<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-17 23:23:54"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E350034" ref_strand="+" ref_description="SGN-E350034 [cTOS-4-M10]">
      <seq>ggaaatgctgaagatatggttaagagaaacaagaagggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgctaatgttgcttcaacctttatgaatctgcacggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaagaagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcaacagaggttgacattctaccacgtggcctgtaatgatgctatgatggaagagtgtgatatactactgttcattttaaaccctgttgtctttcaaggcataacttcgagtttttgttttttggtgaacaagaattcttaatctttcactatttgtggcagaaatatattagttgtttgatgctctatatttctgtatctgtcagagaaatagtatggtccagttgaagttgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="8212" stop="6393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7912" g_stop="7814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7813" i_stop="7195" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7194" g_stop="6697" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="597" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="600" polyA_stop="613"/>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E350034" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7912" e_stop="7814"/>
          <exon e_start="7194" e_stop="6697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTATATTTCTGTATCTGTCAGAGAAATAGTATGGTCCAGTTGAAGTT</genome_strand>
        <mrna_strand>GGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTATATTTCTGTATCTGTCAGAGAAATAGTATGGTCCAGTTGAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E350065" ref_strand="+" ref_description="SGN-E350065 [cTOS-4-L11]">
      <seq>ggaaatgctgaagatatggttaagagaaacaagaagggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgctaatgttgcttcaacctttatgaatctgcacggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaagaagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcaacagaggttgacattctaccacgtggcctgtaatgatgctatgatggaagagtgtgatatactactgttcattttaaaccctgttgtctttcaaggcataacttcgagtttttgttttttggtgaacaagaattcttaatctttcactatttgtggcagaaatatattagttgtttgatgctctatatttctgtatctgtcagagaaatagtatggtccagttgaagttgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="8212" stop="6393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7912" g_stop="7814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7813" i_stop="7195" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7194" g_stop="6697" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="597" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="600" polyA_stop="612"/>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E350065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7912" e_stop="7814"/>
          <exon e_start="7194" e_stop="6697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTATATTTCTGTATCTGTCAGAGAAATAGTATGGTCCAGTTGAAGTT</genome_strand>
        <mrna_strand>GGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTATATTTCTGTATCTGTCAGAGAAATAGTATGGTCCAGTTGAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E351111" ref_strand="+" ref_description="SGN-E351111 [cTOS-6-D22]">
      <seq>cagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgctaatgttgcttcaacctttatgaatctgcacggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaagaagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcaacagaggttgacattctaccacgtggcctgtaatgatgctatgatggaagagtgtgatatactactgttcattttaaaccctgttgtctttcaaggcataacttcgagtttttgttttttggtgaacaagaattcttaatctttcactatttgtggcagaaatatattagttgtttgatgctctatatttctgtatctgtcagagaaatagtatggtccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="8143" stop="6406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7843" g_stop="7814" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7813" i_stop="7195" i_length="619">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7194" g_stop="6706" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="519" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="520" polyA_stop="529"/>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E351111" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7843" e_stop="7814"/>
          <exon e_start="7194" e_stop="6706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTATATTTCTGTATCTGTCAGAGAAATAGTATGGTCCA</genome_strand>
        <mrna_strand>CAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTATATTTCTGTATCTGTCAGAGAAATAGTATGGTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E354353" ref_strand="+" ref_description="SGN-E354353 [cTOS-17-G21]">
      <seq>tcaagatgatccttgatgctattgagcaagtgggtggaattttccttgttactgctgaccatggaaatgctgaagatatggttaagagaaacaagaagggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgctaatgttgcttcaacctttatgaatctgcacggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaagaagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcaacagaggttgacattctaccacgtggcctgtaatgatgctatgatggaagagtgtgatatactactgttcattttaaaccctgttgtctttcaaggcataacttcgagtttttgttttttggtgaacaagaattcttaatctttcactatttgtggcagaaatatattagttgtttgatgctctaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="8271" stop="6439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7974" g_stop="7814" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7813" i_stop="7195" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7194" g_stop="6734" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="622" r_length="461" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E354353" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7974" e_stop="7814"/>
          <exon e_start="7194" e_stop="6734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTATATTTCT</genome_strand>
        <mrna_strand>TCAAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E356534" ref_strand="+" ref_description="SGN-E356534 [cTOS-21-O15]">
      <seq>agaaacaagaagggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgctaatgttgcttcaacctttatgaatctgcacggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaagaagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcaacagaggttgacattctaccacgtggcctgtaatgatgctatgatggaagagtgtgatatactactgttcatttttaaccctgttgtctttcaaggcataacttcgagtttttgtttttttggtgaacnagaattcttaatctttcactatttgtggcagaaatatattagttgtttgatgctcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="8188" stop="6439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7888" g_stop="7814" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7813" i_stop="7195" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7194" g_stop="6736" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="535" r_length="460" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E356534" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7888" e_stop="7814"/>
          <exon e_start="7194" e_stop="6736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTG-TTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTATATTT</genome_strand>
        <mrna_strand>AGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTTAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTTGGTGAACNAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E701184" ref_strand="+" ref_description="SGN-E701184 [FA15BA09]">
      <seq>agagtatgtggaaattccaagtgacagtgggattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgaccaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgctattgagcaagtgggtggaattttccttgttactgctgaccatggaaatgctgaagatatggttaagagaaacaagaagggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgcaaatgttgcttcaacctttatgaatctgcatggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaagaagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcaacagaggttgacattctaccacgtggcctgtaatgatgctatgatggaagagtgtgatatactgttcattttaaaccctgttgtctttcaaggcataacttcgagtttttgttttttggtgaacaagaattcttaatctttcactatttgtggcagaaatatattagttgtttgatgctctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="9074" stop="6439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8774" g_stop="8657" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8656" i_stop="8569" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8568" g_stop="8473" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="214" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8472" i_stop="7970" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7969" g_stop="7814" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="370" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7813" i_stop="7195" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7194" g_stop="6742" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="820" r_length="450" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="821" polyA_stop="831"/>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E701184" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8774" e_stop="8657"/>
          <exon e_start="8568" e_stop="8473"/>
          <exon e_start="7969" e_stop="7814"/>
          <exon e_start="7194" e_stop="6742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCT</genome_strand>
        <mrna_strand>AGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGACCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCAAATGTTGCTTCAACCTTTATGAATCTGCATGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTG--ATA-TACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E714803" ref_strand="+" ref_description="SGN-E714803 [FB12BH09]">
      <seq>atggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgctattgagcaagtgggtggaattttccttgttactgctgaccatggaaatgctgaagatatggttaagagaaacaagaagggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgcaaatgttgcttcaacctttatgaatctgcatggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaagaagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcaacagaggttgacattctaccacgtggcctgtaatgatgctatgatggaagagtgtgatatactgttcattttaaaccctgttgtctttcaaggcataacttcgagtttttgttttttggtgaacaagaattcttaatctttcactatttgtggcagaaatatattagttgtttgatgctctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="8841" stop="6439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8541" g_stop="8473" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8472" i_stop="7970" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7969" g_stop="7814" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="225" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7813" i_stop="7195" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7194" g_stop="6742" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="675" r_length="450" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="676" polyA_stop="689"/>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E714803" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8541" e_stop="8473"/>
          <exon e_start="7969" e_stop="7814"/>
          <exon e_start="7194" e_stop="6742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCT</genome_strand>
        <mrna_strand>ATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCAAATGTTGCTTCAACCTTTATGAATCTGCATGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTG--ATA-TACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E351195" ref_strand="+" ref_description="SGN-E351195 [cTOS-6-C20]">
      <seq>ccttgttactgctgaccatggaaatgctgaagatatggttaagagaaacaagaagggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgctaatgttgcttcaacctttatgaatctgcacggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaagaagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcaacagaggttgacattctaccacgtggcctgtaatgatgctatgatggaagagtgtgatatactactgttcattttaaaccctgttgtctttcaaggcataacttcgagtttttgttttttggtgaacaagaattcttaatctttcactatttgtggcagaaatatattagttgtttgatgctctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="8231" stop="6439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7931" g_stop="7814" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7813" i_stop="7195" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7194" g_stop="6742" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="571" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="572" polyA_stop="587"/>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E351195" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7931" e_stop="7814"/>
          <exon e_start="7194" e_stop="6742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCT</genome_strand>
        <mrna_strand>CCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E299673" ref_strand="-" ref_description="SGN-E299673 [cLEW-1-M13]">
      <seq>ttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgctaatgttgcttcaacctttatgaatctgcacggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaagaagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcaacagaggttgacattctaccacgtggcctgtaatgatgctatgatggaagagtgtgatatactactgttcattttaaaccctgttgtctttcaaggcataacttcgagtttttgttttttggtgaacaagaattcttaatctttcactatttgtggcagaaataaaatagttgtttaatgctctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="8163" stop="6439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7863" g_stop="7814" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7813" i_stop="7195" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7194" g_stop="6742" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="503" r_length="453" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="505" polyA_stop="537"/>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E299673" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299673" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7863" e_stop="7814"/>
          <exon e_start="7194" e_stop="6742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCT</genome_strand>
        <mrna_strand>TTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATAAAATAGTTGTTTAATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E714366" ref_strand="+" ref_description="SGN-E714366 [FB11BA06]">
      <seq>gttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgctaatgttgcttcaacctttatgaatctgcacggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaagaagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcaacagaggttgacattctaccacgtggcctgtaatgatgctatgatggaagagtgtgatatactactgttcattttaaaccctgttgtctttcaaggcataacttcgagtttttgttttttggtgaacaagaattcttaatctttcactatttgtggcagaaatatattagttgtttgatgctctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="7494" stop="6439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7194" g_stop="6742" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="454" polyA_stop="464"/>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E714366" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7194" e_stop="6742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCT</genome_strand>
        <mrna_strand>GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E242921" ref_strand="+" ref_description="SGN-E242921 [cLED-31-O16]">
      <seq>ctaacagtgatatggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgctattgagcaagtgggtggaattttccttgttactgctgaccatggaaatgctgaagatatggttaagagaaacaagaagggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgctaatgttgcttcaacctttatgaatctgcacggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaagaagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcaacagaggttgacattctaccacgtggcctgtaatgatgctatgatggaagagtgtgatatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="8852" stop="6562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8552" g_stop="8473" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8472" i_stop="7970" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7969" g_stop="7814" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="236" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7813" i_stop="7195" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7194" g_stop="6862" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="569" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E242921" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8552" e_stop="8473"/>
          <exon e_start="7969" e_stop="7814"/>
          <exon e_start="7194" e_stop="6862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTA</genome_strand>
        <mrna_strand>CTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E337088" ref_strand="+" ref_description="SGN-E337088 [cTOE-7-G2]">
      <seq>ttagccacaaatttgatcaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgctattgagcaagtgggtggaattttccttgttactgctgaccatggaaatgctgaagatatggttaagagaaacaagaagggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgctaatgttgcttcaacctttatgaatctgcacggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="8976" stop="6699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8676" g_stop="8657" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8656" i_stop="8569" i_length="88">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8568" g_stop="8473" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="116" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8472" i_stop="7970" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7969" g_stop="7814" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="272" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7813" i_stop="7195" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7194" g_stop="6999" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="468" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E337088" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8676" e_stop="8657"/>
          <exon e_start="8568" e_stop="8473"/>
          <exon e_start="7969" e_stop="7814"/>
          <exon e_start="7194" e_stop="6999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTT</genome_strand>
        <mrna_strand>TTAGCCACAAATTTGATCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E273882" ref_strand="+" ref_description="SGN-E273882 [cLEN-7-K4]">
      <seq>tagtgcgcaatggtattcggacttttgcttgtagcgagaccgttaaatttggtcatgtcaccttcttttggaatggaaaccgttctgggtattttgacgagaaattggaagagtatgtggaaattccaagtgacagtgggattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgatcaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgctattgagcaagtgggtggaattttccttgttactgctgaccatggaaatgctgaagatatggttaagagaaacaagaagggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="9487" stop="6858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9187" g_stop="9154" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9153" i_stop="8850" i_length="304">
            <donor d_prob="0.657" d_score="0.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8849" g_stop="8657" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="227" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8656" i_stop="8569" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8568" g_stop="8473" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="323" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8472" i_stop="7970" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7969" g_stop="7814" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="479" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7813" i_stop="7195" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7194" g_stop="7158" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="516" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E273882" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9187" e_stop="9154"/>
          <exon e_start="8849" e_stop="8657"/>
          <exon e_start="8568" e_stop="8473"/>
          <exon e_start="7969" e_stop="7814"/>
          <exon e_start="7194" e_stop="7158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTG</genome_strand>
        <mrna_strand>TAGTGCGCAATGGTATTCGGACTTTTGCTTGTAG................................................................................................................................................................................................................................................................................................................CGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E706664" ref_strand="+" ref_description="SGN-E706664 [FA30CD03]">
      <seq>aaaaagaggttgggatgcacaagttcttggtgaggctccacaccatttcaaggatcccgttgaggcaattaagaagttgaggcaggaacccaatgccaatgatcaatacttagccccttttgttgttgttgatgataatggaaagcctgttggtcctattttggatggtgatgctgtcgtgactttcaacttcagagcagatcgtatggtcatgcttgcaaaggcccttgaatatgagaatttcgataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgtagcgagaccgttaaatttggtcatgtcaccttcttttggaatggaaaccgttctgggtattttgacgagaaattggaagagtatgtggaaattccaagtgacagtgggattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgatcaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgctattgagcaagtgggtggaattttccttgttactgctgaccatggaaatgctgaagatatggttaagagaaacaagaanggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="9861" stop="7512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9561" g_stop="9154" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9153" i_stop="8850" i_length="304">
            <donor d_prob="0.657" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8849" g_stop="8657" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="601" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8656" i_stop="8569" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8568" g_stop="8473" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="697" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8472" i_stop="7970" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7969" g_stop="7814" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="853" r_length="156" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E706664" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9561" e_stop="9154"/>
          <exon e_start="8849" e_stop="8657"/>
          <exon e_start="8568" e_stop="8473"/>
          <exon e_start="7969" e_stop="7814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT</genome_strand>
        <mrna_strand>AAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAG................................................................................................................................................................................................................................................................................................................CGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAANGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E343634" ref_strand="+" ref_description="SGN-E343634 [cTOF-20-P7]">
      <seq>tcgtgactttcaacttcagagcagatcgtatggtcatgcttgcaaaggcccttgaatatgagaatttcgataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatatagtgcgcaatggtattcggacttttgcttgtagcgagaccgttaaatttggtcatgtcaccttcttttggaatggaaaccgctctgggtattttgacgagaaattggaagagtatgtggaaattccaagtgacagtgggattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgatcaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgctattgagcaagtgggtggaattatccttgttactgctgaccatggaaatgctgaagatatggttaagagaaacaagaagggagagccattacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="9685" stop="7561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9385" g_stop="9154" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9153" i_stop="8850" i_length="304">
            <donor d_prob="0.657" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8849" g_stop="8657" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="425" r_length="193" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8656" i_stop="8569" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8568" g_stop="8473" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="521" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8472" i_stop="7970" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7969" g_stop="7861" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="630" r_length="109" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E343634" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9385" e_stop="9154"/>
          <exon e_start="8849" e_stop="8657"/>
          <exon e_start="8568" e_stop="8473"/>
          <exon e_start="7969" e_stop="7861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTG</genome_strand>
        <mrna_strand>TCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATATAGTGCGCAATGGTATTCGGACTTTTGCTTGTAG................................................................................................................................................................................................................................................................................................................CGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGCTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTATCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E728425" ref_strand="+" ref_description="SGN-E728425 [LA17DB03]">
      <seq>ccattttggatggtgatgctgttgtgactttcaacttcagagcagatcgtatggccatgcttgcaaaggcccttgaatatgagaatttcgataaatttgatcgtgtacgagtccctacaatccattatgctggtatgctccaatatgacggtaaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgcagcgagactgttaaatttggtcatgtcaccttctgttggaatggaaaccgttctggatattttgacgagaaattggaagagtatgtggaaattccgagtgacagtggaattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgaccaggcacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcagagcaacaattgaagcttgcaggctgccgatgatggtgtcaagatgatccttgatgctattgagcaagtgggaggaattttccttgttactgctgaccatggaaatgctgaagatatggttaagagaaacatgaggggagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="9707" stop="7570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9406" g_stop="9154" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9153" i_stop="8850" i_length="304">
            <donor d_prob="0.657" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8849" g_stop="8657" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="446" r_length="193" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8656" i_stop="8569" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8568" g_stop="8473" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="541" r_length="95" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8472" i_stop="7970" i_length="503">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7969" g_stop="7870" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="641" r_length="100" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E728425" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9406" e_stop="9154"/>
          <exon e_start="8849" e_stop="8657"/>
          <exon e_start="8568" e_stop="8473"/>
          <exon e_start="7969" e_stop="7870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGC</genome_strand>
        <mrna_strand>CCATTTTGGATGGTGATGCTGTTGTGACTTTCAACTTCAGAGCAGATCGTATGGCCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTACAATCCATTATGCTGGTATGCTCCAATATGACGGTAAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGCAG................................................................................................................................................................................................................................................................................................................CGAGACTGTTAAATTTGGTCATGTCACCTTCTGTTGGAATGGAAACCGTTCTGGATATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCGAGTGACAGTGGAATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGACCAG........................................................................................GCACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAGAGCAACAATTGAAGCTTGC-AGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAGCAAGTGGGAGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACATGAGGGGAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E335993" ref_strand="+" ref_description="SGN-E335993 [cTOE-6-L9]">
      <seq>tgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgtagcgagaccgttaaatttggtcatgtcaccttcttttggaatggaaaccgttctgggtattttgacgagaaattggaagagtatgtggaaattccaagtgacagtgggattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgatcaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgctattgagcaagtgggtggaattttcctttgtactgctgaccatggaaatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="9510" stop="7603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9210" g_stop="9154" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9153" i_stop="8850" i_length="304">
            <donor d_prob="0.657" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8849" g_stop="8657" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="250" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8656" i_stop="8569" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8568" g_stop="8473" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="346" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8472" i_stop="7970" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7969" g_stop="7903" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="413" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E335993" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9210" e_stop="9154"/>
          <exon e_start="8849" e_stop="8657"/>
          <exon e_start="8568" e_stop="8473"/>
          <exon e_start="7969" e_stop="7903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTG</genome_strand>
        <mrna_strand>TGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAG................................................................................................................................................................................................................................................................................................................CGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTTGTACTGCTGACCATGGAAATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E704809" ref_strand="+" ref_description="SGN-E704809 [FA25BC11]">
      <seq>cccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgttatgagaatgactgggatgtcgtaaaaagaggttgggatgcacaagttcttggtgaggctccacaccatttcaaggatcccgttgaggcaattaagaagttgaggcaggaacccaataccaatgatcaatacttagccccttttgttattgttgatgataatggaaagcctgttggtcctattttggatggtgatgctgttgtgactttcaacttcagagcagatcgtatggtcatgcttgcaaaggcccttgaatatgagaatttcgataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgcagcgagactgttaaatttggtcatgtcaccttcttttggaatggaaaccgttctgggtattttgacgagaaattggaagagtatgtggaaattccaagtgacagtgggattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttacccacaaatttgaccaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgctattgagcaagtgggtggaaattttccttgttactgctgaccatggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="11130" stop="7606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10830" g_stop="10778" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10777" i_stop="9579" i_length="1199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9578" g_stop="9154" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="478" r_length="425" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9153" i_stop="8850" i_length="304">
            <donor d_prob="0.657" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8849" g_stop="8657" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="671" r_length="193" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8656" i_stop="8569" i_length="88">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8568" g_stop="8473" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="767" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8472" i_stop="7970" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7969" g_stop="7906" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="832" r_length="65" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E704809" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10830" e_stop="10778"/>
          <exon e_start="9578" e_stop="9154"/>
          <exon e_start="8849" e_stop="8657"/>
          <exon e_start="8568" e_stop="8473"/>
          <exon e_start="7969" e_stop="7906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAGGTAAATTTGTGGCTTTTAGATATGCACCATGTTAGATTTTCTTTTCAATAATGTTGGCTCCTGCACCTAATACTGTCGGAAACTTCTAATGCCCCACATAAAGCATAGAGCAGCCTTCATTTCAGTAATCCATTGACTTGTTTGGTTAATATTATTTTGATTGAATTTCGTCTAGTTATATTTTCTTCGTCTTGGCTGGGTATATCTTTGATGTGGAGTAAGATTATTGGATTAGTTCTTTGATTTGATGCTGTCTGCTGCCTCTTGTCACTGTCTGCACTCTGCTGTCATAATTTGTTTGTTAAGAAGTAATTCGATTCATCACTCTCCAATCTTAGCTTTGTAGTTTGTTTTTTCTACCCCTTCCACTATTTCTGATATCAACATTTCATCTTTGTCATCAACTGTTGTCTCCCAAAGAAATTGGGGCTAACTCAATTTCGAAAGCTAGCTCATGAAGTTGATCAAAAACATAAAGTTAGCTCATGAAGTGAGGAAAAGTACGACTTAAAAGATTACAACCCATTCCCTCACCTGATGTGGGACATTCAGACACCCGGTCCGCTAGGTCTAAACAACTAGAGCTTGAATAACACATATTGGAGGCTCAACATTGAATAACCAAACAGTAGGATGGATCTTGCTTTATACTACACAATGTGATAAGAGATGAATATGGGAATTCTGAGCTTGAATATCCCTGAAGGTATCTTGGTTTAGATAGTGGTGTATACGAAGGTTGGATAGCATCAGAACAAACATCATAGGATCCTCTAATATACTAACGATCTCCCTAACTTATCTAAGTGATATATACAGTAACATCCTCAATTACAGTTTTTTACATAATAATATTCTTGAATAACACCGTAAACACATAGCTGCTTATCAAAAACGAAAAAAAGCGGAGTGATGCATATACTTTTGGGGAACCACCATACTACCTTGACATAGATGTCTTCTGTTGTTTGAGATATAATCTGATTCTTATGGAGTGTTTTCTTCGGTTGCTTCTTTTTACTTTGAGCAGATTAATATGGTCTTGTCGACCTGATGCTTCAGGTTTGTGGTATCTTCTATCCTTCCTTCACTACTGTTATTGATTAGTTGTCATACCAATTTCTTTGCTTTAAAACAAACTATATGTGATTTCAGTTTTCATGCCCTACAGTTAATTATTTGTCATTCCTTTAATGCAGAATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGG-AATTTTCCTTGTTACTGCTGACCATGGAAATG</genome_strand>
        <mrna_strand>CCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATACCAATGATCAATACTTAGCCCCTTTTGTTATTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTTGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGCAG................................................................................................................................................................................................................................................................................................................CGAGACTGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTACCCACAAATTTGACCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAGCAAGTGGGTGGAAATTTTCCTTGTTACTGCTGACCATGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E266363" ref_strand="+" ref_description="SGN-E266363 [cLEI-3-M7]">
      <seq>ttgcaaaggcccttgaatatgagaatttcgataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgtagcgagaccgttaaatttggtcatgtcaccttcttttggaatggaaaccgttctgggtattttgacgagaaattggaagagtatgtggaaattccaagtgacagtgggattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgatcaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgctattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="9646" stop="7649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9346" g_stop="9154" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9153" i_stop="8850" i_length="304">
            <donor d_prob="0.657" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8849" g_stop="8657" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="386" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8656" i_stop="8569" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8568" g_stop="8473" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="482" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8472" i_stop="7970" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7969" g_stop="7949" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="503" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E266363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9346" e_stop="9154"/>
          <exon e_start="8849" e_stop="8657"/>
          <exon e_start="8568" e_stop="8473"/>
          <exon e_start="7969" e_stop="7949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAG</genome_strand>
        <mrna_strand>TTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAG................................................................................................................................................................................................................................................................................................................CGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E266019" ref_strand="+" ref_description="SGN-E266019 [cLEI-6-J2]">
      <seq>ttgcaaaggcccttgaatatgagaatttcgatggatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgtagcgagaccgttaaatttggtcatgtcaccttcttttggaatggaaaccgttctgggtattttgacgagaaattggaagagtatgtggaaattccaagtgacagtgggattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgatcaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="9646" stop="7655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9346" g_stop="9154" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9153" i_stop="8850" i_length="304">
            <donor d_prob="0.657" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8849" g_stop="8657" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="386" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8656" i_stop="8569" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8568" g_stop="8473" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="482" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8472" i_stop="7970" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7969" g_stop="7955" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="497" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E266019" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9346" e_stop="9154"/>
          <exon e_start="8849" e_stop="8657"/>
          <exon e_start="8568" e_stop="8473"/>
          <exon e_start="7969" e_stop="7955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCT</genome_strand>
        <mrna_strand>TTGCAAAGGCCCTTGAATATGAGAATTTCGATGGATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAG................................................................................................................................................................................................................................................................................................................CGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E343734" ref_strand="+" ref_description="SGN-E343734 [cTOF-20-F20]">
      <seq>gatgtcgtaaaaagaggttgggatgcacaagttcttggtgaggctccacaccatttcaaggatcccgttgaggcaattaagaagttgaggcaggaacccaatgccaatgatcaatacttagccccttttgttgttgttgatgataatggaaagcctgttggtcctattttggatggtgatgctgtcgtgactttcaacttcagagcagatcgtatggtcatgcttgcaaaggcccttgaatatgagaatttcgataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgtagcgagaccgttaaatttggtcatgtcaccttcttttggaatggaaaccgttctgggtattttgacgagaaattggaagagtatgtggaaattccaagtgacagtgggattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgatcaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="9869" stop="8168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9569" g_stop="9154" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9153" i_stop="8850" i_length="304">
            <donor d_prob="0.657" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8849" g_stop="8657" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="609" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8656" i_stop="8569" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8568" g_stop="8473" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="705" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E343734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9569" e_stop="9154"/>
          <exon e_start="8849" e_stop="8657"/>
          <exon e_start="8568" e_stop="8473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG</genome_strand>
        <mrna_strand>GATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAG................................................................................................................................................................................................................................................................................................................CGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E731560" ref_strand="+" ref_description="SGN-E731560 [LA27CA07]">
      <seq>gagaatgatctatcaaaattacgtggacaaggtgttgatgcccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgatatgagaatgactgggatgtcgtaaaaagaggttgggatgcacaagttcttggtgaggctccacaccatttcatggatcccgttgaggcaattaaaaaattgaggcaggaacccagtgccaatgatcaatacttagccccttttgttgttgttgatgataatggaaagcctgttggtcctattttggatggtgatgctgtcgtgactttcgacttcatagcagatcgtatggtcatgcttgcaaaggcccttgaatatgagaatttccataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctaatgcgcaatggtattcggacttttgcttgtagcgagaccgttaaatttggtcatgtcaccttcttttggaatggaaaccgttctgggtattttgacgagaaattggaagagtatgtggaaattccaagtgacagtgggattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgatcaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaagcaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="11170" stop="8207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10870" g_stop="10778" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10777" i_stop="9579" i_length="1199">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9578" g_stop="9154" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="518" r_length="425" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9153" i_stop="8850" i_length="304">
            <donor d_prob="0.657" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8849" g_stop="8657" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="711" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8656" i_stop="8569" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8568" g_stop="8507" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="773" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E731560" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10870" e_stop="10778"/>
          <exon e_start="9578" e_stop="9154"/>
          <exon e_start="8849" e_stop="8657"/>
          <exon e_start="8568" e_stop="8507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAGGTAAATTTGTGGCTTTTAGATATGCACCATGTTAGATTTTCTTTTCAATAATGTTGGCTCCTGCACCTAATACTGTCGGAAACTTCTAATGCCCCACATAAAGCATAGAGCAGCCTTCATTTCAGTAATCCATTGACTTGTTTGGTTAATATTATTTTGATTGAATTTCGTCTAGTTATATTTTCTTCGTCTTGGCTGGGTATATCTTTGATGTGGAGTAAGATTATTGGATTAGTTCTTTGATTTGATGCTGTCTGCTGCCTCTTGTCACTGTCTGCACTCTGCTGTCATAATTTGTTTGTTAAGAAGTAATTCGATTCATCACTCTCCAATCTTAGCTTTGTAGTTTGTTTTTTCTACCCCTTCCACTATTTCTGATATCAACATTTCATCTTTGTCATCAACTGTTGTCTCCCAAAGAAATTGGGGCTAACTCAATTTCGAAAGCTAGCTCATGAAGTTGATCAAAAACATAAAGTTAGCTCATGAAGTGAGGAAAAGTACGACTTAAAAGATTACAACCCATTCCCTCACCTGATGTGGGACATTCAGACACCCGGTCCGCTAGGTCTAAACAACTAGAGCTTGAATAACACATATTGGAGGCTCAACATTGAATAACCAAACAGTAGGATGGATCTTGCTTTATACTACACAATGTGATAAGAGATGAATATGGGAATTCTGAGCTTGAATATCCCTGAAGGTATCTTGGTTTAGATAGTGGTGTATACGAAGGTTGGATAGCATCAGAACAAACATCATAGGATCCTCTAATATACTAACGATCTCCCTAACTTATCTAAGTGATATATACAGTAACATCCTCAATTACAGTTTTTTACATAATAATATTCTTGAATAACACCGTAAACACATAGCTGCTTATCAAAAACGAAAAAAAGCGGAGTGATGCATATACTTTTGGGGAACCACCATACTACCTTGACATAGATGTCTTCTGTTGTTTGAGATATAATCTGATTCTTATGGAGTGTTTTCTTCGGTTGCTTCTTTTTACTTTGAGCAGATTAATATGGTCTTGTCGACCTGATGCTTCAGGTTTGTGGTATCTTCTATCCTTCCTTCACTACTGTTATTGATTAGTTGTCATACCAATTTCTTTGCTTTAAAACAAACTATATGTGATTTCAGTTTTCATGCCCTACAGTTAATTATTTGTCATTCCTTTAATGCAGAATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAAT</genome_strand>
        <mrna_strand>GAGAATGATCTATCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGATATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCATGGATCCCGTTGAGGCAATTAAAAAATTGAGGCAGGAACCCAGTGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCGACTTCATAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCCATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAATGCGCAATGGTATTCGGACTTTTGCTTGTAG................................................................................................................................................................................................................................................................................................................CGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E705661" ref_strand="+" ref_description="SGN-E705661 [FA27DB06]">
      <seq>gaaaggtgctgctgagcgtggtgccaaaaaaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggattcatggagaccctcgagaatgatctagcaaaattacgtggacaaggtgttgatgcccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgttatgagaatgactgggatgtcgtaaaaagaggttgggatgcacaagttcttggtgaggctccacaccatttcaaggatcccgttgaggcaattaagaagttgaggcaggaacccaataccaatgatcaatacttagccccttttgttattgttgatgataatggaaagcctgttggtcctattttggatggtgatgctgttgtgactttcaacttcagagcagatcgtatggtcatgcttgcaaaggcccttgaatatgagaatttcgataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgcagcgagactgttaaatttggtcatgtcaccttcttttggaatggaaaccgttctgggtattttgacgagaaattggaagagtatgtggaaattccaagtgacagtgggattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgaccaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="11273" stop="8214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10973" g_stop="10778" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10777" i_stop="9579" i_length="1199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9578" g_stop="9154" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="621" r_length="425" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9153" i_stop="8850" i_length="304">
            <donor d_prob="0.657" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8849" g_stop="8657" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="814" r_length="193" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8656" i_stop="8569" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8568" g_stop="8514" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="815" r_stop="869" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E705661" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10973" e_stop="10778"/>
          <exon e_start="9578" e_stop="9154"/>
          <exon e_start="8849" e_stop="8657"/>
          <exon e_start="8568" e_stop="8514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAGGTAAATTTGTGGCTTTTAGATATGCACCATGTTAGATTTTCTTTTCAATAATGTTGGCTCCTGCACCTAATACTGTCGGAAACTTCTAATGCCCCACATAAAGCATAGAGCAGCCTTCATTTCAGTAATCCATTGACTTGTTTGGTTAATATTATTTTGATTGAATTTCGTCTAGTTATATTTTCTTCGTCTTGGCTGGGTATATCTTTGATGTGGAGTAAGATTATTGGATTAGTTCTTTGATTTGATGCTGTCTGCTGCCTCTTGTCACTGTCTGCACTCTGCTGTCATAATTTGTTTGTTAAGAAGTAATTCGATTCATCACTCTCCAATCTTAGCTTTGTAGTTTGTTTTTTCTACCCCTTCCACTATTTCTGATATCAACATTTCATCTTTGTCATCAACTGTTGTCTCCCAAAGAAATTGGGGCTAACTCAATTTCGAAAGCTAGCTCATGAAGTTGATCAAAAACATAAAGTTAGCTCATGAAGTGAGGAAAAGTACGACTTAAAAGATTACAACCCATTCCCTCACCTGATGTGGGACATTCAGACACCCGGTCCGCTAGGTCTAAACAACTAGAGCTTGAATAACACATATTGGAGGCTCAACATTGAATAACCAAACAGTAGGATGGATCTTGCTTTATACTACACAATGTGATAAGAGATGAATATGGGAATTCTGAGCTTGAATATCCCTGAAGGTATCTTGGTTTAGATAGTGGTGTATACGAAGGTTGGATAGCATCAGAACAAACATCATAGGATCCTCTAATATACTAACGATCTCCCTAACTTATCTAAGTGATATATACAGTAACATCCTCAATTACAGTTTTTTACATAATAATATTCTTGAATAACACCGTAAACACATAGCTGCTTATCAAAAACGAAAAAAAGCGGAGTGATGCATATACTTTTGGGGAACCACCATACTACCTTGACATAGATGTCTTCTGTTGTTTGAGATATAATCTGATTCTTATGGAGTGTTTTCTTCGGTTGCTTCTTTTTACTTTGAGCAGATTAATATGGTCTTGTCGACCTGATGCTTCAGGTTTGTGGTATCTTCTATCCTTCCTTCACTACTGTTATTGATTAGTTGTCATACCAATTTCTTTGCTTTAAAACAAACTATATGTGATTTCAGTTTTCATGCCCTACAGTTAATTATTTGTCATTCCTTTAATGCAGAATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAG</genome_strand>
        <mrna_strand>GAAAGGTGCTGCTGAGCGTGGTGCCAAAAAAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGATTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATACCAATGATCAATACTTAGCCCCTTTTGTTATTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTTGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGCAG................................................................................................................................................................................................................................................................................................................CGAGACTGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGACCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E731643" ref_strand="+" ref_description="SGN-E731643 [LA27DA07]">
      <seq>gataatgatctatcaaaattacgtggacaaggtgttgatgcccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgttatgataatgactgggatgtcgtaaaaagaggttgggatgcacaagttcttggtgaggctccacaccatttcatggatcccgttgaggctattacaaaattgaggcacgaacccagtgccaatgatcaatacttagccccttttgttgttgttgatgataatggaaagcctgttggtcctattttggatggtgatgctgtcgtgactttcgacttcatagcagatcgtatggtcatgcttgcaaaggcccttgaatatgataatttccataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctaatgcgcaatggtattcggacttttgcttgtacccagaccgttatatttggtcatgtcaccttcttttgaaatggaaaccgttctgggtattttgacgagaaattggaagagtatgtggaaattccacgtgacagtgggattacatttaatgttaaaccaaaaatgacggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgatcaggtacgtgtgaacttacctaacagtgatatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="11170" stop="8237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10870" g_stop="10778" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10777" i_stop="9579" i_length="1199">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9578" g_stop="9154" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="518" r_length="425" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9153" i_stop="8850" i_length="304">
            <donor d_prob="0.657" d_score="0.96"/>
            <acceptor a_prob="0.945" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8849" g_stop="8657" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="711" r_length="193" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8656" i_stop="8569" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8568" g_stop="8537" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="743" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E731643" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10870" e_stop="10778"/>
          <exon e_start="9578" e_stop="9154"/>
          <exon e_start="8849" e_stop="8657"/>
          <exon e_start="8568" e_stop="8537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAGGTAAATTTGTGGCTTTTAGATATGCACCATGTTAGATTTTCTTTTCAATAATGTTGGCTCCTGCACCTAATACTGTCGGAAACTTCTAATGCCCCACATAAAGCATAGAGCAGCCTTCATTTCAGTAATCCATTGACTTGTTTGGTTAATATTATTTTGATTGAATTTCGTCTAGTTATATTTTCTTCGTCTTGGCTGGGTATATCTTTGATGTGGAGTAAGATTATTGGATTAGTTCTTTGATTTGATGCTGTCTGCTGCCTCTTGTCACTGTCTGCACTCTGCTGTCATAATTTGTTTGTTAAGAAGTAATTCGATTCATCACTCTCCAATCTTAGCTTTGTAGTTTGTTTTTTCTACCCCTTCCACTATTTCTGATATCAACATTTCATCTTTGTCATCAACTGTTGTCTCCCAAAGAAATTGGGGCTAACTCAATTTCGAAAGCTAGCTCATGAAGTTGATCAAAAACATAAAGTTAGCTCATGAAGTGAGGAAAAGTACGACTTAAAAGATTACAACCCATTCCCTCACCTGATGTGGGACATTCAGACACCCGGTCCGCTAGGTCTAAACAACTAGAGCTTGAATAACACATATTGGAGGCTCAACATTGAATAACCAAACAGTAGGATGGATCTTGCTTTATACTACACAATGTGATAAGAGATGAATATGGGAATTCTGAGCTTGAATATCCCTGAAGGTATCTTGGTTTAGATAGTGGTGTATACGAAGGTTGGATAGCATCAGAACAAACATCATAGGATCCTCTAATATACTAACGATCTCCCTAACTTATCTAAGTGATATATACAGTAACATCCTCAATTACAGTTTTTTACATAATAATATTCTTGAATAACACCGTAAACACATAGCTGCTTATCAAAAACGAAAAAAAGCGGAGTGATGCATATACTTTTGGGGAACCACCATACTACCTTGACATAGATGTCTTCTGTTGTTTGAGATATAATCTGATTCTTATGGAGTGTTTTCTTCGGTTGCTTCTTTTTACTTTGAGCAGATTAATATGGTCTTGTCGACCTGATGCTTCAGGTTTGTGGTATCTTCTATCCTTCCTTCACTACTGTTATTGATTAGTTGTCATACCAATTTCTTTGCTTTAAAACAAACTATATGTGATTTCAGTTTTCATGCCCTACAGTTAATTATTTGTCATTCCTTTAATGCAGAATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGT</genome_strand>
        <mrna_strand>GATAATGATCTATCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCATGGATCCCGTTGAGGCTATTACAAAATTGAGGCACGAACCCAGTGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCGACTTCATAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGATAATTTCCATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAATGCGCAATGGTATTCGGACTTTTGCTTGTAC................................................................................................................................................................................................................................................................................................................CCAGACCGTTATATTTGGTCATGTCACCTTCTTTTGAAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCACGTGACAGTGGGATTACATTTAATGTTAAACCAAAAATGACGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E703059" ref_strand="+" ref_description="SGN-E703059 [FA20BG08]">
      <seq>cttgcctctgggaaaatctatgatggagaaggtttcaaatacgttcaagaatgttttgagaaaggaactctgcaccttattggtctcgtgagtgatgggggtgtccactccaggcttgaccaattgctgttgctgctgaaaggtgctgctgagcgtggtgccaaaaaaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggattcatggagaccctcgagaatgatctagcaaattacgtggacaaggtgttgatgcccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgttatgagaatgactgggatgtcgtaaaaagaggttgggatgcacaagttcttggtgaggctccacaccatttcaaggatcccgttgaggcaattaagaagttgaggcaggaacccaataccaatgatcaatacttagccccttttgttattgttgatgataatggaaagcctgttggtcctattttggatggtgatgctgttgtgactttcaacttcagagcagatcgtatggtcatgcttgcaaaggcccttgaatatgagaatttcgataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtactaggacttttgcttgcancgagactgttaaatttggtcatgtcaccttcttttggaatggaaaccgttctgggtattttgacgagaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="11582" stop="8477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11282" g_stop="11154" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11153" i_stop="10982" i_length="172">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10981" g_stop="10778" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="332" r_length="203" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10777" i_stop="9579" i_length="1199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9578" g_stop="9154" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="757" r_length="425" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9153" i_stop="8850" i_length="304">
            <donor d_prob="0.657" d_score="0.92"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8849" g_stop="8777" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="830" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E703059" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11282" e_stop="11154"/>
          <exon e_start="10981" e_stop="10778"/>
          <exon e_start="9578" e_stop="9154"/>
          <exon e_start="8849" e_stop="8777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAGGTAAATTTGTGGCTTTTAGATATGCACCATGTTAGATTTTCTTTTCAATAATGTTGGCTCCTGCACCTAATACTGTCGGAAACTTCTAATGCCCCACATAAAGCATAGAGCAGCCTTCATTTCAGTAATCCATTGACTTGTTTGGTTAATATTATTTTGATTGAATTTCGTCTAGTTATATTTTCTTCGTCTTGGCTGGGTATATCTTTGATGTGGAGTAAGATTATTGGATTAGTTCTTTGATTTGATGCTGTCTGCTGCCTCTTGTCACTGTCTGCACTCTGCTGTCATAATTTGTTTGTTAAGAAGTAATTCGATTCATCACTCTCCAATCTTAGCTTTGTAGTTTGTTTTTTCTACCCCTTCCACTATTTCTGATATCAACATTTCATCTTTGTCATCAACTGTTGTCTCCCAAAGAAATTGGGGCTAACTCAATTTCGAAAGCTAGCTCATGAAGTTGATCAAAAACATAAAGTTAGCTCATGAAGTGAGGAAAAGTACGACTTAAAAGATTACAACCCATTCCCTCACCTGATGTGGGACATTCAGACACCCGGTCCGCTAGGTCTAAACAACTAGAGCTTGAATAACACATATTGGAGGCTCAACATTGAATAACCAAACAGTAGGATGGATCTTGCTTTATACTACACAATGTGATAAGAGATGAATATGGGAATTCTGAGCTTGAATATCCCTGAAGGTATCTTGGTTTAGATAGTGGTGTATACGAAGGTTGGATAGCATCAGAACAAACATCATAGGATCCTCTAATATACTAACGATCTCCCTAACTTATCTAAGTGATATATACAGTAACATCCTCAATTACAGTTTTTTACATAATAATATTCTTGAATAACACCGTAAACACATAGCTGCTTATCAAAAACGAAAAAAAGCGGAGTGATGCATATACTTTTGGGGAACCACCATACTACCTTGACATAGATGTCTTCTGTTGTTTGAGATATAATCTGATTCTTATGGAGTGTTTTCTTCGGTTGCTTCTTTTTACTTTGAGCAGATTAATATGGTCTTGTCGACCTGATGCTTCAGGTTTGTGGTATCTTCTATCCTTCCTTCACTACTGTTATTGATTAGTTGTCATACCAATTTCTTTGCTTTAAAACAAACTATATGTGATTTCAGTTTTCATGCCCTACAGTTAATTATTTGTCATTCCTTTAATGCAGAATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTG</genome_strand>
        <mrna_strand>CTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAATTGCTG............................................................................................................................................................................TTGCTGCTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAAAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGATTCATGGAGACCCTCGAGAATGATCTAGC-AAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATACCAATGATCAATACTTAGCCCCTTTTGTTATTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTTGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTACTAGGACTTTTGCTTGCAN................................................................................................................................................................................................................................................................................................................CGAGACTGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E707905" ref_strand="+" ref_description="SGN-E707905 [FA34BB11]">
      <seq>ccttttaagaaaggaactctgcaccttattggtctcgtgagtgatgggggtgtccactccaggcttgaccaactgctgttgctactgaaaggtgctgctgagcgtggtgccaaaagaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggcttcatggagaccctcgagaatgatctagcaaaattacgtggacaaggtgttgatgcccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgttatgagaatgactgggatgtcgtaaaaagaggttgggatgcacaagttcttggtgaggctccacaccatttcaaggatcccgttgaggcaattaagaagttgaggcaggaacccaatgccaatgatcaatacttagccccttttgttgttgttgatgataatggaaagcctgttggtcctattttggatggtgatgctgtcgtgactttcaacttcagagcagatcgtatggtcatgcttgcaaaggcccttgaatatgagaatttcgataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgtagcgagaccgttaaatttggtcatgtcaccttcttttggaatggaaaccgttctgggtatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="11529" stop="8489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11231" g_stop="11154" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11153" i_stop="10982" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10981" g_stop="10778" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="282" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10777" i_stop="9579" i_length="1199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9578" g_stop="9154" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="706" r_length="424" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9153" i_stop="8850" i_length="304">
            <donor d_prob="0.657" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8849" g_stop="8789" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="767" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E707905" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11231" e_stop="11154"/>
          <exon e_start="10981" e_stop="10778"/>
          <exon e_start="9578" e_stop="9154"/>
          <exon e_start="8849" e_stop="8789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAGGTAAATTTGTGGCTTTTAGATATGCACCATGTTAGATTTTCTTTTCAATAATGTTGGCTCCTGCACCTAATACTGTCGGAAACTTCTAATGCCCCACATAAAGCATAGAGCAGCCTTCATTTCAGTAATCCATTGACTTGTTTGGTTAATATTATTTTGATTGAATTTCGTCTAGTTATATTTTCTTCGTCTTGGCTGGGTATATCTTTGATGTGGAGTAAGATTATTGGATTAGTTCTTTGATTTGATGCTGTCTGCTGCCTCTTGTCACTGTCTGCACTCTGCTGTCATAATTTGTTTGTTAAGAAGTAATTCGATTCATCACTCTCCAATCTTAGCTTTGTAGTTTGTTTTTTCTACCCCTTCCACTATTTCTGATATCAACATTTCATCTTTGTCATCAACTGTTGTCTCCCAAAGAAATTGGGGCTAACTCAATTTCGAAAGCTAGCTCATGAAGTTGATCAAAAACATAAAGTTAGCTCATGAAGTGAGGAAAAGTACGACTTAAAAGATTACAACCCATTCCCTCACCTGATGTGGGACATTCAGACACCCGGTCCGCTAGGTCTAAACAACTAGAGCTTGAATAACACATATTGGAGGCTCAACATTGAATAACCAAACAGTAGGATGGATCTTGCTTTATACTACACAATGTGATAAGAGATGAATATGGGAATTCTGAGCTTGAATATCCCTGAAGGTATCTTGGTTTAGATAGTGGTGTATACGAAGGTTGGATAGCATCAGAACAAACATCATAGGATCCTCTAATATACTAACGATCTCCCTAACTTATCTAAGTGATATATACAGTAACATCCTCAATTACAGTTTTTTACATAATAATATTCTTGAATAACACCGTAAACACATAGCTGCTTATCAAAAACGAAAAAAAGCGGAGTGATGCATATACTTTTGGGGAACCACCATACTACCTTGACATAGATGTCTTCTGTTGTTTGAGATATAATCTGATTCTTATGGAGTGTTTTCTTCGGTTGCTTCTTTTTACTTTGAGCAGATTAATATGGTCTTGTCGACCTGATGCTTCAGGTTTGTGGTATCTTCTATCCTTCCTTCACTACTGTTATTGATTAGTTGTCATACCAATTTCTTTGCTTTAAAACAAACTATATGTGATTTCAGTTTTCATGCCCTACAGTTAATTATTTGTCATTCCTTTAATGCAGAATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTT</genome_strand>
        <mrna_strand>CCTTTTAAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG............................................................................................................................................................................TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGT-AATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAG................................................................................................................................................................................................................................................................................................................CGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E245140" ref_strand="+" ref_description="SGN-E245140 [cLEF-13-N10]">
      <seq>gaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgtaggtgcgttgctgtggcatatcttctggtgcctttgtttagtatttttgccgaataaattgctaatttgctcaaaatgtctgattattatagagtcttctgctatatttgttaacattgtaaagcctggaagtcaattggcctcttgtattttaagaaataaaataaaatggtgaattaagaggttagttggaagtaaatatgccattctaaatgataaaatattctgcaagaagaaacatctaatatataagagtttgaattttctttgaactagtattaacaactccggttcttgtttcaacagcgagaccgttaaatttggtcatgtcaccttcttttggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="9554" stop="8510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9254" g_stop="8810" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E245140" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9254" e_stop="8810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAAT</genome_strand>
        <mrna_strand>GAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E710379" ref_strand="+" ref_description="SGN-E710379 [FA55BA05]">
      <seq>ccgcttatgggaaaatctatgatggagaaagtttcaaataccttcatgaatgttttgagaaaggaactctgcaccttattggtctcgtgagtgatgggggtgtccactccaggcttgaccaactgctgttgctactgaaaggtgctgctgagcgtggtgccaaaagaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggcttcatggagaccctcgagaatgatctagcaaaattacgtggacaaggtgttgatgcccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgttatgagaatgactgggatgtcgtaaaaagaggttgggatgcacaagttcttggtgaggctccacaccatttcaaggatcccgttgaggcaattaagaagttgaggcaggaacccaatgccaatgatcaatacttagccccttttgttgttgttgatgataatggaaagcctgttggtcctattttggatggtgatgctgtcgtgactttcaacttcagagcagatcgtatggtcatgcttgcaaaggcccttgaatatgagaatttcgataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgtaccgagaccgttaaatttggtcatgtcacccttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="11579" stop="8517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11281" g_stop="11154" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11153" i_stop="10982" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10981" g_stop="10778" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="332" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10777" i_stop="9579" i_length="1199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9578" g_stop="9154" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="757" r_length="425" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9153" i_stop="8850" i_length="304">
            <donor d_prob="0.657" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8849" g_stop="8817" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="791" r_length="34" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E710379" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11281" e_stop="11154"/>
          <exon e_start="10981" e_stop="10778"/>
          <exon e_start="9578" e_stop="9154"/>
          <exon e_start="8849" e_stop="8817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAGGTAAATTTGTGGCTTTTAGATATGCACCATGTTAGATTTTCTTTTCAATAATGTTGGCTCCTGCACCTAATACTGTCGGAAACTTCTAATGCCCCACATAAAGCATAGAGCAGCCTTCATTTCAGTAATCCATTGACTTGTTTGGTTAATATTATTTTGATTGAATTTCGTCTAGTTATATTTTCTTCGTCTTGGCTGGGTATATCTTTGATGTGGAGTAAGATTATTGGATTAGTTCTTTGATTTGATGCTGTCTGCTGCCTCTTGTCACTGTCTGCACTCTGCTGTCATAATTTGTTTGTTAAGAAGTAATTCGATTCATCACTCTCCAATCTTAGCTTTGTAGTTTGTTTTTTCTACCCCTTCCACTATTTCTGATATCAACATTTCATCTTTGTCATCAACTGTTGTCTCCCAAAGAAATTGGGGCTAACTCAATTTCGAAAGCTAGCTCATGAAGTTGATCAAAAACATAAAGTTAGCTCATGAAGTGAGGAAAAGTACGACTTAAAAGATTACAACCCATTCCCTCACCTGATGTGGGACATTCAGACACCCGGTCCGCTAGGTCTAAACAACTAGAGCTTGAATAACACATATTGGAGGCTCAACATTGAATAACCAAACAGTAGGATGGATCTTGCTTTATACTACACAATGTGATAAGAGATGAATATGGGAATTCTGAGCTTGAATATCCCTGAAGGTATCTTGGTTTAGATAGTGGTGTATACGAAGGTTGGATAGCATCAGAACAAACATCATAGGATCCTCTAATATACTAACGATCTCCCTAACTTATCTAAGTGATATATACAGTAACATCCTCAATTACAGTTTTTTACATAATAATATTCTTGAATAACACCGTAAACACATAGCTGCTTATCAAAAACGAAAAAAAGCGGAGTGATGCATATACTTTTGGGGAACCACCATACTACCTTGACATAGATGTCTTCTGTTGTTTGAGATATAATCTGATTCTTATGGAGTGTTTTCTTCGGTTGCTTCTTTTTACTTTGAGCAGATTAATATGGTCTTGTCGACCTGATGCTTCAGGTTTGTGGTATCTTCTATCCTTCCTTCACTACTGTTATTGATTAGTTGTCATACCAATTTCTTTGCTTTAAAACAAACTATATGTGATTTCAGTTTTCATGCCCTACAGTTAATTATTTGTCATTCCTTTAATGCAGAATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCA-CCTTCTT</genome_strand>
        <mrna_strand>CCGCTTATGGGAAAATCTATGATGGAGAAAGTTTCAAATACCTTCATGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG............................................................................................................................................................................TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAC................................................................................................................................................................................................................................................................................................................CGAGACCGTTAAATTTGGTCATGTCACCCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E702985" ref_strand="+" ref_description="SGN-E702985 [FA20BA01]">
      <seq>gcctctgggaaaatctatgatggagaaggtttcaaatacgttcaagaatgttttgagaaaggaactctgcaccttattggtctcgtgagtgatgggggtgtccactccaggcttgaccaattgctgttgctgctgaaaggtgctgctgagcgtggtgccaaaaaaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggattcatggagaccctcgagaatgatctagcaaaattacgtggacaaggtgttgatgcccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgttatgagaatgactgggatgtcgtaaaaagaggttgggatgcacaagttcttggtgaggctccacaccatttcaaggatcccgttgaggcaattaagaagttgaggcaggaacccaataccaatgatcaatacttagccccttttgttattgttgatgataatggaaagcctgttggtcctattttggatggtgatgctgttgtgactttcaacttcagagcagatcgtatggtcatgcttgcaaaggcccttgaatatgagaatttcgataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctgtggagtatctagtgcgcaatggtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="11579" stop="8871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11279" g_stop="11154" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11153" i_stop="10982" i_length="172">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10981" g_stop="10778" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="330" r_length="204" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10777" i_stop="9579" i_length="1199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9578" g_stop="9171" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="738" r_length="408" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E702985" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11279" e_stop="11154"/>
          <exon e_start="10981" e_stop="10778"/>
          <exon e_start="9578" e_stop="9171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAGGTAAATTTGTGGCTTTTAGATATGCACCATGTTAGATTTTCTTTTCAATAATGTTGGCTCCTGCACCTAATACTGTCGGAAACTTCTAATGCCCCACATAAAGCATAGAGCAGCCTTCATTTCAGTAATCCATTGACTTGTTTGGTTAATATTATTTTGATTGAATTTCGTCTAGTTATATTTTCTTCGTCTTGGCTGGGTATATCTTTGATGTGGAGTAAGATTATTGGATTAGTTCTTTGATTTGATGCTGTCTGCTGCCTCTTGTCACTGTCTGCACTCTGCTGTCATAATTTGTTTGTTAAGAAGTAATTCGATTCATCACTCTCCAATCTTAGCTTTGTAGTTTGTTTTTTCTACCCCTTCCACTATTTCTGATATCAACATTTCATCTTTGTCATCAACTGTTGTCTCCCAAAGAAATTGGGGCTAACTCAATTTCGAAAGCTAGCTCATGAAGTTGATCAAAAACATAAAGTTAGCTCATGAAGTGAGGAAAAGTACGACTTAAAAGATTACAACCCATTCCCTCACCTGATGTGGGACATTCAGACACCCGGTCCGCTAGGTCTAAACAACTAGAGCTTGAATAACACATATTGGAGGCTCAACATTGAATAACCAAACAGTAGGATGGATCTTGCTTTATACTACACAATGTGATAAGAGATGAATATGGGAATTCTGAGCTTGAATATCCCTGAAGGTATCTTGGTTTAGATAGTGGTGTATACGAAGGTTGGATAGCATCAGAACAAACATCATAGGATCCTCTAATATACTAACGATCTCCCTAACTTATCTAAGTGATATATACAGTAACATCCTCAATTACAGTTTTTTACATAATAATATTCTTGAATAACACCGTAAACACATAGCTGCTTATCAAAAACGAAAAAAAGCGGAGTGATGCATATACTTTTGGGGAACCACCATACTACCTTGACATAGATGTCTTCTGTTGTTTGAGATATAATCTGATTCTTATGGAGTGTTTTCTTCGGTTGCTTCTTTTTACTTTGAGCAGATTAATATGGTCTTGTCGACCTGATGCTTCAGGTTTGTGGTATCTTCTATCCTTCCTTCACTACTGTTATTGATTAGTTGTCATACCAATTTCTTTGCTTTAAAACAAACTATATGTGATTTCAGTTTTCATGCCCTACAGTTAATTATTTGTCATTCCTTTAATGCAGAATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATT</genome_strand>
        <mrna_strand>GCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAATTGCTG............................................................................................................................................................................TTGCTGCTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAAAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGATTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATACCAATGATCAATACTTAGCCCCTTTTGTTATTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTTGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGTGGAGTATCTAGTGCGCAATGGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E316334" ref_strand="+" ref_description="SGN-E316334 [cTOA-25-K19]">
      <seq>tcactcaagaagggtgctcctgaacattggagattgattaaggcacatggaaatgctgtggggcttcccacagaggatgatatgggtaacagtgaagttggtcacaatgctcttggggctggaaggatctttgctcaaggtgcaaagcttgttgacctagcccttgcctctgggaaaatctatgatggagaaggtttcaaatacgttcaagaatgttttgagaaaggaactctgcaccttattggtctcgtgagtgatgggggtgtccactccaggcttgaccaactgctgttgctactgaaaggtgctgctgagcgtggtgccaaaagaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggcttcatggagaccctcgagaatgatctagcaaaattacgtggacaaggtgttgatgcccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgttatgagaatgactgggatgtcgtaaaaagaggttgggatgcacaagttcttggtgaggctccacaccatttcaaggatcccgttgaggcaattaagaagttgaggcaggaacccaatgccaatgatcaatacttagccccttttgttgttgttgatgataatggaaagcctgttggtcctattttggatggtgatgctgtcgtgactttcaacttcagagcagatcgtatggtcatgcttgcaaaggccctttgatatgagaatttcgataaatttgatcgtgtacgagtccctaaatccattatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="12221" stop="8975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12022" g_stop="12011" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12010" i_stop="11911" i_length="100">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11910" g_stop="11783" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="140" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11782" i_stop="11305" i_length="478">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11304" g_stop="11154" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="291" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11153" i_stop="10982" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10981" g_stop="10778" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="495" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10777" i_stop="9579" i_length="1199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9578" g_stop="9275" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="798" r_length="303" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E316334" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12022" e_stop="12011"/>
          <exon e_start="11910" e_stop="11783"/>
          <exon e_start="11304" e_stop="11154"/>
          <exon e_start="10981" e_stop="10778"/>
          <exon e_start="9578" e_stop="9275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCAAGAAGGTCTATTGGATTGGATTTCCTTCTTTTTGTGTTAAAGATTCTTGCTTTATGGATTTACGACTTGTTTATTTATCTGGGTTTTTGTTAAAATTAATTATAGGGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGGGTATGCGCTCTTTTCTTATAATCTTTTGTTTGCCTTTTGAAAAAAAAAATATGTTTTTACTTTAGAGATCTTGTAGGTTGTTGAATTTGAAATGTTGTTTTTGGATTATTATCTGTTAAGTTTGTTAGAAATTGGGCTGCTTAATGTTTTAGTGTAGTATAATAAATGCAACCAAGTTACTATGTCAATGCTTCCAATCAATATATTAGGAACAAATAGATCCTTCACATTTTCACTCCTTTATTGGCTTCACAATTGCTGTACCTCTGTACTACTCCCGCATCAGAGTGCAAATAGAATATTTTTTTAATACTTCCTAGTTCTAGCAACAATCGTGCTCAAGGACTTCTTTTTTTATTTGCCTGATTGATTTTATGCAATATCTGGGTTAGGGAAGCTATTTTAACGCGGGTTTGTATTTTTTTGTCCAAAAGTGTAGATTGTTGCTTGTTATCGTCTCTAATGTGTTTCCTTGCAGTGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAGGTAAATTTGTGGCTTTTAGATATGCACCATGTTAGATTTTCTTTTCAATAATGTTGGCTCCTGCACCTAATACTGTCGGAAACTTCTAATGCCCCACATAAAGCATAGAGCAGCCTTCATTTCAGTAATCCATTGACTTGTTTGGTTAATATTATTTTGATTGAATTTCGTCTAGTTATATTTTCTTCGTCTTGGCTGGGTATATCTTTGATGTGGAGTAAGATTATTGGATTAGTTCTTTGATTTGATGCTGTCTGCTGCCTCTTGTCACTGTCTGCACTCTGCTGTCATAATTTGTTTGTTAAGAAGTAATTCGATTCATCACTCTCCAATCTTAGCTTTGTAGTTTGTTTTTTCTACCCCTTCCACTATTTCTGATATCAACATTTCATCTTTGTCATCAACTGTTGTCTCCCAAAGAAATTGGGGCTAACTCAATTTCGAAAGCTAGCTCATGAAGTTGATCAAAAACATAAAGTTAGCTCATGAAGTGAGGAAAAGTACGACTTAAAAGATTACAACCCATTCCCTCACCTGATGTGGGACATTCAGACACCCGGTCCGCTAGGTCTAAACAACTAGAGCTTGAATAACACATATTGGAGGCTCAACATTGAATAACCAAACAGTAGGATGGATCTTGCTTTATACTACACAATGTGATAAGAGATGAATATGGGAATTCTGAGCTTGAATATCCCTGAAGGTATCTTGGTTTAGATAGTGGTGTATACGAAGGTTGGATAGCATCAGAACAAACATCATAGGATCCTCTAATATACTAACGATCTCCCTAACTTATCTAAGTGATATATACAGTAACATCCTCAATTACAGTTTTTTACATAATAATATTCTTGAATAACACCGTAAACACATAGCTGCTTATCAAAAACGAAAAAAAGCGGAGTGATGCATATACTTTTGGGGAACCACCATACTACCTTGACATAGATGTCTTCTGTTGTTTGAGATATAATCTGATTCTTATGGAGTGTTTTCTTCGGTTGCTTCTTTTTACTTTGAGCAGATTAATATGGTCTTGTCGACCTGATGCTTCAGGTTTGTGGTATCTTCTATCCTTCCTTCACTACTGTTATTGATTAGTTGTCATACCAATTTCTTTGCTTTAAAACAAACTATATGTGATTTCAGTTTTCATGCCCTACAGTTAATTATTTGTCATTCCTTTAATGCAGAATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTG</genome_strand>
        <mrna_strand>TCACTCAAGAAG....................................................................................................GGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG............................................................................................................................................................................TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTTGATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCT-AAATCCATTATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E706674" ref_strand="+" ref_description="SGN-E706674 [FA30CE02]">
      <seq>cgctcttctataccgcttaagatctgagataatgggtagttcaggagatgcatggaaattgaaggaccatcctaagcttcctaagggaaagactgttgctgttattgttttggatggttggggtgaggctaaacctaatgagtataacgctatctctgttgctgaaactcctgttatggactcactcaagaagggtgctcctgaacattggagattgattaaggcacatggaaatgctgtggggcttcccacagaggatgatatgggtaacagtgaagttggtcacaatgctcttggggctggaaggatctttgctcaaggtgcaaagcttgttgacctagcccttgcctctgggaaaatctatgatggagaaggtttcaaatacgttcaagaatgttttgagaaaggaactctgcaccttattggtctcgtgagtgatgggggtgtccactccaggcttgaccaattgctgttgctgctgaaaggtgctgctgagcgtggtgccaaaaaaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggattcatggagaccctcgagaatgatctagcaaaattacgtggacaaggtgttgatgcccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgttatgagaatgactgggatgtcgtaaaaagaggttgggatgccacagttcttggtgaggctccacaccatttcaaggatcccgttgaggcaattaagaagttgaggcaggaacccaataccaatgatcaatacttagccccttttgttattgttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="12487" stop="9128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12192" g_stop="12011" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="193" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12010" i_stop="11911" i_length="100">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11910" g_stop="11783" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="321" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11782" i_stop="11305" i_length="478">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11304" g_stop="11154" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="472" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11153" i_stop="10982" i_length="172">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10981" g_stop="10778" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="676" r_length="204" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10777" i_stop="9579" i_length="1199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9578" g_stop="9428" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="827" r_length="151" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E706674" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12192" e_stop="12011"/>
          <exon e_start="11910" e_stop="11783"/>
          <exon e_start="11304" e_stop="11154"/>
          <exon e_start="10981" e_stop="10778"/>
          <exon e_start="9578" e_stop="9428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAGGTCTATTGGATTGGATTTCCTTCTTTTTGTGTTAAAGATTCTTGCTTTATGGATTTACGACTTGTTTATTTATCTGGGTTTTTGTTAAAATTAATTATAGGGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGGGTATGCGCTCTTTTCTTATAATCTTTTGTTTGCCTTTTGAAAAAAAAAATATGTTTTTACTTTAGAGATCTTGTAGGTTGTTGAATTTGAAATGTTGTTTTTGGATTATTATCTGTTAAGTTTGTTAGAAATTGGGCTGCTTAATGTTTTAGTGTAGTATAATAAATGCAACCAAGTTACTATGTCAATGCTTCCAATCAATATATTAGGAACAAATAGATCCTTCACATTTTCACTCCTTTATTGGCTTCACAATTGCTGTACCTCTGTACTACTCCCGCATCAGAGTGCAAATAGAATATTTTTTTAATACTTCCTAGTTCTAGCAACAATCGTGCTCAAGGACTTCTTTTTTTATTTGCCTGATTGATTTTATGCAATATCTGGGTTAGGGAAGCTATTTTAACGCGGGTTTGTATTTTTTTGTCCAAAAGTGTAGATTGTTGCTTGTTATCGTCTCTAATGTGTTTCCTTGCAGTGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAGGTAAATTTGTGGCTTTTAGATATGCACCATGTTAGATTTTCTTTTCAATAATGTTGGCTCCTGCACCTAATACTGTCGGAAACTTCTAATGCCCCACATAAAGCATAGAGCAGCCTTCATTTCAGTAATCCATTGACTTGTTTGGTTAATATTATTTTGATTGAATTTCGTCTAGTTATATTTTCTTCGTCTTGGCTGGGTATATCTTTGATGTGGAGTAAGATTATTGGATTAGTTCTTTGATTTGATGCTGTCTGCTGCCTCTTGTCACTGTCTGCACTCTGCTGTCATAATTTGTTTGTTAAGAAGTAATTCGATTCATCACTCTCCAATCTTAGCTTTGTAGTTTGTTTTTTCTACCCCTTCCACTATTTCTGATATCAACATTTCATCTTTGTCATCAACTGTTGTCTCCCAAAGAAATTGGGGCTAACTCAATTTCGAAAGCTAGCTCATGAAGTTGATCAAAAACATAAAGTTAGCTCATGAAGTGAGGAAAAGTACGACTTAAAAGATTACAACCCATTCCCTCACCTGATGTGGGACATTCAGACACCCGGTCCGCTAGGTCTAAACAACTAGAGCTTGAATAACACATATTGGAGGCTCAACATTGAATAACCAAACAGTAGGATGGATCTTGCTTTATACTACACAATGTGATAAGAGATGAATATGGGAATTCTGAGCTTGAATATCCCTGAAGGTATCTTGGTTTAGATAGTGGTGTATACGAAGGTTGGATAGCATCAGAACAAACATCATAGGATCCTCTAATATACTAACGATCTCCCTAACTTATCTAAGTGATATATACAGTAACATCCTCAATTACAGTTTTTTACATAATAATATTCTTGAATAACACCGTAAACACATAGCTGCTTATCAAAAACGAAAAAAAGCGGAGTGATGCATATACTTTTGGGGAACCACCATACTACCTTGACATAGATGTCTTCTGTTGTTTGAGATATAATCTGATTCTTATGGAGTGTTTTCTTCGGTTGCTTCTTTTTACTTTGAGCAGATTAATATGGTCTTGTCGACCTGATGCTTCAGGTTTGTGGTATCTTCTATCCTTCCTTCACTACTGTTATTGATTAGTTGTCATACCAATTTCTTTGCTTTAAAACAAACTATATGTGATTTCAGTTTTCATGCCCTACAGTTAATTATTTGTCATTCCTTTAATGCAGAATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATG</genome_strand>
        <mrna_strand>ACCGCTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAG....................................................................................................GGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAATTGCTG............................................................................................................................................................................TTGCTGCTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAAAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGATTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCCACAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATACCAATGATCAATACTTAGCCCCTTTTGTTATTGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E554113" ref_strand="+" ref_description="SGN-E554113 [cTSC-3-E16]">
      <seq>tcctaagcttcctaagggaaagactgttgctgttattgttttggatggttggggtgaggctaaacctaatgagtataacgctatctctgttgctgaaactcctgttatggactcactcaagaagggtgctcctgaacattggagattgattaaggcacatggaaatgctgtggggcttcccacagaggatgatatgggtaacagtgaagttggtcacaatgctcttggggctggaaggatctttgctcaaggtgcaaagcttgttgacctagcccttgcctctgggaaaatctatgatggagaaggtttcaaatacgttcaagaatgttttgagaaaggaactctgcaccttattgggctcgtgagtgatgggggtgtccactccaggcttgaccaactgctgttgctactgaaaggtgctgctgagcgtggtgccaaaagaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggcttcatggagaccctcgagaatgatctagcaaaattacgtggacaaggtgttgatgcccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgttatgagaatgactgggatgtcgtaaaaagaggttgggatgcactagttcttggtgaggctccacaccatttcaaggatcccgttgaggcaattaagaagttgaaggcaggaacccaatgccaatgatcaatacttaaccccttttgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="12434" stop="9137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12134" g_stop="12011" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12010" i_stop="11911" i_length="100">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11910" g_stop="11783" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="252" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11782" i_stop="11305" i_length="478">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11304" g_stop="11154" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="403" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11153" i_stop="10982" i_length="172">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10981" g_stop="10778" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="607" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10777" i_stop="9579" i_length="1199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9578" g_stop="9437" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="750" r_length="143" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E554113" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12134" e_stop="12011"/>
          <exon e_start="11910" e_stop="11783"/>
          <exon e_start="11304" e_stop="11154"/>
          <exon e_start="10981" e_stop="10778"/>
          <exon e_start="9578" e_stop="9437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAGGTCTATTGGATTGGATTTCCTTCTTTTTGTGTTAAAGATTCTTGCTTTATGGATTTACGACTTGTTTATTTATCTGGGTTTTTGTTAAAATTAATTATAGGGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGGGTATGCGCTCTTTTCTTATAATCTTTTGTTTGCCTTTTGAAAAAAAAAATATGTTTTTACTTTAGAGATCTTGTAGGTTGTTGAATTTGAAATGTTGTTTTTGGATTATTATCTGTTAAGTTTGTTAGAAATTGGGCTGCTTAATGTTTTAGTGTAGTATAATAAATGCAACCAAGTTACTATGTCAATGCTTCCAATCAATATATTAGGAACAAATAGATCCTTCACATTTTCACTCCTTTATTGGCTTCACAATTGCTGTACCTCTGTACTACTCCCGCATCAGAGTGCAAATAGAATATTTTTTTAATACTTCCTAGTTCTAGCAACAATCGTGCTCAAGGACTTCTTTTTTTATTTGCCTGATTGATTTTATGCAATATCTGGGTTAGGGAAGCTATTTTAACGCGGGTTTGTATTTTTTTGTCCAAAAGTGTAGATTGTTGCTTGTTATCGTCTCTAATGTGTTTCCTTGCAGTGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAGGTAAATTTGTGGCTTTTAGATATGCACCATGTTAGATTTTCTTTTCAATAATGTTGGCTCCTGCACCTAATACTGTCGGAAACTTCTAATGCCCCACATAAAGCATAGAGCAGCCTTCATTTCAGTAATCCATTGACTTGTTTGGTTAATATTATTTTGATTGAATTTCGTCTAGTTATATTTTCTTCGTCTTGGCTGGGTATATCTTTGATGTGGAGTAAGATTATTGGATTAGTTCTTTGATTTGATGCTGTCTGCTGCCTCTTGTCACTGTCTGCACTCTGCTGTCATAATTTGTTTGTTAAGAAGTAATTCGATTCATCACTCTCCAATCTTAGCTTTGTAGTTTGTTTTTTCTACCCCTTCCACTATTTCTGATATCAACATTTCATCTTTGTCATCAACTGTTGTCTCCCAAAGAAATTGGGGCTAACTCAATTTCGAAAGCTAGCTCATGAAGTTGATCAAAAACATAAAGTTAGCTCATGAAGTGAGGAAAAGTACGACTTAAAAGATTACAACCCATTCCCTCACCTGATGTGGGACATTCAGACACCCGGTCCGCTAGGTCTAAACAACTAGAGCTTGAATAACACATATTGGAGGCTCAACATTGAATAACCAAACAGTAGGATGGATCTTGCTTTATACTACACAATGTGATAAGAGATGAATATGGGAATTCTGAGCTTGAATATCCCTGAAGGTATCTTGGTTTAGATAGTGGTGTATACGAAGGTTGGATAGCATCAGAACAAACATCATAGGATCCTCTAATATACTAACGATCTCCCTAACTTATCTAAGTGATATATACAGTAACATCCTCAATTACAGTTTTTTACATAATAATATTCTTGAATAACACCGTAAACACATAGCTGCTTATCAAAAACGAAAAAAAGCGGAGTGATGCATATACTTTTGGGGAACCACCATACTACCTTGACATAGATGTCTTCTGTTGTTTGAGATATAATCTGATTCTTATGGAGTGTTTTCTTCGGTTGCTTCTTTTTACTTTGAGCAGATTAATATGGTCTTGTCGACCTGATGCTTCAGGTTTGTGGTATCTTCTATCCTTCCTTCACTACTGTTATTGATTAGTTGTCATACCAATTTCTTTGCTTTAAAACAAACTATATGTGATTTCAGTTTTCATGCCCTACAGTTAATTATTTGTCATTCCTTTAATGCAGAATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTG-AGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTG</genome_strand>
        <mrna_strand>TCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAG....................................................................................................GGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGGCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG............................................................................................................................................................................TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACTAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAAGGCAGGAACCCAATGCCAATGATCAATACTTAACCCCTTTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E334308" ref_strand="+" ref_description="SGN-E334308 [cTOD-21-G24]">
      <seq>tctcttctctcttctataccgcttaagaatttttaagatctgagataatgggtagttcaggagatgcatggaaattgaaggaccatcctaagcttcctaagggaaagactgttgctgttattgttttggatggttggggtgaggctaaacctaatgagtataacgctatctctgttgctgaaactcctgttatggactcactcaagaagggtgctcctgaacattggagattgattaaggcacatggaaatgctgtggggcttcccacagaggatgatatgggtaacagtgaagttggtcacaatgctcttggggctggaaggatctttgctcaaggtgcaaagcttgttgacctagcccttgcctctgggaaaatctatgatggagaaggtttcaaatacgttcaagaatgttttgagaaaggaactctgcaccttattggtctcgtgagtgatgggggtgtccactccaggcttgaccaactgctgttgctactgaaaggtgctgctgagcgtggtgccaaaagaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggcttcatggagaccctcgagaatgatctagcaaaattacgtggacaaggtgttgatgcccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgttatgagaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="12497" stop="10478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12192" g_stop="12011" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="209" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12010" i_stop="11911" i_length="100">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11910" g_stop="11783" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="337" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11782" i_stop="11305" i_length="478">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11304" g_stop="11154" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="488" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11153" i_stop="10982" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10981" g_stop="10778" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="692" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E334308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12192" e_stop="12011"/>
          <exon e_start="11910" e_stop="11783"/>
          <exon e_start="11304" e_stop="11154"/>
          <exon e_start="10981" e_stop="10778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAGGTCTATTGGATTGGATTTCCTTCTTTTTGTGTTAAAGATTCTTGCTTTATGGATTTACGACTTGTTTATTTATCTGGGTTTTTGTTAAAATTAATTATAGGGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGGGTATGCGCTCTTTTCTTATAATCTTTTGTTTGCCTTTTGAAAAAAAAAATATGTTTTTACTTTAGAGATCTTGTAGGTTGTTGAATTTGAAATGTTGTTTTTGGATTATTATCTGTTAAGTTTGTTAGAAATTGGGCTGCTTAATGTTTTAGTGTAGTATAATAAATGCAACCAAGTTACTATGTCAATGCTTCCAATCAATATATTAGGAACAAATAGATCCTTCACATTTTCACTCCTTTATTGGCTTCACAATTGCTGTACCTCTGTACTACTCCCGCATCAGAGTGCAAATAGAATATTTTTTTAATACTTCCTAGTTCTAGCAACAATCGTGCTCAAGGACTTCTTTTTTTATTTGCCTGATTGATTTTATGCAATATCTGGGTTAGGGAAGCTATTTTAACGCGGGTTTGTATTTTTTTGTCCAAAAGTGTAGATTGTTGCTTGTTATCGTCTCTAATGTGTTTCCTTGCAGTGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG</genome_strand>
        <mrna_strand>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAG....................................................................................................GGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG............................................................................................................................................................................TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E706950" ref_strand="+" ref_description="SGN-E706950 [FA31CE11]">
      <seq>gcgctaaacctaatgagtataacgctatctctgttgctgaaacctcctgttatggactcactcaagaagggtgctcctgaacattggagattgattaaggcacatggaaatgctgtggggcttcccacagaggatgatatgggtaacagtgaagttggtcacaatgctcttggggctggaaggatctttgctcaaggtgcaaagcttgttgacctagcccttgcctctgggaaaatctatgatggagaaggtttcaaatacgttcaagaatgttttgagaaaggaactctgcaccttattggtctcgtgagtgatgggggtgtccactccaggcttgaccaactgctgttgctactgaaaggtgctgctgagcgtggtgccaaaagaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggcttcatggagaccctcgagaatgatctagcaaaattaccgtggacaaggtgttgatgcccgggttgcatctggtggaggccgcatgtatgtcaccatggatcgttatgacaatgactggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="12376" stop="10479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12078" g_stop="12011" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12010" i_stop="11911" i_length="100">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11910" g_stop="11783" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="197" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11782" i_stop="11305" i_length="478">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11304" g_stop="11154" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="348" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11153" i_stop="10982" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10981" g_stop="10778" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="553" r_length="205" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E706950" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12078" e_stop="12011"/>
          <exon e_start="11910" e_stop="11783"/>
          <exon e_start="11304" e_stop="11154"/>
          <exon e_start="10981" e_stop="10778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAA-CTCCTGTTATGGACTCACTCAAGAAGGTCTATTGGATTGGATTTCCTTCTTTTTGTGTTAAAGATTCTTGCTTTATGGATTTACGACTTGTTTATTTATCTGGGTTTTTGTTAAAATTAATTATAGGGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGGGTATGCGCTCTTTTCTTATAATCTTTTGTTTGCCTTTTGAAAAAAAAAATATGTTTTTACTTTAGAGATCTTGTAGGTTGTTGAATTTGAAATGTTGTTTTTGGATTATTATCTGTTAAGTTTGTTAGAAATTGGGCTGCTTAATGTTTTAGTGTAGTATAATAAATGCAACCAAGTTACTATGTCAATGCTTCCAATCAATATATTAGGAACAAATAGATCCTTCACATTTTCACTCCTTTATTGGCTTCACAATTGCTGTACCTCTGTACTACTCCCGCATCAGAGTGCAAATAGAATATTTTTTTAATACTTCCTAGTTCTAGCAACAATCGTGCTCAAGGACTTCTTTTTTTATTTGCCTGATTGATTTTATGCAATATCTGGGTTAGGGAAGCTATTTTAACGCGGGTTTGTATTTTTTTGTCCAAAAGTGTAGATTGTTGCTTGTTATCGTCTCTAATGTGTTTCCTTGCAGTGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTA-CGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG</genome_strand>
        <mrna_strand>GCGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACCTCCTGTTATGGACTCACTCAAGAAG....................................................................................................GGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG............................................................................................................................................................................TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACCGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGCCGCATGTATGTCACCATGGATCGTTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E347785" ref_strand="+" ref_description="SGN-E347785 [cTOF-26-J11]">
      <seq>ttgttttctccctacacacctttttgctctcttctctcttctctcttctataccgcttaagaatttttaagatctgagataatgggtagttcaggagatgcatggaaattgaaggaccatcctaagcttcctaagggaaagactgttgctgttattgttttggatggttggggtgaggctaaacctaatgagtataacgctatctctgttgctgaaactcctgttatggactcactcaagaagggtgctcctgaacattggagattgattaaggcacatggaaatgctgtggggcttcccacagaggatgatatgggtaacagtgaagttggtcacaatgctcttggggctggaaggatctttgctcaaggtgcaaagcttgttgacctagcccttgcctctgggaaaatctatgatggagaaggtttcaaatacgttcaagaatgttttgagaaaggaactctgcaccttattggtctcgtgagtgatgggggtgtccactccaggcttgaccaactgctgttgctactgaaaggtgctgctgagcgtggtgccaaaagaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggcttcatggagaccctcgagaatgatctagcaaaattacgtggacaaggtgttgatgccccggttgcatctggtggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="12497" stop="10510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12192" g_stop="12011" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="243" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12010" i_stop="11911" i_length="100">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11910" g_stop="11783" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="371" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11782" i_stop="11305" i_length="478">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11304" g_stop="11154" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="522" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11153" i_stop="10982" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10981" g_stop="10810" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="694" r_length="172" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E347785" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12192" e_stop="12011"/>
          <exon e_start="11910" e_stop="11783"/>
          <exon e_start="11304" e_stop="11154"/>
          <exon e_start="10981" e_stop="10810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAGGTCTATTGGATTGGATTTCCTTCTTTTTGTGTTAAAGATTCTTGCTTTATGGATTTACGACTTGTTTATTTATCTGGGTTTTTGTTAAAATTAATTATAGGGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGGGTATGCGCTCTTTTCTTATAATCTTTTGTTTGCCTTTTGAAAAAAAAAATATGTTTTTACTTTAGAGATCTTGTAGGTTGTTGAATTTGAAATGTTGTTTTTGGATTATTATCTGTTAAGTTTGTTAGAAATTGGGCTGCTTAATGTTTTAGTGTAGTATAATAAATGCAACCAAGTTACTATGTCAATGCTTCCAATCAATATATTAGGAACAAATAGATCCTTCACATTTTCACTCCTTTATTGGCTTCACAATTGCTGTACCTCTGTACTACTCCCGCATCAGAGTGCAAATAGAATATTTTTTTAATACTTCCTAGTTCTAGCAACAATCGTGCTCAAGGACTTCTTTTTTTATTTGCCTGATTGATTTTATGCAATATCTGGGTTAGGGAAGCTATTTTAACGCGGGTTTGTATTTTTTTGTCCAAAAGTGTAGATTGTTGCTTGTTATCGTCTCTAATGTGTTTCCTTGCAGTGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAG</genome_strand>
        <mrna_strand>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAG....................................................................................................GGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG............................................................................................................................................................................TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCCGGTTGCATCTGGTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E285392" ref_strand="+" ref_description="SGN-E285392 [cLER-20-D8]">
      <seq>tttttgctctcttctctcttctctcttctataccgcttaagaatttttaagatctgagataatgggtagttcaggagatgcatggaaattgaaggaccatcctaagcttcctaagggaaagactgttgctgttattgttttggatggttggggtgaggctaaacctaatgagtataacgctatctctgttgctgaaactcctgttatggactcactcaagaagggtgctcctgaacattggagattgattaaggcacatggaaatgctgtggggcttcccacagaggatgatatgggtaacagtgaagttggtcacaatgctcttggggctggaaggatctttgctcaaggtgcaaagcttgttgacctagcccttgcctctgggaaaatctataatggagaaggtttcaaatacgttcaagaatgttatgagaaaggaactctgcaccttattggtctcgtgagtgatgggggtgtccactccaggcttgaccaactgctgttgctactgaaaggtgctgctgagcgtggtgccaaaagaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggcttcatggagaccctcgagaatgatctagcaaaattacgtggacaaggtgttgatgcccgggttgcatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="12497" stop="10516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12192" g_stop="12011" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="223" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12010" i_stop="11911" i_length="100">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11910" g_stop="11783" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="351" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11782" i_stop="11305" i_length="478">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11304" g_stop="11154" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="502" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11153" i_stop="10982" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10981" g_stop="10816" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="668" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E285392" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12192" e_stop="12011"/>
          <exon e_start="11910" e_stop="11783"/>
          <exon e_start="11304" e_stop="11154"/>
          <exon e_start="10981" e_stop="10816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAGGTCTATTGGATTGGATTTCCTTCTTTTTGTGTTAAAGATTCTTGCTTTATGGATTTACGACTTGTTTATTTATCTGGGTTTTTGTTAAAATTAATTATAGGGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGGGTATGCGCTCTTTTCTTATAATCTTTTGTTTGCCTTTTGAAAAAAAAAATATGTTTTTACTTTAGAGATCTTGTAGGTTGTTGAATTTGAAATGTTGTTTTTGGATTATTATCTGTTAAGTTTGTTAGAAATTGGGCTGCTTAATGTTTTAGTGTAGTATAATAAATGCAACCAAGTTACTATGTCAATGCTTCCAATCAATATATTAGGAACAAATAGATCCTTCACATTTTCACTCCTTTATTGGCTTCACAATTGCTGTACCTCTGTACTACTCCCGCATCAGAGTGCAAATAGAATATTTTTTTAATACTTCCTAGTTCTAGCAACAATCGTGCTCAAGGACTTCTTTTTTTATTTGCCTGATTGATTTTATGCAATATCTGGGTTAGGGAAGCTATTTTAACGCGGGTTTGTATTTTTTTGTCCAAAAGTGTAGATTGTTGCTTGTTATCGTCTCTAATGTGTTTCCTTGCAGTGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTG</genome_strand>
        <mrna_strand>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAG....................................................................................................GGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATAATGGAGAAGGTTTCAAATACGTTCAAGAATGTTATGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG............................................................................................................................................................................TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E333731" ref_strand="+" ref_description="SGN-E333731 [cTOD-22-C12]">
      <seq>tctcttctctcttctataccgcttaagaatttttaagatctgagataatgggtagttcaggagatgcatggaaattgaaggaccatcctaagcttcctaagggaaagactgttgctgttattgttttggatggttggggtgaggctaaacctaatgagtataacgctatctctgttgctgaaactcctgttatggactcactcaagaagggtgctcctgaacattggagattgattaaggcacatggaaatgctgtggggcttcccacagaggatgatatgggtaacagtgaagttggtcacaatgctcttggggctggaaggatctttgctcaaggtgcaaagcttgttgacctagcccttgcctctgggaaaatctatgatggagaaggtttcaaatacgttcaagaatgttttgagaaaggaactctgcaccttattggtctcgtgagtgatgggggtgtccactccaggcttgaccaactgctgttgctactgaaaggtgctgctgagcgtggtgccaaaagaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggcttcatggagaccctcgagaatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="12497" stop="10560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12192" g_stop="12011" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="209" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12010" i_stop="11911" i_length="100">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11910" g_stop="11783" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="337" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11782" i_stop="11305" i_length="478">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11304" g_stop="11154" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="488" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11153" i_stop="10982" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10981" g_stop="10860" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="610" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E333731" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12192" e_stop="12011"/>
          <exon e_start="11910" e_stop="11783"/>
          <exon e_start="11304" e_stop="11154"/>
          <exon e_start="10981" e_stop="10860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAGGTCTATTGGATTGGATTTCCTTCTTTTTGTGTTAAAGATTCTTGCTTTATGGATTTACGACTTGTTTATTTATCTGGGTTTTTGTTAAAATTAATTATAGGGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGGGTATGCGCTCTTTTCTTATAATCTTTTGTTTGCCTTTTGAAAAAAAAAATATGTTTTTACTTTAGAGATCTTGTAGGTTGTTGAATTTGAAATGTTGTTTTTGGATTATTATCTGTTAAGTTTGTTAGAAATTGGGCTGCTTAATGTTTTAGTGTAGTATAATAAATGCAACCAAGTTACTATGTCAATGCTTCCAATCAATATATTAGGAACAAATAGATCCTTCACATTTTCACTCCTTTATTGGCTTCACAATTGCTGTACCTCTGTACTACTCCCGCATCAGAGTGCAAATAGAATATTTTTTTAATACTTCCTAGTTCTAGCAACAATCGTGCTCAAGGACTTCTTTTTTTATTTGCCTGATTGATTTTATGCAATATCTGGGTTAGGGAAGCTATTTTAACGCGGGTTTGTATTTTTTTGTCCAAAAGTGTAGATTGTTGCTTGTTATCGTCTCTAATGTGTTTCCTTGCAGTGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCT</genome_strand>
        <mrna_strand>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAG....................................................................................................GGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG............................................................................................................................................................................TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E395854" ref_strand="+" ref_description="SGN-E395854 [TUS-18-A19]">
      <seq>tttttttttttaataaatatattagttatacactattagcaatacacaggctagtataattgtacattgataagcatgagtagttatagaacgatttttaatacatcaaattaaatattagaaaaaagtaattttaacataactaaattcaatattattaatatatactctatcaaacggtctcataatttcctaattaacatacaactttttctttttttcaccacatgcattagaaacaaactccaacacgtttgataccacttgttgaaccccattagcacatgttgtatccacaacaagtcttggaacctccaccccaacatcataatcccaacacccttcatacccttccaacaacttctccatttcttgccacgtggatggcttatgccagcttgagccatattccaccagctcacccctcagctcgagccgcctacgccacttggcttgatcccgcgggggggggggcactacaacaacctgagccccactatgattcgcgatctcaatgatccggtcaaggtgagctcgacgtgagagtggtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="+" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="14746" stop="15894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15042" g_stop="15594" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="+" ref_id="SGN-E395854" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15042" e_stop="15594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTAATTAATAAATATATTAGTTATACACTATTAGCAATACACAGGCTATTATAAATGTACATTGATAAGCATGAGTAGTTATAGAACGATTTTTAATACATCAAATTAAATATTAGAAAAAAGTAATTTTAACATAACTAAATTCAATATTATTAATATATACTCTATCAAACGGTCTCATAATTTCCTAATTAACATACAACTTTTTCTTTTTTTCACCACATGCATTAGAAACAAACTCCAACACGTTTGATACCACTTGTTGAACCCCATTAGCACATGTTGTATCCACAACAAGTCTTGGAACCTCCACCCCAACATCATAATCCCAACACCCTTCATACCCTTCCAACAACTTCTCCATTTCTTGCCACGTGGATGGCTTATGCCAGCTTGAGCCATATTCCACCAGCTCACCCCTCAGCTCGAGCCGCCTACGCCACTTGGCTTGATCCCTCGGCTTGCACTCCACTACAACAACCTGAGCCCCACTATGATTCGCGATCTCAATGATCCGGTCAAGGTGAGCTCGACGTGAGAGTGGTGAG</genome_strand>
        <mrna_strand>TTTTTTTTTTTAATAAATATATTAGTTATACACTATTAGCAATACACAGGCTAGTATAATTGTACATTGATAAGCATGAGTAGTTATAGAACGATTTTTAATACATCAAATTAAATATTAGAAAAAAGTAATTTTAACATAACTAAATTCAATATTATTAATATATACTCTATCAAACGGTCTCATAATTTCCTAATTAACATACAACTTTTTCTTTTTTTCACCACATGCATTAGAAACAAACTCCAACACGTTTGATACCACTTGTTGAACCCCATTAGCACATGTTGTATCCACAACAAGTCTTGGAACCTCCACCCCAACATCATAATCCCAACACCCTTCATACCCTTCCAACAACTTCTCCATTTCTTGCCACGTGGATGGCTTATGCCAGCTTGAGCCATATTCCACCAGCTCACCCCTCAGCTCGAGCCGCCTACGCCACTTGGCTTGATCCCGCGGGGGGGGGGGCACTACAACAACCTGAGCCCCACTATGATTCGCGATCTCAATGATCCGGTCAAGGTGAGCTCGACGTGAGAGTGGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E379565" ref_strand="+" ref_description="SGN-E379565 [TUS-3-D1]">
      <seq>gataagcatgagtagttctagaacgatttttaatacatcaaattaaatattagaaaaaagtaattttaacataactaaattcaatattattaatatatactctatcaaacggtctcataatttcctaattaacatacaactttttctttttttcaccacatgcattagaaacaaactccaacacgtttgataccacttgttgaaccccattagcacatgttgtatccacaacaagtcttggaacctccaccccaacatcataatcccaacacccttcatacccttccaacaacttctccatttcttgccacgtggatggcttatgccagcttgagccatattccaccagctcacccctcagctcgagccgcctacgccacttggcttgatccctcggcttgcactccactacaacaacctgagccccactatgattcgcgatctcaatgatccggtcaaggtgagctcgacgtgagagtggtgagtcgatcaccacgctcagacctaagtctagctgagcggaggcgactcgccacatggcatcgtatgataggtcattgatgagttttgtggctttagtgatttgttgaagtggtttagtgcaatctttgaagtgatctttgtctataagaggacattttagggttttagctatggattgtgcaagtgtgctcttacctgtccctggatggcctttcatagccaaaatcattggcctttctccatattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="+" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="14810" stop="16141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15110" g_stop="15841" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="+" ref_id="SGN-E379565" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15110" e_stop="15841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAGCATGAGTAGTTATAGAACGATTTTTAATACATCAAATTAAATATTAGAAAAAAGTAATTTTAACATAACTAAATTCAATATTATTAATATATACTCTATCAAACGGTCTCATAATTTCCTAATTAACATACAACTTTTTCTTTTTTTCACCACATGCATTAGAAACAAACTCCAACACGTTTGATACCACTTGTTGAACCCCATTAGCACATGTTGTATCCACAACAAGTCTTGGAACCTCCACCCCAACATCATAATCCCAACACCCTTCATACCCTTCCAACAACTTCTCCATTTCTTGCCACGTGGATGGCTTATGCCAGCTTGAGCCATATTCCACCAGCTCACCCCTCAGCTCGAGCCGCCTACGCCACTTGGCTTGATCCCTCGGCTTGCACTCCACTACAACAACCTGAGCCCCACTATGATTCGCGATCTCAATGATCCGGTCAAGGTGAGCTCGACGTGAGAGTGGTGAGTCGATCACCACGCTCAGACCTAAGTCTAGCTGAGCGGAGGCGACTCGCCACATGGCATCGTATGATAGGTCATTGATGAGTTTTGTGGCTTTAGTGATTTGTTGAAGTGGTTTAGTGCAATCTTTGAAGTGATCTTTGTCTATAAGAGGACATTTTAGGGTTTTAGCTATGGATTGTGCAAGTGTGCTCTTACCTGTCCCTGGATGGCCTTTCATAGCCAAAATCATTGGCCTTTCTCCATATTTTC</genome_strand>
        <mrna_strand>GATAAGCATGAGTAGTTCTAGAACGATTTTTAATACATCAAATTAAATATTAGAAAAAAGTAATTTTAACATAACTAAATTCAATATTATTAATATATACTCTATCAAACGGTCTCATAATTTCCTAATTAACATACAACTTTTTCTTTTTTTCACCACATGCATTAGAAACAAACTCCAACACGTTTGATACCACTTGTTGAACCCCATTAGCACATGTTGTATCCACAACAAGTCTTGGAACCTCCACCCCAACATCATAATCCCAACACCCTTCATACCCTTCCAACAACTTCTCCATTTCTTGCCACGTGGATGGCTTATGCCAGCTTGAGCCATATTCCACCAGCTCACCCCTCAGCTCGAGCCGCCTACGCCACTTGGCTTGATCCCTCGGCTTGCACTCCACTACAACAACCTGAGCCCCACTATGATTCGCGATCTCAATGATCCGGTCAAGGTGAGCTCGACGTGAGAGTGGTGAGTCGATCACCACGCTCAGACCTAAGTCTAGCTGAGCGGAGGCGACTCGCCACATGGCATCGTATGATAGGTCATTGATGAGTTTTGTGGCTTTAGTGATTTGTTGAAGTGGTTTAGTGCAATCTTTGAAGTGATCTTTGTCTATAAGAGGACATTTTAGGGTTTTAGCTATGGATTGTGCAAGTGTGCTCTTACCTGTCCCTGGATGGCCTTTCATAGCCAAAATCATTGGCCTTTCTCCATATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E213945" ref_strand="+" ref_description="SGN-E213945 [cLEC-80-M9]">
      <seq>acaatccatagctaaaaccctaaaatgtcctcttatagacaaagatcacttcaaagattgcactaaaccacttcaacaaatcactaaagccacaaaactcatcaatgacctatcatacgatgccatgtggcgagtcgcctccgctcagctagacttaggtctgagcgtggtgatcgactcaccactctcacgtcgagctcaccttgaccggatcattgagatcgcgaatcatagtggggctcaggttgttgtagtggagtgcaagccgagggatcaagccaagtggcgtaggcggctcgagctgaggggtgagctggtggaatatggctcaagctggcataagccatccacgtggcaagaaatggagaagttgttggaagggtatgaagggtgttgggattatgatgtggggggtgggaagttccaangacttgttgtggatacaacatgtgctaatggggttcaacaagtggtatcaaacgtgnttggagtttgtttctaatgcatgtggtgaaaaaaagaaaaagttgtatgttaattaggaaattatgagaccgtttgatagagtatatattaataatattgaatttagttatgttaaaattacttttttctaatatttaatttgatgtattaaaaatcgttctataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="16071" stop="14825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15771" g_stop="15115" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E213945" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15771" e_stop="15115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGT-TGGGGT-GGAGGTTCCAA-GACTTGTTGTGGATACAACATGTGCTAATGGGGTTCAACAAGTGGTATCAAACGTG-TTGGAGTTTGTTTCTAATGCATGTGGTGAAAAAAAGAAAAAGTTGTATGTTAATTAGGAAATTATGAGACCGTTTGATAGAGTATATATTAATAATATTGAATTTAGTTATGTTAAAATTACTTTTTTCTAATATTTAATTTGATGTATTAAAAATCGTTCTATAACTACTCATGC</genome_strand>
        <mrna_strand>ACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGTGGGGGGTGGGAAGTTCCAANGACTTGTTGTGGATACAACATGTGCTAATGGGGTTCAACAAGTGGTATCAAACGTGNTTGGAGTTTGTTTCTAATGCATGTGGTGAAAAAAAGAAAAAGTTGTATGTTAATTAGGAAATTATGAGACCGTTTGATAGAGTATATATTAATAATATTGAATTTAGTTATGTTAAAATTACTTTTTTCTAATATTTAATTTGATGTATTAAAAATCGTTCTATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E212029" ref_strand="+" ref_description="SGN-E212029 [cLEC-66-F18]">
      <seq>tcttatagacaaagatcacttcaaagattgcactaaaccacttcaacaaatcactaaagccacaaaactcatcaatgacctatcatacgatgccatgtggcgagtcgcctccgctcagctagacttaggtctgagcgtggtgatcgactcaccactctcacgtcgagctcaccttgaccggatcattgagatcgcgaatcatagtggggctcaggttgttgtagtggagtgcaagccgagggatcaagccaagtggcgtaggcggctcgagctgaggggtgagctggtggaatatggctcaagctggcataagccatccacgtggcaagaaatggagaagttgttggaagggtatgaagggtgttgggattatgatgttggggtggaggttccaagacttgttgtggatacaacatgtgctaatggggttcaacaagtggtatcaaacgtgttggagtttgtttctaatgcatgtggtgaaaaaaagaaaaagttgtatgttaattangaaattatgagaccgtttgatagagtatatattaataatattgaatttagttatgttaaaattacttttttctaatatttaatttgatggattaaaaatcgttctataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="16041" stop="14825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15741" g_stop="15116" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E212029" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15741" e_stop="15116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGTTGGGGTGGAGGTTCCAAGACTTGTTGTGGATACAACATGTGCTAATGGGGTTCAACAAGTGGTATCAAACGTGTTGGAGTTTGTTTCTAATGCATGTGGTGAAAAAAAGAAAAAGTTGTATGTTAATTAGGAAATTATGAGACCGTTTGATAGAGTATATATTAATAATATTGAATTTAGTTATGTTAAAATTACTTTTTTCTAATATTTAATTTGATGTATTAAAAATCGTTCTATAACTACTCATG</genome_strand>
        <mrna_strand>TCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGTTGGGGTGGAGGTTCCAAGACTTGTTGTGGATACAACATGTGCTAATGGGGTTCAACAAGTGGTATCAAACGTGTTGGAGTTTGTTTCTAATGCATGTGGTGAAAAAAAGAAAAAGTTGTATGTTAATTANGAAATTATGAGACCGTTTGATAGAGTATATATTAATAATATTGAATTTAGTTATGTTAAAATTACTTTTTTCTAATATTTAATTTGATGGATTAAAAATCGTTCTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E378833" ref_strand="+" ref_description="SGN-E378833 [TUS-3-D1]">
      <seq>tcaaatggacaatggaaaatatggagaaaggccaatgattttggctatgaaaggccatccagggacaggtaagagcacacttgcacaatccatagctaaaaccctaaaatgtcctcttatagacaaagatcacttcaaagattgcactaaaccacttcaacaaatcactaaagccacaaaactcatcaatgacctatcatacgatgccatgtggcgagtcgcctccgctcagctagacttaggtctgagcgtggtgatcgactcaccactctcacgtcgagctcaccttgaccggatcattgagatcgcgaatcatagtggggctcaggttgttgtagtggagtgcaagccgagggatcaagccaagtggcgtaggcggctcgagctgaggggtgagctggtggaatatggctcaagctggcataagccatccacgtggcaagaaatggagaagttgttggaagggtatgaagggtgttgggattatgatgttggggggtggaggttccaagacttgttgtggatacaacatgtgctaatggggttcaacaagtggtatcaaacgtgttggagtttgtttctaatgcatgtggtgaaaaaaagaaaagttgtatgttaattaggaaattatgagaccgtttgatagagtatatattaataatattgaatttagttatgttaaaattacttttttctaatatttaaattgatgtattannaatcgttctataactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="16155" stop="14821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15855" g_stop="15121" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E378833" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15855" e_stop="15121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGGACAATGGAAAATATGGAGAAAGGCCAATGATTTTGGCTATGAAAGGCCATCCAGGGACAGGTAAGAGCACACTTGCACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGTT--GGGGTGGAGGTTCCAAGACTTGTTGTGGATACAACATGTGCTAATGGGGTTCAACAAGTGGTATCAAACGTGTTGGAGTTTGTTTCTAATGCATGTGGTGAAAAAAAGAAAAAGTTGTATGTTAATTAGGAAATTATGAGACCGTTTGATAGAGTATATATTAATAATATTGAATTTAGTTATGTTAAAATTACTTTTTTCTAATATTTAATTTGATGTATTAAAAATCGTTCTATAACTAC</genome_strand>
        <mrna_strand>TCAAATGGACAATGGAAAATATGGAGAAAGGCCAATGATTTTGGCTATGAAAGGCCATCCAGGGACAGGTAAGAGCACACTTGCACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGTTGGGGGGTGGAGGTTCCAAGACTTGTTGTGGATACAACATGTGCTAATGGGGTTCAACAAGTGGTATCAAACGTGTTGGAGTTTGTTTCTAATGCATGTGGTGAAAAAAAG-AAAAGTTGTATGTTAATTAGGAAATTATGAGACCGTTTGATAGAGTATATATTAATAATATTGAATTTAGTTATGTTAAAATTACTTTTTTCTAATATTTAAATTGATGTATTANNAATCGTTCTATAACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E208959" ref_strand="+" ref_description="SGN-E208959 [cLEC-38-A20]">
      <seq>tcaaatggacaatggaaaatatggagaaaggccaatgattttggctatgaaaggccatccagggacaggtaagagcacacttgcacaatccatagctaaaaccctaaaatgtcctcttatagacaaagatcacttcaaagattgcactaaaccacttcaacaaatcactaaagccacaaaactcatcaatgacctatcatacgatgccatgtggcgagtcgcctccgctcagctagacttaggtctgagcgtggtgatcgactcaccactctcacgtcgagctcaccttgaccggatcattgagatcgcgaatcatagtggggctcaggttgttgtagtggagtgcaagccgagggatcaagccaagtggcgtaggcggctcgagctgaggggtgagctggtggaatatggctcaagctggcataagccatccacgtggcaagaaatggagaagttgttggaagggtatgaagggtgttgggattatgatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="16155" stop="15062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15855" g_stop="15362" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E208959" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15855" e_stop="15362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGGACAATGGAAAATATGGAGAAAGGCCAATGATTTTGGCTATGAAAGGCCATCCAGGGACAGGTAAGAGCACACTTGCACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGTTG</genome_strand>
        <mrna_strand>TCAAATGGACAATGGAAAATATGGAGAAAGGCCAATGATTTTGGCTATGAAAGGCCATCCAGGGACAGGTAAGAGCACACTTGCACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E395788" ref_strand="+" ref_description="SGN-E395788 [TUS-18-A19]">
      <seq>atcaaatggacaatggaaaatatggagaaaggccaatgattttggctatgaaaggccatccagggacaggtaagagcacacttgcacaatccatagctaaaaccctaaaatgtcctcttatagacaaagatcacttcaaagattgcactaaaccacttcaacaaatcactaaagccacaaaactcatcaatgacctatcatacgatgccatgtggcgagtcgcctccgctcagctagacttaggtctgagcgtggtgatcgactcaccactctcacgtcgagctcaccttgaccggatcattgagatcgcgaatcatagtggggctcaggttgttgtagtggagtgcaagccgagggatcaagccaagtggcgtaggcggctcgagctgaggggtgagctggtggaggggggggggggctggcataacccatccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="16156" stop="15151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15856" g_stop="15421" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E395788" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15856" e_stop="15421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATGGACAATGGAAAATATGGAGAAAGGCCAATGATTTTGGCTATGAAAGGCCATCCAGGGACAGGTAAGAGCACACTTGCACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCAC</genome_strand>
        <mrna_strand>ATCAAATGGACAATGGAAAATATGGAGAAAGGCCAATGATTTTGGCTATGAAAGGCCATCCAGGGACAGGTAAGAGCACACTTGCACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAGGGGGGGGGGGGCTGGCATAACCCATCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="26306" stop="25470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26006" g_stop="25770" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26006" e_stop="25770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACCGAAATCCCAAATGAGCATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGT-GTTTGTACTGACCCCCTACTTTTATGGTTTCTTTCCTTGTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGA-CCCCTACTTTTAT-GTTTATCTTCTTGTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="26761" stop="25562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26461" g_stop="26286" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26285" i_stop="26208" i_length="78">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26207" g_stop="25862" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="515" r_length="342" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26461" e_stop="26286"/>
          <exon e_start="26207" e_stop="25862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCAGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGGTGCCACGTTCCGGTATCAGGATAGAATATGGATCGGGTGTCACGTTTCGACACCAGGATAGAATATGGATCAGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAAGATAATGAATCTTGAAAGATGTTAATATATTCAATCTAATGAACCGAAATCCCAAATGAGCATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAG..............................................................................GATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATAT--GGATCGG-GTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAAT-AAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E220638" ref_strand="-" ref_description="SGN-E220638 [cLEL-12-L22]">
      <seq>ttcacaggtttatatatggcacaaaggctcaggtgaccttgttgcgacactggctggacattcaggggcggtgaattgtgttagctggaacccaacaaatcctcatatgctggcatctgcgagtgatgatggtacaattcgtatatggggcgataatcgagtaaacacaaagcaacatggcactgctaatggtgtgaactactgcaatgggcgaagttgaactctgagatgcaaaagggcagcgtgtaacgttacaaatatctttcatcgctatcactggtttctgtgtatattctgtatgttcatgtcgaatcaacatttatgacaaacaagaatgtgaaatttgcattcagtccattaataaatagtgtactctttcctccatattttagattttcttttccatttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="29178" stop="28173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28876" g_stop="28474" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="410" r_length="403" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="411" polyA_stop="432"/>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E220638" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220638" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28876" e_stop="28474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATATATGGCACAGAGGCTCAGGTGAACTTGTTGCGACACTGGCTGGACATTCAGGGGCGGTGAACTGTGTTAGCTGGAACCCAACAAATCCTCATATGCTGGCATCTGCGAGTGATGATGGTACAATTCGTATATGGGGCGATAATCGAGTAAACACAAAGCAACATGACACTGCTAATGGTGTGAACTACTGCAATGGGCGAAGTTGAACTCTGAGATGCAAAAGGGCAGCGTGTAACGTTACAAATATCTTTCATCGCTATCACTGGTTTCTGTGTATATTCTGTATGTTCATGTCGAATCAACATTTATGACAAACAAGAATGTGAAATTTGCATTCAGTCCATTAATAAATCGTGTACTCTTTCCTCCATATTTTAGATTTTCTTTTCCATTTAA</genome_strand>
        <mrna_strand>GTTTATATATGGCACAAAGGCTCAGGTGACCTTGTTGCGACACTGGCTGGACATTCAGGGGCGGTGAATTGTGTTAGCTGGAACCCAACAAATCCTCATATGCTGGCATCTGCGAGTGATGATGGTACAATTCGTATATGGGGCGATAATCGAGTAAACACAAAGCAACATGGCACTGCTAATGGTGTGAACTACTGCAATGGGCGAAGTTGAACTCTGAGATGCAAAAGGGCAGCGTGTAACGTTACAAATATCTTTCATCGCTATCACTGGTTTCTGTGTATATTCTGTATGTTCATGTCGAATCAACATTTATGACAAACAAGAATGTGAAATTTGCATTCAGTCCATTAATAAATAGTGTACTCTTTCCTCCATATTTTAGATTTTCTTTTCCATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E220527" ref_strand="-" ref_description="SGN-E220527 [cLEL-12-L22]">
      <seq>aatcctcatatgctggcatctgcaagtaatgatggtacaattcgtaaatggggcgataatcgagtaaacacaaagcaacatgacgctgctaatggtgtgaactactgcaatgggcgaagttgaactttaagatgcaaaagggcagcgtgtaacgttacaaatatctttcatcgctatcactggtttctgtgtatattctgtatgttcatgtcgaatcaacatttatgacaaacaagaatgtgaaatttgcattcagtccattaataaatcgtgtactctttcctccatattttagattttcttttccttttaaaaaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="29086" stop="28173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28786" g_stop="28474" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="319" polyA_stop="335"/>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E220527" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220527" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28786" e_stop="28474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTCATATGCTGGCATCTGCGAGTGATGATGGTACAATTCGTATATGGGGCGATAATCGAGTAAACACAAAGCAACATGACACTGCTAATGGTGTGAACTACTGCAATGGGCGAAGTTGAACTCTGAGATGCAAAAGGGCAGCGTGTAACGTTACAAATATCTTTCATCGCTATCACTGGTTTCTGTGTATATTCTGTATGTTCATGTCGAATCAACATTTATGACAAACAAGAATGTGAAATTTGCATTCAGTCCATTAATAAATCGTGTACTCTTTCCTCCATATTTTAGATTTTCTTTTCCATTTAA</genome_strand>
        <mrna_strand>AATCCTCATATGCTGGCATCTGCAAGTAATGATGGTACAATTCGTAAATGGGGCGATAATCGAGTAAACACAAAGCAACATGACGCTGCTAATGGTGTGAACTACTGCAATGGGCGAAGTTGAACTTTAAGATGCAAAAGGGCAGCGTGTAACGTTACAAATATCTTTCATCGCTATCACTGGTTTCTGTGTATATTCTGTATGTTCATGTCGAATCAACATTTATGACAAACAAGAATGTGAAATTTGCATTCAGTCCATTAATAAATCGTGTACTCTTTCCTCCATATTTTAGATTTTCTTTTCCTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E711021" ref_strand="+" ref_description="SGN-E711021 [FA57CH03]">
      <seq>tatggttccagaaaagagattggtacatcttgttgaacaagctcttgacttgcaactagatgcttgtagatttcacaactctgtggttggtgaaatgtcactgctcagtgatcatcactgcggaagagatcatattccatctctaacaatgcagatattacatgaacataaagatgaagtctggttcttgcagttttcccataatggaaagtacttagcctcgtcatctgccgattttgccgtaattatatgggaggtcaaattggatggcagtgtctgcatgaaacacagacttttgggtcacgagacatatgtctcgtatatatcatggagtcctgatgaccatcagcttctcacttgtggtgaagaggaagctgtcattcggtgggatgtcgagtctggtgtacgtatacacacttatgagaaaaaatttgttaagtttatctcatgcggctgggctcctgatggaaaaaggatattctgtggtgtaactgacaaaagcattagcatgtgggatttggaagggaaagagcttgagtgttggaaaggccacagggctactagaatatcggacttggggataacaagtgatgggaagcatgttatctctgtttgtaaagaaaatatgatagtattagttggatgggaatcaaaagtagagagagtaattcaggaggatcaggcaataacctcatttgtattgtccatggacagtaagtatgtgttggttagtctttccaaccaagaaattcatctctggaatatcgagggaactggtaaacttgtagccaaataataagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="39044" stop="30055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38744" g_stop="38591" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38590" i_stop="34657" i_length="3934">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.713" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34656" g_stop="34555" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="256" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34554" i_stop="30901" i_length="3654">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30900" g_stop="30355" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="803" r_length="547" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E711021" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38744" e_stop="38591"/>
          <exon e_start="34656" e_stop="34555"/>
          <exon e_start="30900" e_stop="30355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGTTCCAGAAAAGAGATTGGTACATCTTGTTGAACAAGCTCTTGACTTGCAACTAGATGCTTGTAGATTTCACAACTCTGTGGTTGGTGAAATGTCACTGCTCAGTGATCATCACTGCGGAAGAGATCATATTCCATCTCTAACAATGCAGGTTAATTCACATTAATAATTGGGTGTGCTTTTGATATACAAGCCTTTTGATTCTGCTCTTGATTGTTCGAGTCTGACATGTTCAAGAGAAACTTCATTTTGTGTCTCACACAACAGACACAGGTTGTGTGAGGCTTTGATCTACAAATTACTGGACCCTAGTCTTACACTTTTGGTCCACAAATTTGTGAAACAAAAAGAATCCCCACACAACTTGTGTCAGTTGTGTGAGACACAAAGTAAACTCTTTCCATGTTTCGTCTTGCAATCATGCACTAGTTTGTCCTATCATTATCCGAGTCAATAATTAGTGGAGTTGAATGAATATGATGGGAAATATTGATCAAGTTTTGTTCCTTTGCATTCTAAACAAATGTCATTGTTGTTAAAAGAGTCACCTCTTCTATTTTATGTCAATTATTTGAATGACATATGTTGGCATTAGGATGAAAAGCATTCTGAATTCATGCTTTGTTTCATTCAACTCTTTGTGGTTGAAGGTTTTGCCAATTTTTGCTTATGTTCTTTTGAAAGGCTTGTTTTGATTTGCACCCAAGGGTGTGACCTAGTGGTCATTGACTGGAGACAAAAAACACTAAGTTCCCATCTGTCCTAGACAAAAAACAAAGCATGAAATCATTTTCTTTGTTATGTATTTGTCATTCATGCTTATATTTATTAGTCTTGGATTGATATTTGTACTTTTTCTCCCTTCGTGCCCTTTTTCATTAAAGCCCACACTTCTTTTTGACAAAGGTAACAAATTTGTATATAGTTTTTCAGCACTAAAGACTGGGATCCCAAATTTAGACCGTGGAGCTACATACAGTTGATAGACTCAAAAAATCTTTAAAAACACTAGATTCTACTTCATCTTACAAAGAACCTAGAATACTGGAATAGTTACATGATCATTTACATACTCAGACTACACCAATAGCAAAAAGTGACAAGACAGCTCATTTTTATCCTATGTAAAGGCCCACTAATGCTCTCAAATTTCTCTCCTTCCATATGGTCCACCAAATCACTGTTGGGACAATTCTCCATCAGCTTTTGTCTGCACCGCCACTACCTTTATTGTTCCAACTTTCTATAGCCCGTCTTGCCCTTTATGGTATGGTCCTACTTATGCCCCTAAAGCTGGTAAATAGGTTCCAAAGTTGTCTAACCACCCTGCAGTGAAGAAACAAATGGTTGATTGTCTCTACCTGCTTCTCACAGAAACTGTCTTGGAGACATATGTATTCCCCTCTTCTTGTGATTCTCCTGAGTTAGTTTTGTCTCTTTTACTACCAACCAAGTAAAGATTGCCTCCCTATATGGAATTTTGACTTTCTAGATAAGCTTCCAAGGCAAAAATTTGAGTTGAGTCCCTATCTGGTTCAGATTCTTGTAGGCAGAGCTAACTGTGAAAATACCTTTGCTATGATACATGAGTGTCTTCTCCCTCTTGCAATCCTCCAAATTGGTCTAGGGTGCCACAAAATTTAGCTAATCTATCCATATCCCAGTCTTGCATCATCGTTCTCTATGTTAAGTTCCATCCATGGATGGATCAAACTCCTTCAAAATGGCCTGTTGTTGCTGATTCAACAGATAAATATCTGAAAAAGTAAGAACTGCTTGAGGCTGCCATTTCCTAACCAGCTAATCCTAAACAAAATCTTCCTTCCATTGTTTATACTGGTCTCTGGGAACGTATATTGCACATTTGTCCCTTATTATTATTATTAATATTGTTAAAGCAGAAAGCTAATCAGTACACATTAACCCATGTACAAAATAATTCATAAAATATATACGAGTCAGACATCAGCAAATAATGAAGATACACAAAAATAGTATAAAAAAAGGAAGAAGATTAAGATAAGGTAAAAAGTTAACCTATGATATTGCTGATTGTAGTATGGCAAGTGGAAAAAAATAAAGAAAGTGAAATGTGATACAAAGGAAACAAATTGATATGTGCACGTACTGAGGAATATAAAAAGACAGCAACAATATCTTTACCAATGTAGAAGAGGAAAGAACAAAAGATGAAACGAACTTCTATTTCATATACATAACTTCCATGTCTTTCATATTCATAACCTTCAAATATTTAATGTGTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGATGATGGTGATGATGATGATGATGATTGTATATAGTTCTTTCAATGAAACTTTGCCACAAAATTCTGATTGATCTCCACAGGTTCATACCATAGGGAGAAATTACTTCCTTAGTTGTCTAGTACTCTAATTTTCTCATACTTGGTCTGAATTACTCTTTAACCCATTTAGCCTGCTCCTCTTTAGGAGATCTCCACAACCACTTCATTATTAAGCTTTTGTTCTATTTCCTCAAGTTTATAATGCCTAACCCATCTAGTTTCTTTGAAAGAACTACAGTCTTCCATTTGACCTAATGAAATCCTTTGTTCTCCTTCTTACCATTCCACAAAAACTCCTCCTTAAAGCATCAATTCTTTCTTCTACCCTAGTTGGGAGAGGAAAAAATGACATCTAGTACGTCGGTAGAACATCTAAGACTGAGTGATCAGGAACAATCTTCCACCTCAGACAGATACTATGCTTTCCATCTGGATAGTCTTCTTTCACATCTCTTCACCACCCCATTCAAAATCTCTCTGGATTTGCTTTTGGCTCCCAAAGGCATCCCCAAATAAATTGTTGGTAGTTGACCTATTTCTCCTCCCAAGATCTCTGGCAGATTTACATTCTGTTCACATCATTAATTGGAAAAATATGACCTCCGATTGATATGGAGCCCAATAGTTGCTCTGATTAATCTCCTGGACACACCCAAACAATTCTTACCATTATGCTCCCTCTCAAAAAGAATTTTTTATTAATAATGCAACAAGCTAGTGTCTTCATGGCTCCACAGAAAAAGAAACTATGCAAATTGCTTCAATGTATCTATATGTCACAAGTACATATATAAACTCTCTAGAAGAATAGAATCTTATGTAATATTTTGTTCAGCAAAAAACAAATGAAGAACAGAGATTTGACTCTCCAGCTTTAATGCCGTGGATCTTCAAAGTGCCAGCTCCTTTTGAGTAGTTATTGACAGCGGAACTCTAACTAAAAGCATATTTATTGCAGCCTCGGTCCATGAGCAAATTAATATGGGGAATGCATGCTGTCCTATCATAAGCTTGCTAATGAATGCAGTTTTTATTTACTAATTTGAAAAAAATGAATGCACTTTTATTTTTATGTCCTAGAAAGATGCTGGAGTTAATAGGTAAGCACTATTGATTTCTGGGGAGCTTTGTGATCTTCAGGTCCTTAGTGAGCTTGTGTCCACCATTTCATGTGGCTTTAGTCACAACAATATGAAATGTTTCATGGATTGTTGCCAAACTTTTGAATCAATGAAAGTCAGTACCTGTAGGCACAACATCACATTTTTCGTCTCTTGTGAAATTGGTCTCCCTTTCTCTTGTCATTATATCTTTTTTGTGTAAACAAGTATGTTCTTTTTTTCCTCTAAATTTTGGCTTTGTTTGGGACTGGGGTGTAACTTTTGTTTTGTTCATGTTGTTTATGCCATTTCAAATTGATCTTATATTTGGGAGGTTTAAAGTTTACCAGGAGATGTGGTTGGATCCACTGTGGTTTAAGTGAAAGCAGAAGAAATTGCCTTGGGGTGGGGTGGAGGGGTTAGTTAAAGTGCCAAGGAGTTGTAAATGTGCTTTGATAAAATTGAACTTCACTGGCTTTCTGCTTGTTATCATTTACCGACGAGCTGTTATTTTATAAGTCGTTTTAGAGCAATCTTTGACAGTGGAGTCTGATTTCTTGCAGATACAATATGTTAATCACCTTAAACGCTAATTGTTTCTTCATTGCTTCTACTGCACCAGATATTACATGAACATAAAGATGAAGTCTGGTTCTTGCAGTTTTCCCATAATGGAAAGTACTTAGCCTCGTCATCTGCCGATTTTGCCGTAATTATATGGGAGGTATTTTAAGTTCTCTTTATTTTGTTGTCATATCAGTAGTTGTTTTTCAACTTAGATCAATTGCTACTTTTACTTTTTATCGAATATCTTTTCCTTCATTCTTGCATCTTAGTCACAGCTACCTCCATACTTGATAGGGTCTTCTACTTCTGATTTGAAGGATTAGTAACTTGTGTGCTTCACAGTCTCATGGAGTGCCTCATATGGGTGCTCAAATTTCTGTGGTTTCCGCGACCTCGTGTAGTAATATATTTGAACACAAGGACAGCAAATTATCTGTGGAAGTGATATCAACCGGTTGAGATTAAGGTTTATTCTTTTTTTTTTGGTGGCATATTTCCATTTGATCAGGTGCTTAGAGGATATTTTTAATTTGATCATATATCAGTTTAAAAAATAAGGATATGCATGCGATTTATAAATTCCTATTTTTACAGAAAACCCTTGAATTATTAACGGAATGAGATCGGCTCAAGTGAAATTGAATGGATATAAAGGATTCATATAGCACCCAAGGGTGTGGCTAAGTGGTCAGTGAATTGGGCTGAGAACCATGAGGTTCAAATCCCAACAGACACAAAAAAAAGAACTAGGTGATTTCTTTCCCTCTACTCTAGTCTTGGTGGACAAAGTTGCTTGATACTTGTTGCTGGTGGGGGGTGGCAAGGTCGAGGTGTGTGCAAGCTGGCTAAGACACCATGATTATCAAAATAAATAAATAAAGAATTCATATAGCCTAAGTAGGATATTTCTTCCCATGAGGTCTCAGGTTTCAATTTGAGGCAAAAATTGCTAAGTGATTTTTTCCCATCTGCTTGAGCCTTGGCAGGTAAGCAGGTACCGATGTAATAGTCTTTTCCCATCTGCTTGAGCTTTGAGGTGTAATTATTAGAAAGCACCACCATAATTGCAAGTTGTAGATACTTCCACGGGAGATATATTAGGATTGACTGTAATCAGATAGTTTGTGGCCCTATTCGTCCAAGTTAACCACCCATACACTGAATTTTAGGGAGTCCAACATGCATATATGTATGCGGACCAAGACAGACACAGAGACGAATCTACATGTCTACATCTAACAGTGAAGTCTCCTCATCCTTCTGATTTCGGATCCACATGATTTGCAGCTTATTAAAATTAAACTTATCAAGAATGCCACTTTGCATTTTGTCTCTAAAAAAGAATCCTACTTTGCATGGTCTCTAAAAAAGAATCCTACTTTGCAATCTGAAGAAAAGTAGTCTGCCATCGTTTGAGTGTTAAAAGCCCACTGCCTTCATACTTGCCATATAAAAATAGAGTCCAGTGACTACCACTGACACATTTGTGGTTTCTGACTGTTATTGTTGTTAAACTCAAGTAGGACTGGGATGTATGATTCAATTTTTATGCTGTTATGTTGACAGCCAATTGGAACTTCCTTACATTGACCAACTATGCCGCAGTTAATGTTTCTGTTGTGTTATAAGTGTGATTATTATTATATTTCCTTGTGTTTCGCCAAGTTCTTATGGTGTAATAGGAGAGTTTGTATTAATTATTATTATGCATGGACTTGTACTTTGCACTAAATAATTTTTAATATTGAATATTTTGATCTTTTCTACTATCAAGCAAAAAAGAGAGTACTTGTTGTAGAGCCAGACAGAATAAATGATCAAAGTAATATGATTTTGCTTTCCTTTTCCTTTCTTTTTTGTGCAACAAAAAATAGATGATATCGAAGTTATTACTAATTCTTTTTTATTTATTCCCACTTGTTTCTGCTACCCGCATCGGGGTCCCGACTAATCCATTGCCGCATAAGGCCTGGGTGGGTTGGGGGGGTGAGGGGAGTGCTCCCTACCGTGCCATACCCAGGGCTCGAACCCGAGACCCCTGGTTTAGGATGGAGGGATTCTATCCATCCCACCATAACCCTACTCCTTGGTGATAAAGCTGTAACTGTACTTTTGGTTGTACTTCTTTCACAACATTCCATCTAAAGCTTCAAACTATATGAATAATGCCTCTATTGCCTCTTTTACTTGCCCTCCCCAAAAAAGTCAGTTTCACACTTATTTTATATATGGCCTGAAGTGTTAGTTTCATGGGACGTGTTTAATGTATCCTAATTAAATTTTGCAGCCTCATCGTTATAAAGTTACTACTCTCTCAGTTTCTATAGTTTTGATCCTATTTTACTGAGCGCGGAGTTGACAAATGAAGAGACTTCTAAAATTGTGGTCTTATGTAAACCGCGATTATAAGACCTTTGAAACTTGTGGTTTTAAACGTGCCATGACAGTTGTGTAGCTGTAAAAGCTTGTCATTAAGGGTAAAGTGTGAAGTGTAAGTTACCTTCTCAAAAAAAGGAGGAAACTTTTAAGTTAAATAATCTCCAAATTTAGGAAGGAGCCAGGAAATAGAGTCCATCACAACTGAAACGAATGGAGAATATGTATTGGCTAGAGGTATTCATGTTGCCAAATAGTTATGGATGGTATGTTAAGAGTTAAATGTGCATGTCTATGAAAGGGATGAGTAAATTACAGATCTGGTGGACAGATTTGCAGAAGCTGCACAAAAAAAATAAAAAATAAATAAAAAAATAAGAGCCTTGCTATTACTAAGCTGCCTGTTTGCCTTTTCTTGCATTGAAGGTTTATTGAATTAATAACAAACCTTTGGGTTGAGTGGAGGCTTTCTAAAACTTAATGTGGGGTTTATCATTAGATTTTTTGACCTAAGACGACAGTGATGTTTAACTGATATTTGGCACTAAGCATTCAATTTGATGGGAAAATCAGTTGAATACAAAATAATTGTTAAATTTATATTCTAGCTTTAGTTCCATTTTAGTTTGTCCTTACTCCTTCCATTCCAGTTTATATGACGCTCTTTCCATTTTGGTGCATACCAAAATGTTTGACACCATTCTGTTTTATACAACTTTCAATAACTTTAAGGATTCATTGAACTACTCAGACTTCAACTTCGATGTGATGTTTGCTTGTTTTTTCAACCTCCACTTTAATATTCTCTTCCATTATCAATAATACATTAAATAAGTCAGATTACATATTTCAACTCCGTGCTGAATCAATCACCCTTACATAAAATGAAATGGGTGGAGTAGTCATTTCATAGAGTGATATTCTTCCTTTTTCAAGTTTAAAGAGAAACAAACACATGGGAGATTTCCATGCCTTAGAAAACATGAAAGCTGACAGCTAATGATACTTCACCATATGAAGAATTTTGAACAAACTGTTGAGAAAAGAAATTTTAAGAGAGTTCCAGATGTCTTGGTGTGCTTTATTCAACTGGCTTTGTAAGTTGGAAATCAGAATTTAATGTATTTACTCCTGAACAATGCTTCTTTTTGCTAATCAAATGACTAGTATTGGAATATTGAGTTCATTTCTTCTTCTTTTTGGTGCTTGAATATGTTTTGGAGGAATATGATATGCAAGGTTCATTCTCCAAATTTGATCCTAATATCTGGTGCATTTCATGTTTGAATTAAATAGAAAAAGATTGTGTTTATGTGGGATTGGGGGGAGGGAGTGCTGGGAACAAAAGAAAAGATAGCTGTTAATTATGAAGATTTGAAGTAATCGGGATAATAGATGGAGTGTAAGTTCATCCCTTATTTTCTGCTCTTTTCAGGTCAAATTGGATGGCAGTGTCTGCATGAAACACAGACTTTTGGGTCACGAGACATATGTCTCGTATATATCATGGAGTCCTGATGACCATCAGCTTCTCACTTGTGGTGAAGAGGAAGCTGTCATTCGGTGGGATGTCGAGTCTGGTGTACGTATACACACTTATGAGAAAAAATTTGTTAAGTTTATCTCATGCGGCTGGGCTCCTGATGGAAAAAGGATATTCTGTGGTGTAACTGACAAAAGCATTAGCATGTGGGATTTGGAAGGGAAAGAGCTTGAGTGTTGGAAAGGCCACAGGGCTACTAGAATATCGGACTTGGGGATAACAAGTGATGGGAAGCATGTTATCTCTGTTTGTAAAGAAAATATGATAGTATTAGTTGGATGGGAATCAAAAGTAGAGAGAGTAATTCAGGAGGATCAGGCAATAACCTCATTTGTATTGTCCATGGACAGTAAGTATGTGTTGGTTAGTCTTTCAAACCAAGAAATTCATCTCTGGAATATCGAGGGAACTGTAAAACTTGTAGCCAAAT-ATAAGGGG</genome_strand>
        <mrna_strand>TATGGTTCCAGAAAAGAGATTGGTACATCTTGTTGAACAAGCTCTTGACTTGCAACTAGATGCTTGTAGATTTCACAACTCTGTGGTTGGTGAAATGTCACTGCTCAGTGATCATCACTGCGGAAGAGATCATATTCCATCTCTAACAATGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTACATGAACATAAAGATGAAGTCTGGTTCTTGCAGTTTTCCCATAATGGAAAGTACTTAGCCTCGTCATCTGCCGATTTTGCCGTAATTATATGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATTGGATGGCAGTGTCTGCATGAAACACAGACTTTTGGGTCACGAGACATATGTCTCGTATATATCATGGAGTCCTGATGACCATCAGCTTCTCACTTGTGGTGAAGAGGAAGCTGTCATTCGGTGGGATGTCGAGTCTGGTGTACGTATACACACTTATGAGAAAAAATTTGTTAAGTTTATCTCATGCGGCTGGGCTCCTGATGGAAAAAGGATATTCTGTGGTGTAACTGACAAAAGCATTAGCATGTGGGATTTGGAAGGGAAAGAGCTTGAGTGTTGGAAAGGCCACAGGGCTACTAGAATATCGGACTTGGGGATAACAAGTGATGGGAAGCATGTTATCTCTGTTTGTAAAGAAAATATGATAGTATTAGTTGGATGGGAATCAAAAGTAGAGAGAGTAATTCAGGAGGATCAGGCAATAACCTCATTTGTATTGTCCATGGACAGTAAGTATGTGTTGGTTAGTCTTTCCAACCAAGAAATTCATCTCTGGAATATCGAGGGAACTGGTAAACTTGTAGCCAAATAATAAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E330510" ref_strand="+" ref_description="SGN-E330510 [cTOD-4-N4]">
      <seq>ttttgaattgttgcacaaggaaaaagttatggatgctctgaggacactgaggggcgagatctcacctctttgcataaacaatgatagagtccatcagctttcgtttttcattatatcaccttctcagcaggttcttactggggtatcaggtcaaggcacagcgagagtaaagtcacgtacagagctactagaggaattgcaaagattgcttcccccaacagttatggttccagaaaagagattggtacatcttgttgaacaagctcttgacttgcaactagatgcttgtagatttcacaactctgtggttggtgaaatgtcactgctcagtgatcatcactgcggaagagatcatattccatctctaacaatgcagatattacatgaacataaagatgaagtctggttcttgcagttttcccataatggaaagtacttagcctcgtcatctgccgattttgccgtaattatatgggaggtcaaattggatggcagtgtctgcatgaaacacagacttttgggtcacgagacatatgtctcgtatatatcatggagtcctgatgaccatcagcttctcacttgtggtgaagaggaagctgtcattcggtgggatgtcgagtctggtgtacgtatacacacttatgagaaaaaatttgttaagtttatctcatgcggctgggctcctgatggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="39266" stop="30386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38966" g_stop="38591" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38590" i_stop="34657" i_length="3934">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.713" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34656" g_stop="34555" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="478" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34554" i_stop="30901" i_length="3654">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30900" g_stop="30686" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="693" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E330510" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38966" e_stop="38591"/>
          <exon e_start="34656" e_stop="34555"/>
          <exon e_start="30900" e_stop="30686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAATTGTTGCACAAGGAAAAAGTTATGGATGCTCTGAGGACACTGAGGGGCGAGATCTCACCTCTTTGCATAAACAATGATAGAGTCCATCAGCTTTCGTTTTTCATTATATCACCTTCTCAGCAGGTTCTTACTGGGGTATCAGGTCAAGGCACAGCGAGAGTAAAGTCACGTACAGAGCTACTAGAGGAATTGCAAAGATTGCTTCCCCCAACAGTTATGGTTCCAGAAAAGAGATTGGTACATCTTGTTGAACAAGCTCTTGACTTGCAACTAGATGCTTGTAGATTTCACAACTCTGTGGTTGGTGAAATGTCACTGCTCAGTGATCATCACTGCGGAAGAGATCATATTCCATCTCTAACAATGCAGGTTAATTCACATTAATAATTGGGTGTGCTTTTGATATACAAGCCTTTTGATTCTGCTCTTGATTGTTCGAGTCTGACATGTTCAAGAGAAACTTCATTTTGTGTCTCACACAACAGACACAGGTTGTGTGAGGCTTTGATCTACAAATTACTGGACCCTAGTCTTACACTTTTGGTCCACAAATTTGTGAAACAAAAAGAATCCCCACACAACTTGTGTCAGTTGTGTGAGACACAAAGTAAACTCTTTCCATGTTTCGTCTTGCAATCATGCACTAGTTTGTCCTATCATTATCCGAGTCAATAATTAGTGGAGTTGAATGAATATGATGGGAAATATTGATCAAGTTTTGTTCCTTTGCATTCTAAACAAATGTCATTGTTGTTAAAAGAGTCACCTCTTCTATTTTATGTCAATTATTTGAATGACATATGTTGGCATTAGGATGAAAAGCATTCTGAATTCATGCTTTGTTTCATTCAACTCTTTGTGGTTGAAGGTTTTGCCAATTTTTGCTTATGTTCTTTTGAAAGGCTTGTTTTGATTTGCACCCAAGGGTGTGACCTAGTGGTCATTGACTGGAGACAAAAAACACTAAGTTCCCATCTGTCCTAGACAAAAAACAAAGCATGAAATCATTTTCTTTGTTATGTATTTGTCATTCATGCTTATATTTATTAGTCTTGGATTGATATTTGTACTTTTTCTCCCTTCGTGCCCTTTTTCATTAAAGCCCACACTTCTTTTTGACAAAGGTAACAAATTTGTATATAGTTTTTCAGCACTAAAGACTGGGATCCCAAATTTAGACCGTGGAGCTACATACAGTTGATAGACTCAAAAAATCTTTAAAAACACTAGATTCTACTTCATCTTACAAAGAACCTAGAATACTGGAATAGTTACATGATCATTTACATACTCAGACTACACCAATAGCAAAAAGTGACAAGACAGCTCATTTTTATCCTATGTAAAGGCCCACTAATGCTCTCAAATTTCTCTCCTTCCATATGGTCCACCAAATCACTGTTGGGACAATTCTCCATCAGCTTTTGTCTGCACCGCCACTACCTTTATTGTTCCAACTTTCTATAGCCCGTCTTGCCCTTTATGGTATGGTCCTACTTATGCCCCTAAAGCTGGTAAATAGGTTCCAAAGTTGTCTAACCACCCTGCAGTGAAGAAACAAATGGTTGATTGTCTCTACCTGCTTCTCACAGAAACTGTCTTGGAGACATATGTATTCCCCTCTTCTTGTGATTCTCCTGAGTTAGTTTTGTCTCTTTTACTACCAACCAAGTAAAGATTGCCTCCCTATATGGAATTTTGACTTTCTAGATAAGCTTCCAAGGCAAAAATTTGAGTTGAGTCCCTATCTGGTTCAGATTCTTGTAGGCAGAGCTAACTGTGAAAATACCTTTGCTATGATACATGAGTGTCTTCTCCCTCTTGCAATCCTCCAAATTGGTCTAGGGTGCCACAAAATTTAGCTAATCTATCCATATCCCAGTCTTGCATCATCGTTCTCTATGTTAAGTTCCATCCATGGATGGATCAAACTCCTTCAAAATGGCCTGTTGTTGCTGATTCAACAGATAAATATCTGAAAAAGTAAGAACTGCTTGAGGCTGCCATTTCCTAACCAGCTAATCCTAAACAAAATCTTCCTTCCATTGTTTATACTGGTCTCTGGGAACGTATATTGCACATTTGTCCCTTATTATTATTATTAATATTGTTAAAGCAGAAAGCTAATCAGTACACATTAACCCATGTACAAAATAATTCATAAAATATATACGAGTCAGACATCAGCAAATAATGAAGATACACAAAAATAGTATAAAAAAAGGAAGAAGATTAAGATAAGGTAAAAAGTTAACCTATGATATTGCTGATTGTAGTATGGCAAGTGGAAAAAAATAAAGAAAGTGAAATGTGATACAAAGGAAACAAATTGATATGTGCACGTACTGAGGAATATAAAAAGACAGCAACAATATCTTTACCAATGTAGAAGAGGAAAGAACAAAAGATGAAACGAACTTCTATTTCATATACATAACTTCCATGTCTTTCATATTCATAACCTTCAAATATTTAATGTGTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGATGATGGTGATGATGATGATGATGATTGTATATAGTTCTTTCAATGAAACTTTGCCACAAAATTCTGATTGATCTCCACAGGTTCATACCATAGGGAGAAATTACTTCCTTAGTTGTCTAGTACTCTAATTTTCTCATACTTGGTCTGAATTACTCTTTAACCCATTTAGCCTGCTCCTCTTTAGGAGATCTCCACAACCACTTCATTATTAAGCTTTTGTTCTATTTCCTCAAGTTTATAATGCCTAACCCATCTAGTTTCTTTGAAAGAACTACAGTCTTCCATTTGACCTAATGAAATCCTTTGTTCTCCTTCTTACCATTCCACAAAAACTCCTCCTTAAAGCATCAATTCTTTCTTCTACCCTAGTTGGGAGAGGAAAAAATGACATCTAGTACGTCGGTAGAACATCTAAGACTGAGTGATCAGGAACAATCTTCCACCTCAGACAGATACTATGCTTTCCATCTGGATAGTCTTCTTTCACATCTCTTCACCACCCCATTCAAAATCTCTCTGGATTTGCTTTTGGCTCCCAAAGGCATCCCCAAATAAATTGTTGGTAGTTGACCTATTTCTCCTCCCAAGATCTCTGGCAGATTTACATTCTGTTCACATCATTAATTGGAAAAATATGACCTCCGATTGATATGGAGCCCAATAGTTGCTCTGATTAATCTCCTGGACACACCCAAACAATTCTTACCATTATGCTCCCTCTCAAAAAGAATTTTTTATTAATAATGCAACAAGCTAGTGTCTTCATGGCTCCACAGAAAAAGAAACTATGCAAATTGCTTCAATGTATCTATATGTCACAAGTACATATATAAACTCTCTAGAAGAATAGAATCTTATGTAATATTTTGTTCAGCAAAAAACAAATGAAGAACAGAGATTTGACTCTCCAGCTTTAATGCCGTGGATCTTCAAAGTGCCAGCTCCTTTTGAGTAGTTATTGACAGCGGAACTCTAACTAAAAGCATATTTATTGCAGCCTCGGTCCATGAGCAAATTAATATGGGGAATGCATGCTGTCCTATCATAAGCTTGCTAATGAATGCAGTTTTTATTTACTAATTTGAAAAAAATGAATGCACTTTTATTTTTATGTCCTAGAAAGATGCTGGAGTTAATAGGTAAGCACTATTGATTTCTGGGGAGCTTTGTGATCTTCAGGTCCTTAGTGAGCTTGTGTCCACCATTTCATGTGGCTTTAGTCACAACAATATGAAATGTTTCATGGATTGTTGCCAAACTTTTGAATCAATGAAAGTCAGTACCTGTAGGCACAACATCACATTTTTCGTCTCTTGTGAAATTGGTCTCCCTTTCTCTTGTCATTATATCTTTTTTGTGTAAACAAGTATGTTCTTTTTTTCCTCTAAATTTTGGCTTTGTTTGGGACTGGGGTGTAACTTTTGTTTTGTTCATGTTGTTTATGCCATTTCAAATTGATCTTATATTTGGGAGGTTTAAAGTTTACCAGGAGATGTGGTTGGATCCACTGTGGTTTAAGTGAAAGCAGAAGAAATTGCCTTGGGGTGGGGTGGAGGGGTTAGTTAAAGTGCCAAGGAGTTGTAAATGTGCTTTGATAAAATTGAACTTCACTGGCTTTCTGCTTGTTATCATTTACCGACGAGCTGTTATTTTATAAGTCGTTTTAGAGCAATCTTTGACAGTGGAGTCTGATTTCTTGCAGATACAATATGTTAATCACCTTAAACGCTAATTGTTTCTTCATTGCTTCTACTGCACCAGATATTACATGAACATAAAGATGAAGTCTGGTTCTTGCAGTTTTCCCATAATGGAAAGTACTTAGCCTCGTCATCTGCCGATTTTGCCGTAATTATATGGGAGGTATTTTAAGTTCTCTTTATTTTGTTGTCATATCAGTAGTTGTTTTTCAACTTAGATCAATTGCTACTTTTACTTTTTATCGAATATCTTTTCCTTCATTCTTGCATCTTAGTCACAGCTACCTCCATACTTGATAGGGTCTTCTACTTCTGATTTGAAGGATTAGTAACTTGTGTGCTTCACAGTCTCATGGAGTGCCTCATATGGGTGCTCAAATTTCTGTGGTTTCCGCGACCTCGTGTAGTAATATATTTGAACACAAGGACAGCAAATTATCTGTGGAAGTGATATCAACCGGTTGAGATTAAGGTTTATTCTTTTTTTTTTGGTGGCATATTTCCATTTGATCAGGTGCTTAGAGGATATTTTTAATTTGATCATATATCAGTTTAAAAAATAAGGATATGCATGCGATTTATAAATTCCTATTTTTACAGAAAACCCTTGAATTATTAACGGAATGAGATCGGCTCAAGTGAAATTGAATGGATATAAAGGATTCATATAGCACCCAAGGGTGTGGCTAAGTGGTCAGTGAATTGGGCTGAGAACCATGAGGTTCAAATCCCAACAGACACAAAAAAAAGAACTAGGTGATTTCTTTCCCTCTACTCTAGTCTTGGTGGACAAAGTTGCTTGATACTTGTTGCTGGTGGGGGGTGGCAAGGTCGAGGTGTGTGCAAGCTGGCTAAGACACCATGATTATCAAAATAAATAAATAAAGAATTCATATAGCCTAAGTAGGATATTTCTTCCCATGAGGTCTCAGGTTTCAATTTGAGGCAAAAATTGCTAAGTGATTTTTTCCCATCTGCTTGAGCCTTGGCAGGTAAGCAGGTACCGATGTAATAGTCTTTTCCCATCTGCTTGAGCTTTGAGGTGTAATTATTAGAAAGCACCACCATAATTGCAAGTTGTAGATACTTCCACGGGAGATATATTAGGATTGACTGTAATCAGATAGTTTGTGGCCCTATTCGTCCAAGTTAACCACCCATACACTGAATTTTAGGGAGTCCAACATGCATATATGTATGCGGACCAAGACAGACACAGAGACGAATCTACATGTCTACATCTAACAGTGAAGTCTCCTCATCCTTCTGATTTCGGATCCACATGATTTGCAGCTTATTAAAATTAAACTTATCAAGAATGCCACTTTGCATTTTGTCTCTAAAAAAGAATCCTACTTTGCATGGTCTCTAAAAAAGAATCCTACTTTGCAATCTGAAGAAAAGTAGTCTGCCATCGTTTGAGTGTTAAAAGCCCACTGCCTTCATACTTGCCATATAAAAATAGAGTCCAGTGACTACCACTGACACATTTGTGGTTTCTGACTGTTATTGTTGTTAAACTCAAGTAGGACTGGGATGTATGATTCAATTTTTATGCTGTTATGTTGACAGCCAATTGGAACTTCCTTACATTGACCAACTATGCCGCAGTTAATGTTTCTGTTGTGTTATAAGTGTGATTATTATTATATTTCCTTGTGTTTCGCCAAGTTCTTATGGTGTAATAGGAGAGTTTGTATTAATTATTATTATGCATGGACTTGTACTTTGCACTAAATAATTTTTAATATTGAATATTTTGATCTTTTCTACTATCAAGCAAAAAAGAGAGTACTTGTTGTAGAGCCAGACAGAATAAATGATCAAAGTAATATGATTTTGCTTTCCTTTTCCTTTCTTTTTTGTGCAACAAAAAATAGATGATATCGAAGTTATTACTAATTCTTTTTTATTTATTCCCACTTGTTTCTGCTACCCGCATCGGGGTCCCGACTAATCCATTGCCGCATAAGGCCTGGGTGGGTTGGGGGGGTGAGGGGAGTGCTCCCTACCGTGCCATACCCAGGGCTCGAACCCGAGACCCCTGGTTTAGGATGGAGGGATTCTATCCATCCCACCATAACCCTACTCCTTGGTGATAAAGCTGTAACTGTACTTTTGGTTGTACTTCTTTCACAACATTCCATCTAAAGCTTCAAACTATATGAATAATGCCTCTATTGCCTCTTTTACTTGCCCTCCCCAAAAAAGTCAGTTTCACACTTATTTTATATATGGCCTGAAGTGTTAGTTTCATGGGACGTGTTTAATGTATCCTAATTAAATTTTGCAGCCTCATCGTTATAAAGTTACTACTCTCTCAGTTTCTATAGTTTTGATCCTATTTTACTGAGCGCGGAGTTGACAAATGAAGAGACTTCTAAAATTGTGGTCTTATGTAAACCGCGATTATAAGACCTTTGAAACTTGTGGTTTTAAACGTGCCATGACAGTTGTGTAGCTGTAAAAGCTTGTCATTAAGGGTAAAGTGTGAAGTGTAAGTTACCTTCTCAAAAAAAGGAGGAAACTTTTAAGTTAAATAATCTCCAAATTTAGGAAGGAGCCAGGAAATAGAGTCCATCACAACTGAAACGAATGGAGAATATGTATTGGCTAGAGGTATTCATGTTGCCAAATAGTTATGGATGGTATGTTAAGAGTTAAATGTGCATGTCTATGAAAGGGATGAGTAAATTACAGATCTGGTGGACAGATTTGCAGAAGCTGCACAAAAAAAATAAAAAATAAATAAAAAAATAAGAGCCTTGCTATTACTAAGCTGCCTGTTTGCCTTTTCTTGCATTGAAGGTTTATTGAATTAATAACAAACCTTTGGGTTGAGTGGAGGCTTTCTAAAACTTAATGTGGGGTTTATCATTAGATTTTTTGACCTAAGACGACAGTGATGTTTAACTGATATTTGGCACTAAGCATTCAATTTGATGGGAAAATCAGTTGAATACAAAATAATTGTTAAATTTATATTCTAGCTTTAGTTCCATTTTAGTTTGTCCTTACTCCTTCCATTCCAGTTTATATGACGCTCTTTCCATTTTGGTGCATACCAAAATGTTTGACACCATTCTGTTTTATACAACTTTCAATAACTTTAAGGATTCATTGAACTACTCAGACTTCAACTTCGATGTGATGTTTGCTTGTTTTTTCAACCTCCACTTTAATATTCTCTTCCATTATCAATAATACATTAAATAAGTCAGATTACATATTTCAACTCCGTGCTGAATCAATCACCCTTACATAAAATGAAATGGGTGGAGTAGTCATTTCATAGAGTGATATTCTTCCTTTTTCAAGTTTAAAGAGAAACAAACACATGGGAGATTTCCATGCCTTAGAAAACATGAAAGCTGACAGCTAATGATACTTCACCATATGAAGAATTTTGAACAAACTGTTGAGAAAAGAAATTTTAAGAGAGTTCCAGATGTCTTGGTGTGCTTTATTCAACTGGCTTTGTAAGTTGGAAATCAGAATTTAATGTATTTACTCCTGAACAATGCTTCTTTTTGCTAATCAAATGACTAGTATTGGAATATTGAGTTCATTTCTTCTTCTTTTTGGTGCTTGAATATGTTTTGGAGGAATATGATATGCAAGGTTCATTCTCCAAATTTGATCCTAATATCTGGTGCATTTCATGTTTGAATTAAATAGAAAAAGATTGTGTTTATGTGGGATTGGGGGGAGGGAGTGCTGGGAACAAAAGAAAAGATAGCTGTTAATTATGAAGATTTGAAGTAATCGGGATAATAGATGGAGTGTAAGTTCATCCCTTATTTTCTGCTCTTTTCAGGTCAAATTGGATGGCAGTGTCTGCATGAAACACAGACTTTTGGGTCACGAGACATATGTCTCGTATATATCATGGAGTCCTGATGACCATCAGCTTCTCACTTGTGGTGAAGAGGAAGCTGTCATTCGGTGGGATGTCGAGTCTGGTGTACGTATACACACTTATGAGAAAAAATTTGTTAAGTTTATCTCATGCGGCTGGGCTCCTGATGGAAA</genome_strand>
        <mrna_strand>TTTTGAATTGTTGCACAAGGAAAAAGTTATGGATGCTCTGAGGACACTGAGGGGCGAGATCTCACCTCTTTGCATAAACAATGATAGAGTCCATCAGCTTTCGTTTTTCATTATATCACCTTCTCAGCAGGTTCTTACTGGGGTATCAGGTCAAGGCACAGCGAGAGTAAAGTCACGTACAGAGCTACTAGAGGAATTGCAAAGATTGCTTCCCCCAACAGTTATGGTTCCAGAAAAGAGATTGGTACATCTTGTTGAACAAGCTCTTGACTTGCAACTAGATGCTTGTAGATTTCACAACTCTGTGGTTGGTGAAATGTCACTGCTCAGTGATCATCACTGCGGAAGAGATCATATTCCATCTCTAACAATGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTACATGAACATAAAGATGAAGTCTGGTTCTTGCAGTTTTCCCATAATGGAAAGTACTTAGCCTCGTCATCTGCCGATTTTGCCGTAATTATATGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATTGGATGGCAGTGTCTGCATGAAACACAGACTTTTGGGTCACGAGACATATGTCTCGTATATATCATGGAGTCCTGATGACCATCAGCTTCTCACTTGTGGTGAAGAGGAAGCTGTCATTCGGTGGGATGTCGAGTCTGGTGTACGTATACACACTTATGAGAAAAAATTTGTTAAGTTTATCTCATGCGGCTGGGCTCCTGATGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E700867" ref_strand="+" ref_description="SGN-E700867 [FA14BE10]">
      <seq>aactctttcctccatttctctattcacaagttctccattaacacaaatactcaaatctctctacaggattcttactctcaacaatcaatcatataccttttttagctttcaatcgactgcttgtttacccacctaatctactagtcttagcttaccgacaaacgaaagggaataaaagaatacaatttgggataaaaccatttgcgatttgctggtttttcaatcagtgatttaggcctactattccaacttttcagttttgtcttcctcctgctgttatatatgggctgacgtgtttgtttcatgggagctgaggacgatgatgaaccaccatcaaaacgtgtgaaggtatcctccagtcaattggtagatatttctgacaggacatttgttagagatcctgcaagttgttcattgggtgacgcgatggctcgacccctgactcttcaaggggacgatgaggttgttggtacaaaaggagttgtcaagaaagttgaatttgttcggattataactgaggcattagattctcttggttacaaaaagactcgggccttactagaggaagagtcagggatacccttgcacacttccgtcgtaaatttgtttatgcagcaaattcttgatggtaaatgggatgaaagtttaaacacattgcgagagattggtctggtggatgaaaaaattgtanagttggcatcttttgtgatattggagcagaagttttttgaattgttgcacgaggaaaaagttatggatgctctgaggacactgaggggcgagatctcacctctttgcataaacaatgatagagtccatcagctttcgtttttcattatatcaccttctcagcaggttcttactggggtatcaggtcaaggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="41931" stop="38508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41631" g_stop="41404" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41403" i_stop="39464" i_length="1940">
            <donor d_prob="0.016" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39463" g_stop="38808" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="884" r_length="656" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E700867" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41631" e_stop="41404"/>
          <exon e_start="39463" e_stop="38808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTTCCTCCCATTTCTCTATTCACAAGTTCTCCATT-ACACAAATACTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGTGTATGTATCCATTTTGATCTGAATCTTCAAATTGCTTTATGGGTATTGCAGATTCTTTTCTAATCTTTTGTTGATTTTCTGGTAATCTTTCTTTTCTTTGCTTGTCTCTTACGGAAATGTTTTCTGGGTTTGGTTTGATTCTTGTTCTTGATTTTGTTTGTTGGATTTGTTGAATGGTGTTAATGGATTATCTAAAGTTTGATTTTTTTCTAGTTGGGTTTTGAGTGGTTATTGTAGTATATGCTTGTTTTACAAAAGAGAATGGTTTGCAGAAGTTAAGTTTAGCCTATTTACAACTTAAGTACTAATTAGACGGCAAATGCATTTTGAGTTGAATTACCTTTTGCAGAAGTTTACTTAACAGCAGATACATTTACTAACTTAGTTTGTTATTGGATGCTTTTAGTACCGATTGGATCTTTTCATCAAGATCCCTAGTTTGTGCTGTTGGTGAGAGGTATGGTTTAGATTTGCTGTAAATGTGATTGCATTGGAGTGAAATTATCCTTAATTAGTTCATCTTTGATCATAACAAGTTTAAGAGGCTTAAGACTCATCACTATCTTGTGCTATATGTGTATCTTACTATCATACTTGATCATAATAGGTTTGAGGGGGTTCAGTGGGTGCGTGCTACATCATATTTTGCTAGGGGAGGATTGACTTTGTTTCCAGGGTCGTGATATGATCGATCCATGATCCTGTAGAGAAATAGGGTAAACCTTGTTTGTTATTTGGAAAGTGTGATTAACTTGTGTAGTCAGCTCTTGCAAATGTTTGCAACTAACGAGTGAAATTCTGTTGATTGCTTCAGCTTTATTGTGGCCCAATTTATGGCCTTCAGTCATATTCACATATTAGTAAGAAGATTAGATTCTTCTCATTAGTGGCCAGGCTATTTTGGATGAACTATTATGTCGATAGTGGTAACATTGATGTGTTTTCTTTTCTATTGAATTTCGAATATCAAAGATCAGACATATCTTAGAGTTGAATTTATGGATTCATTTACAGTAATTACGTAGCTTGAGTGTTGATTAATGTTGAACTTGCGTGTTACCGTGCACACTGGTAAAACATTTGCATTTTGTGTGATCTCCTTCTGGCAGGAATTGAAACTTCTCTGTCTGCATCAGTTCTCTTATTTGGGAGGATTATTATTAGCGGGTAATGCTGTTTGATCAGGAGGCTGGTATTGAGAAGACCGAATAGGTTATTCAAAGAAAATGGTAGCTAATGCTCCTTCGATGTTAATGTGGACTTAGCGAGAGCAATGTACTAGGCAGGCTGTTCAATGGTTCGATAACTAGTAGTATTAATTTGTGATGTCTATTTAGGTCGTATGTTCATTAAGCTTTTTAAATTCAGGCTGACACCGTCCTACCCTTCCTACCTCTCCTTTCTTGAATAATTGTTAAAAAGGAAGTTTTGGTGGAGCCCTTTATGTATAGAGTTTCAACTTAAGCAAGCAAAACCGATTTGTAGCATAAGAAATTATTGGTGTCTGGCATCAGGTCCAAAATTACTGGTTGCACTTCGTGATGGTATTTTATCTGGTAATTCTGAATAATCTGTCTGAGGTGTTGCTGTATTTGTTGCGAATCTGTCCAAGCAATTTTACTTTCATATATATTATTGGGTACTTCAGCATGTGATATTAGTATCAGGCGATGCTCTTGCTAAATGCTGGACAATTTTCATCAATAAAATGATTACGTATAAAAGAAGATTAGCCTATACTTTTGTTATTTGCAGTTTTTTTCCTTAAACTCTCTGTTTTGCTCATTGTCTCATTACTATCGTTCTCACTTTCTAATCGTAGATCATTGAAAGTGGATCCTGCAGATTACCTTCTTTCTCTTTTTTCTGTTTCTATTTTTATTAGTTTTATGTTATTTCCTTTTCTGCTGTTACTTAGAGTCTCCATTTATTAATTGCAGGATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATGAGGTTGTTGGTACAAAAGGAGTTGTCAAGAAAGTTGAATTTGTTCGGATTATAACTGAGGCATTAGATTCTCTTGGTTACAAAAAGACTCGGGCCTTACTAGAGGAAGAGTCAGGGATACCCTTGCACACTTCCGTCGTAAATTTGTTTATGCAGCAAATTCTTGATGGTAAATGGGATGAAAGTTTAAACACATTGCGAAATATTGGTCTGGTGGATGAAAAAATTGTAAAGTTGGCATCTTTTGTGATATTGGAGCAGAAGTTTTTTGAATTGTTGCACAAGGAAAAAGTTATGGATGCTCTGAGGACACTGAGGGGCGAGATCTCACCTCTTTGCATAAACAATGATAGAGTCCATCAGCTTTCGTTTTTCATTATATCACCTTCTCAGCAGGTTCTTACTGGGGTATCAGGTCAAGGCAC</genome_strand>
        <mrna_strand>AACTCTTTCCT-CCATTTCTCTATTCACAAGTTCTCCATTAACACAAATACTCAAATCTCTCTACAGGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAAAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGTGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGCAAGTTGTTCATTGGGTGACGCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATGAGGTTGTTGGTACAAAAGGAGTTGTCAAGAAAGTTGAATTTGTTCGGATTATAACTGAGGCATTAGATTCTCTTGGTTACAAAAAGACTCGGGCCTTACTAGAGGAAGAGTCAGGGATACCCTTGCACACTTCCGTCGTAAATTTGTTTATGCAGCAAATTCTTGATGGTAAATGGGATGAAAGTTTAAACACATTGCGAGAGATTGGTCTGGTGGATGAAAAAATTGTANAGTTGGCATCTTTTGTGATATTGGAGCAGAAGTTTTTTGAATTGTTGCACGAGGAAAAAGTTATGGATGCTCTGAGGACACTGAGGGGCGAGATCTCACCTCTTTGCATAAACAATGATAGAGTCCATCAGCTTTCGTTTTTCATTATATCACCTTCTCAGCAGGTTCTTACTGGGGTATCAGGTCAAGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E689396" ref_strand="+" ref_description="SGN-E689396 [t3_tus_84_I17]">
      <seq>gccaaacaactctttcctccatttctctattcacaagttctccattaacacaaatactcaaatctctctacaagattcttactctcaacaatcaatcatataccttttttagctttcaatcgactgcttgtttacccacctaatctactagtcttagcttaccgacaaacgagagggaataaaagaatacaatttgggataaaaccatttgcgatttgctggtttttcaatcagtgatttaggcctactattccaacttttcagttttgtcttcctcctgctgttatatatgggctgacgcgtttgtttcatgggagctgaggacgatgatgaaccaccatcaaaacgtgtgaaggtatcctccagtcaattggtagatatttctgacaggacatttgttagagatcctgtaagttgttcattgggtgactcgatggctcgacccctgactcttcaaggggacgatgaggttgttggtacaaaaggagttgtcaagaaagttgaatttgttcggattataactgaggcattagattctcttggttacaaaaagactcgggccttactagaggaagagtcagggatacccttgcacacttccgtcgtaaatttgtttatgcagcaaattcttgatggtaaatgggatgaaagtttaaacacattgcgaaatattggtctggtggatgaaaaaattgtaaagttggcattcttttgtgatattggagcagaagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="41936" stop="38665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41638" g_stop="41404" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41403" i_stop="39464" i_length="1940">
            <donor d_prob="0.016" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39463" g_stop="38965" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="735" r_length="500" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E689396" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41638" e_stop="41404"/>
          <exon e_start="39463" e_stop="38965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAACAACTCTTTCCTCCCATTTCTCTATTCACAAGTTCTCCATT-ACACAAATACTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGTGTATGTATCCATTTTGATCTGAATCTTCAAATTGCTTTATGGGTATTGCAGATTCTTTTCTAATCTTTTGTTGATTTTCTGGTAATCTTTCTTTTCTTTGCTTGTCTCTTACGGAAATGTTTTCTGGGTTTGGTTTGATTCTTGTTCTTGATTTTGTTTGTTGGATTTGTTGAATGGTGTTAATGGATTATCTAAAGTTTGATTTTTTTCTAGTTGGGTTTTGAGTGGTTATTGTAGTATATGCTTGTTTTACAAAAGAGAATGGTTTGCAGAAGTTAAGTTTAGCCTATTTACAACTTAAGTACTAATTAGACGGCAAATGCATTTTGAGTTGAATTACCTTTTGCAGAAGTTTACTTAACAGCAGATACATTTACTAACTTAGTTTGTTATTGGATGCTTTTAGTACCGATTGGATCTTTTCATCAAGATCCCTAGTTTGTGCTGTTGGTGAGAGGTATGGTTTAGATTTGCTGTAAATGTGATTGCATTGGAGTGAAATTATCCTTAATTAGTTCATCTTTGATCATAACAAGTTTAAGAGGCTTAAGACTCATCACTATCTTGTGCTATATGTGTATCTTACTATCATACTTGATCATAATAGGTTTGAGGGGGTTCAGTGGGTGCGTGCTACATCATATTTTGCTAGGGGAGGATTGACTTTGTTTCCAGGGTCGTGATATGATCGATCCATGATCCTGTAGAGAAATAGGGTAAACCTTGTTTGTTATTTGGAAAGTGTGATTAACTTGTGTAGTCAGCTCTTGCAAATGTTTGCAACTAACGAGTGAAATTCTGTTGATTGCTTCAGCTTTATTGTGGCCCAATTTATGGCCTTCAGTCATATTCACATATTAGTAAGAAGATTAGATTCTTCTCATTAGTGGCCAGGCTATTTTGGATGAACTATTATGTCGATAGTGGTAACATTGATGTGTTTTCTTTTCTATTGAATTTCGAATATCAAAGATCAGACATATCTTAGAGTTGAATTTATGGATTCATTTACAGTAATTACGTAGCTTGAGTGTTGATTAATGTTGAACTTGCGTGTTACCGTGCACACTGGTAAAACATTTGCATTTTGTGTGATCTCCTTCTGGCAGGAATTGAAACTTCTCTGTCTGCATCAGTTCTCTTATTTGGGAGGATTATTATTAGCGGGTAATGCTGTTTGATCAGGAGGCTGGTATTGAGAAGACCGAATAGGTTATTCAAAGAAAATGGTAGCTAATGCTCCTTCGATGTTAATGTGGACTTAGCGAGAGCAATGTACTAGGCAGGCTGTTCAATGGTTCGATAACTAGTAGTATTAATTTGTGATGTCTATTTAGGTCGTATGTTCATTAAGCTTTTTAAATTCAGGCTGACACCGTCCTACCCTTCCTACCTCTCCTTTCTTGAATAATTGTTAAAAAGGAAGTTTTGGTGGAGCCCTTTATGTATAGAGTTTCAACTTAAGCAAGCAAAACCGATTTGTAGCATAAGAAATTATTGGTGTCTGGCATCAGGTCCAAAATTACTGGTTGCACTTCGTGATGGTATTTTATCTGGTAATTCTGAATAATCTGTCTGAGGTGTTGCTGTATTTGTTGCGAATCTGTCCAAGCAATTTTACTTTCATATATATTATTGGGTACTTCAGCATGTGATATTAGTATCAGGCGATGCTCTTGCTAAATGCTGGACAATTTTCATCAATAAAATGATTACGTATAAAAGAAGATTAGCCTATACTTTTGTTATTTGCAGTTTTTTTCCTTAAACTCTCTGTTTTGCTCATTGTCTCATTACTATCGTTCTCACTTTCTAATCGTAGATCATTGAAAGTGGATCCTGCAGATTACCTTCTTTCTCTTTTTTCTGTTTCTATTTTTATTAGTTTTATGTTATTTCCTTTTCTGCTGTTACTTAGAGTCTCCATTTATTAATTGCAGGATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATGAGGTTGTTGGTACAAAAGGAGTTGTCAAGAAAGTTGAATTTGTTCGGATTATAACTGAGGCATTAGATTCTCTTGGTTACAAAAAGACTCGGGCCTTACTAGAGGAAGAGTCAGGGATACCCTTGCACACTTCCGTCGTAAATTTGTTTATGCAGCAAATTCTTGATGGTAAATGGGATGAAAGTTTAAACACATTGCGAAATATTGGTCTGGTGGATGAAAAAATTGTAAAGTTGGCA-TCTTTTGTGATATTGGAGCAGAAGTTTT</genome_strand>
        <mrna_strand>GCCAAACAACTCTTTCCT-CCATTTCTCTATTCACAAGTTCTCCATTAACACAAATACTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATGAGGTTGTTGGTACAAAAGGAGTTGTCAAGAAAGTTGAATTTGTTCGGATTATAACTGAGGCATTAGATTCTCTTGGTTACAAAAAGACTCGGGCCTTACTAGAGGAAGAGTCAGGGATACCCTTGCACACTTCCGTCGTAAATTTGTTTATGCAGCAAATTCTTGATGGTAAATGGGATGAAAGTTTAAACACATTGCGAAATATTGGTCTGGTGGATGAAAAAATTGTAAAGTTGGCATTCTTTTGTGATATTGGAGCAGAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E333282" ref_strand="+" ref_description="SGN-E333282 [cTOD-20-K21]">
      <seq>ccaaacaactctttcctccatttctctattcacaagttctccattaacacaaatactcaaatctctctacaagattcttactctcaacaatcaatcatataccttttttagctttcaatcgactgcttgtttacccacctaatctactagtcttagcttaccgacaaacgagagggaataaaagaatacaatttgggataaaaccatttgcgatttgctggtttttcaatcagtgatttaggcctactattccaacttttcagttttgtcttcctcctgctgttatatatgggctgacgcgtttgtttcatgggagctgaggacgatgatgaaccaccatcaaaacgtgtgaaggtatcctccagtcaattggtagatatttctgacaggacatttgttagagatcctgtaagttgttcattgggtgactcgatggctcgacccctgactcttcaaggggacgatgaggttgttggtacaaaaggagttgtcaagaaagttgaatttgttcggattataactgaggcattagattctcttggttacaaaaagactcgggccttactagaggaagagtcagggatacccttgcacacttccgtcgtaaatttgtttatgcagcaaattcttgatggtaaatgggatgaaagtttaaacacattgcgaaatattggtctggtggatgaaaaaattgtaaagttggcatcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="41936" stop="38686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41637" g_stop="41404" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41403" i_stop="39464" i_length="1940">
            <donor d_prob="0.016" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39463" g_stop="38986" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="712" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E333282" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41637" e_stop="41404"/>
          <exon e_start="39463" e_stop="38986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACAACTCTTTCCTCCCATTTCTCTATTCACAAGTTCTCCATT-ACACAAATACTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGTGTATGTATCCATTTTGATCTGAATCTTCAAATTGCTTTATGGGTATTGCAGATTCTTTTCTAATCTTTTGTTGATTTTCTGGTAATCTTTCTTTTCTTTGCTTGTCTCTTACGGAAATGTTTTCTGGGTTTGGTTTGATTCTTGTTCTTGATTTTGTTTGTTGGATTTGTTGAATGGTGTTAATGGATTATCTAAAGTTTGATTTTTTTCTAGTTGGGTTTTGAGTGGTTATTGTAGTATATGCTTGTTTTACAAAAGAGAATGGTTTGCAGAAGTTAAGTTTAGCCTATTTACAACTTAAGTACTAATTAGACGGCAAATGCATTTTGAGTTGAATTACCTTTTGCAGAAGTTTACTTAACAGCAGATACATTTACTAACTTAGTTTGTTATTGGATGCTTTTAGTACCGATTGGATCTTTTCATCAAGATCCCTAGTTTGTGCTGTTGGTGAGAGGTATGGTTTAGATTTGCTGTAAATGTGATTGCATTGGAGTGAAATTATCCTTAATTAGTTCATCTTTGATCATAACAAGTTTAAGAGGCTTAAGACTCATCACTATCTTGTGCTATATGTGTATCTTACTATCATACTTGATCATAATAGGTTTGAGGGGGTTCAGTGGGTGCGTGCTACATCATATTTTGCTAGGGGAGGATTGACTTTGTTTCCAGGGTCGTGATATGATCGATCCATGATCCTGTAGAGAAATAGGGTAAACCTTGTTTGTTATTTGGAAAGTGTGATTAACTTGTGTAGTCAGCTCTTGCAAATGTTTGCAACTAACGAGTGAAATTCTGTTGATTGCTTCAGCTTTATTGTGGCCCAATTTATGGCCTTCAGTCATATTCACATATTAGTAAGAAGATTAGATTCTTCTCATTAGTGGCCAGGCTATTTTGGATGAACTATTATGTCGATAGTGGTAACATTGATGTGTTTTCTTTTCTATTGAATTTCGAATATCAAAGATCAGACATATCTTAGAGTTGAATTTATGGATTCATTTACAGTAATTACGTAGCTTGAGTGTTGATTAATGTTGAACTTGCGTGTTACCGTGCACACTGGTAAAACATTTGCATTTTGTGTGATCTCCTTCTGGCAGGAATTGAAACTTCTCTGTCTGCATCAGTTCTCTTATTTGGGAGGATTATTATTAGCGGGTAATGCTGTTTGATCAGGAGGCTGGTATTGAGAAGACCGAATAGGTTATTCAAAGAAAATGGTAGCTAATGCTCCTTCGATGTTAATGTGGACTTAGCGAGAGCAATGTACTAGGCAGGCTGTTCAATGGTTCGATAACTAGTAGTATTAATTTGTGATGTCTATTTAGGTCGTATGTTCATTAAGCTTTTTAAATTCAGGCTGACACCGTCCTACCCTTCCTACCTCTCCTTTCTTGAATAATTGTTAAAAAGGAAGTTTTGGTGGAGCCCTTTATGTATAGAGTTTCAACTTAAGCAAGCAAAACCGATTTGTAGCATAAGAAATTATTGGTGTCTGGCATCAGGTCCAAAATTACTGGTTGCACTTCGTGATGGTATTTTATCTGGTAATTCTGAATAATCTGTCTGAGGTGTTGCTGTATTTGTTGCGAATCTGTCCAAGCAATTTTACTTTCATATATATTATTGGGTACTTCAGCATGTGATATTAGTATCAGGCGATGCTCTTGCTAAATGCTGGACAATTTTCATCAATAAAATGATTACGTATAAAAGAAGATTAGCCTATACTTTTGTTATTTGCAGTTTTTTTCCTTAAACTCTCTGTTTTGCTCATTGTCTCATTACTATCGTTCTCACTTTCTAATCGTAGATCATTGAAAGTGGATCCTGCAGATTACCTTCTTTCTCTTTTTTCTGTTTCTATTTTTATTAGTTTTATGTTATTTCCTTTTCTGCTGTTACTTAGAGTCTCCATTTATTAATTGCAGGATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATGAGGTTGTTGGTACAAAAGGAGTTGTCAAGAAAGTTGAATTTGTTCGGATTATAACTGAGGCATTAGATTCTCTTGGTTACAAAAAGACTCGGGCCTTACTAGAGGAAGAGTCAGGGATACCCTTGCACACTTCCGTCGTAAATTTGTTTATGCAGCAAATTCTTGATGGTAAATGGGATGAAAGTTTAAACACATTGCGAAATATTGGTCTGGTGGATGAAAAAATTGTAAAGTTGGCATCTTTTG</genome_strand>
        <mrna_strand>CCAAACAACTCTTTCCT-CCATTTCTCTATTCACAAGTTCTCCATTAACACAAATACTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATGAGGTTGTTGGTACAAAAGGAGTTGTCAAGAAAGTTGAATTTGTTCGGATTATAACTGAGGCATTAGATTCTCTTGGTTACAAAAAGACTCGGGCCTTACTAGAGGAAGAGTCAGGGATACCCTTGCACACTTCCGTCGTAAATTTGTTTATGCAGCAAATTCTTGATGGTAAATGGGATGAAAGTTTAAACACATTGCGAAATATTGGTCTGGTGGATGAAAAAATTGTAAAGTTGGCATCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-I2lpeW/sgn_ests_tomato" ref_id="SGN-E331285" ref_strand="+" ref_description="SGN-E331285 [cTOD-6-B20]">
      <seq>caactctttcctccatttctctattcacaagttctccattaacacaaatgctcaaatctctctacaagattcttactctcaacaatcaatcatataccttttttagctttcaatcgactgcttgtttacccacctaatctactagtcttagcttaccgacaaacgagagggaataaaagaatacaatttgggataaaaccatttgcgatttgctggtttttcaatcagtgtatgtatccattttgatctgaatcttcaaattgctttatgggtattgcagattcttttctaatcttttgttgattttctggatttaggcctactattccaacttttcagttttgtcttcctcctgctgttatatatgggctgacgcgtttgtttcatgggagctgaggacgatgatgaaccaccatcaaaacgtgtgaaggtatcctccagtcaattggtagatatttctgacaggacatttgttagagatcctgtaagttgttcattgggtgactcgatggctcgacccctgactcttcaaggggacgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-0GDIK/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.1" temp_strand="-" temp_description="C07HBa0044H04.1  AC212614.1 htgs_phase:1 submitted_to_sgn_as:gi|158262110|gb|AC212614.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces">
        <position start="41932" stop="38932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41632" g_stop="41323" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41322" i_stop="39464" i_length="1859">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39463" g_stop="39232" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="542" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.1" gen_strand="-" ref_id="SGN-E331285" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41632" e_stop="41323"/>
          <exon e_start="39463" e_stop="39232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCTTTCCTCCCATTTCTCTATTCACAAGTTCTCCATT-ACACAAATACTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGTGTATGTATCCATTTTGATCTGAATCTTCAAATTGCTTTATGGGTATTGCAGATTCTTTTCTAATCTTTTGTTGATTTTCTGGTAATCTTTCTTTTCTTTGCTTGTCTCTTACGGAAATGTTTTCTGGGTTTGGTTTGATTCTTGTTCTTGATTTTGTTTGTTGGATTTGTTGAATGGTGTTAATGGATTATCTAAAGTTTGATTTTTTTCTAGTTGGGTTTTGAGTGGTTATTGTAGTATATGCTTGTTTTACAAAAGAGAATGGTTTGCAGAAGTTAAGTTTAGCCTATTTACAACTTAAGTACTAATTAGACGGCAAATGCATTTTGAGTTGAATTACCTTTTGCAGAAGTTTACTTAACAGCAGATACATTTACTAACTTAGTTTGTTATTGGATGCTTTTAGTACCGATTGGATCTTTTCATCAAGATCCCTAGTTTGTGCTGTTGGTGAGAGGTATGGTTTAGATTTGCTGTAAATGTGATTGCATTGGAGTGAAATTATCCTTAATTAGTTCATCTTTGATCATAACAAGTTTAAGAGGCTTAAGACTCATCACTATCTTGTGCTATATGTGTATCTTACTATCATACTTGATCATAATAGGTTTGAGGGGGTTCAGTGGGTGCGTGCTACATCATATTTTGCTAGGGGAGGATTGACTTTGTTTCCAGGGTCGTGATATGATCGATCCATGATCCTGTAGAGAAATAGGGTAAACCTTGTTTGTTATTTGGAAAGTGTGATTAACTTGTGTAGTCAGCTCTTGCAAATGTTTGCAACTAACGAGTGAAATTCTGTTGATTGCTTCAGCTTTATTGTGGCCCAATTTATGGCCTTCAGTCATATTCACATATTAGTAAGAAGATTAGATTCTTCTCATTAGTGGCCAGGCTATTTTGGATGAACTATTATGTCGATAGTGGTAACATTGATGTGTTTTCTTTTCTATTGAATTTCGAATATCAAAGATCAGACATATCTTAGAGTTGAATTTATGGATTCATTTACAGTAATTACGTAGCTTGAGTGTTGATTAATGTTGAACTTGCGTGTTACCGTGCACACTGGTAAAACATTTGCATTTTGTGTGATCTCCTTCTGGCAGGAATTGAAACTTCTCTGTCTGCATCAGTTCTCTTATTTGGGAGGATTATTATTAGCGGGTAATGCTGTTTGATCAGGAGGCTGGTATTGAGAAGACCGAATAGGTTATTCAAAGAAAATGGTAGCTAATGCTCCTTCGATGTTAATGTGGACTTAGCGAGAGCAATGTACTAGGCAGGCTGTTCAATGGTTCGATAACTAGTAGTATTAATTTGTGATGTCTATTTAGGTCGTATGTTCATTAAGCTTTTTAAATTCAGGCTGACACCGTCCTACCCTTCCTACCTCTCCTTTCTTGAATAATTGTTAAAAAGGAAGTTTTGGTGGAGCCCTTTATGTATAGAGTTTCAACTTAAGCAAGCAAAACCGATTTGTAGCATAAGAAATTATTGGTGTCTGGCATCAGGTCCAAAATTACTGGTTGCACTTCGTGATGGTATTTTATCTGGTAATTCTGAATAATCTGTCTGAGGTGTTGCTGTATTTGTTGCGAATCTGTCCAAGCAATTTTACTTTCATATATATTATTGGGTACTTCAGCATGTGATATTAGTATCAGGCGATGCTCTTGCTAAATGCTGGACAATTTTCATCAATAAAATGATTACGTATAAAAGAAGATTAGCCTATACTTTTGTTATTTGCAGTTTTTTTCCTTAAACTCTCTGTTTTGCTCATTGTCTCATTACTATCGTTCTCACTTTCTAATCGTAGATCATTGAAAGTGGATCCTGCAGATTACCTTCTTTCTCTTTTTTCTGTTTCTATTTTTATTAGTTTTATGTTATTTCCTTTTCTGCTGTTACTTAGAGTCTCCATTTATTAATTGCAGGATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATG</genome_strand>
        <mrna_strand>CAACTCTTTCCT-CCATTTCTCTATTCACAAGTTCTCCATTAACACAAATGCTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGTGTATGTATCCATTTTGATCTGAATCTTCAAATTGCTTTATGGGTATTGCAGATTCTTTTCTAATCTTTTGTTGATTTTCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>54</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="12192" PGL_stop="6697"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12192" e_stop="12011"/>
            <exon e_start="11910" e_stop="11783"/>
            <exon e_start="11304" e_stop="11154"/>
            <exon e_start="10981" e_stop="10778"/>
            <exon e_start="9578" e_stop="9154"/>
            <exon e_start="8849" e_stop="8657"/>
            <exon e_start="8568" e_stop="8473"/>
            <exon e_start="7969" e_stop="7814"/>
            <exon e_start="7194" e_stop="6697"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.657" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12192" e_stop="12011" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12010" i_stop="11911" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11910" e_stop="11783" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="11782" i_stop="11305" i_length="478"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11304" e_stop="11154" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11153" i_stop="10982" i_length="172"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10981" e_stop="10778" e_length="204"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="10777" i_stop="9579" i_length="1199"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="9578" e_stop="9154" e_length="425"/>
          </exon>
          <intron i_serial="5" don_prob="0.657" acc_prob="0.945">
            <gDNA_intron_boundary i_start="9153" i_stop="8850" i_length="304"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="8849" e_stop="8657" e_length="193"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="8656" i_stop="8569" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="8568" e_stop="8473" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="8472" i_stop="7970" i_length="503"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="7969" e_stop="7814" e_length="156"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7813" i_stop="7195" i_length="619"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="7194" e_stop="6697" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12192" stop="12011"/>
              <exon start="11910" stop="11783"/>
              <exon start="11304" stop="11154"/>
              <exon start="10981" stop="10778"/>
              <exon start="9578" stop="9428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12192" stop="12011"/>
              <exon start="11910" stop="11783"/>
              <exon start="11304" stop="11154"/>
              <exon start="10981" stop="10778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12192" stop="12011"/>
              <exon start="11910" stop="11783"/>
              <exon start="11304" stop="11154"/>
              <exon start="10981" stop="10810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12192" stop="12011"/>
              <exon start="11910" stop="11783"/>
              <exon start="11304" stop="11154"/>
              <exon start="10981" stop="10816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12192" stop="12011"/>
              <exon start="11910" stop="11783"/>
              <exon start="11304" stop="11154"/>
              <exon start="10981" stop="10860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12134" stop="12011"/>
              <exon start="11910" stop="11783"/>
              <exon start="11304" stop="11154"/>
              <exon start="10981" stop="10778"/>
              <exon start="9578" stop="9437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12078" stop="12011"/>
              <exon start="11910" stop="11783"/>
              <exon start="11304" stop="11154"/>
              <exon start="10981" stop="10778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12022" stop="12011"/>
              <exon start="11910" stop="11783"/>
              <exon start="11304" stop="11154"/>
              <exon start="10981" stop="10778"/>
              <exon start="9578" stop="9275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11282" stop="11154"/>
              <exon start="10981" stop="10778"/>
              <exon start="9578" stop="9154"/>
              <exon start="8849" stop="8777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11281" stop="11154"/>
              <exon start="10981" stop="10778"/>
              <exon start="9578" stop="9154"/>
              <exon start="8849" stop="8817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11279" stop="11154"/>
              <exon start="10981" stop="10778"/>
              <exon start="9578" stop="9171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11231" stop="11154"/>
              <exon start="10981" stop="10778"/>
              <exon start="9578" stop="9154"/>
              <exon start="8849" stop="8789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10973" stop="10778"/>
              <exon start="9578" stop="9154"/>
              <exon start="8849" stop="8657"/>
              <exon start="8568" stop="8514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10870" stop="10778"/>
              <exon start="9578" stop="9154"/>
              <exon start="8849" stop="8657"/>
              <exon start="8568" stop="8507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10870" stop="10778"/>
              <exon start="9578" stop="9154"/>
              <exon start="8849" stop="8657"/>
              <exon start="8568" stop="8537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10830" stop="10778"/>
              <exon start="9578" stop="9154"/>
              <exon start="8849" stop="8657"/>
              <exon start="8568" stop="8473"/>
              <exon start="7969" stop="7906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9569" stop="9154"/>
              <exon start="8849" stop="8657"/>
              <exon start="8568" stop="8473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9561" stop="9154"/>
              <exon start="8849" stop="8657"/>
              <exon start="8568" stop="8473"/>
              <exon start="7969" stop="7814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9406" stop="9154"/>
              <exon start="8849" stop="8657"/>
              <exon start="8568" stop="8473"/>
              <exon start="7969" stop="7870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9385" stop="9154"/>
              <exon start="8849" stop="8657"/>
              <exon start="8568" stop="8473"/>
              <exon start="7969" stop="7861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9346" stop="9154"/>
              <exon start="8849" stop="8657"/>
              <exon start="8568" stop="8473"/>
              <exon start="7969" stop="7949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9346" stop="9154"/>
              <exon start="8849" stop="8657"/>
              <exon start="8568" stop="8473"/>
              <exon start="7969" stop="7955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9210" stop="9154"/>
              <exon start="8849" stop="8657"/>
              <exon start="8568" stop="8473"/>
              <exon start="7969" stop="7903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9187" stop="9154"/>
              <exon start="8849" stop="8657"/>
              <exon start="8568" stop="8473"/>
              <exon start="7969" stop="7814"/>
              <exon start="7194" stop="7158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8774" stop="8657"/>
              <exon start="8568" stop="8473"/>
              <exon start="7969" stop="7814"/>
              <exon start="7194" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8676" stop="8657"/>
              <exon start="8568" stop="8473"/>
              <exon start="7969" stop="7814"/>
              <exon start="7194" stop="6999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8552" stop="8473"/>
              <exon start="7969" stop="7814"/>
              <exon start="7194" stop="6862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8541" stop="8473"/>
              <exon start="7969" stop="7814"/>
              <exon start="7194" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7931" stop="7814"/>
              <exon start="7194" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7912" stop="7814"/>
              <exon start="7194" stop="6697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7912" stop="7814"/>
              <exon start="7194" stop="6697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7888" stop="7814"/>
              <exon start="7194" stop="6736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7863" stop="7814"/>
              <exon start="7194" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299673" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7843" stop="7814"/>
              <exon start="7194" stop="6706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7194" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714366" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAG : GGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGG : TGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG : TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG : AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAG : CGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAG : GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG : ATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT : GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTATATTTCTGTATCTGTCAGAGAAATAGTATGGTCCAGTTGAAGTT</gDNA_template>
            <first_frame> N  F  *  D  L  R  *  W  V  V  Q  E  M  H  G  N  *  R  T  I  L  S  F  L  R  E  R  L  L  L  L  L  F  W  M  V  G  V  R  L  N  L  M  S  I  T  L  S  L  L  L  K  L  L  L  W  T  H  S  R  R :   V  L  L  N  I  G  D  *  L  R  H  M  E  M  L  W  G  F  P  Q  R  M  I  W  V  T  V  K  L  V  T  M  L  L  G  L  E  G  S  L  L  K   : V  Q  S  L  L  T  *  P  L  P  L  G  K  S  M  M  E  K  V  S  N  T  F  K  N  V  L  R  K  E  L  C  T  L  L  V  S  *  V  M  G  V  S  T  P  G  L  T  N  C  C :   C  Y  *  K  V  L  L  S  V  V  P  K  E  F  V  S  M  P  S  P  M  D  V  M  F  W  M  V  L  V  W  A  S  W  R  P  S  R  M  I  *  Q  N  Y  V  D  K  V  L  M  P  G  L  H  L  V  E  V  A  C  M  L  P  W  I  V  M  R :   M  T  G  M  S  *  K  E  V  G  M  H  K  F  L  V  R  L  H  T  I  S  R  I  P  L  R  Q  L  R  S  *  G  R  N  P  M  P  M  I  N  T  *  P  L  L  L  L  L  M  I  M  E  S  L  L  V  L  F  W  M  V  M  L  S  *  L  S  T  S  E  Q  I  V  W  S  C  L  Q  R  P  L  N  M  R  I  S  I  N  L  I  V  Y  E  S  L  K  S  I  M  L  V  C  S  N  M  T  V  N  *  S  F  Q  A  N  T  L  F  L  L  Q  R  L  T  G  H  L  G  S  I  *  C  A  M  V  F  G  L  L  L  V   : A  R  P  L  N  L  V  M  S  P  S  F  G  M  E  T  V  L  G  I  L  T  R  N  W  K  S  M  W  K  F  Q  V  T  V  G  L  H  L  M  L  S  Q  K  *  R  H  W  R  L  L  K  G  L  G  R  P  S  L  A  T  N  L  I  R :   Y  V  *  T  Y  L  T  V  I  W  W  A  I  L  V  T  S  K  Q  Q  L  K  L  A  R  L  P  M  M  V  S  R :   *  S  L  M  L  L  S  K  W  V  E  F  S  L  L  L  L  T  M  E  M  L  K  I  W  L  R  E  T  R  R  E  S  H  Y  L  T  K  M  E  T  F  R  F  S  L  L  T  L  S  N  L :   F  L  L  Q  L  V  V  L  D  L  Y  L  V  *  D  S  A  Q  I  S  P  P  V  D  L  L  M  L  L  Q  P  L  *  I  C  T  D  T  R  R  L  A  I  T  S  Q  P  *  S  K  L  W  T  T  R  *  S  H  R  P  *  G  *  S  F  G  A  R  R  K  R  *  *  P  F  Y  T  L  F  I  *  I  R  H  F  *  A  Y  I  N  R  G  *  H  S  T  T  W  P  V  M  M  L  *  W  K  S  V  I  Y  Y  C  S  F  *  T  L  L  S  F  K  A  *  L  R  V  F  V  F  W  *  T  R  I  L  N  L  S  L  F  V  A  E  I  Y  *  L  F  D  A  L  Y  F  C  I  C  Q  R  N  S  M  V  Q  L  K   </first_frame>
            <second_frame>  I  F  K  I  *  D  N  G  *  F  R  R  C  M  E  I  E  G  P  S  *  A  S  *  G  K  D  C  C  C  Y  C  F  G  W  L  G  *  G  *  T  *  *  V  *  R  Y  L  C  C  *  N  S  C  Y  G  L  T  Q  E   : G  C  S  *  T  L  E  I  D  *  G  T  W  K  C  C  G  A  S  H  R  G  *  Y  G  *  Q  *  S  W  S  Q  C  S  W  G  W  K  D  L  C  S  R  :  C  K  A  C  *  P  S  P  C  L  W  E  N  L  *  W  R  R  F  Q  I  R  S  R  M  F  *  E  R  N  S  A  P  Y  W  S  R  E  *  W  G  C  P  L  Q  A  *  P  T  A   : V  A  T  E  R  C  C  *  A  W  C  Q  K  N  S  C  P  C  P  H  R  W  T  *  C  S  G  W  F  *  C  G  L  H  G  D  P  R  E  *  S  S  K  I  T  W  T  R  C  *  C  P  G  C  I  W  W  R  S  H  V  C  Y  H  G  S  L  *   : E  *  L  G  C  R  K  K  R  L  G  C  T  S  S  W  *  G  S  T  P  F  Q  G  S  R  *  G  N  *  E  V  E  A  G  T  Q  C  Q  *  S  I  L  S  P  F  C  C  C  *  *  *  W  K  A  C  W  S  Y  F  G  W  *  C  C  R  D  F  Q  L  Q  S  R  S  Y  G  H  A  C  K  G  P  *  I  *  E  F  R  *  I  *  S  C  T  S  P  *  N  P  L  C  W  Y  A  P  I  *  R  *  I  E  A  S  K  Q  I  P  C  F  S  S  R  D  *  Q  D  I  W  G  V  S  S  A  Q  W  Y  S  D  F  C  L  *  :  R  D  R  *  I  W  S  C  H  L  L  L  E  W  K  P  F  W  V  F  *  R  E  I  G  R  V  C  G  N  S  K  *  Q  W  D  Y  I  *  C  *  A  K  N  E  G  T  G  D  C  *  K  G  *  G  G  H  P  *  P  Q  I  *  S   : G  T  C  E  L  T  *  Q  *  Y  G  G  P  Y  W  *  H  Q  S  N  N  *  S  L  Q  G  C  R  *  W  C  Q   : D  D  P  *  C  Y  *  A  S  G  W  N  F  P  C  Y  C  *  P  W  K  C  *  R  Y  G  *  E  K  Q  E  G  R  A  I  T  *  Q  K  W  K  H  S  D  S  H  F  S  H  S  R  T   : C  S  Y  C  N  W  W  S  W  T  C  T  W  C  E  I  P  H  R  S  P  H  R  W  T  C  *  C  C  F  N  L  Y  E  S  A  R  I  R  G  A  *  R  L  R  A  N  L  D  R  S  C  G  Q  L  D  N  L  I  D  L  R  V  E  V  L  A  Q  E  E  S  D  N  D  H  S  T  L  C  L  F  E  *  D  I  F  E  L  I  S  T  E  V  D  I  L  P  R  G  L  *  *  C  Y  D  G  R  V  *  Y  T  T  V  H  F  K  P  C  C  L  S  R  H  N  F  E  F  L  F  F  G  E  Q  E  F  L  I  F  H  Y  L  W  Q  K  Y  I  S  C  L  M  L  Y  I  S  V  S  V  R  E  I  V  W  S  S  *  S  </second_frame>
            <third_frame>   F  L  R  S  E  I  M  G  S  S  G  D  A  W  K  L  K  D  H  P  K  L  P  K  G  K  T  V  A  V  I  V  L  D  G  W  G  E  A  K  P  N  E  Y  N  A  I  S  V  A  E  T  P  V  M  D  S  L  K  K  :  G  A  P  E  H  W  R  L  I  K  A  H  G  N  A  V  G  L  P  T  E  D  D  M  G  N  S  E  V  G  H  N  A  L  G  A  G  R  I  F  A  Q  G :   A  K  L  V  D  L  A  L  A  S  G  K  I  Y  D  G  E  G  F  K  Y  V  Q  E  C  F  E  K  G  T  L  H  L  I  G  L  V  S  D  G  G  V  H  S  R  L  D  Q  L  L  :  L  L  L  K  G  A  A  E  R  G  A  K  R  I  R  V  H  A  L  T  D  G  R  D  V  L  D  G  S  S  V  G  F  M  E  T  L  E  N  D  L  A  K  L  R  G  Q  G  V  D  A  R  V  A  S  G  G  G  R  M  Y  V  T  M  D  R  Y  E  :  N  D  W  D  V  V  K  R  G  W  D  A  Q  V  L  G  E  A  P  H  H  F  K  D  P  V  E  A  I  K  K  L  R  Q  E  P  N  A  N  D  Q  Y  L  A  P  F  V  V  V  D  D  N  G  K  P  V  G  P  I  L  D  G  D  A  V  V  T  F  N  F  R  A  D  R  M  V  M  L  A  K  A  L  E  Y  E  N  F  D  K  F  D  R  V  R  V  P  K  I  H  Y  A  G  M  L  Q  Y  D  G  E  L  K  L  P  S  K  Y  L  V  S  P  P  E  I  D  R  T  S  G  E  Y  L  V  R  N  G  I  R  T  F  A  C  S :   E  T  V  K  F  G  H  V  T  F  F  W  N  G  N  R  S  G  Y  F  D  E  K  L  E  E  Y  V  E  I  P  S  D  S  G  I  T  F  N  V  K  P  K  M  K  A  L  E  I  A  E  R  A  R  E  A  I  L  S  H  K  F  D  Q  :  V  R  V  N  L  P  N  S  D  M  V  G  H  T  G  D  I  K  A  T  I  E  A  C  K  A  A  D  D  G  V  K  :  M  I  L  D  A  I  E  Q  V  G  G  I  F  L  V  T  A  D  H  G  N  A  E  D  M  V  K  R  N  K  K  G  E  P  L  L  D  K  N  G  N  I  Q  I  L  T  S  H  T  L  E  P  :  V  P  I  A  I  G  G  P  G  L  V  P  G  V  R  F  R  T  D  L  P  T  G  G  L  A  N  V  A  S  T  F  M  N  L  H  G  Y  E  A  P  S  D  Y  E  P  T  L  I  E  V  V  D  N  *  I  I  S  *  T  L  G  L  K  F  W  R  K  K  K  A  I  M  T  I  L  H  F  V  Y  L  N  K  T  F  L  S  L  Y  Q  Q  R  L  T  F  Y  H  V  A  C  N  D  A  M  M  E  E  C  D  I  L  L  F  I  L  N  P  V  V  F  Q  G  I  T  S  S  F  C  F  L  V  N  K  N  S  *  S  F  T  I  C  G  R  N  I  L  V  V  *  C  S  I  F  L  Y  L  S  E  K  *  Y  G  P  V  E  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12190" stop="12011"/>
                    <exon start="11910" stop="11783"/>
                    <exon start="11304" stop="11154"/>
                    <exon start="10981" stop="10778"/>
                    <exon start="9578" stop="9154"/>
                    <exon start="8849" stop="8657"/>
                    <exon start="8568" stop="8473"/>
                    <exon start="7969" stop="7814"/>
                    <exon start="7194" stop="7030"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1695</number_coding_nucleotides>
                  <number_encoded_amino_acids>565</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLRSEIMGSSGDAWKLKDHPKLPKGKTVAVIVLDGWGEAKPNEYNAISVAETPVMDSLKKGAPEHWRLIKAHGNAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYDGEGFKYVQECFEKGTLHLIGLVSDGGVHSRLDQLLLLLKGAAERGAKRIRVHALTDGRDVLDGSSVGFMETLENDLAKLRGQGVDARVASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHHFKDPVEAIKKLRQEPNANDQYLAPFVVVDDNGKPVGPILDGDAVVTFNFRADRMVMLAKALEYENFDKFDRVRVPKIHYAGMLQYDGELKLPSKYLVSPPEIDRTSGEYLVRNGIRTFACSETVKFGHVTFFWNGNRSGYFDEKLEEYVEIPSDSGITFNVKPKMKALEIAERAREAILSHKFDQVRVNLPNSDMVGHTGDIKATIEACKAADDGVKMILDAIEQVGGIFLVTADHGNAEDMVKRNKKGEPLLDKNGNIQILTSHTLEPVPIAIGGPGLVPGVRFRTDLPTGGLANVASTFMNLHGYEAPSDYEPTLIEVVDN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7017" stop="6787"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLGLKFWRKKKAIMTILHFVYLNKTFLSLYQQRLTFYHVACNDAMMEECDILLFILNPVVFQGITSSFCFLVNKNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12192" e_stop="12011"/>
            <exon e_start="11910" e_stop="11783"/>
            <exon e_start="11304" e_stop="11154"/>
            <exon e_start="10981" e_stop="10778"/>
            <exon e_start="9578" e_stop="8810"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12192" e_stop="12011" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12010" i_stop="11911" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11910" e_stop="11783" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="11782" i_stop="11305" i_length="478"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11304" e_stop="11154" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11153" i_stop="10982" i_length="172"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10981" e_stop="10778" e_length="204"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="10777" i_stop="9579" i_length="1199"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="9578" e_stop="8810" e_length="769"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12192" stop="12011"/>
              <exon start="11910" stop="11783"/>
              <exon start="11304" stop="11154"/>
              <exon start="10981" stop="10778"/>
              <exon start="9578" stop="9428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12192" stop="12011"/>
              <exon start="11910" stop="11783"/>
              <exon start="11304" stop="11154"/>
              <exon start="10981" stop="10778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12192" stop="12011"/>
              <exon start="11910" stop="11783"/>
              <exon start="11304" stop="11154"/>
              <exon start="10981" stop="10810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12192" stop="12011"/>
              <exon start="11910" stop="11783"/>
              <exon start="11304" stop="11154"/>
              <exon start="10981" stop="10816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12192" stop="12011"/>
              <exon start="11910" stop="11783"/>
              <exon start="11304" stop="11154"/>
              <exon start="10981" stop="10860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12134" stop="12011"/>
              <exon start="11910" stop="11783"/>
              <exon start="11304" stop="11154"/>
              <exon start="10981" stop="10778"/>
              <exon start="9578" stop="9437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12078" stop="12011"/>
              <exon start="11910" stop="11783"/>
              <exon start="11304" stop="11154"/>
              <exon start="10981" stop="10778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12022" stop="12011"/>
              <exon start="11910" stop="11783"/>
              <exon start="11304" stop="11154"/>
              <exon start="10981" stop="10778"/>
              <exon start="9578" stop="9275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11279" stop="11154"/>
              <exon start="10981" stop="10778"/>
              <exon start="9578" stop="9171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9254" stop="8810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245140" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAG : GGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGG : TGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG : TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG : AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAAT</gDNA_template>
            <first_frame> N  F  *  D  L  R  *  W  V  V  Q  E  M  H  G  N  *  R  T  I  L  S  F  L  R  E  R  L  L  L  L  L  F  W  M  V  G  V  R  L  N  L  M  S  I  T  L  S  L  L  L  K  L  L  L  W  T  H  S  R  R :   V  L  L  N  I  G  D  *  L  R  H  M  E  M  L  W  G  F  P  Q  R  M  I  W  V  T  V  K  L  V  T  M  L  L  G  L  E  G  S  L  L  K   : V  Q  S  L  L  T  *  P  L  P  L  G  K  S  M  M  E  K  V  S  N  T  F  K  N  V  L  R  K  E  L  C  T  L  L  V  S  *  V  M  G  V  S  T  P  G  L  T  N  C  C :   C  Y  *  K  V  L  L  S  V  V  P  K  E  F  V  S  M  P  S  P  M  D  V  M  F  W  M  V  L  V  W  A  S  W  R  P  S  R  M  I  *  Q  N  Y  V  D  K  V  L  M  P  G  L  H  L  V  E  V  A  C  M  L  P  W  I  V  M  R :   M  T  G  M  S  *  K  E  V  G  M  H  K  F  L  V  R  L  H  T  I  S  R  I  P  L  R  Q  L  R  S  *  G  R  N  P  M  P  M  I  N  T  *  P  L  L  L  L  L  M  I  M  E  S  L  L  V  L  F  W  M  V  M  L  S  *  L  S  T  S  E  Q  I  V  W  S  C  L  Q  R  P  L  N  M  R  I  S  I  N  L  I  V  Y  E  S  L  K  S  I  M  L  V  C  S  N  M  T  V  N  *  S  F  Q  A  N  T  L  F  L  L  Q  R  L  T  G  H  L  G  S  I  *  C  A  M  V  F  G  L  L  L  V  G  A  L  L  W  H  I  F  W  C  L  C  L  V  F  L  P  N  K  L  L  I  C  S  K  C  L  I  I  I  E  S  S  A  I  F  V  N  I  V  K  P  G  S  Q  L  A  S  C  I  L  R  N  K  I  K  W  *  I  K  R  L  V  G  S  K  Y  A  I  L  N  D  K  I  F  C  K  K  K  H  L  I  Y  K  S  L  N  F  L  *  T  S  I  N  N  S  G  S  C  F  N  S  E  T  V  K  F  G  H  V  T  F  F  W  N </first_frame>
            <second_frame>  I  F  K  I  *  D  N  G  *  F  R  R  C  M  E  I  E  G  P  S  *  A  S  *  G  K  D  C  C  C  Y  C  F  G  W  L  G  *  G  *  T  *  *  V  *  R  Y  L  C  C  *  N  S  C  Y  G  L  T  Q  E   : G  C  S  *  T  L  E  I  D  *  G  T  W  K  C  C  G  A  S  H  R  G  *  Y  G  *  Q  *  S  W  S  Q  C  S  W  G  W  K  D  L  C  S  R  :  C  K  A  C  *  P  S  P  C  L  W  E  N  L  *  W  R  R  F  Q  I  R  S  R  M  F  *  E  R  N  S  A  P  Y  W  S  R  E  *  W  G  C  P  L  Q  A  *  P  T  A   : V  A  T  E  R  C  C  *  A  W  C  Q  K  N  S  C  P  C  P  H  R  W  T  *  C  S  G  W  F  *  C  G  L  H  G  D  P  R  E  *  S  S  K  I  T  W  T  R  C  *  C  P  G  C  I  W  W  R  S  H  V  C  Y  H  G  S  L  *   : E  *  L  G  C  R  K  K  R  L  G  C  T  S  S  W  *  G  S  T  P  F  Q  G  S  R  *  G  N  *  E  V  E  A  G  T  Q  C  Q  *  S  I  L  S  P  F  C  C  C  *  *  *  W  K  A  C  W  S  Y  F  G  W  *  C  C  R  D  F  Q  L  Q  S  R  S  Y  G  H  A  C  K  G  P  *  I  *  E  F  R  *  I  *  S  C  T  S  P  *  N  P  L  C  W  Y  A  P  I  *  R  *  I  E  A  S  K  Q  I  P  C  F  S  S  R  D  *  Q  D  I  W  G  V  S  S  A  Q  W  Y  S  D  F  C  L  *  V  R  C  C  G  I  S  S  G  A  F  V  *  Y  F  C  R  I  N  C  *  F  A  Q  N  V  *  L  L  *  S  L  L  L  Y  L  L  T  L  *  S  L  E  V  N  W  P  L  V  F  *  E  I  K  *  N  G  E  L  R  G  *  L  E  V  N  M  P  F  *  M  I  K  Y  S  A  R  R  N  I  *  Y  I  R  V  *  I  F  F  E  L  V  L  T  T  P  V  L  V  S  T  A  R  P  L  N  L  V  M  S  P  S  F  G   </second_frame>
            <third_frame>   F  L  R  S  E  I  M  G  S  S  G  D  A  W  K  L  K  D  H  P  K  L  P  K  G  K  T  V  A  V  I  V  L  D  G  W  G  E  A  K  P  N  E  Y  N  A  I  S  V  A  E  T  P  V  M  D  S  L  K  K  :  G  A  P  E  H  W  R  L  I  K  A  H  G  N  A  V  G  L  P  T  E  D  D  M  G  N  S  E  V  G  H  N  A  L  G  A  G  R  I  F  A  Q  G :   A  K  L  V  D  L  A  L  A  S  G  K  I  Y  D  G  E  G  F  K  Y  V  Q  E  C  F  E  K  G  T  L  H  L  I  G  L  V  S  D  G  G  V  H  S  R  L  D  Q  L  L  :  L  L  L  K  G  A  A  E  R  G  A  K  R  I  R  V  H  A  L  T  D  G  R  D  V  L  D  G  S  S  V  G  F  M  E  T  L  E  N  D  L  A  K  L  R  G  Q  G  V  D  A  R  V  A  S  G  G  G  R  M  Y  V  T  M  D  R  Y  E  :  N  D  W  D  V  V  K  R  G  W  D  A  Q  V  L  G  E  A  P  H  H  F  K  D  P  V  E  A  I  K  K  L  R  Q  E  P  N  A  N  D  Q  Y  L  A  P  F  V  V  V  D  D  N  G  K  P  V  G  P  I  L  D  G  D  A  V  V  T  F  N  F  R  A  D  R  M  V  M  L  A  K  A  L  E  Y  E  N  F  D  K  F  D  R  V  R  V  P  K  I  H  Y  A  G  M  L  Q  Y  D  G  E  L  K  L  P  S  K  Y  L  V  S  P  P  E  I  D  R  T  S  G  E  Y  L  V  R  N  G  I  R  T  F  A  C  R  C  V  A  V  A  Y  L  L  V  P  L  F  S  I  F  A  E  *  I  A  N  L  L  K  M  S  D  Y  Y  R  V  F  C  Y  I  C  *  H  C  K  A  W  K  S  I  G  L  L  Y  F  K  K  *  N  K  M  V  N  *  E  V  S  W  K  *  I  C  H  S  K  *  *  N  I  L  Q  E  E  T  S  N  I  *  E  F  E  F  S  L  N  *  Y  *  Q  L  R  F  L  F  Q  Q  R  D  R  *  I  W  S  C  H  L  L  L  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12190" stop="12011"/>
                    <exon start="11910" stop="11783"/>
                    <exon start="11304" stop="11154"/>
                    <exon start="10981" stop="10778"/>
                    <exon start="9578" stop="9099"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1140</number_coding_nucleotides>
                  <number_encoded_amino_acids>380</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLRSEIMGSSGDAWKLKDHPKLPKGKTVAVIVLDGWGEAKPNEYNAISVAETPVMDSLKKGAPEHWRLIKAHGNAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYDGEGFKYVQECFEKGTLHLIGLVSDGGVHSRLDQLLLLLKGAAERGAKRIRVHALTDGRDVLDGSSVGFMETLENDLAKLRGQGVDARVASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHHFKDPVEAIKKLRQEPNANDQYLAPFVVVDDNGKPVGPILDGDAVVTFNFRADRMVMLAKALEYENFDKFDRVRVPKIHYAGMLQYDGELKLPSKYLVSPPEIDRTSGEYLVRNGIRTFACRCVAVAYLLVPLFSIFAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="7974" e_stop="7814"/>
            <exon e_start="7194" e_stop="6697"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="7974" e_stop="7814" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7813" i_stop="7195" i_length="619"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7194" e_stop="6697" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7974" stop="7814"/>
              <exon start="7194" stop="6734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7931" stop="7814"/>
              <exon start="7194" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7912" stop="7814"/>
              <exon start="7194" stop="6697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7912" stop="7814"/>
              <exon start="7194" stop="6697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7888" stop="7814"/>
              <exon start="7194" stop="6736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7863" stop="7814"/>
              <exon start="7194" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299673" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7843" stop="7814"/>
              <exon start="7194" stop="6706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7194" stop="6742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714366" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT : GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTATATTTCTGTATCTGTCAGAGAAATAGTATGGTCCAGTTGAAGTT</gDNA_template>
            <first_frame> C  R  *  S  L  M  L  L  S  K  W  V  E  F  S  L  L  L  L  T  M  E  M  L  K  I  W  L  R  E  T  R  R  E  S  H  Y  L  T  K  M  E  T  F  R  F  S  L  L  T  L  S  N  L :   F  L  L  Q  L  V  V  L  D  L  Y  L  V  *  D  S  A  Q  I  S  P  P  V  D  L  L  M  L  L  Q  P  L  *  I  C  T  D  T  R  R  L  A  I  T  S  Q  P  *  S  K  L  W  T  T  R  *  S  H  R  P  *  G  *  S  F  G  A  R  R  K  R  *  *  P  F  Y  T  L  F  I  *  I  R  H  F  *  A  Y  I  N  R  G  *  H  S  T  T  W  P  V  M  M  L  *  W  K  S  V  I  Y  Y  C  S  F  *  T  L  L  S  F  K  A  *  L  R  V  F  V  F  W  *  T  R  I  L  N  L  S  L  F  V  A  E  I  Y  *  L  F  D  A  L  Y  F  C  I  C  Q  R  N  S  M  V  Q  L  K   </first_frame>
            <second_frame>  A  D  D  P  *  C  Y  *  A  S  G  W  N  F  P  C  Y  C  *  P  W  K  C  *  R  Y  G  *  E  K  Q  E  G  R  A  I  T  *  Q  K  W  K  H  S  D  S  H  F  S  H  S  R  T   : C  S  Y  C  N  W  W  S  W  T  C  T  W  C  E  I  P  H  R  S  P  H  R  W  T  C  *  C  C  F  N  L  Y  E  S  A  R  I  R  G  A  *  R  L  R  A  N  L  D  R  S  C  G  Q  L  D  N  L  I  D  L  R  V  E  V  L  A  Q  E  E  S  D  N  D  H  S  T  L  C  L  F  E  *  D  I  F  E  L  I  S  T  E  V  D  I  L  P  R  G  L  *  *  C  Y  D  G  R  V  *  Y  T  T  V  H  F  K  P  C  C  L  S  R  H  N  F  E  F  L  F  F  G  E  Q  E  F  L  I  F  H  Y  L  W  Q  K  Y  I  S  C  L  M  L  Y  I  S  V  S  V  R  E  I  V  W  S  S  *  S  </second_frame>
            <third_frame>   Q  M  I  L  D  A  I  E  Q  V  G  G  I  F  L  V  T  A  D  H  G  N  A  E  D  M  V  K  R  N  K  K  G  E  P  L  L  D  K  N  G  N  I  Q  I  L  T  S  H  T  L  E  P  :  V  P  I  A  I  G  G  P  G  L  V  P  G  V  R  F  R  T  D  L  P  T  G  G  L  A  N  V  A  S  T  F  M  N  L  H  G  Y  E  A  P  S  D  Y  E  P  T  L  I  E  V  V  D  N  *  I  I  S  *  T  L  G  L  K  F  W  R  K  K  K  A  I  M  T  I  L  H  F  V  Y  L  N  K  T  F  L  S  L  Y  Q  Q  R  L  T  F  Y  H  V  A  C  N  D  A  M  M  E  E  C  D  I  L  L  F  I  L  N  P  V  V  F  Q  G  I  T  S  S  F  C  F  L  V  N  K  N  S  *  S  F  T  I  C  G  R  N  I  L  V  V  *  C  S  I  F  L  Y  L  S  E  K  *  Y  G  P  V  E  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7972" stop="7814"/>
                    <exon start="7194" stop="7030"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMILDAIEQVGGIFLVTADHGNAEDMVKRNKKGEPLLDKNGNIQILTSHTLEPVPIAIGGPGLVPGVRFRTDLPTGGLANVASTFMNLHGYEAPSDYEPTLIEVVDN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7017" stop="6787"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLGLKFWRKKKAIMTILHFVYLNKTFLSLYQQRLTFYHVACNDAMMEECDILLFILNPVVFQGITSSFCFLVNKNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="15042" PGL_stop="15841"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15042" e_stop="15841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="15042" e_stop="15841" e_length="800"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15042" stop="15594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15110" stop="15841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379565" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATCTAATTAATAAATATATTAGTTATACACTATTAGCAATACACAGGCTATTATAAATGTACATTGATAAGCATGAGTAGTTATAGAACGATTTTTAATACATCAAATTAAATATTAGAAAAAAGTAATTTTAACATAACTAAATTCAATATTATTAATATATACTCTATCAAACGGTCTCATAATTTCCTAATTAACATACAACTTTTTCTTTTTTTCACCACATGCATTAGAAACAAACTCCAACACGTTTGATACCACTTGTTGAACCCCATTAGCACATGTTGTATCCACAACAAGTCTTGGAACCTCCACCCCAACATCATAATCCCAACACCCTTCATACCCTTCCAACAACTTCTCCATTTCTTGCCACGTGGATGGCTTATGCCAGCTTGAGCCATATTCCACCAGCTCACCCCTCAGCTCGAGCCGCCTACGCCACTTGGCTTGATCCCTCGGCTTGCACTCCACTACAACAACCTGAGCCCCACTATGATTCGCGATCTCAATGATCCGGTCAAGGTGAGCTCGACGTGAGAGTGGTGAGTCGATCACCACGCTCAGACCTAAGTCTAGCTGAGCGGAGGCGACTCGCCACATGGCATCGTATGATAGGTCATTGATGAGTTTTGTGGCTTTAGTGATTTGTTGAAGTGGTTTAGTGCAATCTTTGAAGTGATCTTTGTCTATAAGAGGACATTTTAGGGTTTTAGCTATGGATTGTGCAAGTGTGCTCTTACCTGTCCCTGGATGGCCTTTCATAGCCAAAATCATTGGCCTTTCTCCATATTTTC</gDNA_template>
            <first_frame> K  I  *  L  I  N  I  L  V  I  H  Y  *  Q  Y  T  G  Y  Y  K  C  T  L  I  S  M  S  S  Y  R  T  I  F  N  T  S  N  *  I  L  E  K  S  N  F  N  I  T  K  F  N  I  I  N  I  Y  S  I  K  R  S  H  N  F  L  I  N  I  Q  L  F  L  F  F  T  T  C  I  R  N  K  L  Q  H  V  *  Y  H  L  L  N  P  I  S  T  C  C  I  H  N  K  S  W  N  L  H  P  N  I  I  I  P  T  P  F  I  P  F  Q  Q  L  L  H  F  L  P  R  G  W  L  M  P  A  *  A  I  F  H  Q  L  T  P  Q  L  E  P  P  T  P  L  G  L  I  P  R  L  A  L  H  Y  N  N  L  S  P  T  M  I  R  D  L  N  D  P  V  K  V  S  S  T  *  E  W  *  V  D  H  H  A  Q  T  *  V  *  L  S  G  G  D  S  P  H  G  I  V  *  *  V  I  D  E  F  C  G  F  S  D  L  L  K  W  F  S  A  I  F  E  V  I  F  V  Y  K  R  T  F  *  G  F  S  Y  G  L  C  K  C  A  L  T  C  P  W  M  A  F  H  S  Q  N  H  W  P  F  S  I  F   </first_frame>
            <second_frame>  K  S  N  *  *  I  Y  *  L  Y  T  I  S  N  T  Q  A  I  I  N  V  H  *  *  A  *  V  V  I  E  R  F  L  I  H  Q  I  K  Y  *  K  K  V  I  L  T  *  L  N  S  I  L  L  I  Y  T  L  S  N  G  L  I  I  S  *  L  T  Y  N  F  F  F  F  S  P  H  A  L  E  T  N  S  N  T  F  D  T  T  C  *  T  P  L  A  H  V  V  S  T  T  S  L  G  T  S  T  P  T  S  *  S  Q  H  P  S  Y  P  S  N  N  F  S  I  S  C  H  V  D  G  L  C  Q  L  E  P  Y  S  T  S  S  P  L  S  S  S  R  L  R  H  L  A  *  S  L  G  L  H  S  T  T  T  T  *  A  P  L  *  F  A  I  S  M  I  R  S  R  *  A  R  R  E  S  G  E  S  I  T  T  L  R  P  K  S  S  *  A  E  A  T  R  H  M  A  S  Y  D  R  S  L  M  S  F  V  A  L  V  I  C  *  S  G  L  V  Q  S  L  K  *  S  L  S  I  R  G  H  F  R  V  L  A  M  D  C  A  S  V  L  L  P  V  P  G  W  P  F  I  A  K  I  I  G  L  S  P  Y  F  </second_frame>
            <third_frame>   N  L  I  N  K  Y  I  S  Y  T  L  L  A  I  H  R  L  L  *  M  Y  I  D  K  H  E  *  L  *  N  D  F  *  Y  I  K  L  N  I  R  K  K  *  F  *  H  N  *  I  Q  Y  Y  *  Y  I  L  Y  Q  T  V  S  *  F  P  N  *  H  T  T  F  S  F  F  H  H  M  H  *  K  Q  T  P  T  R  L  I  P  L  V  E  P  H  *  H  M  L  Y  P  Q  Q  V  L  E  P  P  P  Q  H  H  N  P  N  T  L  H  T  L  P  T  T  S  P  F  L  A  T  W  M  A  Y  A  S  L  S  H  I  P  P  A  H  P  S  A  R  A  A  Y  A  T  W  L  D  P  S  A  C  T  P  L  Q  Q  P  E  P  H  Y  D  S  R  S  Q  *  S  G  Q  G  E  L  D  V  R  V  V  S  R  S  P  R  S  D  L  S  L  A  E  R  R  R  L  A  T  W  H  R  M  I  G  H  *  *  V  L  W  L  *  *  F  V  E  V  V  *  C  N  L  *  S  D  L  C  L  *  E  D  I  L  G  F  *  L  W  I  V  Q  V  C  S  Y  L  S  L  D  G  L  S  *  P  K  S  L  A  F  L  H  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15323" stop="15559"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HMLYPQQVLEPPPQHHNPNTLHTLPTTSPFLATWMAYASLSHIPPAHPSARAAYATWLDPSACTPLQQPEPHYDSRSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="15856" PGL_stop="15115"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15856" e_stop="15115"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="15856" e_stop="15115" e_length="742"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15856" stop="15421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15855" stop="15121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15855" stop="15362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15771" stop="15115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15741" stop="15116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212029" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAAATGGACAATGGAAAATATGGAGAAAGGCCAATGATTTTGGCTATGAAAGGCCATCCAGGGACAGGTAAGAGCACACTTGCACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGTTGGGGTGGAGGTTCCAAGACTTGTTGTGGATACAACATGTGCTAATGGGGTTCAACAAGTGGTATCAAACGTGTTGGAGTTTGTTTCTAATGCATGTGGTGAAAAAAAGAAAAAGTTGTATGTTAATTAGGAAATTATGAGACCGTTTGATAGAGTATATATTAATAATATTGAATTTAGTTATGTTAAAATTACTTTTTTCTAATATTTAATTTGATGTATTAAAAATCGTTCTATAACTACTCATGC</gDNA_template>
            <first_frame> I  K  W  T  M  E  N  M  E  K  G  Q  *  F  W  L  *  K  A  I  Q  G  Q  V  R  A  H  L  H  N  P  *  L  K  P  *  N  V  L  L  *  T  K  I  T  S  K  I  A  L  N  H  F  N  K  S  L  K  P  Q  N  S  S  M  T  Y  H  T  M  P  C  G  E  S  P  P  L  S  *  T  *  V  *  A  W  *  S  T  H  H  S  H  V  E  L  T  L  T  G  S  L  R  S  R  I  I  V  G  L  R  L  L  *  W  S  A  S  R  G  I  K  P  S  G  V  G  G  S  S  *  G  V  S  W  W  N  M  A  Q  A  G  I  S  H  P  R  G  K  K  W  R  S  C  W  K  G  M  K  G  V  G  I  M  M  L  G  W  R  F  Q  D  L  L  W  I  Q  H  V  L  M  G  F  N  K  W  Y  Q  T  C  W  S  L  F  L  M  H  V  V  K  K  R  K  S  C  M  L  I  R  K  L  *  D  R  L  I  E  Y  I  L  I  I  L  N  L  V  M  L  K  L  L  F  S  N  I  *  F  D  V  L  K  I  V  L  *  L  L  M  </first_frame>
            <second_frame>  S  N  G  Q  W  K  I  W  R  K  A  N  D  F  G  Y  E  R  P  S  R  D  R  *  E  H  T  C  T  I  H  S  *  N  P  K  M  S  S  Y  R  Q  R  S  L  Q  R  L  H  *  T  T  S  T  N  H  *  S  H  K  T  H  Q  *  P  I  I  R  C  H  V  A  S  R  L  R  S  A  R  L  R  S  E  R  G  D  R  L  T  T  L  T  S  S  S  P  *  P  D  H  *  D  R  E  S  *  W  G  S  G  C  C  S  G  V  Q  A  E  G  S  S  Q  V  A  *  A  A  R  A  E  G  *  A  G  G  I  W  L  K  L  A  *  A  I  H  V  A  R  N  G  E  V  V  G  R  V  *  R  V  L  G  L  *  C  W  G  G  G  S  K  T  C  C  G  Y  N  M  C  *  W  G  S  T  S  G  I  K  R  V  G  V  C  F  *  C  M  W  *  K  K  E  K  V  V  C  *  L  G  N  Y  E  T  V  *  *  S  I  Y  *  *  Y  *  I  *  L  C  *  N  Y  F  F  L  I  F  N  L  M  Y  *  K  S  F  Y  N  Y  S  C </second_frame>
            <third_frame>   Q  M  D  N  G  K  Y  G  E  R  P  M  I  L  A  M  K  G  H  P  G  T  G  K  S  T  L  A  Q  S  I  A  K  T  L  K  C  P  L  I  D  K  D  H  F  K  D  C  T  K  P  L  Q  Q  I  T  K  A  T  K  L  I  N  D  L  S  Y  D  A  M  W  R  V  A  S  A  Q  L  D  L  G  L  S  V  V  I  D  S  P  L  S  R  R  A  H  L  D  R  I  I  E  I  A  N  H  S  G  A  Q  V  V  V  V  E  C  K  P  R  D  Q  A  K  W  R  R  R  L  E  L  R  G  E  L  V  E  Y  G  S  S  W  H  K  P  S  T  W  Q  E  M  E  K  L  L  E  G  Y  E  G  C  W  D  Y  D  V  G  V  E  V  P  R  L  V  V  D  T  T  C  A  N  G  V  Q  Q  V  V  S  N  V  L  E  F  V  S  N  A  C  G  E  K  K  K  K  L  Y  V  N  *  E  I  M  R  P  F  D  R  V  Y  I  N  N  I  E  F  S  Y  V  K  I  T  F  F  *  Y  L  I  *  C  I  K  N  R  S  I  T  T  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15854" stop="15234"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMDNGKYGERPMILAMKGHPGTGKSTLAQSIAKTLKCPLIDKDHFKDCTKPLQQITKATKLINDLSYDAMWRVASAQLDLGLSVVIDSPLSRRAHLDRIIEIANHSGAQVVVVECKPRDQAKWRRRLELRGELVEYGSSWHKPSTWQEMEKLLEGYEGCWDYDVGVEVPRLVVDTTCANGVQQVVSNVLEFVSNACGEKKKKLYVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="26461" PGL_stop="25770"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26461" e_stop="26286"/>
            <exon e_start="26207" e_stop="25770"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.955"/>
          <exon-only e_score="0.899"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="26461" e_stop="26286" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26285" i_stop="26208" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="0.899">
            <gDNA_exon_boundary e_start="26207" e_stop="25770" e_length="438"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26461" stop="26286"/>
              <exon start="26207" stop="25862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26006" stop="25770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCAGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAG : GATAGAATATGGATCGGGTGTCACGTTTCGACACCAGGATAGAATATGGATCAGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAAGATAATGAATCTTGAAAGATGTTAATATATTCAATCTAATGAACCGAAATCCCAAATGAGCATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTGTACTGACCCCCTACTTTTATGGTTTCTTTCCTTGTTATTTGTG</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  S  E  I  R  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R :   I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  R  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  K  I  M  N  L  E  R  C  *  Y  I  Q  S  N  E  P  K  S  Q  M  S  M  M  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  V  L  T  P  Y  F  Y  G  F  F  P  C  Y  L   </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  *  M  K  V  V  R  L  G  D  Q  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P   : G  *  N  M  D  R  V  S  R  F  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  R  *  *  I  L  K  D  V  N  I  F  N  L  M  N  R  N  P  K  *  A  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  L  Y  *  P  P  T  F  M  V  S  F  L  V  I  C  </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  *  K  *  *  D  *  G  I  R  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  :  D  R  I  W  I  G  C  H  V  S  T  P  G  *  N  M  D  Q  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  E  I  P  N  E  H  D  E  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  C  T  D  P  L  L  L  W  F  L  S  L  L  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0044H04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="28876" PGL_stop="28474"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28876" e_stop="28474"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="28876" e_stop="28474" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28876" stop="28474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220638" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28786" stop="28474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220527" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTATATATGGCACAGAGGCTCAGGTGAACTTGTTGCGACACTGGCTGGACATTCAGGGGCGGTGAACTGTGTTAGCTGGAACCCAACAAATCCTCATATGCTGGCATCTGCGAGTGATGATGGTACAATTCGTATATGGGGCGATAATCGAGTAAACACAAAGCAACATGACACTGCTAATGGTGTGAACTACTGCAATGGGCGAAGTTGAACTCTGAGATGCAAAAGGGCAGCGTGTAACGTTACAAATATCTTTCATCGCTATCACTGGTTTCTGTGTATATTCTGTATGTTCATGTCGAATCAACATTTATGACAAACAAGAATGTGAAATTTGCATTCAGTCCATTAATAAATCGTGTACTCTTTCCTCCATATTTTAGATTTTCTTTTCCATTTAA</gDNA_template>
            <first_frame> V  Y  I  W  H  R  G  S  G  E  L  V  A  T  L  A  G  H  S  G  A  V  N  C  V  S  W  N  P  T  N  P  H  M  L  A  S  A  S  D  D  G  T  I  R  I  W  G  D  N  R  V  N  T  K  Q  H  D  T  A  N  G  V  N  Y  C  N  G  R  S  *  T  L  R  C  K  R  A  A  C  N  V  T  N  I  F  H  R  Y  H  W  F  L  C  I  F  C  M  F  M  S  N  Q  H  L  *  Q  T  R  M  *  N  L  H  S  V  H  *  *  I  V  Y  S  F  L  H  I  L  D  F  L  F  H  L  </first_frame>
            <second_frame>  F  I  Y  G  T  E  A  Q  V  N  L  L  R  H  W  L  D  I  Q  G  R  *  T  V  L  A  G  T  Q  Q  I  L  I  C  W  H  L  R  V  M  M  V  Q  F  V  Y  G  A  I  I  E  *  T  Q  S  N  M  T  L  L  M  V  *  T  T  A  M  G  E  V  E  L  *  D  A  K  G  Q  R  V  T  L  Q  I  S  F  I  A  I  T  G  F  C  V  Y  S  V  C  S  C  R  I  N  I  Y  D  K  Q  E  C  E  I  C  I  Q  S  I  N  K  S  C  T  L  S  S  I  F  *  I  F  F  S  I  * </second_frame>
            <third_frame>   L  Y  M  A  Q  R  L  R  *  T  C  C  D  T  G  W  T  F  R  G  G  E  L  C  *  L  E  P  N  K  S  S  Y  A  G  I  C  E  *  *  W  Y  N  S  Y  M  G  R  *  S  S  K  H  K  A  T  *  H  C  *  W  C  E  L  L  Q  W  A  K  L  N  S  E  M  Q  K  G  S  V  *  R  Y  K  Y  L  S  S  L  S  L  V  S  V  Y  I  L  Y  V  H  V  E  S  T  F  M  T  N  K  N  V  K  F  A  F  S  P  L  I  N  R  V  L  F  P  P  Y  F  R  F  S  F  P  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28876" stop="28664"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYIWHRGSGELVATLAGHSGAVNCVSWNPTNPHMLASASDDGTIRIWGDNRVNTKQHDTANGVNYCNGRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="41638" PGL_stop="30355"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41638" e_stop="41404"/>
            <exon e_start="39463" e_stop="38591"/>
            <exon e_start="34656" e_stop="34555"/>
            <exon e_start="30900" e_stop="30355"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.016" acc_prob="0.991" e_score="0.983"/>
          <exon-intron don_prob="0.974" acc_prob="0.713" e_score="0.989"/>
          <exon-intron don_prob="0.992" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="41638" e_stop="41404" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.016" acc_prob="0.991">
            <gDNA_intron_boundary i_start="41403" i_stop="39464" i_length="1940"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="39463" e_stop="38591" e_length="873"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.713">
            <gDNA_intron_boundary i_start="38590" i_stop="34657" i_length="3934"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34656" e_stop="34555" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.969">
            <gDNA_intron_boundary i_start="34554" i_stop="30901" i_length="3654"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="30900" e_stop="30355" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41638" stop="41404"/>
              <exon start="39463" stop="38965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41637" stop="41404"/>
              <exon start="39463" stop="38986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41631" stop="41404"/>
              <exon start="39463" stop="38808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38966" stop="38591"/>
              <exon start="34656" stop="34555"/>
              <exon start="30900" stop="30686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38744" stop="38591"/>
              <exon start="34656" stop="34555"/>
              <exon start="30900" stop="30355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711021" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCAAACAACTCTTTCCTCCCATTTCTCTATTCACAAGTTCTCCATTACACAAATACTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGT : GATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATGAGGTTGTTGGTACAAAAGGAGTTGTCAAGAAAGTTGAATTTGTTCGGATTATAACTGAGGCATTAGATTCTCTTGGTTACAAAAAGACTCGGGCCTTACTAGAGGAAGAGTCAGGGATACCCTTGCACACTTCCGTCGTAAATTTGTTTATGCAGCAAATTCTTGATGGTAAATGGGATGAAAGTTTAAACACATTGCGAAATATTGGTCTGGTGGATGAAAAAATTGTAAAGTTGGCATCTTTTGTGATATTGGAGCAGAAGTTTTTTGAATTGTTGCACAAGGAAAAAGTTATGGATGCTCTGAGGACACTGAGGGGCGAGATCTCACCTCTTTGCATAAACAATGATAGAGTCCATCAGCTTTCGTTTTTCATTATATCACCTTCTCAGCAGGTTCTTACTGGGGTATCAGGTCAAGGCACAGCGAGAGTAAAGTCACGTACAGAGCTACTAGAGGAATTGCAAAGATTGCTTCCCCCAACAGTTATGGTTCCAGAAAAGAGATTGGTACATCTTGTTGAACAAGCTCTTGACTTGCAACTAGATGCTTGTAGATTTCACAACTCTGTGGTTGGTGAAATGTCACTGCTCAGTGATCATCACTGCGGAAGAGATCATATTCCATCTCTAACAATGCAG : ATATTACATGAACATAAAGATGAAGTCTGGTTCTTGCAGTTTTCCCATAATGGAAAGTACTTAGCCTCGTCATCTGCCGATTTTGCCGTAATTATATGGGAG : GTCAAATTGGATGGCAGTGTCTGCATGAAACACAGACTTTTGGGTCACGAGACATATGTCTCGTATATATCATGGAGTCCTGATGACCATCAGCTTCTCACTTGTGGTGAAGAGGAAGCTGTCATTCGGTGGGATGTCGAGTCTGGTGTACGTATACACACTTATGAGAAAAAATTTGTTAAGTTTATCTCATGCGGCTGGGCTCCTGATGGAAAAAGGATATTCTGTGGTGTAACTGACAAAAGCATTAGCATGTGGGATTTGGAAGGGAAAGAGCTTGAGTGTTGGAAAGGCCACAGGGCTACTAGAATATCGGACTTGGGGATAACAAGTGATGGGAAGCATGTTATCTCTGTTTGTAAAGAAAATATGATAGTATTAGTTGGATGGGAATCAAAAGTAGAGAGAGTAATTCAGGAGGATCAGGCAATAACCTCATTTGTATTGTCCATGGACAGTAAGTATGTGTTGGTTAGTCTTTCAAACCAAGAAATTCATCTCTGGAATATCGAGGGAACTGTAAAACTTGTAGCCAAATATAAGGGG</gDNA_template>
            <first_frame> C  K  Q  L  F  P  P  I  S  L  F  T  S  S  P  L  H  K  Y  S  N  L  S  T  R  F  L  L  S  T  I  N  H  I  P  F  L  A  F  N  R  L  L  V  Y  P  P  N  L  L  V  L  A  Y  R  Q  T  R  G  N  K  R  I  Q  F  G  I  K  P  F  A  I  C  W  F  F  N  Q   : *  F  R  P  T  I  P  T  F  Q  F  C  L  P  P  A  V  I  Y  G  L  T  R  L  F  H  G  S  *  G  R  *  *  T  T  I  K  T  C  E  G  I  L  Q  S  I  G  R  Y  F  *  Q  D  I  C  *  R  S  C  K  L  F  I  G  *  L  D  G  S  T  P  D  S  S  R  G  R  *  G  C  W  Y  K  R  S  C  Q  E  S  *  I  C  S  D  Y  N  *  G  I  R  F  S  W  L  Q  K  D  S  G  L  T  R  G  R  V  R  D  T  L  A  H  F  R  R  K  F  V  Y  A  A  N  S  *  W  *  M  G  *  K  F  K  H  I  A  K  Y  W  S  G  G  *  K  N  C  K  V  G  I  F  C  D  I  G  A  E  V  F  *  I  V  A  Q  G  K  S  Y  G  C  S  E  D  T  E  G  R  D  L  T  S  L  H  K  Q  *  *  S  P  S  A  F  V  F  H  Y  I  T  F  S  A  G  S  Y  W  G  I  R  S  R  H  S  E  S  K  V  T  Y  R  A  T  R  G  I  A  K  I  A  S  P  N  S  Y  G  S  R  K  E  I  G  T  S  C  *  T  S  S  *  L  A  T  R  C  L  *  I  S  Q  L  C  G  W  *  N  V  T  A  Q  *  S  S  L  R  K  R  S  Y  S  I  S  N  N  A   : D  I  T  *  T  *  R  *  S  L  V  L  A  V  F  P  *  W  K  V  L  S  L  V  I  C  R  F  C  R  N  Y  M  G   : G  Q  I  G  W  Q  C  L  H  E  T  Q  T  F  G  S  R  D  I  C  L  V  Y  I  M  E  S  *  *  P  S  A  S  H  L  W  *  R  G  S  C  H  S  V  G  C  R  V  W  C  T  Y  T  H  L  *  E  K  I  C  *  V  Y  L  M  R  L  G  S  *  W  K  K  D  I  L  W  C  N  *  Q  K  H  *  H  V  G  F  G  R  E  R  A  *  V  L  E  R  P  Q  G  Y  *  N  I  G  L  G  D  N  K  *  W  E  A  C  Y  L  C  L  *  R  K  Y  D  S  I  S  W  M  G  I  K  S  R  E  S  N  S  G  G  S  G  N  N  L  I  C  I  V  H  G  Q  *  V  C  V  G  *  S  F  K  P  R  N  S  S  L  E  Y  R  G  N  C  K  T  C  S  Q  I  *  G  </first_frame>
            <second_frame>  A  N  N  S  F  L  P  F  L  Y  S  Q  V  L  H  Y  T  N  T  Q  I  S  L  Q  D  S  Y  S  Q  Q  S  I  I  Y  L  F  *  L  S  I  D  C  L  F  T  H  L  I  Y  *  S  *  L  T  D  K  R  E  G  I  K  E  Y  N  L  G  *  N  H  L  R  F  A  G  F  S  I  S  :  D  L  G  L  L  F  Q  L  F  S  F  V  F  L  L  L  L  Y  M  G  *  R  V  C  F  M  G  A  E  D  D  D  E  P  P  S  K  R  V  K  V  S  S  S  Q  L  V  D  I  S  D  R  T  F  V  R  D  P  V  S  C  S  L  G  D  S  M  A  R  P  L  T  L  Q  G  D  D  E  V  V  G  T  K  G  V  V  K  K  V  E  F  V  R  I  I  T  E  A  L  D  S  L  G  Y  K  K  T  R  A  L  L  E  E  E  S  G  I  P  L  H  T  S  V  V  N  L  F  M  Q  Q  I  L  D  G  K  W  D  E  S  L  N  T  L  R  N  I  G  L  V  D  E  K  I  V  K  L  A  S  F  V  I  L  E  Q  K  F  F  E  L  L  H  K  E  K  V  M  D  A  L  R  T  L  R  G  E  I  S  P  L  C  I  N  N  D  R  V  H  Q  L  S  F  F  I  I  S  P  S  Q  Q  V  L  T  G  V  S  G  Q  G  T  A  R  V  K  S  R  T  E  L  L  E  E  L  Q  R  L  L  P  P  T  V  M  V  P  E  K  R  L  V  H  L  V  E  Q  A  L  D  L  Q  L  D  A  C  R  F  H  N  S  V  V  G  E  M  S  L  L  S  D  H  H  C  G  R  D  H  I  P  S  L  T  M  Q  :  I  L  H  E  H  K  D  E  V  W  F  L  Q  F  S  H  N  G  K  Y  L  A  S  S  S  A  D  F  A  V  I  I  W  E  :  V  K  L  D  G  S  V  C  M  K  H  R  L  L  G  H  E  T  Y  V  S  Y  I  S  W  S  P  D  D  H  Q  L  L  T  C  G  E  E  E  A  V  I  R  W  D  V  E  S  G  V  R  I  H  T  Y  E  K  K  F  V  K  F  I  S  C  G  W  A  P  D  G  K  R  I  F  C  G  V  T  D  K  S  I  S  M  W  D  L  E  G  K  E  L  E  C  W  K  G  H  R  A  T  R  I  S  D  L  G  I  T  S  D  G  K  H  V  I  S  V  C  K  E  N  M  I  V  L  V  G  W  E  S  K  V  E  R  V  I  Q  E  D  Q  A  I  T  S  F  V  L  S  M  D  S  K  Y  V  L  V  S  L  S  N  Q  E  I  H  L  W  N  I  E  G  T  V  K  L  V  A  K  Y  K  G </second_frame>
            <third_frame>   Q  T  T  L  S  S  H  F  S  I  H  K  F  S  I  T  Q  I  L  K  S  L  Y  K  I  L  T  L  N  N  Q  S  Y  T  F  F  S  F  Q  S  T  A  C  L  P  T  *  S  T  S  L  S  L  P  T  N  E  R  E  *  K  N  T  I  W  D  K  T  I  C  D  L  L  V  F  Q  S  V :   I  *  A  Y  Y  S  N  F  S  V  L  S  S  S  C  C  Y  I  W  A  D  A  F  V  S  W  E  L  R  T  M  M  N  H  H  Q  N  V  *  R  Y  P  P  V  N  W  *  I  F  L  T  G  H  L  L  E  I  L  *  V  V  H  W  V  T  R  W  L  D  P  *  L  F  K  G  T  M  R  L  L  V  Q  K  E  L  S  R  K  L  N  L  F  G  L  *  L  R  H  *  I  L  L  V  T  K  R  L  G  P  Y  *  R  K  S  Q  G  Y  P  C  T  L  P  S  *  I  C  L  C  S  K  F  L  M  V  N  G  M  K  V  *  T  H  C  E  I  L  V  W  W  M  K  K  L  *  S  W  H  L  L  *  Y  W  S  R  S  F  L  N  C  C  T  R  K  K  L  W  M  L  *  G  H  *  G  A  R  S  H  L  F  A  *  T  M  I  E  S  I  S  F  R  F  S  L  Y  H  L  L  S  R  F  L  L  G  Y  Q  V  K  A  Q  R  E  *  S  H  V  Q  S  Y  *  R  N  C  K  D  C  F  P  Q  Q  L  W  F  Q  K  R  D  W  Y  I  L  L  N  K  L  L  T  C  N  *  M  L  V  D  F  T  T  L  W  L  V  K  C  H  C  S  V  I  I  T  A  E  E  I  I  F  H  L  *  Q  C  R :   Y  Y  M  N  I  K  M  K  S  G  S  C  S  F  P  I  M  E  S  T  *  P  R  H  L  P  I  L  P  *  L  Y  G  R :   S  N  W  M  A  V  S  A  *  N  T  D  F  W  V  T  R  H  M  S  R  I  Y  H  G  V  L  M  T  I  S  F  S  L  V  V  K  R  K  L  S  F  G  G  M  S  S  L  V  Y  V  Y  T  L  M  R  K  N  L  L  S  L  S  H  A  A  G  L  L  M  E  K  G  Y  S  V  V  *  L  T  K  A  L  A  C  G  I  W  K  G  K  S  L  S  V  G  K  A  T  G  L  L  E  Y  R  T  W  G  *  Q  V  M  G  S  M  L  S  L  F  V  K  K  I  *  *  Y  *  L  D  G  N  Q  K  *  R  E  *  F  R  R  I  R  Q  *  P  H  L  Y  C  P  W  T  V  S  M  C  W  L  V  F  Q  T  K  K  F  I  S  G  I  S  R  E  L  *  N  L  *  P  N  I  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39400" stop="38591"/>
                    <exon start="34656" stop="34555"/>
                    <exon start="30900" stop="30355"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1458</number_coding_nucleotides>
                  <number_encoded_amino_acids>486</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVCFMGAEDDDEPPSKRVKVSSSQLVDISDRTFVRDPVSCSLGDSMARPLTLQGDDEVVGTKGVVKKVEFVRIITEALDSLGYKKTRALLEEESGIPLHTSVVNLFMQQILDGKWDESLNTLRNIGLVDEKIVKLASFVILEQKFFELLHKEKVMDALRTLRGEISPLCINNDRVHQLSFFIISPSQQVLTGVSGQGTARVKSRTELLEELQRLLPPTVMVPEKRLVHLVEQALDLQLDACRFHNSVVGEMSLLSDHHCGRDHIPSLTMQILHEHKDEVWFLQFSHNGKYLASSSADFAVIIWEVKLDGSVCMKHRLLGHETYVSYISWSPDDHQLLTCGEEEAVIRWDVESGVRIHTYEKKFVKFISCGWAPDGKRIFCGVTDKSISMWDLEGKELECWKGHRATRISDLGITSDGKHVISVCKENMIVLVGWESKVERVIQEDQAITSFVLSMDSKYVLVSLSNQEIHLWNIEGTVKLVAKYKG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41638" stop="41404"/>
                    <exon start="39463" stop="39462"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CKQLFPPISLFTSSPLHKYSNLSTRFLLSTINHIPFLAFNRLLVYPPNLLVLAYRQTRGNKRIQFGIKPFAICWFFNQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41632" e_stop="41323"/>
            <exon e_start="39463" e_stop="39232"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="0.987"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="41632" e_stop="41323" e_length="310"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="41322" i_stop="39464" i_length="1859"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39463" e_stop="39232" e_length="232"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41632" stop="41323"/>
              <exon start="39463" stop="39232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331285" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACTCTTTCCTCCCATTTCTCTATTCACAAGTTCTCCATTACACAAATACTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGTGTATGTATCCATTTTGATCTGAATCTTCAAATTGCTTTATGGGTATTGCAGATTCTTTTCTAATCTTTTGTTGATTTTCTG : GATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATG</gDNA_template>
            <first_frame> Q  L  F  P  P  I  S  L  F  T  S  S  P  L  H  K  Y  S  N  L  S  T  R  F  L  L  S  T  I  N  H  I  P  F  L  A  F  N  R  L  L  V  Y  P  P  N  L  L  V  L  A  Y  R  Q  T  R  G  N  K  R  I  Q  F  G  I  K  P  F  A  I  C  W  F  F  N  Q  C  M  Y  P  F  *  S  E  S  S  N  C  F  M  G  I  A  D  S  F  L  I  F  C  *  F  S   : G  F  R  P  T  I  P  T  F  Q  F  C  L  P  P  A  V  I  Y  G  L  T  R  L  F  H  G  S  *  G  R  *  *  T  T  I  K  T  C  E  G  I  L  Q  S  I  G  R  Y  F  *  Q  D  I  C  *  R  S  C  K  L  F  I  G  *  L  D  G  S  T  P  D  S  S  R  G  R   </first_frame>
            <second_frame>  N  S  F  L  P  F  L  Y  S  Q  V  L  H  Y  T  N  T  Q  I  S  L  Q  D  S  Y  S  Q  Q  S  I  I  Y  L  F  *  L  S  I  D  C  L  F  T  H  L  I  Y  *  S  *  L  T  D  K  R  E  G  I  K  E  Y  N  L  G  *  N  H  L  R  F  A  G  F  S  I  S  V  C  I  H  F  D  L  N  L  Q  I  A  L  W  V  L  Q  I  L  F  *  S  F  V  D  F  L  :  D  L  G  L  L  F  Q  L  F  S  F  V  F  L  L  L  L  Y  M  G  *  R  V  C  F  M  G  A  E  D  D  D  E  P  P  S  K  R  V  K  V  S  S  S  Q  L  V  D  I  S  D  R  T  F  V  R  D  P  V  S  C  S  L  G  D  S  M  A  R  P  L  T  L  Q  G  D  D  </second_frame>
            <third_frame>   T  L  S  S  H  F  S  I  H  K  F  S  I  T  Q  I  L  K  S  L  Y  K  I  L  T  L  N  N  Q  S  Y  T  F  F  S  F  Q  S  T  A  C  L  P  T  *  S  T  S  L  S  L  P  T  N  E  R  E  *  K  N  T  I  W  D  K  T  I  C  D  L  L  V  F  Q  S  V  Y  V  S  I  L  I  *  I  F  K  L  L  Y  G  Y  C  R  F  F  S  N  L  L  L  I  F  W :   I  *  A  Y  Y  S  N  F  S  V  L  S  S  S  C  C  Y  I  W  A  D  A  F  V  S  W  E  L  R  T  M  M  N  H  H  Q  N  V  *  R  Y  P  P  V  N  W  *  I  F  L  T  G  H  L  L  E  I  L  *  V  V  H  W  V  T  R  W  L  D  P  *  L  F  K  G  T  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41632" stop="41387"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLFPPISLFTSSPLHKYSNLSTRFLLSTINHIPFLAFNRLLVYPPNLLVLAYRQTRGNKRIQFGIKPFAICWFFNQCMYPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 136 chains have been computed
$ 
$ memory statistics:
$ 110768 bytes spliced alignments in total
$ 54 spliced alignments have been stored
$ 2051 bytes was the average size of a spliced alignment
$ 12824 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2137 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 165 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-17 23:25:23
-->
