCCTAACACTACGAGCAAACCTCATTCGATTTCCATCTCTATGTACAGTTGAACAGCATCAGTACCTGGCAACAAACTGGAATCTGTTTCGGTGGTAATACATCACGCCACTATATCCATTACTTCTGTCTCGCATTTCCCCCCATCAATCTCAGGTTCTGATGATTTTTCCACATTGCTGTCCTTGTCAATATCCGTGTTGTAAGAATCATTATCATCGCTAAGTTGGCAGTCTAAGTCATGCTTGTCGCTGCCACTGCTGCTGCTGTTATTACAATCATTCTCATCGGATTTGTTTTCAGTTGCGTGCTTCTCATCCTTAATCAAGTCTATATCTCTAGAGGAGTTATCAGTTAGTCGCTTTTC</gDNA_template>
            <first_frame> W  P  K  A  I  L  C  L  N  D  F  T  I  K  Y  C  I  Y  N  M  Q  G  S  *  Y  V  S  V  Y  Y  T  V  R  N  T  L  A  K  Q  F  D  S  I  E  E  R  Y  R  Y  C  R  R  S  *  *  L  E  S  L  *  F  A  K  A  S  P  D  S  N  E  V  V  G  T  N  D  N  L  Y  T  *  D  T  R  S  L  T  L  R  A  N  L  I  R  F  P  S  L  C  T  V  E  Q  H  Q  Y  L  A  T  N  W  N  L  F  R  W  *  Y  I  T  P  L  Y  P  L  L  L  S  R  I  S  P  H  Q  S  Q  V  L  M  I  F  P  H  C  C  P  C  Q  Y  P  C  C  K  N  H  Y  H  R  *  V  G  S  L  S  H  A  C  R  C  H  C  C  C  C  Y  Y  N  H  S  H  R  I  C  F  Q  L  R  A  S  H  P  *  S  S  L  Y  L  *  R  S  Y  Q  L  V  A  F  </first_frame>
            <second_frame>  G  L  K  R  Y  C  V  S  M  I  S  P  *  N  T  A  F  T  T  C  K  V  H  S  M  Y  L  S  I  T  L  C  A  T  H  L  Q  N  N  L  T  R  *  R  N  V  T  D  I  V  E  D  P  S  N  *  R  V  Y  N  L  L  K  H  L  Q  I  L  M  K  *  W  E  L  M  I  T  C  T  P  K  T  L  D  P  *  H  Y  E  Q  T  S  F  D  F  H  L  Y  V  Q  L  N  S  I  S  T  W  Q  Q  T  G  I  C  F  G  G  N  T  S  R  H  Y  I  H  Y  F  C  L  A  F  P  P  I  N  L  R  F  *  *  F  F  H  I  A  V  L  V  N  I  R  V  V  R  I  I  I  I  A  K  L  A  V  *  V  M  L  V  A  A  T  A  A  A  V  I  T  I  I  L  I  G  F  V  F  S  C  V  L  L  I  L  N  Q  V  Y  I  S  R  G  V  I  S  *  S  L  F </second_frame>
            <third_frame>   A  *  S  D  I  V  S  Q  *  F  H  H  K  I  L  H  L  Q  H  A  R  F  I  V  C  I  C  L  L  H  C  A  Q  H  T  C  K  T  I  *  L  D  R  G  T  L  Q  I  L  *  K  I  L  V  I  R  E  F  I  I  C  *  S  I  S  R  F  *  *  S  S  G  N  *  *  *  P  V  H  L  R  H  S  I  P  N  T  T  S  K  P  H  S  I  S  I  S  M  Y  S  *  T  A  S  V  P  G  N  K  L  E  S  V  S  V  V  I  H  H  A  T  I  S  I  T  S  V  S  H  F  P  P  S  I  S  G  S  D  D  F  S  T  L  L  S  L  S  I  S  V  L  *  E  S  L  S  S  L  S  W  Q  S  K  S  C  L  S  L  P  L  L  L  L  L  L  Q  S  F  S  S  D  L  F  S  V  A  C  F  S  S  L  I  K  S  I  S  L  E  E  L  S  V  S  R  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0033E17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="112434" PGL_stop="113978"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112434" e_stop="113978"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="112434" e_stop="113978" e_length="1545"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112434" stop="113978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315912" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTATGTACTCGAGTTTTATCGGATCATCATTCCCTCTAATACCACTTTATTCTCCTAACAATTCCTTCAAGTTTTCATCTTTAACAATGGCCGCTTGTATTCACGCTTCAAGAACCAAAAATCCACCAAAAAACCCACTTTCTCGTGACCCAAACAAGCCACAAATCGATAACCATGTCTACAATTACGTCAAATACTGCCGACCCACTTTCCCTGACCTTGTTTCCTGCAAACCCTTTTCAGAAAAAAGCTCGAAAATCGAGGAATTGGGAGATGAGTTATGGCTGAAAATGAAAGAGGAAGCTAGGTCAGATATTGACCAAGAACCAATTTTGTCTAGTTATTACGTTTCTTCAATTCTAGCTCATGAATCCATGGAGAGAGCTTTAGCTAATCATCTTTCTATGAAATTGGGTAATCCTAATCTTCCTAGTACTACTTTGTTTGATTTATTTATTGGGGTGTTAACAGAAGAAACAGATATAATTAAATCTGTTAAAGCTGATTTAAGAGCTGTTAAAGAAAGGGACCCTGCTTGTATTAGTTACGTACACTGTTTCTTGAATTTTAAAGGGTTTTTAGCTTGTCAAGCTCATAGAATTGCACATAAATTATGGTCTAAAGGGAGGCAAATTCTTGCTCTGTTAATACAAAACAGAGTATCTGAAGTTTTTGCTGTTGATATTCATCCTGGTGCTAAAATTGGTAAAGGGATTTTACTTGATCATGCTACTGGTGTTGTTGTTGGTGAAACTGCTGTAATTGGGAACAATGTTTCGATTTTGCATAATGTAACATTAGGTGGCACTGGTAAAGCATGTGGGGATAGACACCCTAAGATTGGTGATGGTGTTTTGATTGGTGCTGGAACTTGTGTTCTTGGAAATGTTAGAATTGGAGATGGGGCTAAGATTGGGGCAGGGTCTGTTGTGTTGAAGGAAGTTCCGGCGAGGACAACCGCTGTTGGGAATCCGGCGAGGTTGCTAGGAGGGAAGGAGAATCCAAAGAGACTTGATAAGATACCTAGTTTCACTATGGATCATACTTCACATATATCAGAGTGGTCTGATTATGTAATATAAAGTTGACAGCTTTGAGTTTTGTTTACTATTGTTTTAAATTTATATTTGATTAGTTAAAAGCTACGTTGCTCGGACTCTCTTAAAATGCTGTTAGGACACGGACCGAGCATTTTTGAAGAATTTAAGCAACGTAGGTGAAAAGGTCTTCGGGAATTTTAGTTTTAGGGAGAATCCAAGTTCTCTTAAATGCAGAGATGTTGTAACATATACCTTTAATGGTAACTGGTTTATAGATTTAAGAGATTACTGTACTAGTTTACTTGATATAGCAAATAGTTCAGTGTTGGATGAATTATCATCATGTTGCTATATGTCTCATAGGAGTTATTGCTTAAGTTCAAATGAGGACAAGTTTTGTGAGTTCAATTGAACCTATTGCTTTCGACTCGAACTATGTGTACATATTATAAAATAATTGAAATGTATACATGTAACTTATTGTTACTTGGCAGTTGGCATCT</gDNA_template>
            <first_frame> F  Y  V  L  E  F  Y  R  I  I  I  P  S  N  T  T  L  F  S  *  Q  F  L  Q  V  F  I  F  N  N  G  R  L  Y  S  R  F  K  N  Q  K  S  T  K  K  P  T  F  S  *  P  K  Q  A  T  N  R  *  P  C  L  Q  L  R  Q  I  L  P  T  H  F  P  *  P  C  F  L  Q  T  L  F  R  K  K  L  E  N  R  G  I  G  R  *  V  M  A  E  N  E  R  G  S  *  V  R  Y  *  P  R  T  N  F  V  *  L  L  R  F  F  N  S  S  S  *  I  H  G  E  S  F  S  *  S  S  F  Y  E  I  G  *  S  *  S  S  *  Y  Y  F  V  *  F  I  Y  W  G  V  N  R  R  N  R  Y  N  *  I  C  *  S  *  F  K  S  C  *  R  K  G  P  C  L  Y  *  L  R  T  L  F  L  E  F  *  R  V  F  S  L  S  S  S  *  N  C  T  *  I  M  V  *  R  E  A  N  S  C  S  V  N  T  K  Q  S  I  *  S  F  C  C  *  Y  S  S  W  C  *  N  W  *  R  D  F  T  *  S  C  Y  W  C  C  C  W  *  N  C  C  N  W  E  Q  C  F  D  F  A  *  C  N  I  R  W  H  W  *  S  M  W  G  *  T  P  *  D  W  *  W  C  F  D  W  C  W  N  L  C  S  W  K  C  *  N  W  R  W  G  *  D  W  G  R  V  C  C  V  E  G  S  S  G  E  D  N  R  C  W  E  S  G  E  V  A  R  R  E  G  E  S  K  E  T  *  *  D  T  *  F  H  Y  G  S  Y  F  T  Y  I  R  V  V  *  L  C  N  I  K  L  T  A  L  S  F  V  Y  Y  C  F  K  F  I  F  D  *  L  K  A  T  L  L  G  L  S  *  N  A  V  R  T  R  T  E  H  F  *  R  I  *  A  T  *  V  K  R  S  S  G  I  L  V  L  G  R  I  Q  V  L  L  N  A  E  M  L  *  H  I  P  L  M  V  T  G  L  *  I  *  E  I  T  V  L  V  Y  L  I  *  Q  I  V  Q  C  W  M  N  Y  H  H  V  A  I  C  L  I  G  V  I  A  *  V  Q  M  R  T  S  F  V  S  S  I  E  P  I  A  F  D  S  N  Y  V  Y  I  L  *  N  N  *  N  V  Y  M  *  L  I  V  T  W  Q  L  A  S </first_frame>
            <second_frame>  S  M  Y  S  S  F  I  G  S  S  F  P  L  I  P  L  Y  S  P  N  N  S  F  K  F  S  S  L  T  M  A  A  C  I  H  A  S  R  T  K  N  P  P  K  N  P  L  S  R  D  P  N  K  P  Q  I  D  N  H  V  Y  N  Y  V  K  Y  C  R  P  T  F  P  D  L  V  S  C  K  P  F  S  E  K  S  S  K  I  E  E  L  G  D  E  L  W  L  K  M  K  E  E  A  R  S  D  I  D  Q  E  P  I  L  S  S  Y  Y  V  S  S  I  L  A  H  E  S  M  E  R  A  L  A  N  H  L  S  M  K  L  G  N  P  N  L  P  S  T  T  L  F  D  L  F  I  G  V  L  T  E  E  T  D  I  I  K  S  V  K  A  D  L  R  A  V  K  E  R  D  P  A  C  I  S  Y  V  H  C  F  L  N  F  K  G  F  L  A  C  Q  A  H  R  I  A  H  K  L  W  S  K  G  R  Q  I  L  A  L  L  I  Q  N  R  V  S  E  V  F  A  V  D  I  H  P  G  A  K  I  G  K  G  I  L  L  D  H  A  T  G  V  V  V  G  E  T  A  V  I  G  N  N  V  S  I  L  H  N  V  T  L  G  G  T  G  K  A  C  G  D  R  H  P  K  I  G  D  G  V  L  I  G  A  G  T  C  V  L  G  N  V  R  I  G  D  G  A  K  I  G  A  G  S  V  V  L  K  E  V  P  A  R  T  T  A  V  G  N  P  A  R  L  L  G  G  K  E  N  P  K  R  L  D  K  I  P  S  F  T  M  D  H  T  S  H  I  S  E  W  S  D  Y  V  I  *  S  *  Q  L  *  V  L  F  T  I  V  L  N  L  Y  L  I  S  *  K  L  R  C  S  D  S  L  K  M  L  L  G  H  G  P  S  I  F  E  E  F  K  Q  R  R  *  K  G  L  R  E  F  *  F  *  G  E  S  K  F  S  *  M  Q  R  C  C  N  I  Y  L  *  W  *  L  V  Y  R  F  K  R  L  L  Y  *  F  T  *  Y  S  K  *  F  S  V  G  *  I  I  I  M  L  L  Y  V  S  *  E  L  L  L  K  F  K  *  G  Q  V  L  *  V  Q  L  N  L  L  L  S  T  R  T  M  C  T  Y  Y  K  I  I  E  M  Y  T  C  N  L  L  L  L  G  S  W  H   </second_frame>
            <third_frame>   L  C  T  R  V  L  S  D  H  H  S  L  *  Y  H  F  I  L  L  T  I  P  S  S  F  H  L  *  Q  W  P  L  V  F  T  L  Q  E  P  K  I  H  Q  K  T  H  F  L  V  T  Q  T  S  H  K  S  I  T  M  S  T  I  T  S  N  T  A  D  P  L  S  L  T  L  F  P  A  N  P  F  Q  K  K  A  R  K  S  R  N  W  E  M  S  Y  G  *  K  *  K  R  K  L  G  Q  I  L  T  K  N  Q  F  C  L  V  I  T  F  L  Q  F  *  L  M  N  P  W  R  E  L  *  L  I  I  F  L  *  N  W  V  I  L  I  F  L  V  L  L  C  L  I  Y  L  L  G  C  *  Q  K  K  Q  I  *  L  N  L  L  K  L  I  *  E  L  L  K  K  G  T  L  L  V  L  V  T  Y  T  V  S  *  I  L  K  G  F  *  L  V  K  L  I  E  L  H  I  N  Y  G  L  K  G  G  K  F  L  L  C  *  Y  K  T  E  Y  L  K  F  L  L  L  I  F  I  L  V  L  K  L  V  K  G  F  Y  L  I  M  L  L  V  L  L  L  V  K  L  L  *  L  G  T  M  F  R  F  C  I  M  *  H  *  V  A  L  V  K  H  V  G  I  D  T  L  R  L  V  M  V  F  *  L  V  L  E  L  V  F  L  E  M  L  E  L  E  M  G  L  R  L  G  Q  G  L  L  C  *  R  K  F  R  R  G  Q  P  L  L  G  I  R  R  G  C  *  E  G  R  R  I  Q  R  D  L  I  R  Y  L  V  S  L  W  I  I  L  H  I  Y  Q  S  G  L  I  M  *  Y  K  V  D  S  F  E  F  C  L  L  L  F  *  I  Y  I  *  L  V  K  S  Y  V  A  R  T  L  L  K  C  C  *  D  T  D  R  A  F  L  K  N  L  S  N  V  G  E  K  V  F  G  N  F  S  F  R  E  N  P  S  S  L  K  C  R  D  V  V  T  Y  T  F  N  G  N  W  F  I  D  L  R  D  Y  C  T  S  L  L  D  I  A  N  S  S  V  L  D  E  L  S  S  C  C  Y  M  S  H  R  S  Y  C  L  S  S  N  E  D  K  F  C  E  F  N  *  T  Y  C  F  R  L  E  L  C  V  H  I  I  K  *  L  K  C  I  H  V  T  Y  C  Y  L  A  V  G  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112435" stop="113517"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1080</number_coding_nucleotides>
                  <number_encoded_amino_acids>360</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMYSSFIGSSFPLIPLYSPNNSFKFSSLTMAACIHASRTKNPPKNPLSRDPNKPQIDNHVYNYVKYCRPTFPDLVSCKPFSEKSSKIEELGDELWLKMKEEARSDIDQEPILSSYYVSSILAHESMERALANHLSMKLGNPNLPSTTLFDLFIGVLTEETDIIKSVKADLRAVKERDPACISYVHCFLNFKGFLACQAHRIAHKLWSKGRQILALLIQNRVSEVFAVDIHPGAKIGKGILLDHATGVVVGETAVIGNNVSILHNVTLGGTGKACGDRHPKIGDGVLIGAGTCVLGNVRIGDGAKIGAGSVVLKEVPARTTAVGNPARLLGGKENPKRLDKIPSFTMDHTSHISEWSDYVI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113612" stop="113887"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTDRAFLKNLSNVGEKVFGNFSFRENPSSLKCRDVVTYTFNGNWFIDLRDYCTSLLDIANSSVLDELSSCCYMSHRSYCLSSNEDKFCEFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="114979" PGL_stop="116137"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114979" e_stop="115474"/>
            <exon e_start="115734" e_stop="116137"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114979" e_stop="115474" e_length="496"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="115475" i_stop="115733" i_length="259"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="115734" e_stop="116137" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114979" stop="115474"/>
              <exon start="115734" stop="116137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTTAGGAGAGTGACATTTAACCATACTGATAATTATTGGACATCTTTTCTTAATGATTTAGTGAATTGAACTCCAAGTTTTTGGTTATTACTTCACACTAATGCAATCAAGAACTAATTTGTGCATTTATATATATGGAATATTTAATAAAGATGTAAACAACTTAACATTGACAATAACAATGATAATGAAGATTAGTTTCTTCTTAGCATTTTCATTTTACATTTGTCTATGCAGGGGAAAAGATAGTGATAATCTCTATGATGTTTGTCCTACCGATGCAACGCGTAAGAACGTCTTCATAAACGGCTATCCATGCAAGAATCCAGCACAAATTACTGCTTCTGATTTCAAAAGCTCTGGTTTGAGCAAGGAAGGTGACACGGATAACTTTCAACGTTCATCGACAACATTAGTCACTGCTGCAGAATTTGCAGGACTCAACACTCTCGGGTTATCTGTTGCCAGGACTGACCTGGATGTAGATGGCGTG : ATAATGCCACATGCTCATCCACGAGCTTCCGAGATGATGTTTGTTGGCAAAGGAGTGGTGATTGCTGGATTTATCGACACGAAAAGCCAAGTGTTCCAAAAGACTCTTAAACAAGGTGATGTGTTTATTGTCCCCAGAGGACTTCTACATTATAACTTGAATTCGGGGTTCGAATTAGCCACTGTGTACTCAGTGCTGAGCAGCCAGAATCCTGGTATGTTGAGTATATCAGATGCAATGTTTGCACCAGTTGTTTCGGAACCCATGAGAGACCTGATGAAGAAGTTGTTTTCGCGTTCAAACTTGGGAACAAACCAGATTAAAAATGTAACATCGTTTCGTTATTAAACTTCATTCATAACTTTGAGCATTTCCGTTTCTAATATAACTCGTGCCAAATATTT</gDNA_template>
            <first_frame> L  F  R  R  V  T  F  N  H  T  D  N  Y  W  T  S  F  L  N  D  L  V  N  *  T  P  S  F  W  L  L  L  H  T  N  A  I  K  N  *  F  V  H  L  Y  I  W  N  I  *  *  R  C  K  Q  L  N  I  D  N  N  N  D  N  E  D  *  F  L  L  S  I  F  I  L  H  L  S  M  Q  G  K  R  *  *  *  S  L  *  C  L  S  Y  R  C  N  A  *  E  R  L  H  K  R  L  S  M  Q  E  S  S  T  N  Y  C  F  *  F  Q  K  L  W  F  E  Q  G  R  *  H  G  *  L  S  T  F  I  D  N  I  S  H  C  C  R  I  C  R  T  Q  H  S  R  V  I  C  C  Q  D  *  P  G  C  R  W  R   : D  N  A  T  C  S  S  T  S  F  R  D  D  V  C  W  Q  R  S  G  D  C  W  I  Y  R  H  E  K  P  S  V  P  K  D  S  *  T  R  *  C  V  Y  C  P  Q  R  T  S  T  L  *  L  E  F  G  V  R  I  S  H  C  V  L  S  A  E  Q  P  E  S  W  Y  V  E  Y  I  R  C  N  V  C  T  S  C  F  G  T  H  E  R  P  D  E  E  V  V  F  A  F  K  L  G  N  K  P  D  *  K  C  N  I  V  S  L  L  N  F  I  H  N  F  E  H  F  R  F  *  Y  N  S  C  Q  I  F </first_frame>
            <second_frame>  Y  L  G  E  *  H  L  T  I  L  I  I  I  G  H  L  F  L  M  I  *  *  I  E  L  Q  V  F  G  Y  Y  F  T  L  M  Q  S  R  T  N  L  C  I  Y  I  Y  G  I  F  N  K  D  V  N  N  L  T  L  T  I  T  M  I  M  K  I  S  F  F  L  A  F  S  F  Y  I  C  L  C  R  G  K  D  S  D  N  L  Y  D  V  C  P  T  D  A  T  R  K  N  V  F  I  N  G  Y  P  C  K  N  P  A  Q  I  T  A  S  D  F  K  S  S  G  L  S  K  E  G  D  T  D  N  F  Q  R  S  S  T  T  L  V  T  A  A  E  F  A  G  L  N  T  L  G  L  S  V  A  R  T  D  L  D  V  D  G  V  :  I  M  P  H  A  H  P  R  A  S  E  M  M  F  V  G  K  G  V  V  I  A  G  F  I  D  T  K  S  Q  V  F  Q  K  T  L  K  Q  G  D  V  F  I  V  P  R  G  L  L  H  Y  N  L  N  S  G  F  E  L  A  T  V  Y  S  V  L  S  S  Q  N  P  G  M  L  S  I  S  D  A  M  F  A  P  V  V  S  E  P  M  R  D  L  M  K  K  L  F  S  R  S  N  L  G  T  N  Q  I  K  N  V  T  S  F  R  Y  *  T  S  F  I  T  L  S  I  S  V  S  N  I  T  R  A  K  Y   </second_frame>
            <third_frame>   I  *  E  S  D  I  *  P  Y  *  *  L  L  D  I  F  S  *  *  F  S  E  L  N  S  K  F  L  V  I  T  S  H  *  C  N  Q  E  L  I  C  A  F  I  Y  M  E  Y  L  I  K  M  *  T  T  *  H  *  Q  *  Q  *  *  *  R  L  V  S  S  *  H  F  H  F  T  F  V  Y  A  G  E  K  I  V  I  I  S  M  M  F  V  L  P  M  Q  R  V  R  T  S  S  *  T  A  I  H  A  R  I  Q  H  K  L  L  L  L  I  S  K  A  L  V  *  A  R  K  V  T  R  I  T  F  N  V  H  R  Q  H  *  S  L  L  Q  N  L  Q  D  S  T  L  S  G  Y  L  L  P  G  L  T  W  M  *  M  A  * :   *  C  H  M  L  I  H  E  L  P  R  *  C  L  L  A  K  E  W  *  L  L  D  L  S  T  R  K  A  K  C  S  K  R  L  L  N  K  V  M  C  L  L  S  P  E  D  F  Y  I  I  T  *  I  R  G  S  N  *  P  L  C  T  Q  C  *  A  A  R  I  L  V  C  *  V  Y  Q  M  Q  C  L  H  Q  L  F  R  N  P  *  E  T  *  *  R  S  C  F  R  V  Q  T  W  E  Q  T  R  L  K  M  *  H  R  F  V  I  K  L  H  S  *  L  *  A  F  P  F  L  I  *  L  V  P  N  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115046" stop="115474"/>
                    <exon start="115734" stop="116081"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IELQVFGYYFTLMQSRTNLCIYIYGIFNKDVNNLTLTITMIMKISFFLAFSFYICLCRGKDSDNLYDVCPTDATRKNVFINGYPCKNPAQITASDFKSSGLSKEGDTDNFQRSSTTLVTAAEFAGLNTLGLSVARTDLDVDGVIMPHAHPRASEMMFVGKGVVIAGFIDTKSQVFQKTLKQGDVFIVPRGLLHYNLNSGFELATVYSVLSSQNPGMLSISDAMFAPVVSEPMRDLMKKLFSRSNLGTNQIKNVTSFRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="124920" PGL_stop="125621"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124920" e_stop="125000"/>
            <exon e_start="125101" e_stop="125395"/>
            <exon e_start="125499" e_stop="125621"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.847" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="124920" e_stop="125000" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.847" acc_prob="0.999">
            <gDNA_intron_boundary i_start="125001" i_stop="125100" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="125101" e_stop="125395" e_length="295"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="125396" i_stop="125498" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="125499" e_stop="125621" e_length="123"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124920" stop="125000"/>
              <exon start="125101" stop="125395"/>
              <exon start="125499" stop="125621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346735" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCATTGCAGTAATGTCACAAGTCGCATGGCAGATCTTCATAGTCTTTATCCCAGTCATTGCAATTTGCATTTGGTTGGAG : CAATATTACATCCCTGCAGCACGAGAACTGGCACGTCTAAATGGGACATGCAAAGCTCCAGTAATACAGCATTTTGCTGAAACAATTTCAGGATCAAGCACAATTCGAAGTTTCGATCAAGAATCTAGATTCCAGGATGCAAGCATGAGATTAATAGACAATTATTCTCGGCCTAAGTTTCACACAGCTGCTGCGATGGAGTGGCTTTGCATGCGTTTGGATATGTTATCTCTGATTACTTTTGCTTTCGCGTTGATTTTCTTGATCTCTCTTCCTGTTGGAACAATCGATCCAA : GTGTTGCTGGCTTAGCTGTTACATATGGACTTAATCTAAACGTACTGCAAGCTTGGGTTGTATGGAATCTTTGTATGATGGAAAATAAAATTATTTCCGTCGAAAGAATACTTCAGTATGCTG</gDNA_template>
            <first_frame> I  I  A  V  M  S  Q  V  A  W  Q  I  F  I  V  F  I  P  V  I  A  I  C  I  W  L  E  :  Q  Y  Y  I  P  A  A  R  E  L  A  R  L  N  G  T  C  K  A  P  V  I  Q  H  F  A  E  T  I  S  G  S  S  T  I  R  S  F  D  Q  E  S  R  F  Q  D  A  S  M  R  L  I  D  N  Y  S  R  P  K  F  H  T  A  A  A  M  E  W  L  C  M  R  L  D  M  L  S  L  I  T  F  A  F  A  L  I  F  L  I  S  L  P  V  G  T  I  D  P   : S  V  A  G  L  A  V  T  Y  G  L  N  L  N  V  L  Q  A  W  V  V  W  N  L  C  M  M  E  N  K  I  I  S  V  E  R  I  L  Q  Y  A  </first_frame>
            <second_frame>  S  L  Q  *  C  H  K  S  H  G  R  S  S  *  S  L  S  Q  S  L  Q  F  A  F  G  W  S :   N  I  T  S  L  Q  H  E  N  W  H  V  *  M  G  H  A  K  L  Q  *  Y  S  I  L  L  K  Q  F  Q  D  Q  A  Q  F  E  V  S  I  K  N  L  D  S  R  M  Q  A  *  D  *  *  T  I  I  L  G  L  S  F  T  Q  L  L  R  W  S  G  F  A  C  V  W  I  C  Y  L  *  L  L  L  L  S  R  *  F  S  *  S  L  F  L  L  E  Q  S  I  Q  :  V  L  L  A  *  L  L  H  M  D  L  I  *  T  Y  C  K  L  G  L  Y  G  I  F  V  *  W  K  I  K  L  F  P  S  K  E  Y  F  S  M  L </second_frame>
            <third_frame>   H  C  S  N  V  T  S  R  M  A  D  L  H  S  L  Y  P  S  H  C  N  L  H  L  V  G   : A  I  L  H  P  C  S  T  R  T  G  T  S  K  W  D  M  Q  S  S  S  N  T  A  F  C  *  N  N  F  R  I  K  H  N  S  K  F  R  S  R  I  *  I  P  G  C  K  H  E  I  N  R  Q  L  F  S  A  *  V  S  H  S  C  C  D  G  V  A  L  H  A  F  G  Y  V  I  S  D  Y  F  C  F  R  V  D  F  L  D  L  S  S  C  W  N  N  R  S  K :   C  C  W  L  S  C  Y  I  W  T  *  S  K  R  T  A  S  L  G  C  M  E  S  L  Y  D  G  K  *  N  Y  F  R  R  K  N  T  S  V  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124920" stop="125000"/>
                    <exon start="125101" stop="125395"/>
                    <exon start="125499" stop="125620"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIAVMSQVAWQIFIVFIPVIAICIWLEQYYIPAARELARLNGTCKAPVIQHFAETISGSSTIRSFDQESRFQDASMRLIDNYSRPKFHTAAAMEWLCMRLDMLSLITFAFALIFLISLPVGTIDPSVAGLAVTYGLNLNVLQAWVVWNLCMMENKIISVERILQYA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="125678" PGL_stop="127224"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125678" e_stop="125713"/>
            <exon e_start="125803" e_stop="126108"/>
            <exon e_start="126205" e_stop="126268"/>
            <exon e_start="126351" e_stop="126590"/>
            <exon e_start="126673" e_stop="127224"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.582" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125678" e_stop="125713" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="125714" i_stop="125802" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="125803" e_stop="126108" e_length="306"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="126109" i_stop="126204" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="126205" e_stop="126268" e_length="64"/>
          </exon>
          <intron i_serial="3" don_prob="0.948" acc_prob="0.998">
            <gDNA_intron_boundary i_start="126269" i_stop="126350" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="126351" e_stop="126590" e_length="240"/>
          </exon>
          <intron i_serial="4" don_prob="0.582" acc_prob="0.998">
            <gDNA_intron_boundary i_start="126591" i_stop="126672" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="126673" e_stop="127224" e_length="552"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125678" stop="125713"/>
              <exon start="125803" stop="126108"/>
              <exon start="126205" stop="126268"/>
              <exon start="126351" stop="126590"/>
              <exon start="126673" stop="127224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCATCTCGTGGAGAGGTTGAGTTCAACAATCTTCAG : GTCCGATATGCTCCACACATGCCTCTCGTGTTACGAGGACTTACATGCACTTTCTTTGGTGGGAAGAAGACTGGAATTGTTGGTAGGACAGGCAGTGGTAAATCAACTTTAATACAGACCCTTTTCCGCATAGTTGATCCTGTTGTTGGACAAATAAAGATAGATGGTACCAACATCTCCACAATTGGTCTGCATGATCTGCGGTCTAGATTGAGTATCATTCCGCAGGATCCGACTATGTTTGAGGGAACTGTACGCAGCAACCTAGATCCGCTCGAAGAGCATTCAGATGATCAAATTTGGGAG : GCGCTGGACAAATGTCAACTAGGAGACGAAGTTAGGAAGAAGGAAGGCAAGCTATATTCTACAG : TATCTGAGAATGGAGAGAACTGGAGCGTAGGCCAAAGGCAGCTGGTCTGTCTTGGCCGCGTGCTACTCAAAAAAAGCAAGGTCCTTGTCCTAGACGAGGCTACAGCATCTGTTGACACTGCAACTGACAATCTAATTCAGCAAACTCTGAGGCTGCACTTCACTGATTCCACTGTTATAACCATCGCTCATAGGATAACATCTGTTCTTGATAGTGACATGGTCCTACTATTAGAACACG : GGCTGATTGCTGAATATGACACTCCAGGCAAGTTATTAGAGAACGAATCCTCGTTGTTTGCCAAGCTCGTGGCTGAGTATAGTATGAGATCAAATTCAAGTTTTGAGAATGCCTCAGACACATGAATCTTTCATTGACCACGTTATACGATGATGATGATGAAAACTAGTACACATGAATCTCAGACACTAACACTCTTTTGAGTTTCCATCCGTGGACGATAGAGCTTGAACAAGAACCCGCGAAATGCAGCTCATTGCATGTGACTTGAGGGAAACTGCAACAATCTTATGGCAGTGAAAGAAGTTCATCTATTTGTGCAATATTGATAGTGAAATGGCATCTGTTTTCTTTAGACTTTTTGATGTGAAAAAATGTTTTAAGTATTTGTTTACCAATAATTTGAATGTATGTTGAGTCAATTGATTAGTTAGTTAAGAGTGCACGGATTTTGTTCCTTATTGTAAAAGTAGTAAAACTTTTTGTATTGAGTTGGAAGTGAACTTACAAGTGTTTGAATTTTTCTCTACAAGCAAAACTGAAATACTTTTA</gDNA_template>
            <first_frame> P  S  R  G  E  V  E  F  N  N  L  Q  :  V  R  Y  A  P  H  M  P  L  V  L  R  G  L  T  C  T  F  F  G  G  K  K  T  G  I  V  G  R  T  G  S  G  K  S  T  L  I  Q  T  L  F  R  I  V  D  P  V  V  G  Q  I  K  I  D  G  T  N  I  S  T  I  G  L  H  D  L  R  S  R  L  S  I  I  P  Q  D  P  T  M  F  E  G  T  V  R  S  N  L  D  P  L  E  E  H  S  D  D  Q  I  W  E  :  A  L  D  K  C  Q  L  G  D  E  V  R  K  K  E  G  K  L  Y  S  T   : V  S  E  N  G  E  N  W  S  V  G  Q  R  Q  L  V  C  L  G  R  V  L  L  K  K  S  K  V  L  V  L  D  E  A  T  A  S  V  D  T  A  T  D  N  L  I  Q  Q  T  L  R  L  H  F  T  D  S  T  V  I  T  I  A  H  R  I  T  S  V  L  D  S  D  M  V  L  L  L  E  H   : G  L  I  A  E  Y  D  T  P  G  K  L  L  E  N  E  S  S  L  F  A  K  L  V  A  E  Y  S  M  R  S  N  S  S  F  E  N  A  S  D  T  *  I  F  H  *  P  R  Y  T  M  M  M  M  K  T  S  T  H  E  S  Q  T  L  T  L  F  *  V  S  I  R  G  R  *  S  L  N  K  N  P  R  N  A  A  H  C  M  *  L  E  G  N  C  N  N  L  M  A  V  K  E  V  H  L  F  V  Q  Y  *  *  *  N  G  I  C  F  L  *  T  F  *  C  E  K  M  F  *  V  F  V  Y  Q  *  F  E  C  M  L  S  Q  L  I  S  *  L  R  V  H  G  F  C  S  L  L  *  K  *  *  N  F  L  Y  *  V  G  S  E  L  T  S  V  *  I  F  L  Y  K  Q  N  *  N  T  F  </first_frame>
            <second_frame>  H  L  V  E  R  L  S  S  T  I  F  R :   S  D  M  L  H  T  C  L  S  C  Y  E  D  L  H  A  L  S  L  V  G  R  R  L  E  L  L  V  G  Q  A  V  V  N  Q  L  *  Y  R  P  F  S  A  *  L  I  L  L  L  D  K  *  R  *  M  V  P  T  S  P  Q  L  V  C  M  I  C  G  L  D  *  V  S  F  R  R  I  R  L  C  L  R  E  L  Y  A  A  T  *  I  R  S  K  S  I  Q  M  I  K  F  G  R :   R  W  T  N  V  N  *  E  T  K  L  G  R  R  K  A  S  Y  I  L  Q  :  Y  L  R  M  E  R  T  G  A  *  A  K  G  S  W  S  V  L  A  A  C  Y  S  K  K  A  R  S  L  S  *  T  R  L  Q  H  L  L  T  L  Q  L  T  I  *  F  S  K  L  *  G  C  T  S  L  I  P  L  L  *  P  S  L  I  G  *  H  L  F  L  I  V  T  W  S  Y  Y  *  N  T  :  G  *  L  L  N  M  T  L  Q  A  S  Y  *  R  T  N  P  R  C  L  P  S  S  W  L  S  I  V  *  D  Q  I  Q  V  L  R  M  P  Q  T  H  E  S  F  I  D  H  V  I  R  *  *  *  *  K  L  V  H  M  N  L  R  H  *  H  S  F  E  F  P  S  V  D  D  R  A  *  T  R  T  R  E  M  Q  L  I  A  C  D  L  R  E  T  A  T  I  L  W  Q  *  K  K  F  I  Y  L  C  N  I  D  S  E  M  A  S  V  F  F  R  L  F  D  V  K  K  C  F  K  Y  L  F  T  N  N  L  N  V  C  *  V  N  *  L  V  S  *  E  C  T  D  F  V  P  Y  C  K  S  S  K  T  F  C  I  E  L  E  V  N  L  Q  V  F  E  F  F  S  T  S  K  T  E  I  L  L </second_frame>
            <third_frame>   I  S  W  R  G  *  V  Q  Q  S  S   : G  P  I  C  S  T  H  A  S  R  V  T  R  T  Y  M  H  F  L  W  W  E  E  D  W  N  C  W  *  D  R  Q  W  *  I  N  F  N  T  D  P  F  P  H  S  *  S  C  C  W  T  N  K  D  R  W  Y  Q  H  L  H  N  W  S  A  *  S  A  V  *  I  E  Y  H  S  A  G  S  D  Y  V  *  G  N  C  T  Q  Q  P  R  S  A  R  R  A  F  R  *  S  N  L  G   : G  A  G  Q  M  S  T  R  R  R  S  *  E  E  G  R  Q  A  I  F  Y  S :   I  *  E  W  R  E  L  E  R  R  P  K  A  A  G  L  S  W  P  R  A  T  Q  K  K  Q  G  P  C  P  R  R  G  Y  S  I  C  *  H  C  N  *  Q  S  N  S  A  N  S  E  A  A  L  H  *  F  H  C  Y  N  H  R  S  *  D  N  I  C  S  *  *  *  H  G  P  T  I  R  T  R :   A  D  C  *  I  *  H  S  R  Q  V  I  R  E  R  I  L  V  V  C  Q  A  R  G  *  V  *  Y  E  I  K  F  K  F  *  E  C  L  R  H  M  N  L  S  L  T  T  L  Y  D  D  D  D  E  N  *  Y  T  *  I  S  D  T  N  T  L  L  S  F  H  P  W  T  I  E  L  E  Q  E  P  A  K  C  S  S  L  H  V  T  *  G  K  L  Q  Q  S  Y  G  S  E  R  S  S  S  I  C  A  I  L  I  V  K  W  H  L  F  S  L  D  F  L  M  *  K  N  V  L  S  I  C  L  P  I  I  *  M  Y  V  E  S  I  D  *  L  V  K  S  A  R  I  L  F  L  I  V  K  V  V  K  L  F  V  L  S  W  K  *  T  Y  K  C  L  N  F  S  L  Q  A  K  L  K  Y  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125678" stop="125713"/>
                    <exon start="125803" stop="126108"/>
                    <exon start="126205" stop="126268"/>
                    <exon start="126351" stop="126590"/>
                    <exon start="126673" stop="126797"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSRGEVEFNNLQVRYAPHMPLVLRGLTCTFFGGKKTGIVGRTGSGKSTLIQTLFRIVDPVVGQIKIDGTNISTIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEHSDDQIWEALDKCQLGDEVRKKEGKLYSTVSENGENWSVGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRLHFTDSTVITIAHRITSVLDSDMVLLLEHGLIAEYDTPGKLLENESSLFAKLVAEYSMRSNSSFENASDT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="130660" PGL_stop="135079"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130660" e_stop="130694"/>
            <exon e_start="131786" e_stop="131867"/>
            <exon e_start="133614" e_stop="133753"/>
            <exon e_start="133841" e_stop="133919"/>
            <exon e_start="134028" e_stop="134091"/>
            <exon e_start="134561" e_stop="134652"/>
            <exon e_start="134787" e_stop="134852"/>
            <exon e_start="135001" e_stop="135079"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.575" acc_prob="0.656" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="0.978"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="0.985"/>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="130660" e_stop="130694" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.986">
            <gDNA_intron_boundary i_start="130695" i_stop="131785" i_length="1091"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="131786" e_stop="131867" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="131868" i_stop="133613" i_length="1746"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="133614" e_stop="133753" e_length="140"/>
          </exon>
          <intron i_serial="3" don_prob="0.575" acc_prob="0.656">
            <gDNA_intron_boundary i_start="133754" i_stop="133840" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="133841" e_stop="133919" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.996">
            <gDNA_intron_boundary i_start="133920" i_stop="134027" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="134028" e_stop="134091" e_length="64"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="134092" i_stop="134560" i_length="469"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="134561" e_stop="134652" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="134653" i_stop="134786" i_length="134"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="134787" e_stop="134852" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="134853" i_stop="135000" i_length="148"/>
          </intron>
          <exon e_serial="8" e_score="0.937">
            <gDNA_exon_boundary e_start="135001" e_stop="135079" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130660" stop="130694"/>
              <exon start="131786" stop="131867"/>
              <exon start="133614" stop="133753"/>
              <exon start="133841" stop="133919"/>
              <exon start="134028" stop="134091"/>
              <exon start="134561" stop="134652"/>
              <exon start="134787" stop="134852"/>
              <exon start="135001" stop="135079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331538" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAATGCTAAAACTCCTCGGCTTGAAAGGAAGAAG : TGAACCATATGTCACTGAGGATGAATTGAAGTTGATGCTGCGTGGGGCGGAGTTAAGTGGCGCAATTGAGGAGGAAGAGCAG : GATATGATTGAAAATGTGTTGGAGATTAAAGACACTCATGTCAGGGAGGTAATGACACCTCTTGTTGATGTTGTTGCAATCGATGCCAGTGCAACGTTAGTTGATTTCCATAGTTTGTGGGTGACACATCAGTACTCCAG : GGTGCCCGTTTTTGAGCAACGTATAGATAATATTGTTGGCATTGCATATGCCATGGATCTCCTAGATTATGTACAAAAG : GGAGAACTGCTGGAAAGTTCTATTGTGGGAGACATTGCACATAAACCTGCATACTTTGTTCCCG : ATTCTATGTCAGTGTGGAACCTTCTTAGAGAGTTCCGCATCAGAAAGGTACACATGGCTGTTGTTCTTAATGAATATGGAGGAACCATTGGA : ATTGTAACCCTTGAAGATGTGGTCGAGGAAATTGTTGGCGAAATCTTTGACGAAAATGATTCAAAA : GAGGAAATCCAGAAAAAAACTGGCTATATTGTCATGCGGGCTGAGGGAATATACGATGTTGATGCAAATACCTCCATTG</gDNA_template>
            <first_frame> G  M  L  K  L  L  G  L  K  G  R  S :   E  P  Y  V  T  E  D  E  L  K  L  M  L  R  G  A  E  L  S  G  A  I  E  E  E  E  Q  :  D  M  I  E  N  V  L  E  I  K  D  T  H  V  R  E  V  M  T  P  L  V  D  V  V  A  I  D  A  S  A  T  L  V  D  F  H  S  L  W  V  T  H  Q  Y  S  R :   V  P  V  F  E  Q  R  I  D  N  I  V  G  I  A  Y  A  M  D  L  L  D  Y  V  Q  K  :  G  E  L  L  E  S  S  I  V  G  D  I  A  H  K  P  A  Y  F  V  P   : D  S  M  S  V  W  N  L  L  R  E  F  R  I  R  K  V  H  M  A  V  V  L  N  E  Y  G  G  T  I  G  :  I  V  T  L  E  D  V  V  E  E  I  V  G  E  I  F  D  E  N  D  S  K  :  E  E  I  Q  K  K  T  G  Y  I  V  M  R  A  E  G  I  Y  D  V  D  A  N  T  S  I  </first_frame>
            <second_frame>  E  C  *  N  S  S  A  *  K  E  E   : V  N  H  M  S  L  R  M  N  *  S  *  C  C  V  G  R  S  *  V  A  Q  L  R  R  K  S  R :   I  *  L  K  M  C  W  R  L  K  T  L  M  S  G  R  *  *  H  L  L  L  M  L  L  Q  S  M  P  V  Q  R  *  L  I  S  I  V  C  G  *  H  I  S  T  P   : G  C  P  F  L  S  N  V  *  I  I  L  L  A  L  H  M  P  W  I  S  *  I  M  Y  K  R :   E  N  C  W  K  V  L  L  W  E  T  L  H  I  N  L  H  T  L  F  P  :  I  L  C  Q  C  G  T  F  L  E  S  S  A  S  E  R  Y  T  W  L  L  F  L  M  N  M  E  E  P  L  E :   L  *  P  L  K  M  W  S  R  K  L  L  A  K  S  L  T  K  M  I  Q  K :   R  K  S  R  K  K  L  A  I  L  S  C  G  L  R  E  Y  T  M  L  M  Q  I  P  P  L </second_frame>
            <third_frame>   N  A  K  T  P  R  L  E  R  K  K  :  *  T  I  C  H  *  G  *  I  E  V  D  A  A  W  G  G  V  K  W  R  N  *  G  G  R  A   : G  Y  D  *  K  C  V  G  D  *  R  H  S  C  Q  G  G  N  D  T  S  C  *  C  C  C  N  R  C  Q  C  N  V  S  *  F  P  *  F  V  G  D  T  S  V  L  Q  :  G  A  R  F  *  A  T  Y  R  *  Y  C  W  H  C  I  C  H  G  S  P  R  L  C  T  K   : G  R  T  A  G  K  F  Y  C  G  R  H  C  T  *  T  C  I  L  C  S  R :   F  Y  V  S  V  E  P  S  *  R  V  P  H  Q  K  G  T  H  G  C  C  S  *  *  I  W  R  N  H  W   : N  C  N  P  *  R  C  G  R  G  N  C  W  R  N  L  *  R  K  *  F  K   : R  G  N  P  E  K  N  W  L  Y  C  H  A  G  *  G  N  I  R  C  *  C  K  Y  L  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130660" stop="130694"/>
                    <exon start="131786" stop="131867"/>
                    <exon start="133614" stop="133753"/>
                    <exon start="133841" stop="133919"/>
                    <exon start="134028" stop="134091"/>
                    <exon start="134561" stop="134652"/>
                    <exon start="134787" stop="134852"/>
                    <exon start="135001" stop="135078"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMLKLLGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDASATLVDFHSLWVTHQYSRVPVFEQRIDNIVGIAYAMDLLDYVQKGELLESSIVGDIAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTIGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRAEGIYDVDANTSI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 30 chains have been computed
$ 
$ memory statistics:
$ 264584 bytes spliced alignments in total
$ 21 spliced alignments have been stored
$ 12599 bytes was the average size of a spliced alignment
$ 25576 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1504 bytes was the average size of a predicted gene location
$ 6 megabytes was the average size of the backtrace matrix
$ 33 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-22 08:29:11
-->
