<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-03 17:39:15"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0033E17-C8S6M/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0033E17-C8S6M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-C8S6M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M9086" ref_strand="+" ref_description="SGN-M9086 C2_At5g55640 [cosii_markers]">
      <seq>aaaacagaggattttagattattttagggtttcggattctcttcgaaaaagattcgattttgatgtaatcttatagctatagttgcgtgctttgattcacttctgaggagaatcgagcggcgacggcgacggcgttgcagtgaaatcgatgatcgtcagctgcaccaaatggaccagtcttcggtgcaaaccgctccttcaatcgaagatgacgagtgggacactgaaggatatgtaattccaagcttggaacttgaagattctggccaaaataacagtaatttagttgaagttgaagagtcgaagacagttgcagctgagtctaagaaagaagagaatatatatcttggacctcacggtgctcctccttcacaatcaaagcaacaagagcttggttctgctaataatcgcaagcagaagtttagacagaaactgaaggaagcagacaagaagtacagcggaagtggtcgtgagaataaggtggaacacttgagagagcttgtgggtggaaaaatggctgcaggatcaaagaattcccccaaggattggcttgaccctcattgtgatgaaaatatgttccaaagaaaccaacgttagcgtaatacaagtgtcatttacatactcggaaacccccttcagtaagtcttcctttcggagggaaaagaaagcttttacagaatatttatgtactctcaaataattcccccagtaacctatgttgtggggctaaatatcaccagtcctctggctgtgcttgtgatatacagattcgatctgagctgctctctttcacaatatttggtatatgaattgtttctttgctttgatttgaaaacaaggatgtgtaaggattcagtttaatatggtgaaacgataatgtgttactgcattgttcatcccccattaattcttaaattattgatgcaaatagaaaaaaagactttattttttataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-C8S6M/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="+" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="41404" stop="45511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41704" g_stop="41923" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41924" i_stop="44330" i_length="2407">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44331" g_stop="44431" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="321" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44432" i_stop="44572" i_length="141">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44573" g_stop="45213" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="962" r_length="641" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="+" ref_id="SGN-M9086" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>962</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M9086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41704" e_stop="41923"/>
          <exon e_start="44331" e_stop="44431"/>
          <exon e_start="44573" e_stop="45213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAGAGGATTTTAGATTATTTTAGGGTTTCGGATTCTCTTCGAAAAAGATTCGATTTTGATGTAATCTTATAGCTATAGTTGCGTGCTTTGATTCACTTCTGAGGAGAATCGAGCGGCGACGGCGACGGCGTTGCAGTGAAATCGATGATCGTCAGCTGCACCAAATGGACCAGTCTTCGGTGCAAACCGCTCCTTCAATCGAAGATGACGAGTGGGGTATTACATTCATCTTTTTTCAATTTTTATTTTCATTGTCGTTTGGTTTTCAATTGGATATATGATGTTCAAGTTCATCAGATTAGTGAATTTATGGATAAGTAGGTTTGTTCTGTTGATTATGGATTAGTAGGTTTGTTCTGTTGATGAATTCATCATAGAGATATGAATTATTATCAATTTTGTCCGGTTAATTTCTGTATCAGCTCTAAAAGGAATTTGCTTATCGGATACCTGTTGCCTGTTGGAGGTGGCAGGTGAATTAGTCATGTGCGTGAAAGTTGGCCTGAACACCATGGTCATAAAAAAAAAGTTGTTAATAGTTGCCAGTCTGATGGAGGTGGTTTAACTTGTTCGAATGCTTTGTCATTTGTGGATAGTGATATGACTTTGATTTGATGAATTTTGCTACTTGGATTAACAGAGGAGTAACACTTTAGGTAGTCGTTTTAGTGAGAGAGGCAGTTCGTACCCACTGTAATACTCGGAGTTTGCACAAGCTAGCTGCTGCCCCTGCTAAATTGCCACATATGAAATTGAGCACAGTTTTGCAAAGAAATAGCCCACTTGTTTCTCGAGAAGAGATGGGAAACATGCTCAATATCATTTGATTGAGTAGTTGACTCAGCCCCTTGTTGTTTGGAGAAACCTTTGTCAAAATTTGAATAAAATTCCACTTTAGGTTGGAACAGAACACAACCTTGTGTTATTTTTCTCTTCTCAATATCTCTACACTTGTAGTAGTTATACATGAGTGAGTGTGGAAGACCTACATTGATGGCATTTACTCTAGATGTGACTGGTATTTGACCTAGTTTATTTGCTGTTTCATCTGTCTGTTTGTCTTTTCTTGAAACAAGTTCACGTTCGCCATGCTGGTGTGGAGAATATGATAGCAATTAGCTTTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTGACTTAAAAGCTGGTTTTTGACTTATTTAACTGTTTGGCAATACTCAAAATAGCTTATTTTAAGTTAAAAAAAACTTATTTTAAGCCAAAAGTTAAAAGCTGGGGTAGGGGTGCTTTTTTTTTTAGCTTATAAGCTGTTTTAAGTTGACCATATTTTTATGTTTTTTCCCTTAATATTTTTATACAATCTCCAAATTACCCATATAACCCTAACATCTCTTTCTTCTATTTTTCCCTTTTCACGTTTGGCATAACAACTTCAGCACTTTTATCCAAACGCATAACTGCTTATTTTAAAAATAAGTTTCAGCACTTTCAAAAGTACTTTTTTAAAGCTGCTTTTATTAAGCCCATCCAAACGGGCCCTTAGTGAATGAGTTCATAGACTGGAAATGCTATATATATGTTTTTTTATTACCAAAATGATTGATATATGATGGTAATTTTATTGGTTCATGACTGGTCCATTAAAGGAATTGCTTTTATCCACAATCCCTTGCCGCACTTCTGTTTTGTCCTTGTATACTTCATTGCAAAGGAATTGTAACTGATATGCGTCTTTAAGATTCTTGGGTGTGTGTTGATCTTTCAAACGCTTGTAATTTTATGCTTTATTTGTTTCATTTGCCAATTTTAGACGGAATGTGGAACATGAACAAGAGCATGAAGTGTTTGGTGAATTAACCTTTTCTTCCCACCAAATCTCACTAGGAAAACTAATGACGAGAAGATCTTAACTTTTTTGCCTAGAGGGTTTTGGTTCTAATGTTAAGGTAATACAACATGAAATGTGTTTAGGCAATACATCACAAGTTCAAAACTTGGTTGTTGAACAAAGCCTAATTTTGAAGTGTGGGTTGCAACAAAGCCTAATTTCAAGTGTGGTTTAAGAATGAATTCATGATCAATCGAGTTTCCTAGCTGTAATATCAGATTTCTCTGTCATTCAATTTTTTAGAAAAATTATAACTAAAGAAAATAGAGGAACATGGAAGCTAGCATAAATGATCTATTGCTGTTGTTGTACACTTGCTGTGGTAAATGTTTGACAGAAGAAAGATATCTATCTTTTTCATTGTTGTTGCAGCCTTTTTATTTATAAATTGCTTGGATTAAAGGATGTCTAAAGCTTTTCCCGGGCTTACTGCTTTTTCTGTTTGTGTAAATGCTCGATTGCTGTCTTCGATTGTTTTACTACCTTGCTACTTTGTGTGGGCTCCTCCTCCTTGAATATGTTATGTGTCACTGTGAAGTACTTATTCTCAGACCATTTCGTTTCTCTGCTAACATATGGGGCTTCATAGTTGGTGATTTTGTTTTGTCATCTCGCTGACATTAGATGCCCAAAAGTAGAGCTCGTATTTTATCTCAACTGAATCTGATTTGTTTGGTTCAAACATGCTGGAATTACACTTCAGATAAAATGTGAATTAACAGAATGATCTGACATTTTGAACCATCAGACACTGAAGGATATGTAATTCCAAGCTTGGAACTTGAAGATTCTGGCCAAAATAACAGTAATTTAGTTGAAGTTGAAGAGTCGAAGACAGTTGCAGCTGAGGTTAGCTCTTTAGCATTTCAGTCTCTACCTAAAAGAAATATTTTGTGATGTCAAAATTCTTCCAGCTTACTAGGAGTATCTTTTTTCAAGATGATTTACAGTCCTTCAAATTGATCTCCTTGCTCACTTACTCTTTCACAGTCTAAGAAAGAAGAGAATATATATCTTGGACCTCACGGTGCTCCTCCTTCACAATCAAAGCAACAAGAGCTTGGTTCTGCTAATAATCGCAAGCAGAAGTTTAGACAGAAACTGAAGGAAGCAGACAAGAAGTACAGCGGAAGTGGTCGTGAGAATAAGGTGGAACACTTGAGAGAGCTTGTGGGTGGAAAAATGGCTGCAGGATCAAAGAATTCCCCCAAGGATTGGCTTGACCCTCATTGTGATGAAAATATGTTCCAAAGAAACCAACGTTAGCGTAATACAAGTGTCATTTACATACTCGGAAACCCCCTTCAGTAAGTCTTCCTTTCGGAGGGAAAAGAAAGCTTTTACAGAATATTTATGTACTCTCAAATAATTCCCCCAGTAACCTATGTTGTGGGGCTAAATATCACCAGTCCTCTGGCTGTGCTTGTGATATACAGATTCGATCTGAGCTGCTCTCTTTCACAATATTTGGTATATGAATTGTTTCTTTGCTTTGATTTGAAAACAAGGATGTGTAAGGATTCAGTTTAATATGGTGAAACGATAATGTGTTACTGCATTGTTCATCCCCCATTAATTCTTAAATTATTGATGCAAATAGAAAAAAAGACTTTATTTTTTATAAAAAAATT</genome_strand>
        <mrna_strand>AAAACAGAGGATTTTAGATTATTTTAGGGTTTCGGATTCTCTTCGAAAAAGATTCGATTTTGATGTAATCTTATAGCTATAGTTGCGTGCTTTGATTCACTTCTGAGGAGAATCGAGCGGCGACGGCGACGGCGTTGCAGTGAAATCGATGATCGTCAGCTGCACCAAATGGACCAGTCTTCGGTGCAAACCGCTCCTTCAATCGAAGATGACGAGTGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTGAAGGATATGTAATTCCAAGCTTGGAACTTGAAGATTCTGGCCAAAATAACAGTAATTTAGTTGAAGTTGAAGAGTCGAAGACAGTTGCAGCTGAG.............................................................................................................................................TCTAAGAAAGAAGAGAATATATATCTTGGACCTCACGGTGCTCCTCCTTCACAATCAAAGCAACAAGAGCTTGGTTCTGCTAATAATCGCAAGCAGAAGTTTAGACAGAAACTGAAGGAAGCAGACAAGAAGTACAGCGGAAGTGGTCGTGAGAATAAGGTGGAACACTTGAGAGAGCTTGTGGGTGGAAAAATGGCTGCAGGATCAAAGAATTCCCCCAAGGATTGGCTTGACCCTCATTGTGATGAAAATATGTTCCAAAGAAACCAACGTTAGCGTAATACAAGTGTCATTTACATACTCGGAAACCCCCTTCAGTAAGTCTTCCTTTCGGAGGGAAAAGAAAGCTTTTACAGAATATTTATGTACTCTCAAATAATTCCCCCAGTAACCTATGTTGTGGGGCTAAATATCACCAGTCCTCTGGCTGTGCTTGTGATATACAGATTCGATCTGAGCTGCTCTCTTTCACAATATTTGGTATATGAATTGTTTCTTTGCTTTGATTTGAAAACAAGGATGTGTAAGGATTCAGTTTAATATGGTGAAACGATAATGTGTTACTGCATTGTTCATCCCCCATTAATTCTTAAATTATTGATGCAAATAGAAAAAAAGACTTTATTTTTTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-C8S6M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6888" ref_strand="-" ref_description="SGN-M6888 C2_At1g55880 [cosii_markers]">
      <seq>gaaaagcagaatatgcagttctcatctgaatgcaagggtggattcttcgcagatcagtttgaaaatcttgcaaatttcaggtcacattatgagggcacggggccagagatttgggaacagacaggtggcaatttggatgcttttattgctgctgcaggtacaggtggcactgttgccggtgtttcccagtatttgaaggacaaaaactcaaatatcaagtgcttccttattgatcctcctggctctggtttatataacaaagtaacaaggggagttatgtacacaagggaagaagccgaaggaagaaggctgaagaacccgtttgatacaataaccgaagggattggaataaatagactaactgaaaattttaagatggcaaaacttgatggagctttccgaggcacagatatggaagctgttgaaatgtccaggtatctgttgaaaaatgatggtctatttattggaagttcttcagcgatgaattgcgttggagctgtcagagtggcaaaggcactaggtccagggcatacaattgtgacaatcttgtgtgacagtggtatgagacacttgagtaagtttcacaatgataaatacctatctgaacatgggttgacaccttcagcaactggtctggagttccttcgtcttagttgatctatggctagttcacgattgtttttcggggcatttaaattcatgacagtaccatctcagagctaatattgtatatactatggtaggaaaaggaagttttgataattttttataagtttaacatcgtttgtgtatgtcagcttgatagagaatattagaggcaggctctaattgttttgatctaattttgtaatgtttaactttcttatttgataaaaacctatctcaatcaagagcttttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-C8S6M/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="-" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="46810" stop="44972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46510" g_stop="46313" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46312" i_stop="46233" i_length="80">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46232" g_stop="45997" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="434" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45996" i_stop="45744" i_length="253">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45743" g_stop="45279" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="899" r_length="465" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="901" polyA_stop="911"/>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="-" ref_id="SGN-M6888" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6888" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46510" e_stop="46313"/>
          <exon e_start="46232" e_stop="45997"/>
          <exon e_start="45743" e_stop="45279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCAGAATATGCAGTTCTCATCTGAATGCAAGGGTGGATTCTTCGCAGATCAGTTTGAAAATCTTGCAAATTTCAGGTCACATTATGAGGGCACGGGGCCAGAGATTTGGGAACAGACAGGTGGCAATTTGGATGCTTTTATTGCTGCTGCAGGTACAGGTGGCACTGTTGCCGGTGTTTCCCAGTATTTGAAGGTTGGTTCTCAAGTTCTAAAGTTTCTTCATTTTCTGTTGCCGGATGAAGTATGATTTAGAAGCTTCTGTATTATCAACAGGACAAAAACTCAAATATCAAGTGCTTCCTTATTGATCCTCCTGGCTCTGGTTTATATAACAAAGTAACAAGGGGAGTTATGTACACAAGGGAAGAAGCCGAAGGAAGAAGGCTGAAGAACCCGTTTGATACAATAACCGAAGGGATTGGAATAAATAGACTAACTGAAAATTTTAAGATGGCAAAACTTGATGGAGCTTTCCGAGGCACAGATATGGAAGCTGTTGAAATGTCCAGGTTTGTTCCTCTTCAGTCTACTACACATTATAGTATTTTTCTAGTTGCAAAGATGTCAATATGCAGATAAATGTGTTTGGAACATATTACATACCTCTTTTTAATCTTCTCTTGACACAAAAAGATGAAAGCAACAAGAAGATGATTACCAATGTTTTCCACCATTTTTGTCACCTTATTGAACAACTCTTCGCGGTATTTGATAAGCTATGTCTATGATTAGTGGAGCTTAACTAATTCTATGACTCATCAGGTATCTGTTGAAAAATGATGGTCTATTTATTGGAAGTTCTTCAGCGATGAATTGCGTTGGAGCTGTCAGAGTGGCAAAGGCACTAGGTCCAGGGCATACAATTGTGACAATCTTGTGTGACAGTGGTATGAGACACTTGAGTAAGTTTCACAATGATAAATACCTATCTGAACATGGGTTGACACCTTCAGCAACTGGTCTGGAGTTCCTTCGTCTTAGTTGATCTATGGCTAGTTCACGATTGTTTTTCGGGGCATTTAAATTCATGACAGTACCATCTCAGAGCTAATATTGTATATACTATGGTAGGAAAAGGAAGTTTTGATAATTTTTTATAAGTTTAACATCGTTTGTGTATGTCAGCTTGATAGAGAATATTAGAGGCAGGCTCTAATTGTTTTGATCTAATTTTGTAATGTTTAACTTTCTTATTTGATAAAAACCTATCTCAATCAAGAGCTTTTG</genome_strand>
        <mrna_strand>GAAAAGCAGAATATGCAGTTCTCATCTGAATGCAAGGGTGGATTCTTCGCAGATCAGTTTGAAAATCTTGCAAATTTCAGGTCACATTATGAGGGCACGGGGCCAGAGATTTGGGAACAGACAGGTGGCAATTTGGATGCTTTTATTGCTGCTGCAGGTACAGGTGGCACTGTTGCCGGTGTTTCCCAGTATTTGAAG................................................................................GACAAAAACTCAAATATCAAGTGCTTCCTTATTGATCCTCCTGGCTCTGGTTTATATAACAAAGTAACAAGGGGAGTTATGTACACAAGGGAAGAAGCCGAAGGAAGAAGGCTGAAGAACCCGTTTGATACAATAACCGAAGGGATTGGAATAAATAGACTAACTGAAAATTTTAAGATGGCAAAACTTGATGGAGCTTTCCGAGGCACAGATATGGAAGCTGTTGAAATGTCCAG.............................................................................................................................................................................................................................................................GTATCTGTTGAAAAATGATGGTCTATTTATTGGAAGTTCTTCAGCGATGAATTGCGTTGGAGCTGTCAGAGTGGCAAAGGCACTAGGTCCAGGGCATACAATTGTGACAATCTTGTGTGACAGTGGTATGAGACACTTGAGTAAGTTTCACAATGATAAATACCTATCTGAACATGGGTTGACACCTTCAGCAACTGGTCTGGAGTTCCTTCGTCTTAGTTGATCTATGGCTAGTTCACGATTGTTTTTCGGGGCATTTAAATTCATGACAGTACCATCTCAGAGCTAATATTGTATATACTATGGTAGGAAAAGGAAGTTTTGATAATTTTTTATAAGTTTAACATCGTTTGTGTATGTCAGCTTGATAGAGAATATTAGAGGCAGGCTCTAATTGTTTTGATCTAATTTTGTAATGTTTAACTTTCTTATTTGATAAAAACCTATCTCAATCAAGAGCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-C8S6M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6888-2" ref_strand="+" ref_description="SGN-M6888-2 C2_At1g55880-2 [cosii_markers]">
      <seq>cacggttgctggtgtttcccagtatttgaaggacaaaaattcaaatatcaagtgctttcttattgaccctcctggctctggtttatataacaaagtaacaagaggagtgatgtacacgagggaggaggcggaaggacgaaggctgaagaacccatttgatacaataactgaagggattggaataaatagactaactgaaaattttaagatggcaaaacttgatggagctttccgaggcacagatatggaagctgttgaaatgtccaggtatctgttgaaaaatgatggtctatttattggaagttcttcagctatgaattgtgttggagctgtcagagtggcaaaggcactaggtccagggcatacaattgtgacaatcttgtgtgacagtggtatgagacatttgagtaagtttcataatgctgaatacctatctgaacatgggttgacaccttcagcaactggtttggagttccttcatagttgatctatggctagttcatgattgttttttctgggggttcctcatttaaattcttgacagtaccatctcagagctaatgttgtatatactatggtcggaagaggaattttttttgataattttattataagtttcacttcgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-C8S6M/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="-" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="46643" stop="45106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46343" g_stop="46313" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46312" i_stop="46233" i_length="80">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.884" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46232" g_stop="45997" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="267" r_length="236" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45996" i_stop="45744" i_length="253">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45743" g_stop="45426" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="590" r_length="323" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="627" polyA_stop="637"/>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="-" ref_id="SGN-M6888-2" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6888-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46343" e_stop="46313"/>
          <exon e_start="46232" e_stop="45997"/>
          <exon e_start="45743" e_stop="45426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGTTGCCGGTGTTTCCCAGTATTTGAAGGTTGGTTCTCAAGTTCTAAAGTTTCTTCATTTTCTGTTGCCGGATGAAGTATGATTTAGAAGCTTCTGTATTATCAACAGGACAAAAACTCAAATATCAAGTGCTTCCTTATTGATCCTCCTGGCTCTGGTTTATATAACAAAGTAACAAGGGGAGTTATGTACACAAGGGAAGAAGCCGAAGGAAGAAGGCTGAAGAACCCGTTTGATACAATAACCGAAGGGATTGGAATAAATAGACTAACTGAAAATTTTAAGATGGCAAAACTTGATGGAGCTTTCCGAGGCACAGATATGGAAGCTGTTGAAATGTCCAGGTTTGTTCCTCTTCAGTCTACTACACATTATAGTATTTTTCTAGTTGCAAAGATGTCAATATGCAGATAAATGTGTTTGGAACATATTACATACCTCTTTTTAATCTTCTCTTGACACAAAAAGATGAAAGCAACAAGAAGATGATTACCAATGTTTTCCACCATTTTTGTCACCTTATTGAACAACTCTTCGCGGTATTTGATAAGCTATGTCTATGATTAGTGGAGCTTAACTAATTCTATGACTCATCAGGTATCTGTTGAAAAATGATGGTCTATTTATTGGAAGTTCTTCAGCGATGAATTGCGTTGGAGCTGTCAGAGTGGCAAAGGCACTAGGTCCAGGGCATACAATTGTGACAATCTTGTGTGACAGTGGTATGAGACACTTGAGTAAGTTTCACAATGATAAATACCTATCTGAACATGGGTTGACACCTTCAGCAACTGGTCTGGAGTTCCTTCGTCTTAGTTGATCTATGGCTAGTTCACGATTG-TTTTTC--GGGG-----CATTTAAATTCATGACAGTACCATCTCAGAGCTAATATTGTATATACTATGGTAGGAAAAGGAA</genome_strand>
        <mrna_strand>CACGGTTGCTGGTGTTTCCCAGTATTTGAAG................................................................................GACAAAAATTCAAATATCAAGTGCTTTCTTATTGACCCTCCTGGCTCTGGTTTATATAACAAAGTAACAAGAGGAGTGATGTACACGAGGGAGGAGGCGGAAGGACGAAGGCTGAAGAACCCATTTGATACAATAACTGAAGGGATTGGAATAAATAGACTAACTGAAAATTTTAAGATGGCAAAACTTGATGGAGCTTTCCGAGGCACAGATATGGAAGCTGTTGAAATGTCCAG.............................................................................................................................................................................................................................................................GTATCTGTTGAAAAATGATGGTCTATTTATTGGAAGTTCTTCAGCTATGAATTGTGTTGGAGCTGTCAGAGTGGCAAAGGCACTAGGTCCAGGGCATACAATTGTGACAATCTTGTGTGACAGTGGTATGAGACATTTGAGTAAGTTTCATAATGCTGAATACCTATCTGAACATGGGTTGACACCTTCAGCAACTGGTTTGGAGTTCC-T--TCATAGTTGATCTATGGCTAGTTCATGATTGTTTTTTCTGGGGGTTCCTCATTTAAATTCTTGACAGTACCATCTCAGAGCTAATGTTGTATATACTATGGTCGGAAGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-C8S6M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8268" ref_strand="+" ref_description="SGN-M8268 C2_At4g16400 [cosii_markers]">
      <seq>caaaatatttcattacttcgaattcttccgccatggaaatccaaaaattgcttctcaaattcaaattccacatcttaattgcatctagttttacgattttcatcttcgctcttatttacctagcacctcgatttctcgatgttgttaagtatttttggcctctcttactctctactgctctcttcctaatcgccgtcgttctctttggatggatttctccgccggtatctgaggtttccggtgagaaaaccggtgaaggtattttggaattcgtagcgggtcaacccgaagaacaattacaaacgcatctacatgatttacatgaacatgaaggagacggagaagatgaagaaggtgaaagtagtaaagtagagtgaagtgaaattaatggtttattttctgtttttttttttcagttagatactttttttttctttttaaatttttggatattttctgaataatgttaacttgcattattggcctgcaccttacctttggggcctttcttttgattatgaattcggagtttgaaattaatgaattttgaattttagtctttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-C8S6M/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="+" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="51317" stop="52480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51617" g_stop="52181" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="566" polyA_stop="575"/>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="+" ref_id="SGN-M8268" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51617" e_stop="52181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATATTTCATTACTTCGAATTCTTCCGCCATGGAAATCCAAAAATTGCTTCTCAAATTCAAATTCCACATCTTAATTGCATCTAGTTTTACGATTTTCATCTTCGCTCTTATTTACCTAGCACCTCGATTTCTCGATGTTGTTAAGTATTTTTGGCCTCTCTTACTCTCTACTGCTCTCTTCCTAATCGCCGTCGTTCTCTTTGGATGGATTTCTCCGCCGGTATCTGAGGTTTCCGGTGAGAAAACCGGTGAAGGTATTTTGGAATTCGTAGCGGGTCAACCCGAAGAACAATTACAAACGCATCTACATGATTTACATGAACATGAAGGAGACGGAGAAGATGAAGAAGGTGAAAGTAGTAAAGTAGAGTGAAGTGAAATTAATGGTTTATTTTCTGTTTTTTTTTTTCAGTTAGATACTTTTTTTTTCTTTTTAAATTTTTGTATATTTTCTGAATAATGTTAACTTGCATTATTGGCCTGCACCTTACCTTTGGGGCCTTTCTTTTGATTATGAATTCGGAGTTTGAAATTAATGAATTTTGAATTTTAGTCTTTCAC</genome_strand>
        <mrna_strand>CAAAATATTTCATTACTTCGAATTCTTCCGCCATGGAAATCCAAAAATTGCTTCTCAAATTCAAATTCCACATCTTAATTGCATCTAGTTTTACGATTTTCATCTTCGCTCTTATTTACCTAGCACCTCGATTTCTCGATGTTGTTAAGTATTTTTGGCCTCTCTTACTCTCTACTGCTCTCTTCCTAATCGCCGTCGTTCTCTTTGGATGGATTTCTCCGCCGGTATCTGAGGTTTCCGGTGAGAAAACCGGTGAAGGTATTTTGGAATTCGTAGCGGGTCAACCCGAAGAACAATTACAAACGCATCTACATGATTTACATGAACATGAAGGAGACGGAGAAGATGAAGAAGGTGAAAGTAGTAAAGTAGAGTGAAGTGAAATTAATGGTTTATTTTCTGTTTTTTTTTTTCAGTTAGATACTTTTTTTTTCTTTTTAAATTTTTGGATATTTTCTGAATAATGTTAACTTGCATTATTGGCCTGCACCTTACCTTTGGGGCCTTTCTTTTGATTATGAATTCGGAGTTTGAAATTAATGAATTTTGAATTTTAGTCTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-C8S6M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2339" ref_strand="+" ref_description="SGN-M2339 T1882 [cos_markers]">
      <seq>atcaccaaaaacacttccttctaaaccacgaaatgtggttgctccagatagttcgtcacccaggttacctcctactccagttctattacaacaaccatctcacaaaaagggtcaatggaaatccacaaaactctttcgtcgtgtaaagtcagttttccgttcattccctgtaataaaccctccttgcaaaatgccagtttctaaccgtctgcacgaaggtcatatccatggaggtaaacagatgacaggtactctttttggttttcgaaaagctagagttaatctttcaattcaagagaatccaaggggtgttccattgcttgtacttgaactgtccatacaaacaggtaaactcctccaggatatgggatcaggactagtgagaattgctctcgagtgtgaaaagaatcactcggagaaactcaaactcatcgatgaacctatatggactatgtattgcaatggacgtaaagttgggtatgcagtaaaaagaggacctacagaagatgatcttaaagtaatgcagaatttgcatgctgtatcaatgggagctggcgttctaccatccgagtcctcggagggagaactcacgtatatgagagctttctttgaacgaacagttggatcaaaggactcaaagacgtactatatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-C8S6M/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="+" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="69505" stop="70759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69805" g_stop="70459" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="+" ref_id="SGN-M2339" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M2339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69805" e_stop="70459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCAAAAACACTTCCTTCTAAACCACGAAATGTGGTTGCTCCAGATAGTTCGTCACCCAGGTTACCTCCTACTCCAGTTCTATTACAACAACCATCTCACAAAAAGGGTCAATGGAAATCCACAAAACTCTTTCGTCGTGTAAAGTCAGTTTTCCGTTCATTCCCTGTAATAAACCCTCCTTGCAAAATGCCAGTTTCTAACCGTCTGCACGAAGGTCATATCCATGGAGGTAAACAGATGACAGGTACTCTTTTTGGTTTTCGAAAAGCTAGAGTTAATCTTTCAATTCAAGAGAATCCAAGGGGTGTTCCATTGCTTGTACTTGAACTGTCCATACAAACAGGTAAACTCCTCCAGGATATGGGATCAGGACTAGTGAGAATTGCTCTCGAGTGTGAAAAGAATCACTCGGAGAAACTCAAACTCATCGATGAACCTATATGGACTATGTATTGCAATGGACGTAAAGTTGGGTATGCAGTAAAAAGAGGACCTACAGAAGATGATCTTAAAGTAATGCAGAATTTGCATGCTGTATCAATGGGAGCTGGCGTTCTACCATCCGAGTCCTCGGAGGGAGAACTCACGTATATGAGAGCTTTCTTTGAACGAACAGTTGGATCAAAGGACTCAGAGACGTACTATATGATG</genome_strand>
        <mrna_strand>ATCACCAAAAACACTTCCTTCTAAACCACGAAATGTGGTTGCTCCAGATAGTTCGTCACCCAGGTTACCTCCTACTCCAGTTCTATTACAACAACCATCTCACAAAAAGGGTCAATGGAAATCCACAAAACTCTTTCGTCGTGTAAAGTCAGTTTTCCGTTCATTCCCTGTAATAAACCCTCCTTGCAAAATGCCAGTTTCTAACCGTCTGCACGAAGGTCATATCCATGGAGGTAAACAGATGACAGGTACTCTTTTTGGTTTTCGAAAAGCTAGAGTTAATCTTTCAATTCAAGAGAATCCAAGGGGTGTTCCATTGCTTGTACTTGAACTGTCCATACAAACAGGTAAACTCCTCCAGGATATGGGATCAGGACTAGTGAGAATTGCTCTCGAGTGTGAAAAGAATCACTCGGAGAAACTCAAACTCATCGATGAACCTATATGGACTATGTATTGCAATGGACGTAAAGTTGGGTATGCAGTAAAAAGAGGACCTACAGAAGATGATCTTAAAGTAATGCAGAATTTGCATGCTGTATCAATGGGAGCTGGCGTTCTACCATCCGAGTCCTCGGAGGGAGAACTCACGTATATGAGAGCTTTCTTTGAACGAACAGTTGGATCAAAGGACTCAAAGACGTACTATATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-C8S6M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8273-3" ref_strand="+" ref_description="SGN-M8273-3 C2_At4g16450-3 [cosii_markers]">
      <seq>cttggagtattccgccgccggcaactgaccagaagaagaagaaggaggaaaatgaacacagatatcacagcatcggcaaagcccgaatatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccggaatttctgtcaccgtcggatacctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttaccagaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttccctttaattttctggttcttttggattcccttttgtagtttccccgaaatgttatgaaaacagtgggcatttctctcttctcatgagaactttgttgaaagtaatatctttaataatcagtctgtggttaccaacttattacgtttgcttgttttgctatgaatcatgtattattgtgacttgctaataatgatgagttgacaatgcattatttagtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-C8S6M/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="+" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="151400" stop="153039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151656" g_stop="151863" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151864" i_stop="152355" i_length="492">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="152356" g_stop="152739" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="591" r_length="386" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="+" ref_id="SGN-M8273-3" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8273-3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151656" e_stop="151863"/>
          <exon e_start="152356" e_stop="152739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGAGTA-TCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTGTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCC-TTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCA-TTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAA</genome_strand>
        <mrna_strand>CTTGGAGTATTCCGCCGCCGGCAACTGACCAGAAGAAGA--AG--AAGGAGGAAAATGAACACAGATATCACAGCATCGGCAAAGCCCGAATATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGAATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTACCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCGAAATGTTATGAAAACAGTGGGCATTTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATATCTTTAATAATCAGTCTGTGGTTACCAACTTATTACGTTTGCTTGTTTTGCTATGAATCATGTATTATTGTGACTTGCTAATAATGATGAGTTGACAATGCATTATTTAGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0033E17-C8S6M/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8273-2" ref_strand="+" ref_description="SGN-M8273-2 C2_At4g16450-2 [cosii_markers]">
      <seq>ggagtatccgccgccggcaagtgaccagaagaagagcagctaagaaggaagatgaatactgatatcacagcatcggcaaagcccgagtatccagttgtagatcgaaacccaccgtttactaaaaccgtcggtaatttcaacacactcgattacctccggctcaccaccatcaccgggatttctgtcaccgtcggatacctctccggaataaagccagggattagagggccatcgatggttaccggaggtttgattgggctaatgggtggtttcatgtatgcttatcagaattcagctggcaggctcatgggtttcttcccaaatgaaggagaggtagccaaagccaagtacaagatttaactgcttcccttaattttctggttcttttggattcccttttgtagtttccccaagatgttattaaaacagtgggcattctctcttctcatgagaactttgttgaaagtaataccattaataatcagtctctggttaccaacttaatatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0033E17-C8S6M/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0033E17.1" temp_strand="+" temp_description="C07HBa0033E17.1  AC210350.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0033E17 upload_account_name:france">
        <position start="151359" stop="152959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151659" g_stop="151863" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151864" i_stop="152355" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="152356" g_stop="152655" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="505" r_length="300" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="152656" i_stop="152753" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="152754" g_stop="152767" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="519" r_length="14" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0033E17.1" gen_strand="+" ref_id="SGN-M8273-2" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0033E17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8273-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151659" e_stop="151863"/>
          <exon e_start="152356" e_stop="152655"/>
          <exon e_start="152754" e_stop="152767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCGGTAACTTCTCTATCCTTTACTGTTATCATTCATTCGATTTACTGAAGCTTAAATTGTAAATCTGTTTGGATTTGTCATTTGGATTACACTTTTTATGGAGCCGGGTAGTGCTGAGGGGTTTATCCGATTCTCCTTCGGTGGAAAGTCATATAATTTATACATGGTATATTAGATGTTGAAGCCCTTTAGCTTATTCGTGAGTTTAGTTCTTGGTATTTTGAATCACTTAGTGAAAATTCTTGTTACGTCACTGTAATTATATTTTGGGAAGGAACTAGAAGGTAGGAAGCTGGTTTGACAGAATTCAGTAGTTTTGGTTCAAATCATATATTTATCTTAAGAAATTTATGTAGACATTATTAGTTTGGAATCAGTAATTCAAAAGGAGTATAATCCTGAACCTGTAAGCTTCAAATTCAAATCCTAGCTCAGCTTGTGCTAACATAAGCAAGTTATCTCCTTTGTTATTGATAAATTTTGGATTTTGGGCAGGAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTGTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAATGTTTTGAAATCAGCTTAAATGAGAGAA</genome_strand>
        <mrna_strand>GGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTTTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAAT..................................................................................................ATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="41704" PGL_stop="45213"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41704" e_stop="41923"/>
            <exon e_start="44331" e_stop="44431"/>
            <exon e_start="44573" e_stop="45213"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.669" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41704" e_stop="41923" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.797">
            <gDNA_intron_boundary i_start="41924" i_stop="44330" i_length="2407"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44331" e_stop="44431" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.669">
            <gDNA_intron_boundary i_start="44432" i_stop="44572" i_length="141"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="44573" e_stop="45213" e_length="641"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41704" stop="41923"/>
              <exon start="44331" stop="44431"/>
              <exon start="44573" stop="45213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9086" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACAGAGGATTTTAGATTATTTTAGGGTTTCGGATTCTCTTCGAAAAAGATTCGATTTTGATGTAATCTTATAGCTATAGTTGCGTGCTTTGATTCACTTCTGAGGAGAATCGAGCGGCGACGGCGACGGCGTTGCAGTGAAATCGATGATCGTCAGCTGCACCAAATGGACCAGTCTTCGGTGCAAACCGCTCCTTCAATCGAAGATGACGAGTGGG : ACACTGAAGGATATGTAATTCCAAGCTTGGAACTTGAAGATTCTGGCCAAAATAACAGTAATTTAGTTGAAGTTGAAGAGTCGAAGACAGTTGCAGCTGAG : TCTAAGAAAGAAGAGAATATATATCTTGGACCTCACGGTGCTCCTCCTTCACAATCAAAGCAACAAGAGCTTGGTTCTGCTAATAATCGCAAGCAGAAGTTTAGACAGAAACTGAAGGAAGCAGACAAGAAGTACAGCGGAAGTGGTCGTGAGAATAAGGTGGAACACTTGAGAGAGCTTGTGGGTGGAAAAATGGCTGCAGGATCAAAGAATTCCCCCAAGGATTGGCTTGACCCTCATTGTGATGAAAATATGTTCCAAAGAAACCAACGTTAGCGTAATACAAGTGTCATTTACATACTCGGAAACCCCCTTCAGTAAGTCTTCCTTTCGGAGGGAAAAGAAAGCTTTTACAGAATATTTATGTACTCTCAAATAATTCCCCCAGTAACCTATGTTGTGGGGCTAAATATCACCAGTCCTCTGGCTGTGCTTGTGATATACAGATTCGATCTGAGCTGCTCTCTTTCACAATATTTGGTATATGAATTGTTTCTTTGCTTTGATTTGAAAACAAGGATGTGTAAGGATTCAGTTTAATATGGTGAAACGATAATGTGTTACTGCATTGTTCATCCCCCATTAATTCTTAAATTATTGATGCAAATAGAAAAAAAGACTTTATTTTTTATAAAAAAATT</gDNA_template>
            <first_frame> K  T  E  D  F  R  L  F  *  G  F  G  F  S  S  K  K  I  R  F  *  C  N  L  I  A  I  V  A  C  F  D  S  L  L  R  R  I  E  R  R  R  R  R  R  C  S  E  I  D  D  R  Q  L  H  Q  M  D  Q  S  S  V  Q  T  A  P  S  I  E  D  D  E  W   : D  T  E  G  Y  V  I  P  S  L  E  L  E  D  S  G  Q  N  N  S  N  L  V  E  V  E  E  S  K  T  V  A  A  E  :  S  K  K  E  E  N  I  Y  L  G  P  H  G  A  P  P  S  Q  S  K  Q  Q  E  L  G  S  A  N  N  R  K  Q  K  F  R  Q  K  L  K  E  A  D  K  K  Y  S  G  S  G  R  E  N  K  V  E  H  L  R  E  L  V  G  G  K  M  A  A  G  S  K  N  S  P  K  D  W  L  D  P  H  C  D  E  N  M  F  Q  R  N  Q  R  *  R  N  T  S  V  I  Y  I  L  G  N  P  L  Q  *  V  F  L  S  E  G  K  E  S  F  Y  R  I  F  M  Y  S  Q  I  I  P  P  V  T  Y  V  V  G  L  N  I  T  S  P  L  A  V  L  V  I  Y  R  F  D  L  S  C  S  L  S  Q  Y  L  V  Y  E  L  F  L  C  F  D  L  K  T  R  M  C  K  D  S  V  *  Y  G  E  T  I  M  C  Y  C  I  V  H  P  P  L  I  L  K  L  L  M  Q  I  E  K  K  T  L  F  F  I  K  K   </first_frame>
            <second_frame>  K  Q  R  I  L  D  Y  F  R  V  S  D  S  L  R  K  R  F  D  F  D  V  I  L  *  L  *  L  R  A  L  I  H  F  *  G  E  S  S  G  D  G  D  G  V  A  V  K  S  M  I  V  S  C  T  K  W  T  S  L  R  C  K  P  L  L  Q  S  K  M  T  S  G  :  T  L  K  D  M  *  F  Q  A  W  N  L  K  I  L  A  K  I  T  V  I  *  L  K  L  K  S  R  R  Q  L  Q  L  S :   L  R  K  K  R  I  Y  I  L  D  L  T  V  L  L  L  H  N  Q  S  N  K  S  L  V  L  L  I  I  A  S  R  S  L  D  R  N  *  R  K  Q  T  R  S  T  A  E  V  V  V  R  I  R  W  N  T  *  E  S  L  W  V  E  K  W  L  Q  D  Q  R  I  P  P  R  I  G  L  T  L  I  V  M  K  I  C  S  K  E  T  N  V  S  V  I  Q  V  S  F  T  Y  S  E  T  P  F  S  K  S  S  F  R  R  E  K  K  A  F  T  E  Y  L  C  T  L  K  *  F  P  Q  *  P  M  L  W  G  *  I  S  P  V  L  W  L  C  L  *  Y  T  D  S  I  *  A  A  L  F  H  N  I  W  Y  M  N  C  F  F  A  L  I  *  K  Q  G  C  V  R  I  Q  F  N  M  V  K  R  *  C  V  T  A  L  F  I  P  H  *  F  L  N  Y  *  C  K  *  K  K  R  L  Y  F  L  *  K  N  </second_frame>
            <third_frame>   N  R  G  F  *  I  I  L  G  F  R  I  L  F  E  K  D  S  I  L  M  *  S  Y  S  Y  S  C  V  L  *  F  T  S  E  E  N  R  A  A  T  A  T  A  L  Q  *  N  R  *  S  S  A  A  P  N  G  P  V  F  G  A  N  R  S  F  N  R  R  *  R  V  G :   H  *  R  I  C  N  S  K  L  G  T  *  R  F  W  P  K  *  Q  *  F  S  *  S  *  R  V  E  D  S  C  S  *   : V  *  E  R  R  E  Y  I  S  W  T  S  R  C  S  S  F  T  I  K  A  T  R  A  W  F  C  *  *  S  Q  A  E  V  *  T  E  T  E  G  S  R  Q  E  V  Q  R  K  W  S  *  E  *  G  G  T  L  E  R  A  C  G  W  K  N  G  C  R  I  K  E  F  P  Q  G  L  A  *  P  S  L  *  *  K  Y  V  P  K  K  P  T  L  A  *  Y  K  C  H  L  H  T  R  K  P  P  S  V  S  L  P  F  G  G  K  R  K  L  L  Q  N  I  Y  V  L  S  N  N  S  P  S  N  L  C  C  G  A  K  Y  H  Q  S  S  G  C  A  C  D  I  Q  I  R  S  E  L  L  S  F  T  I  F  G  I  *  I  V  S  L  L  *  F  E  N  K  D  V  *  G  F  S  L  I  W  *  N  D  N  V  L  L  H  C  S  S  P  I  N  S  *  I  I  D  A  N  R  K  K  D  F  I  F  Y  K  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41767" stop="41923"/>
                    <exon start="44331" stop="44431"/>
                    <exon start="44573" stop="44848"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CNLIAIVACFDSLLRRIERRRRRRCSEIDDRQLHQMDQSSVQTAPSIEDDEWDTEGYVIPSLELEDSGQNNSNLVEVEESKTVAAESKKEENIYLGPHGAPPSQSKQQELGSANNRKQKFRQKLKEADKKYSGSGRENKVEHLRELVGGKMAAGSKNSPKDWLDPHCDENMFQRNQR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44894" stop="45112"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFLSEGKESFYRIFMYSQIIPPVTYVVGLNITSPLAVLVIYRFDLSCSLSQYLVYELFLCFDLKTRMCKDSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="46510" PGL_stop="45279"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46510" e_stop="46313"/>
            <exon e_start="46232" e_stop="45997"/>
            <exon e_start="45743" e_stop="45279"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.899" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46510" e_stop="46313" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.884">
            <gDNA_intron_boundary i_start="46312" i_stop="46233" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46232" e_stop="45997" e_length="236"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.899">
            <gDNA_intron_boundary i_start="45996" i_stop="45744" i_length="253"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="45743" e_stop="45279" e_length="465"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46510" stop="46313"/>
              <exon start="46232" stop="45997"/>
              <exon start="45743" stop="45279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6888" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46343" stop="46313"/>
              <exon start="46232" stop="45997"/>
              <exon start="45743" stop="45426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6888-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAGCAGAATATGCAGTTCTCATCTGAATGCAAGGGTGGATTCTTCGCAGATCAGTTTGAAAATCTTGCAAATTTCAGGTCACATTATGAGGGCACGGGGCCAGAGATTTGGGAACAGACAGGTGGCAATTTGGATGCTTTTATTGCTGCTGCAGGTACAGGTGGCACTGTTGCCGGTGTTTCCCAGTATTTGAAG : GACAAAAACTCAAATATCAAGTGCTTCCTTATTGATCCTCCTGGCTCTGGTTTATATAACAAAGTAACAAGGGGAGTTATGTACACAAGGGAAGAAGCCGAAGGAAGAAGGCTGAAGAACCCGTTTGATACAATAACCGAAGGGATTGGAATAAATAGACTAACTGAAAATTTTAAGATGGCAAAACTTGATGGAGCTTTCCGAGGCACAGATATGGAAGCTGTTGAAATGTCCAG : GTATCTGTTGAAAAATGATGGTCTATTTATTGGAAGTTCTTCAGCGATGAATTGCGTTGGAGCTGTCAGAGTGGCAAAGGCACTAGGTCCAGGGCATACAATTGTGACAATCTTGTGTGACAGTGGTATGAGACACTTGAGTAAGTTTCACAATGATAAATACCTATCTGAACATGGGTTGACACCTTCAGCAACTGGTCTGGAGTTCCTTCGTCTTAGTTGATCTATGGCTAGTTCACGATTGTTTTTCGGGGCATTTAAATTCATGACAGTACCATCTCAGAGCTAATATTGTATATACTATGGTAGGAAAAGGAAGTTTTGATAATTTTTTATAAGTTTAACATCGTTTGTGTATGTCAGCTTGATAGAGAATATTAGAGGCAGGCTCTAATTGTTTTGATCTAATTTTGTAATGTTTAACTTTCTTATTTGATAAAAACCTATCTCAATCAAGAGCTTTTG</gDNA_template>
            <first_frame> E  K  Q  N  M  Q  F  S  S  E  C  K  G  G  F  F  A  D  Q  F  E  N  L  A  N  F  R  S  H  Y  E  G  T  G  P  E  I  W  E  Q  T  G  G  N  L  D  A  F  I  A  A  A  G  T  G  G  T  V  A  G  V  S  Q  Y  L  K  :  D  K  N  S  N  I  K  C  F  L  I  D  P  P  G  S  G  L  Y  N  K  V  T  R  G  V  M  Y  T  R  E  E  A  E  G  R  R  L  K  N  P  F  D  T  I  T  E  G  I  G  I  N  R  L  T  E  N  F  K  M  A  K  L  D  G  A  F  R  G  T  D  M  E  A  V  E  M  S  R :   Y  L  L  K  N  D  G  L  F  I  G  S  S  S  A  M  N  C  V  G  A  V  R  V  A  K  A  L  G  P  G  H  T  I  V  T  I  L  C  D  S  G  M  R  H  L  S  K  F  H  N  D  K  Y  L  S  E  H  G  L  T  P  S  A  T  G  L  E  F  L  R  L  S  *  S  M  A  S  S  R  L  F  F  G  A  F  K  F  M  T  V  P  S  Q  S  *  Y  C  I  Y  Y  G  R  K  R  K  F  *  *  F  F  I  S  L  T  S  F  V  Y  V  S  L  I  E  N  I  R  G  R  L  *  L  F  *  S  N  F  V  M  F  N  F  L  I  *  *  K  P  I  S  I  K  S  F   </first_frame>
            <second_frame>  K  S  R  I  C  S  S  H  L  N  A  R  V  D  S  S  Q  I  S  L  K  I  L  Q  I  S  G  H  I  M  R  A  R  G  Q  R  F  G  N  R  Q  V  A  I  W  M  L  L  L  L  L  Q  V  Q  V  A  L  L  P  V  F  P  S  I  *  R :   T  K  T  Q  I  S  S  A  S  L  L  I  L  L  A  L  V  Y  I  T  K  *  Q  G  E  L  C  T  Q  G  K  K  P  K  E  E  G  *  R  T  R  L  I  Q  *  P  K  G  L  E  *  I  D  *  L  K  I  L  R  W  Q  N  L  M  E  L  S  E  A  Q  I  W  K  L  L  K  C  P   : G  I  C  *  K  M  M  V  Y  L  L  E  V  L  Q  R  *  I  A  L  E  L  S  E  W  Q  R  H  *  V  Q  G  I  Q  L  *  Q  S  C  V  T  V  V  *  D  T  *  V  S  F  T  M  I  N  T  Y  L  N  M  G  *  H  L  Q  Q  L  V  W  S  S  F  V  L  V  D  L  W  L  V  H  D  C  F  S  G  H  L  N  S  *  Q  Y  H  L  R  A  N  I  V  Y  T  M  V  G  K  G  S  F  D  N  F  L  *  V  *  H  R  L  C  M  S  A  *  *  R  I  L  E  A  G  S  N  C  F  D  L  I  L  *  C  L  T  F  L  F  D  K  N  L  S  Q  S  R  A  F  </second_frame>
            <third_frame>   K  A  E  Y  A  V  L  I  *  M  Q  G  W  I  L  R  R  S  V  *  K  S  C  K  F  Q  V  T  L  *  G  H  G  A  R  D  L  G  T  D  R  W  Q  F  G  C  F  Y  C  C  C  R  Y  R  W  H  C  C  R  C  F  P  V  F  E   : G  Q  K  L  K  Y  Q  V  L  P  Y  *  S  S  W  L  W  F  I  *  Q  S  N  K  G  S  Y  V  H  K  G  R  S  R  R  K  K  A  E  E  P  V  *  Y  N  N  R  R  D  W  N  K  *  T  N  *  K  F  *  D  G  K  T  *  W  S  F  P  R  H  R  Y  G  S  C  *  N  V  Q  :  V  S  V  E  K  *  W  S  I  Y  W  K  F  F  S  D  E  L  R  W  S  C  Q  S  G  K  G  T  R  S  R  A  Y  N  C  D  N  L  V  *  Q  W  Y  E  T  L  E  *  V  S  Q  *  *  I  P  I  *  T  W  V  D  T  F  S  N  W  S  G  V  P  S  S  *  L  I  Y  G  *  F  T  I  V  F  R  G  I  *  I  H  D  S  T  I  S  E  L  I  L  Y  I  L  W  *  E  K  E  V  L  I  I  F  Y  K  F  N  I  V  C  V  C  Q  L  D  R  E  Y  *  R  Q  A  L  I  V  L  I  *  F  C  N  V  *  L  S  Y  L  I  K  T  Y  L  N  Q  E  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46510" stop="46313"/>
                    <exon start="46232" stop="45997"/>
                    <exon start="45743" stop="45521"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKQNMQFSSECKGGFFADQFENLANFRSHYEGTGPEIWEQTGGNLDAFIAAAGTGGTVAGVSQYLKDKNSNIKCFLIDPPGSGLYNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTENFKMAKLDGAFRGTDMEAVEMSRYLLKNDGLFIGSSSAMNCVGAVRVAKALGPGHTIVTILCDSGMRHLSKFHNDKYLSEHGLTPSATGLEFLRLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="51617" PGL_stop="52181"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51617" e_stop="52181"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="51617" e_stop="52181" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51617" stop="52181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8268" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATATTTCATTACTTCGAATTCTTCCGCCATGGAAATCCAAAAATTGCTTCTCAAATTCAAATTCCACATCTTAATTGCATCTAGTTTTACGATTTTCATCTTCGCTCTTATTTACCTAGCACCTCGATTTCTCGATGTTGTTAAGTATTTTTGGCCTCTCTTACTCTCTACTGCTCTCTTCCTAATCGCCGTCGTTCTCTTTGGATGGATTTCTCCGCCGGTATCTGAGGTTTCCGGTGAGAAAACCGGTGAAGGTATTTTGGAATTCGTAGCGGGTCAACCCGAAGAACAATTACAAACGCATCTACATGATTTACATGAACATGAAGGAGACGGAGAAGATGAAGAAGGTGAAAGTAGTAAAGTAGAGTGAAGTGAAATTAATGGTTTATTTTCTGTTTTTTTTTTTCAGTTAGATACTTTTTTTTTCTTTTTAAATTTTTGTATATTTTCTGAATAATGTTAACTTGCATTATTGGCCTGCACCTTACCTTTGGGGCCTTTCTTTTGATTATGAATTCGGAGTTTGAAATTAATGAATTTTGAATTTTAGTCTTTCAC</gDNA_template>
            <first_frame> Q  N  I  S  L  L  R  I  L  P  P  W  K  S  K  N  C  F  S  N  S  N  S  T  S  *  L  H  L  V  L  R  F  S  S  S  L  L  F  T  *  H  L  D  F  S  M  L  L  S  I  F  G  L  S  Y  S  L  L  L  S  S  *  S  P  S  F  S  L  D  G  F  L  R  R  Y  L  R  F  P  V  R  K  P  V  K  V  F  W  N  S  *  R  V  N  P  K  N  N  Y  K  R  I  Y  M  I  Y  M  N  M  K  E  T  E  K  M  K  K  V  K  V  V  K  *  S  E  V  K  L  M  V  Y  F  L  F  F  F  F  S  *  I  L  F  F  S  F  *  I  F  V  Y  F  L  N  N  V  N  L  H  Y  W  P  A  P  Y  L  W  G  L  S  F  D  Y  E  F  G  V  *  N  *  *  I  L  N  F  S  L  S  </first_frame>
            <second_frame>  K  I  F  H  Y  F  E  F  F  R  H  G  N  P  K  I  A  S  Q  I  Q  I  P  H  L  N  C  I  *  F  Y  D  F  H  L  R  S  Y  L  P  S  T  S  I  S  R  C  C  *  V  F  L  A  S  L  T  L  Y  C  S  L  P  N  R  R  R  S  L  W  M  D  F  S  A  G  I  *  G  F  R  *  E  N  R  *  R  Y  F  G  I  R  S  G  S  T  R  R  T  I  T  N  A  S  T  *  F  T  *  T  *  R  R  R  R  R  *  R  R  *  K  *  *  S  R  V  K  *  N  *  W  F  I  F  C  F  F  F  S  V  R  Y  F  F  F  L  F  K  F  L  Y  I  F  *  I  M  L  T  C  I  I  G  L  H  L  T  F  G  A  F  L  L  I  M  N  S  E  F  E  I  N  E  F  *  I  L  V  F  H </second_frame>
            <third_frame>   K  Y  F  I  T  S  N  S  S  A  M  E  I  Q  K  L  L  L  K  F  K  F  H  I  L  I  A  S  S  F  T  I  F  I  F  A  L  I  Y  L  A  P  R  F  L  D  V  V  K  Y  F  W  P  L  L  L  S  T  A  L  F  L  I  A  V  V  L  F  G  W  I  S  P  P  V  S  E  V  S  G  E  K  T  G  E  G  I  L  E  F  V  A  G  Q  P  E  E  Q  L  Q  T  H  L  H  D  L  H  E  H  E  G  D  G  E  D  E  E  G  E  S  S  K  V  E  *  S  E  I  N  G  L  F  S  V  F  F  F  Q  L  D  T  F  F  F  F  L  N  F  C  I  F  S  E  *  C  *  L  A  L  L  A  C  T  L  P  L  G  P  F  F  *  L  *  I  R  S  L  K  L  M  N  F  E  F  *  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51619" stop="51993"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYFITSNSSAMEIQKLLLKFKFHILIASSFTIFIFALIYLAPRFLDVVKYFWPLLLSTALFLIAVVLFGWISPPVSEVSGEKTGEGILEFVAGQPEEQLQTHLHDLHEHEGDGEDEEGESSKVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="69805" PGL_stop="70459"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69805" e_stop="70459"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="69805" e_stop="70459" e_length="655"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69805" stop="70459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2339" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCACCAAAAACACTTCCTTCTAAACCACGAAATGTGGTTGCTCCAGATAGTTCGTCACCCAGGTTACCTCCTACTCCAGTTCTATTACAACAACCATCTCACAAAAAGGGTCAATGGAAATCCACAAAACTCTTTCGTCGTGTAAAGTCAGTTTTCCGTTCATTCCCTGTAATAAACCCTCCTTGCAAAATGCCAGTTTCTAACCGTCTGCACGAAGGTCATATCCATGGAGGTAAACAGATGACAGGTACTCTTTTTGGTTTTCGAAAAGCTAGAGTTAATCTTTCAATTCAAGAGAATCCAAGGGGTGTTCCATTGCTTGTACTTGAACTGTCCATACAAACAGGTAAACTCCTCCAGGATATGGGATCAGGACTAGTGAGAATTGCTCTCGAGTGTGAAAAGAATCACTCGGAGAAACTCAAACTCATCGATGAACCTATATGGACTATGTATTGCAATGGACGTAAAGTTGGGTATGCAGTAAAAAGAGGACCTACAGAAGATGATCTTAAAGTAATGCAGAATTTGCATGCTGTATCAATGGGAGCTGGCGTTCTACCATCCGAGTCCTCGGAGGGAGAACTCACGTATATGAGAGCTTTCTTTGAACGAACAGTTGGATCAAAGGACTCAGAGACGTACTATATGATG</gDNA_template>
            <first_frame> I  T  K  N  T  S  F  *  T  T  K  C  G  C  S  R  *  F  V  T  Q  V  T  S  Y  S  S  S  I  T  T  T  I  S  Q  K  G  S  M  E  I  H  K  T  L  S  S  C  K  V  S  F  P  F  I  P  C  N  K  P  S  L  Q  N  A  S  F  *  P  S  A  R  R  S  Y  P  W  R  *  T  D  D  R  Y  S  F  W  F  S  K  S  *  S  *  S  F  N  S  R  E  S  K  G  C  S  I  A  C  T  *  T  V  H  T  N  R  *  T  P  P  G  Y  G  I  R  T  S  E  N  C  S  R  V  *  K  E  S  L  G  E  T  Q  T  H  R  *  T  Y  M  D  Y  V  L  Q  W  T  *  S  W  V  C  S  K  K  R  T  Y  R  R  *  S  *  S  N  A  E  F  A  C  C  I  N  G  S  W  R  S  T  I  R  V  L  G  G  R  T  H  V  Y  E  S  F  L  *  T  N  S  W  I  K  G  L  R  D  V  L  Y  D  </first_frame>
            <second_frame>  S  P  K  T  L  P  S  K  P  R  N  V  V  A  P  D  S  S  S  P  R  L  P  P  T  P  V  L  L  Q  Q  P  S  H  K  K  G  Q  W  K  S  T  K  L  F  R  R  V  K  S  V  F  R  S  F  P  V  I  N  P  P  C  K  M  P  V  S  N  R  L  H  E  G  H  I  H  G  G  K  Q  M  T  G  T  L  F  G  F  R  K  A  R  V  N  L  S  I  Q  E  N  P  R  G  V  P  L  L  V  L  E  L  S  I  Q  T  G  K  L  L  Q  D  M  G  S  G  L  V  R  I  A  L  E  C  E  K  N  H  S  E  K  L  K  L  I  D  E  P  I  W  T  M  Y  C  N  G  R  K  V  G  Y  A  V  K  R  G  P  T  E  D  D  L  K  V  M  Q  N  L  H  A  V  S  M  G  A  G  V  L  P  S  E  S  S  E  G  E  L  T  Y  M  R  A  F  F  E  R  T  V  G  S  K  D  S  E  T  Y  Y  M  M </second_frame>
            <third_frame>   H  Q  K  H  F  L  L  N  H  E  M  W  L  L  Q  I  V  R  H  P  G  Y  L  L  L  Q  F  Y  Y  N  N  H  L  T  K  R  V  N  G  N  P  Q  N  S  F  V  V  *  S  Q  F  S  V  H  S  L  *  *  T  L  L  A  K  C  Q  F  L  T  V  C  T  K  V  I  S  M  E  V  N  R  *  Q  V  L  F  L  V  F  E  K  L  E  L  I  F  Q  F  K  R  I  Q  G  V  F  H  C  L  Y  L  N  C  P  Y  K  Q  V  N  S  S  R  I  W  D  Q  D  *  *  E  L  L  S  S  V  K  R  I  T  R  R  N  S  N  S  S  M  N  L  Y  G  L  C  I  A  M  D  V  K  L  G  M  Q  *  K  E  D  L  Q  K  M  I  L  K  *  C  R  I  C  M  L  Y  Q  W  E  L  A  F  Y  H  P  S  P  R  R  E  N  S  R  I  *  E  L  S  L  N  E  Q  L  D  Q  R  T  Q  R  R  T  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69806" stop="70459"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPKTLPSKPRNVVAPDSSSPRLPPTPVLLQQPSHKKGQWKSTKLFRRVKSVFRSFPVINPPCKMPVSNRLHEGHIHGGKQMTGTLFGFRKARVNLSIQENPRGVPLLVLELSIQTGKLLQDMGSGLVRIALECEKNHSEKLKLIDEPIWTMYCNGRKVGYAVKRGPTEDDLKVMQNLHAVSMGAGVLPSESSEGELTYMRAFFERTVGSKDSETYYMM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="151656" PGL_stop="152767"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="151656" e_stop="151863"/>
            <exon e_start="152356" e_stop="152739"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.928"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="151656" e_stop="151863" e_length="208"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="151864" i_stop="152355" i_length="492"/>
          </intron>
          <exon e_serial="2" e_score="0.938">
            <gDNA_exon_boundary e_start="152356" e_stop="152739" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151656" stop="151863"/>
              <exon start="152356" stop="152739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8273-3" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG : GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTGTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAATATGATTTCTTGTGTTGCGATGAATCATGTATTATTGTTACTTGCTAATAATGATGTGTTGACTATGCATTATTTAGTATGATAA</gDNA_template>
            <first_frame> T  G  V  S  A  A  G  K  *  P  E  E  E  Q  L  R  R  K  M  N  T  D  I  T  A  S  A  K  P  E  Y  P  V  V  D  R  N  P  P  F  T  K  T  V  G  N  F  N  T  L  D  Y  L  R  L  T  T  I  T  G  I  S  V  T  V  G  Y  L  S   : G  I  K  P  G  I  R  G  P  S  M  V  T  G  G  L  I  G  L  M  G  G  V  M  Y  A  Y  Q  N  S  A  G  R  L  M  G  F  F  P  N  E  G  E  V  A  K  A  K  Y  K  I  *  L  L  P  L  I  F  W  F  F  W  I  P  F  C  S  F  P  K  M  L  L  K  Q  W  A  F  S  L  L  M  R  T  L  L  K  V  I  P  L  I  I  S  L  W  L  P  T  *  Y  D  F  L  C  C  D  E  S  C  I  I  V  T  C  *  *  *  C  V  D  Y  A  L  F  S  M  I  </first_frame>
            <second_frame>  L  E  Y  P  P  P  A  S  D  Q  K  K  S  S  *  E  G  R  *  I  L  I  S  Q  H  R  Q  S  P  S  I  Q  L  *  I  E  T  H  R  L  L  K  P  S  V  I  S  T  H  S  I  T  S  G  S  P  P  S  P  G  F  L  S  P  S  D  T  S  P  :  E  *  S  Q  G  L  E  G  H  R  W  L  P  E  V  *  L  G  *  W  V  V  S  C  M  L  I  R  I  Q  L  A  G  S  W  V  S  S  Q  M  K  E  R  *  P  K  P  S  T  R  F  N  C  F  P  *  F  S  G  S  F  G  F  P  F  V  V  S  P  R  C  Y  *  N  S  G  H  S  L  F  S  *  E  L  C  *  K  *  Y  H  *  *  S  V  S  G  Y  Q  L  N  M  I  S  C  V  A  M  N  H  V  L  L  L  L  A  N  N  D  V  L  T  M  H  Y  L  V  *  * </second_frame>
            <third_frame>   W  S  I  R  R  R  Q  V  T  R  R  R  A  A  K  K  E  D  E  Y  *  Y  H  S  I  G  K  A  R  V  S  S  C  R  S  K  P  T  V  Y  *  N  R  R  *  F  Q  H  T  R  L  P  P  A  H  H  H  H  R  D  F  C  H  R  R  I  P  L  R :   N  K  A  R  D  *  R  A  I  D  G  Y  R  R  F  D  W  A  N  G  W  C  H  V  C  L  S  E  F  S  W  Q  A  H  G  F  L  P  K  *  R  R  G  S  Q  S  Q  V  Q  D  L  T  A  S  L  N  F  L  V  L  L  D  S  L  L  *  F  P  Q  D  V  I  K  T  V  G  I  L  S  S  H  E  N  F  V  E  S  N  T  I  N  N  Q  S  L  V  T  N  L  I  *  F  L  V  L  R  *  I  M  Y  Y  C  Y  L  L  I  M  M  C  *  L  C  I  I  *  Y  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="151683" stop="151863"/>
                    <exon start="152356" stop="152510"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEEEQLRRKMNTDITASAKPEYPVVDRNPPFTKTVGNFNTLDYLRLTTITGISVTVGYLSGIKPGIRGPSMVTGGLIGLMGGVMYAYQNSAGRLMGFFPNEGEVAKAKYKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="151659" e_stop="151863"/>
            <exon e_start="152356" e_stop="152655"/>
            <exon e_start="152754" e_stop="152767"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.960" e_score="0.997"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="151659" e_stop="151863" e_length="205"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="151864" i_stop="152355" i_length="492"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="152356" e_stop="152655" e_length="300"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="152656" i_stop="152753" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="0.571">
            <gDNA_exon_boundary e_start="152754" e_stop="152767" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151659" stop="151863"/>
              <exon start="152356" stop="152655"/>
              <exon start="152754" stop="152767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8273-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAGTATCCGCCGCCGGCAAGTGACCAGAAGAAGAGCAGCTAAGAAGGAAGATGAATACTGATATCACAGCATCGGCAAAGCCCGAGTATCCAGTTGTAGATCGAAACCCACCGTTTACTAAAACCGTCGGTAATTTCAACACACTCGATTACCTCCGGCTCACCACCATCACCGGGATTTCTGTCACCGTCGGATACCTCTCCG : GAATAAAGCCAGGGATTAGAGGGCCATCGATGGTTACCGGAGGTTTGATTGGGCTAATGGGTGGTGTCATGTATGCTTATCAGAATTCAGCTGGCAGGCTCATGGGTTTCTTCCCAAATGAAGGAGAGGTAGCCAAAGCCAAGTACAAGATTTAACTGCTTCCCTTAATTTTCTGGTTCTTTTGGATTCCCTTTTGTAGTTTCCCCAAGATGTTATTAAAACAGTGGGCATTCTCTCTTCTCATGAGAACTTTGTTGAAAGTAATACCATTAATAATCAGTCTCTGGTTACCAACTTAAT : CTTAAATGAGAGAA</gDNA_template>
            <first_frame> G  V  S  A  A  G  K  *  P  E  E  E  Q  L  R  R  K  M  N  T  D  I  T  A  S  A  K  P  E  Y  P  V  V  D  R  N  P  P  F  T  K  T  V  G  N  F  N  T  L  D  Y  L  R  L  T  T  I  T  G  I  S  V  T  V  G  Y  L  S   : G  I  K  P  G  I  R  G  P  S  M  V  T  G  G  L  I  G  L  M  G  G  V  M  Y  A  Y  Q  N  S  A  G  R  L  M  G  F  F  P  N  E  G  E  V  A  K  A  K  Y  K  I  *  L  L  P  L  I  F  W  F  F  W  I  P  F  C  S  F  P  K  M  L  L  K  Q  W  A  F  S  L  L  M  R  T  L  L  K  V  I  P  L  I  I  S  L  W  L  P  T  *   : S  *  M  R  E </first_frame>
            <second_frame>  E  Y  P  P  P  A  S  D  Q  K  K  S  S  *  E  G  R  *  I  L  I  S  Q  H  R  Q  S  P  S  I  Q  L  *  I  E  T  H  R  L  L  K  P  S  V  I  S  T  H  S  I  T  S  G  S  P  P  S  P  G  F  L  S  P  S  D  T  S  P  :  E  *  S  Q  G  L  E  G  H  R  W  L  P  E  V  *  L  G  *  W  V  V  S  C  M  L  I  R  I  Q  L  A  G  S  W  V  S  S  Q  M  K  E  R  *  P  K  P  S  T  R  F  N  C  F  P  *  F  S  G  S  F  G  F  P  F  V  V  S  P  R  C  Y  *  N  S  G  H  S  L  F  S  *  E  L  C  *  K  *  Y  H  *  *  S  V  S  G  Y  Q  L  N  :  L  K  *  E   </second_frame>
            <third_frame>   S  I  R  R  R  Q  V  T  R  R  R  A  A  K  K  E  D  E  Y  *  Y  H  S  I  G  K  A  R  V  S  S  C  R  S  K  P  T  V  Y  *  N  R  R  *  F  Q  H  T  R  L  P  P  A  H  H  H  H  R  D  F  C  H  R  R  I  P  L  R :   N  K  A  R  D  *  R  A  I  D  G  Y  R  R  F  D  W  A  N  G  W  C  H  V  C  L  S  E  F  S  W  Q  A  H  G  F  L  P  K  *  R  R  G  S  Q  S  Q  V  Q  D  L  T  A  S  L  N  F  L  V  L  L  D  S  L  L  *  F  P  Q  D  V  I  K  T  V  G  I  L  S  S  H  E  N  F  V  E  S  N  T  I  N  N  Q  S  L  V  T  N  L  I :   L  N  E  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0033E17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="151683" stop="151863"/>
                    <exon start="152356" stop="152510"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEEEQLRRKMNTDITASAKPEYPVVDRNPPFTKTVGNFNTLDYLRLTTITGISVTVGYLSGIKPGIRGPSMVTGGLIGLMGGVMYAYQNSAGRLMGFFPNEGEVAKAKYKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 24 chains have been computed
$ 
$ memory statistics:
$ 13944 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 1992 bytes was the average size of a spliced alignment
$ 10544 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2108 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 27 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-03 17:39:28
-->
