<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 08:33:18"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0046G04-4ze7b/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-2q6wGS/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2q6wGS/sgn_marker_seqs" ref_id="SGN-M1883" ref_strand="+" ref_description="SGN-M1883 T1270 [cos_markers]">
      <seq>tttttgctatactcagatcagggaccttctcggtttgtatttcattgaaatatgggtgttgaggtggaagctaagttagttcatgttccagttgaagctggaactgaacagatcaatcttctgaaagaaaatggaaagccgaatcatgtttcagggattactgagccaataaaattcggctctcatgggactgaagaacctaagaaggaggaaataagtagaattcctgtgagcaatgttccaaaggatgcggttgaggattggcctgaacctaagcaggtccattcgttctatactgttaaatttcggagatttgacgaccctaaactgaaggccagaattgaactggctgaaaaagagctacagaaaaagaaccaagctagatctcagatcattgaaaaattgaaggccaaaagggctgaaaaatcaattttcattgaacaaaggaaagccctcagtgctgagaataaggaatttcggagtgctattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0046G04-4ze7b/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0046G04.1" temp_strand="+" temp_description="C07HBa0046G04.1  AC210353.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0046G04 upload_account_name:france">
        <position start="28007" stop="29427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28320" g_stop="28717" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="417" r_length="402" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28718" i_stop="29052" i_length="335">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29053" g_stop="29127" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="492" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0046G04.1" gen_strand="+" ref_id="SGN-M1883" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0046G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28320" e_stop="28717"/>
          <exon e_start="29053" e_stop="29127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAGGGA-CTTCTCGGTTTGTATTTCATTGAAATATGGGTGTAGAGGTGGAAGCTAAGTTAGTTCATGTTCCAGTTGAAGCTGGAACTGAACAGATCAATCTTCTGAAAGAAAATGGAAAGCCGAATCATGTTTCAGGGATTACGGAGCCAATAAAATTCGGCTCTCATGGGACTGAAGAACCT---AAGGAGGAAATAAGTAGAATTCCTGTGAGCAATGTTCCAAAGGATGCGGTTGAGGATTGGCCTGAACCTAAGCAGGTCCATTCGTTCTATACTGTTAAATTTCGGAGATTTGACGACCCTAAACTGAAAGCCAGAATTGAACTGGCTGAAAAAGAGCTACAGAAAAAGAACCAAGCTAGATCTCAGATCATTGAAAAATTGAAGGCCAAAAGGGTAAGTTTTTTGGTGAATCTTTCTTTGGCTGTATTTTTCAAGAGCATATTATTTGGTATCTCTCTAGTATTGTTAAAATCATGGAGTTGTTTATGACATGATCCTAAAATCAGATTTTTACCATGTGTTGCTGCGTTGAACTGGAAGTATTATAAAGTCAAAATGAAAGATCTTGTTATCCTACAGTTTTAACTAATTTCTGCAAATTCAGCAAGCTTTCGTAAGTTGATATTGCCAATTGCATGGCCCATTTTGTTAGTTGCCAATTCTTTTTCCAATTTATGGCCTTGTGGGAGTATGGCGGCTATAATTTAATGGTCTTTGTGTATTTTCAGGCTGAAAAATCAATTTTCATTGAACAAAGGAAAGCCCTCAGTGCTGAGAATAAGGAATTTCGGAGTGCTATTGAT</genome_strand>
        <mrna_strand>GATCAGGGACCTTCTCGGTTTGTATTTCATTGAAATATGGGTGTTGAGGTGGAAGCTAAGTTAGTTCATGTTCCAGTTGAAGCTGGAACTGAACAGATCAATCTTCTGAAAGAAAATGGAAAGCCGAATCATGTTTCAGGGATTACTGAGCCAATAAAATTCGGCTCTCATGGGACTGAAGAACCTAAGAAGGAGGAAATAAGTAGAATTCCTGTGAGCAATGTTCCAAAGGATGCGGTTGAGGATTGGCCTGAACCTAAGCAGGTCCATTCGTTCTATACTGTTAAATTTCGGAGATTTGACGACCCTAAACTGAAGGCCAGAATTGAACTGGCTGAAAAAGAGCTACAGAAAAAGAACCAAGCTAGATCTCAGATCATTGAAAAATTGAAGGCCAAAAGG...............................................................................................................................................................................................................................................................................................................................................GCTGAAAAATCAATTTTCATTGAACAAAGGAAAGCCCTCAGTGCTGAGAATAAGGAATTTCGGAGTGCTATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2q6wGS/sgn_marker_seqs" ref_id="SGN-M4674-2" ref_strand="+" ref_description="SGN-M4674-2 C2_At3g15290-2 [cosii_markers]">
      <seq>ttaggtagcttttttagtgataatctgaataaattttttaggcatggccgatataacaaggatcggagttgttggcgccggccaaatgggtgccggaatcgcccaactcgccgccgtcaacggcgtcgacgtttggctttacgatttggattctgaagctcttactaaagctcaaaaatctatttccaataatattcaacgcctcctcaccaaaggacaaatctctcaggcaacgagtgttgatgctgtgaagcgtcttcgttgttcttcgcgcttggatgatttacagtcagttgatattgttgttgaggctattgtggagtctgaacaagtgaagaaatctttatttgctaacttggataagattgtaaagagttctgctattttggcttctaatacaagctctatttccattactcgtctagcatctgcaacgagccgaccctctcaggtgatcggcatgcactttatgaatcctccgccgattatgaagctggttgaaattattcggggtgcagatacatcagaagacacatattgtgccactaaatgcctggcagagaggtttggtaagacagttatctgctctcaggattactctggtttcatagtaaaccgaattttgatgccaatgataaacgaagcctttcatacactgtacaccggagttgcaacaaaagaagatatcgatacaggaatgaaactaggaaccaaccatcctatgggtccttttgaacttgcagattttatcggactggatgtttgtttgtcaatcatgaaagtttttcaagccggtttaggggacgataaatatgccccatgccctctccttgtgcagtatgttgatgctggtagacttggtaaaaaacgaggggttggggtatatgattaccgtaatgctggtaaaaaaacaggaggatcgcctcgactttgaactccttgcccttggatttgatgaaacaaattacaacttgttgaaatactttccttgtacaattcaataaaaaaaaaaaaaattcccggggtaattgttttcattttattgcatagcttttgttgtgtccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0046G04-4ze7b/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0046G04.1" temp_strand="-" temp_description="C07HBa0046G04.1  AC210353.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0046G04 upload_account_name:france">
        <position start="82093" stop="18127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81793" g_stop="81565" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81564" i_stop="81269" i_length="296">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81268" g_stop="81047" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="451" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81046" i_stop="80036" i_length="1011">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80035" g_stop="79923" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="564" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79922" i_stop="79453" i_length="470">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79452" g_stop="78952" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="1065" r_length="501" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78951" i_stop="78755" i_length="197">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78754" g_stop="78738" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1066" r_stop="1082" r_length="17" r_score="0.647"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78737" i_stop="78484" i_length="254">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78483" g_stop="78470" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1083" r_stop="1096" r_length="14" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0046G04.1" gen_strand="-" ref_id="SGN-M4674-2" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>1096</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0046G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M4674-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81793" e_stop="81565"/>
          <exon e_start="81268" e_stop="81047"/>
          <exon e_start="80035" e_stop="79923"/>
          <exon e_start="79452" e_stop="78952"/>
          <exon e_start="78754" e_stop="78738"/>
          <exon e_start="78483" e_stop="78470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTAGCTTTTTTAGTGATAATCTGAATAAATTTTTTAGGCATGGCCGATATAACAAGGATCGGAGTTGTTGGCGCCGGCCAAATGGGTGCCGGAATCGCCCAACTCGCCGCCGTCAACGGCGTCGACGTTTGGCTTTACGATTTGGATTCTGAAGCTCTTACTAAAGCTCAAAAATCTATTTCCAATAATATTCAACGCCTCCTCACCAAAGGACAAATCTCTCAGGTATTATTACTCCTTTCGTTTGAGCTGAAAGCTTTTGTAAATTGCTTGCTTTGAATTTTACGTTTTTTAATAAGATTTTGCTTGCTTTGAATTTTACGTTTTGGAGTTCTGGAATATAAAGTCAGAATTGATTCATCACAAATGTTTGAAAAATTCTTGTGAAAAAAGCTGGTTTGATTCTCAAAGTTGTACTACTTACTCTATGAAGGTGTTGTTTAGGGTTAATTTGGGAGTTATTTATAAGAAATGTGAACTGTGTTGAGTTCATGTGTTTGATGATCTCATTGATGAAACAGGCAACGAGTGTTGATGCTGTGAAGCGTCTTCGTTGTTCTTCGCGCTTGGATGATTTACAGTCAGTTGATATTGTTGTTGAGGCTATTGTGGAGTCTGAACAAGTGAAGAAATCTTTATTTGCTAACTTGGATAAGATTGTAAAGAGTTCTGCTATTTTGGCTTCTAATACAAGCTCTATTTCCATTACTCGTCTAGCATCTGCAACGAGCCGACCCTCTCAGGTTTGCTTTTCTTGGCTGTTGATTGATTGTAGACTGAAAGATGTTATATGGAACTTATTGAAAACAGAATAACTTTGTTCGTATGCAAATATGTGTGTTGAAGTTCAGGAAAATGCCAACATTCAAACAATTGCATAACTTTCTTGCTCACTTCCTTTTTTGAATCATTCAGAAGGAAGATGTGTGAAATTCATCTATATCATGTTGTCTGTCCTTTCAGACTTGTGGAATCTCAATGCCTAGGCACTCTTGCCCGAGCTGGTAGAATTTCTTGTGGTTGTATTATGGTTGCACTAGTGTGTATGTCCCATCTTTAGTAGTCATCATCACCTGTAAAAACACACATTGATTAACTTTATGATGAGATTGTCTGTATTTCTCAGGAACAACATATAGAATATTATAGTATTGGTAAGGTGAGGGAATTATCTTTCGTCGGGTCAATGAAGTGGTTGGTAAGATTGAAGGTGTAAGGCATCTCACTGCTAATCAGAAGACAAGGGACTAAAAGAACTTCTAAATGGCTGCTAAAAAGCAATACTGGAATGTCGTTGTTATGAATAACTGATAGGGAACCCCATATCTCAAAGTGATGATTTGAAGGAGGATTGATTTGCTCATAAAGAAGTTACGAGTTTAAGTCAGAGATAGAACAGACTTATGCTTGCTGCTTTTTCTTGTATATTATGTAGAATGCACTGTTCAATTCATTTTGATAGTCTTTTGGTTCCTGAAAAAACACCGGTAATGGAGTATTGTGCTCATTTCAGGCCAAAAAAGTCTTTTCTTCTTTCTTTGTGTGTGTATATGAAGTGTCTTGTATATGTTTATTTTGTTTTCTTGAAGTTATACTCATTTATTATATTTTTGGTACTTATTAAGGAACAGCAAATGATCAGCGCAAGCTGACAATGAATCAGGCACTTGTAGTCATTTCCCTCCCCAGAGTCTCCATTCATTGCTCATATATCTTCTCTTCCTTTTTTGTGTATGTTATGTCTTCATGGGCAGGTGATCGGCATGCACTTTATGAATCCTCCGCCGATTATGAAGCTGGTTGAAATTATTCGGGGTGCAGATACATCAGAAGACACATATTGTGCCACTAAATGCCTGGCAGAGAGGTGACTGATAAGAAAACCCTGCAACTAGTATTTACCTTTATATGCACGTCTCGTCAACACTTCCTTTTTTAAAAAAAATTCTGCCTTGAATATTTACGCTTTCAGATACGACAGTCATTTATAATCTACATGTCTTATGGATATAACATTTCCCAAAGCTTCACCAACCCCAAACACAATCTCTCATCCTAGCTGCAAAGGCTCATTATGTATCCCTGTTTAATGTTTGTTAATAGATGCAACCGAACAATGAGAAAGTGGTCTTCATTATGTCCCTGTCTCAAGATGTGAGATTGTTTGTTATCTATAATATGTCTACATAAACGTTTTTTCTTTTAAGCTTCATAAGCAACATGGACAAAGCTTATACAGTATCTCTTATTTCCGATATATGAAATGAATTAAAATACAGGTAAAAGAATAGTTTCTTACCCTCTGTAACTAATTTCTGATTTATCTATTATTTGCAGGTTTGGTAAGACAGTTATCTGCTCTCAGGATTACTCTGGTTTCATAGTAAACCGAATTTTGATGCCAATGATAAACGAAGCCTTTCATACACTGTACACCGGAGTTGCAACAAAAGAAGATATCGATACAGGAATGAAACTAGGAACCAACCATCCTATGGGTCCTCTTGAACTTGCAGATTTTATCGGACTGGATGTTTGTTTGTCAATCATGAAAGTTCTTCAAGCCGGTCTAGGGGACGATAAATATGCCCCATGCCCTCTCCTTGTGCAGTATGTTGATGCTGGTAGACTTGGTAAAAAGCGAGGCGTTGGTGTATATGATTACCGTAATGCTGCTAAGAAAACAGGAGGATCGCCTCGACTCTGAACTCCTTGCCCTTGGATTTGATGAAACAAATTACAACTTGTTGAAATACTCTCCTTGTACAATTCAATAAAAGAGAGAAAAATTCACGGTGTAATTGTTCTCATCTTATTGCATAGCTTTTGTTGTGTCAAGTCCAGGCTTTTTGCCAAATTCCTCCCTCATTTTTGTATTACATCCTGCAGCTTATAATGATCCAAGTTTGGCCAACGACAACAAACCCGATGTAATCCCACAAGCTGGATCTGGAGAGGGTGGTGTGTACATGAAACTGTTCCCCAAGTTGTGGCCATTGTAATATTTAAGTAAAAGCTAAAAATCAACCTTAATTAAATTAAATTAAATTAAATTTCCTTATACCATTAGTACGTTACCTTTATCCATGTGCTTGATATCAAACACATACAGTCAATTTCATATAAACTATATATAACAACATATTTACCCTGAAACCTCCATTTCAGTTTCATTTTCCTCTCACTTCACTAATTTCAGTTTCTTGTCCATTTTATTTATCCCCCTTGTGATTTTGTGACATTTTATGTATCTTTACAGTTATTAAACTATCATAGTAAGAAAATCTCTTGCATATTTTGAAACAGAAGAAAATTTCAAA</genome_strand>
        <mrna_strand>TTAGGTAGCTTTTTTAGTGATAATCTGAATAAATTTTTTAGGCATGGCCGATATAACAAGGATCGGAGTTGTTGGCGCCGGCCAAATGGGTGCCGGAATCGCCCAACTCGCCGCCGTCAACGGCGTCGACGTTTGGCTTTACGATTTGGATTCTGAAGCTCTTACTAAAGCTCAAAAATCTATTTCCAATAATATTCAACGCCTCCTCACCAAAGGACAAATCTCTCAG........................................................................................................................................................................................................................................................................................................GCAACGAGTGTTGATGCTGTGAAGCGTCTTCGTTGTTCTTCGCGCTTGGATGATTTACAGTCAGTTGATATTGTTGTTGAGGCTATTGTGGAGTCTGAACAAGTGAAGAAATCTTTATTTGCTAACTTGGATAAGATTGTAAAGAGTTCTGCTATTTTGGCTTCTAATACAAGCTCTATTTCCATTACTCGTCTAGCATCTGCAACGAGCCGACCCTCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATCGGCATGCACTTTATGAATCCTCCGCCGATTATGAAGCTGGTTGAAATTATTCGGGGTGCAGATACATCAGAAGACACATATTGTGCCACTAAATGCCTGGCAGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTAAGACAGTTATCTGCTCTCAGGATTACTCTGGTTTCATAGTAAACCGAATTTTGATGCCAATGATAAACGAAGCCTTTCATACACTGTACACCGGAGTTGCAACAAAAGAAGATATCGATACAGGAATGAAACTAGGAACCAACCATCCTATGGGTCCTTTTGAACTTGCAGATTTTATCGGACTGGATGTTTGTTTGTCAATCATGAAAGTTTTTCAAGCCGGTTTAGGGGACGATAAATATGCCCCATGCCCTCTCCTTGTGCAGTATGTTGATGCTGGTAGACTTGGTAAAAAACGAGGGGTTGGGGTATATGATTACCGTAATGCTGGTAAAAAAACAGGAGGATCGCCTCGACTTTGAACTCCTTGCCCTTGGATTTGATGAAACAAATTACAACTTGTTGAAATACTTTCCTTGTACAATTCAATAAAAAAAAAAAAAATTCCCGGGGTAATTGTTTTCATTTTATTGCATAGCTTTTGTTGTGTCCA.....................................................................................................................................................................................................AAAAAAAAAAAAAAAAA..............................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-2q6wGS/sgn_marker_seqs" ref_id="SGN-M4674-3" ref_strand="+" ref_description="SGN-M4674-3 C2_At3g15290-3 [cosii_markers]">
      <seq>catctgaataattttttttaggcatggccgatatcacaagaatgggagttgttggcgccggccaaatgggtgccggaattgctcaactcgccgccgtcaacggcgtcgacgtttggctttacgatttggattctgaagctcttactaaagcccaaaaatctatttccaataatattcaacgcctcctcaccaaaggacaaatctctcaggcaacgagtgtggatgctgtgaagcgtcttcgttgttcatcgcgcttggaagatttacattcagttgatattgttgttgaggctattgtggaatctgaacaagtgaagaaaactttatttgctaacttggataagattgtaaagagctctgctattttggcttctaatacaagctctatttccattactcgtctagcatctgcaacgagccgaccttcccaggtgattggcatgcactttatgaatcctccaccgattatgaagctggttgaaattatccgtggtgcagatacatcagaagacacatattgtgccactaaatgcctggcagagaggtttggtaagacagttatctgctctcaggattactctggcttcatagtaaaccgaattttgatgcctatgataaacgaagcttttcatacactgtacacccggtgttgcaacaaaagaagacattgatacgggaatgaaactaggaaccaaccatccntatgggtcctttggaacttgcagattttatcggactgggatgtttgtttatcaatcatggaaagttcttcaagccggtctaggggacgataaatatgccccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0046G04-4ze7b/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0046G04.1" temp_strand="-" temp_description="C07HBa0046G04.1  AC210353.2 htgs_phase:2 submitted_to_sgn_as:C07HBa0046G04 upload_account_name:france">
        <position start="82071" stop="78895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81772" g_stop="81565" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81564" i_stop="81269" i_length="296">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81268" g_stop="81047" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="431" r_length="222" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81046" i_stop="80036" i_length="1011">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80035" g_stop="79923" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="544" r_length="113" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79922" i_stop="79453" i_length="470">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79452" g_stop="79195" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="806" r_length="262" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0046G04.1" gen_strand="-" ref_id="SGN-M4674-3" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0046G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M4674-3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81772" e_stop="81565"/>
          <exon e_start="81268" e_stop="81047"/>
          <exon e_start="80035" e_stop="79923"/>
          <exon e_start="79452" e_stop="79195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGAATAA-ATTTTTTAGGCATGGCCGATATAACAAGGATCGGAGTTGTTGGCGCCGGCCAAATGGGTGCCGGAATCGCCCAACTCGCCGCCGTCAACGGCGTCGACGTTTGGCTTTACGATTTGGATTCTGAAGCTCTTACTAAAGCTCAAAAATCTATTTCCAATAATATTCAACGCCTCCTCACCAAAGGACAAATCTCTCAGGTATTATTACTCCTTTCGTTTGAGCTGAAAGCTTTTGTAAATTGCTTGCTTTGAATTTTACGTTTTTTAATAAGATTTTGCTTGCTTTGAATTTTACGTTTTGGAGTTCTGGAATATAAAGTCAGAATTGATTCATCACAAATGTTTGAAAAATTCTTGTGAAAAAAGCTGGTTTGATTCTCAAAGTTGTACTACTTACTCTATGAAGGTGTTGTTTAGGGTTAATTTGGGAGTTATTTATAAGAAATGTGAACTGTGTTGAGTTCATGTGTTTGATGATCTCATTGATGAAACAGGCAACGAGTGTTGATGCTGTGAAGCGTCTTCGTTGTTCTTCGCGCTTGGATGATTTACAGTCAGTTGATATTGTTGTTGAGGCTATTGTGGAGTCTGAACAAGTGAAGAAATCTTTATTTGCTAACTTGGATAAGATTGTAAAGAGTTCTGCTATTTTGGCTTCTAATACAAGCTCTATTTCCATTACTCGTCTAGCATCTGCAACGAGCCGACCCTCTCAGGTTTGCTTTTCTTGGCTGTTGATTGATTGTAGACTGAAAGATGTTATATGGAACTTATTGAAAACAGAATAACTTTGTTCGTATGCAAATATGTGTGTTGAAGTTCAGGAAAATGCCAACATTCAAACAATTGCATAACTTTCTTGCTCACTTCCTTTTTTGAATCATTCAGAAGGAAGATGTGTGAAATTCATCTATATCATGTTGTCTGTCCTTTCAGACTTGTGGAATCTCAATGCCTAGGCACTCTTGCCCGAGCTGGTAGAATTTCTTGTGGTTGTATTATGGTTGCACTAGTGTGTATGTCCCATCTTTAGTAGTCATCATCACCTGTAAAAACACACATTGATTAACTTTATGATGAGATTGTCTGTATTTCTCAGGAACAACATATAGAATATTATAGTATTGGTAAGGTGAGGGAATTATCTTTCGTCGGGTCAATGAAGTGGTTGGTAAGATTGAAGGTGTAAGGCATCTCACTGCTAATCAGAAGACAAGGGACTAAAAGAACTTCTAAATGGCTGCTAAAAAGCAATACTGGAATGTCGTTGTTATGAATAACTGATAGGGAACCCCATATCTCAAAGTGATGATTTGAAGGAGGATTGATTTGCTCATAAAGAAGTTACGAGTTTAAGTCAGAGATAGAACAGACTTATGCTTGCTGCTTTTTCTTGTATATTATGTAGAATGCACTGTTCAATTCATTTTGATAGTCTTTTGGTTCCTGAAAAAACACCGGTAATGGAGTATTGTGCTCATTTCAGGCCAAAAAAGTCTTTTCTTCTTTCTTTGTGTGTGTATATGAAGTGTCTTGTATATGTTTATTTTGTTTTCTTGAAGTTATACTCATTTATTATATTTTTGGTACTTATTAAGGAACAGCAAATGATCAGCGCAAGCTGACAATGAATCAGGCACTTGTAGTCATTTCCCTCCCCAGAGTCTCCATTCATTGCTCATATATCTTCTCTTCCTTTTTTGTGTATGTTATGTCTTCATGGGCAGGTGATCGGCATGCACTTTATGAATCCTCCGCCGATTATGAAGCTGGTTGAAATTATTCGGGGTGCAGATACATCAGAAGACACATATTGTGCCACTAAATGCCTGGCAGAGAGGTGACTGATAAGAAAACCCTGCAACTAGTATTTACCTTTATATGCACGTCTCGTCAACACTTCCTTTTTTAAAAAAAATTCTGCCTTGAATATTTACGCTTTCAGATACGACAGTCATTTATAATCTACATGTCTTATGGATATAACATTTCCCAAAGCTTCACCAACCCCAAACACAATCTCTCATCCTAGCTGCAAAGGCTCATTATGTATCCCTGTTTAATGTTTGTTAATAGATGCAACCGAACAATGAGAAAGTGGTCTTCATTATGTCCCTGTCTCAAGATGTGAGATTGTTTGTTATCTATAATATGTCTACATAAACGTTTTTTCTTTTAAGCTTCATAAGCAACATGGACAAAGCTTATACAGTATCTCTTATTTCCGATATATGAAATGAATTAAAATACAGGTAAAAGAATAGTTTCTTACCCTCTGTAACTAATTTCTGATTTATCTATTATTTGCAGGTTTGGTAAGACAGTTATCTGCTCTCAGGATTACTCTGGTTTCATAGTAAACCGAATTTTGATGCCAATGATAAACGAAGCCTTTCATACACTGTACA-CCGGAGTTGCAACAAAAGAAGATATCGATACAGGAATGAAACTAGGAACCAACCATCC-TATGGGTCCTCTTGAACTTGCAGATTTTATCGGACT-GGATGTTTGTTTGTCAATCAT-GAAAGTTCTTCAAGCCGGTCTAGGGGACGATAAATATGCCCCATG</genome_strand>
        <mrna_strand>CATCTGAATAATTTTTTTTAGGCATGGCCGATATCACAAGAATGGGAGTTGTTGGCGCCGGCCAAATGGGTGCCGGAATTGCTCAACTCGCCGCCGTCAACGGCGTCGACGTTTGGCTTTACGATTTGGATTCTGAAGCTCTTACTAAAGCCCAAAAATCTATTTCCAATAATATTCAACGCCTCCTCACCAAAGGACAAATCTCTCAG........................................................................................................................................................................................................................................................................................................GCAACGAGTGTGGATGCTGTGAAGCGTCTTCGTTGTTCATCGCGCTTGGAAGATTTACATTCAGTTGATATTGTTGTTGAGGCTATTGTGGAATCTGAACAAGTGAAGAAAACTTTATTTGCTAACTTGGATAAGATTGTAAAGAGCTCTGCTATTTTGGCTTCTAATACAAGCTCTATTTCCATTACTCGTCTAGCATCTGCAACGAGCCGACCTTCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGGCATGCACTTTATGAATCCTCCACCGATTATGAAGCTGGTTGAAATTATCCGTGGTGCAGATACATCAGAAGACACATATTGTGCCACTAAATGCCTGGCAGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTAAGACAGTTATCTGCTCTCAGGATTACTCTGGCTTCATAGTAAACCGAATTTTGATGCCTATGATAAACGAAGCTTTTCATACACTGTACACCCGGTGTTGCAACAAAAGAAGACATTGATACGGGAATGAAACTAGGAACCAACCATCCNTATGGGTCCTTTGGAACTTGCAGATTTTATCGGACTGGGATGTTTGTTTATCAATCATGGAAAGTTCTTCAAGCCGGTCTAGGGGACGATAAATATGCCCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="28320" PGL_stop="29127"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28320" e_stop="28717"/>
            <exon e_start="29053" e_stop="29127"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.972"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="28320" e_stop="28717" e_length="398"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28718" i_stop="29052" i_length="335"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29053" e_stop="29127" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28320" stop="28717"/>
              <exon start="29053" stop="29127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1883" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCAGGGACTTCTCGGTTTGTATTTCATTGAAATATGGGTGTAGAGGTGGAAGCTAAGTTAGTTCATGTTCCAGTTGAAGCTGGAACTGAACAGATCAATCTTCTGAAAGAAAATGGAAAGCCGAATCATGTTTCAGGGATTACGGAGCCAATAAAATTCGGCTCTCATGGGACTGAAGAACCTAAGGAGGAAATAAGTAGAATTCCTGTGAGCAATGTTCCAAAGGATGCGGTTGAGGATTGGCCTGAACCTAAGCAGGTCCATTCGTTCTATACTGTTAAATTTCGGAGATTTGACGACCCTAAACTGAAAGCCAGAATTGAACTGGCTGAAAAAGAGCTACAGAAAAAGAACCAAGCTAGATCTCAGATCATTGAAAAATTGAAGGCCAAAAGG : GCTGAAAAATCAATTTTCATTGAACAAAGGAAAGCCCTCAGTGCTGAGAATAAGGAATTTCGGAGTGCTATTGAT</gDNA_template>
            <first_frame> D  Q  G  L  L  G  L  Y  F  I  E  I  W  V  *  R  W  K  L  S  *  F  M  F  Q  L  K  L  E  L  N  R  S  I  F  *  K  K  M  E  S  R  I  M  F  Q  G  L  R  S  Q  *  N  S  A  L  M  G  L  K  N  L  R  R  K  *  V  E  F  L  *  A  M  F  Q  R  M  R  L  R  I  G  L  N  L  S  R  S  I  R  S  I  L  L  N  F  G  D  L  T  T  L  N  *  K  P  E  L  N  W  L  K  K  S  Y  R  K  R  T  K  L  D  L  R  S  L  K  N  *  R  P  K  G :   L  K  N  Q  F  S  L  N  K  G  K  P  S  V  L  R  I  R  N  F  G  V  L  L   </first_frame>
            <second_frame>  I  R  D  F  S  V  C  I  S  L  K  Y  G  C  R  G  G  S  *  V  S  S  C  S  S  *  S  W  N  *  T  D  Q  S  S  E  R  K  W  K  A  E  S  C  F  R  D  Y  G  A  N  K  I  R  L  S  W  D  *  R  T  *  G  G  N  K  *  N  S  C  E  Q  C  S  K  G  C  G  *  G  L  A  *  T  *  A  G  P  F  V  L  Y  C  *  I  S  E  I  *  R  P  *  T  E  S  Q  N  *  T  G  *  K  R  A  T  E  K  E  P  S  *  I  S  D  H  *  K  I  E  G  Q  K   : G  *  K  I  N  F  H  *  T  K  E  S  P  Q  C  *  E  *  G  I  S  E  C  Y  *  </second_frame>
            <third_frame>   S  G  T  S  R  F  V  F  H  *  N  M  G  V  E  V  E  A  K  L  V  H  V  P  V  E  A  G  T  E  Q  I  N  L  L  K  E  N  G  K  P  N  H  V  S  G  I  T  E  P  I  K  F  G  S  H  G  T  E  E  P  K  E  E  I  S  R  I  P  V  S  N  V  P  K  D  A  V  E  D  W  P  E  P  K  Q  V  H  S  F  Y  T  V  K  F  R  R  F  D  D  P  K  L  K  A  R  I  E  L  A  E  K  E  L  Q  K  K  N  Q  A  R  S  Q  I  I  E  K  L  K  A  K  R  :  A  E  K  S  I  F  I  E  Q  R  K  A  L  S  A  E  N  K  E  F  R  S  A  I  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0046G04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28352" stop="28717"/>
                    <exon start="29053" stop="29127"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMGVEVEAKLVHVPVEAGTEQINLLKENGKPNHVSGITEPIKFGSHGTEEPKEEISRIPVSNVPKDAVEDWPEPKQVHSFYTVKFRRFDDPKLKARIELAEKELQKKNQARSQIIEKLKAKRAEKSIFIEQRKALSAENKEFRSAID</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="81793" PGL_stop="78470"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81793" e_stop="81565"/>
            <exon e_start="81268" e_stop="81047"/>
            <exon e_start="80035" e_stop="79923"/>
            <exon e_start="79452" e_stop="78952"/>
            <exon e_start="78754" e_stop="78738"/>
            <exon e_start="78483" e_stop="78470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.857" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.964"/>
          <exon-intron don_prob="0.900" acc_prob="0.920" e_score="0.647"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81793" e_stop="81565" e_length="229"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.927">
            <gDNA_intron_boundary i_start="81564" i_stop="81269" i_length="296"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81268" e_stop="81047" e_length="222"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="81046" i_stop="80036" i_length="1011"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80035" e_stop="79923" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.857" acc_prob="0.996">
            <gDNA_intron_boundary i_start="79922" i_stop="79453" i_length="470"/>
          </intron>
          <exon e_serial="4" e_score="0.964">
            <gDNA_exon_boundary e_start="79452" e_stop="78952" e_length="501"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78951" i_stop="78755" i_length="197"/>
          </intron>
          <exon e_serial="5" e_score="0.647">
            <gDNA_exon_boundary e_start="78754" e_stop="78738" e_length="17"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.920">
            <gDNA_intron_boundary i_start="78737" i_stop="78484" i_length="254"/>
          </intron>
          <exon e_serial="6" e_score="0.643">
            <gDNA_exon_boundary e_start="78483" e_stop="78470" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81793" stop="81565"/>
              <exon start="81268" stop="81047"/>
              <exon start="80035" stop="79923"/>
              <exon start="79452" stop="78952"/>
              <exon start="78754" stop="78738"/>
              <exon start="78483" stop="78470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4674-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81772" stop="81565"/>
              <exon start="81268" stop="81047"/>
              <exon start="80035" stop="79923"/>
              <exon start="79452" stop="79195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4674-3" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTAGCTTTTTTAGTGATAATCTGAATAAATTTTTTAGGCATGGCCGATATAACAAGGATCGGAGTTGTTGGCGCCGGCCAAATGGGTGCCGGAATCGCCCAACTCGCCGCCGTCAACGGCGTCGACGTTTGGCTTTACGATTTGGATTCTGAAGCTCTTACTAAAGCTCAAAAATCTATTTCCAATAATATTCAACGCCTCCTCACCAAAGGACAAATCTCTCAG : GCAACGAGTGTTGATGCTGTGAAGCGTCTTCGTTGTTCTTCGCGCTTGGATGATTTACAGTCAGTTGATATTGTTGTTGAGGCTATTGTGGAGTCTGAACAAGTGAAGAAATCTTTATTTGCTAACTTGGATAAGATTGTAAAGAGTTCTGCTATTTTGGCTTCTAATACAAGCTCTATTTCCATTACTCGTCTAGCATCTGCAACGAGCCGACCCTCTCAG : GTGATCGGCATGCACTTTATGAATCCTCCGCCGATTATGAAGCTGGTTGAAATTATTCGGGGTGCAGATACATCAGAAGACACATATTGTGCCACTAAATGCCTGGCAGAGAG : GTTTGGTAAGACAGTTATCTGCTCTCAGGATTACTCTGGTTTCATAGTAAACCGAATTTTGATGCCAATGATAAACGAAGCCTTTCATACACTGTACACCGGAGTTGCAACAAAAGAAGATATCGATACAGGAATGAAACTAGGAACCAACCATCCTATGGGTCCTCTTGAACTTGCAGATTTTATCGGACTGGATGTTTGTTTGTCAATCATGAAAGTTCTTCAAGCCGGTCTAGGGGACGATAAATATGCCCCATGCCCTCTCCTTGTGCAGTATGTTGATGCTGGTAGACTTGGTAAAAAGCGAGGCGTTGGTGTATATGATTACCGTAATGCTGCTAAGAAAACAGGAGGATCGCCTCGACTCTGAACTCCTTGCCCTTGGATTTGATGAAACAAATTACAACTTGTTGAAATACTCTCCTTGTACAATTCAATAAAAGAGAGAAAAATTCACGGTGTAATTGTTCTCATCTTATTGCATAGCTTTTGTTGTGTCAA : AAATTAAATTAAATTAA : AAGAAAATTTCAAA</gDNA_template>
            <first_frame> L  G  S  F  F  S  D  N  L  N  K  F  F  R  H  G  R  Y  N  K  D  R  S  C  W  R  R  P  N  G  C  R  N  R  P  T  R  R  R  Q  R  R  R  R  L  A  L  R  F  G  F  *  S  S  Y  *  S  S  K  I  Y  F  Q  *  Y  S  T  P  P  H  Q  R  T  N  L  S   : G  N  E  C  *  C  C  E  A  S  S  L  F  F  A  L  G  *  F  T  V  S  *  Y  C  C  *  G  Y  C  G  V  *  T  S  E  E  I  F  I  C  *  L  G  *  D  C  K  E  F  C  Y  F  G  F  *  Y  K  L  Y  F  H  Y  S  S  S  I  C  N  E  P  T  L  S   : G  D  R  H  A  L  Y  E  S  S  A  D  Y  E  A  G  *  N  Y  S  G  C  R  Y  I  R  R  H  I  L  C  H  *  M  P  G  R  E  :  V  W  *  D  S  Y  L  L  S  G  L  L  W  F  H  S  K  P  N  F  D  A  N  D  K  R  S  L  S  Y  T  V  H  R  S  C  N  K  R  R  Y  R  Y  R  N  E  T  R  N  Q  P  S  Y  G  S  S  *  T  C  R  F  Y  R  T  G  C  L  F  V  N  H  E  S  S  S  S  R  S  R  G  R  *  I  C  P  M  P  S  P  C  A  V  C  *  C  W  *  T  W  *  K  A  R  R  W  C  I  *  L  P  *  C  C  *  E  N  R  R  I  A  S  T  L  N  S  L  P  L  D  L  M  K  Q  I  T  T  C  *  N  T  L  L  V  Q  F  N  K  R  E  K  N  S  R  C  N  C  S  H  L  I  A  *  L  L  L  C  Q  :  K  L  N  *  I  K :   R  K  F  Q  </first_frame>
            <second_frame>  *  V  A  F  L  V  I  I  *  I  N  F  L  G  M  A  D  I  T  R  I  G  V  V  G  A  G  Q  M  G  A  G  I  A  Q  L  A  A  V  N  G  V  D  V  W  L  Y  D  L  D  S  E  A  L  T  K  A  Q  K  S  I  S  N  N  I  Q  R  L  L  T  K  G  Q  I  S  Q  :  A  T  S  V  D  A  V  K  R  L  R  C  S  S  R  L  D  D  L  Q  S  V  D  I  V  V  E  A  I  V  E  S  E  Q  V  K  K  S  L  F  A  N  L  D  K  I  V  K  S  S  A  I  L  A  S  N  T  S  S  I  S  I  T  R  L  A  S  A  T  S  R  P  S  Q  :  V  I  G  M  H  F  M  N  P  P  P  I  M  K  L  V  E  I  I  R  G  A  D  T  S  E  D  T  Y  C  A  T  K  C  L  A  E  R :   F  G  K  T  V  I  C  S  Q  D  Y  S  G  F  I  V  N  R  I  L  M  P  M  I  N  E  A  F  H  T  L  Y  T  G  V  A  T  K  E  D  I  D  T  G  M  K  L  G  T  N  H  P  M  G  P  L  E  L  A  D  F  I  G  L  D  V  C  L  S  I  M  K  V  L  Q  A  G  L  G  D  D  K  Y  A  P  C  P  L  L  V  Q  Y  V  D  A  G  R  L  G  K  K  R  G  V  G  V  Y  D  Y  R  N  A  A  K  K  T  G  G  S  P  R  L  *  T  P  C  P  W  I  *  *  N  K  L  Q  L  V  E  I  L  S  L  Y  N  S  I  K  E  R  K  I  H  G  V  I  V  L  I  L  L  H  S  F  C  C  V  K :   N  *  I  K  L   : K  E  N  F  K </second_frame>
            <third_frame>   R  *  L  F  *  *  *  S  E  *  I  F  *  A  W  P  I  *  Q  G  S  E  L  L  A  P  A  K  W  V  P  E  S  P  N  S  P  P  S  T  A  S  T  F  G  F  T  I  W  I  L  K  L  L  L  K  L  K  N  L  F  P  I  I  F  N  A  S  S  P  K  D  K  S  L  R :   Q  R  V  L  M  L  *  S  V  F  V  V  L  R  A  W  M  I  Y  S  Q  L  I  L  L  L  R  L  L  W  S  L  N  K  *  R  N  L  Y  L  L  T  W  I  R  L  *  R  V  L  L  F  W  L  L  I  Q  A  L  F  P  L  L  V  *  H  L  Q  R  A  D  P  L  R :   *  S  A  C  T  L  *  I  L  R  R  L  *  S  W  L  K  L  F  G  V  Q  I  H  Q  K  T  H  I  V  P  L  N  A  W  Q  R   : G  L  V  R  Q  L  S  A  L  R  I  T  L  V  S  *  *  T  E  F  *  C  Q  *  *  T  K  P  F  I  H  C  T  P  E  L  Q  Q  K  K  I  S  I  Q  E  *  N  *  E  P  T  I  L  W  V  L  L  N  L  Q  I  L  S  D  W  M  F  V  C  Q  S  *  K  F  F  K  P  V  *  G  T  I  N  M  P  H  A  L  S  L  C  S  M  L  M  L  V  D  L  V  K  S  E  A  L  V  Y  M  I  T  V  M  L  L  R  K  Q  E  D  R  L  D  S  E  L  L  A  L  G  F  D  E  T  N  Y  N  L  L  K  Y  S  P  C  T  I  Q  *  K  R  E  K  F  T  V  *  L  F  S  S  Y  C  I  A  F  V  V  S   : K  I  K  L  N  *  :  K  K  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0046G04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81765" stop="81565"/>
                    <exon start="81268" stop="81047"/>
                    <exon start="80035" stop="79923"/>
                    <exon start="79452" stop="79083"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>903</number_coding_nucleotides>
                  <number_encoded_amino_acids>301</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INFLGMADITRIGVVGAGQMGAGIAQLAAVNGVDVWLYDLDSEALTKAQKSISNNIQRLLTKGQISQATSVDAVKRLRCSSRLDDLQSVDIVVEAIVESEQVKKSLFANLDKIVKSSAILASNTSSISITRLASATSRPSQVIGMHFMNPPPIMKLVEIIRGADTSEDTYCATKCLAERFGKTVICSQDYSGFIVNRILMPMINEAFHTLYTGVATKEDIDTGMKLGTNHPMGPLELADFIGLDVCLSIMKVLQAGLGDDKYAPCPLLVQYVDAGRLGKKRGVGVYDYRNAAKKTGGSPRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 49 chains have been computed
$ 
$ memory statistics:
$ 126904 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 42301 bytes was the average size of a spliced alignment
$ 6896 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3448 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 49 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 08:33:29
-->
