<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-07 02:49:42"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0038A02-d5D42/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-7eVGVb/sgn_ests_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7eVGVb/sgn_ests_tomato_potato" ref_id="SGN-E390866" ref_strand="-" ref_description="SGN-E390866 [TUS-47-I18]">
      <seq>ggagaaagtagttaacaatgaatctggaggggagttcacggtctccggcgctgatgaaatcgtcaatgctctttaagcttatcactactgcctcccaagtgttctggctctacaatgagcttctagaatctatgccaataatgtttttgatatatctgtagtcgctaatataagacttcgtatgaagaatgctttgtggaaataagaatttaatgctttactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0038A02-d5D42/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0038A02.1" temp_strand="+" temp_description="C07HBa0038A02.1  AC212612.1 htgs_phase:1 submitted_to_sgn_as:gi|158262108|gb|AC212612.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0038A02, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces">
        <position start="9070" stop="9815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9292" g_stop="9514" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0038A02.1" gen_strand="+" ref_id="SGN-E390866" ref_strand="-">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0038A02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390866" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9292" e_stop="9514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCACTACTGCCTCCCCAGTGTTTTGCCTTTACAATGAGGTTCTAGAATCTATGCCCATAATGTTTTTGATATATCTGTAGTCGCTAATATCAAACTTTGTATGAAGAATGCTTTGTGGAAATAAGAATTTCTTGCTTTAGAA</genome_strand>
        <mrna_strand>GGAGAAAGTAGTTAACAATGAATCTGGAGGGGAGTTCACGGTCTCCGGCGCTGATGAAATCGTCAATGCTCTTTAAGCTTATCACTACTGCCTCCCAAGTGTTCTGGCTCTACAATGAGCTTCTAGAATCTATGCCAATAATGTTTTTGATATATCTGTAGTCGCTAATATAAGACTTCGTATGAAGAATGCTTTGTGGAAATAAGAATTTAATGCTTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7eVGVb/sgn_ests_tomato_potato" ref_id="SGN-E578039" ref_strand="+" ref_description="SGN-E578039 [LE08DB10]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0038A02-d5D42/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0038A02.1" temp_strand="-" temp_description="C07HBa0038A02.1  AC212612.1 htgs_phase:1 submitted_to_sgn_as:gi|158262108|gb|AC212612.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0038A02, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces">
        <position start="29286" stop="27974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28987" g_stop="28274" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0038A02.1" gen_strand="-" ref_id="SGN-E578039" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0038A02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28987" e_stop="28274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGGCCTTTGTTCCAAAACACTTCAACTCTTGGAATATGGGTACTGGAATTACTTCTCCGAACATCATGACAAACCTGCA-GACGGACCGTCATAAACACGACGGACCGTCACAAGCTTCGTAACCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACTGTCACAAGCACGACGGATCGTCATAAGCTCCATAAGTGGTCTCTTCTGCATTTCTTCGCTTAAAATCTCCGCAATCAGCTTTGGACATATTTCCTGCAAAATAAAAAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAACCTTAAGGAAAAAGTATTAGTAATACCGTGAAACCACGGTATATCAACACCCTCAACTTTAATTCGTTTTTTGTCCTCAAGCGACGCACTATGACTCAATACACAATCTTTGTACGATAGTATCGATATTTCTTCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGCTTGATATATGTGGGATCAGAACATGACACAGACTCGCCATGCACTAACACATATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCCAGCATTGCAACTAGTGTCCTCGCTTTTA-ACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7eVGVb/sgn_ests_tomato_potato" ref_id="SGN-E286708" ref_strand="+" ref_description="SGN-E286708 [cLES-14-D9]">
      <seq>tcgcgaggtccgtcatggtcacgacggaccgtcatggactccgtcgtcccatacttatgcaatttcttttgttgctcttcttcattaccctcaacggcaagtatggcggaccgtcataggcacaacggtccgtcgagggccttcgttccaaaacactttaactcttggaatatgggtactgggattacttctctgaacttcatgacgaacctgtaggacggaccgtcatagacacgatggaccgtcacaagcttcgtaaccccatacttggtcagacttccccatcttccttcagcagctgcactacgctgacacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtctcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaataaaaagaaactaatatagaaattagcacaaaaaggattttagacacactaaacttaaggaaaaagtattaataataccatgaaaccacggtatatcacttggccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0038A02-d5D42/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0038A02.1" temp_strand="-" temp_description="C07HBa0038A02.1  AC212612.1 htgs_phase:1 submitted_to_sgn_as:gi|158262108|gb|AC212612.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0038A02, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces">
        <position start="29421" stop="28299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29121" g_stop="28607" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0038A02.1" gen_strand="-" ref_id="SGN-E286708" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0038A02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29121" e_stop="28607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCGACGGATCGTCATGGTCACGACGGACCGTCATGCACTTCGTCGTCCTATACTTATGAAATTTCTTTTACTGCTCTTCTTCATTACCCTTGACGACAAGTATGAAGGACCGTCATAGACACAACGATCCGTTGAGGGCCTTTGTTCCAAAACACTTCAACTCTTGGAATATGGGTACTGGAATTACTTCTCCGAACATCATGACAAACCTGCA-GACGGACCGTCATAAACACGACGGACCGTCACAAGCTTCGTAACCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACTGTCACAAGCACGACGGATCGTCATAAGCTCCATAAGTGGTCTCTTCTGCATTTCTTCGCTTAAAATCTCCGCAATCAGCTTTGGACATATTTCCTGCAAAATAAAAAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAACCTTAAGGAAAAAGTATTAGTAATACCGTGAAACCACG</genome_strand>
        <mrna_strand>TCGCGA-GGTCCGTCATGGTCACGACGGACCGTCATGGACTCCGTCGTCCCATACTTATGCAATTTCTTTTGTTGCTCTTCTTCATTACCCTCAACGGCAAGTATGGCGGACCGTCATAGGCACAACGGTCCGTCGAGGGCCTTCGTTCCAAAACACTTTAACTCTTGGAATATGGGTACTGGGATTACTTCTCTGAACTTCATGACGAACCTGTAGGACGGACCGTCATAGACACGATGGACCGTCACAAGCTTCGTAACCCCATACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGACACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAATAAAAAGAAACTAATATAGAAATTAGCACAAAAAGGATTTTAGACACACTAAACTTAAGGAAAAAGTATTAATAATACCATGAAACCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7eVGVb/sgn_ests_tomato_potato" ref_id="SGN-E351864" ref_strand="+" ref_description="SGN-E351864 [cTOS-8-K24]">
      <seq>acttcgaaggtgtttctccctgtatcagacttcctagtactccaaactttgttattccgggagattttcactaatttttaagcgatctcagcataagggcattctccataagatccaccttctataatgtccaacacttctttgttactatcatcctgtccctgatagaactatttcttccgtgactcatcatctatacagtgatttggaacacttctcaagaatgaggtgatctatcccaagaactactaactgactctactggtagtgccacaaaattatttactctgtctttgtggtttagtttcttcgagattggatagtagagtgccaagaaaacatctcttaattggttccaagtgaagattgagttgcatggaagctcagtgaaccatataggagcctctcccttcagtgagagaggaaacactgtgagccctattacatctagatccatgtcaggcctccccacactacatttacacactgcccttaccttagctatttgggcatgtggatcctcaggcggtagccctgaaaacaaacctctagcagtgagcatttgcatcaggctactagttaccataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0038A02-d5D42/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0038A02.1" temp_strand="-" temp_description="C07HBa0038A02.1  AC212612.1 htgs_phase:1 submitted_to_sgn_as:gi|158262108|gb|AC212612.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0038A02, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces">
        <position start="69219" stop="68032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68919" g_stop="68332" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0038A02.1" gen_strand="-" ref_id="SGN-E351864" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0038A02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68919" e_stop="68332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAGCTTTGTTATTCCGGGAGATTTTCTCTAATTTTTCGGCAATTTCAGCATAAGGACATTCCCCATAAGATCCACCTGCTATAGTGTCCAACACCGCTTTGTTATTATCATCCTGTCCCCGATAGAACTATTCCTTCAGTGACTCATCATCTATACGATGATTTGGAACACTTCTCAAGAATGAGGTGAATCTATCCCAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTA-TT-CACTGTCTTTGTGGTTTAGTTTCTTGGAGATCGGATAGTAGAGTGCTAAGAAGACATCCCTTAGTTGGTTCCAAGTGAAGATTGAGTTGTATGGGAGCTCAGTGAAGCACATAGCAGCCTCTCCCGTCAGTGAGAGAGGAAACACTCAGAGACTTATTACATCTAAATCCAAATCAGGCCTCCCTACACAACTTTTACACACTGCCCTTACCTTAGCTATATGGGCATGTGGATACTCAGAAGGTATCCCTGAAAACAAACCTCTGGTAGTGAGCATTTGCATCAGGCTACTAGTTACCACAGA</genome_strand>
        <mrna_strand>ACTTCGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAACTTTGTTATTCCGGGAGATTTTCACTAATTTTTAAGCGATCTCAGCATAAGGGCATTCTCCATAAGATCCACCTTCTATAATGTCCAACACTTCTTTGTTACTATCATCCTGTCCCTGATAGAACTATTTCTTCCGTGACTCATCATCTATACAGTGATTTGGAACACTTCTCAAGAATGAGGTG-ATCTATCCCAAGAACTACTAACTGACTCTACTGGTAGTGCCACAAAATTATTTACTCTGTCTTTGTGGTTTAGTTTCTTCGAGATTGGATAGTAGAGTGCCAAGAAAACATCTCTTAATTGGTTCCAAGTGAAGATTGAGTTGCATGGAAGCTCAGTGAACCATATAGGAGCCTCTCCCTTCAGTGAGAGAGGAAACACTGTGAGCCCTATTACATCTAGATCCATGTCAGGCCTCCCCACACTACATTTACACACTGCCCTTACCTTAGCTATTTGGGCATGTGGATCCTCAGGCGGTAGCCCTGAAAACAAACCTCTAGCAGTGAGCATTTGCATCAGGCTACTAGTTACCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7eVGVb/sgn_ests_tomato_potato" ref_id="SGN-E273387" ref_strand="+" ref_description="SGN-E273387 [cLEN-3-J20]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0038A02-d5D42/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0038A02.1" temp_strand="-" temp_description="C07HBa0038A02.1  AC212612.1 htgs_phase:1 submitted_to_sgn_as:gi|158262108|gb|AC212612.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0038A02, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces">
        <position start="82435" stop="81434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82135" g_stop="81734" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0038A02.1" gen_strand="-" ref_id="SGN-E273387" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.036" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0038A02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82135" e_stop="81734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAGGGATTTTCATATAACCTTCATTGTCTAGCTAGACATTACAATTATTCATTACATGCATTCAAGTTT-TCATATGTTGCCAAATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAATCTTTATGTCTTAAGGCACAAATCGTATTTGATATCTTATGGTTATACTATCGCATAATAATTTATTTGTATCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACATAATATACTTGAATTGTGCATTTTACTTGGTCAACCATTTATTTGTCCACACTATATGACTGATTTGAATTCAAGATCCTCGTCACAATTT</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C---A-AT-----TT-TTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7eVGVb/sgn_ests_tomato_potato" ref_id="SGN-E391540" ref_strand="+" ref_description="SGN-E391540 [TUS-16-I1]">
      <seq>acgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0038A02-d5D42/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0038A02.1" temp_strand="+" temp_description="C07HBa0038A02.1  AC212612.1 htgs_phase:1 submitted_to_sgn_as:gi|158262108|gb|AC212612.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0038A02, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces">
        <position start="81442" stop="82718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81742" g_stop="82418" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0038A02.1" gen_strand="+" ref_id="SGN-E391540" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0038A02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81742" e_stop="82418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGGATCTTGAATTCAAATCAGTCATATAGTGTGGACAAATAAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTATGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGATACAAATAAATTATTATGCGATAGTATAACCATAAGATATCAAATACGATTTGTGCCTTAAGACATAAAGATTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATTTGGCAACATATGAAAA-CTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCCTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTCAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAACAAAAAGGATACAAAATAATGACCCTAATTGTCTTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTCACAGTGCACATACACTGAAAAGTTTTGATGCAATTTTATATGGATAAATTGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGAC</genome_strand>
        <mrna_strand>ACGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAA-GAAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7eVGVb/sgn_ests_tomato_potato" ref_id="SGN-E205808" ref_strand="+" ref_description="SGN-E205808 [cLEC-20-M21]">
      <seq>cgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0038A02-d5D42/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0038A02.1" temp_strand="+" temp_description="C07HBa0038A02.1  AC212612.1 htgs_phase:1 submitted_to_sgn_as:gi|158262108|gb|AC212612.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0038A02, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces">
        <position start="81443" stop="82596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81743" g_stop="82296" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0038A02.1" gen_strand="+" ref_id="SGN-E205808" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0038A02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81743" e_stop="82296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGATCTTGAATTCAAATCAGTCATATAGTGTGGACAAATAAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTATGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGATACAAATAAATTATTATGCGATAGTATAACCATAAGATATCAAATACGATTTGTGCCTTAAGACATAAAGATTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATTTGGCAACATATGAAAA-CTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCCTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTCAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAACAAAAAGGATACAAAATAATGACCCTAATTGTCTTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAG</genome_strand>
        <mrna_strand>CGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAA-GAAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7eVGVb/sgn_ests_tomato_potato" ref_id="SGN-E202657" ref_strand="+" ref_description="SGN-E202657 [cLEC-19-H1]">
      <seq>gatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttaaaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacgggttgcttcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgatttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0038A02-d5D42/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0038A02.1" temp_strand="+" temp_description="C07HBa0038A02.1  AC212612.1 htgs_phase:1 submitted_to_sgn_as:gi|158262108|gb|AC212612.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0038A02, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces">
        <position start="81447" stop="82499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81747" g_stop="82199" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0038A02.1" gen_strand="+" ref_id="SGN-E202657" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0038A02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81747" e_stop="82199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGAATTCAAATCAGTCATATAGTGTGGACAAATAAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTATGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGATACAAATAAATTATTATGCGATAGTATAACCATAAGATATCAAATACGATTTGTGCCTTAAGACATAAAGATTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATTTGGCAACATATGAAAA-CTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCCTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTCAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAAT</genome_strand>
        <mrna_strand>GATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAAAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGGTTGCTTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGATTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7eVGVb/sgn_ests_tomato_potato" ref_id="SGN-E267707" ref_strand="+" ref_description="SGN-E267707 [cLEI-12-K2]">
      <seq>ttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0038A02-d5D42/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0038A02.1" temp_strand="+" temp_description="C07HBa0038A02.1  AC212612.1 htgs_phase:1 submitted_to_sgn_as:gi|158262108|gb|AC212612.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0038A02, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces">
        <position start="81491" stop="82672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81791" g_stop="82372" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0038A02.1" gen_strand="+" ref_id="SGN-E267707" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0038A02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81791" e_stop="82372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACCAAGTAAAATGCACAATTCAAGTATATTATGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGATACAAATAAATTATTATGCGATAGTATAACCATAAGATATCAAATACGATTTGTGCCTTAAGACATAAAGATTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATTTGGCAACATATGAAAA-CTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCCTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTCAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAACAAAAAGGATACAAAATAATGACCCTAATTGTCTTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTCACAGTGCACATACACTGAAAAGTTTTGATGCAATTTTATATGGA</genome_strand>
        <mrna_strand>TTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAA-GAAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7eVGVb/sgn_ests_tomato_potato" ref_id="SGN-E289962" ref_strand="+" ref_description="SGN-E289962 [cLET-9-B10]">
      <seq>ttgaaagaaacttatccaataaagcttcaagaattcttatatggattgaaatagtcaaggaagaaaaatggtacaaaagaatgaccctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgccttgacctacagattgataatttgacaaatgaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatatgaataaatcgcattcattgagtaccccaatgattatgagattacttgacataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttactaacaatattattccagatatttgttttgcagtaaatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0038A02-d5D42/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0038A02.1" temp_strand="+" temp_description="C07HBa0038A02.1  AC212612.1 htgs_phase:1 submitted_to_sgn_as:gi|158262108|gb|AC212612.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0038A02, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces">
        <position start="81848" stop="82858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82148" g_stop="82558" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0038A02.1" gen_strand="+" ref_id="SGN-E289962" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0038A02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82148" e_stop="82558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAACAAAAAGGATACAAAATAATGACCCTAATTGTCTTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTCACAGTGCACATACACTGAAAAGTTTTGATGCAATTTTATATGGATAAATTGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAAGAGTTTCTTGGTGATGAAACTTTATATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTATTTTGCAGTTAATTTACT</genome_strand>
        <mrna_strand>TTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAATGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGCCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATATGAATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATTACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTA--TCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7eVGVb/sgn_ests_tomato_potato" ref_id="SGN-E354836" ref_strand="+" ref_description="SGN-E354836 [cTOS-19-H13]">
      <seq>cccaatactcatcccatattaacccgtggcaaagcggtatctttaaacccaaaacctttcaggctaccatacgaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatggtatgaatgacgagtttaaggctttgactgatcagaaaacttgggttcttgtacctaagccccatgggtggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcagatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaattaggagtatgggcttgattactccgagacattcattcctgttattcggcaggaaaccattctcctggtactgtcactcgtcgtgcgtaacattggctcatcaatcagttggatgtttcccatgcttttcttcatggtatgcttgatgaaactatctacatgacgcaaccaccgagctatgntgatccccattttccctcacatgttgcaaactccagaagtctctgtatgggctcaatcnagccccccgtgcttggtacacacgtctgaaaacattttccagggactcngcttcacgtngtgcgtacacgacacgggtctatttactcgacattcagcacacggtacagtcattctttctgnctatgnagatgatatcattattacatgctctactgcagctctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0038A02-d5D42/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0038A02.1" temp_strand="+" temp_description="C07HBa0038A02.1  AC212612.1 htgs_phase:1 submitted_to_sgn_as:gi|158262108|gb|AC212612.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0038A02, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces">
        <position start="87055" stop="88377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87355" g_stop="88077" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0038A02.1" gen_strand="+" ref_id="SGN-E354836" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0038A02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87355" e_stop="88077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATACTCATCCCATGTTAACCCGTGGCAAAACCAGTATCTTTAAACCTAAAACCTTTCAGGCTACCATACTATCAAATATACCCCTTCCCGATAGTGAACCAACAACCTACTATGTTGCCTCAAAAAATTCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTTCAGGTACAAGGCTCGTTTGGTTGCTGAAAGCTACAATCAGGAGTATGAGCTTGATTACTCCGACACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGTGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAAT-CTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGATGCAACCACCGGGCTATGTTGATCCCC-TCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACACATCTGAAAACGTTCCTCCAAGGACACGGCTTCACGTGTTGCGTACACGACACGAGTCTGTTTACTCGACATT-AGCACACGGTACAGTCATTCTTCTTGTCTATGTAGATGATGTCATTATTACAGGCTCTACTGCAGCTCTCAT</genome_strand>
        <mrna_strand>CCCAATACTCATCCCATATTAACCCGTGGC-AAAGCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACGACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGGTATGAATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGTGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATTAGGAGTATGGGCTTGATTACTCCGAGACATTCATTCCTGTTATTCGGCAGGAAACCATTCTCCTGGTACTGTCACTCGTCGTGCGTAAC-ATTGGCTCATCAATCAGTTGGATGTTTCCCATGCTTTTCTTCATGGTATGCTTGATGAAACTATCTACATGACGCAACCACCGAGCTATGNTGATCCCCATTTTCCCTC-ACATG-TTGCAAACTCCAGAAGTCTCTGTATGGGCTCAATCNAGCCCCCCGTGCTTGGTACACACGTCTGAAAACATT-TTCCAGGGACTCNGCTTCACGTNGTGCGTACACGACACGGGTCTATTTACTCGACATTCAGCACACGGTACAGTCATTCTTTCTGNCTATGNAGATGATATCATTATTACATGCTCTACTGCAGCTCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-7eVGVb/sgn_ests_tomato_potato" ref_id="SGN-E245978" ref_strand="+" ref_description="SGN-E245978 [cLEF-51-O12]">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0038A02-d5D42/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0038A02.1" temp_strand="+" temp_description="C07HBa0038A02.1  AC212612.1 htgs_phase:1 submitted_to_sgn_as:gi|158262108|gb|AC212612.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0038A02, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces">
        <position start="87347" stop="88246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87647" g_stop="87946" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0038A02.1" gen_strand="+" ref_id="SGN-E245978" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0038A02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87647" e_stop="87946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTGAAAGCTACAATCAGGAGTATGAGCTTGATTACTCCGACACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGTGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAAT-CTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGATGCAACCACCGGGCTATGTTGATCCCCTCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACACATCTGAAAACGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>12</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9292" PGL_stop="9514"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9292" e_stop="9514"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="9292" e_stop="9514" e_length="223"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9292" stop="9514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390866" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCACTACTGCCTCCCCAGTGTTTTGCCTTTACAATGAGGTTCTAGAATCTATGCCCATAATGTTTTTGATATATCTGTAGTCGCTAATATCAAACTTTGTATGAAGAATGCTTTGTGGAAATAAGAATTTCTTGCTTTAGAA</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  S  L  L  P  P  Q  C  F  A  F  T  M  R  F  *  N  L  C  P  *  C  F  *  Y  I  C  S  R  *  Y  Q  T  L  Y  E  E  C  F  V  E  I  R  I  S  C  F  R  </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  Y  H  Y  C  L  P  S  V  L  P  L  Q  *  G  S  R  I  Y  A  H  N  V  F  D  I  S  V  V  A  N  I  K  L  C  M  K  N  A  L  W  K  *  E  F  L  A  L  E </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  I  T  T  A  S  P  V  F  C  L  Y  N  E  V  L  E  S  M  P  I  M  F  L  I  Y  L  *  S  L  I  S  N  F  V  *  R  M  L  C  G  N  K  N  F  L  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0038A02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="29121" PGL_stop="28274"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29121" e_stop="28274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="29121" e_stop="28274" e_length="848"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29121" stop="28607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28987" stop="28274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGCGACGGATCGTCATGGTCACGACGGACCGTCATGCACTTCGTCGTCCTATACTTATGAAATTTCTTTTACTGCTCTTCTTCATTACCCTTGACGACAAGTATGAAGGACCGTCATAGACACAACGATCCGTTGAGGGCCTTTGTTCCAAAACACTTCAACTCTTGGAATATGGGTACTGGAATTACTTCTCCGAACATCATGACAAACCTGCAGACGGACCGTCATAAACACGACGGACCGTCACAAGCTTCGTAACCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACTGTCACAAGCACGACGGATCGTCATAAGCTCCATAAGTGGTCTCTTCTGCATTTCTTCGCTTAAAATCTCCGCAATCAGCTTTGGACATATTTCCTGCAAAATAAAAAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAACCTTAAGGAAAAAGTATTAGTAATACCGTGAAACCACGGTATATCAACACCCTCAACTTTAATTCGTTTTTTGTCCTCAAGCGACGCACTATGACTCAATACACAATCTTTGTACGATAGTATCGATATTTCTTCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGCTTGATATATGTGGGATCAGAACATGACACAGACTCGCCATGCACTAACACATATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCCAGCATTGCAACTAGTGTCCTCGCTTTTAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</gDNA_template>
            <first_frame> L  R  R  I  V  M  V  T  T  D  R  H  A  L  R  R  P  I  L  M  K  F  L  L  L  L  F  F  I  T  L  D  D  K  Y  E  G  P  S  *  T  Q  R  S  V  E  G  L  C  S  K  T  L  Q  L  L  E  Y  G  Y  W  N  Y  F  S  E  H  H  D  K  P  A  D  G  P  S  *  T  R  R  T  V  T  S  F  V  T  P  H  L  V  R  L  P  H  L  P  S  A  A  A  L  R  C  H  L  R  T  V  T  S  T  T  D  R  H  K  L  H  K  W  S  L  L  H  F  F  A  *  N  L  R  N  Q  L  W  T  Y  F  L  Q  N  K  K  K  L  I  *  K  L  A  Q  K  G  F  W  T  H  *  P  *  G  K  S  I  S  N  T  V  K  P  R  Y  I  N  T  L  N  F  N  S  F  F  V  L  K  R  R  T  M  T  Q  Y  T  I  F  V  R  *  Y  R  Y  F  F  L  C  N  H  L  A  I  N  P  D  *  S  H  Q  I  Y  A  C  Y  H  Y  *  A  *  Y  M  W  D  Q  N  M  T  Q  T  R  H  A  L  T  H  I  L  F  N  F  S  P  R  C  *  Q  F  Q  H  C  N  *  C  P  R  F  *  Q  N  P  H  F  S  H  N  D  F  S  L  S  I  R  I   </first_frame>
            <second_frame>  C  D  G  S  S  W  S  R  R  T  V  M  H  F  V  V  L  Y  L  *  N  F  F  Y  C  S  S  S  L  P  L  T  T  S  M  K  D  R  H  R  H  N  D  P  L  R  A  F  V  P  K  H  F  N  S  W  N  M  G  T  G  I  T  S  P  N  I  M  T  N  L  Q  T  D  R  H  K  H  D  G  P  S  Q  A  S  *  P  H  T  W  S  D  F  P  I  F  L  Q  Q  L  H  Y  A  A  T  Y  G  L  S  Q  A  R  R  I  V  I  S  S  I  S  G  L  F  C  I  S  S  L  K  I  S  A  I  S  F  G  H  I  S  C  K  I  K  R  N  L  Y  K  N  *  H  K  K  A  F  G  H  T  N  L  K  E  K  V  L  V  I  P  *  N  H  G  I  S  T  P  S  T  L  I  R  F  L  S  S  S  D  A  L  *  L  N  T  Q  S  L  Y  D  S  I  D  I  S  S  F  A  I  I  W  L  S  I  P  I  N  L  I  K  S  M  H  A  I  T  I  R  L  D  I  C  G  I  R  T  *  H  R  L  A  M  H  *  H  I  S  S  S  I  S  H  R  G  A  N  N  S  S  I  A  T  S  V  L  A  F  N  K  I  L  I  F  H  T  M  I  S  V  *  V  *  G  L  </second_frame>
            <third_frame>   A  T  D  R  H  G  H  D  G  P  S  C  T  S  S  S  Y  T  Y  E  I  S  F  T  A  L  L  H  Y  P  *  R  Q  V  *  R  T  V  I  D  T  T  I  R  *  G  P  L  F  Q  N  T  S  T  L  G  I  W  V  L  E  L  L  L  R  T  S  *  Q  T  C  R  R  T  V  I  N  T  T  D  R  H  K  L  R  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  C  T  T  L  P  P  T  D  C  H  K  H  D  G  S  S  *  A  P  *  V  V  S  S  A  F  L  R  L  K  S  P  Q  S  A  L  D  I  F  P  A  K  *  K  E  T  Y  I  K  I  S  T  K  R  L  L  D  T  L  T  L  R  K  K  Y  *  *  Y  R  E  T  T  V  Y  Q  H  P  Q  L  *  F  V  F  C  P  Q  A  T  H  Y  D  S  I  H  N  L  C  T  I  V  S  I  F  L  P  L  Q  S  F  G  Y  Q  S  R  L  I  S  S  N  L  C  M  L  S  L  L  G  L  I  Y  V  G  S  E  H  D  T  D  S  P  C  T  N  T  Y  P  L  Q  F  L  T  E  V  L  T  I  P  A  L  Q  L  V  S  S  L  L  T  K  S  S  F  F  T  Q  *  F  Q  F  E  Y  K  D  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0038A02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28582" stop="28298"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVFCPQATHYDSIHNLCTIVSIFLPLQSFGYQSRLISSNLCMLSLLGLIYVGSEHDTDSPCTNTYPLQFLTEVLTIPALQLVSSLLTKSSFFTQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0038A02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29060" stop="28863"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFFYCSSSLPLTTSMKDRHRHNDPLRAFVPKHFNSWNMGTGITSPNIMTNLQTDRHKHDGPSQAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="68919" PGL_stop="68332"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68919" e_stop="68332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="68919" e_stop="68332" e_length="588"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68919" stop="68332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGCGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAGCTTTGTTATTCCGGGAGATTTTCTCTAATTTTTCGGCAATTTCAGCATAAGGACATTCCCCATAAGATCCACCTGCTATAGTGTCCAACACCGCTTTGTTATTATCATCCTGTCCCCGATAGAACTATTCCTTCAGTGACTCATCATCTATACGATGATTTGGAACACTTCTCAAGAATGAGGTGAATCTATCCCAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTATTCACTGTCTTTGTGGTTTAGTTTCTTGGAGATCGGATAGTAGAGTGCTAAGAAGACATCCCTTAGTTGGTTCCAAGTGAAGATTGAGTTGTATGGGAGCTCAGTGAAGCACATAGCAGCCTCTCCCGTCAGTGAGAGAGGAAACACTCAGAGACTTATTACATCTAAATCCAAATCAGGCCTCCCTACACAACTTTTACACACTGCCCTTACCTTAGCTATATGGGCATGTGGATACTCAGAAGGTATCCCTGAAAACAAACCTCTGGTAGTGAGCATTTGCATCAGGCTACTAGTTACCACAGA</gDNA_template>
            <first_frame> T  A  K  V  F  L  P  V  S  D  F  L  V  L  Q  A  L  L  F  R  E  I  F  S  N  F  S  A  I  S  A  *  G  H  S  P  *  D  P  P  A  I  V  S  N  T  A  L  L  L  S  S  C  P  R  *  N  Y  S  F  S  D  S  S  S  I  R  *  F  G  T  L  L  K  N  E  V  N  L  S  Q  E  L  L  T  D  S  P  G  S  A  T  K  L  F  T  V  F  V  V  *  F  L  G  D  R  I  V  E  C  *  E  D  I  P  *  L  V  P  S  E  D  *  V  V  W  E  L  S  E  A  H  S  S  L  S  R  Q  *  E  R  K  H  S  E  T  Y  Y  I  *  I  Q  I  R  P  P  Y  T  T  F  T  H  C  P  Y  L  S  Y  M  G  M  W  I  L  R  R  Y  P  *  K  Q  T  S  G  S  E  H  L  H  Q  A  T  S  Y  H  R </first_frame>
            <second_frame>  L  R  R  C  F  S  L  Y  Q  T  S  *  Y  S  K  L  C  Y  S  G  R  F  S  L  I  F  R  Q  F  Q  H  K  D  I  P  H  K  I  H  L  L  *  C  P  T  P  L  C  Y  Y  H  P  V  P  D  R  T  I  P  S  V  T  H  H  L  Y  D  D  L  E  H  F  S  R  M  R  *  I  Y  P  K  N  Y  *  L  T  L  L  V  V  P  Q  S  Y  S  L  S  L  W  F  S  F  L  E  I  G  *  *  S  A  K  K  T  S  L  S  W  F  Q  V  K  I  E  L  Y  G  S  S  V  K  H  I  A  A  S  P  V  S  E  R  G  N  T  Q  R  L  I  T  S  K  S  K  S  G  L  P  T  Q  L  L  H  T  A  L  T  L  A  I  W  A  C  G  Y  S  E  G  I  P  E  N  K  P  L  V  V  S  I  C  I  R  L  L  V  T  T   </second_frame>
            <third_frame>   C  E  G  V  S  P  C  I  R  L  P  S  T  P  S  F  V  I  P  G  D  F  L  *  F  F  G  N  F  S  I  R  T  F  P  I  R  S  T  C  Y  S  V  Q  H  R  F  V  I  I  I  L  S  P  I  E  L  F  L  Q  *  L  I  I  Y  T  M  I  W  N  T  S  Q  E  *  G  E  S  I  P  R  T  T  N  *  L  S  W  *  C  H  K  V  I  H  C  L  C  G  L  V  S  W  R  S  D  S  R  V  L  R  R  H  P  L  V  G  S  K  *  R  L  S  C  M  G  A  Q  *  S  T  *  Q  P  L  P  S  V  R  E  E  T  L  R  D  L  L  H  L  N  P  N  Q  A  S  L  H  N  F  Y  T  L  P  L  P  *  L  Y  G  H  V  D  T  Q  K  V  S  L  K  T  N  L  W  *  *  A  F  A  S  G  Y  *  L  P  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0038A02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68594" stop="68334"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAKKTSLSWFQVKIELYGSSVKHIAASPVSERGNTQRLITSKSKSGLPTQLLHTALTLAIWACGYSEGIPENKPLVVSICIRLLVTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="82135" PGL_stop="81734"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82135" e_stop="81734"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="82135" e_stop="81734" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82135" stop="81734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGACACCTCGATTGTTTCAGGGATTTTCATATAACCTTCATTGTCTAGCTAGACATTACAATTATTCATTACATGCATTCAAGTTTTCATATGTTGCCAAATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAATCTTTATGTCTTAAGGCACAAATCGTATTTGATATCTTATGGTTATACTATCGCATAATAATTTATTTGTATCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACATAATATACTTGAATTGTGCATTTTACTTGGTCAACCATTTATTTGTCCACACTATATGACTGATTTGAATTCAAGATCCTCGTCACAATTT</gDNA_template>
            <first_frame> F  R  H  L  D  C  F  R  D  F  H  I  T  F  I  V  *  L  D  I  T  I  I  H  Y  M  H  S  S  F  H  M  L  P  N  Q  N  K  P  H  C  I  H  Q  R  R  K  H  L  Q  *  C  Q  D  F  C  D  K  S  L  C  L  K  A  Q  I  V  F  D  I  L  W  L  Y  Y  R  I  I  I  Y  L  Y  P  T  D  I  I  P  *  F  M  D  Y  Q  S  K  M  S  L  F  *  V  K  H  N  I  L  E  L  C  I  L  L  G  Q  P  F  I  C  P  H  Y  M  T  D  L  N  S  R  S  S  S  Q  F </first_frame>
            <second_frame>  S  D  T  S  I  V  S  G  I  F  I  *  P  S  L  S  S  *  T  L  Q  L  F  I  T  C  I  Q  V  F  I  C  C  Q  I  K  T  N  L  I  A  S  T  K  G  E  N  I  S  N  N  V  R  I  F  A  I  N  L  Y  V  L  R  H  K  S  Y  L  I  S  Y  G  Y  T  I  A  *  *  F  I  C  I  P  L  T  L  Y  L  D  L  W  T  T  S  P  K  C  H  F  S  K  *  N  I  I  Y  L  N  C  A  F  Y  L  V  N  H  L  F  V  H  T  I  *  L  I  *  I  Q  D  P  R  H  N   </second_frame>
            <third_frame>   Q  T  P  R  L  F  Q  G  F  S  Y  N  L  H  C  L  A  R  H  Y  N  Y  S  L  H  A  F  K  F  S  Y  V  A  K  S  K  Q  T  S  L  H  P  P  K  E  K  T  S  P  I  M  S  G  F  L  R  *  I  F  M  S  *  G  T  N  R  I  *  Y  L  M  V  I  L  S  H  N  N  L  F  V  S  H  *  H  Y  T  L  I  Y  G  L  P  V  Q  N  V  T  F  L  S  E  T  *  Y  T  *  I  V  H  F  T  W  S  T  I  Y  L  S  T  L  Y  D  *  F  E  F  K  I  L  V  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0038A02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="81742" PGL_stop="82558"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81742" e_stop="82558"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="81742" e_stop="82558" e_length="817"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81742" stop="82418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81743" stop="82296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81747" stop="82199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81791" stop="82372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82148" stop="82558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289962" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGAGGATCTTGAATTCAAATCAGTCATATAGTGTGGACAAATAAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTATGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGATACAAATAAATTATTATGCGATAGTATAACCATAAGATATCAAATACGATTTGTGCCTTAAGACATAAAGATTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATTTGGCAACATATGAAAACTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCCTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTCAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAACAAAAAGGATACAAAATAATGACCCTAATTGTCTTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTCACAGTGCACATACACTGAAAAGTTTTGATGCAATTTTATATGGATAAATTGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAAGAGTTTCTTGGTGATGAAACTTTATATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTATTTTGCAGTTAATTTACT</gDNA_template>
            <first_frame> T  R  I  L  N  S  N  Q  S  Y  S  V  D  K  *  M  V  D  Q  V  K  C  T  I  Q  V  Y  Y  V  S  L  R  K  V  T  F  W  T  G  S  P  *  I  K  V  *  C  Q  W  D  T  N  K  L  L  C  D  S  I  T  I  R  Y  Q  I  R  F  V  P  *  D  I  K  I  Y  R  K  N  P  D  I  I  G  D  V  F  S  F  G  G  C  N  E  V  C  F  D  L  A  T  Y  E  N  L  N  A  C  N  E  *  L  *  C  L  A  R  Q  *  R  L  Y  E  N  P  *  N  N  R  G  V  *  S  I  *  E  F  Q  R  N  F  F  N  K  A  S  R  I  L  I  W  I  E  I  V  K  E  Q  K  G  Y  K  I  M  T  L  I  V  F  V  F  L  *  K  G  L  G  K  T  K  F  C  L  D  L  Q  I  D  N  L  T  N  E  I  F  V  S  Q  C  T  Y  T  E  K  F  *  C  N  F  I  W  I  N  C  I  H  *  V  P  Q  *  L  *  D  H  L  T  *  M  M  I  Q  F  D  L  K  R  R  M  K  S  F  L  V  M  K  L  Y  I  L  V  Q  S  G  H  *  C  I  L  L  T  I  F  D  Q  I  F  I  L  Q  L  I  Y  </first_frame>
            <second_frame>  R  G  S  *  I  Q  I  S  H  I  V  W  T  N  K  W  L  T  K  *  N  A  Q  F  K  Y  I  M  F  H  L  E  K  *  H  F  G  L  V  V  H  K  S  R  Y  N  V  S  G  I  Q  I  N  Y  Y  A  I  V  *  P  *  D  I  K  Y  D  L  C  L  K  T  *  R  F  I  A  K  I  L  T  L  L  E  M  F  S  P  L  V  D  A  M  R  F  V  L  I  W  Q  H  M  K  T  *  M  H  V  M  N  N  C  N  V  *  L  D  N  E  G  Y  M  K  I  P  E  T  I  E  V  S  E  A  Y  K  S  F  K  E  T  F  S  I  K  L  Q  E  S  L  Y  G  L  K  *  S  R  N  K  K  D  T  K  *  *  P  *  L  S  L  Y  F  Y  E  K  V  L  V  R  Q  N  F  V  L  T  Y  R  L  I  I  *  Q  M  K  Y  L  S  H  S  A  H  T  L  K  S  F  D  A  I  L  Y  G  *  I  A  F  I  E  Y  P  N  D  Y  E  I  T  *  H  K  *  *  F  S  L  I  S  K  E  G  *  R  V  S  W  *  *  N  F  I  S  W  C  N  Q  G  T  S  A  S  Y  *  Q  Y  L  T  R  Y  L  F  C  S  *  F  T </second_frame>
            <third_frame>   E  D  L  E  F  K  S  V  I  *  C  G  Q  I  N  G  *  P  S  K  M  H  N  S  S  I  L  C  F  T  *  K  S  D  I  L  D  W  *  S  I  N  Q  G  I  M  S  V  G  Y  K  *  I  I  M  R  *  Y  N  H  K  I  S  N  T  I  C  A  L  R  H  K  D  L  S  Q  K  S  *  H  Y  W  R  C  F  L  L  W  W  M  Q  *  G  L  F  *  F  G  N  I  *  K  L  E  C  M  *  *  I  I  V  M  S  S  *  T  M  K  V  I  *  K  S  L  K  Q  S  R  C  L  K  H  I  R  V  S  K  K  L  F  Q  *  S  F  K  N  P  Y  M  D  *  N  S  Q  G  T  K  R  I  Q  N  N  D  P  N  C  L  C  I  F  M  K  R  S  W  *  D  K  I  L  S  *  P  T  D  *  *  F  D  K  *  N  I  C  L  T  V  H  I  H  *  K  V  L  M  Q  F  Y  M  D  K  L  H  S  L  S  T  P  M  I  M  R  S  L  D  I  N  D  D  S  V  *  S  Q  K  K  D  E  E  F  L  G  D  E  T  L  Y  L  G  A  I  R  A  L  V  H  L  T  N  N  I  *  P  D  I  Y  F  A  V  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0038A02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="87355" PGL_stop="88077"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87355" e_stop="88077"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="87355" e_stop="88077" e_length="723"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87355" stop="88077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87647" stop="87946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCAATACTCATCCCATGTTAACCCGTGGCAAAACCAGTATCTTTAAACCTAAAACCTTTCAGGCTACCATACTATCAAATATACCCCTTCCCGATAGTGAACCAACAACCTACTATGTTGCCTCAAAAAATTCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTTCAGGTACAAGGCTCGTTTGGTTGCTGAAAGCTACAATCAGGAGTATGAGCTTGATTACTCCGACACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGTGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGATGCAACCACCGGGCTATGTTGATCCCCTCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACACATCTGAAAACGTTCCTCCAAGGACACGGCTTCACGTGTTGCGTACACGACACGAGTCTGTTTACTCGACATTAGCACACGGTACAGTCATTCTTCTTGTCTATGTAGATGATGTCATTATTACAGGCTCTACTGCAGCTCTCAT</gDNA_template>
            <first_frame> P  N  T  H  P  M  L  T  R  G  K  T  S  I  F  K  P  K  T  F  Q  A  T  I  L  S  N  I  P  L  P  D  S  E  P  T  T  Y  Y  V  A  S  K  N  S  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  D  Q  K  T  W  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  D  G  S  I  F  R  Y  K  A  R  L  V  A  E  S  Y  N  Q  E  Y  E  L  D  Y  S  D  T  F  S  P  V  I  R  Q  E  T  I  R  L  V  L  S  L  A  V  C  N  N  W  L  I  N  Q  L  D  V  S  N  L  F  F  M  A  C  L  M  K  L  S  T  *  C  N  H  R  A  M  L  I  P  S  S  L  N  M  F  A  N  S  R  S  L  C  M  G  S  S  K  P  P  V  L  G  T  H  I  *  K  R  S  S  K  D  T  A  S  R  V  A  Y  T  T  R  V  C  L  L  D  I  S  T  R  Y  S  H  S  S  C  L  C  R  *  C  H  Y  Y  R  L  Y  C  S  S  H </first_frame>
            <second_frame>  P  I  L  I  P  C  *  P  V  A  K  P  V  S  L  N  L  K  P  F  R  L  P  Y  Y  Q  I  Y  P  F  P  I  V  N  Q  Q  P  T  M  L  P  Q  K  I  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  I  R  K  L  G  F  L  Y  L  S  P  M  G  G  T  Q  W  A  V  N  G  C  T  K  L  N  T  M  Q  M  A  V  F  S  G  T  R  L  V  W  L  L  K  A  T  I  R  S  M  S  L  I  T  P  T  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  C  H  S  P  C  A  T  I  G  S  S  I  S  W  M  F  P  I  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P  L  P  S  T  C  L  Q  T  P  E  V  S  V  W  A  Q  A  S  P  P  C  L  V  H  T  S  E  N  V  P  P  R  T  R  L  H  V  L  R  T  R  H  E  S  V  Y  S  T  L  A  H  G  T  V  I  L  L  V  Y  V  D  D  V  I  I  T  G  S  T  A  A  L   </second_frame>
            <third_frame>   Q  Y  S  S  H  V  N  P  W  Q  N  Q  Y  L  *  T  *  N  L  S  G  Y  H  T  I  K  Y  T  P  S  R  *  *  T  N  N  L  L  C  C  L  K  K  F  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  R  W  Q  Y  F  Q  V  Q  G  S  F  G  C  *  K  L  Q  S  G  V  *  A  *  L  L  R  H  I  Q  S  C  Y  S  A  G  N  H  S  P  G  T  V  T  R  R  V  Q  Q  L  A  H  Q  S  V  G  C  F  Q  S  F  L  H  G  M  L  D  E  T  I  Y  M  M  Q  P  P  G  Y  V  D  P  L  F  P  Q  H  V  C  K  L  Q  K  S  L  Y  G  L  K  Q  A  P  R  A  W  Y  T  H  L  K  T  F  L  Q  G  H  G  F  T  C  C  V  H  D  T  S  L  F  T  R  H  *  H  T  V  Q  S  F  F  L  S  M  *  M  M  S  L  L  Q  A  L  L  Q  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0038A02.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87355" stop="87831"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNTHPMLTRGKTSIFKPKTFQATILSNIPLPDSEPTTYYVASKNSYWRHAMDDEFKALTDQKTWVLVPKPHGRHPVGCKWVYKIKHNADGSIFRYKARLVAESYNQEYELDYSDTFSPVIRQETIRLVLSLAVCNNWLINQLDVSNLFFMACLMKLST*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0038A02.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87854" stop="88075"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPLPSTCLQTPEVSVWAQASPPCLVHTSENVPPRTRLHVLRTRHESVYSTLAHGTVILLVYVDDVIITGSTAAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 113 chains have been computed
$ 
$ memory statistics:
$ 26016 bytes spliced alignments in total
$ 12 spliced alignments have been stored
$ 2168 bytes was the average size of a spliced alignment
$ 11408 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1901 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 142 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-07 02:53:03
-->
