<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-07 03:39:26"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E395854" ref_strand="+" ref_description="SGN-E395854 [TUS-18-A19]">
      <seq>tttttttttttaataaatatattagttatacactattagcaatacacaggctagtataattgtacattgataagcatgagtagttatagaacgatttttaatacatcaaattaaatattagaaaaaagtaattttaacataactaaattcaatattattaatatatactctatcaaacggtctcataatttcctaattaacatacaactttttctttttttcaccacatgcattagaaacaaactccaacacgtttgataccacttgttgaaccccattagcacatgttgtatccacaacaagtcttggaacctccaccccaacatcataatcccaacacccttcatacccttccaacaacttctccatttcttgccacgtggatggcttatgccagcttgagccatattccaccagctcacccctcagctcgagccgcctacgccacttggcttgatcccgcgggggggggggcactacaacaacctgagccccactatgattcgcgatctcaatgatccggtcaaggtgagctcgacgtgagagtggtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="+" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="2408" stop="3556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2704" g_stop="3256" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="+" ref_id="SGN-E395854" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2704" e_stop="3256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTAATTAATAAATATATTAGTTATACACTATTAGCAATACACAGGCTATTATAAATGTACATTGATAAGCATGAGTAGTTATAGAACGATTTTTAATACATCAAATTAAATATTAGAAAAAAGTAATTTTAACATAACTAAATTCAATATTATTAATATATACTCTATCAAACGGTCTCATAATTTCCTAATTAACATACAACTTTTTCTTTTTTTCACCACATGCATTAGAAACAAACTCCAACACGTTTGATACCACTTGTTGAACCCCATTAGCACATGTTGTATCCACAACAAGTCTTGGAACCTCCACCCCAACATCATAATCCCAACACCCTTCATACCCTTCCAACAACTTCTCCATTTCTTGCCACGTGGATGGCTTATGCCAGCTTGAGCCATATTCCACCAGCTCACCCCTCAGCTCGAGCCGCCTACGCCACTTGGCTTGATCCCTCGGCTTGCACTCCACTACAACAACCTGAGCCCCACTATGATTCGCGATCTCAATGATCCGGTCAAGGTGAGCTCGACGTGAGAGTGGTGAG</genome_strand>
        <mrna_strand>TTTTTTTTTTTAATAAATATATTAGTTATACACTATTAGCAATACACAGGCTAGTATAATTGTACATTGATAAGCATGAGTAGTTATAGAACGATTTTTAATACATCAAATTAAATATTAGAAAAAAGTAATTTTAACATAACTAAATTCAATATTATTAATATATACTCTATCAAACGGTCTCATAATTTCCTAATTAACATACAACTTTTTCTTTTTTTCACCACATGCATTAGAAACAAACTCCAACACGTTTGATACCACTTGTTGAACCCCATTAGCACATGTTGTATCCACAACAAGTCTTGGAACCTCCACCCCAACATCATAATCCCAACACCCTTCATACCCTTCCAACAACTTCTCCATTTCTTGCCACGTGGATGGCTTATGCCAGCTTGAGCCATATTCCACCAGCTCACCCCTCAGCTCGAGCCGCCTACGCCACTTGGCTTGATCCCGCGGGGGGGGGGGCACTACAACAACCTGAGCCCCACTATGATTCGCGATCTCAATGATCCGGTCAAGGTGAGCTCGACGTGAGAGTGGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E379565" ref_strand="+" ref_description="SGN-E379565 [TUS-3-D1]">
      <seq>gataagcatgagtagttctagaacgatttttaatacatcaaattaaatattagaaaaaagtaattttaacataactaaattcaatattattaatatatactctatcaaacggtctcataatttcctaattaacatacaactttttctttttttcaccacatgcattagaaacaaactccaacacgtttgataccacttgttgaaccccattagcacatgttgtatccacaacaagtcttggaacctccaccccaacatcataatcccaacacccttcatacccttccaacaacttctccatttcttgccacgtggatggcttatgccagcttgagccatattccaccagctcacccctcagctcgagccgcctacgccacttggcttgatccctcggcttgcactccactacaacaacctgagccccactatgattcgcgatctcaatgatccggtcaaggtgagctcgacgtgagagtggtgagtcgatcaccacgctcagacctaagtctagctgagcggaggcgactcgccacatggcatcgtatgataggtcattgatgagttttgtggctttagtgatttgttgaagtggtttagtgcaatctttgaagtgatctttgtctataagaggacattttagggttttagctatggattgtgcaagtgtgctcttacctgtccctggatggcctttcatagccaaaatcattggcctttctccatattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="+" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="2472" stop="3803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2772" g_stop="3503" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="+" ref_id="SGN-E379565" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2772" e_stop="3503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAGCATGAGTAGTTATAGAACGATTTTTAATACATCAAATTAAATATTAGAAAAAAGTAATTTTAACATAACTAAATTCAATATTATTAATATATACTCTATCAAACGGTCTCATAATTTCCTAATTAACATACAACTTTTTCTTTTTTTCACCACATGCATTAGAAACAAACTCCAACACGTTTGATACCACTTGTTGAACCCCATTAGCACATGTTGTATCCACAACAAGTCTTGGAACCTCCACCCCAACATCATAATCCCAACACCCTTCATACCCTTCCAACAACTTCTCCATTTCTTGCCACGTGGATGGCTTATGCCAGCTTGAGCCATATTCCACCAGCTCACCCCTCAGCTCGAGCCGCCTACGCCACTTGGCTTGATCCCTCGGCTTGCACTCCACTACAACAACCTGAGCCCCACTATGATTCGCGATCTCAATGATCCGGTCAAGGTGAGCTCGACGTGAGAGTGGTGAGTCGATCACCACGCTCAGACCTAAGTCTAGCTGAGCGGAGGCGACTCGCCACATGGCATCGTATGATAGGTCATTGATGAGTTTTGTGGCTTTAGTGATTTGTTGAAGTGGTTTAGTGCAATCTTTGAAGTGATCTTTGTCTATAAGAGGACATTTTAGGGTTTTAGCTATGGATTGTGCAAGTGTGCTCTTACCTGTCCCTGGATGGCCTTTCATAGCCAAAATCATTGGCCTTTCTCCATATTTTC</genome_strand>
        <mrna_strand>GATAAGCATGAGTAGTTCTAGAACGATTTTTAATACATCAAATTAAATATTAGAAAAAAGTAATTTTAACATAACTAAATTCAATATTATTAATATATACTCTATCAAACGGTCTCATAATTTCCTAATTAACATACAACTTTTTCTTTTTTTCACCACATGCATTAGAAACAAACTCCAACACGTTTGATACCACTTGTTGAACCCCATTAGCACATGTTGTATCCACAACAAGTCTTGGAACCTCCACCCCAACATCATAATCCCAACACCCTTCATACCCTTCCAACAACTTCTCCATTTCTTGCCACGTGGATGGCTTATGCCAGCTTGAGCCATATTCCACCAGCTCACCCCTCAGCTCGAGCCGCCTACGCCACTTGGCTTGATCCCTCGGCTTGCACTCCACTACAACAACCTGAGCCCCACTATGATTCGCGATCTCAATGATCCGGTCAAGGTGAGCTCGACGTGAGAGTGGTGAGTCGATCACCACGCTCAGACCTAAGTCTAGCTGAGCGGAGGCGACTCGCCACATGGCATCGTATGATAGGTCATTGATGAGTTTTGTGGCTTTAGTGATTTGTTGAAGTGGTTTAGTGCAATCTTTGAAGTGATCTTTGTCTATAAGAGGACATTTTAGGGTTTTAGCTATGGATTGTGCAAGTGTGCTCTTACCTGTCCCTGGATGGCCTTTCATAGCCAAAATCATTGGCCTTTCTCCATATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E213945" ref_strand="+" ref_description="SGN-E213945 [cLEC-80-M9]">
      <seq>acaatccatagctaaaaccctaaaatgtcctcttatagacaaagatcacttcaaagattgcactaaaccacttcaacaaatcactaaagccacaaaactcatcaatgacctatcatacgatgccatgtggcgagtcgcctccgctcagctagacttaggtctgagcgtggtgatcgactcaccactctcacgtcgagctcaccttgaccggatcattgagatcgcgaatcatagtggggctcaggttgttgtagtggagtgcaagccgagggatcaagccaagtggcgtaggcggctcgagctgaggggtgagctggtggaatatggctcaagctggcataagccatccacgtggcaagaaatggagaagttgttggaagggtatgaagggtgttgggattatgatgtggggggtgggaagttccaangacttgttgtggatacaacatgtgctaatggggttcaacaagtggtatcaaacgtgnttggagtttgtttctaatgcatgtggtgaaaaaaagaaaaagttgtatgttaattaggaaattatgagaccgtttgatagagtatatattaataatattgaatttagttatgttaaaattacttttttctaatatttaatttgatgtattaaaaatcgttctataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="3733" stop="2487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3433" g_stop="2777" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E213945" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3433" e_stop="2777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGT-TGGGGT-GGAGGTTCCAA-GACTTGTTGTGGATACAACATGTGCTAATGGGGTTCAACAAGTGGTATCAAACGTG-TTGGAGTTTGTTTCTAATGCATGTGGTGAAAAAAAGAAAAAGTTGTATGTTAATTAGGAAATTATGAGACCGTTTGATAGAGTATATATTAATAATATTGAATTTAGTTATGTTAAAATTACTTTTTTCTAATATTTAATTTGATGTATTAAAAATCGTTCTATAACTACTCATGC</genome_strand>
        <mrna_strand>ACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGTGGGGGGTGGGAAGTTCCAANGACTTGTTGTGGATACAACATGTGCTAATGGGGTTCAACAAGTGGTATCAAACGTGNTTGGAGTTTGTTTCTAATGCATGTGGTGAAAAAAAGAAAAAGTTGTATGTTAATTAGGAAATTATGAGACCGTTTGATAGAGTATATATTAATAATATTGAATTTAGTTATGTTAAAATTACTTTTTTCTAATATTTAATTTGATGTATTAAAAATCGTTCTATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E212029" ref_strand="+" ref_description="SGN-E212029 [cLEC-66-F18]">
      <seq>tcttatagacaaagatcacttcaaagattgcactaaaccacttcaacaaatcactaaagccacaaaactcatcaatgacctatcatacgatgccatgtggcgagtcgcctccgctcagctagacttaggtctgagcgtggtgatcgactcaccactctcacgtcgagctcaccttgaccggatcattgagatcgcgaatcatagtggggctcaggttgttgtagtggagtgcaagccgagggatcaagccaagtggcgtaggcggctcgagctgaggggtgagctggtggaatatggctcaagctggcataagccatccacgtggcaagaaatggagaagttgttggaagggtatgaagggtgttgggattatgatgttggggtggaggttccaagacttgttgtggatacaacatgtgctaatggggttcaacaagtggtatcaaacgtgttggagtttgtttctaatgcatgtggtgaaaaaaagaaaaagttgtatgttaattangaaattatgagaccgtttgatagagtatatattaataatattgaatttagttatgttaaaattacttttttctaatatttaatttgatggattaaaaatcgttctataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="3703" stop="2487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3403" g_stop="2778" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E212029" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3403" e_stop="2778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGTTGGGGTGGAGGTTCCAAGACTTGTTGTGGATACAACATGTGCTAATGGGGTTCAACAAGTGGTATCAAACGTGTTGGAGTTTGTTTCTAATGCATGTGGTGAAAAAAAGAAAAAGTTGTATGTTAATTAGGAAATTATGAGACCGTTTGATAGAGTATATATTAATAATATTGAATTTAGTTATGTTAAAATTACTTTTTTCTAATATTTAATTTGATGTATTAAAAATCGTTCTATAACTACTCATG</genome_strand>
        <mrna_strand>TCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGTTGGGGTGGAGGTTCCAAGACTTGTTGTGGATACAACATGTGCTAATGGGGTTCAACAAGTGGTATCAAACGTGTTGGAGTTTGTTTCTAATGCATGTGGTGAAAAAAAGAAAAAGTTGTATGTTAATTANGAAATTATGAGACCGTTTGATAGAGTATATATTAATAATATTGAATTTAGTTATGTTAAAATTACTTTTTTCTAATATTTAATTTGATGGATTAAAAATCGTTCTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E378833" ref_strand="+" ref_description="SGN-E378833 [TUS-3-D1]">
      <seq>tcaaatggacaatggaaaatatggagaaaggccaatgattttggctatgaaaggccatccagggacaggtaagagcacacttgcacaatccatagctaaaaccctaaaatgtcctcttatagacaaagatcacttcaaagattgcactaaaccacttcaacaaatcactaaagccacaaaactcatcaatgacctatcatacgatgccatgtggcgagtcgcctccgctcagctagacttaggtctgagcgtggtgatcgactcaccactctcacgtcgagctcaccttgaccggatcattgagatcgcgaatcatagtggggctcaggttgttgtagtggagtgcaagccgagggatcaagccaagtggcgtaggcggctcgagctgaggggtgagctggtggaatatggctcaagctggcataagccatccacgtggcaagaaatggagaagttgttggaagggtatgaagggtgttgggattatgatgttggggggtggaggttccaagacttgttgtggatacaacatgtgctaatggggttcaacaagtggtatcaaacgtgttggagtttgtttctaatgcatgtggtgaaaaaaagaaaagttgtatgttaattaggaaattatgagaccgtttgatagagtatatattaataatattgaatttagttatgttaaaattacttttttctaatatttaaattgatgtattannaatcgttctataactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="3817" stop="2483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3517" g_stop="2783" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E378833" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3517" e_stop="2783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGGACAATGGAAAATATGGAGAAAGGCCAATGATTTTGGCTATGAAAGGCCATCCAGGGACAGGTAAGAGCACACTTGCACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGTT--GGGGTGGAGGTTCCAAGACTTGTTGTGGATACAACATGTGCTAATGGGGTTCAACAAGTGGTATCAAACGTGTTGGAGTTTGTTTCTAATGCATGTGGTGAAAAAAAGAAAAAGTTGTATGTTAATTAGGAAATTATGAGACCGTTTGATAGAGTATATATTAATAATATTGAATTTAGTTATGTTAAAATTACTTTTTTCTAATATTTAATTTGATGTATTAAAAATCGTTCTATAACTAC</genome_strand>
        <mrna_strand>TCAAATGGACAATGGAAAATATGGAGAAAGGCCAATGATTTTGGCTATGAAAGGCCATCCAGGGACAGGTAAGAGCACACTTGCACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGTTGGGGGGTGGAGGTTCCAAGACTTGTTGTGGATACAACATGTGCTAATGGGGTTCAACAAGTGGTATCAAACGTGTTGGAGTTTGTTTCTAATGCATGTGGTGAAAAAAAG-AAAAGTTGTATGTTAATTAGGAAATTATGAGACCGTTTGATAGAGTATATATTAATAATATTGAATTTAGTTATGTTAAAATTACTTTTTTCTAATATTTAAATTGATGTATTANNAATCGTTCTATAACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E208959" ref_strand="+" ref_description="SGN-E208959 [cLEC-38-A20]">
      <seq>tcaaatggacaatggaaaatatggagaaaggccaatgattttggctatgaaaggccatccagggacaggtaagagcacacttgcacaatccatagctaaaaccctaaaatgtcctcttatagacaaagatcacttcaaagattgcactaaaccacttcaacaaatcactaaagccacaaaactcatcaatgacctatcatacgatgccatgtggcgagtcgcctccgctcagctagacttaggtctgagcgtggtgatcgactcaccactctcacgtcgagctcaccttgaccggatcattgagatcgcgaatcatagtggggctcaggttgttgtagtggagtgcaagccgagggatcaagccaagtggcgtaggcggctcgagctgaggggtgagctggtggaatatggctcaagctggcataagccatccacgtggcaagaaatggagaagttgttggaagggtatgaagggtgttgggattatgatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="3817" stop="2724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3517" g_stop="3024" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E208959" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3517" e_stop="3024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGGACAATGGAAAATATGGAGAAAGGCCAATGATTTTGGCTATGAAAGGCCATCCAGGGACAGGTAAGAGCACACTTGCACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGTTG</genome_strand>
        <mrna_strand>TCAAATGGACAATGGAAAATATGGAGAAAGGCCAATGATTTTGGCTATGAAAGGCCATCCAGGGACAGGTAAGAGCACACTTGCACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E395788" ref_strand="+" ref_description="SGN-E395788 [TUS-18-A19]">
      <seq>atcaaatggacaatggaaaatatggagaaaggccaatgattttggctatgaaaggccatccagggacaggtaagagcacacttgcacaatccatagctaaaaccctaaaatgtcctcttatagacaaagatcacttcaaagattgcactaaaccacttcaacaaatcactaaagccacaaaactcatcaatgacctatcatacgatgccatgtggcgagtcgcctccgctcagctagacttaggtctgagcgtggtgatcgactcaccactctcacgtcgagctcaccttgaccggatcattgagatcgcgaatcatagtggggctcaggttgttgtagtggagtgcaagccgagggatcaagccaagtggcgtaggcggctcgagctgaggggtgagctggtggaggggggggggggctggcataacccatccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="3818" stop="2813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3518" g_stop="3083" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E395788" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3518" e_stop="3083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATGGACAATGGAAAATATGGAGAAAGGCCAATGATTTTGGCTATGAAAGGCCATCCAGGGACAGGTAAGAGCACACTTGCACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCAC</genome_strand>
        <mrna_strand>ATCAAATGGACAATGGAAAATATGGAGAAAGGCCAATGATTTTGGCTATGAAAGGCCATCCAGGGACAGGTAAGAGCACACTTGCACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAGGGGGGGGGGGGCTGGCATAACCCATCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E298638" ref_strand="+" ref_description="SGN-E298638 [cLET-44-A20]">
      <seq>tcattacatcggatttcagggtgagctaacgcttctagcttggactggatcttcttcttcatgtcttgatgccttgaagttccggcatggactagctgtttatgtattttagcttcttagatactcttagatttagtaatttgaagtacatgttcttgtgatgatgactgccagattttggggataataatagttgttgagtttttagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="13626" stop="12825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13326" g_stop="13128" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="207" polyA_stop="219"/>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E298638" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>199</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13326" e_stop="13128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCCTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTTATGTATTTTAGCTTCTTAGACATTTTTAG--TTAGTAATTTGATCATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTATTGA</genome_strand>
        <mrna_strand>TCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTGTTTATGTATTTTAGCTTCTTAGATACTCTTAGATTTAGTAATTTGA-AGTACATGTTCTTGTGATGATGACTGCCAGATTTTGGGGATAATAATAGTTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="13916" stop="13080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13616" g_stop="13380" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13616" e_stop="13380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACCGAAATCCCAAATGAGCATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGT-GTTTGTACTGACCCCCTACTTTTATGTTTTCTTTCCTTGTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGA-CCCCTACTTTTATG-TTTATCTTCTTGTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="14371" stop="13172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14071" g_stop="13896" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13895" i_stop="13818" i_length="78">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13817" g_stop="13472" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="515" r_length="342" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14071" e_stop="13896"/>
          <exon e_start="13817" e_stop="13472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCAGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGGTGCCACGTTCCGGTATCAGGATAGAATATGGATCGGGTGTCACGTTTCGACACCAGGATAGAATATGGATCAGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAAGATAATGAATCTTGAAAGATGTTAATATATTCAATCTAATGAACCGAAATCCCAAATGAGCATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAG..............................................................................GATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATAT--GGATCGG-GTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAAT-AAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E220638" ref_strand="-" ref_description="SGN-E220638 [cLEL-12-L22]">
      <seq>ttcacaggtttatatatggcacaaaggctcaggtgaccttgttgcgacactggctggacattcaggggcggtgaattgtgttagctggaacccaacaaatcctcatatgctggcatctgcgagtgatgatggtacaattcgtatatggggcgataatcgagtaaacacaaagcaacatggcactgctaatggtgtgaactactgcaatgggcgaagttgaactctgagatgcaaaagggcagcgtgtaacgttacaaatatctttcatcgctatcactggtttctgtgtatattctgtatgttcatgtcgaatcaacatttatgacaaacaagaatgtgaaatttgcattcagtccattaataaatagtgtactctttcctccatattttagattttcttttccatttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="16788" stop="15783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16486" g_stop="16084" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="410" r_length="403" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="411" polyA_stop="432"/>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E220638" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220638" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16486" e_stop="16084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATATATGGCACAGAGGCTCAGGTGAACTTGTTGCGACACTGGCTGGACATTCAGGGGCGGTGAACTGTGTTAGCTGGAACCCAACAAATCCTCATATGCTGGCATCTGCGAGTGATGATGGTACAATTCGTATATGGGGCGATAATCGAGTAAACACAAAGCAACATGACACTGCTAATGGTGTGAACTACTGCAATGGGCGAAGTTGAACTCTGAGATGCAAAAGGGCAGCGTGTAACGTTACAAATATCTTTCATCGCTATCACTGGTTTCTGTGTATATTCTGTATGTTCATGTCGAATCAACATTTATGACAAACAAGAATGTGAAATTTGCATTCAGTCCATTAATAAATCGTGTACTCTTTCCTCCATATTTTAGATTTTCTTTTCCATTTAA</genome_strand>
        <mrna_strand>GTTTATATATGGCACAAAGGCTCAGGTGACCTTGTTGCGACACTGGCTGGACATTCAGGGGCGGTGAATTGTGTTAGCTGGAACCCAACAAATCCTCATATGCTGGCATCTGCGAGTGATGATGGTACAATTCGTATATGGGGCGATAATCGAGTAAACACAAAGCAACATGGCACTGCTAATGGTGTGAACTACTGCAATGGGCGAAGTTGAACTCTGAGATGCAAAAGGGCAGCGTGTAACGTTACAAATATCTTTCATCGCTATCACTGGTTTCTGTGTATATTCTGTATGTTCATGTCGAATCAACATTTATGACAAACAAGAATGTGAAATTTGCATTCAGTCCATTAATAAATAGTGTACTCTTTCCTCCATATTTTAGATTTTCTTTTCCATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E220527" ref_strand="-" ref_description="SGN-E220527 [cLEL-12-L22]">
      <seq>aatcctcatatgctggcatctgcaagtaatgatggtacaattcgtaaatggggcgataatcgagtaaacacaaagcaacatgacgctgctaatggtgtgaactactgcaatgggcgaagttgaactttaagatgcaaaagggcagcgtgtaacgttacaaatatctttcatcgctatcactggtttctgtgtatattctgtatgttcatgtcgaatcaacatttatgacaaacaagaatgtgaaatttgcattcagtccattaataaatcgtgtactctttcctccatattttagattttcttttccttttaaaaaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="16696" stop="15783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16396" g_stop="16084" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="319" polyA_stop="335"/>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E220527" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220527" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16396" e_stop="16084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTCATATGCTGGCATCTGCGAGTGATGATGGTACAATTCGTATATGGGGCGATAATCGAGTAAACACAAAGCAACATGACACTGCTAATGGTGTGAACTACTGCAATGGGCGAAGTTGAACTCTGAGATGCAAAAGGGCAGCGTGTAACGTTACAAATATCTTTCATCGCTATCACTGGTTTCTGTGTATATTCTGTATGTTCATGTCGAATCAACATTTATGACAAACAAGAATGTGAAATTTGCATTCAGTCCATTAATAAATCGTGTACTCTTTCCTCCATATTTTAGATTTTCTTTTCCATTTAA</genome_strand>
        <mrna_strand>AATCCTCATATGCTGGCATCTGCAAGTAATGATGGTACAATTCGTAAATGGGGCGATAATCGAGTAAACACAAAGCAACATGACGCTGCTAATGGTGTGAACTACTGCAATGGGCGAAGTTGAACTTTAAGATGCAAAAGGGCAGCGTGTAACGTTACAAATATCTTTCATCGCTATCACTGGTTTCTGTGTATATTCTGTATGTTCATGTCGAATCAACATTTATGACAAACAAGAATGTGAAATTTGCATTCAGTCCATTAATAAATCGTGTACTCTTTCCTCCATATTTTAGATTTTCTTTTCCTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E711021" ref_strand="+" ref_description="SGN-E711021 [FA57CH03]">
      <seq>tatggttccagaaaagagattggtacatcttgttgaacaagctcttgacttgcaactagatgcttgtagatttcacaactctgtggttggtgaaatgtcactgctcagtgatcatcactgcggaagagatcatattccatctctaacaatgcagatattacatgaacataaagatgaagtctggttcttgcagttttcccataatggaaagtacttagcctcgtcatctgccgattttgccgtaattatatgggaggtcaaattggatggcagtgtctgcatgaaacacagacttttgggtcacgagacatatgtctcgtatatatcatggagtcctgatgaccatcagcttctcacttgtggtgaagaggaagctgtcattcggtgggatgtcgagtctggtgtacgtatacacacttatgagaaaaaatttgttaagtttatctcatgcggctgggctcctgatggaaaaaggatattctgtggtgtaactgacaaaagcattagcatgtgggatttggaagggaaagagcttgagtgttggaaaggccacagggctactagaatatcggacttggggataacaagtgatgggaagcatgttatctctgtttgtaaagaaaatatgatagtattagttggatgggaatcaaaagtagagagagtaattcaggaggatcaggcaataacctcatttgtattgtccatggacagtaagtatgtgttggttagtctttccaaccaagaaattcatctctggaatatcgagggaactggtaaacttgtagccaaataataagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="26654" stop="17665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26354" g_stop="26201" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26200" i_stop="22267" i_length="3934">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.713" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22266" g_stop="22165" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="256" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22164" i_stop="18511" i_length="3654">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18510" g_stop="17965" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="803" r_length="547" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E711021" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26354" e_stop="26201"/>
          <exon e_start="22266" e_stop="22165"/>
          <exon e_start="18510" e_stop="17965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGTTCCAGAAAAGAGATTGGTACATCTTGTTGAACAAGCTCTTGACTTGCAACTAGATGCTTGTAGATTTCACAACTCTGTGGTTGGTGAAATGTCACTGCTCAGTGATCATCACTGCGGAAGAGATCATATTCCATCTCTAACAATGCAGGTTAATTCACATTAATAATTGGGTGTGCTTTTGATATACAAGCCTTTTGATTCTGCTCTTGATTGTTCGAGTCTGACATGTTCAAGAGAAACTTCATTTTGTGTCTCACACAACAGACACAGGTTGTGTGAGGCTTTGATCTACAAATTACTGGACCCTAGTCTTACACTTTTGGTCCACAAATTTGTGAAACAAAAAGAATCCCCACACAACTTGTGTCAGTTGTGTGAGACACAAAGTAAACTCTTTCCATGTTTCGTCTTGCAATCATGCACTAGTTTGTCCTATCATTATCCGAGTCAATAATTAGTGGAGTTGAATGAATATGATGGGAAATATTGATCAAGTTTTGTTCCTTTGCATTCTAAACAAATGTCATTGTTGTTAAAAGAGTCACCTCTTCTATTTTATGTCAATTATTTGAATGACATATGTTGGCATTAGGATGAAAAGCATTCTGAATTCATGCTTTGTTTCATTCAACTCTTTGTGGTTGAAGGTTTTGCCAATTTTTGCTTATGTTCTTTTGAAAGGCTTGTTTTGATTTGCACCCAAGGGTGTGACCTAGTGGTCATTGACTGGAGACAAAAAACACTAAGTTCCCATCTGTCCTAGACAAAAAACAAAGCATGAAATCATTTTCTTTGTTATGTATTTGTCATTCATGCTTATATTTATTAGTCTTGGATTGATATTTGTACTTTTTCTCCCTTCGTGCCCTTTTTCATTAAAGCCCACACTTCTTTTTGACAAAGGTAACAAATTTGTATATAGTTTTTCAGCACTAAAGACTGGGATCCCAAATTTAGACCGTGGAGCTACATACAGTTGATAGACTCAAAAAATCTTTAAAAACACTAGATTCTACTTCATCTTACAAAGAACCTAGAATACTGGAATAGTTACATGATCATTTACATACTCAGACTACACCAATAGCAAAAAGTGACAAGACAGCTCATTTTTATCCTATGTAAAGGCCCACTAATGCTCTCAAATTTCTCTCCTTCCATATGGTCCACCAAATCACTGTTGGGACAATTCTCCATCAGCTTTTGTCTGCACCGCCACTACCTTTATTGTTCCAACTTTCTATAGCCCGTCTTGCCCTTTATGGTATGGTCCTACTTATGCCCCTAAAGCTGGTAAATAGGTTCCAAAGTTGTCTAACCACCCTGCAGTGAAGAAACAAATGGTTGATTGTCTCTACCTGCTTCTCACAGAAACTGTCTTGGAGACATATGTATTCCCCTCTTCTTGTGATTCTCCTGAGTTAGTTTTGTCTCTTTTACTACCAACCAAGTAAAGATTGCCTCCCTATATGGAATTTTGACTTTCTAGATAAGCTTCCAAGGCAAAAATTTGAGTTGAGTCCCTATCTGGTTCAGATTCTTGTAGGCAGAGCTAACTGTGAAAATACCTTTGCTATGATACATGAGTGTCTTCTCCCTCTTGCAATCCTCCAAATTGGTCTAGGGTGCCACAAAATTTAGCTAATCTATCCATATCCCAGTCTTGCATCATCGTTCTCTATGTTAAGTTCCATCCATGGATGGATCAAACTCCTTCAAAATGGCCTGTTGTTGCTGATTCAACAGATAAATATCTGAAAAAGTAAGAACTGCTTGAGGCTGCCATTTCCTAACCAGCTAATCCTAAACAAAATCTTCCTTCCATTGTTTATACTGGTCTCTGGGAACGTATATTGCACATTTGTCCCTTATTATTATTATTAATATTGTTAAAGCAGAAAGCTAATCAGTACACATTAACCCATGTACAAAATAATTCATAAAATATATACGAGTCAGACATCAGCAAATAATGAAGATACACAAAAATAGTATAAAAAAAGGAAGAAGATTAAGATAAGGTAAAAAGTTAACCTATGATATTGCTGATTGTAGTATGGCAAGTGGAAAAAAATAAAGAAAGTGAAATGTGATACAAAGGAAACAAATTGATATGTGCACGTACTGAGGAATATAAAAAGACAGCAACAATATCTTTACCAATGTAGAAGAGGAAAGAACAAAAGATGAAACGAACTTCTATTTCATATACATAACTTCCATGTCTTTCATATTCATAACCTTCAAATATTTAATGTGTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGATGATGGTGATGATGATGATGATGATTGTATATAGTTCTTTCAATGAAACTTTGCCACAAAATTCTGATTGATCTCCACAGGTTCATACCATAGGGAGAAATTACTTCCTTAGTTGTCTAGTACTCTAATTTTCTCATACTTGGTCTGAATTACTCTTTAACCCATTTAGCCTGCTCCTCTTTAGGAGATCTCCACAACCACTTCATTATTAAGCTTTTGTTCTATTTCCTCAAGTTTATAATGCCTAACCCATCTAGTTTCTTTGAAAGAACTACAGTCTTCCATTTGACCTAATGAAATCCTTTGTTCTCCTTCTTACCATTCCACAAAAACTCCTCCTTAAAGCATCAATTCTTTCTTCTACCCTAGTTGGGAGAGGAAAAAATGACATCTAGTACGTCGGTAGAACATCTAAGACTGAGTGATCAGGAACAATCTTCCACCTCAGACAGATACTATGCTTTCCATCTGGATAGTCTTCTTTCACATCTCTTCACCACCCCATTCAAAATCTCTCTGGATTTGCTTTTGGCTCCCAAAGGCATCCCCAAATAAATTGTTGGTAGTTGACCTATTTCTCCTCCCAAGATCTCTGGCAGATTTACATTCTGTTCACATCATTAATTGGAAAAATATGACCTCCGATTGATATGGAGCCCAATAGTTGCTCTGATTAATCTCCTGGACACACCCAAACAATTCTTACCATTATGCTCCCTCTCAAAAAGAATTTTTTATTAATAATGCAACAAGCTAGTGTCTTCATGGCTCCACAGAAAAAGAAACTATGCAAATTGCTTCAATGTATCTATATGTCACAAGTACATATATAAACTCTCTAGAAGAATAGAATCTTATGTAATATTTTGTTCAGCAAAAAACAAATGAAGAACAGAGATTTGACTCTCCAGCTTTAATGCCGTGGATCTTCAAAGTGCCAGCTCCTTTTGAGTAGTTATTGACAGCGGAACTCTAACTAAAAGCATATTTATTGCAGCCTCGGTCCATGAGCAAATTAATATGGGGAATGCATGCTGTCCTATCATAAGCTTGCTAATGAATGCAGTTTTTATTTACTAATTTGAAAAAAATGAATGCACTTTTATTTTTATGTCCTAGAAAGATGCTGGAGTTAATAGGTAAGCACTATTGATTTCTGGGGAGCTTTGTGATCTTCAGGTCCTTAGTGAGCTTGTGTCCACCATTTCATGTGGCTTTAGTCACAACAATATGAAATGTTTCATGGATTGTTGCCAAACTTTTGAATCAATGAAAGTCAGTACCTGTAGGCACAACATCACATTTTTCGTCTCTTGTGAAATTGGTCTCCCTTTCTCTTGTCATTATATCTTTTTTGTGTAAACAAGTATGTTCTTTTTTTCCTCTAAATTTTGGCTTTGTTTGGGACTGGGGTGTAACTTTTGTTTTGTTCATGTTGTTTATGCCATTTCAAATTGATCTTATATTTGGGAGGTTTAAAGTTTACCAGGAGATGTGGTTGGATCCACTGTGGTTTAAGTGAAAGCAGAAGAAATTGCCTTGGGGTGGGGTGGAGGGGTTAGTTAAAGTGCCAAGGAGTTGTAAATGTGCTTTGATAAAATTGAACTTCACTGGCTTTCTGCTTGTTATCATTTACCGACGAGCTGTTATTTTATAAGTCGTTTTAGAGCAATCTTTGACAGTGGAGTCTGATTTCTTGCAGATACAATATGTTAATCACCTTAAACGCTAATTGTTTCTTCATTGCTTCTACTGCACCAGATATTACATGAACATAAAGATGAAGTCTGGTTCTTGCAGTTTTCCCATAATGGAAAGTACTTAGCCTCGTCATCTGCCGATTTTGCCGTAATTATATGGGAGGTATTTTAAGTTCTCTTTATTTTGTTGTCATATCAGTAGTTGTTTTTCAACTTAGATCAATTGCTACTTTTACTTTTTATCGAATATCTTTTCCTTCATTCTTGCATCTTAGTCACAGCTACCTCCATACTTGATAGGGTCTTCTACTTCTGATTTGAAGGATTAGTAACTTGTGTGCTTCACAGTCTCATGGAGTGCCTCATATGGGTGCTCAAATTTCTGTGGTTTCCGCGACCTCGTGTAGTAATATATTTGAACACAAGGACAGCAAATTATCTGTGGAAGTGATATCAACCGGTTGAGATTAAGGTTTATTCTTTTTTTTTTGGTGGCATATTTCCATTTGATCAGGTGCTTAGAGGATATTTTTAATTTGATCATATATCAGTTTAAAAAATAAGGATATGCATGCGATTTATAAATTCCTATTTTTACAGAAAACCCTTGAATTATTAACGGAATGAGATCGGCTCAAGTGAAATTGAATGGATATAAAGGATTCATATAGCACCCAAGGGTGTGGCTAAGTGGTCAGTGAATTGGGCTGAGAACCATGAGGTTCAAATCCCAACAGACACAAAAAAAAGAACTAGGTGATTTCTTTCCCTCTACTCTAGTCTTGGTGGACAAAGTTGCTTGATACTTGTTGCTGGTGGGGGGTGGCAAGGTCGAGGTGTGTGCAAGCTGGCTAAGACACCATGATTATCAAAATAAATAAATAAAGAATTCATATAGCCTAAGTAGGATATTTCTTCCCATGAGGTCTCAGGTTTCAATTTGAGGCAAAAATTGCTAAGTGATTTTTTCCCATCTGCTTGAGCCTTGGCAGGTAAGCAGGTACCGATGTAATAGTCTTTTCCCATCTGCTTGAGCTTTGAGGTGTAATTATTAGAAAGCACCACCATAATTGCAAGTTGTAGATACTTCCACGGGAGATATATTAGGATTGACTGTAATCAGATAGTTTGTGGCCCTATTCGTCCAAGTTAACCACCCATACACTGAATTTTAGGGAGTCCAACATGCATATATGTATGCGGACCAAGACAGACACAGAGACGAATCTACATGTCTACATCTAACAGTGAAGTCTCCTCATCCTTCTGATTTCGGATCCACATGATTTGCAGCTTATTAAAATTAAACTTATCAAGAATGCCACTTTGCATTTTGTCTCTAAAAAAGAATCCTACTTTGCATGGTCTCTAAAAAAGAATCCTACTTTGCAATCTGAAGAAAAGTAGTCTGCCATCGTTTGAGTGTTAAAAGCCCACTGCCTTCATACTTGCCATATAAAAATAGAGTCCAGTGACTACCACTGACACATTTGTGGTTTCTGACTGTTATTGTTGTTAAACTCAAGTAGGACTGGGATGTATGATTCAATTTTTATGCTGTTATGTTGACAGCCAATTGGAACTTCCTTACATTGACCAACTATGCCGCAGTTAATGTTTCTGTTGTGTTATAAGTGTGATTATTATTATATTTCCTTGTGTTTCGCCAAGTTCTTATGGTGTAATAGGAGAGTTTGTATTAATTATTATTATGCATGGACTTGTACTTTGCACTAAATAATTTTTAATATTGAATATTTTGATCTTTTCTACTATCAAGCAAAAAAGAGAGTACTTGTTGTAGAGCCAGACAGAATAAATGATCAAAGTAATATGATTTTGCTTTCCTTTTCCTTTCTTTTTTGTGCAACAAAAAATAGATGATATCGAAGTTATTACTAATTCTTTTTTATTTATTCCCACTTGTTTCTGCTACCCGCATCGGGGTCCCGACTAATCCATTGCCGCATAAGGCCTGGGTGGGTTGGGGGGGTGAGGGGAGTGCTCCCTACCGTGCCATACCCAGGGCTCGAACCCGAGACCCCTGGTTTAGGATGGAGGGATTCTATCCATCCCACCATAACCCTACTCCTTGGTGATAAAGCTGTAACTGTACTTTTGGTTGTACTTCTTTCACAACATTCCATCTAAAGCTTCAAACTATATGAATAATGCCTCTATTGCCTCTTTTACTTGCCCTCCCCAAAAAAGTCAGTTTCACACTTATTTTATATATGGCCTGAAGTGTTAGTTTCATGGGACGTGTTTAATGTATCCTAATTAAATTTTGCAGCCTCATCGTTATAAAGTTACTACTCTCTCAGTTTCTATAGTTTTGATCCTATTTTACTGAGCGCGGAGTTGACAAATGAAGAGACTTCTAAAATTGTGGTCTTATGTAAACCGCGATTATAAGACCTTTGAAACTTGTGGTTTTAAACGTGCCATGACAGTTGTGTAGCTGTAAAAGCTTGTCATTAAGGGTAAAGTGTGAAGTGTAAGTTACCTTCTCAAAAAAAGGAGGAAACTTTTAAGTTAAATAATCTCCAAATTTAGGAAGGAGCCAGGAAATAGAGTCCATCACAACTGAAACGAATGGAGAATATGTATTGGCTAGAGGTATTCATGTTGCCAAATAGTTATGGATGGTATGTTAAGAGTTAAATGTGCATGTCTATGAAAGGGATGAGTAAATTACAGATCTGGTGGACAGATTTGCAGAAGCTGCACAAAAAAAATAAAAAATAAATAAAAAAATAAGAGCCTTGCTATTACTAAGCTGCCTGTTTGCCTTTTCTTGCATTGAAGGTTTATTGAATTAATAACAAACCTTTGGGTTGAGTGGAGGCTTTCTAAAACTTAATGTGGGGTTTATCATTAGATTTTTTGACCTAAGACGACAGTGATGTTTAACTGATATTTGGCACTAAGCATTCAATTTGATGGGAAAATCAGTTGAATACAAAATAATTGTTAAATTTATATTCTAGCTTTAGTTCCATTTTAGTTTGTCCTTACTCCTTCCATTCCAGTTTATATGACGCTCTTTCCATTTTGGTGCATACCAAAATGTTTGACACCATTCTGTTTTATACAACTTTCAATAACTTTAAGGATTCATTGAACTACTCAGACTTCAACTTCGATGTGATGTTTGCTTGTTTTTTCAACCTCCACTTTAATATTCTCTTCCATTATCAATAATACATTAAATAAGTCAGATTACATATTTCAACTCCGTGCTGAATCAATCACCCTTACATAAAATGAAATGGGTGGAGTAGTCATTTCATAGAGTGATATTCTTCCTTTTTCAAGTTTAAAGAGAAACAAACACATGGGAGATTTCCATGCCTTAGAAAACATGAAAGCTGACAGCTAATGATACTTCACCATATGAAGAATTTTGAACAAACTGTTGAGAAAAGAAATTTTAAGAGAGTTCCAGATGTCTTGGTGTGCTTTATTCAACTGGCTTTGTAAGTTGGAAATCAGAATTTAATGTATTTACTCCTGAACAATGCTTCTTTTTGCTAATCAAATGACTAGTATTGGAATATTGAGTTCATTTCTTCTTCTTTTTGGTGCTTGAATATGTTTTGGAGGAATATGATATGCAAGGTTCATTCTCCAAATTTGATCCTAATATCTGGTGCATTTCATGTTTGAATTAAATAGAAAAAGATTGTGTTTATGTGGGATTGGGGGGAGGGAGTGCTGGGAACAAAAGAAAAGATAGCTGTTAATTATGAAGATTTGAAGTAATCGGGATAATAGATGGAGTGTAAGTTCATCCCTTATTTTCTGCTCTTTTCAGGTCAAATTGGATGGCAGTGTCTGCATGAAACACAGACTTTTGGGTCACGAGACATATGTCTCGTATATATCATGGAGTCCTGATGACCATCAGCTTCTCACTTGTGGTGAAGAGGAAGCTGTCATTCGGTGGGATGTCGAGTCTGGTGTACGTATACACACTTATGAGAAAAAATTTGTTAAGTTTATCTCATGCGGCTGGGCTCCTGATGGAAAAAGGATATTCTGTGGTGTAACTGACAAAAGCATTAGCATGTGGGATTTGGAAGGGAAAGAGCTTGAGTGTTGGAAAGGCCACAGGGCTACTAGAATATCGGACTTGGGGATAACAAGTGATGGGAAGCATGTTATCTCTGTTTGTAAAGAAAATATGATAGTATTAGTTGGATGGGAATCAAAAGTAGAGAGAGTAATTCAGGAGGATCAGGCAATAACCTCATTTGTATTGTCCATGGACAGTAAGTATGTGTTGGTTAGTCTTTCAAACCAAGAAATTCATCTCTGGAATATCGAGGGAACTGTAAAACTTGTAGCCAAAT-ATAAGGGG</genome_strand>
        <mrna_strand>TATGGTTCCAGAAAAGAGATTGGTACATCTTGTTGAACAAGCTCTTGACTTGCAACTAGATGCTTGTAGATTTCACAACTCTGTGGTTGGTGAAATGTCACTGCTCAGTGATCATCACTGCGGAAGAGATCATATTCCATCTCTAACAATGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTACATGAACATAAAGATGAAGTCTGGTTCTTGCAGTTTTCCCATAATGGAAAGTACTTAGCCTCGTCATCTGCCGATTTTGCCGTAATTATATGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATTGGATGGCAGTGTCTGCATGAAACACAGACTTTTGGGTCACGAGACATATGTCTCGTATATATCATGGAGTCCTGATGACCATCAGCTTCTCACTTGTGGTGAAGAGGAAGCTGTCATTCGGTGGGATGTCGAGTCTGGTGTACGTATACACACTTATGAGAAAAAATTTGTTAAGTTTATCTCATGCGGCTGGGCTCCTGATGGAAAAAGGATATTCTGTGGTGTAACTGACAAAAGCATTAGCATGTGGGATTTGGAAGGGAAAGAGCTTGAGTGTTGGAAAGGCCACAGGGCTACTAGAATATCGGACTTGGGGATAACAAGTGATGGGAAGCATGTTATCTCTGTTTGTAAAGAAAATATGATAGTATTAGTTGGATGGGAATCAAAAGTAGAGAGAGTAATTCAGGAGGATCAGGCAATAACCTCATTTGTATTGTCCATGGACAGTAAGTATGTGTTGGTTAGTCTTTCCAACCAAGAAATTCATCTCTGGAATATCGAGGGAACTGGTAAACTTGTAGCCAAATAATAAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E330510" ref_strand="+" ref_description="SGN-E330510 [cTOD-4-N4]">
      <seq>ttttgaattgttgcacaaggaaaaagttatggatgctctgaggacactgaggggcgagatctcacctctttgcataaacaatgatagagtccatcagctttcgtttttcattatatcaccttctcagcaggttcttactggggtatcaggtcaaggcacagcgagagtaaagtcacgtacagagctactagaggaattgcaaagattgcttcccccaacagttatggttccagaaaagagattggtacatcttgttgaacaagctcttgacttgcaactagatgcttgtagatttcacaactctgtggttggtgaaatgtcactgctcagtgatcatcactgcggaagagatcatattccatctctaacaatgcagatattacatgaacataaagatgaagtctggttcttgcagttttcccataatggaaagtacttagcctcgtcatctgccgattttgccgtaattatatgggaggtcaaattggatggcagtgtctgcatgaaacacagacttttgggtcacgagacatatgtctcgtatatatcatggagtcctgatgaccatcagcttctcacttgtggtgaagaggaagctgtcattcggtgggatgtcgagtctggtgtacgtatacacacttatgagaaaaaatttgttaagtttatctcatgcggctgggctcctgatggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="26876" stop="17996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26576" g_stop="26201" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26200" i_stop="22267" i_length="3934">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.713" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22266" g_stop="22165" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="478" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22164" i_stop="18511" i_length="3654">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18510" g_stop="18296" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="693" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E330510" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26576" e_stop="26201"/>
          <exon e_start="22266" e_stop="22165"/>
          <exon e_start="18510" e_stop="18296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAATTGTTGCACAAGGAAAAAGTTATGGATGCTCTGAGGACACTGAGGGGCGAGATCTCACCTCTTTGCATAAACAATGATAGAGTCCATCAGCTTTCGTTTTTCATTATATCACCTTCTCAGCAGGTTCTTACTGGGGTATCAGGTCAAGGCACAGCGAGAGTAAAGTCACGTACAGAGCTACTAGAGGAATTGCAAAGATTGCTTCCCCCAACAGTTATGGTTCCAGAAAAGAGATTGGTACATCTTGTTGAACAAGCTCTTGACTTGCAACTAGATGCTTGTAGATTTCACAACTCTGTGGTTGGTGAAATGTCACTGCTCAGTGATCATCACTGCGGAAGAGATCATATTCCATCTCTAACAATGCAGGTTAATTCACATTAATAATTGGGTGTGCTTTTGATATACAAGCCTTTTGATTCTGCTCTTGATTGTTCGAGTCTGACATGTTCAAGAGAAACTTCATTTTGTGTCTCACACAACAGACACAGGTTGTGTGAGGCTTTGATCTACAAATTACTGGACCCTAGTCTTACACTTTTGGTCCACAAATTTGTGAAACAAAAAGAATCCCCACACAACTTGTGTCAGTTGTGTGAGACACAAAGTAAACTCTTTCCATGTTTCGTCTTGCAATCATGCACTAGTTTGTCCTATCATTATCCGAGTCAATAATTAGTGGAGTTGAATGAATATGATGGGAAATATTGATCAAGTTTTGTTCCTTTGCATTCTAAACAAATGTCATTGTTGTTAAAAGAGTCACCTCTTCTATTTTATGTCAATTATTTGAATGACATATGTTGGCATTAGGATGAAAAGCATTCTGAATTCATGCTTTGTTTCATTCAACTCTTTGTGGTTGAAGGTTTTGCCAATTTTTGCTTATGTTCTTTTGAAAGGCTTGTTTTGATTTGCACCCAAGGGTGTGACCTAGTGGTCATTGACTGGAGACAAAAAACACTAAGTTCCCATCTGTCCTAGACAAAAAACAAAGCATGAAATCATTTTCTTTGTTATGTATTTGTCATTCATGCTTATATTTATTAGTCTTGGATTGATATTTGTACTTTTTCTCCCTTCGTGCCCTTTTTCATTAAAGCCCACACTTCTTTTTGACAAAGGTAACAAATTTGTATATAGTTTTTCAGCACTAAAGACTGGGATCCCAAATTTAGACCGTGGAGCTACATACAGTTGATAGACTCAAAAAATCTTTAAAAACACTAGATTCTACTTCATCTTACAAAGAACCTAGAATACTGGAATAGTTACATGATCATTTACATACTCAGACTACACCAATAGCAAAAAGTGACAAGACAGCTCATTTTTATCCTATGTAAAGGCCCACTAATGCTCTCAAATTTCTCTCCTTCCATATGGTCCACCAAATCACTGTTGGGACAATTCTCCATCAGCTTTTGTCTGCACCGCCACTACCTTTATTGTTCCAACTTTCTATAGCCCGTCTTGCCCTTTATGGTATGGTCCTACTTATGCCCCTAAAGCTGGTAAATAGGTTCCAAAGTTGTCTAACCACCCTGCAGTGAAGAAACAAATGGTTGATTGTCTCTACCTGCTTCTCACAGAAACTGTCTTGGAGACATATGTATTCCCCTCTTCTTGTGATTCTCCTGAGTTAGTTTTGTCTCTTTTACTACCAACCAAGTAAAGATTGCCTCCCTATATGGAATTTTGACTTTCTAGATAAGCTTCCAAGGCAAAAATTTGAGTTGAGTCCCTATCTGGTTCAGATTCTTGTAGGCAGAGCTAACTGTGAAAATACCTTTGCTATGATACATGAGTGTCTTCTCCCTCTTGCAATCCTCCAAATTGGTCTAGGGTGCCACAAAATTTAGCTAATCTATCCATATCCCAGTCTTGCATCATCGTTCTCTATGTTAAGTTCCATCCATGGATGGATCAAACTCCTTCAAAATGGCCTGTTGTTGCTGATTCAACAGATAAATATCTGAAAAAGTAAGAACTGCTTGAGGCTGCCATTTCCTAACCAGCTAATCCTAAACAAAATCTTCCTTCCATTGTTTATACTGGTCTCTGGGAACGTATATTGCACATTTGTCCCTTATTATTATTATTAATATTGTTAAAGCAGAAAGCTAATCAGTACACATTAACCCATGTACAAAATAATTCATAAAATATATACGAGTCAGACATCAGCAAATAATGAAGATACACAAAAATAGTATAAAAAAAGGAAGAAGATTAAGATAAGGTAAAAAGTTAACCTATGATATTGCTGATTGTAGTATGGCAAGTGGAAAAAAATAAAGAAAGTGAAATGTGATACAAAGGAAACAAATTGATATGTGCACGTACTGAGGAATATAAAAAGACAGCAACAATATCTTTACCAATGTAGAAGAGGAAAGAACAAAAGATGAAACGAACTTCTATTTCATATACATAACTTCCATGTCTTTCATATTCATAACCTTCAAATATTTAATGTGTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGATGATGGTGATGATGATGATGATGATTGTATATAGTTCTTTCAATGAAACTTTGCCACAAAATTCTGATTGATCTCCACAGGTTCATACCATAGGGAGAAATTACTTCCTTAGTTGTCTAGTACTCTAATTTTCTCATACTTGGTCTGAATTACTCTTTAACCCATTTAGCCTGCTCCTCTTTAGGAGATCTCCACAACCACTTCATTATTAAGCTTTTGTTCTATTTCCTCAAGTTTATAATGCCTAACCCATCTAGTTTCTTTGAAAGAACTACAGTCTTCCATTTGACCTAATGAAATCCTTTGTTCTCCTTCTTACCATTCCACAAAAACTCCTCCTTAAAGCATCAATTCTTTCTTCTACCCTAGTTGGGAGAGGAAAAAATGACATCTAGTACGTCGGTAGAACATCTAAGACTGAGTGATCAGGAACAATCTTCCACCTCAGACAGATACTATGCTTTCCATCTGGATAGTCTTCTTTCACATCTCTTCACCACCCCATTCAAAATCTCTCTGGATTTGCTTTTGGCTCCCAAAGGCATCCCCAAATAAATTGTTGGTAGTTGACCTATTTCTCCTCCCAAGATCTCTGGCAGATTTACATTCTGTTCACATCATTAATTGGAAAAATATGACCTCCGATTGATATGGAGCCCAATAGTTGCTCTGATTAATCTCCTGGACACACCCAAACAATTCTTACCATTATGCTCCCTCTCAAAAAGAATTTTTTATTAATAATGCAACAAGCTAGTGTCTTCATGGCTCCACAGAAAAAGAAACTATGCAAATTGCTTCAATGTATCTATATGTCACAAGTACATATATAAACTCTCTAGAAGAATAGAATCTTATGTAATATTTTGTTCAGCAAAAAACAAATGAAGAACAGAGATTTGACTCTCCAGCTTTAATGCCGTGGATCTTCAAAGTGCCAGCTCCTTTTGAGTAGTTATTGACAGCGGAACTCTAACTAAAAGCATATTTATTGCAGCCTCGGTCCATGAGCAAATTAATATGGGGAATGCATGCTGTCCTATCATAAGCTTGCTAATGAATGCAGTTTTTATTTACTAATTTGAAAAAAATGAATGCACTTTTATTTTTATGTCCTAGAAAGATGCTGGAGTTAATAGGTAAGCACTATTGATTTCTGGGGAGCTTTGTGATCTTCAGGTCCTTAGTGAGCTTGTGTCCACCATTTCATGTGGCTTTAGTCACAACAATATGAAATGTTTCATGGATTGTTGCCAAACTTTTGAATCAATGAAAGTCAGTACCTGTAGGCACAACATCACATTTTTCGTCTCTTGTGAAATTGGTCTCCCTTTCTCTTGTCATTATATCTTTTTTGTGTAAACAAGTATGTTCTTTTTTTCCTCTAAATTTTGGCTTTGTTTGGGACTGGGGTGTAACTTTTGTTTTGTTCATGTTGTTTATGCCATTTCAAATTGATCTTATATTTGGGAGGTTTAAAGTTTACCAGGAGATGTGGTTGGATCCACTGTGGTTTAAGTGAAAGCAGAAGAAATTGCCTTGGGGTGGGGTGGAGGGGTTAGTTAAAGTGCCAAGGAGTTGTAAATGTGCTTTGATAAAATTGAACTTCACTGGCTTTCTGCTTGTTATCATTTACCGACGAGCTGTTATTTTATAAGTCGTTTTAGAGCAATCTTTGACAGTGGAGTCTGATTTCTTGCAGATACAATATGTTAATCACCTTAAACGCTAATTGTTTCTTCATTGCTTCTACTGCACCAGATATTACATGAACATAAAGATGAAGTCTGGTTCTTGCAGTTTTCCCATAATGGAAAGTACTTAGCCTCGTCATCTGCCGATTTTGCCGTAATTATATGGGAGGTATTTTAAGTTCTCTTTATTTTGTTGTCATATCAGTAGTTGTTTTTCAACTTAGATCAATTGCTACTTTTACTTTTTATCGAATATCTTTTCCTTCATTCTTGCATCTTAGTCACAGCTACCTCCATACTTGATAGGGTCTTCTACTTCTGATTTGAAGGATTAGTAACTTGTGTGCTTCACAGTCTCATGGAGTGCCTCATATGGGTGCTCAAATTTCTGTGGTTTCCGCGACCTCGTGTAGTAATATATTTGAACACAAGGACAGCAAATTATCTGTGGAAGTGATATCAACCGGTTGAGATTAAGGTTTATTCTTTTTTTTTTGGTGGCATATTTCCATTTGATCAGGTGCTTAGAGGATATTTTTAATTTGATCATATATCAGTTTAAAAAATAAGGATATGCATGCGATTTATAAATTCCTATTTTTACAGAAAACCCTTGAATTATTAACGGAATGAGATCGGCTCAAGTGAAATTGAATGGATATAAAGGATTCATATAGCACCCAAGGGTGTGGCTAAGTGGTCAGTGAATTGGGCTGAGAACCATGAGGTTCAAATCCCAACAGACACAAAAAAAAGAACTAGGTGATTTCTTTCCCTCTACTCTAGTCTTGGTGGACAAAGTTGCTTGATACTTGTTGCTGGTGGGGGGTGGCAAGGTCGAGGTGTGTGCAAGCTGGCTAAGACACCATGATTATCAAAATAAATAAATAAAGAATTCATATAGCCTAAGTAGGATATTTCTTCCCATGAGGTCTCAGGTTTCAATTTGAGGCAAAAATTGCTAAGTGATTTTTTCCCATCTGCTTGAGCCTTGGCAGGTAAGCAGGTACCGATGTAATAGTCTTTTCCCATCTGCTTGAGCTTTGAGGTGTAATTATTAGAAAGCACCACCATAATTGCAAGTTGTAGATACTTCCACGGGAGATATATTAGGATTGACTGTAATCAGATAGTTTGTGGCCCTATTCGTCCAAGTTAACCACCCATACACTGAATTTTAGGGAGTCCAACATGCATATATGTATGCGGACCAAGACAGACACAGAGACGAATCTACATGTCTACATCTAACAGTGAAGTCTCCTCATCCTTCTGATTTCGGATCCACATGATTTGCAGCTTATTAAAATTAAACTTATCAAGAATGCCACTTTGCATTTTGTCTCTAAAAAAGAATCCTACTTTGCATGGTCTCTAAAAAAGAATCCTACTTTGCAATCTGAAGAAAAGTAGTCTGCCATCGTTTGAGTGTTAAAAGCCCACTGCCTTCATACTTGCCATATAAAAATAGAGTCCAGTGACTACCACTGACACATTTGTGGTTTCTGACTGTTATTGTTGTTAAACTCAAGTAGGACTGGGATGTATGATTCAATTTTTATGCTGTTATGTTGACAGCCAATTGGAACTTCCTTACATTGACCAACTATGCCGCAGTTAATGTTTCTGTTGTGTTATAAGTGTGATTATTATTATATTTCCTTGTGTTTCGCCAAGTTCTTATGGTGTAATAGGAGAGTTTGTATTAATTATTATTATGCATGGACTTGTACTTTGCACTAAATAATTTTTAATATTGAATATTTTGATCTTTTCTACTATCAAGCAAAAAAGAGAGTACTTGTTGTAGAGCCAGACAGAATAAATGATCAAAGTAATATGATTTTGCTTTCCTTTTCCTTTCTTTTTTGTGCAACAAAAAATAGATGATATCGAAGTTATTACTAATTCTTTTTTATTTATTCCCACTTGTTTCTGCTACCCGCATCGGGGTCCCGACTAATCCATTGCCGCATAAGGCCTGGGTGGGTTGGGGGGGTGAGGGGAGTGCTCCCTACCGTGCCATACCCAGGGCTCGAACCCGAGACCCCTGGTTTAGGATGGAGGGATTCTATCCATCCCACCATAACCCTACTCCTTGGTGATAAAGCTGTAACTGTACTTTTGGTTGTACTTCTTTCACAACATTCCATCTAAAGCTTCAAACTATATGAATAATGCCTCTATTGCCTCTTTTACTTGCCCTCCCCAAAAAAGTCAGTTTCACACTTATTTTATATATGGCCTGAAGTGTTAGTTTCATGGGACGTGTTTAATGTATCCTAATTAAATTTTGCAGCCTCATCGTTATAAAGTTACTACTCTCTCAGTTTCTATAGTTTTGATCCTATTTTACTGAGCGCGGAGTTGACAAATGAAGAGACTTCTAAAATTGTGGTCTTATGTAAACCGCGATTATAAGACCTTTGAAACTTGTGGTTTTAAACGTGCCATGACAGTTGTGTAGCTGTAAAAGCTTGTCATTAAGGGTAAAGTGTGAAGTGTAAGTTACCTTCTCAAAAAAAGGAGGAAACTTTTAAGTTAAATAATCTCCAAATTTAGGAAGGAGCCAGGAAATAGAGTCCATCACAACTGAAACGAATGGAGAATATGTATTGGCTAGAGGTATTCATGTTGCCAAATAGTTATGGATGGTATGTTAAGAGTTAAATGTGCATGTCTATGAAAGGGATGAGTAAATTACAGATCTGGTGGACAGATTTGCAGAAGCTGCACAAAAAAAATAAAAAATAAATAAAAAAATAAGAGCCTTGCTATTACTAAGCTGCCTGTTTGCCTTTTCTTGCATTGAAGGTTTATTGAATTAATAACAAACCTTTGGGTTGAGTGGAGGCTTTCTAAAACTTAATGTGGGGTTTATCATTAGATTTTTTGACCTAAGACGACAGTGATGTTTAACTGATATTTGGCACTAAGCATTCAATTTGATGGGAAAATCAGTTGAATACAAAATAATTGTTAAATTTATATTCTAGCTTTAGTTCCATTTTAGTTTGTCCTTACTCCTTCCATTCCAGTTTATATGACGCTCTTTCCATTTTGGTGCATACCAAAATGTTTGACACCATTCTGTTTTATACAACTTTCAATAACTTTAAGGATTCATTGAACTACTCAGACTTCAACTTCGATGTGATGTTTGCTTGTTTTTTCAACCTCCACTTTAATATTCTCTTCCATTATCAATAATACATTAAATAAGTCAGATTACATATTTCAACTCCGTGCTGAATCAATCACCCTTACATAAAATGAAATGGGTGGAGTAGTCATTTCATAGAGTGATATTCTTCCTTTTTCAAGTTTAAAGAGAAACAAACACATGGGAGATTTCCATGCCTTAGAAAACATGAAAGCTGACAGCTAATGATACTTCACCATATGAAGAATTTTGAACAAACTGTTGAGAAAAGAAATTTTAAGAGAGTTCCAGATGTCTTGGTGTGCTTTATTCAACTGGCTTTGTAAGTTGGAAATCAGAATTTAATGTATTTACTCCTGAACAATGCTTCTTTTTGCTAATCAAATGACTAGTATTGGAATATTGAGTTCATTTCTTCTTCTTTTTGGTGCTTGAATATGTTTTGGAGGAATATGATATGCAAGGTTCATTCTCCAAATTTGATCCTAATATCTGGTGCATTTCATGTTTGAATTAAATAGAAAAAGATTGTGTTTATGTGGGATTGGGGGGAGGGAGTGCTGGGAACAAAAGAAAAGATAGCTGTTAATTATGAAGATTTGAAGTAATCGGGATAATAGATGGAGTGTAAGTTCATCCCTTATTTTCTGCTCTTTTCAGGTCAAATTGGATGGCAGTGTCTGCATGAAACACAGACTTTTGGGTCACGAGACATATGTCTCGTATATATCATGGAGTCCTGATGACCATCAGCTTCTCACTTGTGGTGAAGAGGAAGCTGTCATTCGGTGGGATGTCGAGTCTGGTGTACGTATACACACTTATGAGAAAAAATTTGTTAAGTTTATCTCATGCGGCTGGGCTCCTGATGGAAA</genome_strand>
        <mrna_strand>TTTTGAATTGTTGCACAAGGAAAAAGTTATGGATGCTCTGAGGACACTGAGGGGCGAGATCTCACCTCTTTGCATAAACAATGATAGAGTCCATCAGCTTTCGTTTTTCATTATATCACCTTCTCAGCAGGTTCTTACTGGGGTATCAGGTCAAGGCACAGCGAGAGTAAAGTCACGTACAGAGCTACTAGAGGAATTGCAAAGATTGCTTCCCCCAACAGTTATGGTTCCAGAAAAGAGATTGGTACATCTTGTTGAACAAGCTCTTGACTTGCAACTAGATGCTTGTAGATTTCACAACTCTGTGGTTGGTGAAATGTCACTGCTCAGTGATCATCACTGCGGAAGAGATCATATTCCATCTCTAACAATGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTACATGAACATAAAGATGAAGTCTGGTTCTTGCAGTTTTCCCATAATGGAAAGTACTTAGCCTCGTCATCTGCCGATTTTGCCGTAATTATATGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATTGGATGGCAGTGTCTGCATGAAACACAGACTTTTGGGTCACGAGACATATGTCTCGTATATATCATGGAGTCCTGATGACCATCAGCTTCTCACTTGTGGTGAAGAGGAAGCTGTCATTCGGTGGGATGTCGAGTCTGGTGTACGTATACACACTTATGAGAAAAAATTTGTTAAGTTTATCTCATGCGGCTGGGCTCCTGATGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E700867" ref_strand="+" ref_description="SGN-E700867 [FA14BE10]">
      <seq>aactctttcctccatttctctattcacaagttctccattaacacaaatactcaaatctctctacaggattcttactctcaacaatcaatcatataccttttttagctttcaatcgactgcttgtttacccacctaatctactagtcttagcttaccgacaaacgaaagggaataaaagaatacaatttgggataaaaccatttgcgatttgctggtttttcaatcagtgatttaggcctactattccaacttttcagttttgtcttcctcctgctgttatatatgggctgacgtgtttgtttcatgggagctgaggacgatgatgaaccaccatcaaaacgtgtgaaggtatcctccagtcaattggtagatatttctgacaggacatttgttagagatcctgcaagttgttcattgggtgacgcgatggctcgacccctgactcttcaaggggacgatgaggttgttggtacaaaaggagttgtcaagaaagttgaatttgttcggattataactgaggcattagattctcttggttacaaaaagactcgggccttactagaggaagagtcagggatacccttgcacacttccgtcgtaaatttgtttatgcagcaaattcttgatggtaaatgggatgaaagtttaaacacattgcgagagattggtctggtggatgaaaaaattgtanagttggcatcttttgtgatattggagcagaagttttttgaattgttgcacgaggaaaaagttatggatgctctgaggacactgaggggcgagatctcacctctttgcataaacaatgatagagtccatcagctttcgtttttcattatatcaccttctcagcaggttcttactggggtatcaggtcaaggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="29541" stop="26118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29241" g_stop="29014" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29013" i_stop="27074" i_length="1940">
            <donor d_prob="0.016" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27073" g_stop="26418" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="884" r_length="656" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E700867" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29241" e_stop="29014"/>
          <exon e_start="27073" e_stop="26418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTTCCTCCCATTTCTCTATTCACAAGTTCTCCATT-ACACAAATACTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGTGTATGTATCCATTTTGATCTGAATCTTCAAATTGCTTTATGGGTATTGCAGATTCTTTTCTAATCTTTTGTTGATTTTCTGGTAATCTTTCTTTTCTTTGCTTGTCTCTTACGGAAATGTTTTCTGGGTTTGGTTTGATTCTTGTTCTTGATTTTGTTTGTTGGATTTGTTGAATGGTGTTAATGGATTATCTAAAGTTTGATTTTTTTCTAGTTGGGTTTTGAGTGGTTATTGTAGTATATGCTTGTTTTACAAAAGAGAATGGTTTGCAGAAGTTAAGTTTAGCCTATTTACAACTTAAGTACTAATTAGACGGCAAATGCATTTTGAGTTGAATTACCTTTTGCAGAAGTTTACTTAACAGCAGATACATTTACTAACTTAGTTTGTTATTGGATGCTTTTAGTACCGATTGGATCTTTTCATCAAGATCCCTAGTTTGTGCTGTTGGTGAGAGGTATGGTTTAGATTTGCTGTAAATGTGATTGCATTGGAGTGAAATTATCCTTAATTAGTTCATCTTTGATCATAACAAGTTTAAGAGGCTTAAGACTCATCACTATCTTGTGCTATATGTGTATCTTACTATCATACTTGATCATAATAGGTTTGAGGGGGTTCAGTGGGTGCGTGCTACATCATATTTTGCTAGGGGAGGATTGACTTTGTTTCCAGGGTCGTGATATGATCGATCCATGATCCTGTAGAGAAATAGGGTAAACCTTGTTTGTTATTTGGAAAGTGTGATTAACTTGTGTAGTCAGCTCTTGCAAATGTTTGCAACTAACGAGTGAAATTCTGTTGATTGCTTCAGCTTTATTGTGGCCCAATTTATGGCCTTCAGTCATATTCACATATTAGTAAGAAGATTAGATTCTTCTCATTAGTGGCCAGGCTATTTTGGATGAACTATTATGTCGATAGTGGTAACATTGATGTGTTTTCTTTTCTATTGAATTTCGAATATCAAAGATCAGACATATCTTAGAGTTGAATTTATGGATTCATTTACAGTAATTACGTAGCTTGAGTGTTGATTAATGTTGAACTTGCGTGTTACCGTGCACACTGGTAAAACATTTGCATTTTGTGTGATCTCCTTCTGGCAGGAATTGAAACTTCTCTGTCTGCATCAGTTCTCTTATTTGGGAGGATTATTATTAGCGGGTAATGCTGTTTGATCAGGAGGCTGGTATTGAGAAGACCGAATAGGTTATTCAAAGAAAATGGTAGCTAATGCTCCTTCGATGTTAATGTGGACTTAGCGAGAGCAATGTACTAGGCAGGCTGTTCAATGGTTCGATAACTAGTAGTATTAATTTGTGATGTCTATTTAGGTCGTATGTTCATTAAGCTTTTTAAATTCAGGCTGACACCGTCCTACCCTTCCTACCTCTCCTTTCTTGAATAATTGTTAAAAAGGAAGTTTTGGTGGAGCCCTTTATGTATAGAGTTTCAACTTAAGCAAGCAAAACCGATTTGTAGCATAAGAAATTATTGGTGTCTGGCATCAGGTCCAAAATTACTGGTTGCACTTCGTGATGGTATTTTATCTGGTAATTCTGAATAATCTGTCTGAGGTGTTGCTGTATTTGTTGCGAATCTGTCCAAGCAATTTTACTTTCATATATATTATTGGGTACTTCAGCATGTGATATTAGTATCAGGCGATGCTCTTGCTAAATGCTGGACAATTTTCATCAATAAAATGATTACGTATAAAAGAAGATTAGCCTATACTTTTGTTATTTGCAGTTTTTTTCCTTAAACTCTCTGTTTTGCTCATTGTCTCATTACTATCGTTCTCACTTTCTAATCGTAGATCATTGAAAGTGGATCCTGCAGATTACCTTCTTTCTCTTTTTTCTGTTTCTATTTTTATTAGTTTTATGTTATTTCCTTTTCTGCTGTTACTTAGAGTCTCCATTTATTAATTGCAGGATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATGAGGTTGTTGGTACAAAAGGAGTTGTCAAGAAAGTTGAATTTGTTCGGATTATAACTGAGGCATTAGATTCTCTTGGTTACAAAAAGACTCGGGCCTTACTAGAGGAAGAGTCAGGGATACCCTTGCACACTTCCGTCGTAAATTTGTTTATGCAGCAAATTCTTGATGGTAAATGGGATGAAAGTTTAAACACATTGCGAAATATTGGTCTGGTGGATGAAAAAATTGTAAAGTTGGCATCTTTTGTGATATTGGAGCAGAAGTTTTTTGAATTGTTGCACAAGGAAAAAGTTATGGATGCTCTGAGGACACTGAGGGGCGAGATCTCACCTCTTTGCATAAACAATGATAGAGTCCATCAGCTTTCGTTTTTCATTATATCACCTTCTCAGCAGGTTCTTACTGGGGTATCAGGTCAAGGCAC</genome_strand>
        <mrna_strand>AACTCTTTCCT-CCATTTCTCTATTCACAAGTTCTCCATTAACACAAATACTCAAATCTCTCTACAGGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAAAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGTGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGCAAGTTGTTCATTGGGTGACGCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATGAGGTTGTTGGTACAAAAGGAGTTGTCAAGAAAGTTGAATTTGTTCGGATTATAACTGAGGCATTAGATTCTCTTGGTTACAAAAAGACTCGGGCCTTACTAGAGGAAGAGTCAGGGATACCCTTGCACACTTCCGTCGTAAATTTGTTTATGCAGCAAATTCTTGATGGTAAATGGGATGAAAGTTTAAACACATTGCGAGAGATTGGTCTGGTGGATGAAAAAATTGTANAGTTGGCATCTTTTGTGATATTGGAGCAGAAGTTTTTTGAATTGTTGCACGAGGAAAAAGTTATGGATGCTCTGAGGACACTGAGGGGCGAGATCTCACCTCTTTGCATAAACAATGATAGAGTCCATCAGCTTTCGTTTTTCATTATATCACCTTCTCAGCAGGTTCTTACTGGGGTATCAGGTCAAGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E689396" ref_strand="+" ref_description="SGN-E689396 [t3_tus_84_I17]">
      <seq>gccaaacaactctttcctccatttctctattcacaagttctccattaacacaaatactcaaatctctctacaagattcttactctcaacaatcaatcatataccttttttagctttcaatcgactgcttgtttacccacctaatctactagtcttagcttaccgacaaacgagagggaataaaagaatacaatttgggataaaaccatttgcgatttgctggtttttcaatcagtgatttaggcctactattccaacttttcagttttgtcttcctcctgctgttatatatgggctgacgcgtttgtttcatgggagctgaggacgatgatgaaccaccatcaaaacgtgtgaaggtatcctccagtcaattggtagatatttctgacaggacatttgttagagatcctgtaagttgttcattgggtgactcgatggctcgacccctgactcttcaaggggacgatgaggttgttggtacaaaaggagttgtcaagaaagttgaatttgttcggattataactgaggcattagattctcttggttacaaaaagactcgggccttactagaggaagagtcagggatacccttgcacacttccgtcgtaaatttgtttatgcagcaaattcttgatggtaaatgggatgaaagtttaaacacattgcgaaatattggtctggtggatgaaaaaattgtaaagttggcattcttttgtgatattggagcagaagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="29546" stop="26275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29248" g_stop="29014" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29013" i_stop="27074" i_length="1940">
            <donor d_prob="0.016" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27073" g_stop="26575" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="735" r_length="500" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E689396" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29248" e_stop="29014"/>
          <exon e_start="27073" e_stop="26575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAACAACTCTTTCCTCCCATTTCTCTATTCACAAGTTCTCCATT-ACACAAATACTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGTGTATGTATCCATTTTGATCTGAATCTTCAAATTGCTTTATGGGTATTGCAGATTCTTTTCTAATCTTTTGTTGATTTTCTGGTAATCTTTCTTTTCTTTGCTTGTCTCTTACGGAAATGTTTTCTGGGTTTGGTTTGATTCTTGTTCTTGATTTTGTTTGTTGGATTTGTTGAATGGTGTTAATGGATTATCTAAAGTTTGATTTTTTTCTAGTTGGGTTTTGAGTGGTTATTGTAGTATATGCTTGTTTTACAAAAGAGAATGGTTTGCAGAAGTTAAGTTTAGCCTATTTACAACTTAAGTACTAATTAGACGGCAAATGCATTTTGAGTTGAATTACCTTTTGCAGAAGTTTACTTAACAGCAGATACATTTACTAACTTAGTTTGTTATTGGATGCTTTTAGTACCGATTGGATCTTTTCATCAAGATCCCTAGTTTGTGCTGTTGGTGAGAGGTATGGTTTAGATTTGCTGTAAATGTGATTGCATTGGAGTGAAATTATCCTTAATTAGTTCATCTTTGATCATAACAAGTTTAAGAGGCTTAAGACTCATCACTATCTTGTGCTATATGTGTATCTTACTATCATACTTGATCATAATAGGTTTGAGGGGGTTCAGTGGGTGCGTGCTACATCATATTTTGCTAGGGGAGGATTGACTTTGTTTCCAGGGTCGTGATATGATCGATCCATGATCCTGTAGAGAAATAGGGTAAACCTTGTTTGTTATTTGGAAAGTGTGATTAACTTGTGTAGTCAGCTCTTGCAAATGTTTGCAACTAACGAGTGAAATTCTGTTGATTGCTTCAGCTTTATTGTGGCCCAATTTATGGCCTTCAGTCATATTCACATATTAGTAAGAAGATTAGATTCTTCTCATTAGTGGCCAGGCTATTTTGGATGAACTATTATGTCGATAGTGGTAACATTGATGTGTTTTCTTTTCTATTGAATTTCGAATATCAAAGATCAGACATATCTTAGAGTTGAATTTATGGATTCATTTACAGTAATTACGTAGCTTGAGTGTTGATTAATGTTGAACTTGCGTGTTACCGTGCACACTGGTAAAACATTTGCATTTTGTGTGATCTCCTTCTGGCAGGAATTGAAACTTCTCTGTCTGCATCAGTTCTCTTATTTGGGAGGATTATTATTAGCGGGTAATGCTGTTTGATCAGGAGGCTGGTATTGAGAAGACCGAATAGGTTATTCAAAGAAAATGGTAGCTAATGCTCCTTCGATGTTAATGTGGACTTAGCGAGAGCAATGTACTAGGCAGGCTGTTCAATGGTTCGATAACTAGTAGTATTAATTTGTGATGTCTATTTAGGTCGTATGTTCATTAAGCTTTTTAAATTCAGGCTGACACCGTCCTACCCTTCCTACCTCTCCTTTCTTGAATAATTGTTAAAAAGGAAGTTTTGGTGGAGCCCTTTATGTATAGAGTTTCAACTTAAGCAAGCAAAACCGATTTGTAGCATAAGAAATTATTGGTGTCTGGCATCAGGTCCAAAATTACTGGTTGCACTTCGTGATGGTATTTTATCTGGTAATTCTGAATAATCTGTCTGAGGTGTTGCTGTATTTGTTGCGAATCTGTCCAAGCAATTTTACTTTCATATATATTATTGGGTACTTCAGCATGTGATATTAGTATCAGGCGATGCTCTTGCTAAATGCTGGACAATTTTCATCAATAAAATGATTACGTATAAAAGAAGATTAGCCTATACTTTTGTTATTTGCAGTTTTTTTCCTTAAACTCTCTGTTTTGCTCATTGTCTCATTACTATCGTTCTCACTTTCTAATCGTAGATCATTGAAAGTGGATCCTGCAGATTACCTTCTTTCTCTTTTTTCTGTTTCTATTTTTATTAGTTTTATGTTATTTCCTTTTCTGCTGTTACTTAGAGTCTCCATTTATTAATTGCAGGATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATGAGGTTGTTGGTACAAAAGGAGTTGTCAAGAAAGTTGAATTTGTTCGGATTATAACTGAGGCATTAGATTCTCTTGGTTACAAAAAGACTCGGGCCTTACTAGAGGAAGAGTCAGGGATACCCTTGCACACTTCCGTCGTAAATTTGTTTATGCAGCAAATTCTTGATGGTAAATGGGATGAAAGTTTAAACACATTGCGAAATATTGGTCTGGTGGATGAAAAAATTGTAAAGTTGGCA-TCTTTTGTGATATTGGAGCAGAAGTTTT</genome_strand>
        <mrna_strand>GCCAAACAACTCTTTCCT-CCATTTCTCTATTCACAAGTTCTCCATTAACACAAATACTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATGAGGTTGTTGGTACAAAAGGAGTTGTCAAGAAAGTTGAATTTGTTCGGATTATAACTGAGGCATTAGATTCTCTTGGTTACAAAAAGACTCGGGCCTTACTAGAGGAAGAGTCAGGGATACCCTTGCACACTTCCGTCGTAAATTTGTTTATGCAGCAAATTCTTGATGGTAAATGGGATGAAAGTTTAAACACATTGCGAAATATTGGTCTGGTGGATGAAAAAATTGTAAAGTTGGCATTCTTTTGTGATATTGGAGCAGAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E333282" ref_strand="+" ref_description="SGN-E333282 [cTOD-20-K21]">
      <seq>ccaaacaactctttcctccatttctctattcacaagttctccattaacacaaatactcaaatctctctacaagattcttactctcaacaatcaatcatataccttttttagctttcaatcgactgcttgtttacccacctaatctactagtcttagcttaccgacaaacgagagggaataaaagaatacaatttgggataaaaccatttgcgatttgctggtttttcaatcagtgatttaggcctactattccaacttttcagttttgtcttcctcctgctgttatatatgggctgacgcgtttgtttcatgggagctgaggacgatgatgaaccaccatcaaaacgtgtgaaggtatcctccagtcaattggtagatatttctgacaggacatttgttagagatcctgtaagttgttcattgggtgactcgatggctcgacccctgactcttcaaggggacgatgaggttgttggtacaaaaggagttgtcaagaaagttgaatttgttcggattataactgaggcattagattctcttggttacaaaaagactcgggccttactagaggaagagtcagggatacccttgcacacttccgtcgtaaatttgtttatgcagcaaattcttgatggtaaatgggatgaaagtttaaacacattgcgaaatattggtctggtggatgaaaaaattgtaaagttggcatcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="29546" stop="26296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29247" g_stop="29014" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29013" i_stop="27074" i_length="1940">
            <donor d_prob="0.016" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27073" g_stop="26596" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="712" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E333282" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29247" e_stop="29014"/>
          <exon e_start="27073" e_stop="26596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACAACTCTTTCCTCCCATTTCTCTATTCACAAGTTCTCCATT-ACACAAATACTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGTGTATGTATCCATTTTGATCTGAATCTTCAAATTGCTTTATGGGTATTGCAGATTCTTTTCTAATCTTTTGTTGATTTTCTGGTAATCTTTCTTTTCTTTGCTTGTCTCTTACGGAAATGTTTTCTGGGTTTGGTTTGATTCTTGTTCTTGATTTTGTTTGTTGGATTTGTTGAATGGTGTTAATGGATTATCTAAAGTTTGATTTTTTTCTAGTTGGGTTTTGAGTGGTTATTGTAGTATATGCTTGTTTTACAAAAGAGAATGGTTTGCAGAAGTTAAGTTTAGCCTATTTACAACTTAAGTACTAATTAGACGGCAAATGCATTTTGAGTTGAATTACCTTTTGCAGAAGTTTACTTAACAGCAGATACATTTACTAACTTAGTTTGTTATTGGATGCTTTTAGTACCGATTGGATCTTTTCATCAAGATCCCTAGTTTGTGCTGTTGGTGAGAGGTATGGTTTAGATTTGCTGTAAATGTGATTGCATTGGAGTGAAATTATCCTTAATTAGTTCATCTTTGATCATAACAAGTTTAAGAGGCTTAAGACTCATCACTATCTTGTGCTATATGTGTATCTTACTATCATACTTGATCATAATAGGTTTGAGGGGGTTCAGTGGGTGCGTGCTACATCATATTTTGCTAGGGGAGGATTGACTTTGTTTCCAGGGTCGTGATATGATCGATCCATGATCCTGTAGAGAAATAGGGTAAACCTTGTTTGTTATTTGGAAAGTGTGATTAACTTGTGTAGTCAGCTCTTGCAAATGTTTGCAACTAACGAGTGAAATTCTGTTGATTGCTTCAGCTTTATTGTGGCCCAATTTATGGCCTTCAGTCATATTCACATATTAGTAAGAAGATTAGATTCTTCTCATTAGTGGCCAGGCTATTTTGGATGAACTATTATGTCGATAGTGGTAACATTGATGTGTTTTCTTTTCTATTGAATTTCGAATATCAAAGATCAGACATATCTTAGAGTTGAATTTATGGATTCATTTACAGTAATTACGTAGCTTGAGTGTTGATTAATGTTGAACTTGCGTGTTACCGTGCACACTGGTAAAACATTTGCATTTTGTGTGATCTCCTTCTGGCAGGAATTGAAACTTCTCTGTCTGCATCAGTTCTCTTATTTGGGAGGATTATTATTAGCGGGTAATGCTGTTTGATCAGGAGGCTGGTATTGAGAAGACCGAATAGGTTATTCAAAGAAAATGGTAGCTAATGCTCCTTCGATGTTAATGTGGACTTAGCGAGAGCAATGTACTAGGCAGGCTGTTCAATGGTTCGATAACTAGTAGTATTAATTTGTGATGTCTATTTAGGTCGTATGTTCATTAAGCTTTTTAAATTCAGGCTGACACCGTCCTACCCTTCCTACCTCTCCTTTCTTGAATAATTGTTAAAAAGGAAGTTTTGGTGGAGCCCTTTATGTATAGAGTTTCAACTTAAGCAAGCAAAACCGATTTGTAGCATAAGAAATTATTGGTGTCTGGCATCAGGTCCAAAATTACTGGTTGCACTTCGTGATGGTATTTTATCTGGTAATTCTGAATAATCTGTCTGAGGTGTTGCTGTATTTGTTGCGAATCTGTCCAAGCAATTTTACTTTCATATATATTATTGGGTACTTCAGCATGTGATATTAGTATCAGGCGATGCTCTTGCTAAATGCTGGACAATTTTCATCAATAAAATGATTACGTATAAAAGAAGATTAGCCTATACTTTTGTTATTTGCAGTTTTTTTCCTTAAACTCTCTGTTTTGCTCATTGTCTCATTACTATCGTTCTCACTTTCTAATCGTAGATCATTGAAAGTGGATCCTGCAGATTACCTTCTTTCTCTTTTTTCTGTTTCTATTTTTATTAGTTTTATGTTATTTCCTTTTCTGCTGTTACTTAGAGTCTCCATTTATTAATTGCAGGATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATGAGGTTGTTGGTACAAAAGGAGTTGTCAAGAAAGTTGAATTTGTTCGGATTATAACTGAGGCATTAGATTCTCTTGGTTACAAAAAGACTCGGGCCTTACTAGAGGAAGAGTCAGGGATACCCTTGCACACTTCCGTCGTAAATTTGTTTATGCAGCAAATTCTTGATGGTAAATGGGATGAAAGTTTAAACACATTGCGAAATATTGGTCTGGTGGATGAAAAAATTGTAAAGTTGGCATCTTTTG</genome_strand>
        <mrna_strand>CCAAACAACTCTTTCCT-CCATTTCTCTATTCACAAGTTCTCCATTAACACAAATACTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATGAGGTTGTTGGTACAAAAGGAGTTGTCAAGAAAGTTGAATTTGTTCGGATTATAACTGAGGCATTAGATTCTCTTGGTTACAAAAAGACTCGGGCCTTACTAGAGGAAGAGTCAGGGATACCCTTGCACACTTCCGTCGTAAATTTGTTTATGCAGCAAATTCTTGATGGTAAATGGGATGAAAGTTTAAACACATTGCGAAATATTGGTCTGGTGGATGAAAAAATTGTAAAGTTGGCATCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E331285" ref_strand="+" ref_description="SGN-E331285 [cTOD-6-B20]">
      <seq>caactctttcctccatttctctattcacaagttctccattaacacaaatgctcaaatctctctacaagattcttactctcaacaatcaatcatataccttttttagctttcaatcgactgcttgtttacccacctaatctactagtcttagcttaccgacaaacgagagggaataaaagaatacaatttgggataaaaccatttgcgatttgctggtttttcaatcagtgtatgtatccattttgatctgaatcttcaaattgctttatgggtattgcagattcttttctaatcttttgttgattttctggatttaggcctactattccaacttttcagttttgtcttcctcctgctgttatatatgggctgacgcgtttgtttcatgggagctgaggacgatgatgaaccaccatcaaaacgtgtgaaggtatcctccagtcaattggtagatatttctgacaggacatttgttagagatcctgtaagttgttcattgggtgactcgatggctcgacccctgactcttcaaggggacgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="29542" stop="26542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29242" g_stop="28933" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28932" i_stop="27074" i_length="1859">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27073" g_stop="26842" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="542" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E331285" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29242" e_stop="28933"/>
          <exon e_start="27073" e_stop="26842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCTTTCCTCCCATTTCTCTATTCACAAGTTCTCCATT-ACACAAATACTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGTGTATGTATCCATTTTGATCTGAATCTTCAAATTGCTTTATGGGTATTGCAGATTCTTTTCTAATCTTTTGTTGATTTTCTGGTAATCTTTCTTTTCTTTGCTTGTCTCTTACGGAAATGTTTTCTGGGTTTGGTTTGATTCTTGTTCTTGATTTTGTTTGTTGGATTTGTTGAATGGTGTTAATGGATTATCTAAAGTTTGATTTTTTTCTAGTTGGGTTTTGAGTGGTTATTGTAGTATATGCTTGTTTTACAAAAGAGAATGGTTTGCAGAAGTTAAGTTTAGCCTATTTACAACTTAAGTACTAATTAGACGGCAAATGCATTTTGAGTTGAATTACCTTTTGCAGAAGTTTACTTAACAGCAGATACATTTACTAACTTAGTTTGTTATTGGATGCTTTTAGTACCGATTGGATCTTTTCATCAAGATCCCTAGTTTGTGCTGTTGGTGAGAGGTATGGTTTAGATTTGCTGTAAATGTGATTGCATTGGAGTGAAATTATCCTTAATTAGTTCATCTTTGATCATAACAAGTTTAAGAGGCTTAAGACTCATCACTATCTTGTGCTATATGTGTATCTTACTATCATACTTGATCATAATAGGTTTGAGGGGGTTCAGTGGGTGCGTGCTACATCATATTTTGCTAGGGGAGGATTGACTTTGTTTCCAGGGTCGTGATATGATCGATCCATGATCCTGTAGAGAAATAGGGTAAACCTTGTTTGTTATTTGGAAAGTGTGATTAACTTGTGTAGTCAGCTCTTGCAAATGTTTGCAACTAACGAGTGAAATTCTGTTGATTGCTTCAGCTTTATTGTGGCCCAATTTATGGCCTTCAGTCATATTCACATATTAGTAAGAAGATTAGATTCTTCTCATTAGTGGCCAGGCTATTTTGGATGAACTATTATGTCGATAGTGGTAACATTGATGTGTTTTCTTTTCTATTGAATTTCGAATATCAAAGATCAGACATATCTTAGAGTTGAATTTATGGATTCATTTACAGTAATTACGTAGCTTGAGTGTTGATTAATGTTGAACTTGCGTGTTACCGTGCACACTGGTAAAACATTTGCATTTTGTGTGATCTCCTTCTGGCAGGAATTGAAACTTCTCTGTCTGCATCAGTTCTCTTATTTGGGAGGATTATTATTAGCGGGTAATGCTGTTTGATCAGGAGGCTGGTATTGAGAAGACCGAATAGGTTATTCAAAGAAAATGGTAGCTAATGCTCCTTCGATGTTAATGTGGACTTAGCGAGAGCAATGTACTAGGCAGGCTGTTCAATGGTTCGATAACTAGTAGTATTAATTTGTGATGTCTATTTAGGTCGTATGTTCATTAAGCTTTTTAAATTCAGGCTGACACCGTCCTACCCTTCCTACCTCTCCTTTCTTGAATAATTGTTAAAAAGGAAGTTTTGGTGGAGCCCTTTATGTATAGAGTTTCAACTTAAGCAAGCAAAACCGATTTGTAGCATAAGAAATTATTGGTGTCTGGCATCAGGTCCAAAATTACTGGTTGCACTTCGTGATGGTATTTTATCTGGTAATTCTGAATAATCTGTCTGAGGTGTTGCTGTATTTGTTGCGAATCTGTCCAAGCAATTTTACTTTCATATATATTATTGGGTACTTCAGCATGTGATATTAGTATCAGGCGATGCTCTTGCTAAATGCTGGACAATTTTCATCAATAAAATGATTACGTATAAAAGAAGATTAGCCTATACTTTTGTTATTTGCAGTTTTTTTCCTTAAACTCTCTGTTTTGCTCATTGTCTCATTACTATCGTTCTCACTTTCTAATCGTAGATCATTGAAAGTGGATCCTGCAGATTACCTTCTTTCTCTTTTTTCTGTTTCTATTTTTATTAGTTTTATGTTATTTCCTTTTCTGCTGTTACTTAGAGTCTCCATTTATTAATTGCAGGATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATG</genome_strand>
        <mrna_strand>CAACTCTTTCCT-CCATTTCTCTATTCACAAGTTCTCCATTAACACAAATGCTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGTGTATGTATCCATTTTGATCTGAATCTTCAAATTGCTTTATGGGTATTGCAGATTCTTTTCTAATCTTTTGTTGATTTTCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E350034" ref_strand="+" ref_description="SGN-E350034 [cTOS-4-M10]">
      <seq>ggaaatgctgaagatatggttaagagaaacaagaagggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgctaatgttgcttcaacctttatgaatctgcacggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaagaagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcaacagaggttgacattctaccacgtggcctgtaatgatgctatgatggaagagtgtgatatactactgttcattttaaaccctgttgtctttcaaggcataacttcgagtttttgttttttggtgaacaagaattcttaatctttcactatttgtggcagaaatatattagttgtttgatgctctatatttctgtatctgtcagagaaatagtatggtccagttgaagttgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38234" stop="36415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37934" g_stop="37836" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37835" i_stop="37217" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37216" g_stop="36719" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="597" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="600" polyA_stop="613"/>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E350034" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37934" e_stop="37836"/>
          <exon e_start="37216" e_stop="36719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTATATTTCTGTATCTGTCAGAGAAATAGTATGGTCCAGTTGAAGTT</genome_strand>
        <mrna_strand>GGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTATATTTCTGTATCTGTCAGAGAAATAGTATGGTCCAGTTGAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E350065" ref_strand="+" ref_description="SGN-E350065 [cTOS-4-L11]">
      <seq>ggaaatgctgaagatatggttaagagaaacaagaagggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgctaatgttgcttcaacctttatgaatctgcacggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaagaagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcaacagaggttgacattctaccacgtggcctgtaatgatgctatgatggaagagtgtgatatactactgttcattttaaaccctgttgtctttcaaggcataacttcgagtttttgttttttggtgaacaagaattcttaatctttcactatttgtggcagaaatatattagttgtttgatgctctatatttctgtatctgtcagagaaatagtatggtccagttgaagttgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38234" stop="36415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37934" g_stop="37836" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37835" i_stop="37217" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37216" g_stop="36719" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="597" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="600" polyA_stop="612"/>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E350065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37934" e_stop="37836"/>
          <exon e_start="37216" e_stop="36719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTATATTTCTGTATCTGTCAGAGAAATAGTATGGTCCAGTTGAAGTT</genome_strand>
        <mrna_strand>GGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTATATTTCTGTATCTGTCAGAGAAATAGTATGGTCCAGTTGAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E351111" ref_strand="+" ref_description="SGN-E351111 [cTOS-6-D22]">
      <seq>cagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgctaatgttgcttcaacctttatgaatctgcacggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaagaagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcaacagaggttgacattctaccacgtggcctgtaatgatgctatgatggaagagtgtgatatactactgttcattttaaaccctgttgtctttcaaggcataacttcgagtttttgttttttggtgaacaagaattcttaatctttcactatttgtggcagaaatatattagttgtttgatgctctatatttctgtatctgtcagagaaatagtatggtccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38165" stop="36428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37865" g_stop="37836" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37835" i_stop="37217" i_length="619">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37216" g_stop="36728" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="519" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="520" polyA_stop="529"/>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E351111" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37865" e_stop="37836"/>
          <exon e_start="37216" e_stop="36728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTATATTTCTGTATCTGTCAGAGAAATAGTATGGTCCA</genome_strand>
        <mrna_strand>CAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTATATTTCTGTATCTGTCAGAGAAATAGTATGGTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E354353" ref_strand="+" ref_description="SGN-E354353 [cTOS-17-G21]">
      <seq>tcaagatgatccttgatgctattgagcaagtgggtggaattttccttgttactgctgaccatggaaatgctgaagatatggttaagagaaacaagaagggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgctaatgttgcttcaacctttatgaatctgcacggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaagaagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcaacagaggttgacattctaccacgtggcctgtaatgatgctatgatggaagagtgtgatatactactgttcattttaaaccctgttgtctttcaaggcataacttcgagtttttgttttttggtgaacaagaattcttaatctttcactatttgtggcagaaatatattagttgtttgatgctctaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38293" stop="36461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37996" g_stop="37836" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37835" i_stop="37217" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37216" g_stop="36756" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="622" r_length="461" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E354353" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37996" e_stop="37836"/>
          <exon e_start="37216" e_stop="36756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTATATTTCT</genome_strand>
        <mrna_strand>TCAAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E356534" ref_strand="+" ref_description="SGN-E356534 [cTOS-21-O15]">
      <seq>agaaacaagaagggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgctaatgttgcttcaacctttatgaatctgcacggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaagaagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcaacagaggttgacattctaccacgtggcctgtaatgatgctatgatggaagagtgtgatatactactgttcatttttaaccctgttgtctttcaaggcataacttcgagtttttgtttttttggtgaacnagaattcttaatctttcactatttgtggcagaaatatattagttgtttgatgctcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38210" stop="36461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37910" g_stop="37836" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37835" i_stop="37217" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37216" g_stop="36758" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="535" r_length="460" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E356534" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37910" e_stop="37836"/>
          <exon e_start="37216" e_stop="36758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTG-TTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTATATTT</genome_strand>
        <mrna_strand>AGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTTAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTTGGTGAACNAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E701184" ref_strand="+" ref_description="SGN-E701184 [FA15BA09]">
      <seq>agagtatgtggaaattccaagtgacagtgggattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgaccaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgctattgagcaagtgggtggaattttccttgttactgctgaccatggaaatgctgaagatatggttaagagaaacaagaagggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgcaaatgttgcttcaacctttatgaatctgcatggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaagaagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcaacagaggttgacattctaccacgtggcctgtaatgatgctatgatggaagagtgtgatatactgttcattttaaaccctgttgtctttcaaggcataacttcgagtttttgttttttggtgaacaagaattcttaatctttcactatttgtggcagaaatatattagttgtttgatgctctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="39096" stop="36461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38796" g_stop="38679" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38678" i_stop="38591" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38590" g_stop="38495" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="214" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38494" i_stop="37992" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37991" g_stop="37836" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="370" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37835" i_stop="37217" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37216" g_stop="36764" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="820" r_length="450" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="821" polyA_stop="831"/>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E701184" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38796" e_stop="38679"/>
          <exon e_start="38590" e_stop="38495"/>
          <exon e_start="37991" e_stop="37836"/>
          <exon e_start="37216" e_stop="36764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCT</genome_strand>
        <mrna_strand>AGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGACCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCAAATGTTGCTTCAACCTTTATGAATCTGCATGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTG--ATA-TACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E714803" ref_strand="+" ref_description="SGN-E714803 [FB12BH09]">
      <seq>atggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgctattgagcaagtgggtggaattttccttgttactgctgaccatggaaatgctgaagatatggttaagagaaacaagaagggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgcaaatgttgcttcaacctttatgaatctgcatggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaagaagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcaacagaggttgacattctaccacgtggcctgtaatgatgctatgatggaagagtgtgatatactgttcattttaaaccctgttgtctttcaaggcataacttcgagtttttgttttttggtgaacaagaattcttaatctttcactatttgtggcagaaatatattagttgtttgatgctctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38863" stop="36461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38563" g_stop="38495" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38494" i_stop="37992" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37991" g_stop="37836" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="225" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37835" i_stop="37217" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37216" g_stop="36764" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="675" r_length="450" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="676" polyA_stop="689"/>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E714803" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38563" e_stop="38495"/>
          <exon e_start="37991" e_stop="37836"/>
          <exon e_start="37216" e_stop="36764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCT</genome_strand>
        <mrna_strand>ATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCAAATGTTGCTTCAACCTTTATGAATCTGCATGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTG--ATA-TACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E351195" ref_strand="+" ref_description="SGN-E351195 [cTOS-6-C20]">
      <seq>ccttgttactgctgaccatggaaatgctgaagatatggttaagagaaacaagaagggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgctaatgttgcttcaacctttatgaatctgcacggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaagaagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcaacagaggttgacattctaccacgtggcctgtaatgatgctatgatggaagagtgtgatatactactgttcattttaaaccctgttgtctttcaaggcataacttcgagtttttgttttttggtgaacaagaattcttaatctttcactatttgtggcagaaatatattagttgtttgatgctctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38253" stop="36461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37953" g_stop="37836" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37835" i_stop="37217" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37216" g_stop="36764" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="571" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="572" polyA_stop="587"/>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E351195" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37953" e_stop="37836"/>
          <exon e_start="37216" e_stop="36764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCT</genome_strand>
        <mrna_strand>CCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E299673" ref_strand="-" ref_description="SGN-E299673 [cLEW-1-M13]">
      <seq>ttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgctaatgttgcttcaacctttatgaatctgcacggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaagaagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcaacagaggttgacattctaccacgtggcctgtaatgatgctatgatggaagagtgtgatatactactgttcattttaaaccctgttgtctttcaaggcataacttcgagtttttgttttttggtgaacaagaattcttaatctttcactatttgtggcagaaataaaatagttgtttaatgctctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38185" stop="36461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37885" g_stop="37836" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37835" i_stop="37217" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37216" g_stop="36764" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="503" r_length="453" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="505" polyA_stop="537"/>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E299673" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299673" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37885" e_stop="37836"/>
          <exon e_start="37216" e_stop="36764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCT</genome_strand>
        <mrna_strand>TTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATAAAATAGTTGTTTAATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E714366" ref_strand="+" ref_description="SGN-E714366 [FB11BA06]">
      <seq>gttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgctaatgttgcttcaacctttatgaatctgcacggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaagaagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcaacagaggttgacattctaccacgtggcctgtaatgatgctatgatggaagagtgtgatatactactgttcattttaaaccctgttgtctttcaaggcataacttcgagtttttgttttttggtgaacaagaattcttaatctttcactatttgtggcagaaatatattagttgtttgatgctctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="37516" stop="36461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37216" g_stop="36764" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="454" polyA_stop="464"/>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E714366" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37216" e_stop="36764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCT</genome_strand>
        <mrna_strand>GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E242921" ref_strand="+" ref_description="SGN-E242921 [cLED-31-O16]">
      <seq>ctaacagtgatatggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgctattgagcaagtgggtggaattttccttgttactgctgaccatggaaatgctgaagatatggttaagagaaacaagaagggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgctaatgttgcttcaacctttatgaatctgcacggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagttttggcgcaagaagaaagcgataatgaccattctacactttgtttatttgaataagacatttttgagcttatatcaacagaggttgacattctaccacgtggcctgtaatgatgctatgatggaagagtgtgatatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38874" stop="36584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38574" g_stop="38495" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38494" i_stop="37992" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37991" g_stop="37836" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="236" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37835" i_stop="37217" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37216" g_stop="36884" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="569" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E242921" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38574" e_stop="38495"/>
          <exon e_start="37991" e_stop="37836"/>
          <exon e_start="37216" e_stop="36884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTA</genome_strand>
        <mrna_strand>CTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E337088" ref_strand="+" ref_description="SGN-E337088 [cTOE-7-G2]">
      <seq>ttagccacaaatttgatcaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgctattgagcaagtgggtggaattttccttgttactgctgaccatggaaatgctgaagatatggttaagagaaacaagaagggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctggtgtgagattccgcacagatctccccaccggtggacttgctaatgttgcttcaacctttatgaatctgcacggatacgaggcgcctagcgattacgagccaaccttgatcgaagttgtggacaactagataatctcatagaccttagggttgaagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="38998" stop="36721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38698" g_stop="38679" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38678" i_stop="38591" i_length="88">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38590" g_stop="38495" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="116" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38494" i_stop="37992" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37991" g_stop="37836" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="272" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37835" i_stop="37217" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37216" g_stop="37021" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="468" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E337088" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38698" e_stop="38679"/>
          <exon e_start="38590" e_stop="38495"/>
          <exon e_start="37991" e_stop="37836"/>
          <exon e_start="37216" e_stop="37021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTT</genome_strand>
        <mrna_strand>TTAGCCACAAATTTGATCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E273882" ref_strand="+" ref_description="SGN-E273882 [cLEN-7-K4]">
      <seq>tagtgcgcaatggtattcggacttttgcttgtagcgagaccgttaaatttggtcatgtcaccttcttttggaatggaaaccgttctgggtattttgacgagaaattggaagagtatgtggaaattccaagtgacagtgggattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgatcaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgctattgagcaagtgggtggaattttccttgttactgctgaccatggaaatgctgaagatatggttaagagaaacaagaagggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctattgcaattggtggtcctggacttgtacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="39509" stop="36880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39209" g_stop="39176" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39175" i_stop="38872" i_length="304">
            <donor d_prob="0.657" d_score="0.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38871" g_stop="38679" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="227" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38678" i_stop="38591" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38590" g_stop="38495" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="323" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38494" i_stop="37992" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37991" g_stop="37836" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="479" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37835" i_stop="37217" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37216" g_stop="37180" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="516" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E273882" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39209" e_stop="39176"/>
          <exon e_start="38871" e_stop="38679"/>
          <exon e_start="38590" e_stop="38495"/>
          <exon e_start="37991" e_stop="37836"/>
          <exon e_start="37216" e_stop="37180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCTGTAAGTAATTCATTCAAATTTCAGCAATGGACGCCTAAAATTTGTATTACTATTTACTAGTTCTTTGCCAGTATTCTGAGATGTAGAAAGCTGGAAGCATGCATTATTTGTTCTTCCAGCATTTTTTAAGAGCACCTATTTAGTTGTTCCTGAGTGCTACATCAGCTCTAGGTACCTTAGAAACCTATAGGGAGAAAAGAGACGTTAGAATCAGTACAGGGATGGAAAGGAGAAGGGTACTTGTGGTTAGAAAATTTGAGGATTGTGTTCATTCACGAGAACTTCAACTACTAATTTGAGAACATTTGGAACACTATACCAGCTGTGGTTTGGTGGAGTGTTTGCTTGGAAAAAAAGCATCATCGAATTTTTGAAGGCAAAAAGGAAGACGTACTTAGCCTTAAGCAATAGATGCTGTGTTGGACATGCTTAGTCTCTTTCTCAATTTGTAAACCTATGAGCATGTTCTAAGAGCTTTTATTCATCAATTATACTTTTAACATAATCAAAAGTACTAGCCTTAGTATGGAGAGTTGATGGTAATGAATGCTATCCTATTGCTGGTTTGGTTCGTCTAATAATTTCTGAATCGATAATTCTTGTATTTCTTCTACTATAGGTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTG</genome_strand>
        <mrna_strand>TAGTGCGCAATGGTATTCGGACTTTTGCTTGTAG................................................................................................................................................................................................................................................................................................................CGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E706664" ref_strand="+" ref_description="SGN-E706664 [FA30CD03]">
      <seq>aaaaagaggttgggatgcacaagttcttggtgaggctccacaccatttcaaggatcccgttgaggcaattaagaagttgaggcaggaacccaatgccaatgatcaatacttagccccttttgttgttgttgatgataatggaaagcctgttggtcctattttggatggtgatgctgtcgtgactttcaacttcagagcagatcgtatggtcatgcttgcaaaggcccttgaatatgagaatttcgataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgtagcgagaccgttaaatttggtcatgtcaccttcttttggaatggaaaccgttctgggtattttgacgagaaattggaagagtatgtggaaattccaagtgacagtgggattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgatcaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgctattgagcaagtgggtggaattttccttgttactgctgaccatggaaatgctgaagatatggttaagagaaacaagaanggagagccattacttgacaaaaatggaaacattcagattctcacttctcacactctcgaacctgttcctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="39883" stop="37534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39583" g_stop="39176" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39175" i_stop="38872" i_length="304">
            <donor d_prob="0.657" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38871" g_stop="38679" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="601" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38678" i_stop="38591" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38590" g_stop="38495" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="697" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38494" i_stop="37992" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37991" g_stop="37836" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="853" r_length="156" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E706664" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39583" e_stop="39176"/>
          <exon e_start="38871" e_stop="38679"/>
          <exon e_start="38590" e_stop="38495"/>
          <exon e_start="37991" e_stop="37836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT</genome_strand>
        <mrna_strand>AAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAG................................................................................................................................................................................................................................................................................................................CGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAANGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E343634" ref_strand="+" ref_description="SGN-E343634 [cTOF-20-P7]">
      <seq>tcgtgactttcaacttcagagcagatcgtatggtcatgcttgcaaaggcccttgaatatgagaatttcgataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatatagtgcgcaatggtattcggacttttgcttgtagcgagaccgttaaatttggtcatgtcaccttcttttggaatggaaaccgctctgggtattttgacgagaaattggaagagtatgtggaaattccaagtgacagtgggattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgatcaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgctattgagcaagtgggtggaattatccttgttactgctgaccatggaaatgctgaagatatggttaagagaaacaagaagggagagccattacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="39707" stop="37583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39407" g_stop="39176" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39175" i_stop="38872" i_length="304">
            <donor d_prob="0.657" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38871" g_stop="38679" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="425" r_length="193" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38678" i_stop="38591" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38590" g_stop="38495" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="521" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38494" i_stop="37992" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37991" g_stop="37883" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="630" r_length="109" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E343634" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39407" e_stop="39176"/>
          <exon e_start="38871" e_stop="38679"/>
          <exon e_start="38590" e_stop="38495"/>
          <exon e_start="37991" e_stop="37883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTG</genome_strand>
        <mrna_strand>TCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATATAGTGCGCAATGGTATTCGGACTTTTGCTTGTAG................................................................................................................................................................................................................................................................................................................CGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGCTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTATCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E728425" ref_strand="+" ref_description="SGN-E728425 [LA17DB03]">
      <seq>ccattttggatggtgatgctgttgtgactttcaacttcagagcagatcgtatggccatgcttgcaaaggcccttgaatatgagaatttcgataaatttgatcgtgtacgagtccctacaatccattatgctggtatgctccaatatgacggtaaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgcagcgagactgttaaatttggtcatgtcaccttctgttggaatggaaaccgttctggatattttgacgagaaattggaagagtatgtggaaattccgagtgacagtggaattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgaccaggcacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcagagcaacaattgaagcttgcaggctgccgatgatggtgtcaagatgatccttgatgctattgagcaagtgggaggaattttccttgttactgctgaccatggaaatgctgaagatatggttaagagaaacatgaggggagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="39729" stop="37592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39428" g_stop="39176" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39175" i_stop="38872" i_length="304">
            <donor d_prob="0.657" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38871" g_stop="38679" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="446" r_length="193" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38678" i_stop="38591" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38590" g_stop="38495" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="541" r_length="95" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38494" i_stop="37992" i_length="503">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37991" g_stop="37892" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="641" r_length="100" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E728425" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39428" e_stop="39176"/>
          <exon e_start="38871" e_stop="38679"/>
          <exon e_start="38590" e_stop="38495"/>
          <exon e_start="37991" e_stop="37892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGC</genome_strand>
        <mrna_strand>CCATTTTGGATGGTGATGCTGTTGTGACTTTCAACTTCAGAGCAGATCGTATGGCCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTACAATCCATTATGCTGGTATGCTCCAATATGACGGTAAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGCAG................................................................................................................................................................................................................................................................................................................CGAGACTGTTAAATTTGGTCATGTCACCTTCTGTTGGAATGGAAACCGTTCTGGATATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCGAGTGACAGTGGAATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGACCAG........................................................................................GCACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAGAGCAACAATTGAAGCTTGC-AGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAGCAAGTGGGAGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACATGAGGGGAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E335993" ref_strand="+" ref_description="SGN-E335993 [cTOE-6-L9]">
      <seq>tgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgtagcgagaccgttaaatttggtcatgtcaccttcttttggaatggaaaccgttctgggtattttgacgagaaattggaagagtatgtggaaattccaagtgacagtgggattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgatcaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgctattgagcaagtgggtggaattttcctttgtactgctgaccatggaaatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="39532" stop="37625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39232" g_stop="39176" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39175" i_stop="38872" i_length="304">
            <donor d_prob="0.657" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38871" g_stop="38679" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="250" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38678" i_stop="38591" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38590" g_stop="38495" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="346" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38494" i_stop="37992" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37991" g_stop="37925" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="413" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E335993" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39232" e_stop="39176"/>
          <exon e_start="38871" e_stop="38679"/>
          <exon e_start="38590" e_stop="38495"/>
          <exon e_start="37991" e_stop="37925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTG</genome_strand>
        <mrna_strand>TGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAG................................................................................................................................................................................................................................................................................................................CGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTTGTACTGCTGACCATGGAAATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E704809" ref_strand="+" ref_description="SGN-E704809 [FA25BC11]">
      <seq>cccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgttatgagaatgactgggatgtcgtaaaaagaggttgggatgcacaagttcttggtgaggctccacaccatttcaaggatcccgttgaggcaattaagaagttgaggcaggaacccaataccaatgatcaatacttagccccttttgttattgttgatgataatggaaagcctgttggtcctattttggatggtgatgctgttgtgactttcaacttcagagcagatcgtatggtcatgcttgcaaaggcccttgaatatgagaatttcgataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgcagcgagactgttaaatttggtcatgtcaccttcttttggaatggaaaccgttctgggtattttgacgagaaattggaagagtatgtggaaattccaagtgacagtgggattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttacccacaaatttgaccaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgctattgagcaagtgggtggaaattttccttgttactgctgaccatggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41152" stop="37628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40852" g_stop="40800" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40799" i_stop="39601" i_length="1199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39600" g_stop="39176" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="478" r_length="425" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39175" i_stop="38872" i_length="304">
            <donor d_prob="0.657" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38871" g_stop="38679" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="671" r_length="193" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38678" i_stop="38591" i_length="88">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38590" g_stop="38495" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="767" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38494" i_stop="37992" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37991" g_stop="37928" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="832" r_length="65" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E704809" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40852" e_stop="40800"/>
          <exon e_start="39600" e_stop="39176"/>
          <exon e_start="38871" e_stop="38679"/>
          <exon e_start="38590" e_stop="38495"/>
          <exon e_start="37991" e_stop="37928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAGGTAAATTTGTGGCTTTTAGATATGCACCATGTTAGATTTTCTTTTCAATAATGTTGGCTCCTGCACCTAATACTGTCGGAAACTTCTAATGCCCCACATAAAGCATAGAGCAGCCTTCATTTCAGTAATCCATTGACTTGTTTGGTTAATATTATTTTGATTGAATTTCGTCTAGTTATATTTTCTTCGTCTTGGCTGGGTATATCTTTGATGTGGAGTAAGATTATTGGATTAGTTCTTTGATTTGATGCTGTCTGCTGCCTCTTGTCACTGTCTGCACTCTGCTGTCATAATTTGTTTGTTAAGAAGTAATTCGATTCATCACTCTCCAATCTTAGCTTTGTAGTTTGTTTTTTCTACCCCTTCCACTATTTCTGATATCAACATTTCATCTTTGTCATCAACTGTTGTCTCCCAAAGAAATTGGGGCTAACTCAATTTCGAAAGCTAGCTCATGAAGTTGATCAAAAACATAAAGTTAGCTCATGAAGTGAGGAAAAGTACGACTTAAAAGATTACAACCCATTCCCTCACCTGATGTGGGACATTCAGACACCCGGTCCGCTAGGTCTAAACAACTAGAGCTTGAATAACACATATTGGAGGCTCAACATTGAATAACCAAACAGTAGGATGGATCTTGCTTTATACTACACAATGTGATAAGAGATGAATATGGGAATTCTGAGCTTGAATATCCCTGAAGGTATCTTGGTTTAGATAGTGGTGTATACGAAGGTTGGATAGCATCAGAACAAACATCATAGGATCCTCTAATATACTAACGATCTCCCTAACTTATCTAAGTGATATATACAGTAACATCCTCAATTACAGTTTTTTACATAATAATATTCTTGAATAACACCGTAAACACATAGCTGCTTATCAAAAACGAAAAAAAGCGGAGTGATGCATATACTTTTGGGGAACCACCATACTACCTTGACATAGATGTCTTCTGTTGTTTGAGATATAATCTGATTCTTATGGAGTGTTTTCTTCGGTTGCTTCTTTTTACTTTGAGCAGATTAATATGGTCTTGTCGACCTGATGCTTCAGGTTTGTGGTATCTTCTATCCTTCCTTCACTACTGTTATTGATTAGTTGTCATACCAATTTCTTTGCTTTAAAACAAACTATATGTGATTTCAGTTTTCATGCCCTACAGTTAATTATTTGTCATTCCTTTAATGCAGAATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGG-AATTTTCCTTGTTACTGCTGACCATGGAAATG</genome_strand>
        <mrna_strand>CCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATACCAATGATCAATACTTAGCCCCTTTTGTTATTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTTGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGCAG................................................................................................................................................................................................................................................................................................................CGAGACTGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTACCCACAAATTTGACCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAGCAAGTGGGTGGAAATTTTCCTTGTTACTGCTGACCATGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E266363" ref_strand="+" ref_description="SGN-E266363 [cLEI-3-M7]">
      <seq>ttgcaaaggcccttgaatatgagaatttcgataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgtagcgagaccgttaaatttggtcatgtcaccttcttttggaatggaaaccgttctgggtattttgacgagaaattggaagagtatgtggaaattccaagtgacagtgggattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgatcaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgctattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="39668" stop="37671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39368" g_stop="39176" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39175" i_stop="38872" i_length="304">
            <donor d_prob="0.657" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38871" g_stop="38679" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="386" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38678" i_stop="38591" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38590" g_stop="38495" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="482" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38494" i_stop="37992" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37991" g_stop="37971" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="503" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E266363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39368" e_stop="39176"/>
          <exon e_start="38871" e_stop="38679"/>
          <exon e_start="38590" e_stop="38495"/>
          <exon e_start="37991" e_stop="37971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCTATTGAG</genome_strand>
        <mrna_strand>TTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAG................................................................................................................................................................................................................................................................................................................CGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCTATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E266019" ref_strand="+" ref_description="SGN-E266019 [cLEI-6-J2]">
      <seq>ttgcaaaggcccttgaatatgagaatttcgatggatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgtagcgagaccgttaaatttggtcatgtcaccttcttttggaatggaaaccgttctgggtattttgacgagaaattggaagagtatgtggaaattccaagtgacagtgggattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgatcaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="39668" stop="37677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39368" g_stop="39176" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39175" i_stop="38872" i_length="304">
            <donor d_prob="0.657" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38871" g_stop="38679" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="386" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38678" i_stop="38591" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38590" g_stop="38495" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="482" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38494" i_stop="37992" i_length="503">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37991" g_stop="37977" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="497" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E266019" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39368" e_stop="39176"/>
          <exon e_start="38871" e_stop="38679"/>
          <exon e_start="38590" e_stop="38495"/>
          <exon e_start="37991" e_stop="37977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAGGTAATAGTCCTTCCTTGGATCAATTGTTCCGAGTGTCAAAAAGTCTTTTAGGTCACACCACTGCTTTTTTGTTGAGCTTCATGATTTGGATGAATTGATTTGCATGATGCTTTTCTTTTTTATCAAGATGATTCATGCCTTGAACATTGGAGCATTGAACCAATATAATTTCTTTTACTTGAACTTGAGGCTGAAGCACACATTCCGGGTCATGTTCAGTATTTCTTTTTTTTTTTTGGTTGGGGGGGGGGATTGGGTCAAATTGAAGCTCTACCGAAACTCAAAGTTGCGTTCACTATTAAGACTCAACCCGGAGGGTCAAATTAAGGCTCTACTGAAATTCAATGTTGCATTCACTATTAAGACTCAGTCCTTGACATAATATTTGAAGGTACATCAGAAAACTGTGAAGTGGATGATAATTTTCAGGCGAAATGATGACATCTTCATGCCAACGTATTTTATCAGATATCATTAATGATTGTGACTCATCCTTCTTGCAGATGATCCTTGATGCT</genome_strand>
        <mrna_strand>TTGCAAAGGCCCTTGAATATGAGAATTTCGATGGATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAG................................................................................................................................................................................................................................................................................................................CGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCTTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E343734" ref_strand="+" ref_description="SGN-E343734 [cTOF-20-F20]">
      <seq>gatgtcgtaaaaagaggttgggatgcacaagttcttggtgaggctccacaccatttcaaggatcccgttgaggcaattaagaagttgaggcaggaacccaatgccaatgatcaatacttagccccttttgttgttgttgatgataatggaaagcctgttggtcctattttggatggtgatgctgtcgtgactttcaacttcagagcagatcgtatggtcatgcttgcaaaggcccttgaatatgagaatttcgataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgtagcgagaccgttaaatttggtcatgtcaccttcttttggaatggaaaccgttctgggtattttgacgagaaattggaagagtatgtggaaattccaagtgacagtgggattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgatcaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaagcaacaattgaagcttgcaaggctgccgatgatggtgtcaagatgatccttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="39891" stop="38190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39591" g_stop="39176" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39175" i_stop="38872" i_length="304">
            <donor d_prob="0.657" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38871" g_stop="38679" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="609" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38678" i_stop="38591" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38590" g_stop="38495" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="705" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E343734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39591" e_stop="39176"/>
          <exon e_start="38871" e_stop="38679"/>
          <exon e_start="38590" e_stop="38495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG</genome_strand>
        <mrna_strand>GATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAG................................................................................................................................................................................................................................................................................................................CGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E731560" ref_strand="+" ref_description="SGN-E731560 [LA27CA07]">
      <seq>gagaatgatctatcaaaattacgtggacaaggtgttgatgcccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgatatgagaatgactgggatgtcgtaaaaagaggttgggatgcacaagttcttggtgaggctccacaccatttcatggatcccgttgaggcaattaaaaaattgaggcaggaacccagtgccaatgatcaatacttagccccttttgttgttgttgatgataatggaaagcctgttggtcctattttggatggtgatgctgtcgtgactttcgacttcatagcagatcgtatggtcatgcttgcaaaggcccttgaatatgagaatttccataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctaatgcgcaatggtattcggacttttgcttgtagcgagaccgttaaatttggtcatgtcaccttcttttggaatggaaaccgttctgggtattttgacgagaaattggaagagtatgtggaaattccaagtgacagtgggattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgatcaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaagcaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41192" stop="38229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40892" g_stop="40800" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40799" i_stop="39601" i_length="1199">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39600" g_stop="39176" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="518" r_length="425" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39175" i_stop="38872" i_length="304">
            <donor d_prob="0.657" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38871" g_stop="38679" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="711" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38678" i_stop="38591" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38590" g_stop="38529" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="773" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E731560" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40892" e_stop="40800"/>
          <exon e_start="39600" e_stop="39176"/>
          <exon e_start="38871" e_stop="38679"/>
          <exon e_start="38590" e_stop="38529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAGGTAAATTTGTGGCTTTTAGATATGCACCATGTTAGATTTTCTTTTCAATAATGTTGGCTCCTGCACCTAATACTGTCGGAAACTTCTAATGCCCCACATAAAGCATAGAGCAGCCTTCATTTCAGTAATCCATTGACTTGTTTGGTTAATATTATTTTGATTGAATTTCGTCTAGTTATATTTTCTTCGTCTTGGCTGGGTATATCTTTGATGTGGAGTAAGATTATTGGATTAGTTCTTTGATTTGATGCTGTCTGCTGCCTCTTGTCACTGTCTGCACTCTGCTGTCATAATTTGTTTGTTAAGAAGTAATTCGATTCATCACTCTCCAATCTTAGCTTTGTAGTTTGTTTTTTCTACCCCTTCCACTATTTCTGATATCAACATTTCATCTTTGTCATCAACTGTTGTCTCCCAAAGAAATTGGGGCTAACTCAATTTCGAAAGCTAGCTCATGAAGTTGATCAAAAACATAAAGTTAGCTCATGAAGTGAGGAAAAGTACGACTTAAAAGATTACAACCCATTCCCTCACCTGATGTGGGACATTCAGACACCCGGTCCGCTAGGTCTAAACAACTAGAGCTTGAATAACACATATTGGAGGCTCAACATTGAATAACCAAACAGTAGGATGGATCTTGCTTTATACTACACAATGTGATAAGAGATGAATATGGGAATTCTGAGCTTGAATATCCCTGAAGGTATCTTGGTTTAGATAGTGGTGTATACGAAGGTTGGATAGCATCAGAACAAACATCATAGGATCCTCTAATATACTAACGATCTCCCTAACTTATCTAAGTGATATATACAGTAACATCCTCAATTACAGTTTTTTACATAATAATATTCTTGAATAACACCGTAAACACATAGCTGCTTATCAAAAACGAAAAAAAGCGGAGTGATGCATATACTTTTGGGGAACCACCATACTACCTTGACATAGATGTCTTCTGTTGTTTGAGATATAATCTGATTCTTATGGAGTGTTTTCTTCGGTTGCTTCTTTTTACTTTGAGCAGATTAATATGGTCTTGTCGACCTGATGCTTCAGGTTTGTGGTATCTTCTATCCTTCCTTCACTACTGTTATTGATTAGTTGTCATACCAATTTCTTTGCTTTAAAACAAACTATATGTGATTTCAGTTTTCATGCCCTACAGTTAATTATTTGTCATTCCTTTAATGCAGAATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAAT</genome_strand>
        <mrna_strand>GAGAATGATCTATCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGATATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCATGGATCCCGTTGAGGCAATTAAAAAATTGAGGCAGGAACCCAGTGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCGACTTCATAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCCATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAATGCGCAATGGTATTCGGACTTTTGCTTGTAG................................................................................................................................................................................................................................................................................................................CGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E705661" ref_strand="+" ref_description="SGN-E705661 [FA27DB06]">
      <seq>gaaaggtgctgctgagcgtggtgccaaaaaaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggattcatggagaccctcgagaatgatctagcaaaattacgtggacaaggtgttgatgcccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgttatgagaatgactgggatgtcgtaaaaagaggttgggatgcacaagttcttggtgaggctccacaccatttcaaggatcccgttgaggcaattaagaagttgaggcaggaacccaataccaatgatcaatacttagccccttttgttattgttgatgataatggaaagcctgttggtcctattttggatggtgatgctgttgtgactttcaacttcagagcagatcgtatggtcatgcttgcaaaggcccttgaatatgagaatttcgataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgcagcgagactgttaaatttggtcatgtcaccttcttttggaatggaaaccgttctgggtattttgacgagaaattggaagagtatgtggaaattccaagtgacagtgggattacatttaatgttaagccaaaaatgaaggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgaccaggtacgtgtgaacttacctaacagtgatatggtgggccatactggtgacatcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41295" stop="38236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40995" g_stop="40800" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40799" i_stop="39601" i_length="1199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39600" g_stop="39176" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="621" r_length="425" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39175" i_stop="38872" i_length="304">
            <donor d_prob="0.657" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38871" g_stop="38679" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="814" r_length="193" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38678" i_stop="38591" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38590" g_stop="38536" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="815" r_stop="869" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E705661" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40995" e_stop="40800"/>
          <exon e_start="39600" e_stop="39176"/>
          <exon e_start="38871" e_stop="38679"/>
          <exon e_start="38590" e_stop="38536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAGGTAAATTTGTGGCTTTTAGATATGCACCATGTTAGATTTTCTTTTCAATAATGTTGGCTCCTGCACCTAATACTGTCGGAAACTTCTAATGCCCCACATAAAGCATAGAGCAGCCTTCATTTCAGTAATCCATTGACTTGTTTGGTTAATATTATTTTGATTGAATTTCGTCTAGTTATATTTTCTTCGTCTTGGCTGGGTATATCTTTGATGTGGAGTAAGATTATTGGATTAGTTCTTTGATTTGATGCTGTCTGCTGCCTCTTGTCACTGTCTGCACTCTGCTGTCATAATTTGTTTGTTAAGAAGTAATTCGATTCATCACTCTCCAATCTTAGCTTTGTAGTTTGTTTTTTCTACCCCTTCCACTATTTCTGATATCAACATTTCATCTTTGTCATCAACTGTTGTCTCCCAAAGAAATTGGGGCTAACTCAATTTCGAAAGCTAGCTCATGAAGTTGATCAAAAACATAAAGTTAGCTCATGAAGTGAGGAAAAGTACGACTTAAAAGATTACAACCCATTCCCTCACCTGATGTGGGACATTCAGACACCCGGTCCGCTAGGTCTAAACAACTAGAGCTTGAATAACACATATTGGAGGCTCAACATTGAATAACCAAACAGTAGGATGGATCTTGCTTTATACTACACAATGTGATAAGAGATGAATATGGGAATTCTGAGCTTGAATATCCCTGAAGGTATCTTGGTTTAGATAGTGGTGTATACGAAGGTTGGATAGCATCAGAACAAACATCATAGGATCCTCTAATATACTAACGATCTCCCTAACTTATCTAAGTGATATATACAGTAACATCCTCAATTACAGTTTTTTACATAATAATATTCTTGAATAACACCGTAAACACATAGCTGCTTATCAAAAACGAAAAAAAGCGGAGTGATGCATATACTTTTGGGGAACCACCATACTACCTTGACATAGATGTCTTCTGTTGTTTGAGATATAATCTGATTCTTATGGAGTGTTTTCTTCGGTTGCTTCTTTTTACTTTGAGCAGATTAATATGGTCTTGTCGACCTGATGCTTCAGGTTTGTGGTATCTTCTATCCTTCCTTCACTACTGTTATTGATTAGTTGTCATACCAATTTCTTTGCTTTAAAACAAACTATATGTGATTTCAGTTTTCATGCCCTACAGTTAATTATTTGTCATTCCTTTAATGCAGAATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAG</genome_strand>
        <mrna_strand>GAAAGGTGCTGCTGAGCGTGGTGCCAAAAAAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGATTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATACCAATGATCAATACTTAGCCCCTTTTGTTATTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTTGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGCAG................................................................................................................................................................................................................................................................................................................CGAGACTGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGACCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E731643" ref_strand="+" ref_description="SGN-E731643 [LA27DA07]">
      <seq>gataatgatctatcaaaattacgtggacaaggtgttgatgcccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgttatgataatgactgggatgtcgtaaaaagaggttgggatgcacaagttcttggtgaggctccacaccatttcatggatcccgttgaggctattacaaaattgaggcacgaacccagtgccaatgatcaatacttagccccttttgttgttgttgatgataatggaaagcctgttggtcctattttggatggtgatgctgtcgtgactttcgacttcatagcagatcgtatggtcatgcttgcaaaggcccttgaatatgataatttccataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctaatgcgcaatggtattcggacttttgcttgtacccagaccgttatatttggtcatgtcaccttcttttgaaatggaaaccgttctgggtattttgacgagaaattggaagagtatgtggaaattccacgtgacagtgggattacatttaatgttaaaccaaaaatgacggcactggagattgctgaaagggctagggaggccatccttagccacaaatttgatcaggtacgtgtgaacttacctaacagtgatatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41192" stop="38259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40892" g_stop="40800" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40799" i_stop="39601" i_length="1199">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39600" g_stop="39176" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="518" r_length="425" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39175" i_stop="38872" i_length="304">
            <donor d_prob="0.657" d_score="0.96"/>
            <acceptor a_prob="0.945" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38871" g_stop="38679" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="711" r_length="193" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38678" i_stop="38591" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38590" g_stop="38559" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="743" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E731643" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40892" e_stop="40800"/>
          <exon e_start="39600" e_stop="39176"/>
          <exon e_start="38871" e_stop="38679"/>
          <exon e_start="38590" e_stop="38559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAGGTAAATTTGTGGCTTTTAGATATGCACCATGTTAGATTTTCTTTTCAATAATGTTGGCTCCTGCACCTAATACTGTCGGAAACTTCTAATGCCCCACATAAAGCATAGAGCAGCCTTCATTTCAGTAATCCATTGACTTGTTTGGTTAATATTATTTTGATTGAATTTCGTCTAGTTATATTTTCTTCGTCTTGGCTGGGTATATCTTTGATGTGGAGTAAGATTATTGGATTAGTTCTTTGATTTGATGCTGTCTGCTGCCTCTTGTCACTGTCTGCACTCTGCTGTCATAATTTGTTTGTTAAGAAGTAATTCGATTCATCACTCTCCAATCTTAGCTTTGTAGTTTGTTTTTTCTACCCCTTCCACTATTTCTGATATCAACATTTCATCTTTGTCATCAACTGTTGTCTCCCAAAGAAATTGGGGCTAACTCAATTTCGAAAGCTAGCTCATGAAGTTGATCAAAAACATAAAGTTAGCTCATGAAGTGAGGAAAAGTACGACTTAAAAGATTACAACCCATTCCCTCACCTGATGTGGGACATTCAGACACCCGGTCCGCTAGGTCTAAACAACTAGAGCTTGAATAACACATATTGGAGGCTCAACATTGAATAACCAAACAGTAGGATGGATCTTGCTTTATACTACACAATGTGATAAGAGATGAATATGGGAATTCTGAGCTTGAATATCCCTGAAGGTATCTTGGTTTAGATAGTGGTGTATACGAAGGTTGGATAGCATCAGAACAAACATCATAGGATCCTCTAATATACTAACGATCTCCCTAACTTATCTAAGTGATATATACAGTAACATCCTCAATTACAGTTTTTTACATAATAATATTCTTGAATAACACCGTAAACACATAGCTGCTTATCAAAAACGAAAAAAAGCGGAGTGATGCATATACTTTTGGGGAACCACCATACTACCTTGACATAGATGTCTTCTGTTGTTTGAGATATAATCTGATTCTTATGGAGTGTTTTCTTCGGTTGCTTCTTTTTACTTTGAGCAGATTAATATGGTCTTGTCGACCTGATGCTTCAGGTTTGTGGTATCTTCTATCCTTCCTTCACTACTGTTATTGATTAGTTGTCATACCAATTTCTTTGCTTTAAAACAAACTATATGTGATTTCAGTTTTCATGCCCTACAGTTAATTATTTGTCATTCCTTTAATGCAGAATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAGGTAATATATGCTGTTGCTTTGTGAGTGTTTATGTTTCAAAATTCTTTTTAAATAGCAAGCTTATCCTGGTTTCCGAATTATTTATTAGGTACGTGTGAACTTACCTAACAGTGATATGGT</genome_strand>
        <mrna_strand>GATAATGATCTATCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCATGGATCCCGTTGAGGCTATTACAAAATTGAGGCACGAACCCAGTGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCGACTTCATAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGATAATTTCCATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAATGCGCAATGGTATTCGGACTTTTGCTTGTAC................................................................................................................................................................................................................................................................................................................CCAGACCGTTATATTTGGTCATGTCACCTTCTTTTGAAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCACGTGACAGTGGGATTACATTTAATGTTAAACCAAAAATGACGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAG........................................................................................GTACGTGTGAACTTACCTAACAGTGATATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E703059" ref_strand="+" ref_description="SGN-E703059 [FA20BG08]">
      <seq>cttgcctctgggaaaatctatgatggagaaggtttcaaatacgttcaagaatgttttgagaaaggaactctgcaccttattggtctcgtgagtgatgggggtgtccactccaggcttgaccaattgctgttgctgctgaaaggtgctgctgagcgtggtgccaaaaaaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggattcatggagaccctcgagaatgatctagcaaattacgtggacaaggtgttgatgcccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgttatgagaatgactgggatgtcgtaaaaagaggttgggatgcacaagttcttggtgaggctccacaccatttcaaggatcccgttgaggcaattaagaagttgaggcaggaacccaataccaatgatcaatacttagccccttttgttattgttgatgataatggaaagcctgttggtcctattttggatggtgatgctgttgtgactttcaacttcagagcagatcgtatggtcatgcttgcaaaggcccttgaatatgagaatttcgataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtactaggacttttgcttgcancgagactgttaaatttggtcatgtcaccttcttttggaatggaaaccgttctgggtattttgacgagaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41604" stop="38499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41304" g_stop="41176" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41175" i_stop="41004" i_length="172">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41003" g_stop="40800" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="332" r_length="203" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="39601" i_length="1199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39600" g_stop="39176" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="757" r_length="425" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39175" i_stop="38872" i_length="304">
            <donor d_prob="0.657" d_score="0.92"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38871" g_stop="38799" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="830" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E703059" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41304" e_stop="41176"/>
          <exon e_start="41003" e_stop="40800"/>
          <exon e_start="39600" e_stop="39176"/>
          <exon e_start="38871" e_stop="38799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAGGTAAATTTGTGGCTTTTAGATATGCACCATGTTAGATTTTCTTTTCAATAATGTTGGCTCCTGCACCTAATACTGTCGGAAACTTCTAATGCCCCACATAAAGCATAGAGCAGCCTTCATTTCAGTAATCCATTGACTTGTTTGGTTAATATTATTTTGATTGAATTTCGTCTAGTTATATTTTCTTCGTCTTGGCTGGGTATATCTTTGATGTGGAGTAAGATTATTGGATTAGTTCTTTGATTTGATGCTGTCTGCTGCCTCTTGTCACTGTCTGCACTCTGCTGTCATAATTTGTTTGTTAAGAAGTAATTCGATTCATCACTCTCCAATCTTAGCTTTGTAGTTTGTTTTTTCTACCCCTTCCACTATTTCTGATATCAACATTTCATCTTTGTCATCAACTGTTGTCTCCCAAAGAAATTGGGGCTAACTCAATTTCGAAAGCTAGCTCATGAAGTTGATCAAAAACATAAAGTTAGCTCATGAAGTGAGGAAAAGTACGACTTAAAAGATTACAACCCATTCCCTCACCTGATGTGGGACATTCAGACACCCGGTCCGCTAGGTCTAAACAACTAGAGCTTGAATAACACATATTGGAGGCTCAACATTGAATAACCAAACAGTAGGATGGATCTTGCTTTATACTACACAATGTGATAAGAGATGAATATGGGAATTCTGAGCTTGAATATCCCTGAAGGTATCTTGGTTTAGATAGTGGTGTATACGAAGGTTGGATAGCATCAGAACAAACATCATAGGATCCTCTAATATACTAACGATCTCCCTAACTTATCTAAGTGATATATACAGTAACATCCTCAATTACAGTTTTTTACATAATAATATTCTTGAATAACACCGTAAACACATAGCTGCTTATCAAAAACGAAAAAAAGCGGAGTGATGCATATACTTTTGGGGAACCACCATACTACCTTGACATAGATGTCTTCTGTTGTTTGAGATATAATCTGATTCTTATGGAGTGTTTTCTTCGGTTGCTTCTTTTTACTTTGAGCAGATTAATATGGTCTTGTCGACCTGATGCTTCAGGTTTGTGGTATCTTCTATCCTTCCTTCACTACTGTTATTGATTAGTTGTCATACCAATTTCTTTGCTTTAAAACAAACTATATGTGATTTCAGTTTTCATGCCCTACAGTTAATTATTTGTCATTCCTTTAATGCAGAATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTG</genome_strand>
        <mrna_strand>CTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAATTGCTG............................................................................................................................................................................TTGCTGCTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAAAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGATTCATGGAGACCCTCGAGAATGATCTAGC-AAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATACCAATGATCAATACTTAGCCCCTTTTGTTATTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTTGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTACTAGGACTTTTGCTTGCAN................................................................................................................................................................................................................................................................................................................CGAGACTGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E707905" ref_strand="+" ref_description="SGN-E707905 [FA34BB11]">
      <seq>ccttttaagaaaggaactctgcaccttattggtctcgtgagtgatgggggtgtccactccaggcttgaccaactgctgttgctactgaaaggtgctgctgagcgtggtgccaaaagaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggcttcatggagaccctcgagaatgatctagcaaaattacgtggacaaggtgttgatgcccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgttatgagaatgactgggatgtcgtaaaaagaggttgggatgcacaagttcttggtgaggctccacaccatttcaaggatcccgttgaggcaattaagaagttgaggcaggaacccaatgccaatgatcaatacttagccccttttgttgttgttgatgataatggaaagcctgttggtcctattttggatggtgatgctgtcgtgactttcaacttcagagcagatcgtatggtcatgcttgcaaaggcccttgaatatgagaatttcgataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgtagcgagaccgttaaatttggtcatgtcaccttcttttggaatggaaaccgttctgggtatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41551" stop="38511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41253" g_stop="41176" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41175" i_stop="41004" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41003" g_stop="40800" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="282" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="39601" i_length="1199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39600" g_stop="39176" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="706" r_length="424" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39175" i_stop="38872" i_length="304">
            <donor d_prob="0.657" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38871" g_stop="38811" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="767" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E707905" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41253" e_stop="41176"/>
          <exon e_start="41003" e_stop="40800"/>
          <exon e_start="39600" e_stop="39176"/>
          <exon e_start="38871" e_stop="38811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAGGTAAATTTGTGGCTTTTAGATATGCACCATGTTAGATTTTCTTTTCAATAATGTTGGCTCCTGCACCTAATACTGTCGGAAACTTCTAATGCCCCACATAAAGCATAGAGCAGCCTTCATTTCAGTAATCCATTGACTTGTTTGGTTAATATTATTTTGATTGAATTTCGTCTAGTTATATTTTCTTCGTCTTGGCTGGGTATATCTTTGATGTGGAGTAAGATTATTGGATTAGTTCTTTGATTTGATGCTGTCTGCTGCCTCTTGTCACTGTCTGCACTCTGCTGTCATAATTTGTTTGTTAAGAAGTAATTCGATTCATCACTCTCCAATCTTAGCTTTGTAGTTTGTTTTTTCTACCCCTTCCACTATTTCTGATATCAACATTTCATCTTTGTCATCAACTGTTGTCTCCCAAAGAAATTGGGGCTAACTCAATTTCGAAAGCTAGCTCATGAAGTTGATCAAAAACATAAAGTTAGCTCATGAAGTGAGGAAAAGTACGACTTAAAAGATTACAACCCATTCCCTCACCTGATGTGGGACATTCAGACACCCGGTCCGCTAGGTCTAAACAACTAGAGCTTGAATAACACATATTGGAGGCTCAACATTGAATAACCAAACAGTAGGATGGATCTTGCTTTATACTACACAATGTGATAAGAGATGAATATGGGAATTCTGAGCTTGAATATCCCTGAAGGTATCTTGGTTTAGATAGTGGTGTATACGAAGGTTGGATAGCATCAGAACAAACATCATAGGATCCTCTAATATACTAACGATCTCCCTAACTTATCTAAGTGATATATACAGTAACATCCTCAATTACAGTTTTTTACATAATAATATTCTTGAATAACACCGTAAACACATAGCTGCTTATCAAAAACGAAAAAAAGCGGAGTGATGCATATACTTTTGGGGAACCACCATACTACCTTGACATAGATGTCTTCTGTTGTTTGAGATATAATCTGATTCTTATGGAGTGTTTTCTTCGGTTGCTTCTTTTTACTTTGAGCAGATTAATATGGTCTTGTCGACCTGATGCTTCAGGTTTGTGGTATCTTCTATCCTTCCTTCACTACTGTTATTGATTAGTTGTCATACCAATTTCTTTGCTTTAAAACAAACTATATGTGATTTCAGTTTTCATGCCCTACAGTTAATTATTTGTCATTCCTTTAATGCAGAATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTT</genome_strand>
        <mrna_strand>CCTTTTAAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG............................................................................................................................................................................TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGT-AATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAG................................................................................................................................................................................................................................................................................................................CGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E245140" ref_strand="+" ref_description="SGN-E245140 [cLEF-13-N10]">
      <seq>gaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgtaggtgcgttgctgtggcatatcttctggtgcctttgtttagtatttttgccgaataaattgctaatttgctcaaaatgtctgattattatagagtcttctgctatatttgttaacattgtaaagcctggaagtcaattggcctcttgtattttaagaaataaaataaaatggtgaattaagaggttagttggaagtaaatatgccattctaaatgataaaatattctgcaagaagaaacatctaatatataagagtttgaattttctttgaactagtattaacaactccggttcttgtttcaacagcgagaccgttaaatttggtcatgtcaccttcttttggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="39576" stop="38532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39276" g_stop="38832" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E245140" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39276" e_stop="38832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAAT</genome_strand>
        <mrna_strand>GAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E710379" ref_strand="+" ref_description="SGN-E710379 [FA55BA05]">
      <seq>ccgcttatgggaaaatctatgatggagaaagtttcaaataccttcatgaatgttttgagaaaggaactctgcaccttattggtctcgtgagtgatgggggtgtccactccaggcttgaccaactgctgttgctactgaaaggtgctgctgagcgtggtgccaaaagaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggcttcatggagaccctcgagaatgatctagcaaaattacgtggacaaggtgttgatgcccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgttatgagaatgactgggatgtcgtaaaaagaggttgggatgcacaagttcttggtgaggctccacaccatttcaaggatcccgttgaggcaattaagaagttgaggcaggaacccaatgccaatgatcaatacttagccccttttgttgttgttgatgataatggaaagcctgttggtcctattttggatggtgatgctgtcgtgactttcaacttcagagcagatcgtatggtcatgcttgcaaaggcccttgaatatgagaatttcgataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctggggagtatctagtgcgcaatggtattcggacttttgcttgtaccgagaccgttaaatttggtcatgtcacccttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41601" stop="38539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41303" g_stop="41176" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41175" i_stop="41004" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41003" g_stop="40800" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="332" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="39601" i_length="1199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39600" g_stop="39176" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="757" r_length="425" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39175" i_stop="38872" i_length="304">
            <donor d_prob="0.657" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38871" g_stop="38839" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="791" r_length="34" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E710379" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41303" e_stop="41176"/>
          <exon e_start="41003" e_stop="40800"/>
          <exon e_start="39600" e_stop="39176"/>
          <exon e_start="38871" e_stop="38839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAGGTAAATTTGTGGCTTTTAGATATGCACCATGTTAGATTTTCTTTTCAATAATGTTGGCTCCTGCACCTAATACTGTCGGAAACTTCTAATGCCCCACATAAAGCATAGAGCAGCCTTCATTTCAGTAATCCATTGACTTGTTTGGTTAATATTATTTTGATTGAATTTCGTCTAGTTATATTTTCTTCGTCTTGGCTGGGTATATCTTTGATGTGGAGTAAGATTATTGGATTAGTTCTTTGATTTGATGCTGTCTGCTGCCTCTTGTCACTGTCTGCACTCTGCTGTCATAATTTGTTTGTTAAGAAGTAATTCGATTCATCACTCTCCAATCTTAGCTTTGTAGTTTGTTTTTTCTACCCCTTCCACTATTTCTGATATCAACATTTCATCTTTGTCATCAACTGTTGTCTCCCAAAGAAATTGGGGCTAACTCAATTTCGAAAGCTAGCTCATGAAGTTGATCAAAAACATAAAGTTAGCTCATGAAGTGAGGAAAAGTACGACTTAAAAGATTACAACCCATTCCCTCACCTGATGTGGGACATTCAGACACCCGGTCCGCTAGGTCTAAACAACTAGAGCTTGAATAACACATATTGGAGGCTCAACATTGAATAACCAAACAGTAGGATGGATCTTGCTTTATACTACACAATGTGATAAGAGATGAATATGGGAATTCTGAGCTTGAATATCCCTGAAGGTATCTTGGTTTAGATAGTGGTGTATACGAAGGTTGGATAGCATCAGAACAAACATCATAGGATCCTCTAATATACTAACGATCTCCCTAACTTATCTAAGTGATATATACAGTAACATCCTCAATTACAGTTTTTTACATAATAATATTCTTGAATAACACCGTAAACACATAGCTGCTTATCAAAAACGAAAAAAAGCGGAGTGATGCATATACTTTTGGGGAACCACCATACTACCTTGACATAGATGTCTTCTGTTGTTTGAGATATAATCTGATTCTTATGGAGTGTTTTCTTCGGTTGCTTCTTTTTACTTTGAGCAGATTAATATGGTCTTGTCGACCTGATGCTTCAGGTTTGTGGTATCTTCTATCCTTCCTTCACTACTGTTATTGATTAGTTGTCATACCAATTTCTTTGCTTTAAAACAAACTATATGTGATTTCAGTTTTCATGCCCTACAGTTAATTATTTGTCATTCCTTTAATGCAGAATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCA-CCTTCTT</genome_strand>
        <mrna_strand>CCGCTTATGGGAAAATCTATGATGGAGAAAGTTTCAAATACCTTCATGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG............................................................................................................................................................................TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAC................................................................................................................................................................................................................................................................................................................CGAGACCGTTAAATTTGGTCATGTCACCCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E702985" ref_strand="+" ref_description="SGN-E702985 [FA20BA01]">
      <seq>gcctctgggaaaatctatgatggagaaggtttcaaatacgttcaagaatgttttgagaaaggaactctgcaccttattggtctcgtgagtgatgggggtgtccactccaggcttgaccaattgctgttgctgctgaaaggtgctgctgagcgtggtgccaaaaaaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggattcatggagaccctcgagaatgatctagcaaaattacgtggacaaggtgttgatgcccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgttatgagaatgactgggatgtcgtaaaaagaggttgggatgcacaagttcttggtgaggctccacaccatttcaaggatcccgttgaggcaattaagaagttgaggcaggaacccaataccaatgatcaatacttagccccttttgttattgttgatgataatggaaagcctgttggtcctattttggatggtgatgctgttgtgactttcaacttcagagcagatcgtatggtcatgcttgcaaaggcccttgaatatgagaatttcgataaatttgatcgtgtacgagtccctaaaatccattatgctggtatgctccaatatgacggtgaattgaagcttccaagcaaataccttgtttctcctccagagattgacaggacatctgtggagtatctagtgcgcaatggtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="41601" stop="38893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41301" g_stop="41176" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41175" i_stop="41004" i_length="172">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41003" g_stop="40800" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="330" r_length="204" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40799" i_stop="39601" i_length="1199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39600" g_stop="39193" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="738" r_length="408" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E702985" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41301" e_stop="41176"/>
          <exon e_start="41003" e_stop="40800"/>
          <exon e_start="39600" e_stop="39193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAGGTAAATTTGTGGCTTTTAGATATGCACCATGTTAGATTTTCTTTTCAATAATGTTGGCTCCTGCACCTAATACTGTCGGAAACTTCTAATGCCCCACATAAAGCATAGAGCAGCCTTCATTTCAGTAATCCATTGACTTGTTTGGTTAATATTATTTTGATTGAATTTCGTCTAGTTATATTTTCTTCGTCTTGGCTGGGTATATCTTTGATGTGGAGTAAGATTATTGGATTAGTTCTTTGATTTGATGCTGTCTGCTGCCTCTTGTCACTGTCTGCACTCTGCTGTCATAATTTGTTTGTTAAGAAGTAATTCGATTCATCACTCTCCAATCTTAGCTTTGTAGTTTGTTTTTTCTACCCCTTCCACTATTTCTGATATCAACATTTCATCTTTGTCATCAACTGTTGTCTCCCAAAGAAATTGGGGCTAACTCAATTTCGAAAGCTAGCTCATGAAGTTGATCAAAAACATAAAGTTAGCTCATGAAGTGAGGAAAAGTACGACTTAAAAGATTACAACCCATTCCCTCACCTGATGTGGGACATTCAGACACCCGGTCCGCTAGGTCTAAACAACTAGAGCTTGAATAACACATATTGGAGGCTCAACATTGAATAACCAAACAGTAGGATGGATCTTGCTTTATACTACACAATGTGATAAGAGATGAATATGGGAATTCTGAGCTTGAATATCCCTGAAGGTATCTTGGTTTAGATAGTGGTGTATACGAAGGTTGGATAGCATCAGAACAAACATCATAGGATCCTCTAATATACTAACGATCTCCCTAACTTATCTAAGTGATATATACAGTAACATCCTCAATTACAGTTTTTTACATAATAATATTCTTGAATAACACCGTAAACACATAGCTGCTTATCAAAAACGAAAAAAAGCGGAGTGATGCATATACTTTTGGGGAACCACCATACTACCTTGACATAGATGTCTTCTGTTGTTTGAGATATAATCTGATTCTTATGGAGTGTTTTCTTCGGTTGCTTCTTTTTACTTTGAGCAGATTAATATGGTCTTGTCGACCTGATGCTTCAGGTTTGTGGTATCTTCTATCCTTCCTTCACTACTGTTATTGATTAGTTGTCATACCAATTTCTTTGCTTTAAAACAAACTATATGTGATTTCAGTTTTCATGCCCTACAGTTAATTATTTGTCATTCCTTTAATGCAGAATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATT</genome_strand>
        <mrna_strand>GCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAATTGCTG............................................................................................................................................................................TTGCTGCTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAAAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGATTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATACCAATGATCAATACTTAGCCCCTTTTGTTATTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTTGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGTGGAGTATCTAGTGCGCAATGGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E316334" ref_strand="+" ref_description="SGN-E316334 [cTOA-25-K19]">
      <seq>tcactcaagaagggtgctcctgaacattggagattgattaaggcacatggaaatgctgtggggcttcccacagaggatgatatgggtaacagtgaagttggtcacaatgctcttggggctggaaggatctttgctcaaggtgcaaagcttgttgacctagcccttgcctctgggaaaatctatgatggagaaggtttcaaatacgttcaagaatgttttgagaaaggaactctgcaccttattggtctcgtgagtgatgggggtgtccactccaggcttgaccaactgctgttgctactgaaaggtgctgctgagcgtggtgccaaaagaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggcttcatggagaccctcgagaatgatctagcaaaattacgtggacaaggtgttgatgcccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgttatgagaatgactgggatgtcgtaaaaagaggttgggatgcacaagttcttggtgaggctccacaccatttcaaggatcccgttgaggcaattaagaagttgaggcaggaacccaatgccaatgatcaatacttagccccttttgttgttgttgatgataatggaaagcctgttggtcctattttggatggtgatgctgtcgtgactttcaacttcagagcagatcgtatggtcatgcttgcaaaggccctttgatatgagaatttcgataaatttgatcgtgtacgagtccctaaatccattatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42243" stop="38997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42044" g_stop="42033" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42032" i_stop="41933" i_length="100">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41932" g_stop="41805" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="140" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41804" i_stop="41327" i_length="478">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41326" g_stop="41176" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="291" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41175" i_stop="41004" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41003" g_stop="40800" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="495" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40799" i_stop="39601" i_length="1199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39600" g_stop="39297" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="798" r_length="303" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E316334" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42044" e_stop="42033"/>
          <exon e_start="41932" e_stop="41805"/>
          <exon e_start="41326" e_stop="41176"/>
          <exon e_start="41003" e_stop="40800"/>
          <exon e_start="39600" e_stop="39297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCAAGAAGGTCTATTGGATTGGATTTCCTTCTTTTTGTGTTAAAGATTCTTGCTTTATGGATTTACGACTTGTTTATTTATCTGGGTTTTTGTTAAAATTAATTATAGGGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGGGTATGCGCTCTTTTCTTATAATCTTTTGTTTGCCTTTTGAAAAAAAAAATATGTTTTTACTTTAGAGATCTTGTAGGTTGTTGAATTTGAAATGTTGTTTTTGGATTATTATCTGTTAAGTTTGTTAGAAATTGGGCTGCTTAATGTTTTAGTGTAGTATAATAAATGCAACCAAGTTACTATGTCAATGCTTCCAATCAATATATTAGGAACAAATAGATCCTTCACATTTTCACTCCTTTATTGGCTTCACAATTGCTGTACCTCTGTACTACTCCCGCATCAGAGTGCAAATAGAATATTTTTTTAATACTTCCTAGTTCTAGCAACAATCGTGCTCAAGGACTTCTTTTTTTATTTGCCTGATTGATTTTATGCAATATCTGGGTTAGGGAAGCTATTTTAACGCGGGTTTGTATTTTTTTGTCCAAAAGTGTAGATTGTTGCTTGTTATCGTCTCTAATGTGTTTCCTTGCAGTGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAGGTAAATTTGTGGCTTTTAGATATGCACCATGTTAGATTTTCTTTTCAATAATGTTGGCTCCTGCACCTAATACTGTCGGAAACTTCTAATGCCCCACATAAAGCATAGAGCAGCCTTCATTTCAGTAATCCATTGACTTGTTTGGTTAATATTATTTTGATTGAATTTCGTCTAGTTATATTTTCTTCGTCTTGGCTGGGTATATCTTTGATGTGGAGTAAGATTATTGGATTAGTTCTTTGATTTGATGCTGTCTGCTGCCTCTTGTCACTGTCTGCACTCTGCTGTCATAATTTGTTTGTTAAGAAGTAATTCGATTCATCACTCTCCAATCTTAGCTTTGTAGTTTGTTTTTTCTACCCCTTCCACTATTTCTGATATCAACATTTCATCTTTGTCATCAACTGTTGTCTCCCAAAGAAATTGGGGCTAACTCAATTTCGAAAGCTAGCTCATGAAGTTGATCAAAAACATAAAGTTAGCTCATGAAGTGAGGAAAAGTACGACTTAAAAGATTACAACCCATTCCCTCACCTGATGTGGGACATTCAGACACCCGGTCCGCTAGGTCTAAACAACTAGAGCTTGAATAACACATATTGGAGGCTCAACATTGAATAACCAAACAGTAGGATGGATCTTGCTTTATACTACACAATGTGATAAGAGATGAATATGGGAATTCTGAGCTTGAATATCCCTGAAGGTATCTTGGTTTAGATAGTGGTGTATACGAAGGTTGGATAGCATCAGAACAAACATCATAGGATCCTCTAATATACTAACGATCTCCCTAACTTATCTAAGTGATATATACAGTAACATCCTCAATTACAGTTTTTTACATAATAATATTCTTGAATAACACCGTAAACACATAGCTGCTTATCAAAAACGAAAAAAAGCGGAGTGATGCATATACTTTTGGGGAACCACCATACTACCTTGACATAGATGTCTTCTGTTGTTTGAGATATAATCTGATTCTTATGGAGTGTTTTCTTCGGTTGCTTCTTTTTACTTTGAGCAGATTAATATGGTCTTGTCGACCTGATGCTTCAGGTTTGTGGTATCTTCTATCCTTCCTTCACTACTGTTATTGATTAGTTGTCATACCAATTTCTTTGCTTTAAAACAAACTATATGTGATTTCAGTTTTCATGCCCTACAGTTAATTATTTGTCATTCCTTTAATGCAGAATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTG</genome_strand>
        <mrna_strand>TCACTCAAGAAG....................................................................................................GGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG............................................................................................................................................................................TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTTGATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCT-AAATCCATTATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E706674" ref_strand="+" ref_description="SGN-E706674 [FA30CE02]">
      <seq>cgctcttctataccgcttaagatctgagataatgggtagttcaggagatgcatggaaattgaaggaccatcctaagcttcctaagggaaagactgttgctgttattgttttggatggttggggtgaggctaaacctaatgagtataacgctatctctgttgctgaaactcctgttatggactcactcaagaagggtgctcctgaacattggagattgattaaggcacatggaaatgctgtggggcttcccacagaggatgatatgggtaacagtgaagttggtcacaatgctcttggggctggaaggatctttgctcaaggtgcaaagcttgttgacctagcccttgcctctgggaaaatctatgatggagaaggtttcaaatacgttcaagaatgttttgagaaaggaactctgcaccttattggtctcgtgagtgatgggggtgtccactccaggcttgaccaattgctgttgctgctgaaaggtgctgctgagcgtggtgccaaaaaaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggattcatggagaccctcgagaatgatctagcaaaattacgtggacaaggtgttgatgcccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgttatgagaatgactgggatgtcgtaaaaagaggttgggatgccacagttcttggtgaggctccacaccatttcaaggatcccgttgaggcaattaagaagttgaggcaggaacccaataccaatgatcaatacttagccccttttgttattgttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42272" stop="39150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42214" g_stop="42033" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="193" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42032" i_stop="41933" i_length="100">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41932" g_stop="41805" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="321" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41804" i_stop="41327" i_length="478">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41326" g_stop="41176" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="472" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41175" i_stop="41004" i_length="172">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41003" g_stop="40800" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="676" r_length="204" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40799" i_stop="39601" i_length="1199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39600" g_stop="39450" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="827" r_length="151" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E706674" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42214" e_stop="42033"/>
          <exon e_start="41932" e_stop="41805"/>
          <exon e_start="41326" e_stop="41176"/>
          <exon e_start="41003" e_stop="40800"/>
          <exon e_start="39600" e_stop="39450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAGGTCTATTGGATTGGATTTCCTTCTTTTTGTGTTAAAGATTCTTGCTTTATGGATTTACGACTTGTTTATTTATCTGGGTTTTTGTTAAAATTAATTATAGGGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGGGTATGCGCTCTTTTCTTATAATCTTTTGTTTGCCTTTTGAAAAAAAAAATATGTTTTTACTTTAGAGATCTTGTAGGTTGTTGAATTTGAAATGTTGTTTTTGGATTATTATCTGTTAAGTTTGTTAGAAATTGGGCTGCTTAATGTTTTAGTGTAGTATAATAAATGCAACCAAGTTACTATGTCAATGCTTCCAATCAATATATTAGGAACAAATAGATCCTTCACATTTTCACTCCTTTATTGGCTTCACAATTGCTGTACCTCTGTACTACTCCCGCATCAGAGTGCAAATAGAATATTTTTTTAATACTTCCTAGTTCTAGCAACAATCGTGCTCAAGGACTTCTTTTTTTATTTGCCTGATTGATTTTATGCAATATCTGGGTTAGGGAAGCTATTTTAACGCGGGTTTGTATTTTTTTGTCCAAAAGTGTAGATTGTTGCTTGTTATCGTCTCTAATGTGTTTCCTTGCAGTGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAGGTAAATTTGTGGCTTTTAGATATGCACCATGTTAGATTTTCTTTTCAATAATGTTGGCTCCTGCACCTAATACTGTCGGAAACTTCTAATGCCCCACATAAAGCATAGAGCAGCCTTCATTTCAGTAATCCATTGACTTGTTTGGTTAATATTATTTTGATTGAATTTCGTCTAGTTATATTTTCTTCGTCTTGGCTGGGTATATCTTTGATGTGGAGTAAGATTATTGGATTAGTTCTTTGATTTGATGCTGTCTGCTGCCTCTTGTCACTGTCTGCACTCTGCTGTCATAATTTGTTTGTTAAGAAGTAATTCGATTCATCACTCTCCAATCTTAGCTTTGTAGTTTGTTTTTTCTACCCCTTCCACTATTTCTGATATCAACATTTCATCTTTGTCATCAACTGTTGTCTCCCAAAGAAATTGGGGCTAACTCAATTTCGAAAGCTAGCTCATGAAGTTGATCAAAAACATAAAGTTAGCTCATGAAGTGAGGAAAAGTACGACTTAAAAGATTACAACCCATTCCCTCACCTGATGTGGGACATTCAGACACCCGGTCCGCTAGGTCTAAACAACTAGAGCTTGAATAACACATATTGGAGGCTCAACATTGAATAACCAAACAGTAGGATGGATCTTGCTTTATACTACACAATGTGATAAGAGATGAATATGGGAATTCTGAGCTTGAATATCCCTGAAGGTATCTTGGTTTAGATAGTGGTGTATACGAAGGTTGGATAGCATCAGAACAAACATCATAGGATCCTCTAATATACTAACGATCTCCCTAACTTATCTAAGTGATATATACAGTAACATCCTCAATTACAGTTTTTTACATAATAATATTCTTGAATAACACCGTAAACACATAGCTGCTTATCAAAAACGAAAAAAAGCGGAGTGATGCATATACTTTTGGGGAACCACCATACTACCTTGACATAGATGTCTTCTGTTGTTTGAGATATAATCTGATTCTTATGGAGTGTTTTCTTCGGTTGCTTCTTTTTACTTTGAGCAGATTAATATGGTCTTGTCGACCTGATGCTTCAGGTTTGTGGTATCTTCTATCCTTCCTTCACTACTGTTATTGATTAGTTGTCATACCAATTTCTTTGCTTTAAAACAAACTATATGTGATTTCAGTTTTCATGCCCTACAGTTAATTATTTGTCATTCCTTTAATGCAGAATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATG</genome_strand>
        <mrna_strand>ACCGCTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAG....................................................................................................GGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAATTGCTG............................................................................................................................................................................TTGCTGCTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAAAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGATTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCCACAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATACCAATGATCAATACTTAGCCCCTTTTGTTATTGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E554113" ref_strand="+" ref_description="SGN-E554113 [cTSC-3-E16]">
      <seq>tcctaagcttcctaagggaaagactgttgctgttattgttttggatggttggggtgaggctaaacctaatgagtataacgctatctctgttgctgaaactcctgttatggactcactcaagaagggtgctcctgaacattggagattgattaaggcacatggaaatgctgtggggcttcccacagaggatgatatgggtaacagtgaagttggtcacaatgctcttggggctggaaggatctttgctcaaggtgcaaagcttgttgacctagcccttgcctctgggaaaatctatgatggagaaggtttcaaatacgttcaagaatgttttgagaaaggaactctgcaccttattgggctcgtgagtgatgggggtgtccactccaggcttgaccaactgctgttgctactgaaaggtgctgctgagcgtggtgccaaaagaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggcttcatggagaccctcgagaatgatctagcaaaattacgtggacaaggtgttgatgcccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgttatgagaatgactgggatgtcgtaaaaagaggttgggatgcactagttcttggtgaggctccacaccatttcaaggatcccgttgaggcaattaagaagttgaaggcaggaacccaatgccaatgatcaatacttaaccccttttgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42272" stop="39159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42156" g_stop="42033" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42032" i_stop="41933" i_length="100">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41932" g_stop="41805" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="252" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41804" i_stop="41327" i_length="478">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41326" g_stop="41176" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="403" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41175" i_stop="41004" i_length="172">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41003" g_stop="40800" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="607" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40799" i_stop="39601" i_length="1199">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39600" g_stop="39459" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="750" r_length="143" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E554113" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42156" e_stop="42033"/>
          <exon e_start="41932" e_stop="41805"/>
          <exon e_start="41326" e_stop="41176"/>
          <exon e_start="41003" e_stop="40800"/>
          <exon e_start="39600" e_stop="39459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAGGTCTATTGGATTGGATTTCCTTCTTTTTGTGTTAAAGATTCTTGCTTTATGGATTTACGACTTGTTTATTTATCTGGGTTTTTGTTAAAATTAATTATAGGGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGGGTATGCGCTCTTTTCTTATAATCTTTTGTTTGCCTTTTGAAAAAAAAAATATGTTTTTACTTTAGAGATCTTGTAGGTTGTTGAATTTGAAATGTTGTTTTTGGATTATTATCTGTTAAGTTTGTTAGAAATTGGGCTGCTTAATGTTTTAGTGTAGTATAATAAATGCAACCAAGTTACTATGTCAATGCTTCCAATCAATATATTAGGAACAAATAGATCCTTCACATTTTCACTCCTTTATTGGCTTCACAATTGCTGTACCTCTGTACTACTCCCGCATCAGAGTGCAAATAGAATATTTTTTTAATACTTCCTAGTTCTAGCAACAATCGTGCTCAAGGACTTCTTTTTTTATTTGCCTGATTGATTTTATGCAATATCTGGGTTAGGGAAGCTATTTTAACGCGGGTTTGTATTTTTTTGTCCAAAAGTGTAGATTGTTGCTTGTTATCGTCTCTAATGTGTTTCCTTGCAGTGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAGGTAAATTTGTGGCTTTTAGATATGCACCATGTTAGATTTTCTTTTCAATAATGTTGGCTCCTGCACCTAATACTGTCGGAAACTTCTAATGCCCCACATAAAGCATAGAGCAGCCTTCATTTCAGTAATCCATTGACTTGTTTGGTTAATATTATTTTGATTGAATTTCGTCTAGTTATATTTTCTTCGTCTTGGCTGGGTATATCTTTGATGTGGAGTAAGATTATTGGATTAGTTCTTTGATTTGATGCTGTCTGCTGCCTCTTGTCACTGTCTGCACTCTGCTGTCATAATTTGTTTGTTAAGAAGTAATTCGATTCATCACTCTCCAATCTTAGCTTTGTAGTTTGTTTTTTCTACCCCTTCCACTATTTCTGATATCAACATTTCATCTTTGTCATCAACTGTTGTCTCCCAAAGAAATTGGGGCTAACTCAATTTCGAAAGCTAGCTCATGAAGTTGATCAAAAACATAAAGTTAGCTCATGAAGTGAGGAAAAGTACGACTTAAAAGATTACAACCCATTCCCTCACCTGATGTGGGACATTCAGACACCCGGTCCGCTAGGTCTAAACAACTAGAGCTTGAATAACACATATTGGAGGCTCAACATTGAATAACCAAACAGTAGGATGGATCTTGCTTTATACTACACAATGTGATAAGAGATGAATATGGGAATTCTGAGCTTGAATATCCCTGAAGGTATCTTGGTTTAGATAGTGGTGTATACGAAGGTTGGATAGCATCAGAACAAACATCATAGGATCCTCTAATATACTAACGATCTCCCTAACTTATCTAAGTGATATATACAGTAACATCCTCAATTACAGTTTTTTACATAATAATATTCTTGAATAACACCGTAAACACATAGCTGCTTATCAAAAACGAAAAAAAGCGGAGTGATGCATATACTTTTGGGGAACCACCATACTACCTTGACATAGATGTCTTCTGTTGTTTGAGATATAATCTGATTCTTATGGAGTGTTTTCTTCGGTTGCTTCTTTTTACTTTGAGCAGATTAATATGGTCTTGTCGACCTGATGCTTCAGGTTTGTGGTATCTTCTATCCTTCCTTCACTACTGTTATTGATTAGTTGTCATACCAATTTCTTTGCTTTAAAACAAACTATATGTGATTTCAGTTTTCATGCCCTACAGTTAATTATTTGTCATTCCTTTAATGCAGAATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTG-AGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTG</genome_strand>
        <mrna_strand>TCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAG....................................................................................................GGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGGCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG............................................................................................................................................................................TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACTAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAAGGCAGGAACCCAATGCCAATGATCAATACTTAACCCCTTTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E334308" ref_strand="+" ref_description="SGN-E334308 [cTOD-21-G24]">
      <seq>tctcttctctcttctataccgcttaagaatttttaagatctgagataatgggtagttcaggagatgcatggaaattgaaggaccatcctaagcttcctaagggaaagactgttgctgttattgttttggatggttggggtgaggctaaacctaatgagtataacgctatctctgttgctgaaactcctgttatggactcactcaagaagggtgctcctgaacattggagattgattaaggcacatggaaatgctgtggggcttcccacagaggatgatatgggtaacagtgaagttggtcacaatgctcttggggctggaaggatctttgctcaaggtgcaaagcttgttgacctagcccttgcctctgggaaaatctatgatggagaaggtttcaaatacgttcaagaatgttttgagaaaggaactctgcaccttattggtctcgtgagtgatgggggtgtccactccaggcttgaccaactgctgttgctactgaaaggtgctgctgagcgtggtgccaaaagaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggcttcatggagaccctcgagaatgatctagcaaaattacgtggacaaggtgttgatgcccgggttgcatctggtggaggtcgcatgtatgttaccatggatcgttatgagaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42272" stop="40500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42214" g_stop="42033" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="209" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42032" i_stop="41933" i_length="100">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41932" g_stop="41805" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="337" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41804" i_stop="41327" i_length="478">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41326" g_stop="41176" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="488" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41175" i_stop="41004" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41003" g_stop="40800" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="692" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E334308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42214" e_stop="42033"/>
          <exon e_start="41932" e_stop="41805"/>
          <exon e_start="41326" e_stop="41176"/>
          <exon e_start="41003" e_stop="40800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAGGTCTATTGGATTGGATTTCCTTCTTTTTGTGTTAAAGATTCTTGCTTTATGGATTTACGACTTGTTTATTTATCTGGGTTTTTGTTAAAATTAATTATAGGGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGGGTATGCGCTCTTTTCTTATAATCTTTTGTTTGCCTTTTGAAAAAAAAAATATGTTTTTACTTTAGAGATCTTGTAGGTTGTTGAATTTGAAATGTTGTTTTTGGATTATTATCTGTTAAGTTTGTTAGAAATTGGGCTGCTTAATGTTTTAGTGTAGTATAATAAATGCAACCAAGTTACTATGTCAATGCTTCCAATCAATATATTAGGAACAAATAGATCCTTCACATTTTCACTCCTTTATTGGCTTCACAATTGCTGTACCTCTGTACTACTCCCGCATCAGAGTGCAAATAGAATATTTTTTTAATACTTCCTAGTTCTAGCAACAATCGTGCTCAAGGACTTCTTTTTTTATTTGCCTGATTGATTTTATGCAATATCTGGGTTAGGGAAGCTATTTTAACGCGGGTTTGTATTTTTTTGTCCAAAAGTGTAGATTGTTGCTTGTTATCGTCTCTAATGTGTTTCCTTGCAGTGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG</genome_strand>
        <mrna_strand>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAG....................................................................................................GGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG............................................................................................................................................................................TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E706950" ref_strand="+" ref_description="SGN-E706950 [FA31CE11]">
      <seq>gcgctaaacctaatgagtataacgctatctctgttgctgaaacctcctgttatggactcactcaagaagggtgctcctgaacattggagattgattaaggcacatggaaatgctgtggggcttcccacagaggatgatatgggtaacagtgaagttggtcacaatgctcttggggctggaaggatctttgctcaaggtgcaaagcttgttgacctagcccttgcctctgggaaaatctatgatggagaaggtttcaaatacgttcaagaatgttttgagaaaggaactctgcaccttattggtctcgtgagtgatgggggtgtccactccaggcttgaccaactgctgttgctactgaaaggtgctgctgagcgtggtgccaaaagaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggcttcatggagaccctcgagaatgatctagcaaaattaccgtggacaaggtgttgatgcccgggttgcatctggtggaggccgcatgtatgtcaccatggatcgttatgacaatgactggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42272" stop="40501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42100" g_stop="42033" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42032" i_stop="41933" i_length="100">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41932" g_stop="41805" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="197" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41804" i_stop="41327" i_length="478">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41326" g_stop="41176" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="348" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41175" i_stop="41004" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41003" g_stop="40800" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="553" r_length="205" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E706950" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42100" e_stop="42033"/>
          <exon e_start="41932" e_stop="41805"/>
          <exon e_start="41326" e_stop="41176"/>
          <exon e_start="41003" e_stop="40800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAA-CTCCTGTTATGGACTCACTCAAGAAGGTCTATTGGATTGGATTTCCTTCTTTTTGTGTTAAAGATTCTTGCTTTATGGATTTACGACTTGTTTATTTATCTGGGTTTTTGTTAAAATTAATTATAGGGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGGGTATGCGCTCTTTTCTTATAATCTTTTGTTTGCCTTTTGAAAAAAAAAATATGTTTTTACTTTAGAGATCTTGTAGGTTGTTGAATTTGAAATGTTGTTTTTGGATTATTATCTGTTAAGTTTGTTAGAAATTGGGCTGCTTAATGTTTTAGTGTAGTATAATAAATGCAACCAAGTTACTATGTCAATGCTTCCAATCAATATATTAGGAACAAATAGATCCTTCACATTTTCACTCCTTTATTGGCTTCACAATTGCTGTACCTCTGTACTACTCCCGCATCAGAGTGCAAATAGAATATTTTTTTAATACTTCCTAGTTCTAGCAACAATCGTGCTCAAGGACTTCTTTTTTTATTTGCCTGATTGATTTTATGCAATATCTGGGTTAGGGAAGCTATTTTAACGCGGGTTTGTATTTTTTTGTCCAAAAGTGTAGATTGTTGCTTGTTATCGTCTCTAATGTGTTTCCTTGCAGTGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTA-CGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG</genome_strand>
        <mrna_strand>GCGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACCTCCTGTTATGGACTCACTCAAGAAG....................................................................................................GGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG............................................................................................................................................................................TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACCGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGCCGCATGTATGTCACCATGGATCGTTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E347785" ref_strand="+" ref_description="SGN-E347785 [cTOF-26-J11]">
      <seq>ttgttttctccctacacacctttttgctctcttctctcttctctcttctataccgcttaagaatttttaagatctgagataatgggtagttcaggagatgcatggaaattgaaggaccatcctaagcttcctaagggaaagactgttgctgttattgttttggatggttggggtgaggctaaacctaatgagtataacgctatctctgttgctgaaactcctgttatggactcactcaagaagggtgctcctgaacattggagattgattaaggcacatggaaatgctgtggggcttcccacagaggatgatatgggtaacagtgaagttggtcacaatgctcttggggctggaaggatctttgctcaaggtgcaaagcttgttgacctagcccttgcctctgggaaaatctatgatggagaaggtttcaaatacgttcaagaatgttttgagaaaggaactctgcaccttattggtctcgtgagtgatgggggtgtccactccaggcttgaccaactgctgttgctactgaaaggtgctgctgagcgtggtgccaaaagaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggcttcatggagaccctcgagaatgatctagcaaaattacgtggacaaggtgttgatgccccggttgcatctggtggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42272" stop="40532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42214" g_stop="42033" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="243" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42032" i_stop="41933" i_length="100">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41932" g_stop="41805" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="371" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41804" i_stop="41327" i_length="478">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41326" g_stop="41176" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="522" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41175" i_stop="41004" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41003" g_stop="40832" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="694" r_length="172" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E347785" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42214" e_stop="42033"/>
          <exon e_start="41932" e_stop="41805"/>
          <exon e_start="41326" e_stop="41176"/>
          <exon e_start="41003" e_stop="40832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAGGTCTATTGGATTGGATTTCCTTCTTTTTGTGTTAAAGATTCTTGCTTTATGGATTTACGACTTGTTTATTTATCTGGGTTTTTGTTAAAATTAATTATAGGGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGGGTATGCGCTCTTTTCTTATAATCTTTTGTTTGCCTTTTGAAAAAAAAAATATGTTTTTACTTTAGAGATCTTGTAGGTTGTTGAATTTGAAATGTTGTTTTTGGATTATTATCTGTTAAGTTTGTTAGAAATTGGGCTGCTTAATGTTTTAGTGTAGTATAATAAATGCAACCAAGTTACTATGTCAATGCTTCCAATCAATATATTAGGAACAAATAGATCCTTCACATTTTCACTCCTTTATTGGCTTCACAATTGCTGTACCTCTGTACTACTCCCGCATCAGAGTGCAAATAGAATATTTTTTTAATACTTCCTAGTTCTAGCAACAATCGTGCTCAAGGACTTCTTTTTTTATTTGCCTGATTGATTTTATGCAATATCTGGGTTAGGGAAGCTATTTTAACGCGGGTTTGTATTTTTTTGTCCAAAAGTGTAGATTGTTGCTTGTTATCGTCTCTAATGTGTTTCCTTGCAGTGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAG</genome_strand>
        <mrna_strand>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAG....................................................................................................GGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG............................................................................................................................................................................TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCCGGTTGCATCTGGTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E285392" ref_strand="+" ref_description="SGN-E285392 [cLER-20-D8]">
      <seq>tttttgctctcttctctcttctctcttctataccgcttaagaatttttaagatctgagataatgggtagttcaggagatgcatggaaattgaaggaccatcctaagcttcctaagggaaagactgttgctgttattgttttggatggttggggtgaggctaaacctaatgagtataacgctatctctgttgctgaaactcctgttatggactcactcaagaagggtgctcctgaacattggagattgattaaggcacatggaaatgctgtggggcttcccacagaggatgatatgggtaacagtgaagttggtcacaatgctcttggggctggaaggatctttgctcaaggtgcaaagcttgttgacctagcccttgcctctgggaaaatctataatggagaaggtttcaaatacgttcaagaatgttatgagaaaggaactctgcaccttattggtctcgtgagtgatgggggtgtccactccaggcttgaccaactgctgttgctactgaaaggtgctgctgagcgtggtgccaaaagaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggcttcatggagaccctcgagaatgatctagcaaaattacgtggacaaggtgttgatgcccgggttgcatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42272" stop="40538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42214" g_stop="42033" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="223" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42032" i_stop="41933" i_length="100">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41932" g_stop="41805" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="351" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41804" i_stop="41327" i_length="478">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41326" g_stop="41176" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="502" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41175" i_stop="41004" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41003" g_stop="40838" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="668" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E285392" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42214" e_stop="42033"/>
          <exon e_start="41932" e_stop="41805"/>
          <exon e_start="41326" e_stop="41176"/>
          <exon e_start="41003" e_stop="40838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAGGTCTATTGGATTGGATTTCCTTCTTTTTGTGTTAAAGATTCTTGCTTTATGGATTTACGACTTGTTTATTTATCTGGGTTTTTGTTAAAATTAATTATAGGGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGGGTATGCGCTCTTTTCTTATAATCTTTTGTTTGCCTTTTGAAAAAAAAAATATGTTTTTACTTTAGAGATCTTGTAGGTTGTTGAATTTGAAATGTTGTTTTTGGATTATTATCTGTTAAGTTTGTTAGAAATTGGGCTGCTTAATGTTTTAGTGTAGTATAATAAATGCAACCAAGTTACTATGTCAATGCTTCCAATCAATATATTAGGAACAAATAGATCCTTCACATTTTCACTCCTTTATTGGCTTCACAATTGCTGTACCTCTGTACTACTCCCGCATCAGAGTGCAAATAGAATATTTTTTTAATACTTCCTAGTTCTAGCAACAATCGTGCTCAAGGACTTCTTTTTTTATTTGCCTGATTGATTTTATGCAATATCTGGGTTAGGGAAGCTATTTTAACGCGGGTTTGTATTTTTTTGTCCAAAAGTGTAGATTGTTGCTTGTTATCGTCTCTAATGTGTTTCCTTGCAGTGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTG</genome_strand>
        <mrna_strand>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAG....................................................................................................GGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATAATGGAGAAGGTTTCAAATACGTTCAAGAATGTTATGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG............................................................................................................................................................................TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-fEDEl4/sgn_ests_tomato" ref_id="SGN-E333731" ref_strand="+" ref_description="SGN-E333731 [cTOD-22-C12]">
      <seq>tctcttctctcttctataccgcttaagaatttttaagatctgagataatgggtagttcaggagatgcatggaaattgaaggaccatcctaagcttcctaagggaaagactgttgctgttattgttttggatggttggggtgaggctaaacctaatgagtataacgctatctctgttgctgaaactcctgttatggactcactcaagaagggtgctcctgaacattggagattgattaaggcacatggaaatgctgtggggcttcccacagaggatgatatgggtaacagtgaagttggtcacaatgctcttggggctggaaggatctttgctcaaggtgcaaagcttgttgacctagcccttgcctctgggaaaatctatgatggagaaggtttcaaatacgttcaagaatgttttgagaaaggaactctgcaccttattggtctcgtgagtgatgggggtgtccactccaggcttgaccaactgctgttgctactgaaaggtgctgctgagcgtggtgccaaaagaattcgtgtccatgccctcaccgatggacgtgatgttctggatggttctagtgtgggcttcatggagaccctcgagaatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0044H04-cuBma/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0044H04.2" temp_strand="-" temp_description="C07HBa0044H04.2  AC212614.2 htgs_phase:2 submitted_to_sgn_as:gi|167832397|gb|AC212614.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0044H04, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces">
        <position start="42272" stop="40582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42214" g_stop="42033" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="209" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42032" i_stop="41933" i_length="100">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41932" g_stop="41805" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="337" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41804" i_stop="41327" i_length="478">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41326" g_stop="41176" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="488" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41175" i_stop="41004" i_length="172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41003" g_stop="40882" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="610" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0044H04.2" gen_strand="-" ref_id="SGN-E333731" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0044H04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42214" e_stop="42033"/>
          <exon e_start="41932" e_stop="41805"/>
          <exon e_start="41326" e_stop="41176"/>
          <exon e_start="41003" e_stop="40882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAGGTCTATTGGATTGGATTTCCTTCTTTTTGTGTTAAAGATTCTTGCTTTATGGATTTACGACTTGTTTATTTATCTGGGTTTTTGTTAAAATTAATTATAGGGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGGGTATGCGCTCTTTTCTTATAATCTTTTGTTTGCCTTTTGAAAAAAAAAATATGTTTTTACTTTAGAGATCTTGTAGGTTGTTGAATTTGAAATGTTGTTTTTGGATTATTATCTGTTAAGTTTGTTAGAAATTGGGCTGCTTAATGTTTTAGTGTAGTATAATAAATGCAACCAAGTTACTATGTCAATGCTTCCAATCAATATATTAGGAACAAATAGATCCTTCACATTTTCACTCCTTTATTGGCTTCACAATTGCTGTACCTCTGTACTACTCCCGCATCAGAGTGCAAATAGAATATTTTTTTAATACTTCCTAGTTCTAGCAACAATCGTGCTCAAGGACTTCTTTTTTTATTTGCCTGATTGATTTTATGCAATATCTGGGTTAGGGAAGCTATTTTAACGCGGGTTTGTATTTTTTTGTCCAAAAGTGTAGATTGTTGCTTGTTATCGTCTCTAATGTGTTTCCTTGCAGTGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTGGTACGCCTGCCAGTTTTTAAACAATAGTGTCATGATTGATTATGTATTGCAGATACCTAATGTTGTCGCTCATTTTGAAAATCAATAAGAAGTTCTGTTTTCACTTGAATTTAATTAATCAATTTTTTCTAATGCCAAAAGATATGTATGTATAATCTTGCTTTGGTTGCAGTTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCT</genome_strand>
        <mrna_strand>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAG....................................................................................................GGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG............................................................................................................................................................................TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>55</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2704" PGL_stop="3503"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2704" e_stop="3503"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="2704" e_stop="3503" e_length="800"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2704" stop="3256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2772" stop="3503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379565" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATCTAATTAATAAATATATTAGTTATACACTATTAGCAATACACAGGCTATTATAAATGTACATTGATAAGCATGAGTAGTTATAGAACGATTTTTAATACATCAAATTAAATATTAGAAAAAAGTAATTTTAACATAACTAAATTCAATATTATTAATATATACTCTATCAAACGGTCTCATAATTTCCTAATTAACATACAACTTTTTCTTTTTTTCACCACATGCATTAGAAACAAACTCCAACACGTTTGATACCACTTGTTGAACCCCATTAGCACATGTTGTATCCACAACAAGTCTTGGAACCTCCACCCCAACATCATAATCCCAACACCCTTCATACCCTTCCAACAACTTCTCCATTTCTTGCCACGTGGATGGCTTATGCCAGCTTGAGCCATATTCCACCAGCTCACCCCTCAGCTCGAGCCGCCTACGCCACTTGGCTTGATCCCTCGGCTTGCACTCCACTACAACAACCTGAGCCCCACTATGATTCGCGATCTCAATGATCCGGTCAAGGTGAGCTCGACGTGAGAGTGGTGAGTCGATCACCACGCTCAGACCTAAGTCTAGCTGAGCGGAGGCGACTCGCCACATGGCATCGTATGATAGGTCATTGATGAGTTTTGTGGCTTTAGTGATTTGTTGAAGTGGTTTAGTGCAATCTTTGAAGTGATCTTTGTCTATAAGAGGACATTTTAGGGTTTTAGCTATGGATTGTGCAAGTGTGCTCTTACCTGTCCCTGGATGGCCTTTCATAGCCAAAATCATTGGCCTTTCTCCATATTTTC</gDNA_template>
            <first_frame> K  I  *  L  I  N  I  L  V  I  H  Y  *  Q  Y  T  G  Y  Y  K  C  T  L  I  S  M  S  S  Y  R  T  I  F  N  T  S  N  *  I  L  E  K  S  N  F  N  I  T  K  F  N  I  I  N  I  Y  S  I  K  R  S  H  N  F  L  I  N  I  Q  L  F  L  F  F  T  T  C  I  R  N  K  L  Q  H  V  *  Y  H  L  L  N  P  I  S  T  C  C  I  H  N  K  S  W  N  L  H  P  N  I  I  I  P  T  P  F  I  P  F  Q  Q  L  L  H  F  L  P  R  G  W  L  M  P  A  *  A  I  F  H  Q  L  T  P  Q  L  E  P  P  T  P  L  G  L  I  P  R  L  A  L  H  Y  N  N  L  S  P  T  M  I  R  D  L  N  D  P  V  K  V  S  S  T  *  E  W  *  V  D  H  H  A  Q  T  *  V  *  L  S  G  G  D  S  P  H  G  I  V  *  *  V  I  D  E  F  C  G  F  S  D  L  L  K  W  F  S  A  I  F  E  V  I  F  V  Y  K  R  T  F  *  G  F  S  Y  G  L  C  K  C  A  L  T  C  P  W  M  A  F  H  S  Q  N  H  W  P  F  S  I  F   </first_frame>
            <second_frame>  K  S  N  *  *  I  Y  *  L  Y  T  I  S  N  T  Q  A  I  I  N  V  H  *  *  A  *  V  V  I  E  R  F  L  I  H  Q  I  K  Y  *  K  K  V  I  L  T  *  L  N  S  I  L  L  I  Y  T  L  S  N  G  L  I  I  S  *  L  T  Y  N  F  F  F  F  S  P  H  A  L  E  T  N  S  N  T  F  D  T  T  C  *  T  P  L  A  H  V  V  S  T  T  S  L  G  T  S  T  P  T  S  *  S  Q  H  P  S  Y  P  S  N  N  F  S  I  S  C  H  V  D  G  L  C  Q  L  E  P  Y  S  T  S  S  P  L  S  S  S  R  L  R  H  L  A  *  S  L  G  L  H  S  T  T  T  T  *  A  P  L  *  F  A  I  S  M  I  R  S  R  *  A  R  R  E  S  G  E  S  I  T  T  L  R  P  K  S  S  *  A  E  A  T  R  H  M  A  S  Y  D  R  S  L  M  S  F  V  A  L  V  I  C  *  S  G  L  V  Q  S  L  K  *  S  L  S  I  R  G  H  F  R  V  L  A  M  D  C  A  S  V  L  L  P  V  P  G  W  P  F  I  A  K  I  I  G  L  S  P  Y  F  </second_frame>
            <third_frame>   N  L  I  N  K  Y  I  S  Y  T  L  L  A  I  H  R  L  L  *  M  Y  I  D  K  H  E  *  L  *  N  D  F  *  Y  I  K  L  N  I  R  K  K  *  F  *  H  N  *  I  Q  Y  Y  *  Y  I  L  Y  Q  T  V  S  *  F  P  N  *  H  T  T  F  S  F  F  H  H  M  H  *  K  Q  T  P  T  R  L  I  P  L  V  E  P  H  *  H  M  L  Y  P  Q  Q  V  L  E  P  P  P  Q  H  H  N  P  N  T  L  H  T  L  P  T  T  S  P  F  L  A  T  W  M  A  Y  A  S  L  S  H  I  P  P  A  H  P  S  A  R  A  A  Y  A  T  W  L  D  P  S  A  C  T  P  L  Q  Q  P  E  P  H  Y  D  S  R  S  Q  *  S  G  Q  G  E  L  D  V  R  V  V  S  R  S  P  R  S  D  L  S  L  A  E  R  R  R  L  A  T  W  H  R  M  I  G  H  *  *  V  L  W  L  *  *  F  V  E  V  V  *  C  N  L  *  S  D  L  C  L  *  E  D  I  L  G  F  *  L  W  I  V  Q  V  C  S  Y  L  S  L  D  G  L  S  *  P  K  S  L  A  F  L  H  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2985" stop="3221"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HMLYPQQVLEPPPQHHNPNTLHTLPTTSPFLATWMAYASLSHIPPAHPSARAAYATWLDPSACTPLQQPEPHYDSRSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="3518" PGL_stop="2777"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3518" e_stop="2777"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="3518" e_stop="2777" e_length="742"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3518" stop="3083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3517" stop="2783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3517" stop="3024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3433" stop="2777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3403" stop="2778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212029" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAAATGGACAATGGAAAATATGGAGAAAGGCCAATGATTTTGGCTATGAAAGGCCATCCAGGGACAGGTAAGAGCACACTTGCACAATCCATAGCTAAAACCCTAAAATGTCCTCTTATAGACAAAGATCACTTCAAAGATTGCACTAAACCACTTCAACAAATCACTAAAGCCACAAAACTCATCAATGACCTATCATACGATGCCATGTGGCGAGTCGCCTCCGCTCAGCTAGACTTAGGTCTGAGCGTGGTGATCGACTCACCACTCTCACGTCGAGCTCACCTTGACCGGATCATTGAGATCGCGAATCATAGTGGGGCTCAGGTTGTTGTAGTGGAGTGCAAGCCGAGGGATCAAGCCAAGTGGCGTAGGCGGCTCGAGCTGAGGGGTGAGCTGGTGGAATATGGCTCAAGCTGGCATAAGCCATCCACGTGGCAAGAAATGGAGAAGTTGTTGGAAGGGTATGAAGGGTGTTGGGATTATGATGTTGGGGTGGAGGTTCCAAGACTTGTTGTGGATACAACATGTGCTAATGGGGTTCAACAAGTGGTATCAAACGTGTTGGAGTTTGTTTCTAATGCATGTGGTGAAAAAAAGAAAAAGTTGTATGTTAATTAGGAAATTATGAGACCGTTTGATAGAGTATATATTAATAATATTGAATTTAGTTATGTTAAAATTACTTTTTTCTAATATTTAATTTGATGTATTAAAAATCGTTCTATAACTACTCATGC</gDNA_template>
            <first_frame> I  K  W  T  M  E  N  M  E  K  G  Q  *  F  W  L  *  K  A  I  Q  G  Q  V  R  A  H  L  H  N  P  *  L  K  P  *  N  V  L  L  *  T  K  I  T  S  K  I  A  L  N  H  F  N  K  S  L  K  P  Q  N  S  S  M  T  Y  H  T  M  P  C  G  E  S  P  P  L  S  *  T  *  V  *  A  W  *  S  T  H  H  S  H  V  E  L  T  L  T  G  S  L  R  S  R  I  I  V  G  L  R  L  L  *  W  S  A  S  R  G  I  K  P  S  G  V  G  G  S  S  *  G  V  S  W  W  N  M  A  Q  A  G  I  S  H  P  R  G  K  K  W  R  S  C  W  K  G  M  K  G  V  G  I  M  M  L  G  W  R  F  Q  D  L  L  W  I  Q  H  V  L  M  G  F  N  K  W  Y  Q  T  C  W  S  L  F  L  M  H  V  V  K  K  R  K  S  C  M  L  I  R  K  L  *  D  R  L  I  E  Y  I  L  I  I  L  N  L  V  M  L  K  L  L  F  S  N  I  *  F  D  V  L  K  I  V  L  *  L  L  M  </first_frame>
            <second_frame>  S  N  G  Q  W  K  I  W  R  K  A  N  D  F  G  Y  E  R  P  S  R  D  R  *  E  H  T  C  T  I  H  S  *  N  P  K  M  S  S  Y  R  Q  R  S  L  Q  R  L  H  *  T  T  S  T  N  H  *  S  H  K  T  H  Q  *  P  I  I  R  C  H  V  A  S  R  L  R  S  A  R  L  R  S  E  R  G  D  R  L  T  T  L  T  S  S  S  P  *  P  D  H  *  D  R  E  S  *  W  G  S  G  C  C  S  G  V  Q  A  E  G  S  S  Q  V  A  *  A  A  R  A  E  G  *  A  G  G  I  W  L  K  L  A  *  A  I  H  V  A  R  N  G  E  V  V  G  R  V  *  R  V  L  G  L  *  C  W  G  G  G  S  K  T  C  C  G  Y  N  M  C  *  W  G  S  T  S  G  I  K  R  V  G  V  C  F  *  C  M  W  *  K  K  E  K  V  V  C  *  L  G  N  Y  E  T  V  *  *  S  I  Y  *  *  Y  *  I  *  L  C  *  N  Y  F  F  L  I  F  N  L  M  Y  *  K  S  F  Y  N  Y  S  C </second_frame>
            <third_frame>   Q  M  D  N  G  K  Y  G  E  R  P  M  I  L  A  M  K  G  H  P  G  T  G  K  S  T  L  A  Q  S  I  A  K  T  L  K  C  P  L  I  D  K  D  H  F  K  D  C  T  K  P  L  Q  Q  I  T  K  A  T  K  L  I  N  D  L  S  Y  D  A  M  W  R  V  A  S  A  Q  L  D  L  G  L  S  V  V  I  D  S  P  L  S  R  R  A  H  L  D  R  I  I  E  I  A  N  H  S  G  A  Q  V  V  V  V  E  C  K  P  R  D  Q  A  K  W  R  R  R  L  E  L  R  G  E  L  V  E  Y  G  S  S  W  H  K  P  S  T  W  Q  E  M  E  K  L  L  E  G  Y  E  G  C  W  D  Y  D  V  G  V  E  V  P  R  L  V  V  D  T  T  C  A  N  G  V  Q  Q  V  V  S  N  V  L  E  F  V  S  N  A  C  G  E  K  K  K  K  L  Y  V  N  *  E  I  M  R  P  F  D  R  V  Y  I  N  N  I  E  F  S  Y  V  K  I  T  F  F  *  Y  L  I  *  C  I  K  N  R  S  I  T  T  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3516" stop="2896"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMDNGKYGERPMILAMKGHPGTGKSTLAQSIAKTLKCPLIDKDHFKDCTKPLQQITKATKLINDLSYDAMWRVASAQLDLGLSVVIDSPLSRRAHLDRIIEIANHSGAQVVVVECKPRDQAKWRRRLELRGELVEYGSSWHKPSTWQEMEKLLEGYEGCWDYDVGVEVPRLVVDTTCANGVQQVVSNVLEFVSNACGEKKKKLYVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="13326" PGL_stop="13128"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13326" e_stop="13128"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="13326" e_stop="13128" e_length="199"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13326" stop="13128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCCTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTTATGTATTTTAGCTTCTTAGACATTTTTAGTTAGTAATTTGATCATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTATTGA</gDNA_template>
            <first_frame> S  L  H  R  I  S  G  *  A  N  A  S  S  L  D  W  I  F  F  L  M  S  *  C  L  E  V  P  A  W  T  S  F  L  C  I  L  A  S  *  T  F  L  V  S  N  L  I  I  D  V  L  V  M  M  T  S  R  F  W  G  *  *  *  L  L  </first_frame>
            <second_frame>  H  Y  I  G  F  Q  G  E  L  T  L  L  A  W  T  G  S  S  S  S  C  L  D  A  L  K  F  R  H  G  L  A  F  Y  V  F  *  L  L  R  H  F  *  L  V  I  *  S  *  M  F  L  *  *  *  L  P  D  F  G  D  N  N  S  Y  * </second_frame>
            <third_frame>   I  T  S  D  F  R  V  S  *  R  F  *  L  G  L  D  L  L  P  H  V  L  M  P  *  S  S  G  M  D  *  L  F  M  Y  F  S  F  L  D  I  F  S  *  *  F  D  H  R  C  S  C  D  D  D  F  Q  I  L  G  I  I  I  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0044H04.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="14071" PGL_stop="13380"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14071" e_stop="13896"/>
            <exon e_start="13817" e_stop="13380"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.955"/>
          <exon-only e_score="0.899"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="14071" e_stop="13896" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13895" i_stop="13818" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="0.899">
            <gDNA_exon_boundary e_start="13817" e_stop="13380" e_length="438"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14071" stop="13896"/>
              <exon start="13817" stop="13472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13616" stop="13380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCAGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAG : GATAGAATATGGATCGGGTGTCACGTTTCGACACCAGGATAGAATATGGATCAGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAAGATAATGAATCTTGAAAGATGTTAATATATTCAATCTAATGAACCGAAATCCCAAATGAGCATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTGTACTGACCCCCTACTTTTATGTTTTCTTTCCTTGTTATTTGTG</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  S  E  I  R  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R :   I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  R  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  K  I  M  N  L  E  R  C  *  Y  I  Q  S  N  E  P  K  S  Q  M  S  M  M  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  V  L  T  P  Y  F  Y  V  F  F  P  C  Y  L   </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  *  M  K  V  V  R  L  G  D  Q  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P   : G  *  N  M  D  R  V  S  R  F  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  R  *  *  I  L  K  D  V  N  I  F  N  L  M  N  R  N  P  K  *  A  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  L  Y  *  P  P  T  F  M  F  S  F  L  V  I  C  </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  *  K  *  *  D  *  G  I  R  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  :  D  R  I  W  I  G  C  H  V  S  T  P  G  *  N  M  D  Q  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  E  I  P  N  E  H  D  E  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  C  T  D  P  L  L  L  C  F  L  S  L  L  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0044H04.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="16486" PGL_stop="16084"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16486" e_stop="16084"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="16486" e_stop="16084" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16486" stop="16084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220638" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16396" stop="16084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220527" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTATATATGGCACAGAGGCTCAGGTGAACTTGTTGCGACACTGGCTGGACATTCAGGGGCGGTGAACTGTGTTAGCTGGAACCCAACAAATCCTCATATGCTGGCATCTGCGAGTGATGATGGTACAATTCGTATATGGGGCGATAATCGAGTAAACACAAAGCAACATGACACTGCTAATGGTGTGAACTACTGCAATGGGCGAAGTTGAACTCTGAGATGCAAAAGGGCAGCGTGTAACGTTACAAATATCTTTCATCGCTATCACTGGTTTCTGTGTATATTCTGTATGTTCATGTCGAATCAACATTTATGACAAACAAGAATGTGAAATTTGCATTCAGTCCATTAATAAATCGTGTACTCTTTCCTCCATATTTTAGATTTTCTTTTCCATTTAA</gDNA_template>
            <first_frame> V  Y  I  W  H  R  G  S  G  E  L  V  A  T  L  A  G  H  S  G  A  V  N  C  V  S  W  N  P  T  N  P  H  M  L  A  S  A  S  D  D  G  T  I  R  I  W  G  D  N  R  V  N  T  K  Q  H  D  T  A  N  G  V  N  Y  C  N  G  R  S  *  T  L  R  C  K  R  A  A  C  N  V  T  N  I  F  H  R  Y  H  W  F  L  C  I  F  C  M  F  M  S  N  Q  H  L  *  Q  T  R  M  *  N  L  H  S  V  H  *  *  I  V  Y  S  F  L  H  I  L  D  F  L  F  H  L  </first_frame>
            <second_frame>  F  I  Y  G  T  E  A  Q  V  N  L  L  R  H  W  L  D  I  Q  G  R  *  T  V  L  A  G  T  Q  Q  I  L  I  C  W  H  L  R  V  M  M  V  Q  F  V  Y  G  A  I  I  E  *  T  Q  S  N  M  T  L  L  M  V  *  T  T  A  M  G  E  V  E  L  *  D  A  K  G  Q  R  V  T  L  Q  I  S  F  I  A  I  T  G  F  C  V  Y  S  V  C  S  C  R  I  N  I  Y  D  K  Q  E  C  E  I  C  I  Q  S  I  N  K  S  C  T  L  S  S  I  F  *  I  F  F  S  I  * </second_frame>
            <third_frame>   L  Y  M  A  Q  R  L  R  *  T  C  C  D  T  G  W  T  F  R  G  G  E  L  C  *  L  E  P  N  K  S  S  Y  A  G  I  C  E  *  *  W  Y  N  S  Y  M  G  R  *  S  S  K  H  K  A  T  *  H  C  *  W  C  E  L  L  Q  W  A  K  L  N  S  E  M  Q  K  G  S  V  *  R  Y  K  Y  L  S  S  L  S  L  V  S  V  Y  I  L  Y  V  H  V  E  S  T  F  M  T  N  K  N  V  K  F  A  F  S  P  L  I  N  R  V  L  F  P  P  Y  F  R  F  S  F  P  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16486" stop="16274"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYIWHRGSGELVATLAGHSGAVNCVSWNPTNPHMLASASDDGTIRIWGDNRVNTKQHDTANGVNYCNGRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="29248" PGL_stop="17965"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29248" e_stop="29014"/>
            <exon e_start="27073" e_stop="26201"/>
            <exon e_start="22266" e_stop="22165"/>
            <exon e_start="18510" e_stop="17965"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.016" acc_prob="0.991" e_score="0.983"/>
          <exon-intron don_prob="0.974" acc_prob="0.713" e_score="0.989"/>
          <exon-intron don_prob="0.992" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="29248" e_stop="29014" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.016" acc_prob="0.991">
            <gDNA_intron_boundary i_start="29013" i_stop="27074" i_length="1940"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="27073" e_stop="26201" e_length="873"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.713">
            <gDNA_intron_boundary i_start="26200" i_stop="22267" i_length="3934"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22266" e_stop="22165" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.969">
            <gDNA_intron_boundary i_start="22164" i_stop="18511" i_length="3654"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="18510" e_stop="17965" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29248" stop="29014"/>
              <exon start="27073" stop="26575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29247" stop="29014"/>
              <exon start="27073" stop="26596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29241" stop="29014"/>
              <exon start="27073" stop="26418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26576" stop="26201"/>
              <exon start="22266" stop="22165"/>
              <exon start="18510" stop="18296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26354" stop="26201"/>
              <exon start="22266" stop="22165"/>
              <exon start="18510" stop="17965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711021" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCAAACAACTCTTTCCTCCCATTTCTCTATTCACAAGTTCTCCATTACACAAATACTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGT : GATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATGAGGTTGTTGGTACAAAAGGAGTTGTCAAGAAAGTTGAATTTGTTCGGATTATAACTGAGGCATTAGATTCTCTTGGTTACAAAAAGACTCGGGCCTTACTAGAGGAAGAGTCAGGGATACCCTTGCACACTTCCGTCGTAAATTTGTTTATGCAGCAAATTCTTGATGGTAAATGGGATGAAAGTTTAAACACATTGCGAAATATTGGTCTGGTGGATGAAAAAATTGTAAAGTTGGCATCTTTTGTGATATTGGAGCAGAAGTTTTTTGAATTGTTGCACAAGGAAAAAGTTATGGATGCTCTGAGGACACTGAGGGGCGAGATCTCACCTCTTTGCATAAACAATGATAGAGTCCATCAGCTTTCGTTTTTCATTATATCACCTTCTCAGCAGGTTCTTACTGGGGTATCAGGTCAAGGCACAGCGAGAGTAAAGTCACGTACAGAGCTACTAGAGGAATTGCAAAGATTGCTTCCCCCAACAGTTATGGTTCCAGAAAAGAGATTGGTACATCTTGTTGAACAAGCTCTTGACTTGCAACTAGATGCTTGTAGATTTCACAACTCTGTGGTTGGTGAAATGTCACTGCTCAGTGATCATCACTGCGGAAGAGATCATATTCCATCTCTAACAATGCAG : ATATTACATGAACATAAAGATGAAGTCTGGTTCTTGCAGTTTTCCCATAATGGAAAGTACTTAGCCTCGTCATCTGCCGATTTTGCCGTAATTATATGGGAG : GTCAAATTGGATGGCAGTGTCTGCATGAAACACAGACTTTTGGGTCACGAGACATATGTCTCGTATATATCATGGAGTCCTGATGACCATCAGCTTCTCACTTGTGGTGAAGAGGAAGCTGTCATTCGGTGGGATGTCGAGTCTGGTGTACGTATACACACTTATGAGAAAAAATTTGTTAAGTTTATCTCATGCGGCTGGGCTCCTGATGGAAAAAGGATATTCTGTGGTGTAACTGACAAAAGCATTAGCATGTGGGATTTGGAAGGGAAAGAGCTTGAGTGTTGGAAAGGCCACAGGGCTACTAGAATATCGGACTTGGGGATAACAAGTGATGGGAAGCATGTTATCTCTGTTTGTAAAGAAAATATGATAGTATTAGTTGGATGGGAATCAAAAGTAGAGAGAGTAATTCAGGAGGATCAGGCAATAACCTCATTTGTATTGTCCATGGACAGTAAGTATGTGTTGGTTAGTCTTTCAAACCAAGAAATTCATCTCTGGAATATCGAGGGAACTGTAAAACTTGTAGCCAAATATAAGGGG</gDNA_template>
            <first_frame> C  K  Q  L  F  P  P  I  S  L  F  T  S  S  P  L  H  K  Y  S  N  L  S  T  R  F  L  L  S  T  I  N  H  I  P  F  L  A  F  N  R  L  L  V  Y  P  P  N  L  L  V  L  A  Y  R  Q  T  R  G  N  K  R  I  Q  F  G  I  K  P  F  A  I  C  W  F  F  N  Q   : *  F  R  P  T  I  P  T  F  Q  F  C  L  P  P  A  V  I  Y  G  L  T  R  L  F  H  G  S  *  G  R  *  *  T  T  I  K  T  C  E  G  I  L  Q  S  I  G  R  Y  F  *  Q  D  I  C  *  R  S  C  K  L  F  I  G  *  L  D  G  S  T  P  D  S  S  R  G  R  *  G  C  W  Y  K  R  S  C  Q  E  S  *  I  C  S  D  Y  N  *  G  I  R  F  S  W  L  Q  K  D  S  G  L  T  R  G  R  V  R  D  T  L  A  H  F  R  R  K  F  V  Y  A  A  N  S  *  W  *  M  G  *  K  F  K  H  I  A  K  Y  W  S  G  G  *  K  N  C  K  V  G  I  F  C  D  I  G  A  E  V  F  *  I  V  A  Q  G  K  S  Y  G  C  S  E  D  T  E  G  R  D  L  T  S  L  H  K  Q  *  *  S  P  S  A  F  V  F  H  Y  I  T  F  S  A  G  S  Y  W  G  I  R  S  R  H  S  E  S  K  V  T  Y  R  A  T  R  G  I  A  K  I  A  S  P  N  S  Y  G  S  R  K  E  I  G  T  S  C  *  T  S  S  *  L  A  T  R  C  L  *  I  S  Q  L  C  G  W  *  N  V  T  A  Q  *  S  S  L  R  K  R  S  Y  S  I  S  N  N  A   : D  I  T  *  T  *  R  *  S  L  V  L  A  V  F  P  *  W  K  V  L  S  L  V  I  C  R  F  C  R  N  Y  M  G   : G  Q  I  G  W  Q  C  L  H  E  T  Q  T  F  G  S  R  D  I  C  L  V  Y  I  M  E  S  *  *  P  S  A  S  H  L  W  *  R  G  S  C  H  S  V  G  C  R  V  W  C  T  Y  T  H  L  *  E  K  I  C  *  V  Y  L  M  R  L  G  S  *  W  K  K  D  I  L  W  C  N  *  Q  K  H  *  H  V  G  F  G  R  E  R  A  *  V  L  E  R  P  Q  G  Y  *  N  I  G  L  G  D  N  K  *  W  E  A  C  Y  L  C  L  *  R  K  Y  D  S  I  S  W  M  G  I  K  S  R  E  S  N  S  G  G  S  G  N  N  L  I  C  I  V  H  G  Q  *  V  C  V  G  *  S  F  K  P  R  N  S  S  L  E  Y  R  G  N  C  K  T  C  S  Q  I  *  G  </first_frame>
            <second_frame>  A  N  N  S  F  L  P  F  L  Y  S  Q  V  L  H  Y  T  N  T  Q  I  S  L  Q  D  S  Y  S  Q  Q  S  I  I  Y  L  F  *  L  S  I  D  C  L  F  T  H  L  I  Y  *  S  *  L  T  D  K  R  E  G  I  K  E  Y  N  L  G  *  N  H  L  R  F  A  G  F  S  I  S  :  D  L  G  L  L  F  Q  L  F  S  F  V  F  L  L  L  L  Y  M  G  *  R  V  C  F  M  G  A  E  D  D  D  E  P  P  S  K  R  V  K  V  S  S  S  Q  L  V  D  I  S  D  R  T  F  V  R  D  P  V  S  C  S  L  G  D  S  M  A  R  P  L  T  L  Q  G  D  D  E  V  V  G  T  K  G  V  V  K  K  V  E  F  V  R  I  I  T  E  A  L  D  S  L  G  Y  K  K  T  R  A  L  L  E  E  E  S  G  I  P  L  H  T  S  V  V  N  L  F  M  Q  Q  I  L  D  G  K  W  D  E  S  L  N  T  L  R  N  I  G  L  V  D  E  K  I  V  K  L  A  S  F  V  I  L  E  Q  K  F  F  E  L  L  H  K  E  K  V  M  D  A  L  R  T  L  R  G  E  I  S  P  L  C  I  N  N  D  R  V  H  Q  L  S  F  F  I  I  S  P  S  Q  Q  V  L  T  G  V  S  G  Q  G  T  A  R  V  K  S  R  T  E  L  L  E  E  L  Q  R  L  L  P  P  T  V  M  V  P  E  K  R  L  V  H  L  V  E  Q  A  L  D  L  Q  L  D  A  C  R  F  H  N  S  V  V  G  E  M  S  L  L  S  D  H  H  C  G  R  D  H  I  P  S  L  T  M  Q  :  I  L  H  E  H  K  D  E  V  W  F  L  Q  F  S  H  N  G  K  Y  L  A  S  S  S  A  D  F  A  V  I  I  W  E  :  V  K  L  D  G  S  V  C  M  K  H  R  L  L  G  H  E  T  Y  V  S  Y  I  S  W  S  P  D  D  H  Q  L  L  T  C  G  E  E  E  A  V  I  R  W  D  V  E  S  G  V  R  I  H  T  Y  E  K  K  F  V  K  F  I  S  C  G  W  A  P  D  G  K  R  I  F  C  G  V  T  D  K  S  I  S  M  W  D  L  E  G  K  E  L  E  C  W  K  G  H  R  A  T  R  I  S  D  L  G  I  T  S  D  G  K  H  V  I  S  V  C  K  E  N  M  I  V  L  V  G  W  E  S  K  V  E  R  V  I  Q  E  D  Q  A  I  T  S  F  V  L  S  M  D  S  K  Y  V  L  V  S  L  S  N  Q  E  I  H  L  W  N  I  E  G  T  V  K  L  V  A  K  Y  K  G </second_frame>
            <third_frame>   Q  T  T  L  S  S  H  F  S  I  H  K  F  S  I  T  Q  I  L  K  S  L  Y  K  I  L  T  L  N  N  Q  S  Y  T  F  F  S  F  Q  S  T  A  C  L  P  T  *  S  T  S  L  S  L  P  T  N  E  R  E  *  K  N  T  I  W  D  K  T  I  C  D  L  L  V  F  Q  S  V :   I  *  A  Y  Y  S  N  F  S  V  L  S  S  S  C  C  Y  I  W  A  D  A  F  V  S  W  E  L  R  T  M  M  N  H  H  Q  N  V  *  R  Y  P  P  V  N  W  *  I  F  L  T  G  H  L  L  E  I  L  *  V  V  H  W  V  T  R  W  L  D  P  *  L  F  K  G  T  M  R  L  L  V  Q  K  E  L  S  R  K  L  N  L  F  G  L  *  L  R  H  *  I  L  L  V  T  K  R  L  G  P  Y  *  R  K  S  Q  G  Y  P  C  T  L  P  S  *  I  C  L  C  S  K  F  L  M  V  N  G  M  K  V  *  T  H  C  E  I  L  V  W  W  M  K  K  L  *  S  W  H  L  L  *  Y  W  S  R  S  F  L  N  C  C  T  R  K  K  L  W  M  L  *  G  H  *  G  A  R  S  H  L  F  A  *  T  M  I  E  S  I  S  F  R  F  S  L  Y  H  L  L  S  R  F  L  L  G  Y  Q  V  K  A  Q  R  E  *  S  H  V  Q  S  Y  *  R  N  C  K  D  C  F  P  Q  Q  L  W  F  Q  K  R  D  W  Y  I  L  L  N  K  L  L  T  C  N  *  M  L  V  D  F  T  T  L  W  L  V  K  C  H  C  S  V  I  I  T  A  E  E  I  I  F  H  L  *  Q  C  R :   Y  Y  M  N  I  K  M  K  S  G  S  C  S  F  P  I  M  E  S  T  *  P  R  H  L  P  I  L  P  *  L  Y  G  R :   S  N  W  M  A  V  S  A  *  N  T  D  F  W  V  T  R  H  M  S  R  I  Y  H  G  V  L  M  T  I  S  F  S  L  V  V  K  R  K  L  S  F  G  G  M  S  S  L  V  Y  V  Y  T  L  M  R  K  N  L  L  S  L  S  H  A  A  G  L  L  M  E  K  G  Y  S  V  V  *  L  T  K  A  L  A  C  G  I  W  K  G  K  S  L  S  V  G  K  A  T  G  L  L  E  Y  R  T  W  G  *  Q  V  M  G  S  M  L  S  L  F  V  K  K  I  *  *  Y  *  L  D  G  N  Q  K  *  R  E  *  F  R  R  I  R  Q  *  P  H  L  Y  C  P  W  T  V  S  M  C  W  L  V  F  Q  T  K  K  F  I  S  G  I  S  R  E  L  *  N  L  *  P  N  I  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27010" stop="26201"/>
                    <exon start="22266" stop="22165"/>
                    <exon start="18510" stop="17965"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1458</number_coding_nucleotides>
                  <number_encoded_amino_acids>486</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVCFMGAEDDDEPPSKRVKVSSSQLVDISDRTFVRDPVSCSLGDSMARPLTLQGDDEVVGTKGVVKKVEFVRIITEALDSLGYKKTRALLEEESGIPLHTSVVNLFMQQILDGKWDESLNTLRNIGLVDEKIVKLASFVILEQKFFELLHKEKVMDALRTLRGEISPLCINNDRVHQLSFFIISPSQQVLTGVSGQGTARVKSRTELLEELQRLLPPTVMVPEKRLVHLVEQALDLQLDACRFHNSVVGEMSLLSDHHCGRDHIPSLTMQILHEHKDEVWFLQFSHNGKYLASSSADFAVIIWEVKLDGSVCMKHRLLGHETYVSYISWSPDDHQLLTCGEEEAVIRWDVESGVRIHTYEKKFVKFISCGWAPDGKRIFCGVTDKSISMWDLEGKELECWKGHRATRISDLGITSDGKHVISVCKENMIVLVGWESKVERVIQEDQAITSFVLSMDSKYVLVSLSNQEIHLWNIEGTVKLVAKYKG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29248" stop="29014"/>
                    <exon start="27073" stop="27072"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CKQLFPPISLFTSSPLHKYSNLSTRFLLSTINHIPFLAFNRLLVYPPNLLVLAYRQTRGNKRIQFGIKPFAICWFFNQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29242" e_stop="28933"/>
            <exon e_start="27073" e_stop="26842"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="0.987"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="29242" e_stop="28933" e_length="310"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="28932" i_stop="27074" i_length="1859"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27073" e_stop="26842" e_length="232"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29242" stop="28933"/>
              <exon start="27073" stop="26842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331285" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACTCTTTCCTCCCATTTCTCTATTCACAAGTTCTCCATTACACAAATACTCAAATCTCTCTACAAGATTCTTACTCTCAACAATCAATCATATACCTTTTTTAGCTTTCAATCGACTGCTTGTTTACCCACCTAATCTACTAGTCTTAGCTTACCGACAAACGAGAGGGAATAAAAGAATACAATTTGGGATAAAACCATTTGCGATTTGCTGGTTTTTCAATCAGTGTATGTATCCATTTTGATCTGAATCTTCAAATTGCTTTATGGGTATTGCAGATTCTTTTCTAATCTTTTGTTGATTTTCTG : GATTTAGGCCTACTATTCCAACTTTTCAGTTTTGTCTTCCTCCTGCTGTTATATATGGGCTGACGCGTTTGTTTCATGGGAGCTGAGGACGATGATGAACCACCATCAAAACGTGTGAAGGTATCCTCCAGTCAATTGGTAGATATTTCTGACAGGACATTTGTTAGAGATCCTGTAAGTTGTTCATTGGGTGACTCGATGGCTCGACCCCTGACTCTTCAAGGGGACGATG</gDNA_template>
            <first_frame> Q  L  F  P  P  I  S  L  F  T  S  S  P  L  H  K  Y  S  N  L  S  T  R  F  L  L  S  T  I  N  H  I  P  F  L  A  F  N  R  L  L  V  Y  P  P  N  L  L  V  L  A  Y  R  Q  T  R  G  N  K  R  I  Q  F  G  I  K  P  F  A  I  C  W  F  F  N  Q  C  M  Y  P  F  *  S  E  S  S  N  C  F  M  G  I  A  D  S  F  L  I  F  C  *  F  S   : G  F  R  P  T  I  P  T  F  Q  F  C  L  P  P  A  V  I  Y  G  L  T  R  L  F  H  G  S  *  G  R  *  *  T  T  I  K  T  C  E  G  I  L  Q  S  I  G  R  Y  F  *  Q  D  I  C  *  R  S  C  K  L  F  I  G  *  L  D  G  S  T  P  D  S  S  R  G  R   </first_frame>
            <second_frame>  N  S  F  L  P  F  L  Y  S  Q  V  L  H  Y  T  N  T  Q  I  S  L  Q  D  S  Y  S  Q  Q  S  I  I  Y  L  F  *  L  S  I  D  C  L  F  T  H  L  I  Y  *  S  *  L  T  D  K  R  E  G  I  K  E  Y  N  L  G  *  N  H  L  R  F  A  G  F  S  I  S  V  C  I  H  F  D  L  N  L  Q  I  A  L  W  V  L  Q  I  L  F  *  S  F  V  D  F  L  :  D  L  G  L  L  F  Q  L  F  S  F  V  F  L  L  L  L  Y  M  G  *  R  V  C  F  M  G  A  E  D  D  D  E  P  P  S  K  R  V  K  V  S  S  S  Q  L  V  D  I  S  D  R  T  F  V  R  D  P  V  S  C  S  L  G  D  S  M  A  R  P  L  T  L  Q  G  D  D  </second_frame>
            <third_frame>   T  L  S  S  H  F  S  I  H  K  F  S  I  T  Q  I  L  K  S  L  Y  K  I  L  T  L  N  N  Q  S  Y  T  F  F  S  F  Q  S  T  A  C  L  P  T  *  S  T  S  L  S  L  P  T  N  E  R  E  *  K  N  T  I  W  D  K  T  I  C  D  L  L  V  F  Q  S  V  Y  V  S  I  L  I  *  I  F  K  L  L  Y  G  Y  C  R  F  F  S  N  L  L  L  I  F  W :   I  *  A  Y  Y  S  N  F  S  V  L  S  S  S  C  C  Y  I  W  A  D  A  F  V  S  W  E  L  R  T  M  M  N  H  H  Q  N  V  *  R  Y  P  P  V  N  W  *  I  F  L  T  G  H  L  L  E  I  L  *  V  V  H  W  V  T  R  W  L  D  P  *  L  F  K  G  T  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29242" stop="28997"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLFPPISLFTSSPLHKYSNLSTRFLLSTINHIPFLAFNRLLVYPPNLLVLAYRQTRGNKRIQFGIKPFAICWFFNQCMYPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="42214" PGL_stop="36719"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42214" e_stop="42033"/>
            <exon e_start="41932" e_stop="41805"/>
            <exon e_start="41326" e_stop="41176"/>
            <exon e_start="41003" e_stop="40800"/>
            <exon e_start="39600" e_stop="39176"/>
            <exon e_start="38871" e_stop="38679"/>
            <exon e_start="38590" e_stop="38495"/>
            <exon e_start="37991" e_stop="37836"/>
            <exon e_start="37216" e_stop="36719"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.657" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42214" e_stop="42033" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="42032" i_stop="41933" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41932" e_stop="41805" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41804" i_stop="41327" i_length="478"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41326" e_stop="41176" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41175" i_stop="41004" i_length="172"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41003" e_stop="40800" e_length="204"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="40799" i_stop="39601" i_length="1199"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39600" e_stop="39176" e_length="425"/>
          </exon>
          <intron i_serial="5" don_prob="0.657" acc_prob="0.945">
            <gDNA_intron_boundary i_start="39175" i_stop="38872" i_length="304"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38871" e_stop="38679" e_length="193"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="38678" i_stop="38591" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="38590" e_stop="38495" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="38494" i_stop="37992" i_length="503"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="37991" e_stop="37836" e_length="156"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37835" i_stop="37217" i_length="619"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="37216" e_stop="36719" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42214" stop="42033"/>
              <exon start="41932" stop="41805"/>
              <exon start="41326" stop="41176"/>
              <exon start="41003" stop="40800"/>
              <exon start="39600" stop="39450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42214" stop="42033"/>
              <exon start="41932" stop="41805"/>
              <exon start="41326" stop="41176"/>
              <exon start="41003" stop="40800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42214" stop="42033"/>
              <exon start="41932" stop="41805"/>
              <exon start="41326" stop="41176"/>
              <exon start="41003" stop="40832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42214" stop="42033"/>
              <exon start="41932" stop="41805"/>
              <exon start="41326" stop="41176"/>
              <exon start="41003" stop="40838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42214" stop="42033"/>
              <exon start="41932" stop="41805"/>
              <exon start="41326" stop="41176"/>
              <exon start="41003" stop="40882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42156" stop="42033"/>
              <exon start="41932" stop="41805"/>
              <exon start="41326" stop="41176"/>
              <exon start="41003" stop="40800"/>
              <exon start="39600" stop="39459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42100" stop="42033"/>
              <exon start="41932" stop="41805"/>
              <exon start="41326" stop="41176"/>
              <exon start="41003" stop="40800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42044" stop="42033"/>
              <exon start="41932" stop="41805"/>
              <exon start="41326" stop="41176"/>
              <exon start="41003" stop="40800"/>
              <exon start="39600" stop="39297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41304" stop="41176"/>
              <exon start="41003" stop="40800"/>
              <exon start="39600" stop="39176"/>
              <exon start="38871" stop="38799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41303" stop="41176"/>
              <exon start="41003" stop="40800"/>
              <exon start="39600" stop="39176"/>
              <exon start="38871" stop="38839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41301" stop="41176"/>
              <exon start="41003" stop="40800"/>
              <exon start="39600" stop="39193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41253" stop="41176"/>
              <exon start="41003" stop="40800"/>
              <exon start="39600" stop="39176"/>
              <exon start="38871" stop="38811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40995" stop="40800"/>
              <exon start="39600" stop="39176"/>
              <exon start="38871" stop="38679"/>
              <exon start="38590" stop="38536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40892" stop="40800"/>
              <exon start="39600" stop="39176"/>
              <exon start="38871" stop="38679"/>
              <exon start="38590" stop="38529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40892" stop="40800"/>
              <exon start="39600" stop="39176"/>
              <exon start="38871" stop="38679"/>
              <exon start="38590" stop="38559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40852" stop="40800"/>
              <exon start="39600" stop="39176"/>
              <exon start="38871" stop="38679"/>
              <exon start="38590" stop="38495"/>
              <exon start="37991" stop="37928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39591" stop="39176"/>
              <exon start="38871" stop="38679"/>
              <exon start="38590" stop="38495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39583" stop="39176"/>
              <exon start="38871" stop="38679"/>
              <exon start="38590" stop="38495"/>
              <exon start="37991" stop="37836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39428" stop="39176"/>
              <exon start="38871" stop="38679"/>
              <exon start="38590" stop="38495"/>
              <exon start="37991" stop="37892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39407" stop="39176"/>
              <exon start="38871" stop="38679"/>
              <exon start="38590" stop="38495"/>
              <exon start="37991" stop="37883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39368" stop="39176"/>
              <exon start="38871" stop="38679"/>
              <exon start="38590" stop="38495"/>
              <exon start="37991" stop="37971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39368" stop="39176"/>
              <exon start="38871" stop="38679"/>
              <exon start="38590" stop="38495"/>
              <exon start="37991" stop="37977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39232" stop="39176"/>
              <exon start="38871" stop="38679"/>
              <exon start="38590" stop="38495"/>
              <exon start="37991" stop="37925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39209" stop="39176"/>
              <exon start="38871" stop="38679"/>
              <exon start="38590" stop="38495"/>
              <exon start="37991" stop="37836"/>
              <exon start="37216" stop="37180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38796" stop="38679"/>
              <exon start="38590" stop="38495"/>
              <exon start="37991" stop="37836"/>
              <exon start="37216" stop="36764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38698" stop="38679"/>
              <exon start="38590" stop="38495"/>
              <exon start="37991" stop="37836"/>
              <exon start="37216" stop="37021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38574" stop="38495"/>
              <exon start="37991" stop="37836"/>
              <exon start="37216" stop="36884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38563" stop="38495"/>
              <exon start="37991" stop="37836"/>
              <exon start="37216" stop="36764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37953" stop="37836"/>
              <exon start="37216" stop="36764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37934" stop="37836"/>
              <exon start="37216" stop="36719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37934" stop="37836"/>
              <exon start="37216" stop="36719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37910" stop="37836"/>
              <exon start="37216" stop="36758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37885" stop="37836"/>
              <exon start="37216" stop="36764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299673" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37865" stop="37836"/>
              <exon start="37216" stop="36728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37216" stop="36764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714366" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAG : GGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGG : TGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG : TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG : AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAG : CGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAATGGAAACCGTTCTGGGTATTTTGACGAGAAATTGGAAGAGTATGTGGAAATTCCAAGTGACAGTGGGATTACATTTAATGTTAAGCCAAAAATGAAGGCACTGGAGATTGCTGAAAGGGCTAGGGAGGCCATCCTTAGCCACAAATTTGATCAG : GTACGTGTGAACTTACCTAACAGTGATATGGTGGGCCATACTGGTGACATCAAAGCAACAATTGAAGCTTGCAAGGCTGCCGATGATGGTGTCAAG : ATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT : GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTATATTTCTGTATCTGTCAGAGAAATAGTATGGTCCAGTTGAAGTT</gDNA_template>
            <first_frame> N  F  *  D  L  R  *  W  V  V  Q  E  M  H  G  N  *  R  T  I  L  S  F  L  R  E  R  L  L  L  L  L  F  W  M  V  G  V  R  L  N  L  M  S  I  T  L  S  L  L  L  K  L  L  L  W  T  H  S  R  R :   V  L  L  N  I  G  D  *  L  R  H  M  E  M  L  W  G  F  P  Q  R  M  I  W  V  T  V  K  L  V  T  M  L  L  G  L  E  G  S  L  L  K   : V  Q  S  L  L  T  *  P  L  P  L  G  K  S  M  M  E  K  V  S  N  T  F  K  N  V  L  R  K  E  L  C  T  L  L  V  S  *  V  M  G  V  S  T  P  G  L  T  N  C  C :   C  Y  *  K  V  L  L  S  V  V  P  K  E  F  V  S  M  P  S  P  M  D  V  M  F  W  M  V  L  V  W  A  S  W  R  P  S  R  M  I  *  Q  N  Y  V  D  K  V  L  M  P  G  L  H  L  V  E  V  A  C  M  L  P  W  I  V  M  R :   M  T  G  M  S  *  K  E  V  G  M  H  K  F  L  V  R  L  H  T  I  S  R  I  P  L  R  Q  L  R  S  *  G  R  N  P  M  P  M  I  N  T  *  P  L  L  L  L  L  M  I  M  E  S  L  L  V  L  F  W  M  V  M  L  S  *  L  S  T  S  E  Q  I  V  W  S  C  L  Q  R  P  L  N  M  R  I  S  I  N  L  I  V  Y  E  S  L  K  S  I  M  L  V  C  S  N  M  T  V  N  *  S  F  Q  A  N  T  L  F  L  L  Q  R  L  T  G  H  L  G  S  I  *  C  A  M  V  F  G  L  L  L  V   : A  R  P  L  N  L  V  M  S  P  S  F  G  M  E  T  V  L  G  I  L  T  R  N  W  K  S  M  W  K  F  Q  V  T  V  G  L  H  L  M  L  S  Q  K  *  R  H  W  R  L  L  K  G  L  G  R  P  S  L  A  T  N  L  I  R :   Y  V  *  T  Y  L  T  V  I  W  W  A  I  L  V  T  S  K  Q  Q  L  K  L  A  R  L  P  M  M  V  S  R :   *  S  L  M  L  L  S  K  W  V  E  F  S  L  L  L  L  T  M  E  M  L  K  I  W  L  R  E  T  R  R  E  S  H  Y  L  T  K  M  E  T  F  R  F  S  L  L  T  L  S  N  L :   F  L  L  Q  L  V  V  L  D  L  Y  L  V  *  D  S  A  Q  I  S  P  P  V  D  L  L  M  L  L  Q  P  L  *  I  C  T  D  T  R  R  L  A  I  T  S  Q  P  *  S  K  L  W  T  T  R  *  S  H  R  P  *  G  *  S  F  G  A  R  R  K  R  *  *  P  F  Y  T  L  F  I  *  I  R  H  F  *  A  Y  I  N  R  G  *  H  S  T  T  W  P  V  M  M  L  *  W  K  S  V  I  Y  Y  C  S  F  *  T  L  L  S  F  K  A  *  L  R  V  F  V  F  W  *  T  R  I  L  N  L  S  L  F  V  A  E  I  Y  *  L  F  D  A  L  Y  F  C  I  C  Q  R  N  S  M  V  Q  L  K   </first_frame>
            <second_frame>  I  F  K  I  *  D  N  G  *  F  R  R  C  M  E  I  E  G  P  S  *  A  S  *  G  K  D  C  C  C  Y  C  F  G  W  L  G  *  G  *  T  *  *  V  *  R  Y  L  C  C  *  N  S  C  Y  G  L  T  Q  E   : G  C  S  *  T  L  E  I  D  *  G  T  W  K  C  C  G  A  S  H  R  G  *  Y  G  *  Q  *  S  W  S  Q  C  S  W  G  W  K  D  L  C  S  R  :  C  K  A  C  *  P  S  P  C  L  W  E  N  L  *  W  R  R  F  Q  I  R  S  R  M  F  *  E  R  N  S  A  P  Y  W  S  R  E  *  W  G  C  P  L  Q  A  *  P  T  A   : V  A  T  E  R  C  C  *  A  W  C  Q  K  N  S  C  P  C  P  H  R  W  T  *  C  S  G  W  F  *  C  G  L  H  G  D  P  R  E  *  S  S  K  I  T  W  T  R  C  *  C  P  G  C  I  W  W  R  S  H  V  C  Y  H  G  S  L  *   : E  *  L  G  C  R  K  K  R  L  G  C  T  S  S  W  *  G  S  T  P  F  Q  G  S  R  *  G  N  *  E  V  E  A  G  T  Q  C  Q  *  S  I  L  S  P  F  C  C  C  *  *  *  W  K  A  C  W  S  Y  F  G  W  *  C  C  R  D  F  Q  L  Q  S  R  S  Y  G  H  A  C  K  G  P  *  I  *  E  F  R  *  I  *  S  C  T  S  P  *  N  P  L  C  W  Y  A  P  I  *  R  *  I  E  A  S  K  Q  I  P  C  F  S  S  R  D  *  Q  D  I  W  G  V  S  S  A  Q  W  Y  S  D  F  C  L  *  :  R  D  R  *  I  W  S  C  H  L  L  L  E  W  K  P  F  W  V  F  *  R  E  I  G  R  V  C  G  N  S  K  *  Q  W  D  Y  I  *  C  *  A  K  N  E  G  T  G  D  C  *  K  G  *  G  G  H  P  *  P  Q  I  *  S   : G  T  C  E  L  T  *  Q  *  Y  G  G  P  Y  W  *  H  Q  S  N  N  *  S  L  Q  G  C  R  *  W  C  Q   : D  D  P  *  C  Y  *  A  S  G  W  N  F  P  C  Y  C  *  P  W  K  C  *  R  Y  G  *  E  K  Q  E  G  R  A  I  T  *  Q  K  W  K  H  S  D  S  H  F  S  H  S  R  T   : C  S  Y  C  N  W  W  S  W  T  C  T  W  C  E  I  P  H  R  S  P  H  R  W  T  C  *  C  C  F  N  L  Y  E  S  A  R  I  R  G  A  *  R  L  R  A  N  L  D  R  S  C  G  Q  L  D  N  L  I  D  L  R  V  E  V  L  A  Q  E  E  S  D  N  D  H  S  T  L  C  L  F  E  *  D  I  F  E  L  I  S  T  E  V  D  I  L  P  R  G  L  *  *  C  Y  D  G  R  V  *  Y  T  T  V  H  F  K  P  C  C  L  S  R  H  N  F  E  F  L  F  F  G  E  Q  E  F  L  I  F  H  Y  L  W  Q  K  Y  I  S  C  L  M  L  Y  I  S  V  S  V  R  E  I  V  W  S  S  *  S  </second_frame>
            <third_frame>   F  L  R  S  E  I  M  G  S  S  G  D  A  W  K  L  K  D  H  P  K  L  P  K  G  K  T  V  A  V  I  V  L  D  G  W  G  E  A  K  P  N  E  Y  N  A  I  S  V  A  E  T  P  V  M  D  S  L  K  K  :  G  A  P  E  H  W  R  L  I  K  A  H  G  N  A  V  G  L  P  T  E  D  D  M  G  N  S  E  V  G  H  N  A  L  G  A  G  R  I  F  A  Q  G :   A  K  L  V  D  L  A  L  A  S  G  K  I  Y  D  G  E  G  F  K  Y  V  Q  E  C  F  E  K  G  T  L  H  L  I  G  L  V  S  D  G  G  V  H  S  R  L  D  Q  L  L  :  L  L  L  K  G  A  A  E  R  G  A  K  R  I  R  V  H  A  L  T  D  G  R  D  V  L  D  G  S  S  V  G  F  M  E  T  L  E  N  D  L  A  K  L  R  G  Q  G  V  D  A  R  V  A  S  G  G  G  R  M  Y  V  T  M  D  R  Y  E  :  N  D  W  D  V  V  K  R  G  W  D  A  Q  V  L  G  E  A  P  H  H  F  K  D  P  V  E  A  I  K  K  L  R  Q  E  P  N  A  N  D  Q  Y  L  A  P  F  V  V  V  D  D  N  G  K  P  V  G  P  I  L  D  G  D  A  V  V  T  F  N  F  R  A  D  R  M  V  M  L  A  K  A  L  E  Y  E  N  F  D  K  F  D  R  V  R  V  P  K  I  H  Y  A  G  M  L  Q  Y  D  G  E  L  K  L  P  S  K  Y  L  V  S  P  P  E  I  D  R  T  S  G  E  Y  L  V  R  N  G  I  R  T  F  A  C  S :   E  T  V  K  F  G  H  V  T  F  F  W  N  G  N  R  S  G  Y  F  D  E  K  L  E  E  Y  V  E  I  P  S  D  S  G  I  T  F  N  V  K  P  K  M  K  A  L  E  I  A  E  R  A  R  E  A  I  L  S  H  K  F  D  Q  :  V  R  V  N  L  P  N  S  D  M  V  G  H  T  G  D  I  K  A  T  I  E  A  C  K  A  A  D  D  G  V  K  :  M  I  L  D  A  I  E  Q  V  G  G  I  F  L  V  T  A  D  H  G  N  A  E  D  M  V  K  R  N  K  K  G  E  P  L  L  D  K  N  G  N  I  Q  I  L  T  S  H  T  L  E  P  :  V  P  I  A  I  G  G  P  G  L  V  P  G  V  R  F  R  T  D  L  P  T  G  G  L  A  N  V  A  S  T  F  M  N  L  H  G  Y  E  A  P  S  D  Y  E  P  T  L  I  E  V  V  D  N  *  I  I  S  *  T  L  G  L  K  F  W  R  K  K  K  A  I  M  T  I  L  H  F  V  Y  L  N  K  T  F  L  S  L  Y  Q  Q  R  L  T  F  Y  H  V  A  C  N  D  A  M  M  E  E  C  D  I  L  L  F  I  L  N  P  V  V  F  Q  G  I  T  S  S  F  C  F  L  V  N  K  N  S  *  S  F  T  I  C  G  R  N  I  L  V  V  *  C  S  I  F  L  Y  L  S  E  K  *  Y  G  P  V  E  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42212" stop="42033"/>
                    <exon start="41932" stop="41805"/>
                    <exon start="41326" stop="41176"/>
                    <exon start="41003" stop="40800"/>
                    <exon start="39600" stop="39176"/>
                    <exon start="38871" stop="38679"/>
                    <exon start="38590" stop="38495"/>
                    <exon start="37991" stop="37836"/>
                    <exon start="37216" stop="37052"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1695</number_coding_nucleotides>
                  <number_encoded_amino_acids>565</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLRSEIMGSSGDAWKLKDHPKLPKGKTVAVIVLDGWGEAKPNEYNAISVAETPVMDSLKKGAPEHWRLIKAHGNAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYDGEGFKYVQECFEKGTLHLIGLVSDGGVHSRLDQLLLLLKGAAERGAKRIRVHALTDGRDVLDGSSVGFMETLENDLAKLRGQGVDARVASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHHFKDPVEAIKKLRQEPNANDQYLAPFVVVDDNGKPVGPILDGDAVVTFNFRADRMVMLAKALEYENFDKFDRVRVPKIHYAGMLQYDGELKLPSKYLVSPPEIDRTSGEYLVRNGIRTFACSETVKFGHVTFFWNGNRSGYFDEKLEEYVEIPSDSGITFNVKPKMKALEIAERAREAILSHKFDQVRVNLPNSDMVGHTGDIKATIEACKAADDGVKMILDAIEQVGGIFLVTADHGNAEDMVKRNKKGEPLLDKNGNIQILTSHTLEPVPIAIGGPGLVPGVRFRTDLPTGGLANVASTFMNLHGYEAPSDYEPTLIEVVDN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37039" stop="36809"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLGLKFWRKKKAIMTILHFVYLNKTFLSLYQQRLTFYHVACNDAMMEECDILLFILNPVVFQGITSSFCFLVNKNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="42214" e_stop="42033"/>
            <exon e_start="41932" e_stop="41805"/>
            <exon e_start="41326" e_stop="41176"/>
            <exon e_start="41003" e_stop="40800"/>
            <exon e_start="39600" e_stop="38832"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42214" e_stop="42033" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="42032" i_stop="41933" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41932" e_stop="41805" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41804" i_stop="41327" i_length="478"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41326" e_stop="41176" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41175" i_stop="41004" i_length="172"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41003" e_stop="40800" e_length="204"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="40799" i_stop="39601" i_length="1199"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39600" e_stop="38832" e_length="769"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42214" stop="42033"/>
              <exon start="41932" stop="41805"/>
              <exon start="41326" stop="41176"/>
              <exon start="41003" stop="40800"/>
              <exon start="39600" stop="39450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42214" stop="42033"/>
              <exon start="41932" stop="41805"/>
              <exon start="41326" stop="41176"/>
              <exon start="41003" stop="40800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42214" stop="42033"/>
              <exon start="41932" stop="41805"/>
              <exon start="41326" stop="41176"/>
              <exon start="41003" stop="40832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42214" stop="42033"/>
              <exon start="41932" stop="41805"/>
              <exon start="41326" stop="41176"/>
              <exon start="41003" stop="40838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42214" stop="42033"/>
              <exon start="41932" stop="41805"/>
              <exon start="41326" stop="41176"/>
              <exon start="41003" stop="40882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42156" stop="42033"/>
              <exon start="41932" stop="41805"/>
              <exon start="41326" stop="41176"/>
              <exon start="41003" stop="40800"/>
              <exon start="39600" stop="39459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42100" stop="42033"/>
              <exon start="41932" stop="41805"/>
              <exon start="41326" stop="41176"/>
              <exon start="41003" stop="40800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42044" stop="42033"/>
              <exon start="41932" stop="41805"/>
              <exon start="41326" stop="41176"/>
              <exon start="41003" stop="40800"/>
              <exon start="39600" stop="39297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41301" stop="41176"/>
              <exon start="41003" stop="40800"/>
              <exon start="39600" stop="39193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39276" stop="38832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245140" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTTAAGATCTGAGATAATGGGTAGTTCAGGAGATGCATGGAAATTGAAGGACCATCCTAAGCTTCCTAAGGGAAAGACTGTTGCTGTTATTGTTTTGGATGGTTGGGGTGAGGCTAAACCTAATGAGTATAACGCTATCTCTGTTGCTGAAACTCCTGTTATGGACTCACTCAAGAAG : GGTGCTCCTGAACATTGGAGATTGATTAAGGCACATGGAAATGCTGTGGGGCTTCCCACAGAGGATGATATGGGTAACAGTGAAGTTGGTCACAATGCTCTTGGGGCTGGAAGGATCTTTGCTCAAGG : TGCAAAGCTTGTTGACCTAGCCCTTGCCTCTGGGAAAATCTATGATGGAGAAGGTTTCAAATACGTTCAAGAATGTTTTGAGAAAGGAACTCTGCACCTTATTGGTCTCGTGAGTGATGGGGGTGTCCACTCCAGGCTTGACCAACTGCTG : TTGCTACTGAAAGGTGCTGCTGAGCGTGGTGCCAAAAGAATTCGTGTCCATGCCCTCACCGATGGACGTGATGTTCTGGATGGTTCTAGTGTGGGCTTCATGGAGACCCTCGAGAATGATCTAGCAAAATTACGTGGACAAGGTGTTGATGCCCGGGTTGCATCTGGTGGAGGTCGCATGTATGTTACCATGGATCGTTATGAG : AATGACTGGGATGTCGTAAAAAGAGGTTGGGATGCACAAGTTCTTGGTGAGGCTCCACACCATTTCAAGGATCCCGTTGAGGCAATTAAGAAGTTGAGGCAGGAACCCAATGCCAATGATCAATACTTAGCCCCTTTTGTTGTTGTTGATGATAATGGAAAGCCTGTTGGTCCTATTTTGGATGGTGATGCTGTCGTGACTTTCAACTTCAGAGCAGATCGTATGGTCATGCTTGCAAAGGCCCTTGAATATGAGAATTTCGATAAATTTGATCGTGTACGAGTCCCTAAAATCCATTATGCTGGTATGCTCCAATATGACGGTGAATTGAAGCTTCCAAGCAAATACCTTGTTTCTCCTCCAGAGATTGACAGGACATCTGGGGAGTATCTAGTGCGCAATGGTATTCGGACTTTTGCTTGTAGGTGCGTTGCTGTGGCATATCTTCTGGTGCCTTTGTTTAGTATTTTTGCCGAATAAATTGCTAATTTGCTCAAAATGTCTGATTATTATAGAGTCTTCTGCTATATTTGTTAACATTGTAAAGCCTGGAAGTCAATTGGCCTCTTGTATTTTAAGAAATAAAATAAAATGGTGAATTAAGAGGTTAGTTGGAAGTAAATATGCCATTCTAAATGATAAAATATTCTGCAAGAAGAAACATCTAATATATAAGAGTTTGAATTTTCTTTGAACTAGTATTAACAACTCCGGTTCTTGTTTCAACAGCGAGACCGTTAAATTTGGTCATGTCACCTTCTTTTGGAAT</gDNA_template>
            <first_frame> N  F  *  D  L  R  *  W  V  V  Q  E  M  H  G  N  *  R  T  I  L  S  F  L  R  E  R  L  L  L  L  L  F  W  M  V  G  V  R  L  N  L  M  S  I  T  L  S  L  L  L  K  L  L  L  W  T  H  S  R  R :   V  L  L  N  I  G  D  *  L  R  H  M  E  M  L  W  G  F  P  Q  R  M  I  W  V  T  V  K  L  V  T  M  L  L  G  L  E  G  S  L  L  K   : V  Q  S  L  L  T  *  P  L  P  L  G  K  S  M  M  E  K  V  S  N  T  F  K  N  V  L  R  K  E  L  C  T  L  L  V  S  *  V  M  G  V  S  T  P  G  L  T  N  C  C :   C  Y  *  K  V  L  L  S  V  V  P  K  E  F  V  S  M  P  S  P  M  D  V  M  F  W  M  V  L  V  W  A  S  W  R  P  S  R  M  I  *  Q  N  Y  V  D  K  V  L  M  P  G  L  H  L  V  E  V  A  C  M  L  P  W  I  V  M  R :   M  T  G  M  S  *  K  E  V  G  M  H  K  F  L  V  R  L  H  T  I  S  R  I  P  L  R  Q  L  R  S  *  G  R  N  P  M  P  M  I  N  T  *  P  L  L  L  L  L  M  I  M  E  S  L  L  V  L  F  W  M  V  M  L  S  *  L  S  T  S  E  Q  I  V  W  S  C  L  Q  R  P  L  N  M  R  I  S  I  N  L  I  V  Y  E  S  L  K  S  I  M  L  V  C  S  N  M  T  V  N  *  S  F  Q  A  N  T  L  F  L  L  Q  R  L  T  G  H  L  G  S  I  *  C  A  M  V  F  G  L  L  L  V  G  A  L  L  W  H  I  F  W  C  L  C  L  V  F  L  P  N  K  L  L  I  C  S  K  C  L  I  I  I  E  S  S  A  I  F  V  N  I  V  K  P  G  S  Q  L  A  S  C  I  L  R  N  K  I  K  W  *  I  K  R  L  V  G  S  K  Y  A  I  L  N  D  K  I  F  C  K  K  K  H  L  I  Y  K  S  L  N  F  L  *  T  S  I  N  N  S  G  S  C  F  N  S  E  T  V  K  F  G  H  V  T  F  F  W  N </first_frame>
            <second_frame>  I  F  K  I  *  D  N  G  *  F  R  R  C  M  E  I  E  G  P  S  *  A  S  *  G  K  D  C  C  C  Y  C  F  G  W  L  G  *  G  *  T  *  *  V  *  R  Y  L  C  C  *  N  S  C  Y  G  L  T  Q  E   : G  C  S  *  T  L  E  I  D  *  G  T  W  K  C  C  G  A  S  H  R  G  *  Y  G  *  Q  *  S  W  S  Q  C  S  W  G  W  K  D  L  C  S  R  :  C  K  A  C  *  P  S  P  C  L  W  E  N  L  *  W  R  R  F  Q  I  R  S  R  M  F  *  E  R  N  S  A  P  Y  W  S  R  E  *  W  G  C  P  L  Q  A  *  P  T  A   : V  A  T  E  R  C  C  *  A  W  C  Q  K  N  S  C  P  C  P  H  R  W  T  *  C  S  G  W  F  *  C  G  L  H  G  D  P  R  E  *  S  S  K  I  T  W  T  R  C  *  C  P  G  C  I  W  W  R  S  H  V  C  Y  H  G  S  L  *   : E  *  L  G  C  R  K  K  R  L  G  C  T  S  S  W  *  G  S  T  P  F  Q  G  S  R  *  G  N  *  E  V  E  A  G  T  Q  C  Q  *  S  I  L  S  P  F  C  C  C  *  *  *  W  K  A  C  W  S  Y  F  G  W  *  C  C  R  D  F  Q  L  Q  S  R  S  Y  G  H  A  C  K  G  P  *  I  *  E  F  R  *  I  *  S  C  T  S  P  *  N  P  L  C  W  Y  A  P  I  *  R  *  I  E  A  S  K  Q  I  P  C  F  S  S  R  D  *  Q  D  I  W  G  V  S  S  A  Q  W  Y  S  D  F  C  L  *  V  R  C  C  G  I  S  S  G  A  F  V  *  Y  F  C  R  I  N  C  *  F  A  Q  N  V  *  L  L  *  S  L  L  L  Y  L  L  T  L  *  S  L  E  V  N  W  P  L  V  F  *  E  I  K  *  N  G  E  L  R  G  *  L  E  V  N  M  P  F  *  M  I  K  Y  S  A  R  R  N  I  *  Y  I  R  V  *  I  F  F  E  L  V  L  T  T  P  V  L  V  S  T  A  R  P  L  N  L  V  M  S  P  S  F  G   </second_frame>
            <third_frame>   F  L  R  S  E  I  M  G  S  S  G  D  A  W  K  L  K  D  H  P  K  L  P  K  G  K  T  V  A  V  I  V  L  D  G  W  G  E  A  K  P  N  E  Y  N  A  I  S  V  A  E  T  P  V  M  D  S  L  K  K  :  G  A  P  E  H  W  R  L  I  K  A  H  G  N  A  V  G  L  P  T  E  D  D  M  G  N  S  E  V  G  H  N  A  L  G  A  G  R  I  F  A  Q  G :   A  K  L  V  D  L  A  L  A  S  G  K  I  Y  D  G  E  G  F  K  Y  V  Q  E  C  F  E  K  G  T  L  H  L  I  G  L  V  S  D  G  G  V  H  S  R  L  D  Q  L  L  :  L  L  L  K  G  A  A  E  R  G  A  K  R  I  R  V  H  A  L  T  D  G  R  D  V  L  D  G  S  S  V  G  F  M  E  T  L  E  N  D  L  A  K  L  R  G  Q  G  V  D  A  R  V  A  S  G  G  G  R  M  Y  V  T  M  D  R  Y  E  :  N  D  W  D  V  V  K  R  G  W  D  A  Q  V  L  G  E  A  P  H  H  F  K  D  P  V  E  A  I  K  K  L  R  Q  E  P  N  A  N  D  Q  Y  L  A  P  F  V  V  V  D  D  N  G  K  P  V  G  P  I  L  D  G  D  A  V  V  T  F  N  F  R  A  D  R  M  V  M  L  A  K  A  L  E  Y  E  N  F  D  K  F  D  R  V  R  V  P  K  I  H  Y  A  G  M  L  Q  Y  D  G  E  L  K  L  P  S  K  Y  L  V  S  P  P  E  I  D  R  T  S  G  E  Y  L  V  R  N  G  I  R  T  F  A  C  R  C  V  A  V  A  Y  L  L  V  P  L  F  S  I  F  A  E  *  I  A  N  L  L  K  M  S  D  Y  Y  R  V  F  C  Y  I  C  *  H  C  K  A  W  K  S  I  G  L  L  Y  F  K  K  *  N  K  M  V  N  *  E  V  S  W  K  *  I  C  H  S  K  *  *  N  I  L  Q  E  E  T  S  N  I  *  E  F  E  F  S  L  N  *  Y  *  Q  L  R  F  L  F  Q  Q  R  D  R  *  I  W  S  C  H  L  L  L  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42212" stop="42033"/>
                    <exon start="41932" stop="41805"/>
                    <exon start="41326" stop="41176"/>
                    <exon start="41003" stop="40800"/>
                    <exon start="39600" stop="39121"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1140</number_coding_nucleotides>
                  <number_encoded_amino_acids>380</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLRSEIMGSSGDAWKLKDHPKLPKGKTVAVIVLDGWGEAKPNEYNAISVAETPVMDSLKKGAPEHWRLIKAHGNAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYDGEGFKYVQECFEKGTLHLIGLVSDGGVHSRLDQLLLLLKGAAERGAKRIRVHALTDGRDVLDGSSVGFMETLENDLAKLRGQGVDARVASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHHFKDPVEAIKKLRQEPNANDQYLAPFVVVDDNGKPVGPILDGDAVVTFNFRADRMVMLAKALEYENFDKFDRVRVPKIHYAGMLQYDGELKLPSKYLVSPPEIDRTSGEYLVRNGIRTFACRCVAVAYLLVPLFSIFAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="37996" e_stop="37836"/>
            <exon e_start="37216" e_stop="36719"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="37996" e_stop="37836" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37835" i_stop="37217" i_length="619"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37216" e_stop="36719" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37996" stop="37836"/>
              <exon start="37216" stop="36756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37953" stop="37836"/>
              <exon start="37216" stop="36764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37934" stop="37836"/>
              <exon start="37216" stop="36719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37934" stop="37836"/>
              <exon start="37216" stop="36719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37910" stop="37836"/>
              <exon start="37216" stop="36758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37885" stop="37836"/>
              <exon start="37216" stop="36764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299673" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37865" stop="37836"/>
              <exon start="37216" stop="36728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37216" stop="36764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714366" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCAGATGATCCTTGATGCTATTGAGCAAGTGGGTGGAATTTTCCTTGTTACTGCTGACCATGGAAATGCTGAAGATATGGTTAAGAGAAACAAGAAGGGAGAGCCATTACTTGACAAAAATGGAAACATTCAGATTCTCACTTCTCACACTCTCGAACCT : GTTCCTATTGCAATTGGTGGTCCTGGACTTGTACCTGGTGTGAGATTCCGCACAGATCTCCCCACCGGTGGACTTGCTAATGTTGCTTCAACCTTTATGAATCTGCACGGATACGAGGCGCCTAGCGATTACGAGCCAACCTTGATCGAAGTTGTGGACAACTAGATAATCTCATAGACCTTAGGGTTGAAGTTTTGGCGCAAGAAGAAAGCGATAATGACCATTCTACACTTTGTTTATTTGAATAAGACATTTTTGAGCTTATATCAACAGAGGTTGACATTCTACCACGTGGCCTGTAATGATGCTATGATGGAAGAGTGTGATATACTACTGTTCATTTTAAACCCTGTTGTCTTTCAAGGCATAACTTCGAGTTTTTGTTTTTTGGTGAACAAGAATTCTTAATCTTTCACTATTTGTGGCAGAAATATATTAGTTGTTTGATGCTCTATATTTCTGTATCTGTCAGAGAAATAGTATGGTCCAGTTGAAGTT</gDNA_template>
            <first_frame> C  R  *  S  L  M  L  L  S  K  W  V  E  F  S  L  L  L  L  T  M  E  M  L  K  I  W  L  R  E  T  R  R  E  S  H  Y  L  T  K  M  E  T  F  R  F  S  L  L  T  L  S  N  L :   F  L  L  Q  L  V  V  L  D  L  Y  L  V  *  D  S  A  Q  I  S  P  P  V  D  L  L  M  L  L  Q  P  L  *  I  C  T  D  T  R  R  L  A  I  T  S  Q  P  *  S  K  L  W  T  T  R  *  S  H  R  P  *  G  *  S  F  G  A  R  R  K  R  *  *  P  F  Y  T  L  F  I  *  I  R  H  F  *  A  Y  I  N  R  G  *  H  S  T  T  W  P  V  M  M  L  *  W  K  S  V  I  Y  Y  C  S  F  *  T  L  L  S  F  K  A  *  L  R  V  F  V  F  W  *  T  R  I  L  N  L  S  L  F  V  A  E  I  Y  *  L  F  D  A  L  Y  F  C  I  C  Q  R  N  S  M  V  Q  L  K   </first_frame>
            <second_frame>  A  D  D  P  *  C  Y  *  A  S  G  W  N  F  P  C  Y  C  *  P  W  K  C  *  R  Y  G  *  E  K  Q  E  G  R  A  I  T  *  Q  K  W  K  H  S  D  S  H  F  S  H  S  R  T   : C  S  Y  C  N  W  W  S  W  T  C  T  W  C  E  I  P  H  R  S  P  H  R  W  T  C  *  C  C  F  N  L  Y  E  S  A  R  I  R  G  A  *  R  L  R  A  N  L  D  R  S  C  G  Q  L  D  N  L  I  D  L  R  V  E  V  L  A  Q  E  E  S  D  N  D  H  S  T  L  C  L  F  E  *  D  I  F  E  L  I  S  T  E  V  D  I  L  P  R  G  L  *  *  C  Y  D  G  R  V  *  Y  T  T  V  H  F  K  P  C  C  L  S  R  H  N  F  E  F  L  F  F  G  E  Q  E  F  L  I  F  H  Y  L  W  Q  K  Y  I  S  C  L  M  L  Y  I  S  V  S  V  R  E  I  V  W  S  S  *  S  </second_frame>
            <third_frame>   Q  M  I  L  D  A  I  E  Q  V  G  G  I  F  L  V  T  A  D  H  G  N  A  E  D  M  V  K  R  N  K  K  G  E  P  L  L  D  K  N  G  N  I  Q  I  L  T  S  H  T  L  E  P  :  V  P  I  A  I  G  G  P  G  L  V  P  G  V  R  F  R  T  D  L  P  T  G  G  L  A  N  V  A  S  T  F  M  N  L  H  G  Y  E  A  P  S  D  Y  E  P  T  L  I  E  V  V  D  N  *  I  I  S  *  T  L  G  L  K  F  W  R  K  K  K  A  I  M  T  I  L  H  F  V  Y  L  N  K  T  F  L  S  L  Y  Q  Q  R  L  T  F  Y  H  V  A  C  N  D  A  M  M  E  E  C  D  I  L  L  F  I  L  N  P  V  V  F  Q  G  I  T  S  S  F  C  F  L  V  N  K  N  S  *  S  F  T  I  C  G  R  N  I  L  V  V  *  C  S  I  F  L  Y  L  S  E  K  *  Y  G  P  V  E  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37994" stop="37836"/>
                    <exon start="37216" stop="37052"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMILDAIEQVGGIFLVTADHGNAEDMVKRNKKGEPLLDKNGNIQILTSHTLEPVPIAIGGPGLVPGVRFRTDLPTGGLANVASTFMNLHGYEAPSDYEPTLIEVVDN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0044H04.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37039" stop="36809"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLGLKFWRKKKAIMTILHFVYLNKTFLSLYQQRLTFYHVACNDAMMEECDILLFILNPVVFQGITSSFCFLVNKNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 147 chains have been computed
$ 
$ memory statistics:
$ 111784 bytes spliced alignments in total
$ 55 spliced alignments have been stored
$ 2032 bytes was the average size of a spliced alignment
$ 14000 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 2000 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 176 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-07 03:40:37
-->
