<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-26 22:40:56"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0044H04-FNxaN/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-PLxsSK/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-PLxsSK/lycopersicum_combined_unigene_seqs" ref_id="SGN-U314763" ref_strand="+" ref_description="SGN-U314763        Tomato 200607 #1 [40 ESTs aligned] arabidopsis/peptide: | Symbol: None | 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative, strong similarity to SP:Q42908 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) {Mesembryanthemum crystallinum}; contains Pfam profile PF01676: Metalloenzyme superfamily | chr3:2608477-2611424 REVERSE | Aliases: F17O14.6(evalue: 0, score=904) genbank/nr: gi|4582924|gb|AAD24857.1| phosphoglycerate mutase [Solanum tuberosum](evalue: 0, score=1078)">
      <seq>ttgctccggtatttcagccctccattccaataaagacccctccttcactcctccattgttttctccactacacacctttttgctctcttctctcttctctcttctataccgcttaagaatttttaagatctgagataatgggtagttcaggagatgcatggaaattgaaggaccatcctaagcttcctaagggaaagactgttgctgttattgttttggatggttggggtgaggctaaacctaatgagtataacgctatctctgttgctgaaactcctgttatggactcactcaagaagggtgctcctgaacattggagattgattaaggcacatggaaatgctgtggggcttcccacagaggatgatatgggtaacagtgaagttggtcacaatgctcttggggctggaaggatctttgctcaaggtgcaaagcttgttgacctagcccttgcctctgggaaaatctatgatggagaaggtttcaaatacgttcaagaatgttttgagaaaggaactctgcaccttattggtctcgtgagtgatgggggtgtccactccaggcttgaccaactgctgttgctactgaaaggtgctgctgagcgtggtgccaaaagaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggcttcatggagaccctcgagaatgatctagcaaaattacgtggacaaggtgttgatgcccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgttatgagaatgactgggatgtcgtaaaaagaggttgggatgcacaagttcttggtgaggctccacaccatttcaaggatcccgttgaggcaattaagaagttgaggcaggaacccaatgccaatgatcaatacttagccccttttgttgttgttgatgataatggaaagcctgttggtcctattttggatggtgatgctgtcgtgactttcaacttcagagcagatcgtatggtcatgcttgcaaaggcccttgaatatgagaatttcgataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgtagcgagaccgttaaatttggtcatgtcaccttcttttggaatggaaaccgttctgggtattttgacgagaaattggaagagtatgtggaaattccaagtgacagtgggattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgaccaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgctattgagcaagtgggtggaattttccttgttactgctgaccatggaaatgctgaagatatggttaagagaaacaagaagggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgcaaatgttgcttcaacctttatgaatctgcacggatacgaggcgcctagcgattacgagccaaccttgatcgaggttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaaggagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcagcagaggttgacattctaccacatggccttgtgatgctatgatggaagagtgtgatatactgttcatttaaatcctgtaatctttcaaggtataacttttgagtttttgtttttcggtgaacaagaattcttaatctttggcagaaatatatattagttgtttgatgctctatatttctgtatctgtcaaagaaatagtatggtccagttgaagttgttatttaaaaaaaaaaaaaaaaaaaaaactcgaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-FNxaN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="12497" stop="6386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12192" g_stop="12011" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="299" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12010" i_stop="11911" i_length="100">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11910" g_stop="11783" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="427" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11782" i_stop="11305" i_length="478">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11304" g_stop="11154" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="578" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11153" i_stop="10982" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10981" g_stop="10778" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="782" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10777" i_stop="9579" i_length="1199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9578" g_stop="9154" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="1207" r_length="425" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9153" i_stop="8850" i_length="304">
            <donor d_prob="0.657" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8849" g_stop="8657" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1208" r_stop="1400" r_length="193" r_score="0.995"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8656" i_stop="8569" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8568" g_stop="8473" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1401" r_stop="1496" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="8472" i_stop="7970" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="7969" g_stop="7814" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1497" r_stop="1652" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="7813" i_stop="7195" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="7194" g_stop="6689" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1653" r_stop="2145" r_length="493" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2146" polyA_stop="2167"/>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-U314763" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>2041</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U314763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12192" e_stop="12011"/>
          <exon e_start="11910" e_stop="11783"/>
          <exon e_start="11304" e_stop="11154"/>
          <exon e_start="10981" e_stop="10778"/>
          <exon e_start="9578" e_stop="9154"/>
          <exon e_start="8849" e_stop="8657"/>
          <exon e_start="8568" e_stop="8473"/>
          <exon e_start="7969" e_stop="7814"/>
          <exon e_start="7194" e_stop="6689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAGGTCTATTGGATTGGATTTCCTTCTTTTTGTGTTAAAGATTCTTGCTTTATGGATTTACGACTTGTTTATTTATCTGGGTTTTTGTTAAAATTAATTATAGGGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGGGTATGCGCTCTTTTCTTATAATCTTTTGTTTGCCTTTTGAAAAAAAAAATATGTTTTTACTTTAGAGATCTTGTAGGTTGTTGAATTTGAAATGTTGTTTTTGGATTATTATCTGTTAAGTTTGTTAGAAATTGGGCTGCTTAATGTTTTAGTGTAGTATAATAAATGCAACCAAGTTACTATGTCAATGCTTCCAATCAATATATTAGGAACAAATAGATCCTTCACATTTTCACTCCTTTATTGGCTTCACAATTGCTGTACCTCTGTACTACTCCCGCATCAGAGTGCAAATAGAATATTTTTTTAATACTTCCTAGTTCTAGCAACAATCGTGCTCAAGGACTTCTTTTTTTATTTGCCTGATTGATTTTATGCAATATCTGGGTTAGGGAAGCTATTTTAACGCGGGTTTGTATTTTTTTGTCCAAAAGTGTAGATTGTTGCTTGTTATCGTCTCTAATGTGTTTCCTTGCAGTGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAGGTAAATTTGTGGCTTTTAGATATGCACCATGTTAGATTTTCTTTTCAATAATGTTGGCTCCTGCACCTAATACTGTCGGAAACTTCTAATGCCCCACATAAAGCATAGAGCAGCCTTCATTTCAGTAATCCATTGACTTGTTTGGTTAATATTATTTTGATTGAATTTCGTCTAGTTATATTTTCTTCGTCTTGGCTGGGTATATCTTTGATGTGGAGTAAGATTATTGGATTAGTTCTTTGATTTGATGCTGTCTGCTGCCTCTTGTCACTGTCTGCACTCTGCTGTCATAATTTGTTTGTTAAGAAGTAATTCGATTCATCACTCTCCAATCTTAGCTTTGTAGTTTGTTTTTTCTACCCCTTCCACTATTTCTGATATCAACATTTCATCTTTGTCATCAACTGTTGTCTCCCAAAGAAATTGGGGCTAACTCAATTTCGAAAGCTAGCTCATGAAGTTGATCAAAAACATAAAGTTAGCTCATGAAGTGAGGAAAAGTACGACTTAAAAGATTACAACCCATTCCCTCACCTGATGTGGGACATTCAGACACCCGGTCCGCTAGGTCTAAACAACTAGAGCTTGAATAACACATATTGGAGGCTCAACATTGAATAACCAAACAGTAGGATGGATCTTGCTTTATACTACACAATGTGATAAGAGATGAATATGGGAATTCTGAGCTTGAATATCCCTGAAGGTATCTTGGTTTAGATAGTGGTGTATACGAAGGTTGGATAGCATCAGAACAAACATCATAGGATCCTCTAATATACTAACGATCTCCCTAACTTATCTAAGTGATATATACAGTAACATCCTCAATTACAGTTTTTTACATAATAATATTCTTGAATAACACCGTAAACACATAGCTGCTTATCAAAAACGAAAAAAAGCGGAGTGATGCATATACTTTTGGGGAACCACCATACTACCTTGACATAGATGTCTTCTGTTGTTTGAGATATAATCTGATTCTTATGGAGTGTTTTCTTCGGTTGCTTCTTTTTACTTTGAGCAGATTAATATGGTCTTGTCGACCTGATGCTTCAGGTTTGTGGTATCTTCTATCCTTCCTTCACTACTGTTATTGATTAGTTGTCATACCAATTTCTTTGCTTTAAAACAAACTATATGTGATTTCAGTTTTCATGCCCTACAGTTAATTATTTGTCATTCCTTTAATGCAGAATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAAC-TTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTATATTTCTGTATCTGTCAGAGAAATAGTATGGTCCAGTTGAAGTTGTTATTTC</genome_strand>
        <mrna_strand>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAG....................................................................................................GGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG............................................................................................................................................................................TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAG................................................................................................................................................................................................................................................................................................................CGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGACCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCAAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAGGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGGAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAGCAGAGGTTGACATTCTACCACATGGCCT-T-GTGATGCTATGATGGAAGAGTGTG--ATA-TACTGTTCA-TTTAAATCCTGTAATCTTTCAAGGTATAACTTTTGAGTTTTTGTTTTTCGGTGAACAAGAATTCTTAATCTTTGGC-A------G-AAATATATATTAGTTGTTTGATGCTCTATATTTCTGTATCTGTCAAAGAAATAGTATGGTCCAGTTGAAGTTGTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-PLxsSK/lycopersicum_combined_unigene_seqs" ref_id="SGN-U314764" ref_strand="+" ref_description="SGN-U314764        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative, strong similarity to SP:Q42908 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) {Mesembryanthemum crystallinum}; contains Pfam profile PF01676: Metalloenzyme superfamily | chr1:3165372-3167871 REVERSE | Aliases: F21M12.16, F21M12_16(evalue: 6e-53, score=204) genbank/nr: gi|4582924|gb|AAD24857.1| phosphoglycerate mutase [Solanum tuberosum](evalue: 4e-67, score=257)">
      <seq>atggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgctattgagcaagtgggtggaattttccttgttactgctgaccatggaaatgctgaagatatggttaagagaaacaagaagggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgctaatgttgcttcaacctttatgaatctgcacggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaagaagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcaacagaggttgacattctaccacgtggcctgtaatgatgctatgatggaagagtgtgatatactactgttcattttaaaccctgttgtctttcaaggcataacttcgagtttttgttttttggtgaacaagaattcttaatctttcactatttgtggcagaaatatattagttgtttgatgctctaaaaaaaaaaatctgtcagagaaatagtatggtccagttgaagttgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-FNxaN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="8841" stop="6393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8541" g_stop="8473" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8472" i_stop="7970" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7969" g_stop="7814" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="225" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7813" i_stop="7195" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7194" g_stop="6697" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="723" r_length="498" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="726" polyA_stop="739"/>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-U314764" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U314764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8541" e_stop="8473"/>
          <exon e_start="7969" e_stop="7814"/>
          <exon e_start="7194" e_stop="6697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTATATTTCTGTATCTGTCAGAGAAATAGTATGGTCCAGTTGAAGTT</genome_strand>
        <mrna_strand>ATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTAAAAAAAAAAATCTGTCAGAGAAATAGTATGGTCCAGTTGAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-PLxsSK/lycopersicum_combined_unigene_seqs" ref_id="SGN-U339028" ref_strand="+" ref_description="SGN-U339028        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative, strong similarity to SP:Q42908 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) {Mesembryanthemum crystallinum}; contains Pfam profile PF01676: Metalloenzyme superfamily | chr1:3165372-3167871 REVERSE | Aliases: F21M12.16, F21M12_16(evalue: 4e-11, score=65.9) genbank/nr: gi|4582924|gb|AAD24857.1| phosphoglycerate mutase [Solanum tuberosum](evalue: 5e-11, score=71.6)">
      <seq>gaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgtaggtgcgttgctgtggcatatcttctggtgcctttgtttagtatttttgccgaataaattgctaatttgctcaaaatgtctgattattatagagtcttctgctatatttgttaacattgtaaagcctggaagtcaattggcctcttgtattttaagaaataaaataaaatggtgaattaagaggttagttggaagtaaatatgccattctaaatgataaaatattctgcaagaagaaacatctaatatataagagtttgaattttctttgaactagtattaacaactccggttcttgtttcaacagcgagaccgttaaatttggtcatgtcaccttcttttggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-FNxaN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="9554" stop="8510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9254" g_stop="8810" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-U339028" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9254" e_stop="8810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAAT</genome_strand>
        <mrna_strand>GAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-PLxsSK/lycopersicum_combined_unigene_seqs" ref_id="SGN-U322674" ref_strand="+" ref_description="SGN-U322674        Tomato 200607 #1 [7 ESTs aligned] genbank/nr: gi|34899876|ref|NP_911284.1| OJ1714_H10.21 [Oryza sativa (japonica cultivar-group)] gi|22831082|dbj|BAC15944.1| unknown protein [Oryza sativa (japonica cultivar-group)](evalue: 3e-44, score=181)">
      <seq>atcaaatggacaatggaaaatatggagaaaggccaatgattttggctatgaaaggccatccagggacaggtaagagcacacttgcacaatccatagctaaaaccctaaaatgtcctcttatagacaaagatcacttcaaagattgcactaaaccacttcaacaaatcactaaagccacaaaactcatcaatgacctatcatacgatgccatgtggcgagtcgcctccgctcagctagacttaggtctgagcgtggtgatcgactcaccactctcacgtcgagctcaccttgaccggatcattgagatcgcgaatcatagtggggctcaggttgttgtagtggagtgcaagccgagggatcaagccaagtggcgtaggcggctcgagctgaggggtgagctggtggaatatggctcaagctggcataagccatccacgtggcaagaaatggagaagttgttggaagggtatgaagggtgttgggattatgatgttggggtggaggttccaagacttgttgtggatacaacatgtgctaatggggttcaacaagtggtatcaaacgtgttggagtttgtttctaatgcatgtggtgaaaaaaagaaaaagttgtatgttaattaggaaattatgagaccgtttgatagagtatatattaataatattgaatttagttatgttaaaattacttttttctaatatttaatttgatgtattaaaaatcgttctataactactcatgcttatcaatgtacaattatactagcctgtgtattgctaatagtgtataactaatatatttattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-FNxaN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="16156" stop="14746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15856" g_stop="15042" g_length="815"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="815" r_length="815" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-U322674" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15856" e_stop="15042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATGGACAATGGAAAATATGGAGAAAGGCCAATGATTTTGGCTATGAAAGGCCATCCAGGGACAGGTAAGAGCACACTTGCACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGTTGGGGTGGAGGTTCCAAGACTTGTTGTGGATACAACATGTGCTAATGGGGTTCAACAAGTGGTATCAAACGTGTTGGAGTTTGTTTCTAATGCATGTGGTGAAAAAAAGAAAAAGTTGTATGTTAATTAGGAAATTATGAGACCGTTTGATAGAGTATATATTAATAATATTGAATTTAGTTATGTTAAAATTACTTTTTTCTAATATTTAATTTGATGTATTAAAAATCGTTCTATAACTACTCATGCTTATCAATGTACATTTATAATAGCCTGTGTATTGCTAATAGTGTATAACTAATATATTTATTAATTAGATTTT</genome_strand>
        <mrna_strand>ATCAAATGGACAATGGAAAATATGGAGAAAGGCCAATGATTTTGGCTATGAAAGGCCATCCAGGGACAGGTAAGAGCACACTTGCACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGTTGGGGTGGAGGTTCCAAGACTTGTTGTGGATACAACATGTGCTAATGGGGTTCAACAAGTGGTATCAAACGTGTTGGAGTTTGTTTCTAATGCATGTGGTGAAAAAAAGAAAAAGTTGTATGTTAATTAGGAAATTATGAGACCGTTTGATAGAGTATATATTAATAATATTGAATTTAGTTATGTTAAAATTACTTTTTTCTAATATTTAATTTGATGTATTAAAAATCGTTCTATAACTACTCATGCTTATCAATGTACAATTATACTAGCCTGTGTATTGCTAATAGTGTATAACTAATATATTTATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-PLxsSK/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335078" ref_strand="+" ref_description="SGN-U335078        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 1e-06, score=56.6)">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-FNxaN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="26761" stop="25562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26461" g_stop="26286" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26285" i_stop="26208" i_length="78">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26207" g_stop="25862" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="515" r_length="342" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-U335078" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26461" e_stop="26286"/>
          <exon e_start="26207" e_stop="25862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCAGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGGTGCCACGTTCCGGTATCAGGATAGAATATGGATCGGGTGTCACGTTTCGACACCAGGATAGAATATGGATCAGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAAGATAATGAATCTTGAAAGATGTTAATATATTCAATCTAATGAACCGAAATCCCAAATGAGCATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAG..............................................................................GATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATAT--GGATCGG-GTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAAT-AAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-PLxsSK/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330331" ref_strand="+" ref_description="SGN-U330331        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT5G08560.1 | Symbol: None | transducin family protein / WD-40 repeat family protein, contains 7 WD-40 repeats (PF00400); similar to will die slowly protein (WDS) (SP:Q9V3J8) (Drosophila melanogaster) | chr5:2770875-2774673 REVERSE | Aliases: MAH20.12, MAH20_12 (evalue: 5e-22, score=99.8) genbank/nr: gi|15242311|ref|NP_196473.1| transducin / WD-40 repeat protein family [Arabidopsis thaliana] gi|9759350|dbj|BAB10005.1| WD-repeat protein-like [Arabidopsis thaliana] gi|15450910|gb|AAK96726.1| WD-repeat protein-like [Arabidopsis thaliana] gi|17978717|gb|AAL47352.1| WD-repeat protein-like [Arabidopsis thaliana](evalue: 3e-20, score=99.8)">
      <seq>ttcacaggtttatatatggcacaaaggctcaggtgaccttgttgcgacactggctggacattcaggggcggtgaattgtgttagctggaacccaacaaatcctcatatgctggcatctgcgagtgatgatggtacaattcgtatatggggcgataatcgagtaaacacaaagcaacatgacactgctaatggtgtgaactactgcaatgggcgaagttgaactctgagatgcaaaagggcagcgtgtaacgttacaaatatctttcatcgctatcactggtttctgtgtatattctgtatgttcatgtcgaatcaacatttatgacaaacaagaatgtgaaatttgcattcagtccattaataaatcgtgtactctttcctccatattttagattttcttttccatttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-FNxaN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="29178" stop="28173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28876" g_stop="28474" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="410" r_length="403" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="411" polyA_stop="432"/>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-U330331" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28876" e_stop="28474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATATATGGCACAGAGGCTCAGGTGAACTTGTTGCGACACTGGCTGGACATTCAGGGGCGGTGAACTGTGTTAGCTGGAACCCAACAAATCCTCATATGCTGGCATCTGCGAGTGATGATGGTACAATTCGTATATGGGGCGATAATCGAGTAAACACAAAGCAACATGACACTGCTAATGGTGTGAACTACTGCAATGGGCGAAGTTGAACTCTGAGATGCAAAAGGGCAGCGTGTAACGTTACAAATATCTTTCATCGCTATCACTGGTTTCTGTGTATATTCTGTATGTTCATGTCGAATCAACATTTATGACAAACAAGAATGTGAAATTTGCATTCAGTCCATTAATAAATCGTGTACTCTTTCCTCCATATTTTAGATTTTCTTTTCCATTTAA</genome_strand>
        <mrna_strand>GTTTATATATGGCACAAAGGCTCAGGTGACCTTGTTGCGACACTGGCTGGACATTCAGGGGCGGTGAATTGTGTTAGCTGGAACCCAACAAATCCTCATATGCTGGCATCTGCGAGTGATGATGGTACAATTCGTATATGGGGCGATAATCGAGTAAACACAAAGCAACATGACACTGCTAATGGTGTGAACTACTGCAATGGGCGAAGTTGAACTCTGAGATGCAAAAGGGCAGCGTGTAACGTTACAAATATCTTTCATCGCTATCACTGGTTTCTGTGTATATTCTGTATGTTCATGTCGAATCAACATTTATGACAAACAAGAATGTGAAATTTGCATTCAGTCCATTAATAAATCGTGTACTCTTTCCTCCATATTTTAGATTTTCTTTTCCATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-PLxsSK/lycopersicum_combined_unigene_seqs" ref_id="SGN-U316581" ref_strand="+" ref_description="SGN-U316581        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT5G08560.1 | Symbol: None | transducin family protein / WD-40 repeat family protein, contains 7 WD-40 repeats (PF00400); similar to will die slowly protein (WDS) (SP:Q9V3J8) (Drosophila melanogaster) | chr5:2770875-2774673 REVERSE | Aliases: MAH20.12, MAH20_12 (evalue: 4e-141, score=498) genbank/nr: gi|15242311|ref|NP_196473.1| transducin / WD-40 repeat protein family [Arabidopsis thaliana] gi|9759350|dbj|BAB10005.1| WD-repeat protein-like [Arabidopsis thaliana] gi|15450910|gb|AAK96726.1| WD-repeat protein-like [Arabidopsis thaliana] gi|17978717|gb|AAL47352.1| WD-repeat protein-like [Arabidopsis thaliana](evalue: 4e-139, score=498)">
      <seq>gccaaacaactctttcctccatttctctattcacaagttctccattaacacaaatactcaaatctctctacaagattcttactctcaacaatcaatcatataccttttttagctttcaatcgactgcttgtttacccacctaatctactagtcttagcttaccgacaaacgagagggaataaaagaatacaatttgggataaaaccatttgcgatttgctggtttttcaatcagtgatttaggcctactattccaacttttcagttttgtcttcctcctgctgttatatatgggctgacgcgtttgtttcatgggagctgaggacgatgatgaaccaccatcaaaacgtgtgaaggtatcctccagtcaattggtagatatttctgacaggacatttgttagagatcctgtaagttgttcattgggtgactcgatggctcgacccctgactcttcaaggggacgatgaggttgttggtacaaaaggagttgtcaagaaagttgaatttgttcggattataactgaggcattagattctcttggttacaaaaagactcgggccttactagaggaagagtcagggatacccttgcacacttccgtcgtaaatttgtttatgcagcaaattcttgatggtaaatgggatgaaagtttaaacacattgcgagagattggtctggtggatgaaaaaattgtaaagttggcatcttttgtgatattggagcagaagttttttgaattgttgcacaaggaaaaagttatggatgctctgaggacactgaggggcgagatctcacctctttgcataaacaatgatagagtccatcagctttcgtttttcattatatcaccttctcagcaggttcttactggggtatcaggtcaaggcacagcgagagtaaagtcacgtacagagctactagaggaattgcaaagattgcttcccccaacagttatggttccagaaaagagattggtacatcttgttgaacaagctcttgacttgcaactagatgcttgtagatttcacaactctgtggttggtgaaatgtcactgctcagtgatcatcactgcggaagagatcatattccatctctaacaatgcagatattacatgaacataaagatgaagtctggttcttgcagttttcccataatggaaagtacttagcctcgtcatctgccgattttgccgtaattatatgggaggtcaaattggatggcagtgtctgcatgaaacacagacttttgggtcacgagacatatgtctcgtatatatcatggagtcctgatgaccatcagcttctcacttgtggtgaagaggaagctgtcattcggtgggatgtcgagtctggtgtacgtatacacacttatgagaaaaaatttgttaagtttatctcatgcggctgggctcctgatggaaaaaggatattctgtggtgtaactgacaaaagcattagcatgtgggatttggaagggaaagagcttgagtgttggaaaggccacagggctactagaatatcggacttggggataacaagtgatgggaagcatgttatctctgtttgtaaagaaaatatgatagtattagttggatgggaatcaaaagtagagagagtaattcaggaggatcaggcaataacctcatttgtattgtccatggacagtaagtatgtgttggttagtctttccaaccaagaaattcatctctggaatatcgagggaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-FNxaN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="41936" stop="30081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41638" g_stop="41404" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41403" i_stop="39464" i_length="1940">
            <donor d_prob="0.016" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39463" g_stop="38591" g_length="873"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="1108" r_length="873" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38590" i_stop="34657" i_length="3934">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.713" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34656" g_stop="34555" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1109" r_stop="1210" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34554" i_stop="30901" i_length="3654">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30900" g_stop="30381" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1211" r_stop="1730" r_length="520" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-U316581" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41638" e_stop="41404"/>
          <exon e_start="39463" e_stop="38591"/>
          <exon e_start="34656" e_stop="34555"/>
          <exon e_start="30900" e_stop="30381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAACAACTCTTTCCTCCCATTTCTCTATTCACAAGTTCTCCATT-ACACAAATACTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGTGTATGTATCCATTTTGATCTGAATCTTCAAATTGCTTTATGGGTATTGCAGATTCTTTTCTAATCTTTTGTTGATTTTCTGGTAATCTTTCTTTTCTTTGCTTGTCTCTTACGGAAATGTTTTCTGGGTTTGGTTTGATTCTTGTTCTTGATTTTGTTTGTTGGATTTGTTGAATGGTGTTAATGGATTATCTAAAGTTTGATTTTTTTCTAGTTGGGTTTTGAGTGGTTATTGTAGTATATGCTTGTTTTACAAAAGAGAATGGTTTGCAGAAGTTAAGTTTAGCCTATTTACAACTTAAGTACTAATTAGACGGCAAATGCATTTTGAGTTGAATTACCTTTTGCAGAAGTTTACTTAACAGCAGATACATTTACTAACTTAGTTTGTTATTGGATGCTTTTAGTACCGATTGGATCTTTTCATCAAGATCCCTAGTTTGTGCTGTTGGTGAGAGGTATGGTTTAGATTTGCTGTAAATGTGATTGCATTGGAGTGAAATTATCCTTAATTAGTTCATCTTTGATCATAACAAGTTTAAGAGGCTTAAGACTCATCACTATCTTGTGCTATATGTGTATCTTACTATCATACTTGATCATAATAGGTTTGAGGGGGTTCAGTGGGTGCGTGCTACATCATATTTTGCTAGGGGAGGATTGACTTTGTTTCCAGGGTCGTGATATGATCGATCCATGATCCTGTAGAGAAATAGGGTAAACCTTGTTTGTTATTTGGAAAGTGTGATTAACTTGTGTAGTCAGCTCTTGCAAATGTTTGCAACTAACGAGTGAAATTCTGTTGATTGCTTCAGCTTTATTGTGGCCCAATTTATGGCCTTCAGTCATATTCACATATTAGTAAGAAGATTAGATTCTTCTCATTAGTGGCCAGGCTATTTTGGATGAACTATTATGTCGATAGTGGTAACATTGATGTGTTTTCTTTTCTATTGAATTTCGAATATCAAAGATCAGACATATCTTAGAGTTGAATTTATGGATTCATTTACAGTAATTACGTAGCTTGAGTGTTGATTAATGTTGAACTTGCGTGTTACCGTGCACACTGGTAAAACATTTGCATTTTGTGTGATCTCCTTCTGGCAGGAATTGAAACTTCTCTGTCTGCATCAGTTCTCTTATTTGGGAGGATTATTATTAGCGGGTAATGCTGTTTGATCAGGAGGCTGGTATTGAGAAGACCGAATAGGTTATTCAAAGAAAATGGTAGCTAATGCTCCTTCGATGTTAATGTGGACTTAGCGAGAGCAATGTACTAGGCAGGCTGTTCAATGGTTCGATAACTAGTAGTATTAATTTGTGATGTCTATTTAGGTCGTATGTTCATTAAGCTTTTTAAATTCAGGCTGACACCGTCCTACCCTTCCTACCTCTCCTTTCTTGAATAATTGTTAAAAAGGAAGTTTTGGTGGAGCCCTTTATGTATAGAGTTTCAACTTAAGCAAGCAAAACCGATTTGTAGCATAAGAAATTATTGGTGTCTGGCATCAGGTCCAAAATTACTGGTTGCACTTCGTGATGGTATTTTATCTGGTAATTCTGAATAATCTGTCTGAGGTGTTGCTGTATTTGTTGCGAATCTGTCCAAGCAATTTTACTTTCATATATATTATTGGGTACTTCAGCATGTGATATTAGTATCAGGCGATGCTCTTGCTAAATGCTGGACAATTTTCATCAATAAAATGATTACGTATAAAAGAAGATTAGCCTATACTTTTGTTATTTGCAGTTTTTTTCCTTAAACTCTCTGTTTTGCTCATTGTCTCATTACTATCGTTCTCACTTTCTAATCGTAGATCATTGAAAGTGGATCCTGCAGATTACCTTCTTTCTCTTTTTTCTGTTTCTATTTTTATTAGTTTTATGTTATTTCCTTTTCTGCTGTTACTTAGAGTCTCCATTTATTAATTGCAGGATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATGAGGTTGTTGGTACAAAAGGAGTTGTCAAGAAAGTTGAATTTGTTCGGATTATAACTGAGGCATTAGATTCTCTTGGTTACAAAAAGACTCGGGCCTTACTAGAGGAAGAGTCAGGGATACCCTTGCACACTTCCGTCGTAAATTTGTTTATGCAGCAAATTCTTGATGGTAAATGGGATGAAAGTTTAAACACATTGCGAAATATTGGTCTGGTGGATGAAAAAATTGTAAAGTTGGCATCTTTTGTGATATTGGAGCAGAAGTTTTTTGAATTGTTGCACAAGGAAAAAGTTATGGATGCTCTGAGGACACTGAGGGGCGAGATCTCACCTCTTTGCATAAACAATGATAGAGTCCATCAGCTTTCGTTTTTCATTATATCACCTTCTCAGCAGGTTCTTACTGGGGTATCAGGTCAAGGCACAGCGAGAGTAAAGTCACGTACAGAGCTACTAGAGGAATTGCAAAGATTGCTTCCCCCAACAGTTATGGTTCCAGAAAAGAGATTGGTACATCTTGTTGAACAAGCTCTTGACTTGCAACTAGATGCTTGTAGATTTCACAACTCTGTGGTTGGTGAAATGTCACTGCTCAGTGATCATCACTGCGGAAGAGATCATATTCCATCTCTAACAATGCAGGTTAATTCACATTAATAATTGGGTGTGCTTTTGATATACAAGCCTTTTGATTCTGCTCTTGATTGTTCGAGTCTGACATGTTCAAGAGAAACTTCATTTTGTGTCTCACACAACAGACACAGGTTGTGTGAGGCTTTGATCTACAAATTACTGGACCCTAGTCTTACACTTTTGGTCCACAAATTTGTGAAACAAAAAGAATCCCCACACAACTTGTGTCAGTTGTGTGAGACACAAAGTAAACTCTTTCCATGTTTCGTCTTGCAATCATGCACTAGTTTGTCCTATCATTATCCGAGTCAATAATTAGTGGAGTTGAATGAATATGATGGGAAATATTGATCAAGTTTTGTTCCTTTGCATTCTAAACAAATGTCATTGTTGTTAAAAGAGTCACCTCTTCTATTTTATGTCAATTATTTGAATGACATATGTTGGCATTAGGATGAAAAGCATTCTGAATTCATGCTTTGTTTCATTCAACTCTTTGTGGTTGAAGGTTTTGCCAATTTTTGCTTATGTTCTTTTGAAAGGCTTGTTTTGATTTGCACCCAAGGGTGTGACCTAGTGGTCATTGACTGGAGACAAAAAACACTAAGTTCCCATCTGTCCTAGACAAAAAACAAAGCATGAAATCATTTTCTTTGTTATGTATTTGTCATTCATGCTTATATTTATTAGTCTTGGATTGATATTTGTACTTTTTCTCCCTTCGTGCCCTTTTTCATTAAAGCCCACACTTCTTTTTGACAAAGGTAACAAATTTGTATATAGTTTTTCAGCACTAAAGACTGGGATCCCAAATTTAGACCGTGGAGCTACATACAGTTGATAGACTCAAAAAATCTTTAAAAACACTAGATTCTACTTCATCTTACAAAGAACCTAGAATACTGGAATAGTTACATGATCATTTACATACTCAGACTACACCAATAGCAAAAAGTGACAAGACAGCTCATTTTTATCCTATGTAAAGGCCCACTAATGCTCTCAAATTTCTCTCCTTCCATATGGTCCACCAAATCACTGTTGGGACAATTCTCCATCAGCTTTTGTCTGCACCGCCACTACCTTTATTGTTCCAACTTTCTATAGCCCGTCTTGCCCTTTATGGTATGGTCCTACTTATGCCCCTAAAGCTGGTAAATAGGTTCCAAAGTTGTCTAACCACCCTGCAGTGAAGAAACAAATGGTTGATTGTCTCTACCTGCTTCTCACAGAAACTGTCTTGGAGACATATGTATTCCCCTCTTCTTGTGATTCTCCTGAGTTAGTTTTGTCTCTTTTACTACCAACCAAGTAAAGATTGCCTCCCTATATGGAATTTTGACTTTCTAGATAAGCTTCCAAGGCAAAAATTTGAGTTGAGTCCCTATCTGGTTCAGATTCTTGTAGGCAGAGCTAACTGTGAAAATACCTTTGCTATGATACATGAGTGTCTTCTCCCTCTTGCAATCCTCCAAATTGGTCTAGGGTGCCACAAAATTTAGCTAATCTATCCATATCCCAGTCTTGCATCATCGTTCTCTATGTTAAGTTCCATCCATGGATGGATCAAACTCCTTCAAAATGGCCTGTTGTTGCTGATTCAACAGATAAATATCTGAAAAAGTAAGAACTGCTTGAGGCTGCCATTTCCTAACCAGCTAATCCTAAACAAAATCTTCCTTCCATTGTTTATACTGGTCTCTGGGAACGTATATTGCACATTTGTCCCTTATTATTATTATTAATATTGTTAAAGCAGAAAGCTAATCAGTACACATTAACCCATGTACAAAATAATTCATAAAATATATACGAGTCAGACATCAGCAAATAATGAAGATACACAAAAATAGTATAAAAAAAGGAAGAAGATTAAGATAAGGTAAAAAGTTAACCTATGATATTGCTGATTGTAGTATGGCAAGTGGAAAAAAATAAAGAAAGTGAAATGTGATACAAAGGAAACAAATTGATATGTGCACGTACTGAGGAATATAAAAAGACAGCAACAATATCTTTACCAATGTAGAAGAGGAAAGAACAAAAGATGAAACGAACTTCTATTTCATATACATAACTTCCATGTCTTTCATATTCATAACCTTCAAATATTTAATGTGTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGATGATGGTGATGATGATGATGATGATTGTATATAGTTCTTTCAATGAAACTTTGCCACAAAATTCTGATTGATCTCCACAGGTTCATACCATAGGGAGAAATTACTTCCTTAGTTGTCTAGTACTCTAATTTTCTCATACTTGGTCTGAATTACTCTTTAACCCATTTAGCCTGCTCCTCTTTAGGAGATCTCCACAACCACTTCATTATTAAGCTTTTGTTCTATTTCCTCAAGTTTATAATGCCTAACCCATCTAGTTTCTTTGAAAGAACTACAGTCTTCCATTTGACCTAATGAAATCCTTTGTTCTCCTTCTTACCATTCCACAAAAACTCCTCCTTAAAGCATCAATTCTTTCTTCTACCCTAGTTGGGAGAGGAAAAAATGACATCTAGTACGTCGGTAGAACATCTAAGACTGAGTGATCAGGAACAATCTTCCACCTCAGACAGATACTATGCTTTCCATCTGGATAGTCTTCTTTCACATCTCTTCACCACCCCATTCAAAATCTCTCTGGATTTGCTTTTGGCTCCCAAAGGCATCCCCAAATAAATTGTTGGTAGTTGACCTATTTCTCCTCCCAAGATCTCTGGCAGATTTACATTCTGTTCACATCATTAATTGGAAAAATATGACCTCCGATTGATATGGAGCCCAATAGTTGCTCTGATTAATCTCCTGGACACACCCAAACAATTCTTACCATTATGCTCCCTCTCAAAAAGAATTTTTTATTAATAATGCAACAAGCTAGTGTCTTCATGGCTCCACAGAAAAAGAAACTATGCAAATTGCTTCAATGTATCTATATGTCACAAGTACATATATAAACTCTCTAGAAGAATAGAATCTTATGTAATATTTTGTTCAGCAAAAAACAAATGAAGAACAGAGATTTGACTCTCCAGCTTTAATGCCGTGGATCTTCAAAGTGCCAGCTCCTTTTGAGTAGTTATTGACAGCGGAACTCTAACTAAAAGCATATTTATTGCAGCCTCGGTCCATGAGCAAATTAATATGGGGAATGCATGCTGTCCTATCATAAGCTTGCTAATGAATGCAGTTTTTATTTACTAATTTGAAAAAAATGAATGCACTTTTATTTTTATGTCCTAGAAAGATGCTGGAGTTAATAGGTAAGCACTATTGATTTCTGGGGAGCTTTGTGATCTTCAGGTCCTTAGTGAGCTTGTGTCCACCATTTCATGTGGCTTTAGTCACAACAATATGAAATGTTTCATGGATTGTTGCCAAACTTTTGAATCAATGAAAGTCAGTACCTGTAGGCACAACATCACATTTTTCGTCTCTTGTGAAATTGGTCTCCCTTTCTCTTGTCATTATATCTTTTTTGTGTAAACAAGTATGTTCTTTTTTTCCTCTAAATTTTGGCTTTGTTTGGGACTGGGGTGTAACTTTTGTTTTGTTCATGTTGTTTATGCCATTTCAAATTGATCTTATATTTGGGAGGTTTAAAGTTTACCAGGAGATGTGGTTGGATCCACTGTGGTTTAAGTGAAAGCAGAAGAAATTGCCTTGGGGTGGGGTGGAGGGGTTAGTTAAAGTGCCAAGGAGTTGTAAATGTGCTTTGATAAAATTGAACTTCACTGGCTTTCTGCTTGTTATCATTTACCGACGAGCTGTTATTTTATAAGTCGTTTTAGAGCAATCTTTGACAGTGGAGTCTGATTTCTTGCAGATACAATATGTTAATCACCTTAAACGCTAATTGTTTCTTCATTGCTTCTACTGCACCAGATATTACATGAACATAAAGATGAAGTCTGGTTCTTGCAGTTTTCCCATAATGGAAAGTACTTAGCCTCGTCATCTGCCGATTTTGCCGTAATTATATGGGAGGTATTTTAAGTTCTCTTTATTTTGTTGTCATATCAGTAGTTGTTTTTCAACTTAGATCAATTGCTACTTTTACTTTTTATCGAATATCTTTTCCTTCATTCTTGCATCTTAGTCACAGCTACCTCCATACTTGATAGGGTCTTCTACTTCTGATTTGAAGGATTAGTAACTTGTGTGCTTCACAGTCTCATGGAGTGCCTCATATGGGTGCTCAAATTTCTGTGGTTTCCGCGACCTCGTGTAGTAATATATTTGAACACAAGGACAGCAAATTATCTGTGGAAGTGATATCAACCGGTTGAGATTAAGGTTTATTCTTTTTTTTTTGGTGGCATATTTCCATTTGATCAGGTGCTTAGAGGATATTTTTAATTTGATCATATATCAGTTTAAAAAATAAGGATATGCATGCGATTTATAAATTCCTATTTTTACAGAAAACCCTTGAATTATTAACGGAATGAGATCGGCTCAAGTGAAATTGAATGGATATAAAGGATTCATATAGCACCCAAGGGTGTGGCTAAGTGGTCAGTGAATTGGGCTGAGAACCATGAGGTTCAAATCCCAACAGACACAAAAAAAAGAACTAGGTGATTTCTTTCCCTCTACTCTAGTCTTGGTGGACAAAGTTGCTTGATACTTGTTGCTGGTGGGGGGTGGCAAGGTCGAGGTGTGTGCAAGCTGGCTAAGACACCATGATTATCAAAATAAATAAATAAAGAATTCATATAGCCTAAGTAGGATATTTCTTCCCATGAGGTCTCAGGTTTCAATTTGAGGCAAAAATTGCTAAGTGATTTTTTCCCATCTGCTTGAGCCTTGGCAGGTAAGCAGGTACCGATGTAATAGTCTTTTCCCATCTGCTTGAGCTTTGAGGTGTAATTATTAGAAAGCACCACCATAATTGCAAGTTGTAGATACTTCCACGGGAGATATATTAGGATTGACTGTAATCAGATAGTTTGTGGCCCTATTCGTCCAAGTTAACCACCCATACACTGAATTTTAGGGAGTCCAACATGCATATATGTATGCGGACCAAGACAGACACAGAGACGAATCTACATGTCTACATCTAACAGTGAAGTCTCCTCATCCTTCTGATTTCGGATCCACATGATTTGCAGCTTATTAAAATTAAACTTATCAAGAATGCCACTTTGCATTTTGTCTCTAAAAAAGAATCCTACTTTGCATGGTCTCTAAAAAAGAATCCTACTTTGCAATCTGAAGAAAAGTAGTCTGCCATCGTTTGAGTGTTAAAAGCCCACTGCCTTCATACTTGCCATATAAAAATAGAGTCCAGTGACTACCACTGACACATTTGTGGTTTCTGACTGTTATTGTTGTTAAACTCAAGTAGGACTGGGATGTATGATTCAATTTTTATGCTGTTATGTTGACAGCCAATTGGAACTTCCTTACATTGACCAACTATGCCGCAGTTAATGTTTCTGTTGTGTTATAAGTGTGATTATTATTATATTTCCTTGTGTTTCGCCAAGTTCTTATGGTGTAATAGGAGAGTTTGTATTAATTATTATTATGCATGGACTTGTACTTTGCACTAAATAATTTTTAATATTGAATATTTTGATCTTTTCTACTATCAAGCAAAAAAGAGAGTACTTGTTGTAGAGCCAGACAGAATAAATGATCAAAGTAATATGATTTTGCTTTCCTTTTCCTTTCTTTTTTGTGCAACAAAAAATAGATGATATCGAAGTTATTACTAATTCTTTTTTATTTATTCCCACTTGTTTCTGCTACCCGCATCGGGGTCCCGACTAATCCATTGCCGCATAAGGCCTGGGTGGGTTGGGGGGGTGAGGGGAGTGCTCCCTACCGTGCCATACCCAGGGCTCGAACCCGAGACCCCTGGTTTAGGATGGAGGGATTCTATCCATCCCACCATAACCCTACTCCTTGGTGATAAAGCTGTAACTGTACTTTTGGTTGTACTTCTTTCACAACATTCCATCTAAAGCTTCAAACTATATGAATAATGCCTCTATTGCCTCTTTTACTTGCCCTCCCCAAAAAAGTCAGTTTCACACTTATTTTATATATGGCCTGAAGTGTTAGTTTCATGGGACGTGTTTAATGTATCCTAATTAAATTTTGCAGCCTCATCGTTATAAAGTTACTACTCTCTCAGTTTCTATAGTTTTGATCCTATTTTACTGAGCGCGGAGTTGACAAATGAAGAGACTTCTAAAATTGTGGTCTTATGTAAACCGCGATTATAAGACCTTTGAAACTTGTGGTTTTAAACGTGCCATGACAGTTGTGTAGCTGTAAAAGCTTGTCATTAAGGGTAAAGTGTGAAGTGTAAGTTACCTTCTCAAAAAAAGGAGGAAACTTTTAAGTTAAATAATCTCCAAATTTAGGAAGGAGCCAGGAAATAGAGTCCATCACAACTGAAACGAATGGAGAATATGTATTGGCTAGAGGTATTCATGTTGCCAAATAGTTATGGATGGTATGTTAAGAGTTAAATGTGCATGTCTATGAAAGGGATGAGTAAATTACAGATCTGGTGGACAGATTTGCAGAAGCTGCACAAAAAAAATAAAAAATAAATAAAAAAATAAGAGCCTTGCTATTACTAAGCTGCCTGTTTGCCTTTTCTTGCATTGAAGGTTTATTGAATTAATAACAAACCTTTGGGTTGAGTGGAGGCTTTCTAAAACTTAATGTGGGGTTTATCATTAGATTTTTTGACCTAAGACGACAGTGATGTTTAACTGATATTTGGCACTAAGCATTCAATTTGATGGGAAAATCAGTTGAATACAAAATAATTGTTAAATTTATATTCTAGCTTTAGTTCCATTTTAGTTTGTCCTTACTCCTTCCATTCCAGTTTATATGACGCTCTTTCCATTTTGGTGCATACCAAAATGTTTGACACCATTCTGTTTTATACAACTTTCAATAACTTTAAGGATTCATTGAACTACTCAGACTTCAACTTCGATGTGATGTTTGCTTGTTTTTTCAACCTCCACTTTAATATTCTCTTCCATTATCAATAATACATTAAATAAGTCAGATTACATATTTCAACTCCGTGCTGAATCAATCACCCTTACATAAAATGAAATGGGTGGAGTAGTCATTTCATAGAGTGATATTCTTCCTTTTTCAAGTTTAAAGAGAAACAAACACATGGGAGATTTCCATGCCTTAGAAAACATGAAAGCTGACAGCTAATGATACTTCACCATATGAAGAATTTTGAACAAACTGTTGAGAAAAGAAATTTTAAGAGAGTTCCAGATGTCTTGGTGTGCTTTATTCAACTGGCTTTGTAAGTTGGAAATCAGAATTTAATGTATTTACTCCTGAACAATGCTTCTTTTTGCTAATCAAATGACTAGTATTGGAATATTGAGTTCATTTCTTCTTCTTTTTGGTGCTTGAATATGTTTTGGAGGAATATGATATGCAAGGTTCATTCTCCAAATTTGATCCTAATATCTGGTGCATTTCATGTTTGAATTAAATAGAAAAAGATTGTGTTTATGTGGGATTGGGGGGAGGGAGTGCTGGGAACAAAAGAAAAGATAGCTGTTAATTATGAAGATTTGAAGTAATCGGGATAATAGATGGAGTGTAAGTTCATCCCTTATTTTCTGCTCTTTTCAGGTCAAATTGGATGGCAGTGTCTGCATGAAACACAGACTTTTGGGTCACGAGACATATGTCTCGTATATATCATGGAGTCCTGATGACCATCAGCTTCTCACTTGTGGTGAAGAGGAAGCTGTCATTCGGTGGGATGTCGAGTCTGGTGTACGTATACACACTTATGAGAAAAAATTTGTTAAGTTTATCTCATGCGGCTGGGCTCCTGATGGAAAAAGGATATTCTGTGGTGTAACTGACAAAAGCATTAGCATGTGGGATTTGGAAGGGAAAGAGCTTGAGTGTTGGAAAGGCCACAGGGCTACTAGAATATCGGACTTGGGGATAACAAGTGATGGGAAGCATGTTATCTCTGTTTGTAAAGAAAATATGATAGTATTAGTTGGATGGGAATCAAAAGTAGAGAGAGTAATTCAGGAGGATCAGGCAATAACCTCATTTGTATTGTCCATGGACAGTAAGTATGTGTTGGTTAGTCTTTCAAACCAAGAAATTCATCTCTGGAATATCGAGGGAACTG</genome_strand>
        <mrna_strand>GCCAAACAACTCTTTCCT-CCATTTCTCTATTCACAAGTTCTCCATTAACACAAATACTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATGAGGTTGTTGGTACAAAAGGAGTTGTCAAGAAAGTTGAATTTGTTCGGATTATAACTGAGGCATTAGATTCTCTTGGTTACAAAAAGACTCGGGCCTTACTAGAGGAAGAGTCAGGGATACCCTTGCACACTTCCGTCGTAAATTTGTTTATGCAGCAAATTCTTGATGGTAAATGGGATGAAAGTTTAAACACATTGCGAGAGATTGGTCTGGTGGATGAAAAAATTGTAAAGTTGGCATCTTTTGTGATATTGGAGCAGAAGTTTTTTGAATTGTTGCACAAGGAAAAAGTTATGGATGCTCTGAGGACACTGAGGGGCGAGATCTCACCTCTTTGCATAAACAATGATAGAGTCCATCAGCTTTCGTTTTTCATTATATCACCTTCTCAGCAGGTTCTTACTGGGGTATCAGGTCAAGGCACAGCGAGAGTAAAGTCACGTACAGAGCTACTAGAGGAATTGCAAAGATTGCTTCCCCCAACAGTTATGGTTCCAGAAAAGAGATTGGTACATCTTGTTGAACAAGCTCTTGACTTGCAACTAGATGCTTGTAGATTTCACAACTCTGTGGTTGGTGAAATGTCACTGCTCAGTGATCATCACTGCGGAAGAGATCATATTCCATCTCTAACAATGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTACATGAACATAAAGATGAAGTCTGGTTCTTGCAGTTTTCCCATAATGGAAAGTACTTAGCCTCGTCATCTGCCGATTTTGCCGTAATTATATGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATTGGATGGCAGTGTCTGCATGAAACACAGACTTTTGGGTCACGAGACATATGTCTCGTATATATCATGGAGTCCTGATGACCATCAGCTTCTCACTTGTGGTGAAGAGGAAGCTGTCATTCGGTGGGATGTCGAGTCTGGTGTACGTATACACACTTATGAGAAAAAATTTGTTAAGTTTATCTCATGCGGCTGGGCTCCTGATGGAAAAAGGATATTCTGTGGTGTAACTGACAAAAGCATTAGCATGTGGGATTTGGAAGGGAAAGAGCTTGAGTGTTGGAAAGGCCACAGGGCTACTAGAATATCGGACTTGGGGATAACAAGTGATGGGAAGCATGTTATCTCTGTTTGTAAAGAAAATATGATAGTATTAGTTGGATGGGAATCAAAAGTAGAGAGAGTAATTCAGGAGGATCAGGCAATAACCTCATTTGTATTGTCCATGGACAGTAAGTATGTGTTGGTTAGTCTTTCCAACCAAGAAATTCATCTCTGGAATATCGAGGGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-PLxsSK/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335739" ref_strand="+" ref_description="SGN-U335739        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G08560.1 | Symbol: None | transducin family protein / WD-40 repeat family protein, contains 7 WD-40 repeats (PF00400); similar to will die slowly protein (WDS) (SP:Q9V3J8) (Drosophila melanogaster) | chr5:2770875-2774673 REVERSE | Aliases: MAH20.12, MAH20_12 (evalue: 2e-11, score=66.6) genbank/nr: gi|15242311|ref|NP_196473.1| transducin / WD-40 repeat protein family [Arabidopsis thaliana] gi|9759350|dbj|BAB10005.1| WD-repeat protein-like [Arabidopsis thaliana] gi|15450910|gb|AAK96726.1| WD-repeat protein-like [Arabidopsis thaliana] gi|17978717|gb|AAL47352.1| WD-repeat protein-like [Arabidopsis thaliana](evalue: 2e-09, score=66.6)">
      <seq>caactctttcctccatttctctattcacaagttctccattaacacaaatgctcaaatctctctacaagattcttactctcaacaatcaatcatataccttttttagctttcaatcgactgcttgtttacccacctaatctactagtcttagcttaccgacaaacgagagggaataaaagaatacaatttgggataaaaccatttgcgatttgctggtttttcaatcagtgtatgtatccattttgatctgaatcttcaaattgctttatgggtattgcagattcttttctaatcttttgttgattttctggatttaggcctactattccaacttttcagttttgtcttcctcctgctgttatatatgggctgacgcgtttgtttcatgggagctgaggacgatgatgaaccaccatcaaaacgtgtgaaggtatcctccagtcaattggtagatatttctgacaggacatttgttagagatcctgtaagttgttcattgggtgactcgatggctcgacccctgactcttcaaggggacgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-FNxaN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="41932" stop="38932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41632" g_stop="41323" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41322" i_stop="39464" i_length="1859">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39463" g_stop="39232" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="542" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-U335739" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41632" e_stop="41323"/>
          <exon e_start="39463" e_stop="39232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCTTTCCTCCCATTTCTCTATTCACAAGTTCTCCATT-ACACAAATACTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGTGTATGTATCCATTTTGATCTGAATCTTCAAATTGCTTTATGGGTATTGCAGATTCTTTTCTAATCTTTTGTTGATTTTCTGGTAATCTTTCTTTTCTTTGCTTGTCTCTTACGGAAATGTTTTCTGGGTTTGGTTTGATTCTTGTTCTTGATTTTGTTTGTTGGATTTGTTGAATGGTGTTAATGGATTATCTAAAGTTTGATTTTTTTCTAGTTGGGTTTTGAGTGGTTATTGTAGTATATGCTTGTTTTACAAAAGAGAATGGTTTGCAGAAGTTAAGTTTAGCCTATTTACAACTTAAGTACTAATTAGACGGCAAATGCATTTTGAGTTGAATTACCTTTTGCAGAAGTTTACTTAACAGCAGATACATTTACTAACTTAGTTTGTTATTGGATGCTTTTAGTACCGATTGGATCTTTTCATCAAGATCCCTAGTTTGTGCTGTTGGTGAGAGGTATGGTTTAGATTTGCTGTAAATGTGATTGCATTGGAGTGAAATTATCCTTAATTAGTTCATCTTTGATCATAACAAGTTTAAGAGGCTTAAGACTCATCACTATCTTGTGCTATATGTGTATCTTACTATCATACTTGATCATAATAGGTTTGAGGGGGTTCAGTGGGTGCGTGCTACATCATATTTTGCTAGGGGAGGATTGACTTTGTTTCCAGGGTCGTGATATGATCGATCCATGATCCTGTAGAGAAATAGGGTAAACCTTGTTTGTTATTTGGAAAGTGTGATTAACTTGTGTAGTCAGCTCTTGCAAATGTTTGCAACTAACGAGTGAAATTCTGTTGATTGCTTCAGCTTTATTGTGGCCCAATTTATGGCCTTCAGTCATATTCACATATTAGTAAGAAGATTAGATTCTTCTCATTAGTGGCCAGGCTATTTTGGATGAACTATTATGTCGATAGTGGTAACATTGATGTGTTTTCTTTTCTATTGAATTTCGAATATCAAAGATCAGACATATCTTAGAGTTGAATTTATGGATTCATTTACAGTAATTACGTAGCTTGAGTGTTGATTAATGTTGAACTTGCGTGTTACCGTGCACACTGGTAAAACATTTGCATTTTGTGTGATCTCCTTCTGGCAGGAATTGAAACTTCTCTGTCTGCATCAGTTCTCTTATTTGGGAGGATTATTATTAGCGGGTAATGCTGTTTGATCAGGAGGCTGGTATTGAGAAGACCGAATAGGTTATTCAAAGAAAATGGTAGCTAATGCTCCTTCGATGTTAATGTGGACTTAGCGAGAGCAATGTACTAGGCAGGCTGTTCAATGGTTCGATAACTAGTAGTATTAATTTGTGATGTCTATTTAGGTCGTATGTTCATTAAGCTTTTTAAATTCAGGCTGACACCGTCCTACCCTTCCTACCTCTCCTTTCTTGAATAATTGTTAAAAAGGAAGTTTTGGTGGAGCCCTTTATGTATAGAGTTTCAACTTAAGCAAGCAAAACCGATTTGTAGCATAAGAAATTATTGGTGTCTGGCATCAGGTCCAAAATTACTGGTTGCACTTCGTGATGGTATTTTATCTGGTAATTCTGAATAATCTGTCTGAGGTGTTGCTGTATTTGTTGCGAATCTGTCCAAGCAATTTTACTTTCATATATATTATTGGGTACTTCAGCATGTGATATTAGTATCAGGCGATGCTCTTGCTAAATGCTGGACAATTTTCATCAATAAAATGATTACGTATAAAAGAAGATTAGCCTATACTTTTGTTATTTGCAGTTTTTTTCCTTAAACTCTCTGTTTTGCTCATTGTCTCATTACTATCGTTCTCACTTTCTAATCGTAGATCATTGAAAGTGGATCCTGCAGATTACCTTCTTTCTCTTTTTTCTGTTTCTATTTTTATTAGTTTTATGTTATTTCCTTTTCTGCTGTTACTTAGAGTCTCCATTTATTAATTGCAGGATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATG</genome_strand>
        <mrna_strand>CAACTCTTTCCT-CCATTTCTCTATTCACAAGTTCTCCATTAACACAAATGCTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGTGTATGTATCCATTTTGATCTGAATCTTCAAATTGCTTTATGGGTATTGCAGATTCTTTTCTAATCTTTTGTTGATTTTCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="12192" PGL_stop="6689"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12192" e_stop="12011"/>
            <exon e_start="11910" e_stop="11783"/>
            <exon e_start="11304" e_stop="11154"/>
            <exon e_start="10981" e_stop="10778"/>
            <exon e_start="9578" e_stop="9154"/>
            <exon e_start="8849" e_stop="8657"/>
            <exon e_start="8568" e_stop="8473"/>
            <exon e_start="7969" e_stop="7814"/>
            <exon e_start="7194" e_stop="6689"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.657" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="0.995"/>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12192" e_stop="12011" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12010" i_stop="11911" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11910" e_stop="11783" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="11782" i_stop="11305" i_length="478"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11304" e_stop="11154" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11153" i_stop="10982" i_length="172"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10981" e_stop="10778" e_length="204"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="10777" i_stop="9579" i_length="1199"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="9578" e_stop="9154" e_length="425"/>
          </exon>
          <intron i_serial="5" don_prob="0.657" acc_prob="0.945">
            <gDNA_intron_boundary i_start="9153" i_stop="8850" i_length="304"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="8849" e_stop="8657" e_length="193"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="8656" i_stop="8569" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="8568" e_stop="8473" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="8472" i_stop="7970" i_length="503"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="7969" e_stop="7814" e_length="156"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7813" i_stop="7195" i_length="619"/>
          </intron>
          <exon e_serial="9" e_score="0.984">
            <gDNA_exon_boundary e_start="7194" e_stop="6689" e_length="506"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12192" stop="12011"/>
              <exon start="11910" stop="11783"/>
              <exon start="11304" stop="11154"/>
              <exon start="10981" stop="10778"/>
              <exon start="9578" stop="9154"/>
              <exon start="8849" stop="8657"/>
              <exon start="8568" stop="8473"/>
              <exon start="7969" stop="7814"/>
              <exon start="7194" stop="6689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8541" stop="8473"/>
              <exon start="7969" stop="7814"/>
              <exon start="7194" stop="6697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314764" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAG : GGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGG : TGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG : TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG : AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAG : CGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAG : GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG : ATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT : GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTATATTTCTGTATCTGTCAGAGAAATAGTATGGTCCAGTTGAAGTTGTTATTTC</gDNA_template>
            <first_frame> N  F  *  D  L  R  *  W  V  V  Q  E  M  H  G  N  *  R  T  I  L  S  F  L  R  E  R  L  L  L  L  L  F  W  M  V  G  V  R  L  N  L  M  S  I  T  L  S  L  L  L  K  L  L  L  W  T  H  S  R  R :   V  L  L  N  I  G  D  *  L  R  H  M  E  M  L  W  G  F  P  Q  R  M  I  W  V  T  V  K  L  V  T  M  L  L  G  L  E  G  S  L  L  K   : V  Q  S  L  L  T  *  P  L  P  L  G  K  S  M  M  E  K  V  S  N  T  F  K  N  V  L  R  K  E  L  C  T  L  L  V  S  *  V  M  G  V  S  T  P  G  L  T  N  C  C :   C  Y  *  K  V  L  L  S  V  V  P  K  E  F  V  S  M  P  S  P  M  D  V  M  F  W  M  V  L  V  W  A  S  W  R  P  S  R  M  I  *  Q  N  Y  V  D  K  V  L  M  P  G  L  H  L  V  E  V  A  C  M  L  P  W  I  V  M  R :   M  T  G  M  S  *  K  E  V  G  M  H  K  F  L  V  R  L  H  T  I  S  R  I  P  L  R  Q  L  R  S  *  G  R  N  P  M  P  M  I  N  T  *  P  L  L  L  L  L  M  I  M  E  S  L  L  V  L  F  W  M  V  M  L  S  *  L  S  T  S  E  Q  I  V  W  S  C  L  Q  R  P  L  N  M  R  I  S  I  N  L  I  V  Y  E  S  L  K  S  I  M  L  V  C  S  N  M  T  V  N  *  S  F  Q  A  N  T  L  F  L  L  Q  R  L  T  G  H  L  G  S  I  *  C  A  M  V  F  G  L  L  L  V   : A  R  P  L  N  L  V  M  S  P  S  F  G  M  E  T  V  L  G  I  L  T  R  N  W  K  S  M  W  K  F  Q  V  T  V  G  L  H  L  M  L  S  Q  K  *  R  H  W  R  L  L  K  G  L  G  R  P  S  L  A  T  N  L  I  R :   Y  V  *  T  Y  L  T  V  I  W  W  A  I  L  V  T  S  K  Q  Q  L  K  L  A  R  L  P  M  M  V  S  R :   *  S  L  M  L  L  S  K  W  V  E  F  S  L  L  L  L  T  M  E  M  L  K  I  W  L  R  E  T  R  R  E  S  H  Y  L  T  K  M  E  T  F  R  F  S  L  L  T  L  S  N  L :   F  L  L  Q  L  V  V  L  D  L  Y  L  V  *  D  S  A  Q  I  S  P  P  V  D  L  L  M  L  L  Q  P  L  *  I  C  T  D  T  R  R  L  A  I  T  S  Q  P  *  S  K  L  W  T  T  R  *  S  H  R  P  *  G  *  S  F  G  A  R  R  K  R  *  *  P  F  Y  T  L  F  I  *  I  R  H  F  *  A  Y  I  N  R  G  *  H  S  T  T  W  P  V  M  M  L  *  W  K  S  V  I  Y  Y  C  S  F  *  T  L  L  S  F  K  A  *  L  R  V  F  V  F  W  *  T  R  I  L  N  L  S  L  F  V  A  E  I  Y  *  L  F  D  A  L  Y  F  C  I  C  Q  R  N  S  M  V  Q  L  K  L  L  F  </first_frame>
            <second_frame>  I  F  K  I  *  D  N  G  *  F  R  R  C  M  E  I  E  G  P  S  *  A  S  *  G  K  D  C  C  C  Y  C  F  G  W  L  G  *  G  *  T  *  *  V  *  R  Y  L  C  C  *  N  S  C  Y  G  L  T  Q  E   : G  C  S  *  T  L  E  I  D  *  G  T  W  K  C  C  G  A  S  H  R  G  *  Y  G  *  Q  *  S  W  S  Q  C  S  W  G  W  K  D  L  C  S  R  :  C  K  A  C  *  P  S  P  C  L  W  E  N  L  *  W  R  R  F  Q  I  R  S  R  M  F  *  E  R  N  S  A  P  Y  W  S  R  E  *  W  G  C  P  L  Q  A  *  P  T  A   : V  A  T  E  R  C  C  *  A  W  C  Q  K  N  S  C  P  C  P  H  R  W  T  *  C  S  G  W  F  *  C  G  L  H  G  D  P  R  E  *  S  S  K  I  T  W  T  R  C  *  C  P  G  C  I  W  W  R  S  H  V  C  Y  H  G  S  L  *   : E  *  L  G  C  R  K  K  R  L  G  C  T  S  S  W  *  G  S  T  P  F  Q  G  S  R  *  G  N  *  E  V  E  A  G  T  Q  C  Q  *  S  I  L  S  P  F  C  C  C  *  *  *  W  K  A  C  W  S  Y  F  G  W  *  C  C  R  D  F  Q  L  Q  S  R  S  Y  G  H  A  C  K  G  P  *  I  *  E  F  R  *  I  *  S  C  T  S  P  *  N  P  L  C  W  Y  A  P  I  *  R  *  I  E  A  S  K  Q  I  P  C  F  S  S  R  D  *  Q  D  I  W  G  V  S  S  A  Q  W  Y  S  D  F  C  L  *  :  R  D  R  *  I  W  S  C  H  L  L  L  E  W  K  P  F  W  V  F  *  R  E  I  G  R  V  C  G  N  S  K  *  Q  W  D  Y  I  *  C  *  A  K  N  E  G  T  G  D  C  *  K  G  *  G  G  H  P  *  P  Q  I  *  S   : G  T  C  E  L  T  *  Q  *  Y  G  G  P  Y  W  *  H  Q  S  N  N  *  S  L  Q  G  C  R  *  W  C  Q   : D  D  P  *  C  Y  *  A  S  G  W  N  F  P  C  Y  C  *  P  W  K  C  *  R  Y  G  *  E  K  Q  E  G  R  A  I  T  *  Q  K  W  K  H  S  D  S  H  F  S  H  S  R  T   : C  S  Y  C  N  W  W  S  W  T  C  T  W  C  E  I  P  H  R  S  P  H  R  W  T  C  *  C  C  F  N  L  Y  E  S  A  R  I  R  G  A  *  R  L  R  A  N  L  D  R  S  C  G  Q  L  D  N  L  I  D  L  R  V  E  V  L  A  Q  E  E  S  D  N  D  H  S  T  L  C  L  F  E  *  D  I  F  E  L  I  S  T  E  V  D  I  L  P  R  G  L  *  *  C  Y  D  G  R  V  *  Y  T  T  V  H  F  K  P  C  C  L  S  R  H  N  F  E  F  L  F  F  G  E  Q  E  F  L  I  F  H  Y  L  W  Q  K  Y  I  S  C  L  M  L  Y  I  S  V  S  V  R  E  I  V  W  S  S  *  S  C  Y  F </second_frame>
            <third_frame>   F  L  R  S  E  I  M  G  S  S  G  D  A  W  K  L  K  D  H  P  K  L  P  K  G  K  T  V  A  V  I  V  L  D  G  W  G  E  A  K  P  N  E  Y  N  A  I  S  V  A  E  T  P  V  M  D  S  L  K  K  :  G  A  P  E  H  W  R  L  I  K  A  H  G  N  A  V  G  L  P  T  E  D  D  M  G  N  S  E  V  G  H  N  A  L  G  A  G  R  I  F  A  Q  G :   A  K  L  V  D  L  A  L  A  S  G  K  I  Y  D  G  E  G  F  K  Y  V  Q  E  C  F  E  K  G  T  L  H  L  I  G  L  V  S  D  G  G  V  H  S  R  L  D  Q  L  L  :  L  L  L  K  G  A  A  E  R  G  A  K  R  I  R  V  H  A  L  T  D  G  R  D  V  L  D  G  S  S  V  G  F  M  E  T  L  E  N  D  L  A  K  L  R  G  Q  G  V  D  A  R  V  A  S  G  G  G  R  M  Y  V  T  M  D  R  Y  E  :  N  D  W  D  V  V  K  R  G  W  D  A  Q  V  L  G  E  A  P  H  H  F  K  D  P  V  E  A  I  K  K  L  R  Q  E  P  N  A  N  D  Q  Y  L  A  P  F  V  V  V  D  D  N  G  K  P  V  G  P  I  L  D  G  D  A  V  V  T  F  N  F  R  A  D  R  M  V  M  L  A  K  A  L  E  Y  E  N  F  D  K  F  D  R  V  R  V  P  K  I  H  Y  A  G  M  L  Q  Y  D  G  E  L  K  L  P  S  K  Y  L  V  S  P  P  E  I  D  R  T  S  G  E  Y  L  V  R  N  G  I  R  T  F  A  C  S :   E  T  V  K  F  G  H  V  T  F  F  W  N  G  N  R  S  G  Y  F  D  E  K  L  E  E  Y  V  E  I  P  S  D  S  G  I  T  F  N  V  K  P  K  M  K  A  L  E  I  A  E  R  A  R  E  A  I  L  S  H  K  F  D  Q  :  V  R  V  N  L  P  N  S  D  M  V  G  H  T  G  D  I  K  A  T  I  E  A  C  K  A  A  D  D  G  V  K  :  M  I  L  D  A  I  E  Q  V  G  G  I  F  L  V  T  A  D  H  G  N  A  E  D  M  V  K  R  N  K  K  G  E  P  L  L  D  K  N  G  N  I  Q  I  L  T  S  H  T  L  E  P  :  V  P  I  A  I  G  G  P  G  L  V  P  G  V  R  F  R  T  D  L  P  T  G  G  L  A  N  V  A  S  T  F  M  N  L  H  G  Y  E  A  P  S  D  Y  E  P  T  L  I  E  V  V  D  N  *  I  I  S  *  T  L  G  L  K  F  W  R  K  K  K  A  I  M  T  I  L  H  F  V  Y  L  N  K  T  F  L  S  L  Y  Q  Q  R  L  T  F  Y  H  V  A  C  N  D  A  M  M  E  E  C  D  I  L  L  F  I  L  N  P  V  V  F  Q  G  I  T  S  S  F  C  F  L  V  N  K  N  S  *  S  F  T  I  C  G  R  N  I  L  V  V  *  C  S  I  F  L  Y  L  S  E  K  *  Y  G  P  V  E  V  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12190" stop="12011"/>
                    <exon start="11910" stop="11783"/>
                    <exon start="11304" stop="11154"/>
                    <exon start="10981" stop="10778"/>
                    <exon start="9578" stop="9154"/>
                    <exon start="8849" stop="8657"/>
                    <exon start="8568" stop="8473"/>
                    <exon start="7969" stop="7814"/>
                    <exon start="7194" stop="7030"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1695</number_coding_nucleotides>
                  <number_encoded_amino_acids>565</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLRSEIMGSSGDAWKLKDHPKLPKGKTVAVIVLDGWGEAKPNEYNAISVAETPVMDSLKKGAPEHWRLIKAHGNAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYDGEGFKYVQECFEKGTLHLIGLVSDGGVHSRLDQLLLLLKGAAERGAKRIRVHALTDGRDVLDGSSVGFMETLENDLAKLRGQGVDARVASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHHFKDPVEAIKKLRQEPNANDQYLAPFVVVDDNGKPVGPILDGDAVVTFNFRADRMVMLAKALEYENFDKFDRVRVPKIHYAGMLQYDGELKLPSKYLVSPPEIDRTSGEYLVRNGIRTFACSETVKFGHVTFFWNGNRSGYFDEKLEEYVEIPSDSGITFNVKPKMKALEIAERAREAILSHKFDQVRVNLPNSDMVGHTGDIKATIEACKAADDGVKMILDAIEQVGGIFLVTADHGNAEDMVKRNKKGEPLLDKNGNIQILTSHTLEPVPIAIGGPGLVPGVRFRTDLPTGGLANVASTFMNLHGYEAPSDYEPTLIEVVDN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7017" stop="6787"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLGLKFWRKKKAIMTILHFVYLNKTFLSLYQQRLTFYHVACNDAMMEECDILLFILNPVVFQGITSSFCFLVNKNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9254" e_stop="8810"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9254" e_stop="8810" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9254" stop="8810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339028" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAAT</gDNA_template>
            <first_frame> E  L  K  L  P  S  K  Y  L  V  S  P  P  E  I  D  R  T  S  G  E  Y  L  V  R  N  G  I  R  T  F  A  C  R  C  V  A  V  A  Y  L  L  V  P  L  F  S  I  F  A  E  *  I  A  N  L  L  K  M  S  D  Y  Y  R  V  F  C  Y  I  C  *  H  C  K  A  W  K  S  I  G  L  L  Y  F  K  K  *  N  K  M  V  N  *  E  V  S  W  K  *  I  C  H  S  K  *  *  N  I  L  Q  E  E  T  S  N  I  *  E  F  E  F  S  L  N  *  Y  *  Q  L  R  F  L  F  Q  Q  R  D  R  *  I  W  S  C  H  L  L  L  E  </first_frame>
            <second_frame>  N  *  S  F  Q  A  N  T  L  F  L  L  Q  R  L  T  G  H  L  G  S  I  *  C  A  M  V  F  G  L  L  L  V  G  A  L  L  W  H  I  F  W  C  L  C  L  V  F  L  P  N  K  L  L  I  C  S  K  C  L  I  I  I  E  S  S  A  I  F  V  N  I  V  K  P  G  S  Q  L  A  S  C  I  L  R  N  K  I  K  W  *  I  K  R  L  V  G  S  K  Y  A  I  L  N  D  K  I  F  C  K  K  K  H  L  I  Y  K  S  L  N  F  L  *  T  S  I  N  N  S  G  S  C  F  N  S  E  T  V  K  F  G  H  V  T  F  F  W  N </second_frame>
            <third_frame>   I  E  A  S  K  Q  I  P  C  F  S  S  R  D  *  Q  D  I  W  G  V  S  S  A  Q  W  Y  S  D  F  C  L  *  V  R  C  C  G  I  S  S  G  A  F  V  *  Y  F  C  R  I  N  C  *  F  A  Q  N  V  *  L  L  *  S  L  L  L  Y  L  L  T  L  *  S  L  E  V  N  W  P  L  V  F  *  E  I  K  *  N  G  E  L  R  G  *  L  E  V  N  M  P  F  *  M  I  K  Y  S  A  R  R  N  I  *  Y  I  R  V  *  I  F  F  E  L  V  L  T  T  P  V  L  V  S  T  A  R  P  L  N  L  V  M  S  P  S  F  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9184" stop="8981"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CAMVFGLLLVGALLWHIFWCLCLVFLPNKLLICSKCLIIIESSAIFVNIVKPGSQLASCILRNKIKW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="15856" PGL_stop="15042"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15856" e_stop="15042"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="15856" e_stop="15042" e_length="815"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15856" stop="15042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322674" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAAATGGACAATGGAAAATATGGAGAAAGGCCAATGATTTTGGCTATGAAAGGCCATCCAGGGACAGGTAAGAGCACACTTGCACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGTTGGGGTGGAGGTTCCAAGACTTGTTGTGGATACAACATGTGCTAATGGGGTTCAACAAGTGGTATCAAACGTGTTGGAGTTTGTTTCTAATGCATGTGGTGAAAAAAAGAAAAAGTTGTATGTTAATTAGGAAATTATGAGACCGTTTGATAGAGTATATATTAATAATATTGAATTTAGTTATGTTAAAATTACTTTTTTCTAATATTTAATTTGATGTATTAAAAATCGTTCTATAACTACTCATGCTTATCAATGTACATTTATAATAGCCTGTGTATTGCTAATAGTGTATAACTAATATATTTATTAATTAGATTTT</gDNA_template>
            <first_frame> I  K  W  T  M  E  N  M  E  K  G  Q  *  F  W  L  *  K  A  I  Q  G  Q  V  R  A  H  L  H  N  P  *  L  K  P  *  N  V  L  L  *  T  K  I  T  S  K  I  A  L  N  H  F  N  K  S  L  K  P  Q  N  S  S  M  T  Y  H  T  M  P  C  G  E  S  P  P  L  S  *  T  *  V  *  A  W  *  S  T  H  H  S  H  V  E  L  T  L  T  G  S  L  R  S  R  I  I  V  G  L  R  L  L  *  W  S  A  S  R  G  I  K  P  S  G  V  G  G  S  S  *  G  V  S  W  W  N  M  A  Q  A  G  I  S  H  P  R  G  K  K  W  R  S  C  W  K  G  M  K  G  V  G  I  M  M  L  G  W  R  F  Q  D  L  L  W  I  Q  H  V  L  M  G  F  N  K  W  Y  Q  T  C  W  S  L  F  L  M  H  V  V  K  K  R  K  S  C  M  L  I  R  K  L  *  D  R  L  I  E  Y  I  L  I  I  L  N  L  V  M  L  K  L  L  F  S  N  I  *  F  D  V  L  K  I  V  L  *  L  L  M  L  I  N  V  H  L  *  *  P  V  Y  C  *  *  C  I  T  N  I  F  I  N  *  I   </first_frame>
            <second_frame>  S  N  G  Q  W  K  I  W  R  K  A  N  D  F  G  Y  E  R  P  S  R  D  R  *  E  H  T  C  T  I  H  S  *  N  P  K  M  S  S  Y  R  Q  R  S  L  Q  R  L  H  *  T  T  S  T  N  H  *  S  H  K  T  H  Q  *  P  I  I  R  C  H  V  A  S  R  L  R  S  A  R  L  R  S  E  R  G  D  R  L  T  T  L  T  S  S  S  P  *  P  D  H  *  D  R  E  S  *  W  G  S  G  C  C  S  G  V  Q  A  E  G  S  S  Q  V  A  *  A  A  R  A  E  G  *  A  G  G  I  W  L  K  L  A  *  A  I  H  V  A  R  N  G  E  V  V  G  R  V  *  R  V  L  G  L  *  C  W  G  G  G  S  K  T  C  C  G  Y  N  M  C  *  W  G  S  T  S  G  I  K  R  V  G  V  C  F  *  C  M  W  *  K  K  E  K  V  V  C  *  L  G  N  Y  E  T  V  *  *  S  I  Y  *  *  Y  *  I  *  L  C  *  N  Y  F  F  L  I  F  N  L  M  Y  *  K  S  F  Y  N  Y  S  C  L  S  M  Y  I  Y  N  S  L  C  I  A  N  S  V  *  L  I  Y  L  L  I  R  F  </second_frame>
            <third_frame>   Q  M  D  N  G  K  Y  G  E  R  P  M  I  L  A  M  K  G  H  P  G  T  G  K  S  T  L  A  Q  S  I  A  K  T  L  K  C  P  L  I  D  K  D  H  F  K  D  C  T  K  P  L  Q  Q  I  T  K  A  T  K  L  I  N  D  L  S  Y  D  A  M  W  R  V  A  S  A  Q  L  D  L  G  L  S  V  V  I  D  S  P  L  S  R  R  A  H  L  D  R  I  I  E  I  A  N  H  S  G  A  Q  V  V  V  V  E  C  K  P  R  D  Q  A  K  W  R  R  R  L  E  L  R  G  E  L  V  E  Y  G  S  S  W  H  K  P  S  T  W  Q  E  M  E  K  L  L  E  G  Y  E  G  C  W  D  Y  D  V  G  V  E  V  P  R  L  V  V  D  T  T  C  A  N  G  V  Q  Q  V  V  S  N  V  L  E  F  V  S  N  A  C  G  E  K  K  K  K  L  Y  V  N  *  E  I  M  R  P  F  D  R  V  Y  I  N  N  I  E  F  S  Y  V  K  I  T  F  F  *  Y  L  I  *  C  I  K  N  R  S  I  T  T  H  A  Y  Q  C  T  F  I  I  A  C  V  L  L  I  V  Y  N  *  Y  I  Y  *  L  D  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15854" stop="15234"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMDNGKYGERPMILAMKGHPGTGKSTLAQSIAKTLKCPLIDKDHFKDCTKPLQQITKATKLINDLSYDAMWRVASAQLDLGLSVVIDSPLSRRAHLDRIIEIANHSGAQVVVVECKPRDQAKWRRRLELRGELVEYGSSWHKPSTWQEMEKLLEGYEGCWDYDVGVEVPRLVVDTTCANGVQQVVSNVLEFVSNACGEKKKKLYVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="26461" PGL_stop="25862"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26461" e_stop="26286"/>
            <exon e_start="26207" e_stop="25862"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.955"/>
          <exon-only e_score="0.899"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="26461" e_stop="26286" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26285" i_stop="26208" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="0.899">
            <gDNA_exon_boundary e_start="26207" e_stop="25862" e_length="346"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26461" stop="26286"/>
              <exon start="26207" stop="25862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCAGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAG : GATAGAATATGGATCGGGTGTCACGTTTCGACACCAGGATAGAATATGGATCAGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAAGATAATGAATCTTGAAAGATGTTAATATATTCAATCTAATGAACCGAAATCCCAAATGAGCATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  S  E  I  R  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R :   I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  R  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  K  I  M  N  L  E  R  C  *  Y  I  Q  S  N  E  P  K  S  Q  M  S  M  M  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  *  M  K  V  V  R  L  G  D  Q  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P   : G  *  N  M  D  R  V  S  R  F  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  R  *  *  I  L  K  D  V  N  I  F  N  L  M  N  R  N  P  K  *  A  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I   </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  *  K  *  *  D  *  G  I  R  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  :  D  R  I  W  I  G  C  H  V  S  T  P  G  *  N  M  D  Q  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  E  I  P  N  E  H  D  E  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0044H04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="28876" PGL_stop="28474"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28876" e_stop="28474"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="28876" e_stop="28474" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28876" stop="28474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330331" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTATATATGGCACAGAGGCTCAGGTGAACTTGTTGCGACACTGGCTGGACATTCAGGGGCGGTGAACTGTGTTAGCTGGAACCCAACAAATCCTCATATGCTGGCATCTGCGAGTGATGATGGTACAATTCGTATATGGGGCGATAATCGAGTAAACACAAAGCAACATGACACTGCTAATGGTGTGAACTACTGCAATGGGCGAAGTTGAACTCTGAGATGCAAAAGGGCAGCGTGTAACGTTACAAATATCTTTCATCGCTATCACTGGTTTCTGTGTATATTCTGTATGTTCATGTCGAATCAACATTTATGACAAACAAGAATGTGAAATTTGCATTCAGTCCATTAATAAATCGTGTACTCTTTCCTCCATATTTTAGATTTTCTTTTCCATTTAA</gDNA_template>
            <first_frame> V  Y  I  W  H  R  G  S  G  E  L  V  A  T  L  A  G  H  S  G  A  V  N  C  V  S  W  N  P  T  N  P  H  M  L  A  S  A  S  D  D  G  T  I  R  I  W  G  D  N  R  V  N  T  K  Q  H  D  T  A  N  G  V  N  Y  C  N  G  R  S  *  T  L  R  C  K  R  A  A  C  N  V  T  N  I  F  H  R  Y  H  W  F  L  C  I  F  C  M  F  M  S  N  Q  H  L  *  Q  T  R  M  *  N  L  H  S  V  H  *  *  I  V  Y  S  F  L  H  I  L  D  F  L  F  H  L  </first_frame>
            <second_frame>  F  I  Y  G  T  E  A  Q  V  N  L  L  R  H  W  L  D  I  Q  G  R  *  T  V  L  A  G  T  Q  Q  I  L  I  C  W  H  L  R  V  M  M  V  Q  F  V  Y  G  A  I  I  E  *  T  Q  S  N  M  T  L  L  M  V  *  T  T  A  M  G  E  V  E  L  *  D  A  K  G  Q  R  V  T  L  Q  I  S  F  I  A  I  T  G  F  C  V  Y  S  V  C  S  C  R  I  N  I  Y  D  K  Q  E  C  E  I  C  I  Q  S  I  N  K  S  C  T  L  S  S  I  F  *  I  F  F  S  I  * </second_frame>
            <third_frame>   L  Y  M  A  Q  R  L  R  *  T  C  C  D  T  G  W  T  F  R  G  G  E  L  C  *  L  E  P  N  K  S  S  Y  A  G  I  C  E  *  *  W  Y  N  S  Y  M  G  R  *  S  S  K  H  K  A  T  *  H  C  *  W  C  E  L  L  Q  W  A  K  L  N  S  E  M  Q  K  G  S  V  *  R  Y  K  Y  L  S  S  L  S  L  V  S  V  Y  I  L  Y  V  H  V  E  S  T  F  M  T  N  K  N  V  K  F  A  F  S  P  L  I  N  R  V  L  F  P  P  Y  F  R  F  S  F  P  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28876" stop="28664"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYIWHRGSGELVATLAGHSGAVNCVSWNPTNPHMLASASDDGTIRIWGDNRVNTKQHDTANGVNYCNGRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="41638" PGL_stop="30381"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41638" e_stop="41404"/>
            <exon e_start="39463" e_stop="38591"/>
            <exon e_start="34656" e_stop="34555"/>
            <exon e_start="30900" e_stop="30381"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.016" acc_prob="0.991" e_score="0.979"/>
          <exon-intron don_prob="0.974" acc_prob="0.713" e_score="0.998"/>
          <exon-intron don_prob="0.992" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="41638" e_stop="41404" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.016" acc_prob="0.991">
            <gDNA_intron_boundary i_start="41403" i_stop="39464" i_length="1940"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="39463" e_stop="38591" e_length="873"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.713">
            <gDNA_intron_boundary i_start="38590" i_stop="34657" i_length="3934"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34656" e_stop="34555" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.969">
            <gDNA_intron_boundary i_start="34554" i_stop="30901" i_length="3654"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="30900" e_stop="30381" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41638" stop="41404"/>
              <exon start="39463" stop="38591"/>
              <exon start="34656" stop="34555"/>
              <exon start="30900" stop="30381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316581" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCAAACAACTCTTTCCTCCCATTTCTCTATTCACAAGTTCTCCATTACACAAATACTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGT : GATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATGAGGTTGTTGGTACAAAAGGAGTTGTCAAGAAAGTTGAATTTGTTCGGATTATAACTGAGGCATTAGATTCTCTTGGTTACAAAAAGACTCGGGCCTTACTAGAGGAAGAGTCAGGGATACCCTTGCACACTTCCGTCGTAAATTTGTTTATGCAGCAAATTCTTGATGGTAAATGGGATGAAAGTTTAAACACATTGCGAAATATTGGTCTGGTGGATGAAAAAATTGTAAAGTTGGCATCTTTTGTGATATTGGAGCAGAAGTTTTTTGAATTGTTGCACAAGGAAAAAGTTATGGATGCTCTGAGGACACTGAGGGGCGAGATCTCACCTCTTTGCATAAACAATGATAGAGTCCATCAGCTTTCGTTTTTCATTATATCACCTTCTCAGCAGGTTCTTACTGGGGTATCAGGTCAAGGCACAGCGAGAGTAAAGTCACGTACAGAGCTACTAGAGGAATTGCAAAGATTGCTTCCCCCAACAGTTATGGTTCCAGAAAAGAGATTGGTACATCTTGTTGAACAAGCTCTTGACTTGCAACTAGATGCTTGTAGATTTCACAACTCTGTGGTTGGTGAAATGTCACTGCTCAGTGATCATCACTGCGGAAGAGATCATATTCCATCTCTAACAATGCAG : ATATTACATGAACATAAAGATGAAGTCTGGTTCTTGCAGTTTTCCCATAATGGAAAGTACTTAGCCTCGTCATCTGCCGATTTTGCCGTAATTATATGGGAG : GTCAAATTGGATGGCAGTGTCTGCATGAAACACAGACTTTTGGGTCACGAGACATATGTCTCGTATATATCATGGAGTCCTGATGACCATCAGCTTCTCACTTGTGGTGAAGAGGAAGCTGTCATTCGGTGGGATGTCGAGTCTGGTGTACGTATACACACTTATGAGAAAAAATTTGTTAAGTTTATCTCATGCGGCTGGGCTCCTGATGGAAAAAGGATATTCTGTGGTGTAACTGACAAAAGCATTAGCATGTGGGATTTGGAAGGGAAAGAGCTTGAGTGTTGGAAAGGCCACAGGGCTACTAGAATATCGGACTTGGGGATAACAAGTGATGGGAAGCATGTTATCTCTGTTTGTAAAGAAAATATGATAGTATTAGTTGGATGGGAATCAAAAGTAGAGAGAGTAATTCAGGAGGATCAGGCAATAACCTCATTTGTATTGTCCATGGACAGTAAGTATGTGTTGGTTAGTCTTTCAAACCAAGAAATTCATCTCTGGAATATCGAGGGAACTG</gDNA_template>
            <first_frame> C  K  Q  L  F  P  P  I  S  L  F  T  S  S  P  L  H  K  Y  S  N  L  S  T  R  F  L  L  S  T  I  N  H  I  P  F  L  A  F  N  R  L  L  V  Y  P  P  N  L  L  V  L  A  Y  R  Q  T  R  G  N  K  R  I  Q  F  G  I  K  P  F  A  I  C  W  F  F  N  Q   : *  F  R  P  T  I  P  T  F  Q  F  C  L  P  P  A  V  I  Y  G  L  T  R  L  F  H  G  S  *  G  R  *  *  T  T  I  K  T  C  E  G  I  L  Q  S  I  G  R  Y  F  *  Q  D  I  C  *  R  S  C  K  L  F  I  G  *  L  D  G  S  T  P  D  S  S  R  G  R  *  G  C  W  Y  K  R  S  C  Q  E  S  *  I  C  S  D  Y  N  *  G  I  R  F  S  W  L  Q  K  D  S  G  L  T  R  G  R  V  R  D  T  L  A  H  F  R  R  K  F  V  Y  A  A  N  S  *  W  *  M  G  *  K  F  K  H  I  A  K  Y  W  S  G  G  *  K  N  C  K  V  G  I  F  C  D  I  G  A  E  V  F  *  I  V  A  Q  G  K  S  Y  G  C  S  E  D  T  E  G  R  D  L  T  S  L  H  K  Q  *  *  S  P  S  A  F  V  F  H  Y  I  T  F  S  A  G  S  Y  W  G  I  R  S  R  H  S  E  S  K  V  T  Y  R  A  T  R  G  I  A  K  I  A  S  P  N  S  Y  G  S  R  K  E  I  G  T  S  C  *  T  S  S  *  L  A  T  R  C  L  *  I  S  Q  L  C  G  W  *  N  V  T  A  Q  *  S  S  L  R  K  R  S  Y  S  I  S  N  N  A   : D  I  T  *  T  *  R  *  S  L  V  L  A  V  F  P  *  W  K  V  L  S  L  V  I  C  R  F  C  R  N  Y  M  G   : G  Q  I  G  W  Q  C  L  H  E  T  Q  T  F  G  S  R  D  I  C  L  V  Y  I  M  E  S  *  *  P  S  A  S  H  L  W  *  R  G  S  C  H  S  V  G  C  R  V  W  C  T  Y  T  H  L  *  E  K  I  C  *  V  Y  L  M  R  L  G  S  *  W  K  K  D  I  L  W  C  N  *  Q  K  H  *  H  V  G  F  G  R  E  R  A  *  V  L  E  R  P  Q  G  Y  *  N  I  G  L  G  D  N  K  *  W  E  A  C  Y  L  C  L  *  R  K  Y  D  S  I  S  W  M  G  I  K  S  R  E  S  N  S  G  G  S  G  N  N  L  I  C  I  V  H  G  Q  *  V  C  V  G  *  S  F  K  P  R  N  S  S  L  E  Y  R  G  N   </first_frame>
            <second_frame>  A  N  N  S  F  L  P  F  L  Y  S  Q  V  L  H  Y  T  N  T  Q  I  S  L  Q  D  S  Y  S  Q  Q  S  I  I  Y  L  F  *  L  S  I  D  C  L  F  T  H  L  I  Y  *  S  *  L  T  D  K  R  E  G  I  K  E  Y  N  L  G  *  N  H  L  R  F  A  G  F  S  I  S  :  D  L  G  L  L  F  Q  L  F  S  F  V  F  L  L  L  L  Y  M  G  *  R  V  C  F  M  G  A  E  D  D  D  E  P  P  S  K  R  V  K  V  S  S  S  Q  L  V  D  I  S  D  R  T  F  V  R  D  P  V  S  C  S  L  G  D  S  M  A  R  P  L  T  L  Q  G  D  D  E  V  V  G  T  K  G  V  V  K  K  V  E  F  V  R  I  I  T  E  A  L  D  S  L  G  Y  K  K  T  R  A  L  L  E  E  E  S  G  I  P  L  H  T  S  V  V  N  L  F  M  Q  Q  I  L  D  G  K  W  D  E  S  L  N  T  L  R  N  I  G  L  V  D  E  K  I  V  K  L  A  S  F  V  I  L  E  Q  K  F  F  E  L  L  H  K  E  K  V  M  D  A  L  R  T  L  R  G  E  I  S  P  L  C  I  N  N  D  R  V  H  Q  L  S  F  F  I  I  S  P  S  Q  Q  V  L  T  G  V  S  G  Q  G  T  A  R  V  K  S  R  T  E  L  L  E  E  L  Q  R  L  L  P  P  T  V  M  V  P  E  K  R  L  V  H  L  V  E  Q  A  L  D  L  Q  L  D  A  C  R  F  H  N  S  V  V  G  E  M  S  L  L  S  D  H  H  C  G  R  D  H  I  P  S  L  T  M  Q  :  I  L  H  E  H  K  D  E  V  W  F  L  Q  F  S  H  N  G  K  Y  L  A  S  S  S  A  D  F  A  V  I  I  W  E  :  V  K  L  D  G  S  V  C  M  K  H  R  L  L  G  H  E  T  Y  V  S  Y  I  S  W  S  P  D  D  H  Q  L  L  T  C  G  E  E  E  A  V  I  R  W  D  V  E  S  G  V  R  I  H  T  Y  E  K  K  F  V  K  F  I  S  C  G  W  A  P  D  G  K  R  I  F  C  G  V  T  D  K  S  I  S  M  W  D  L  E  G  K  E  L  E  C  W  K  G  H  R  A  T  R  I  S  D  L  G  I  T  S  D  G  K  H  V  I  S  V  C  K  E  N  M  I  V  L  V  G  W  E  S  K  V  E  R  V  I  Q  E  D  Q  A  I  T  S  F  V  L  S  M  D  S  K  Y  V  L  V  S  L  S  N  Q  E  I  H  L  W  N  I  E  G  T  </second_frame>
            <third_frame>   Q  T  T  L  S  S  H  F  S  I  H  K  F  S  I  T  Q  I  L  K  S  L  Y  K  I  L  T  L  N  N  Q  S  Y  T  F  F  S  F  Q  S  T  A  C  L  P  T  *  S  T  S  L  S  L  P  T  N  E  R  E  *  K  N  T  I  W  D  K  T  I  C  D  L  L  V  F  Q  S  V :   I  *  A  Y  Y  S  N  F  S  V  L  S  S  S  C  C  Y  I  W  A  D  A  F  V  S  W  E  L  R  T  M  M  N  H  H  Q  N  V  *  R  Y  P  P  V  N  W  *  I  F  L  T  G  H  L  L  E  I  L  *  V  V  H  W  V  T  R  W  L  D  P  *  L  F  K  G  T  M  R  L  L  V  Q  K  E  L  S  R  K  L  N  L  F  G  L  *  L  R  H  *  I  L  L  V  T  K  R  L  G  P  Y  *  R  K  S  Q  G  Y  P  C  T  L  P  S  *  I  C  L  C  S  K  F  L  M  V  N  G  M  K  V  *  T  H  C  E  I  L  V  W  W  M  K  K  L  *  S  W  H  L  L  *  Y  W  S  R  S  F  L  N  C  C  T  R  K  K  L  W  M  L  *  G  H  *  G  A  R  S  H  L  F  A  *  T  M  I  E  S  I  S  F  R  F  S  L  Y  H  L  L  S  R  F  L  L  G  Y  Q  V  K  A  Q  R  E  *  S  H  V  Q  S  Y  *  R  N  C  K  D  C  F  P  Q  Q  L  W  F  Q  K  R  D  W  Y  I  L  L  N  K  L  L  T  C  N  *  M  L  V  D  F  T  T  L  W  L  V  K  C  H  C  S  V  I  I  T  A  E  E  I  I  F  H  L  *  Q  C  R :   Y  Y  M  N  I  K  M  K  S  G  S  C  S  F  P  I  M  E  S  T  *  P  R  H  L  P  I  L  P  *  L  Y  G  R :   S  N  W  M  A  V  S  A  *  N  T  D  F  W  V  T  R  H  M  S  R  I  Y  H  G  V  L  M  T  I  S  F  S  L  V  V  K  R  K  L  S  F  G  G  M  S  S  L  V  Y  V  Y  T  L  M  R  K  N  L  L  S  L  S  H  A  A  G  L  L  M  E  K  G  Y  S  V  V  *  L  T  K  A  L  A  C  G  I  W  K  G  K  S  L  S  V  G  K  A  T  G  L  L  E  Y  R  T  W  G  *  Q  V  M  G  S  M  L  S  L  F  V  K  K  I  *  *  Y  *  L  D  G  N  Q  K  *  R  E  *  F  R  R  I  R  Q  *  P  H  L  Y  C  P  W  T  V  S  M  C  W  L  V  F  Q  T  K  K  F  I  S  G  I  S  R  E  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39400" stop="38591"/>
                    <exon start="34656" stop="34555"/>
                    <exon start="30900" stop="30382"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1431</number_coding_nucleotides>
                  <number_encoded_amino_acids>477</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVCFMGAEDDDEPPSKRVKVSSSQLVDISDRTFVRDPVSCSLGDSMARPLTLQGDDEVVGTKGVVKKVEFVRIITEALDSLGYKKTRALLEEESGIPLHTSVVNLFMQQILDGKWDESLNTLRNIGLVDEKIVKLASFVILEQKFFELLHKEKVMDALRTLRGEISPLCINNDRVHQLSFFIISPSQQVLTGVSGQGTARVKSRTELLEELQRLLPPTVMVPEKRLVHLVEQALDLQLDACRFHNSVVGEMSLLSDHHCGRDHIPSLTMQILHEHKDEVWFLQFSHNGKYLASSSADFAVIIWEVKLDGSVCMKHRLLGHETYVSYISWSPDDHQLLTCGEEEAVIRWDVESGVRIHTYEKKFVKFISCGWAPDGKRIFCGVTDKSISMWDLEGKELECWKGHRATRISDLGITSDGKHVISVCKENMIVLVGWESKVERVIQEDQAITSFVLSMDSKYVLVSLSNQEIHLWNIEGT</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41638" stop="41404"/>
                    <exon start="39463" stop="39462"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CKQLFPPISLFTSSPLHKYSNLSTRFLLSTINHIPFLAFNRLLVYPPNLLVLAYRQTRGNKRIQFGIKPFAICWFFNQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41632" e_stop="41323"/>
            <exon e_start="39463" e_stop="39232"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="0.987"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="41632" e_stop="41323" e_length="310"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="41322" i_stop="39464" i_length="1859"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39463" e_stop="39232" e_length="232"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41632" stop="41323"/>
              <exon start="39463" stop="39232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335739" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACTCTTTCCTCCCATTTCTCTATTCACAAGTTCTCCATTACACAAATACTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGTGTATGTATCCATTTTGATCTGAATCTTCAAATTGCTTTATGGGTATTGCAGATTCTTTTCTAATCTTTTGTTGATTTTCTG : GATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATG</gDNA_template>
            <first_frame> Q  L  F  P  P  I  S  L  F  T  S  S  P  L  H  K  Y  S  N  L  S  T  R  F  L  L  S  T  I  N  H  I  P  F  L  A  F  N  R  L  L  V  Y  P  P  N  L  L  V  L  A  Y  R  Q  T  R  G  N  K  R  I  Q  F  G  I  K  P  F  A  I  C  W  F  F  N  Q  C  M  Y  P  F  *  S  E  S  S  N  C  F  M  G  I  A  D  S  F  L  I  F  C  *  F  S   : G  F  R  P  T  I  P  T  F  Q  F  C  L  P  P  A  V  I  Y  G  L  T  R  L  F  H  G  S  *  G  R  *  *  T  T  I  K  T  C  E  G  I  L  Q  S  I  G  R  Y  F  *  Q  D  I  C  *  R  S  C  K  L  F  I  G  *  L  D  G  S  T  P  D  S  S  R  G  R   </first_frame>
            <second_frame>  N  S  F  L  P  F  L  Y  S  Q  V  L  H  Y  T  N  T  Q  I  S  L  Q  D  S  Y  S  Q  Q  S  I  I  Y  L  F  *  L  S  I  D  C  L  F  T  H  L  I  Y  *  S  *  L  T  D  K  R  E  G  I  K  E  Y  N  L  G  *  N  H  L  R  F  A  G  F  S  I  S  V  C  I  H  F  D  L  N  L  Q  I  A  L  W  V  L  Q  I  L  F  *  S  F  V  D  F  L  :  D  L  G  L  L  F  Q  L  F  S  F  V  F  L  L  L  L  Y  M  G  *  R  V  C  F  M  G  A  E  D  D  D  E  P  P  S  K  R  V  K  V  S  S  S  Q  L  V  D  I  S  D  R  T  F  V  R  D  P  V  S  C  S  L  G  D  S  M  A  R  P  L  T  L  Q  G  D  D  </second_frame>
            <third_frame>   T  L  S  S  H  F  S  I  H  K  F  S  I  T  Q  I  L  K  S  L  Y  K  I  L  T  L  N  N  Q  S  Y  T  F  F  S  F  Q  S  T  A  C  L  P  T  *  S  T  S  L  S  L  P  T  N  E  R  E  *  K  N  T  I  W  D  K  T  I  C  D  L  L  V  F  Q  S  V  Y  V  S  I  L  I  *  I  F  K  L  L  Y  G  Y  C  R  F  F  S  N  L  L  L  I  F  W :   I  *  A  Y  Y  S  N  F  S  V  L  S  S  S  C  C  Y  I  W  A  D  A  F  V  S  W  E  L  R  T  M  M  N  H  H  Q  N  V  *  R  Y  P  P  V  N  W  *  I  F  L  T  G  H  L  L  E  I  L  *  V  V  H  W  V  T  R  W  L  D  P  *  L  F  K  G  T  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41632" stop="41387"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLFPPISLFTSSPLHKYSNLSTRFLLSTINHIPFLAFNRLLVYPPNLLVLAYRQTRGNKRIQFGIKPFAICWFFNQCMYPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 27 chains have been computed
$ 
$ memory statistics:
$ 15472 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 1934 bytes was the average size of a spliced alignment
$ 10824 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2164 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 35 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-26 22:41:22
-->
