<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-17 23:35:36"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0041L08-XAY7n/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-CVfEXi/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CVfEXi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346040" ref_strand="-" ref_description="SGN-U346040        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | lecithin:cholesterol acyltransferase family protein / LACT family protein, similar to SP:P40345 Phospholipid:diacylglycerol acyltransferase (EC 2.3.1.158) (PDAT) {Saccharomyces cerevisiae}; contains Pfam profile PF02450: Lecithin:cholesterol acyltransferase (phosphatidylcholine-sterol acyltransferase) | chr5:4393065-4397544 FORWARD | Aliases: T6I14.2(evalue: 1e-46, score=173) genbank/nr: gi|37785695|gb|AAP47635.1| putative lecithine cholesterol acyltransferase [Medicago truncatula](evalue: 1e-47, score=177)">
      <seq>agtacaatcacgcccctccatctaatcttttagagggaaggggaactcaaagtggtgcacacgtcgatatattgggaaattttgcacttattgaagatatcattagagtagctgctgtggctactggagaagccctgggaggagatcaattatactcgggtattttcaagtggtctgaaaggattaaactgaagctttagatttcaaatgaatttcatgggtgcaatcaattggtttgaggaacgggtggtgctctactatacgtcttgcttctagtctcctggctgaaacatctgccgtatacttgaaacaataatactctgggaaacctgaagctgcaaatgtcgcaggaagcatggatgtataggtaaattttggacataacattgattttttgcctgtaattatatgatccttgatagcatagtgtagtctgtagacctaatattggagcacaagtactgcatttatatgttcaattattacacagctcacaaggagggacagagtgtatttctatcgtgggttatttgaaatttataagtaaatatttactcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0041L08-XAY7n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0041L08.1" temp_strand="-" temp_description="C07HBa0041L08.1  AC210352.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0041L08 upload_account_name:france">
        <position start="7064" stop="5826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6764" g_stop="6555" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6554" i_stop="6475" i_length="80">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6474" g_stop="6129" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="557" r_length="347" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="558" polyA_stop="567"/>
      <MATCH_line gen_id="C07HBa0041L08.1" gen_strand="-" ref_id="SGN-U346040" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0041L08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346040" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6764" e_stop="6555"/>
          <exon e_start="6474" e_stop="6129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACAATCACGCCCCTCCAGCTAATCTTTTAGAGGGAAGGGGAACGCAAAGTGGTGCACACGTTGATATAATGGGAAATTTTGCACTTATTGAAGATATCATTAGAGTAGCTGCTGGGGCTACTGGAGAAGACCTGGGAGGAGATCAATTATACTCGGGTATTTTCAAGTGGTCTGAAAGGATTAAACTGAAGCTTTAGATTTCAAATGGTGAGATTTACGCCATTTCTTTCTTACAAGCTTTAGATTGGTGCTATATGTTTCTTAGATAGCTGCTTTTGTATCTGCAGAATTTCATGGGTGCAATCAATTGGTTTGAGGAACTGGTGGTGCTCTACTATACGTCTTGCTTCTCGTCTCCTGGCTGAAACATCTGCTGTATACTTGAAACAATAATACTCTGGGAAACCTGAAGCTGCAAATGTCGCAGGAAGCATGGATGTATAGGTAAATTTTGGACATAACATTGATTTTTTGCCTGTAATTATATGATCCTTGATAGCATAGTGTAGTCTGTAGACCTAATATTGGAGCACAAGTACTGCATTTATATGTTCAATTATTACACAGCACACAAGGAGGGACA-AGTGTATTTCTATCGTGGGTTATTTGAAATTTATAAGTAAATATTTACTC</genome_strand>
        <mrna_strand>AGTACAATCACGCCCCTCCATCTAATCTTTTAGAGGGAAGGGGAACTCAAAGTGGTGCACACGTCGATATATTGGGAAATTTTGCACTTATTGAAGATATCATTAGAGTAGCTGCTGTGGCTACTGGAGAAGCCCTGGGAGGAGATCAATTATACTCGGGTATTTTCAAGTGGTCTGAAAGGATTAAACTGAAGCTTTAGATTTCAAATG................................................................................AATTTCATGGGTGCAATCAATTGGTTTGAGGAACGGGTGGTGCTCTACTATACGTCTTGCTTCTAGTCTCCTGGCTGAAACATCTGCCGTATACTTGAAACAATAATACTCTGGGAAACCTGAAGCTGCAAATGTCGCAGGAAGCATGGATGTATAGGTAAATTTTGGACATAACATTGATTTTTTGCCTGTAATTATATGATCCTTGATAGCATAGTGTAGTCTGTAGACCTAATATTGGAGCACAAGTACTGCATTTATATGTTCAATTATTACACAGCTCACAAGGAGGGACAGAGTGTATTTCTATCGTGGGTTATTTGAAATTTATAAGTAAATATTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CVfEXi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U338184" ref_strand="+" ref_description="SGN-U338184        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | lecithin:cholesterol acyltransferase family protein / LACT family protein, similar to SP:P40345 Phospholipid:diacylglycerol acyltransferase (EC 2.3.1.158) (PDAT) {Saccharomyces cerevisiae}; contains Pfam profile PF02450: Lecithin:cholesterol acyltransferase (phosphatidylcholine-sterol acyltransferase) | chr5:4393065-4397544 FORWARD | Aliases: T6I14.2(evalue: 9e-82, score=300) genbank/nr: gi|51536137|dbj|BAD38311.1| putative lecithin diacylglycerol cholesterol acyltransferase [Oryza sativa (japonica cultivar-group)] >gi|51536015|dbj|BAD38095.1| putative lecithin diacylglycerol cholesterol acyltransferase [Oryza sativa (japonica cultivar-group)] (evalue: 9e-87, score=322)">
      <seq>aggaccagaaagtcggctaatgctactcgtgtgaagtatggaagattaatatcatttgggaagcatgtagctaatttgcactcatcagagattgagaggattgacttcagagatgctcttaaaggtaaaagtcatgccaattccacttgccgtgatgtgtggactgagtaccatgatatgggtattggaggtgtcaaagctgttgcagattacaaagtttacacagctggatctgttttggatcttcttcattttgttgcaccaaagttgatgaagcgtggtagtgctcatttttcatatggaattgctgatgatctggatgacaaaaaatacgaacactacaaatattggtcaaatcccctggaaacaaaattgcccaatgcaccagggatggaaatcttctcaatgtatggagttggaatcccaactgaaagagcctatgtatacaaactaagtcctggtggagattgctatattcctttccagatagatacttcggctgaaggtggaagtgaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0041L08-XAY7n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0041L08.1" temp_strand="-" temp_description="C07HBa0041L08.1  AC210352.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0041L08 upload_account_name:france">
        <position start="9648" stop="6601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9348" g_stop="9238" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9237" i_stop="7677" i_length="1561">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7676" g_stop="7417" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="371" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7416" i_stop="7049" i_length="368">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7048" g_stop="6901" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="519" r_length="148" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0041L08.1" gen_strand="-" ref_id="SGN-U338184" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0041L08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9348" e_stop="9238"/>
          <exon e_start="7676" e_stop="7417"/>
          <exon e_start="7048" e_stop="6901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACCAGAAAGTCGGCTAATGCTACTCGTGTGAAGTATGGAAGATTAATATCATTTGGGAAGCATGTAGCTAATTTGCACTCATCAGAGATTGAGAGGATTGACTTCAGAGTAATGTTCTTACTTTAATTTTGGATTTTAACTAACTACTATCTCTAGGGTAAAAACTTACTTGAACGTTCACGTTCCTAAATAACATTATGACCCATTAACAAAAGTGTGGAAAGATGCTTAGACCTAAATCCTGACATGCCGACCCAAAAAAAAAGGTACCAACAGGCTGTCACAAATTTGTTAAATATACAAATAATCTTTTTTGCATCAGCTTCCCCAATGAATATGCATCCTTTGCTCTACTTTCTAATGTAGAGGATGGGAAAGGCCTGGTGAGATGAGACACAACTGGAATAAGAAGAGAACATTTTCTCTTTCATACAAGTTTGAAGTTGGATGTAATACCTTATCCCCCCTCAAAAAAAAAAAAAAAAAGAAGTTGGAATTCCTCTAATCCTAAGTAAAACTTTCAAGTATCTCTGAGTTCTTTCAAGTTAATGTGGAATTTCTGTATCGAGTTCCATTGTTTTATATGAATCCTCTCCTGCAGACTGGTGTGTTCTGCATCTCTGCACATTTCTAAGAAATAAACACGTGAACTTTTTTTACTATTGCCTATTCAGAGTCTTTTTCTTCTTTGACGTGTCCAATATCCACTAAAGCTCAAAATCTCCCCTAATTAATGATCAAGTAGCCAAAGCAGCAATAGAACAGCTATTACTATGGGCTAATGAATGCCTCGAGTATTCTTGCATCAGTCTTATAAATGATTGCATGGATCATTTTTCACTCCTTTGATAAGGTCGTACAATTTCCAATCCAAAGGGAAAAATCAGACAAAGAAGTCAATAGCTCTTTACAATGTGTAAAAGCAGATTTTAAAGTACTACCAATGGTTAGTTATCAAATTGATGCCATATTTTTGTAATTTGAGATCCATTGACTAGTGGAGTTCATTTCTGAAGTCTATGAGTTATCAGATAAGACATTTGGGGTAGTGCATTTTTTCTTTTTCTTATTAGGACATTTCCTAGTAGTCTCTCACTGGTGGATGACATATTGTTGTGCTTGGTGCTGCTATACGGAGATCAGGATAGTCATTTGTCTTTCAGAGTGAAATTGTTGATTTGATCAGCTTTCAGAAAACATAAGCAATTAAACCAGTCATTAGAGTAACTTACATGTTAAGTGCACTGCTATCTTTCACAAGGAAAAACTCTCTGCTGTCACTGTGTCCAAATAAGGGGAAAATGCAGAAATTATTTGGCAAATCCTGTTGCAGATTAAAGTGGTTTTAATACATAATGCATCCTGAACCTGAAGAGGCTAGAATTGCACATGGTATTGCAAATTACCATGAATTAACAGTTATTCCAATACTAACATTAAAAGGAAACATTATTCCAATAGTCCATCCCGTTTTGAGGTACTCTACTATCTCCAAATCAGTTTCTCATGTTTCAATATACGCTTAATGACTTATACTAGTTTGTTTGTGTCTACTACTGCTTGCTTAAACTTCCACATGGATAGGTTATCTGAAACAACTCCAGATGTTGCATTTTTACTTTCTGGTTTTAGTTCTAACTTGCCCTCTCCATTGTTCGGTCCTCCCCAGGATGCTCTTAAAGGTAAAAGTCATGCCAATTCCACTTGCCGTGATGTGTGGACTGAGTACCATGATATGGGTATTGGAGGTGTCAAAGCTGTTGCAGATTACAAAGTTTACACAGCTGGATCTGTTTTGGATCTTCTTCATTTTGTTGCACCAAAGTTGATGAAGCGTGGTAGTGCTCATTTTTCATATGGAATTGCTGATGATCTGGATGACAAAAAATACGAACACTACAAATATTGGTCAAATCCCCTGGAAACAAAGTAAGCTTCTATAGTTCTATAGAAGTATTCTTGATCTTTGTCATGCTCTTAGGGCAGCTCCTCTCAGTCATCTTCAATTCATCAATGTTTTGTTGTACAACATGGAAATTAAAGGTGAAATTTCAGGGTTCTAGGGAGTGCAAACATATTTTTTTTCTTGGAAGTATTGGTCCATCTTGTTAACATTCTCTATTAGTTTCAATCCCAAAGTTCCAGTTTGGCAGTTACTGTTCACTTCTTCCTTTGTCTGTAATTGTTCATAGAAGAAACTGCAAAATATGATCCTCCTTGACCTTGTTCATTATGTGTTACAGCAATCTATTTTGGCATATTTATAGCAAGTTTTCACTGTGATGTTCCATTTACAGATTGCCCAATGCACCAGGGATGGAAATCTTCTCAATGTATGGAGTTGGAATCCCAACTGAAAGAGCCTATGTATACAAACTAAGTCCTGGTGGAGATTGCTATATTCCTTTCCAGATAGATACTTCGGCTGAGGGTGGAAGTGAAAGT</genome_strand>
        <mrna_strand>AGGACCAGAAAGTCGGCTAATGCTACTCGTGTGAAGTATGGAAGATTAATATCATTTGGGAAGCATGTAGCTAATTTGCACTCATCAGAGATTGAGAGGATTGACTTCAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTCTTAAAGGTAAAAGTCATGCCAATTCCACTTGCCGTGATGTGTGGACTGAGTACCATGATATGGGTATTGGAGGTGTCAAAGCTGTTGCAGATTACAAAGTTTACACAGCTGGATCTGTTTTGGATCTTCTTCATTTTGTTGCACCAAAGTTGATGAAGCGTGGTAGTGCTCATTTTTCATATGGAATTGCTGATGATCTGGATGACAAAAAATACGAACACTACAAATATTGGTCAAATCCCCTGGAAACAAA................................................................................................................................................................................................................................................................................................................................................................................ATTGCCCAATGCACCAGGGATGGAAATCTTCTCAATGTATGGAGTTGGAATCCCAACTGAAAGAGCCTATGTATACAAACTAAGTCCTGGTGGAGATTGCTATATTCCTTTCCAGATAGATACTTCGGCTGAAGGTGGAAGTGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CVfEXi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325279" ref_strand="+" ref_description="SGN-U325279        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | lecithin:cholesterol acyltransferase family protein / LACT family protein, similar to SP:P40345 Phospholipid:diacylglycerol acyltransferase (EC 2.3.1.158) (PDAT) {Saccharomyces cerevisiae}; contains Pfam profile PF02450: Lecithin:cholesterol acyltransferase (phosphatidylcholine-sterol acyltransferase) | chr5:4393065-4397544 FORWARD | Aliases: T6I14.2(evalue: 2e-35, score=145) genbank/nr: gi|37724553|gb|AAO17787.1| lecithin diacylglycerol cholesterol acyltransferase [Arabidopsis thaliana](evalue: 2e-33, score=145)">
      <seq>aagagatgtgttaccaccattgactaacctggagtttccagcctttcgtttatctgcgagaggcattttgagctaaagtagaaattgctctttctgcaggtctatggccccaagtttcttagaaaatgaaatgttcaactttcaaactttacagcatgtaatgcgaatgactcgtacatgggattcaacaatgtcaatgatacctaaaggtggggacacaatctggggtggactggattggtcccctgaagaaggccatgaatgtaatgaaaagaagccaaagaataatagcacccagacatcagagagtgacaggaccagaaagtcggctaatgctactcgtgtgaagtatggaagattaatatcatttgggaagcatgtagctaatttgcactcatcagagattgagaggattgacttcagagtaatgttcttactttaattttggattttaactaactactatctctagggtaaaaacttacttgaacgttcacgttcctaaataacattatgacccattaacaaaagtgtggaaagatgcttagacctaaatcctgacatgccgacccaaaaaaaaaggtaccaacaggctgtcacaaatttgttaaatatacaaataatcttttttgcatcagcttccccaatgaatatgcatcctttgctctactttctaatgtagaggatgggaaaggcctggtgagatgagacacaactggaataagaagagaacattttctctttcatacaagtttgaagttggatgtaataccttatcccccctcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0041L08-XAY7n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0041L08.1" temp_strand="-" temp_description="C07HBa0041L08.1  AC210352.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0041L08 upload_account_name:france">
        <position start="9962" stop="8564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9662" g_stop="8864" g_length="799"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="798" r_length="798" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0041L08.1" gen_strand="-" ref_id="SGN-U325279" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0041L08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9662" e_stop="8864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGATGTGTTACCACCATTGACTAACCTGGAGTTTCCAGCCTTTCGTTTATCTGCGAGAGGCATTGTTGAGCTAAAGTAGAAATTGCTCCTTCTGCAGGTCTATGGCCCCAAGTTTCTTAGAAAATGAAATGTTCAACTTTCAAACTTTACAGCATGTAATGCGAATGACTCGTACATGGGATTCAACAATGTCAATGATACCTAAAGGTGGGGACACAATCTGGGGTGGACTGGATTGGTCCCCTGAAGAAGGCCATGAATGTAATGAAAAGAAGCCAAAGAATAATAGCACCCAGACATCAGAGAGTGACAGGACCAGAAAGTCGGCTAATGCTACTCGTGTGAAGTATGGAAGATTAATATCATTTGGGAAGCATGTAGCTAATTTGCACTCATCAGAGATTGAGAGGATTGACTTCAGAGTAATGTTCTTACTTTAATTTTGGATTTTAACTAACTACTATCTCTAGGGTAAAAACTTACTTGAACGTTCACGTTCCTAAATAACATTATGACCCATTAACAAAAGTGTGGAAAGATGCTTAGACCTAAATCCTGACATGCCGACCCAAAAAAAAAGGTACCAACAGGCTGTCACAAATTTGTTAAATATACAAATAATCTTTTTTGCATCAGCTTCCCCAATGAATATGCATCCTTTGCTCTACTTTCTAATGTAGAGGATGGGAAAGGCCTGGTGAGATGAGACACAACTGGAATAAGAAGAGAACATTTTCTCTTTCATACAAGTTTGAAGTTGGATGTAATACCTTATCCCCCCTCAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>AAGAGATGTGTTACCACCATTGACTAACCTGGAGTTTCCAGCCTTTCGTTTATCTGCGAGAGGCATT-TTGAGCTAAAGTAGAAATTGCTCTTTCTGCAGGTCTATGGCCCCAAGTTTCTTAGAAAATGAAATGTTCAACTTTCAAACTTTACAGCATGTAATGCGAATGACTCGTACATGGGATTCAACAATGTCAATGATACCTAAAGGTGGGGACACAATCTGGGGTGGACTGGATTGGTCCCCTGAAGAAGGCCATGAATGTAATGAAAAGAAGCCAAAGAATAATAGCACCCAGACATCAGAGAGTGACAGGACCAGAAAGTCGGCTAATGCTACTCGTGTGAAGTATGGAAGATTAATATCATTTGGGAAGCATGTAGCTAATTTGCACTCATCAGAGATTGAGAGGATTGACTTCAGAGTAATGTTCTTACTTTAATTTTGGATTTTAACTAACTACTATCTCTAGGGTAAAAACTTACTTGAACGTTCACGTTCCTAAATAACATTATGACCCATTAACAAAAGTGTGGAAAGATGCTTAGACCTAAATCCTGACATGCCGACCCAAAAAAAAAGGTACCAACAGGCTGTCACAAATTTGTTAAATATACAAATAATCTTTTTTGCATCAGCTTCCCCAATGAATATGCATCCTTTGCTCTACTTTCTAATGTAGAGGATGGGAAAGGCCTGGTGAGATGAGACACAACTGGAATAAGAAGAGAACATTTTCTCTTTCATACAAGTTTGAAGTTGGATGTAATACCTTATCCCCCCTCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CVfEXi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328862" ref_strand="+" ref_description="SGN-U328862        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | lecithin:cholesterol acyltransferase family protein / LACT family protein, similar to SP:P40345 Phospholipid:diacylglycerol acyltransferase (EC 2.3.1.158) (PDAT) {Saccharomyces cerevisiae}; contains Pfam profile PF02450: Lecithin:cholesterol acyltransferase (phosphatidylcholine-sterol acyltransferase) | chr5:4393065-4397544 FORWARD | Aliases: T6I14.2(evalue: 2e-90, score=328) genbank/nr: gi|15240676|ref|NP_196868.1| expressed protein [Arabidopsis thaliana] gi|9758029|dbj|BAB08690.1| contains similarity to unknown protein~gene_id:MSH12.10~ref|NP_014405.1 [Arabidopsis thaliana] gi|15450695|gb|AAK96619.1| AT5g13640/MSH12_10 [Arabidopsis thaliana](evalue: 1e-88, score=328)">
      <seq>gtcgaaataaaatgcagacctctttgctgggtggaacatatgtcacttgataatgaaactggattggatccttctggtataaggattagacctgtctctgggcttgtagcagctgattactttgctccaggttattttgtttgggctgttttaattgccaatttggctcgcattggatatgaggagaaaaacatgtatatggctgcctatgattggaggatctcatttcagaacactgaggtgcgagatcaaaccctaagcagaattaaaagtaacatagaactcatggtggcttcaagtggtgggaaaaaggtggttataattccgcactcaatgggtgttctatacttcttgcatttcatgaaatgggtagaggcgccagctccaatgggtggaggaggtggatcagattggtgtgctaaacatttaaaagcagtaatgaacattggaggaccctttttgggtgtcccgaaagcagtctcaggtttattctcagctgaagccaaggatattgctgctgccaggtttctctctcttcaatgaatagtttgctttctattaaaataacagtaattatgttgcactctcttcttttgaaatgtctaattgttgagataaaaactcggacacaagttccgccgaacccagtagcttttgctcaaccagtgtgtttgcattaataaatacttaatgtgtacaaatagtaaatatagaaccccgttattagcacttcatcgtactaaaatccaaaactcataaagttgtaatcctggctccacctttctaagtgggtcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0041L08-XAY7n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0041L08.1" temp_strand="-" temp_description="C07HBa0041L08.1  AC210352.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0041L08 upload_account_name:france">
        <position start="11875" stop="10297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11575" g_stop="11336" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11335" i_stop="11155" i_length="181">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11154" g_stop="10597" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="798" r_length="558" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0041L08.1" gen_strand="-" ref_id="SGN-U328862" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0041L08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11575" e_stop="11336"/>
          <exon e_start="11154" e_stop="10597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAAATAAAATGCAGACCTCTTTGCTGGGTGGAACATATGTCACTTGATAATGAAACTGGATTGGATCCTTCTGGTATAAGGATTAGACCTGTCTCTGGGCTTGTAGCAGCTGATTACTTTGCTCCAGGTTATTTTGTTTGGGCTGTTTTAATTGCCAATTTGGCTCGCATTGGATATGAGGAGAAAAACATGTATATGGCTGCCTATGATTGGAGGATCTCATTTCAGAACACTGAGGTACTGTGAACTCTGAAAGAAGCATATGCGCAGTTTTCTTTGTTATTCTGATGTTTTATTATTTACTAGTCTATGTTTCCTTACAGTATCTGACCCCGAGTTACAGAATATGTGTATCTGCACGTCTAGCCACTACCTTTGCAAAATGATAACCCATCATTTTTTCTCTCAAAATCTGTAGGTGCGAGATCAAACCCTAAGCAGAATTAAAAGTAACATAGAACTCATGGTGGCTTCAAGTGGTGGGAAAAAGGTGGTTATAATTCCGCACTCAATGGGTGTTCTATACTTCTTGCATTTCATGAAATGGGTAGAGGCGCCAGCTCCAATGGGTGGAGGAGGTGGATCAGATTGGTGTGCTAAACATTTAAAAGCAGTAATGAACATTGGAGGACCCTTTTTGGGTGTCCCGAAAGCAGTCTCAGGTTTATTCTCAGCTGAAGCCAAGGATATTGCTGCTGCCAGGTTTCTCTCTCTTCAATGAATAGTTTGCTTTCTATTAAAATAACAGTAATTATGTTGCACTCTCTTCTTTTGAAATGTCTAATTGTTGAGATAAAAACTCGGACACAAGTTCCGCCGAACCCAGTAGCTTTTGCTCAACCAGTGTGTTTGCATTAATAAATACTTAATGTGTACAAATAGTAAATATAGAACCCCGTTATTAGCACTTCATCGTACTAAAATCCAAAACTCATAAAGTTGTAATCCTGGCTCCACCTTTCTAAGTGGTTCTTGA</genome_strand>
        <mrna_strand>GTCGAAATAAAATGCAGACCTCTTTGCTGGGTGGAACATATGTCACTTGATAATGAAACTGGATTGGATCCTTCTGGTATAAGGATTAGACCTGTCTCTGGGCTTGTAGCAGCTGATTACTTTGCTCCAGGTTATTTTGTTTGGGCTGTTTTAATTGCCAATTTGGCTCGCATTGGATATGAGGAGAAAAACATGTATATGGCTGCCTATGATTGGAGGATCTCATTTCAGAACACTGAG.....................................................................................................................................................................................GTGCGAGATCAAACCCTAAGCAGAATTAAAAGTAACATAGAACTCATGGTGGCTTCAAGTGGTGGGAAAAAGGTGGTTATAATTCCGCACTCAATGGGTGTTCTATACTTCTTGCATTTCATGAAATGGGTAGAGGCGCCAGCTCCAATGGGTGGAGGAGGTGGATCAGATTGGTGTGCTAAACATTTAAAAGCAGTAATGAACATTGGAGGACCCTTTTTGGGTGTCCCGAAAGCAGTCTCAGGTTTATTCTCAGCTGAAGCCAAGGATATTGCTGCTGCCAGGTTTCTCTCTCTTCAATGAATAGTTTGCTTTCTATTAAAATAACAGTAATTATGTTGCACTCTCTTCTTTTGAAATGTCTAATTGTTGAGATAAAAACTCGGACACAAGTTCCGCCGAACCCAGTAGCTTTTGCTCAACCAGTGTGTTTGCATTAATAAATACTTAATGTGTACAAATAGTAAATATAGAACCCCGTTATTAGCACTTCATCGTACTAAAATCCAAAACTCATAAAGTTGTAATCCTGGCTCCACCTTTCTAAGTGGGTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CVfEXi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U336382" ref_strand="+" ref_description="SGN-U336382        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-75, score=284)">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0041L08-XAY7n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0041L08.1" temp_strand="+" temp_description="C07HBa0041L08.1  AC210352.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0041L08 upload_account_name:france">
        <position start="43714" stop="44854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44014" g_stop="44554" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0041L08.1" gen_strand="+" ref_id="SGN-U336382" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0041L08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44014" e_stop="44554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCATCCATTGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAAAGTGAAACTCCGTGCAATCGAACAATTTTTGAGATATAAAGTTTGGCTAACTTCTCTGCATTATAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAG-TCATCTATCAACAATTACCCAAATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAAGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACCTGTTGACAATTCGGGCATTGAGCAACAAAATCAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGATGCGGGGTACACATAC-CCTTCCCTTAATCCTCAAAAAACCTTCCTCATTGATTTTTGCTTCTTT</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTT-ATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CVfEXi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328094" ref_strand="+" ref_description="SGN-U328094        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-65, score=251)">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0041L08-XAY7n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0041L08.1" temp_strand="+" temp_description="C07HBa0041L08.1  AC210352.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0041L08 upload_account_name:france">
        <position start="44158" stop="45344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44458" g_stop="45044" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0041L08.1" gen_strand="+" ref_id="SGN-U328094" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0041L08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44458" e_stop="45044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATCAAATCATCGATGCGGGGTACACATACCCTTCCCTTAATCCTCAAAAAACCTTCCTCATTGATTTTTGCTTCTTTAGCCTCTCCTCGCAATACCTTATCTCGAATCCGGATCAGTTTCTCATCAGTAAACTGCTTTCCTTTAATTTTGTCAAGAAAGAAAGATTTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCTAGTACTTCCAGCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCTCTCCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTTAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAAATATGATGATCCGTATAGACTTCACACTTAACCCCATATCGATAATGTCTCCATTGCTTTAATGCAAACACTACTGCAGCCAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-CVfEXi/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346572" ref_strand="+" ref_description="SGN-U346572        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 2e-31, score=89.7)">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0041L08-XAY7n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0041L08.1" temp_strand="-" temp_description="C07HBa0041L08.1  AC210352.1 htgs_phase:2 submitted_to_sgn_as:C07HBa0041L08 upload_account_name:france">
        <position start="48015" stop="46760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47715" g_stop="47060" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0041L08.1" gen_strand="-" ref_id="SGN-U346572" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0041L08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47715" e_stop="47060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAATTAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGTCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGCTGTGGCTCCCCGCATGGATGCCTCATTAGAAATAGGCACGTTTCCTCGATTGACTACAGGACCTATAATGACAAGTGATCAGCACAAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTTAAGGGTGCTGAATCTGAGGATCCCAATGATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATTGGCATAGTGGAATGATTCGGTGTTGAGTTTGTAACCTATTAGTTTCAGGGAAATTCCAAAATGTGGTGGCGCTCGTATGTTGAGTGTCAACCAGCACAGGAACCACCCATGACTTGAGCATCATTCTCTAGCTTATTTATGGAGAAGTATATACCCTGGACTTTGAGGGATAGGAAGAGAGATGAGTTCCTGATCCTAGAGCAAGATAGGATGTCGGTTACTGCTTATGAGGCTAAGTTTCGTGCATTATCCAAGTATGCCACCCAGCTTTGCTTCAATCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGATTGAGGTCAGATTTGCAGATTCCAGCCTTACAGGTAGCT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6764" PGL_stop="6129"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6764" e_stop="6555"/>
            <exon e_start="6474" e_stop="6129"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.929" acc_prob="0.980" e_score="0.971"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="6764" e_stop="6555" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="0.929" acc_prob="0.980">
            <gDNA_intron_boundary i_start="6554" i_stop="6475" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="6474" e_stop="6129" e_length="346"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6764" stop="6555"/>
              <exon start="6474" stop="6129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346040" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTACAATCACGCCCCTCCAGCTAATCTTTTAGAGGGAAGGGGAACGCAAAGTGGTGCACACGTTGATATAATGGGAAATTTTGCACTTATTGAAGATATCATTAGAGTAGCTGCTGGGGCTACTGGAGAAGACCTGGGAGGAGATCAATTATACTCGGGTATTTTCAAGTGGTCTGAAAGGATTAAACTGAAGCTTTAGATTTCAAATG : AATTTCATGGGTGCAATCAATTGGTTTGAGGAACTGGTGGTGCTCTACTATACGTCTTGCTTCTCGTCTCCTGGCTGAAACATCTGCTGTATACTTGAAACAATAATACTCTGGGAAACCTGAAGCTGCAAATGTCGCAGGAAGCATGGATGTATAGGTAAATTTTGGACATAACATTGATTTTTTGCCTGTAATTATATGATCCTTGATAGCATAGTGTAGTCTGTAGACCTAATATTGGAGCACAAGTACTGCATTTATATGTTCAATTATTACACAGCACACAAGGAGGGACAAGTGTATTTCTATCGTGGGTTATTTGAAATTTATAAGTAAATATTTACTC</gDNA_template>
            <first_frame> S  T  I  T  P  L  Q  L  I  F  *  R  E  G  E  R  K  V  V  H  T  L  I  *  W  E  I  L  H  L  L  K  I  S  L  E  *  L  L  G  L  L  E  K  T  W  E  E  I  N  Y  T  R  V  F  S  S  G  L  K  G  L  N  *  S  F  R  F  Q  M  :  N  F  M  G  A  I  N  W  F  E  E  L  V  V  L  Y  Y  T  S  C  F  S  S  P  G  *  N  I  C  C  I  L  E  T  I  I  L  W  E  T  *  S  C  K  C  R  R  K  H  G  C  I  G  K  F  W  T  *  H  *  F  F  A  C  N  Y  M  I  L  D  S  I  V  *  S  V  D  L  I  L  E  H  K  Y  C  I  Y  M  F  N  Y  Y  T  A  H  K  E  G  Q  V  Y  F  Y  R  G  L  F  E  I  Y  K  *  I  F  T  </first_frame>
            <second_frame>  V  Q  S  R  P  S  S  *  S  F  R  G  K  G  N  A  K  W  C  T  R  *  Y  N  G  K  F  C  T  Y  *  R  Y  H  *  S  S  C  W  G  Y  W  R  R  P  G  R  R  S  I  I  L  G  Y  F  Q  V  V  *  K  D  *  T  E  A  L  D  F  K  * :   I  S  W  V  Q  S  I  G  L  R  N  W  W  C  S  T  I  R  L  A  S  R  L  L  A  E  T  S  A  V  Y  L  K  Q  *  Y  S  G  K  P  E  A  A  N  V  A  G  S  M  D  V  *  V  N  F  G  H  N  I  D  F  L  P  V  I  I  *  S  L  I  A  *  C  S  L  *  T  *  Y  W  S  T  S  T  A  F  I  C  S  I  I  T  Q  H  T  R  R  D  K  C  I  S  I  V  G  Y  L  K  F  I  S  K  Y  L  L </second_frame>
            <third_frame>   Y  N  H  A  P  P  A  N  L  L  E  G  R  G  T  Q  S  G  A  H  V  D  I  M  G  N  F  A  L  I  E  D  I  I  R  V  A  A  G  A  T  G  E  D  L  G  G  D  Q  L  Y  S  G  I  F  K  W  S  E  R  I  K  L  K  L  *  I  S  N   : E  F  H  G  C  N  Q  L  V  *  G  T  G  G  A  L  L  Y  V  L  L  L  V  S  W  L  K  H  L  L  Y  T  *  N  N  N  T  L  G  N  L  K  L  Q  M  S  Q  E  A  W  M  Y  R  *  I  L  D  I  T  L  I  F  C  L  *  L  Y  D  P  *  *  H  S  V  V  C  R  P  N  I  G  A  Q  V  L  H  L  Y  V  Q  L  L  H  S  T  Q  G  G  T  S  V  F  L  S  W  V  I  *  N  L  *  V  N  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0041L08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6762" stop="6565"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNHAPPANLLEGRGTQSGAHVDIMGNFALIEDIIRVAAGATGEDLGGDQLYSGIFKWSERIKLKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9662" PGL_stop="6901"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9662" e_stop="8864"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="9662" e_stop="8864" e_length="799"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9662" stop="8864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325279" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAGATGTGTTACCACCATTGACTAACCTGGAGTTTCCAGCCTTTCGTTTATCTGCGAGAGGCATTGTTGAGCTAAAGTAGAAATTGCTCCTTCTGCAGGTCTATGGCCCCAAGTTTCTTAGAAAATGAAATGTTCAACTTTCAAACTTTACAGCATGTAATGCGAATGACTCGTACATGGGATTCAACAATGTCAATGATACCTAAAGGTGGGGACACAATCTGGGGTGGACTGGATTGGTCCCCTGAAGAAGGCCATGAATGTAATGAAAAGAAGCCAAAGAATAATAGCACCCAGACATCAGAGAGTGACAGGACCAGAAAGTCGGCTAATGCTACTCGTGTGAAGTATGGAAGATTAATATCATTTGGGAAGCATGTAGCTAATTTGCACTCATCAGAGATTGAGAGGATTGACTTCAGAGTAATGTTCTTACTTTAATTTTGGATTTTAACTAACTACTATCTCTAGGGTAAAAACTTACTTGAACGTTCACGTTCCTAAATAACATTATGACCCATTAACAAAAGTGTGGAAAGATGCTTAGACCTAAATCCTGACATGCCGACCCAAAAAAAAAGGTACCAACAGGCTGTCACAAATTTGTTAAATATACAAATAATCTTTTTTGCATCAGCTTCCCCAATGAATATGCATCCTTTGCTCTACTTTCTAATGTAGAGGATGGGAAAGGCCTGGTGAGATGAGACACAACTGGAATAAGAAGAGAACATTTTCTCTTTCATACAAGTTTGAAGTTGGATGTAATACCTTATCCCCCCTCAAAAAAAAAAAAA</gDNA_template>
            <first_frame> K  R  C  V  T  T  I  D  *  P  G  V  S  S  L  S  F  I  C  E  R  H  C  *  A  K  V  E  I  A  P  S  A  G  L  W  P  Q  V  S  *  K  M  K  C  S  T  F  K  L  Y  S  M  *  C  E  *  L  V  H  G  I  Q  Q  C  Q  *  Y  L  K  V  G  T  Q  S  G  V  D  W  I  G  P  L  K  K  A  M  N  V  M  K  R  S  Q  R  I  I  A  P  R  H  Q  R  V  T  G  P  E  S  R  L  M  L  L  V  *  S  M  E  D  *  Y  H  L  G  S  M  *  L  I  C  T  H  Q  R  L  R  G  L  T  S  E  *  C  S  Y  F  N  F  G  F  *  L  T  T  I  S  R  V  K  T  Y  L  N  V  H  V  P  K  *  H  Y  D  P  L  T  K  V  W  K  D  A  *  T  *  I  L  T  C  R  P  K  K  K  G  T  N  R  L  S  Q  I  C  *  I  Y  K  *  S  F  L  H  Q  L  P  Q  *  I  C  I  L  C  S  T  F  *  C  R  G  W  E  R  P  G  E  M  R  H  N  W  N  K  K  R  T  F  S  L  S  Y  K  F  E  V  G  C  N  T  L  S  P  L  K  K  K  K  </first_frame>
            <second_frame>  R  D  V  L  P  P  L  T  N  L  E  F  P  A  F  R  L  S  A  R  G  I  V  E  L  K  *  K  L  L  L  L  Q  V  Y  G  P  K  F  L  R  K  *  N  V  Q  L  S  N  F  T  A  C  N  A  N  D  S  Y  M  G  F  N  N  V  N  D  T  *  R  W  G  H  N  L  G  W  T  G  L  V  P  *  R  R  P  *  M  *  *  K  E  A  K  E  *  *  H  P  D  I  R  E  *  Q  D  Q  K  V  G  *  C  Y  S  C  E  V  W  K  I  N  I  I  W  E  A  C  S  *  F  A  L  I  R  D  *  E  D  *  L  Q  S  N  V  L  T  L  I  L  D  F  N  *  L  L  S  L  G  *  K  L  T  *  T  F  T  F  L  N  N  I  M  T  H  *  Q  K  C  G  K  M  L  R  P  K  S  *  H  A  D  P  K  K  K  V  P  T  G  C  H  K  F  V  K  Y  T  N  N  L  F  C  I  S  F  P  N  E  Y  A  S  F  A  L  L  S  N  V  E  D  G  K  G  L  V  R  *  D  T  T  G  I  R  R  E  H  F  L  F  H  T  S  L  K  L  D  V  I  P  Y  P  P  S  K  K  K  K </second_frame>
            <third_frame>   E  M  C  Y  H  H  *  L  T  W  S  F  Q  P  F  V  Y  L  R  E  A  L  L  S  *  S  R  N  C  S  F  C  R  S  M  A  P  S  F  L  E  N  E  M  F  N  F  Q  T  L  Q  H  V  M  R  M  T  R  T  W  D  S  T  M  S  M  I  P  K  G  G  D  T  I  W  G  G  L  D  W  S  P  E  E  G  H  E  C  N  E  K  K  P  K  N  N  S  T  Q  T  S  E  S  D  R  T  R  K  S  A  N  A  T  R  V  K  Y  G  R  L  I  S  F  G  K  H  V  A  N  L  H  S  S  E  I  E  R  I  D  F  R  V  M  F  L  L  *  F  W  I  L  T  N  Y  Y  L  *  G  K  N  L  L  E  R  S  R  S  *  I  T  L  *  P  I  N  K  S  V  E  R  C  L  D  L  N  P  D  M  P  T  Q  K  K  R  Y  Q  Q  A  V  T  N  L  L  N  I  Q  I  I  F  F  A  S  A  S  P  M  N  M  H  P  L  L  Y  F  L  M  *  R  M  G  K  A  W  *  D  E  T  Q  L  E  *  E  E  N  I  F  S  F  I  Q  V  *  S  W  M  *  Y  L  I  P  P  Q  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0041L08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9585" stop="9220"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRNCSFCRSMAPSFLENEMFNFQTLQHVMRMTRTWDSTMSMIPKGGDTIWGGLDWSPEEGHECNEKKPKNNSTQTSESDRTRKSANATRVKYGRLISFGKHVANLHSSEIERIDFRVMFLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9348" e_stop="9238"/>
            <exon e_start="7676" e_stop="7417"/>
            <exon e_start="7048" e_stop="6901"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9348" e_stop="9238" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9237" i_stop="7677" i_length="1561"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7676" e_stop="7417" e_length="260"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="7416" i_stop="7049" i_length="368"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="7048" e_stop="6901" e_length="148"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9348" stop="9238"/>
              <exon start="7676" stop="7417"/>
              <exon start="7048" stop="6901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338184" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGACCAGAAAGTCGGCTAATGCTACTCGTGTGAAGTATGGAAGATTAATATCATTTGGGAAGCATGTAGCTAATTTGCACTCATCAGAGATTGAGAGGATTGACTTCAGA : GATGCTCTTAAAGGTAAAAGTCATGCCAATTCCACTTGCCGTGATGTGTGGACTGAGTACCATGATATGGGTATTGGAGGTGTCAAAGCTGTTGCAGATTACAAAGTTTACACAGCTGGATCTGTTTTGGATCTTCTTCATTTTGTTGCACCAAAGTTGATGAAGCGTGGTAGTGCTCATTTTTCATATGGAATTGCTGATGATCTGGATGACAAAAAATACGAACACTACAAATATTGGTCAAATCCCCTGGAAACAAA : ATTGCCCAATGCACCAGGGATGGAAATCTTCTCAATGTATGGAGTTGGAATCCCAACTGAAAGAGCCTATGTATACAAACTAAGTCCTGGTGGAGATTGCTATATTCCTTTCCAGATAGATACTTCGGCTGAGGGTGGAAGTGAAAGT</gDNA_template>
            <first_frame> R  T  R  K  S  A  N  A  T  R  V  K  Y  G  R  L  I  S  F  G  K  H  V  A  N  L  H  S  S  E  I  E  R  I  D  F  R  :  D  A  L  K  G  K  S  H  A  N  S  T  C  R  D  V  W  T  E  Y  H  D  M  G  I  G  G  V  K  A  V  A  D  Y  K  V  Y  T  A  G  S  V  L  D  L  L  H  F  V  A  P  K  L  M  K  R  G  S  A  H  F  S  Y  G  I  A  D  D  L  D  D  K  K  Y  E  H  Y  K  Y  W  S  N  P  L  E  T  K :   L  P  N  A  P  G  M  E  I  F  S  M  Y  G  V  G  I  P  T  E  R  A  Y  V  Y  K  L  S  P  G  G  D  C  Y  I  P  F  Q  I  D  T  S  A  E  G  G  S  E  S </first_frame>
            <second_frame>  G  P  E  S  R  L  M  L  L  V  *  S  M  E  D  *  Y  H  L  G  S  M  *  L  I  C  T  H  Q  R  L  R  G  L  T  S  E :   M  L  L  K  V  K  V  M  P  I  P  L  A  V  M  C  G  L  S  T  M  I  W  V  L  E  V  S  K  L  L  Q  I  T  K  F  T  Q  L  D  L  F  W  I  F  F  I  L  L  H  Q  S  *  *  S  V  V  V  L  I  F  H  M  E  L  L  M  I  W  M  T  K  N  T  N  T  T  N  I  G  Q  I  P  W  K  Q   : N  C  P  M  H  Q  G  W  K  S  S  Q  C  M  E  L  E  S  Q  L  K  E  P  M  Y  T  N  *  V  L  V  E  I  A  I  F  L  S  R  *  I  L  R  L  R  V  E  V  K   </second_frame>
            <third_frame>   D  Q  K  V  G  *  C  Y  S  C  E  V  W  K  I  N  I  I  W  E  A  C  S  *  F  A  L  I  R  D  *  E  D  *  L  Q   : R  C  S  *  R  *  K  S  C  Q  F  H  L  P  *  C  V  D  *  V  P  *  Y  G  Y  W  R  C  Q  S  C  C  R  L  Q  S  L  H  S  W  I  C  F  G  S  S  S  F  C  C  T  K  V  D  E  A  W  *  C  S  F  F  I  W  N  C  *  *  S  G  *  Q  K  I  R  T  L  Q  I  L  V  K  S  P  G  N  K  :  I  A  Q  C  T  R  D  G  N  L  L  N  V  W  S  W  N  P  N  *  K  S  L  C  I  Q  T  K  S  W  W  R  L  L  Y  S  F  P  D  R  Y  F  G  *  G  W  K  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0041L08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9348" stop="9238"/>
                    <exon start="7676" stop="7417"/>
                    <exon start="7048" stop="6901"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTRKSANATRVKYGRLISFGKHVANLHSSEIERIDFRDALKGKSHANSTCRDVWTEYHDMGIGGVKAVADYKVYTAGSVLDLLHFVAPKLMKRGSAHFSYGIADDLDDKKYEHYKYWSNPLETKLPNAPGMEIFSMYGVGIPTERAYVYKLSPGGDCYIPFQIDTSAEGGSES</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="11575" PGL_stop="10597"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11575" e_stop="11336"/>
            <exon e_start="11154" e_stop="10597"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.955" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11575" e_stop="11336" e_length="240"/>
          </exon>
          <intron i_serial="1" don_prob="0.955" acc_prob="0.956">
            <gDNA_intron_boundary i_start="11335" i_stop="11155" i_length="181"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="11154" e_stop="10597" e_length="558"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11575" stop="11336"/>
              <exon start="11154" stop="10597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328862" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCGAAATAAAATGCAGACCTCTTTGCTGGGTGGAACATATGTCACTTGATAATGAAACTGGATTGGATCCTTCTGGTATAAGGATTAGACCTGTCTCTGGGCTTGTAGCAGCTGATTACTTTGCTCCAGGTTATTTTGTTTGGGCTGTTTTAATTGCCAATTTGGCTCGCATTGGATATGAGGAGAAAAACATGTATATGGCTGCCTATGATTGGAGGATCTCATTTCAGAACACTGAG : GTGCGAGATCAAACCCTAAGCAGAATTAAAAGTAACATAGAACTCATGGTGGCTTCAAGTGGTGGGAAAAAGGTGGTTATAATTCCGCACTCAATGGGTGTTCTATACTTCTTGCATTTCATGAAATGGGTAGAGGCGCCAGCTCCAATGGGTGGAGGAGGTGGATCAGATTGGTGTGCTAAACATTTAAAAGCAGTAATGAACATTGGAGGACCCTTTTTGGGTGTCCCGAAAGCAGTCTCAGGTTTATTCTCAGCTGAAGCCAAGGATATTGCTGCTGCCAGGTTTCTCTCTCTTCAATGAATAGTTTGCTTTCTATTAAAATAACAGTAATTATGTTGCACTCTCTTCTTTTGAAATGTCTAATTGTTGAGATAAAAACTCGGACACAAGTTCCGCCGAACCCAGTAGCTTTTGCTCAACCAGTGTGTTTGCATTAATAAATACTTAATGTGTACAAATAGTAAATATAGAACCCCGTTATTAGCACTTCATCGTACTAAAATCCAAAACTCATAAAGTTGTAATCCTGGCTCCACCTTTCTAAGTGGTTCTTGA</gDNA_template>
            <first_frame> V  E  I  K  C  R  P  L  C  W  V  E  H  M  S  L  D  N  E  T  G  L  D  P  S  G  I  R  I  R  P  V  S  G  L  V  A  A  D  Y  F  A  P  G  Y  F  V  W  A  V  L  I  A  N  L  A  R  I  G  Y  E  E  K  N  M  Y  M  A  A  Y  D  W  R  I  S  F  Q  N  T  E  :  V  R  D  Q  T  L  S  R  I  K  S  N  I  E  L  M  V  A  S  S  G  G  K  K  V  V  I  I  P  H  S  M  G  V  L  Y  F  L  H  F  M  K  W  V  E  A  P  A  P  M  G  G  G  G  G  S  D  W  C  A  K  H  L  K  A  V  M  N  I  G  G  P  F  L  G  V  P  K  A  V  S  G  L  F  S  A  E  A  K  D  I  A  A  A  R  F  L  S  L  Q  *  I  V  C  F  L  L  K  *  Q  *  L  C  C  T  L  F  F  *  N  V  *  L  L  R  *  K  L  G  H  K  F  R  R  T  Q  *  L  L  L  N  Q  C  V  C  I  N  K  Y  L  M  C  T  N  S  K  Y  R  T  P  L  L  A  L  H  R  T  K  I  Q  N  S  *  S  C  N  P  G  S  T  F  L  S  G  S  * </first_frame>
            <second_frame>  S  K  *  N  A  D  L  F  A  G  W  N  I  C  H  L  I  M  K  L  D  W  I  L  L  V  *  G  L  D  L  S  L  G  L  *  Q  L  I  T  L  L  Q  V  I  L  F  G  L  F  *  L  P  I  W  L  A  L  D  M  R  R  K  T  C  I  W  L  P  M  I  G  G  S  H  F  R  T  L  R :   C  E  I  K  P  *  A  E  L  K  V  T  *  N  S  W  W  L  Q  V  V  G  K  R  W  L  *  F  R  T  Q  W  V  F  Y  T  S  C  I  S  *  N  G  *  R  R  Q  L  Q  W  V  E  E  V  D  Q  I  G  V  L  N  I  *  K  Q  *  *  T  L  E  D  P  F  W  V  S  R  K  Q  S  Q  V  Y  S  Q  L  K  P  R  I  L  L  L  P  G  F  S  L  F  N  E  *  F  A  F  Y  *  N  N  S  N  Y  V  A  L  S  S  F  E  M  S  N  C  *  D  K  N  S  D  T  S  S  A  E  P  S  S  F  C  S  T  S  V  F  A  L  I  N  T  *  C  V  Q  I  V  N  I  E  P  R  Y  *  H  F  I  V  L  K  S  K  T  H  K  V  V  I  L  A  P  P  F  *  V  V  L   </second_frame>
            <third_frame>   R  N  K  M  Q  T  S  L  L  G  G  T  Y  V  T  *  *  *  N  W  I  G  S  F  W  Y  K  D  *  T  C  L  W  A  C  S  S  *  L  L  C  S  R  L  F  C  L  G  C  F  N  C  Q  F  G  S  H  W  I  *  G  E  K  H  V  Y  G  C  L  *  L  E  D  L  I  S  E  H  *   : G  A  R  S  N  P  K  Q  N  *  K  *  H  R  T  H  G  G  F  K  W  W  E  K  G  G  Y  N  S  A  L  N  G  C  S  I  L  L  A  F  H  E  M  G  R  G  A  S  S  N  G  W  R  R  W  I  R  L  V  C  *  T  F  K  S  S  N  E  H  W  R  T  L  F  G  C  P  E  S  S  L  R  F  I  L  S  *  S  Q  G  Y  C  C  C  Q  V  S  L  S  S  M  N  S  L  L  S  I  K  I  T  V  I  M  L  H  S  L  L  L  K  C  L  I  V  E  I  K  T  R  T  Q  V  P  P  N  P  V  A  F  A  Q  P  V  C  L  H  *  *  I  L  N  V  Y  K  *  *  I  *  N  P  V  I  S  T  S  S  Y  *  N  P  K  L  I  K  L  *  S  W  L  H  L  S  K  W  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0041L08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11575" stop="11336"/>
                    <exon start="11154" stop="10852"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEIKCRPLCWVEHMSLDNETGLDPSGIRIRPVSGLVAADYFAPGYFVWAVLIANLARIGYEEKNMYMAAYDWRISFQNTEVRDQTLSRIKSNIELMVASSGGKKVVIIPHSMGVLYFLHFMKWVEAPAPMGGGGGSDWCAKHLKAVMNIGGPFLGVPKAVSGLFSAEAKDIAAARFLSLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="44014" PGL_stop="45044"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44014" e_stop="45044"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="44014" e_stop="45044" e_length="1031"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44014" stop="44554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44458" stop="45044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328094" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGCATCCATTGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAAAGTGAAACTCCGTGCAATCGAACAATTTTTGAGATATAAAGTTTGGCTAACTTCTCTGCATTATAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTCATCTATCAACAATTACCCAAATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAAGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACCTGTTGACAATTCGGGCATTGAGCAACAAAATCAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGATGCGGGGTACACATACCCTTCCCTTAATCCTCAAAAAACCTTCCTCATTGATTTTTGCTTCTTTAGCCTCTCCTCGCAATACCTTATCTCGAATCCGGATCAGTTTCTCATCAGTAAACTGCTTTCCTTTAATTTTGTCAAGAAAGAAAGATTTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCTAGTACTTCCAGCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCTCTCCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCACCTCCTCTGTCTTAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAAATATGATGATCCGTATAGACTTCACACTTAACCCCATATCGATAATGTCTCCATTGCTTTAATGCAAACACTACTGCAGCCAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</gDNA_template>
            <first_frame> S  A  S  I  V  F  Q  N  L  E  V  N  C  V  P  L  S  D  M  M  E  S  E  T  P  C  N  R  T  I  F  E  I  *  S  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  I  Y  Q  Q  L  P  K  W  S  H  T  Y  P  L  S  L  E  D  Q  P  R  S  P  L  Q  F  S  P  T  S  I  Q  E  W  A  F  S  E  V  S  L  Q  A  S  G  V  H  T  L  P  V  D  N  S  G  I  E  Q  Q  N  Q  Q  C  H  A  S  S  Y  S  T  K  N  V  A  L  G  H  D  T  S  W  L  H  Q  D  V  *  N  T  L  N  Y  E  P  L  *  E  *  C  E  S  N  H  R  C  G  V  H  I  P  F  P  *  S  S  K  N  L  P  H  *  F  L  L  L  *  P  L  L  A  I  P  Y  L  E  S  G  S  V  S  H  Q  *  T  A  F  L  *  F  C  Q  E  R  K  I  L  P  P  H  R  P  K  I  L  P  S  L  V  L  P  A  S  *  S  H  *  P  E  S  E  P  L  *  P  M  G  V  *  K  P  A  S  E  L  D  F  P  C  S  L  P  F  Y  L  K  H  L  P  Q  H  *  L  S  P  D  D  T  R  *  *  Y  H  S  P  S  V  V  P  S  T  S  S  V  L  N  S  N  L  S  E  *  R  H  T  V  K  Y  D  D  P  Y  R  L  H  T  *  P  H  I  D  N  V  S  I  A  L  M  Q  T  L  L  Q  P  T  P  N  R  G  S  D  N  Y  V  H  A  P  L  I   </first_frame>
            <second_frame>  Q  H  P  L  F  S  K  T  *  K  *  T  A  Y  L  Y  L  I  *  W  K  V  K  L  R  A  I  E  Q  F  L  R  Y  K  V  W  L  T  S  L  H  Y  K  S  P  *  P  E  *  N  E  Q  T  *  S  S  I  N  N  Y  P  N  G  V  I  L  T  H  C  L  W  K  T  N  H  E  V  H  C  N  S  L  P  L  P  F  K  N  G  H  S  L  K  C  P  S  R  P  L  V  F  I  L  Y  L  L  T  I  R  A  L  S  N  K  I  N  N  V  T  L  H  P  T  P  P  K  M  L  L  *  V  T  I  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  S  L  C  K  N  S  V  N  Q  I  I  D  A  G  Y  T  Y  P  S  L  N  P  Q  K  T  F  L  I  D  F  C  F  F  S  L  S  S  Q  Y  L  I  S  N  P  D  Q  F  L  I  S  K  L  L  S  F  N  F  V  K  K  E  R  F  C  L  H  T  G  Q  K  S  S  L  L  *  Y  F  Q  P  H  K  V  I  S  Q  S  L  N  L  S  S  Q  W  A  S  R  N  L  Q  V  S  *  T  S  H  A  P  C  L  S  T  *  S  I  C  H  N  I  S  S  P  R  M  I  Q  D  S  D  I  I  V  L  Q  *  F  H  P  P  P  L  S  *  I  Q  I  F  L  S  K  D  I  L  *  N  M  M  I  R  I  D  F  T  L  N  P  I  S  I  M  S  P  L  L  *  C  K  H  Y  C  S  Q  L  Q  I  V  G  R  I  I  T  F  M  H  L  *  L  </second_frame>
            <third_frame>   S  I  H  C  F  P  K  L  R  S  K  L  R  T  S  I  *  Y  D  G  K  *  N  S  V  Q  S  N  N  F  *  D  I  K  F  G  *  L  L  C  I  I  S  H  L  D  R  N  E  M  S  R  L  S  H  L  S  T  I  T  Q  M  E  S  Y  L  P  I  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  R  M  G  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  *  A  T  K  S  T  M  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  *  I  K  S  S  M  R  G  T  H  T  L  P  L  I  L  K  K  P  S  S  L  I  F  A  S  L  A  S  P  R  N  T  L  S  R  I  R  I  S  F  S  S  V  N  C  F  P  L  I  L  S  R  K  K  D  F  A  S  T  Q  A  K  N  P  P  F  S  S  T  S  S  L  I  K  S  L  A  R  V  *  T  S  L  A  N  G  R  L  E  T  C  K  *  A  R  L  P  M  L  P  A  F  L  L  K  A  S  A  T  T  L  A  L  P  G  *  Y  K  I  V  I  S  *  S  F  S  S  S  I  H  L  L  C  L  K  F  K  S  F  *  V  K  T  Y  C  K  I  *  *  S  V  *  T  S  H  L  T  P  Y  R  *  C  L  H  C  F  N  A  N  T  T  A  A  N  S  K  S  W  V  G  *  L  R  S  C  T  F  N  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0041L08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44167" stop="44439"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADLVIYQQLPKWSHTYPLSLEDQPRSPLQFSPTSIQEWAFSEVSLQASGVHTLPVDNSGIEQQNQQCHASSYSTKNVALGHDTSWLHQDV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0041L08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44478" stop="44717"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKSSMRGTHTLPLILKKPSSLIFASLASPRNTLSRIRISFSSVNCFPLILSRKKDFASTQAKNPPFSSTSSLIKSLARV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0041L08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44450" stop="44680"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSLCKNSVNQIIDAGYTYPSLNPQKTFLIDFCFFSLSSQYLISNPDQFLISKLLSFNFVKKERFCLHTGQKSSLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0041L08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44177" stop="44404"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSINNYPNGVILTHCLWKTNHEVHCNSLPLPFKNGHSLKCPSRPLVFILYLLTIRALSNKINNVTLHPTPPKMLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="47715" PGL_stop="47060"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47715" e_stop="47060"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="47715" e_stop="47060" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47715" stop="47060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346572" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATAATTAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGTCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGCTGTGGCTCCCCGCATGGATGCCTCATTAGAAATAGGCACGTTTCCTCGATTGACTACAGGACCTATAATGACAAGTGATCAGCACAAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTTAAGGGTGCTGAATCTGAGGATCCCAATGATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATTGGCATAGTGGAATGATTCGGTGTTGAGTTTGTAACCTATTAGTTTCAGGGAAATTCCAAAATGTGGTGGCGCTCGTATGTTGAGTGTCAACCAGCACAGGAACCACCCATGACTTGAGCATCATTCTCTAGCTTATTTATGGAGAAGTATATACCCTGGACTTTGAGGGATAGGAAGAGAGATGAGTTCCTGATCCTAGAGCAAGATAGGATGTCGGTTACTGCTTATGAGGCTAAGTTTCGTGCATTATCCAAGTATGCCACCCAGCTTTGCTTCAATCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGATTGAGGTCAGATTTGCAGATTCCAGCCTTACAGGTAGCT</gDNA_template>
            <first_frame> R  *  L  I  R  F  L  L  I  L  A  G  Y  L  I  K  S  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  E  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  *  K  *  A  R  F  L  D  *  L  Q  D  L  *  *  Q  V  I  S  T  N  F  L  V  S  S  *  N  *  N  L  Q  S  L  R  V  L  N  L  R  I  P  M  I  F  W  L  I  V  M  S  C  Y  I  R  L  A  *  W  N  D  S  V  L  S  L  *  P  I  S  F  R  E  I  P  K  C  G  G  A  R  M  L  S  V  N  Q  H  R  N  H  P  *  L  E  H  H  S  L  A  Y  L  W  R  S  I  Y  P  G  L  *  G  I  G  R  E  M  S  S  *  S  *  S  K  I  G  C  R  L  L  L  M  R  L  S  F  V  H  Y  P  S  M  P  P  S  F  A  S  I  H  K  S  G  F  A  V  L  *  R  D  *  G  Q  I  C  R  F  Q  P  Y  R  *   </first_frame>
            <second_frame>  D  N  *  S  G  S  C  L  S  *  R  V  I  *  S  S  P  D  T  S  S  V  F  C  T  S  T  S  G  S  G  S  T  T  C  S  C  C  G  S  P  H  G  C  L  I  R  N  R  H  V  S  S  I  D  Y  R  T  Y  N  D  K  *  S  A  Q  T  F  *  *  V  L  E  I  E  T  S  S  L  *  G  C  *  I  *  G  S  Q  *  F  S  G  *  L  S  *  A  A  T  *  D  W  H  S  G  M  I  R  C  *  V  C  N  L  L  V  S  G  K  F  Q  N  V  V  A  L  V  C  *  V  S  T  S  T  G  T  T  H  D  L  S  I  I  L  *  L  I  Y  G  E  V  Y  T  L  D  F  E  G  *  E  E  R  *  V  P  D  P  R  A  R  *  D  V  G  Y  C  L  *  G  *  V  S  C  I  I  Q  V  C  H  P  A  L  L  Q  S  T  R  A  D  S  P  F  C  E  G  I  E  V  R  F  A  D  S  S  L  T  G  S  </second_frame>
            <third_frame>   I  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  V  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  G  V  Q  H  A  A  A  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  S  D  Q  H  K  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  P  N  D  F  L  V  D  C  H  E  L  L  H  K  I  G  I  V  E  *  F  G  V  E  F  V  T  Y  *  F  Q  G  N  S  K  M  W  W  R  S  Y  V  E  C  Q  P  A  Q  E  P  P  M  T  *  A  S  F  S  S  L  F  M  E  K  Y  I  P  W  T  L  R  D  R  K  R  D  E  F  L  I  L  E  Q  D  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  K  Y  A  T  Q  L  C  F  N  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  D  L  Q  I  P  A  L  Q  V  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0041L08.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47713" stop="47396"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IINQVLAYLSGLSDQVQTPPVFSAPAPQVPGVQHAAAVAPRMDASLEIGTFPRLTTGPIMTSDQHKLFSKFLKLKPPVFKGAESEDPNDFLVDCHELLHKIGIVE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0041L08.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47293" stop="47060"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASFSSLFMEKYIPWTLRDRKRDEFLILEQDRMSVTAYEAKFRALSKYATQLCFNPQERIRRFVKGLRSDLQIPALQVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 54 chains have been computed
$ 
$ memory statistics:
$ 15256 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 2179 bytes was the average size of a spliced alignment
$ 10448 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2089 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 67 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-17 23:37:12
-->
