<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-23 14:10:28"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268189" ref_strand="+" ref_description="SGN-E268189 [cLEI-15-B12]">
      <seq>caggctggtttccatggaaaacgtattccagcagttagcagtttacaggagcatattgttaaatcaacaccggcaagatataacagtacacaggcatgtttggaaaatgatatttctggaactgataataaagggttcaagggtcatgatatgttggcacccttcactgctgggtggcaaagtactgatgttgatcctttgattatagagaagtctgagggatcccatgtctatgacatgcaagggaggaagtatattgatactctagctggtttgtggtgcacagcactaggggggaacgagcctcgcctggttgatgctgccactaagcaattaaacacattgccgttttaccattcattttggaaccgtacaacaaaaccttctttggatcttgcgaaggagcttctagatatgttcactgcaaagaaaatggcaaaagcttttttcaccaatagtggatcagaagccaatgatacccaggtgaagctggtctggtattataacaatgctcttggaaggccaaacaaaaagaaatttatagctcgagcaaaagcatatcatggttcaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="9472" stop="12074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9771" g_stop="9904" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9905" i_stop="10110" i_length="206">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10111" g_stop="10195" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="219" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10196" i_stop="10277" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10278" g_stop="10350" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="292" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10351" i_stop="11001" i_length="651">
            <donor d_prob="0.586" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11002" g_stop="11099" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="390" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113">
            <donor d_prob="0.584" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11213" g_stop="11305" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="483" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11597" g_stop="11670" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="557" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="11758" g_stop="11774" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="574" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E268189" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9771" e_stop="9904"/>
          <exon e_start="10111" e_stop="10195"/>
          <exon e_start="10278" e_stop="10350"/>
          <exon e_start="11002" e_stop="11099"/>
          <exon e_start="11213" e_stop="11305"/>
          <exon e_start="11597" e_stop="11670"/>
          <exon e_start="11758" e_stop="11774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TANGCTGGTTTCCATGGAAAACGTATTCCAGCAGTTAGCAGTTTACAGGAGCATATTGTTAAATCAACACCGGCAAGATATAACAGTACACAGGCATGTTTGGAAACTGATATTTCTGGAACTGATAATAAAGGGTAAATTCTGTTCACTTTCCAACCGCTGGATCTCTTTTTTTGCGTTCCTTATTTATGGACAGTCATTGCTAAATGACATGGCCTTTCTTCATGAGTACTACTCTATATTTAGTCATCTGTGGAATATATTTCACTCATTTGACATAAAAGCTGCACTTGCAAGCATAAAAGGAATTTAACTAAACAATGTATCTCCGCTTTTGCAGGTTCAAGGGTCATGATATGTTGGCACCCTTCACTGCTGGGTGGCAAAGTACTGATGTTGATCCTTTGATTATAGAGAAGTCTGAGGTTAGATTTATGTCTAGTTTTGCTGTCTAACTTGAGAGAACTTTATATATCTTTCGTGATTAACTTTTACATTTTGACATAGGGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAGGTACTTTCGATCCCTTTTATTCAGTCTTTGGCGTACTAATTCTAGCTCCAAGTATATTAACATGCATATGTCTTTCATGTATGTTTTTTTAGTCTGGTTAACATCAACAGTCACACATTGACACACTTAAGTGTTCTGCCATGTCAGATGTTTTTCTTTCACAATTTAACTGCATAATTCTTTTCGGTAATGACAATAAGTATTTGCGTCATGATTATAACATCCAAACAATTTACTTTAAAAATGAAAGTTCAGTCCATTGATGAAAACGTTGTGTATTTTCATTTTATTAATAATCAATGTCTGCTATGTTATCCTGATGTGTTGCATTTGAAATGTGTTGAAGACTAACAACTTGAACCATATATTGCAGTATTTCCATCGATGAGAACTTGTAGAATTGTTTTGATCTACTGCTGAATGTCTCCATGTTGAACTGTGACAGTCTANTGCATGGTCAATAAACTGGAGACAGGCCTTAGAGCGGCCTTTAAAGTTTTATTTATGTGATTGCTCAAATATACAGAACAGAACACTTTTAAACCTAGACAATAGCTAATTTCTGACAGCTGTGGAACTTTGCAATGAGTTTTATTTATGATGTAATTGGAGCACATGTACAATGCTTTACCAACTTAAATATTCTTGTANGGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTGGTATGACAAAAACTTTGCAGTGTCTTTACATGAAAAGGAAAATTAAGTGATGCCTAAATTTGGGTTTTTAAGTTTTTCTTGGAACTCATGTTGATTGCATTTTGAAAATACAGGATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAGGTTTTGCTTATTGCCTTCAAACACTTGATTATATAATTAGATCTCAGTTCTTTTCTTTAAACACTTGATAATTCATCAGAAGAACATCGTTTTTGGGATAGTGAAAGAGTGGGACATTATAATTGTTTTGAAAATTGTAAATTTATTCTGTTAGGATATGAAATGAATACAGTAGATACTTGAATTTTTTTAAATTTTTTTTGTATAGAAGTTTGATAAAAATAGCAGGAGATTATGTGAAGAAGTTTATGAGTATAATTTGTAACTTTTTCCCTTATACTTCAAATGTAGGTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGCGTAATTTGTGAATCTCTATCTATTTTTTTTCTTTTGGTTTCCTTTTTCCTTAGTCTTACTAATGTTTTTGTTCATTCATTGTAACAGATATCATGGTTCAACTC</genome_strand>
        <mrna_strand>CAGGCTGGTTTCCATGGAAAACGTATTCCAGCAGTTAGCAGTTTACAGGAGCATATTGTTAAATCAACACCGGCAAGATATAACAGTACACAGGCATGTTTGGAAAATGATATTTCTGGAACTGATAATAAAGG..............................................................................................................................................................................................................GTTCAAGGGTCATGATATGTTGGCACCCTTCACTGCTGGGTGGCAAAGTACTGATGTTGATCCTTTGATTATAGAGAAGTCTGAG..................................................................................GGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTG.................................................................................................................GATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG...................................................................................................................................................................................................................................................................................................GTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC.......................................................................................ATATCATGGTTCAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213573" ref_strand="+" ref_description="SGN-E213573 [cLEC-71-H22]">
      <seq>ctttttggatccaccgtgaaagcagctatcaccgcccaggctggtttccatggaaaacgtattccagcagttagcagtttacaggagcatattgttaaatcaacaccggcaagatataacagtacacaggcatgtttggaaaatgatatttctggaactgataataaagggttcaagggtcatgatatgttggcacccttcactgctgggtggcaaagtactgatgttgatcctttgattatagagaagtctgagggatcccatgtctatgacatgcaagggaggaagtatattgatactctagctggtttgtggtgcacagcactaggggggaacgagcctcgcctggttgatgctgccactaagcaattaaacacattgccgttttaccattcattttggaaccgtacaacaaaaccttctttggatcttgcgaaggagcttctagatatgttcactgcaaagaaaatggcaaaagcttttttcaccaatagtggatcagaagccaatgatacccaggtgaagctggtctggtattataacaatgctcttggaaggccaaacaaaaagaaatttatagctcgagcaaaagcatatcatggttcaactcttatttctgccagtctcactggccttcctgcattacatcaaaattttgatcttcctgctccatttgttcttcacaccgactgtcctcattattggcgttatcatctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="9472" stop="12272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9772" g_stop="9904" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="170" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9905" i_stop="10110" i_length="206">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10111" g_stop="10195" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="255" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10196" i_stop="10277" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10278" g_stop="10350" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="328" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10351" i_stop="11001" i_length="651">
            <donor d_prob="0.586" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11002" g_stop="11099" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="426" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113">
            <donor d_prob="0.584" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11213" g_stop="11305" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="519" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11597" g_stop="11670" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="593" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="11758" g_stop="11796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="632" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="11886" g_stop="11972" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="719" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E213573" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9772" e_stop="9904"/>
          <exon e_start="10111" e_stop="10195"/>
          <exon e_start="10278" e_stop="10350"/>
          <exon e_start="11002" e_stop="11099"/>
          <exon e_start="11213" e_stop="11305"/>
          <exon e_start="11597" e_stop="11670"/>
          <exon e_start="11758" e_stop="11796"/>
          <exon e_start="11886" e_stop="11972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ANGCTGGTTTCCATGGAAAACGTATTCCAGCAGTTAGCAGTTTACAGGAGCATATTGTTAAATCAACACCGGCAAGATATAACAGTACACAGGCATGTTTGGAAACTGATATTTCTGGAACTGATAATAAAGGGTAAATTCTGTTCACTTTCCAACCGCTGGATCTCTTTTTTTGCGTTCCTTATTTATGGACAGTCATTGCTAAATGACATGGCCTTTCTTCATGAGTACTACTCTATATTTAGTCATCTGTGGAATATATTTCACTCATTTGACATAAAAGCTGCACTTGCAAGCATAAAAGGAATTTAACTAAACAATGTATCTCCGCTTTTGCAGGTTCAAGGGTCATGATATGTTGGCACCCTTCACTGCTGGGTGGCAAAGTACTGATGTTGATCCTTTGATTATAGAGAAGTCTGAGGTTAGATTTATGTCTAGTTTTGCTGTCTAACTTGAGAGAACTTTATATATCTTTCGTGATTAACTTTTACATTTTGACATAGGGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAGGTACTTTCGATCCCTTTTATTCAGTCTTTGGCGTACTAATTCTAGCTCCAAGTATATTAACATGCATATGTCTTTCATGTATGTTTTTTTAGTCTGGTTAACATCAACAGTCACACATTGACACACTTAAGTGTTCTGCCATGTCAGATGTTTTTCTTTCACAATTTAACTGCATAATTCTTTTCGGTAATGACAATAAGTATTTGCGTCATGATTATAACATCCAAACAATTTACTTTAAAAATGAAAGTTCAGTCCATTGATGAAAACGTTGTGTATTTTCATTTTATTAATAATCAATGTCTGCTATGTTATCCTGATGTGTTGCATTTGAAATGTGTTGAAGACTAACAACTTGAACCATATATTGCAGTATTTCCATCGATGAGAACTTGTAGAATTGTTTTGATCTACTGCTGAATGTCTCCATGTTGAACTGTGACAGTCTANTGCATGGTCAATAAACTGGAGACAGGCCTTAGAGCGGCCTTTAAAGTTTTATTTATGTGATTGCTCAAATATACAGAACAGAACACTTTTAAACCTAGACAATAGCTAATTTCTGACAGCTGTGGAACTTTGCAATGAGTTTTATTTATGATGTAATTGGAGCACATGTACAATGCTTTACCAACTTAAATATTCTTGTANGGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTGGTATGACAAAAACTTTGCAGTGTCTTTACATGAAAAGGAAAATTAAGTGATGCCTAAATTTGGGTTTTTAAGTTTTTCTTGGAACTCATGTTGATTGCATTTTGAAAATACAGGATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAGGTTTTGCTTATTGCCTTCAAACACTTGATTATATAATTAGATCTCAGTTCTTTTCTTTAAACACTTGATAATTCATCAGAAGAACATCGTTTTTGGGATAGTGAAAGAGTGGGACATTATAATTGTTTTGAAAATTGTAAATTTATTCTGTTAGGATATGAAATGAATACAGTAGATACTTGAATTTTTTTAAATTTTTTTTGTATAGAAGTTTGATAAAAATAGCAGGAGATTATGTGAAGAAGTTTATGAGTATAATTTGTAACTTTTTCCCTTATACTTCAAATGTAGGTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGCGTAATTTGTGAATCTCTATCTATTTTTTTTCTTTTGGTTTCCTTTTTCCTTAGTCTTACTAATGTTTTTGTTCATTCATTGTAACAGATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGGGTAATATAATAAAACATCATTTGAAATCAAAATCACTGAGATTCATTATTATGCTTCAAGTATCAGTTTTCTAATACTTTCTTTTGTAGCCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCC</genome_strand>
        <mrna_strand>AGGCTGGTTTCCATGGAAAACGTATTCCAGCAGTTAGCAGTTTACAGGAGCATATTGTTAAATCAACACCGGCAAGATATAACAGTACACAGGCATGTTTGGAAAATGATATTTCTGGAACTGATAATAAAGG..............................................................................................................................................................................................................GTTCAAGGGTCATGATATGTTGGCACCCTTCACTGCTGGGTGGCAAAGTACTGATGTTGATCCTTTGATTATAGAGAAGTCTGAG..................................................................................GGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTG.................................................................................................................GATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG...................................................................................................................................................................................................................................................................................................GTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC.......................................................................................ATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGG.........................................................................................CCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580760" ref_strand="+" ref_description="SGN-E580760 [6003]">
      <seq>cagctggtttccatgcaaaacgtattccacagttagcagtttacaggagcatatagttaaatcaaacaccgggcaagatatagtagtacacaggcatgtttggaaaatgacatttctggaactgataataaagggttcaagggtcatgatatgttggcacccttcactgctgggtggcaaagtactgatgtggatcctttgattatagagaagtctgaggatcccacgtatatgacatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="9474" stop="10498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9772" g_stop="9904" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9905" i_stop="10110" i_length="206">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10111" g_stop="10195" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="218" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10196" i_stop="10277" i_length="82">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10278" g_stop="10300" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="241" r_length="23" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E580760" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>241</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E580760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9772" e_stop="9904"/>
          <exon e_start="10111" e_stop="10195"/>
          <exon e_start="10278" e_stop="10300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ANGCTGGTTTCCATGGAAAACGTATTCCAGCAGTTAGCAGTTTACAGGAGCATATTGTTAAATC-AACACC-GGCAAGATATAACAGTACACAGGCATGTTTGGAAACTGATATTTCTGGAACTGATAATAAAGGGTAAATTCTGTTCACTTTCCAACCGCTGGATCTCTTTTTTTGCGTTCCTTATTTATGGACAGTCATTGCTAAATGACATGGCCTTTCTTCATGAGTACTACTCTATATTTAGTCATCTGTGGAATATATTTCACTCATTTGACATAAAAGCTGCACTTGCAAGCATAAAAGGAATTTAACTAAACAATGTATCTCCGCTTTTGCAGGTTCAAGGGTCATGATATGTTGGCACCCTTCACTGCTGGGTGGCAAAGTACTGATGTTGATCCTTTGATTATAGAGAAGTCTGAGGTTAGATTTATGTCTAGTTTTGCTGTCTAACTTGAGAGAACTTTATATATCTTTCGTGATTAACTTTTACATTTTGACATAGGGATCCCATGTCTATGACATGCA</genome_strand>
        <mrna_strand>CAGCTGGTTTCCATGCAAAACGTATTCCA-CAGTTAGCAGTTTACAGGAGCATATAGTTAAATCAAACACCGGGCAAGATATAGTAGTACACAGGCATGTTTGGAAAATGACATTTCTGGAACTGATAATAAAGG..............................................................................................................................................................................................................GTTCAAGGGTCATGATATGTTGGCACCCTTCACTGCTGGGTGGCAAAGTACTGATGTGGATCCTTTGATTATAGAGAAGTCTGA-..................................................................................GGATCCCACGTATATGACATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303266" ref_strand="+" ref_description="SGN-E303266 [cLEX-5-J21]">
      <seq>ttccatggaaaacgtattccagcagctagcattttacaggagcatattggtaaatcaacaccggcaagatataacagtacacaggcatgtttggaaaatgatatttctggaactgataataaagggttcaagggtcatgatatgttggcacccttcactgctgggtggcaaagaactgatgttgatcctttgattatacagaagtctgacggatcccatgtctatgacatgcaagggaggaagtatattgatactctagctggtttgtggtgcacagcactaggggggaacgagccttgcctggttgatgctgccactaatcaattaaacacattgccgtgctaccattcattttggaaccgtacaacacaaccttttttggatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="9480" stop="11403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9780" g_stop="9904" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9905" i_stop="10110" i_length="206">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10111" g_stop="10195" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="210" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10196" i_stop="10277" i_length="82">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10278" g_stop="10350" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="283" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10351" i_stop="11001" i_length="651">
            <donor d_prob="0.586" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11002" g_stop="11099" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="381" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113">
            <donor d_prob="0.584" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11213" g_stop="11218" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="387" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E303266" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9780" e_stop="9904"/>
          <exon e_start="10111" e_stop="10195"/>
          <exon e_start="10278" e_stop="10350"/>
          <exon e_start="11002" e_stop="11099"/>
          <exon e_start="11213" e_stop="11218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATGGAAAACGTATTCCAGCAGTTAGCAGTTTACAGGAGCATATTGTTAAATCAACACCGGCAAGATATAACAGTACACAGGCATGTTTGGAAACTGATATTTCTGGAACTGATAATAAAGGGTAAATTCTGTTCACTTTCCAACCGCTGGATCTCTTTTTTTGCGTTCCTTATTTATGGACAGTCATTGCTAAATGACATGGCCTTTCTTCATGAGTACTACTCTATATTTAGTCATCTGTGGAATATATTTCACTCATTTGACATAAAAGCTGCACTTGCAAGCATAAAAGGAATTTAACTAAACAATGTATCTCCGCTTTTGCAGGTTCAAGGGTCATGATATGTTGGCACCCTTCACTGCTGGGTGGCAAAGTACTGATGTTGATCCTTTGATTATAGAGAAGTCTGAGGTTAGATTTATGTCTAGTTTTGCTGTCTAACTTGAGAGAACTTTATATATCTTTCGTGATTAACTTTTACATTTTGACATAGGGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAGGTACTTTCGATCCCTTTTATTCAGTCTTTGGCGTACTAATTCTAGCTCCAAGTATATTAACATGCATATGTCTTTCATGTATGTTTTTTTAGTCTGGTTAACATCAACAGTCACACATTGACACACTTAAGTGTTCTGCCATGTCAGATGTTTTTCTTTCACAATTTAACTGCATAATTCTTTTCGGTAATGACAATAAGTATTTGCGTCATGATTATAACATCCAAACAATTTACTTTAAAAATGAAAGTTCAGTCCATTGATGAAAACGTTGTGTATTTTCATTTTATTAATAATCAATGTCTGCTATGTTATCCTGATGTGTTGCATTTGAAATGTGTTGAAGACTAACAACTTGAACCATATATTGCAGTATTTCCATCGATGAGAACTTGTAGAATTGTTTTGATCTACTGCTGAATGTCTCCATGTTGAACTGTGACAGTCTANTGCATGGTCAATAAACTGGAGACAGGCCTTAGAGCGGCCTTTAAAGTTTTATTTATGTGATTGCTCAAATATACAGAACAGAACACTTTTAAACCTAGACAATAGCTAATTTCTGACAGCTGTGGAACTTTGCAATGAGTTTTATTTATGATGTAATTGGAGCACATGTACAATGCTTTACCAACTTAAATATTCTTGTANGGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTGGTATGACAAAAACTTTGCAGTGTCTTTACATGAAAAGGAAAATTAAGTGATGCCTAAATTTGGGTTTTTAAGTTTTTCTTGGAACTCATGTTGATTGCATTTTGAAAATACAGGATCTT</genome_strand>
        <mrna_strand>TTCCATGGAAAACGTATTCCAGCAGCTAGCATTTTACAGGAGCATATTGGTAAATCAACACCGGCAAGATATAACAGTACACAGGCATGTTTGGAAAATGATATTTCTGGAACTGATAATAAAGG..............................................................................................................................................................................................................GTTCAAGGGTCATGATATGTTGGCACCCTTCACTGCTGGGTGGCAAAGAACTGATGTTGATCCTTTGATTATACAGAAGTCTGAC..................................................................................GGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAACGAGCCTTGCCTGGTTGATGCTGCCACTAATCAATTAAACACATTGCCGTGCTACCATTCATTTTGGAACCGTACAACACAACCTTTTTTG.................................................................................................................GATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297324" ref_strand="+" ref_description="SGN-E297324 [cLET-29-L14]">
      <seq>tttacaggagcatattgttaaatcaacaccggcaagatataacagtacacaggcatgtttggaaaatgatatttctggaactgataataaagggttcaagggtcatgatatgttggcacccttcactgctgggtggcaaagtactgatgttgatcctttgattatagagaagtctgagggatcccatgtctatgacatgcaagggaggaagtatattgatactctagctggtttgtggtgcacagcactaggggggaacgagcctcgcctggttgatgctgccactaagcaattaaacacattgccgttttaccattcattttggaaccgtacaacaaaaccttctttggatcttgcgaaggagcttctagatatgttcactgcaaagaaaatggcaaaagcttttttcaccaatagtggatcagaagccaatgatacccaggtgaagctggtctggtattataacaatgctcttggaaggccaaacaaaaagaaatttatagctcgagcaaaagcatatcatggttcaactcttatttctgccagtctcactggccttcctgcattacatcaaaattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="9512" stop="12211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9812" g_stop="9904" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9905" i_stop="10110" i_length="206">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10111" g_stop="10195" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="178" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10196" i_stop="10277" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10278" g_stop="10350" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="251" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10351" i_stop="11001" i_length="651">
            <donor d_prob="0.586" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11002" g_stop="11099" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="349" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113">
            <donor d_prob="0.584" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11213" g_stop="11305" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="442" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11597" g_stop="11670" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="516" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="11758" g_stop="11796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="555" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="11886" g_stop="11911" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="581" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E297324" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9812" e_stop="9904"/>
          <exon e_start="10111" e_stop="10195"/>
          <exon e_start="10278" e_stop="10350"/>
          <exon e_start="11002" e_stop="11099"/>
          <exon e_start="11213" e_stop="11305"/>
          <exon e_start="11597" e_stop="11670"/>
          <exon e_start="11758" e_stop="11796"/>
          <exon e_start="11886" e_stop="11911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACAGGAGCATATTGTTAAATCAACACCGGCAAGATATAACAGTACACAGGCATGTTTGGAAACTGATATTTCTGGAACTGATAATAAAGGGTAAATTCTGTTCACTTTCCAACCGCTGGATCTCTTTTTTTGCGTTCCTTATTTATGGACAGTCATTGCTAAATGACATGGCCTTTCTTCATGAGTACTACTCTATATTTAGTCATCTGTGGAATATATTTCACTCATTTGACATAAAAGCTGCACTTGCAAGCATAAAAGGAATTTAACTAAACAATGTATCTCCGCTTTTGCAGGTTCAAGGGTCATGATATGTTGGCACCCTTCACTGCTGGGTGGCAAAGTACTGATGTTGATCCTTTGATTATAGAGAAGTCTGAGGTTAGATTTATGTCTAGTTTTGCTGTCTAACTTGAGAGAACTTTATATATCTTTCGTGATTAACTTTTACATTTTGACATAGGGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAGGTACTTTCGATCCCTTTTATTCAGTCTTTGGCGTACTAATTCTAGCTCCAAGTATATTAACATGCATATGTCTTTCATGTATGTTTTTTTAGTCTGGTTAACATCAACAGTCACACATTGACACACTTAAGTGTTCTGCCATGTCAGATGTTTTTCTTTCACAATTTAACTGCATAATTCTTTTCGGTAATGACAATAAGTATTTGCGTCATGATTATAACATCCAAACAATTTACTTTAAAAATGAAAGTTCAGTCCATTGATGAAAACGTTGTGTATTTTCATTTTATTAATAATCAATGTCTGCTATGTTATCCTGATGTGTTGCATTTGAAATGTGTTGAAGACTAACAACTTGAACCATATATTGCAGTATTTCCATCGATGAGAACTTGTAGAATTGTTTTGATCTACTGCTGAATGTCTCCATGTTGAACTGTGACAGTCTANTGCATGGTCAATAAACTGGAGACAGGCCTTAGAGCGGCCTTTAAAGTTTTATTTATGTGATTGCTCAAATATACAGAACAGAACACTTTTAAACCTAGACAATAGCTAATTTCTGACAGCTGTGGAACTTTGCAATGAGTTTTATTTATGATGTAATTGGAGCACATGTACAATGCTTTACCAACTTAAATATTCTTGTANGGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTGGTATGACAAAAACTTTGCAGTGTCTTTACATGAAAAGGAAAATTAAGTGATGCCTAAATTTGGGTTTTTAAGTTTTTCTTGGAACTCATGTTGATTGCATTTTGAAAATACAGGATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAGGTTTTGCTTATTGCCTTCAAACACTTGATTATATAATTAGATCTCAGTTCTTTTCTTTAAACACTTGATAATTCATCAGAAGAACATCGTTTTTGGGATAGTGAAAGAGTGGGACATTATAATTGTTTTGAAAATTGTAAATTTATTCTGTTAGGATATGAAATGAATACAGTAGATACTTGAATTTTTTTAAATTTTTTTTGTATAGAAGTTTGATAAAAATAGCAGGAGATTATGTGAAGAAGTTTATGAGTATAATTTGTAACTTTTTCCCTTATACTTCAAATGTAGGTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGCGTAATTTGTGAATCTCTATCTATTTTTTTTCTTTTGGTTTCCTTTTTCCTTAGTCTTACTAATGTTTTTGTTCATTCATTGTAACAGATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGGGTAATATAATAAAACATCATTTGAAATCAAAATCACTGAGATTCATTATTATGCTTCAAGTATCAGTTTTCTAATACTTTCTTTTGTAGCCTTCCTGCATTACATCAAAATTTTG</genome_strand>
        <mrna_strand>TTTACAGGAGCATATTGTTAAATCAACACCGGCAAGATATAACAGTACACAGGCATGTTTGGAAAATGATATTTCTGGAACTGATAATAAAGG..............................................................................................................................................................................................................GTTCAAGGGTCATGATATGTTGGCACCCTTCACTGCTGGGTGGCAAAGTACTGATGTTGATCCTTTGATTATAGAGAAGTCTGAG..................................................................................GGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTG.................................................................................................................GATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG...................................................................................................................................................................................................................................................................................................GTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC.......................................................................................ATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGG.........................................................................................CCTTCCTGCATTACATCAAAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200723" ref_strand="+" ref_description="SGN-E200723 [cLEC-9-E3]">
      <seq>taaatcaacaccggcaagatataacagtacacaggcatgtttggaaaatgatatttctggaactgataataaagggttcaagggtcatgatatgttggcacccttcactgctgggtggcaaagtactgatgttgatcctttgattatagagaagtctgagggatcccatgtctatgacatgcaagggaggaagtatattgatactctagctggtttgtggtgcacagcactaggggggaacgagcctcgcctggttgatgctgccactaagcaattaaacacattgccgttttaccattcattttggaaccgtacaacaaaaccttctttggatcttgcgaaggagcttctagatatgttcactgcaaagaaaatggcaaaagcttttttcaccaatagtggatcagaagccaatgatacccaggtgaagctggtctggtattataacaatgctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="9530" stop="11930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9830" g_stop="9904" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9905" i_stop="10110" i_length="206">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10111" g_stop="10195" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="160" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10196" i_stop="10277" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10278" g_stop="10350" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="233" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10351" i_stop="11001" i_length="651">
            <donor d_prob="0.586" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11002" g_stop="11099" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="331" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113">
            <donor d_prob="0.584" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11213" g_stop="11305" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="424" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11597" g_stop="11630" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="458" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E200723" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9830" e_stop="9904"/>
          <exon e_start="10111" e_stop="10195"/>
          <exon e_start="10278" e_stop="10350"/>
          <exon e_start="11002" e_stop="11099"/>
          <exon e_start="11213" e_stop="11305"/>
          <exon e_start="11597" e_stop="11630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCAACACCGGCAAGATATAACAGTACACAGGCATGTTTGGAAACTGATATTTCTGGAACTGATAATAAAGGGTAAATTCTGTTCACTTTCCAACCGCTGGATCTCTTTTTTTGCGTTCCTTATTTATGGACAGTCATTGCTAAATGACATGGCCTTTCTTCATGAGTACTACTCTATATTTAGTCATCTGTGGAATATATTTCACTCATTTGACATAAAAGCTGCACTTGCAAGCATAAAAGGAATTTAACTAAACAATGTATCTCCGCTTTTGCAGGTTCAAGGGTCATGATATGTTGGCACCCTTCACTGCTGGGTGGCAAAGTACTGATGTTGATCCTTTGATTATAGAGAAGTCTGAGGTTAGATTTATGTCTAGTTTTGCTGTCTAACTTGAGAGAACTTTATATATCTTTCGTGATTAACTTTTACATTTTGACATAGGGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAGGTACTTTCGATCCCTTTTATTCAGTCTTTGGCGTACTAATTCTAGCTCCAAGTATATTAACATGCATATGTCTTTCATGTATGTTTTTTTAGTCTGGTTAACATCAACAGTCACACATTGACACACTTAAGTGTTCTGCCATGTCAGATGTTTTTCTTTCACAATTTAACTGCATAATTCTTTTCGGTAATGACAATAAGTATTTGCGTCATGATTATAACATCCAAACAATTTACTTTAAAAATGAAAGTTCAGTCCATTGATGAAAACGTTGTGTATTTTCATTTTATTAATAATCAATGTCTGCTATGTTATCCTGATGTGTTGCATTTGAAATGTGTTGAAGACTAACAACTTGAACCATATATTGCAGTATTTCCATCGATGAGAACTTGTAGAATTGTTTTGATCTACTGCTGAATGTCTCCATGTTGAACTGTGACAGTCTANTGCATGGTCAATAAACTGGAGACAGGCCTTAGAGCGGCCTTTAAAGTTTTATTTATGTGATTGCTCAAATATACAGAACAGAACACTTTTAAACCTAGACAATAGCTAATTTCTGACAGCTGTGGAACTTTGCAATGAGTTTTATTTATGATGTAATTGGAGCACATGTACAATGCTTTACCAACTTAAATATTCTTGTANGGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTGGTATGACAAAAACTTTGCAGTGTCTTTACATGAAAAGGAAAATTAAGTGATGCCTAAATTTGGGTTTTTAAGTTTTTCTTGGAACTCATGTTGATTGCATTTTGAAAATACAGGATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAGGTTTTGCTTATTGCCTTCAAACACTTGATTATATAATTAGATCTCAGTTCTTTTCTTTAAACACTTGATAATTCATCAGAAGAACATCGTTTTTGGGATAGTGAAAGAGTGGGACATTATAATTGTTTTGAAAATTGTAAATTTATTCTGTTAGGATATGAAATGAATACAGTAGATACTTGAATTTTTTTAAATTTTTTTTGTATAGAAGTTTGATAAAAATAGCAGGAGATTATGTGAAGAAGTTTATGAGTATAATTTGTAACTTTTTCCCTTATACTTCAAATGTAGGTGAAGCTGGTCTGGTATTATAACAATGCTCTTG</genome_strand>
        <mrna_strand>TAAATCAACACCGGCAAGATATAACAGTACACAGGCATGTTTGGAAAATGATATTTCTGGAACTGATAATAAAGG..............................................................................................................................................................................................................GTTCAAGGGTCATGATATGTTGGCACCCTTCACTGCTGGGTGGCAAAGTACTGATGTTGATCCTTTGATTATAGAGAAGTCTGAG..................................................................................GGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTG.................................................................................................................GATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG...................................................................................................................................................................................................................................................................................................GTGAAGCTGGTCTGGTATTATAACAATGCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207303" ref_strand="+" ref_description="SGN-E207303 [cLEC-30-F3]">
      <seq>tgatatttctggaactgataataaagggttcaagggtcatgatatgttggcacccttcactgctgggtggcaaagtactgatgttgatcctttgattatagagaagtctgagggatcccatgtctatgacatgcaagggaggaagtatattgatactctagctggtttgtggtgcacagcactaggggggaacgagcctcgcctggttgatgctgccactaagcaattaaacacattgccgttttaccattcattttggaaccgtacaacaaaaccttctttggatcttgcgaaggagcttctagatatgttcactgcaaagaaaatggcaaaagcttttttcaccaatagtggatcagaagccaatgatacccaggtgaagctggtctggtattataacaatgctcttggaaggccaaacaaaaagaaatttatagctcgagcaaaagcatatcatggttcaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="9578" stop="12074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9878" g_stop="9904" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9905" i_stop="10110" i_length="206">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10111" g_stop="10195" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="112" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10196" i_stop="10277" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10278" g_stop="10350" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="185" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10351" i_stop="11001" i_length="651">
            <donor d_prob="0.586" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11002" g_stop="11099" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="283" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113">
            <donor d_prob="0.584" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11213" g_stop="11305" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="376" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11597" g_stop="11670" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="450" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="11758" g_stop="11774" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="467" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E207303" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9878" e_stop="9904"/>
          <exon e_start="10111" e_stop="10195"/>
          <exon e_start="10278" e_stop="10350"/>
          <exon e_start="11002" e_stop="11099"/>
          <exon e_start="11213" e_stop="11305"/>
          <exon e_start="11597" e_stop="11670"/>
          <exon e_start="11758" e_stop="11774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATTTCTGGAACTGATAATAAAGGGTAAATTCTGTTCACTTTCCAACCGCTGGATCTCTTTTTTTGCGTTCCTTATTTATGGACAGTCATTGCTAAATGACATGGCCTTTCTTCATGAGTACTACTCTATATTTAGTCATCTGTGGAATATATTTCACTCATTTGACATAAAAGCTGCACTTGCAAGCATAAAAGGAATTTAACTAAACAATGTATCTCCGCTTTTGCAGGTTCAAGGGTCATGATATGTTGGCACCCTTCACTGCTGGGTGGCAAAGTACTGATGTTGATCCTTTGATTATAGAGAAGTCTGAGGTTAGATTTATGTCTAGTTTTGCTGTCTAACTTGAGAGAACTTTATATATCTTTCGTGATTAACTTTTACATTTTGACATAGGGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAGGTACTTTCGATCCCTTTTATTCAGTCTTTGGCGTACTAATTCTAGCTCCAAGTATATTAACATGCATATGTCTTTCATGTATGTTTTTTTAGTCTGGTTAACATCAACAGTCACACATTGACACACTTAAGTGTTCTGCCATGTCAGATGTTTTTCTTTCACAATTTAACTGCATAATTCTTTTCGGTAATGACAATAAGTATTTGCGTCATGATTATAACATCCAAACAATTTACTTTAAAAATGAAAGTTCAGTCCATTGATGAAAACGTTGTGTATTTTCATTTTATTAATAATCAATGTCTGCTATGTTATCCTGATGTGTTGCATTTGAAATGTGTTGAAGACTAACAACTTGAACCATATATTGCAGTATTTCCATCGATGAGAACTTGTAGAATTGTTTTGATCTACTGCTGAATGTCTCCATGTTGAACTGTGACAGTCTANTGCATGGTCAATAAACTGGAGACAGGCCTTAGAGCGGCCTTTAAAGTTTTATTTATGTGATTGCTCAAATATACAGAACAGAACACTTTTAAACCTAGACAATAGCTAATTTCTGACAGCTGTGGAACTTTGCAATGAGTTTTATTTATGATGTAATTGGAGCACATGTACAATGCTTTACCAACTTAAATATTCTTGTANGGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTGGTATGACAAAAACTTTGCAGTGTCTTTACATGAAAAGGAAAATTAAGTGATGCCTAAATTTGGGTTTTTAAGTTTTTCTTGGAACTCATGTTGATTGCATTTTGAAAATACAGGATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAGGTTTTGCTTATTGCCTTCAAACACTTGATTATATAATTAGATCTCAGTTCTTTTCTTTAAACACTTGATAATTCATCAGAAGAACATCGTTTTTGGGATAGTGAAAGAGTGGGACATTATAATTGTTTTGAAAATTGTAAATTTATTCTGTTAGGATATGAAATGAATACAGTAGATACTTGAATTTTTTTAAATTTTTTTTGTATAGAAGTTTGATAAAAATAGCAGGAGATTATGTGAAGAAGTTTATGAGTATAATTTGTAACTTTTTCCCTTATACTTCAAATGTAGGTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGCGTAATTTGTGAATCTCTATCTATTTTTTTTCTTTTGGTTTCCTTTTTCCTTAGTCTTACTAATGTTTTTGTTCATTCATTGTAACAGATATCATGGTTCAACTC</genome_strand>
        <mrna_strand>TGATATTTCTGGAACTGATAATAAAGG..............................................................................................................................................................................................................GTTCAAGGGTCATGATATGTTGGCACCCTTCACTGCTGGGTGGCAAAGTACTGATGTTGATCCTTTGATTATAGAGAAGTCTGAG..................................................................................GGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTG.................................................................................................................GATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG...................................................................................................................................................................................................................................................................................................GTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC.......................................................................................ATATCATGGTTCAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320169" ref_strand="+" ref_description="SGN-E320169 [cTOB-21-N24]">
      <seq>ggttcaagggtcatgatatgttggcacccttcactgctgggtggcaaagtactgatgttgatcctttgattatagagaagtctgagggatcccatgtctatgacatgcaagggaggaagtatattgatactctagctggtttgtggtgcacagcactaggggggaacgagcctcgcctggttgatgctgccactaagcaattaaacacattgccgttttaccattcattttggaaccgtacaacaaaaccttctttggatcttgcgaaggagcttctagatatgttcactgcaaagaaaatggcaaaagcttttttcaccaatagtggatcagaagccaatgatacccaggtgaagctggtctggtattataacaatgctcttggaaggccaaacaaaaagaaatttatagctcgagcaaaagcatatcatggttcaactcttatttctgccagtctcactggccttcctgcattacatcaaaattttgatcttcctgctccatttgttcttcacaccgactgtcctcattattggcgttatcatctgccaggtgagacagaggaggagttctccaccaggttggctaaaaatttagaagatcttatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="9810" stop="12415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10110" g_stop="10195" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10196" i_stop="10277" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10278" g_stop="10350" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="159" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10351" i_stop="11001" i_length="651">
            <donor d_prob="0.586" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11002" g_stop="11099" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="257" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113">
            <donor d_prob="0.584" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11305" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="350" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11597" g_stop="11670" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="424" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11758" g_stop="11796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="463" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="11886" g_stop="11974" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="552" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="12059" g_stop="12115" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="609" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E320169" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10110" e_stop="10195"/>
          <exon e_start="10278" e_stop="10350"/>
          <exon e_start="11002" e_stop="11099"/>
          <exon e_start="11213" e_stop="11305"/>
          <exon e_start="11597" e_stop="11670"/>
          <exon e_start="11758" e_stop="11796"/>
          <exon e_start="11886" e_stop="11974"/>
          <exon e_start="12059" e_stop="12115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCAAGGGTCATGATATGTTGGCACCCTTCACTGCTGGGTGGCAAAGTACTGATGTTGATCCTTTGATTATAGAGAAGTCTGAGGTTAGATTTATGTCTAGTTTTGCTGTCTAACTTGAGAGAACTTTATATATCTTTCGTGATTAACTTTTACATTTTGACATAGGGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAGGTACTTTCGATCCCTTTTATTCAGTCTTTGGCGTACTAATTCTAGCTCCAAGTATATTAACATGCATATGTCTTTCATGTATGTTTTTTTAGTCTGGTTAACATCAACAGTCACACATTGACACACTTAAGTGTTCTGCCATGTCAGATGTTTTTCTTTCACAATTTAACTGCATAATTCTTTTCGGTAATGACAATAAGTATTTGCGTCATGATTATAACATCCAAACAATTTACTTTAAAAATGAAAGTTCAGTCCATTGATGAAAACGTTGTGTATTTTCATTTTATTAATAATCAATGTCTGCTATGTTATCCTGATGTGTTGCATTTGAAATGTGTTGAAGACTAACAACTTGAACCATATATTGCAGTATTTCCATCGATGAGAACTTGTAGAATTGTTTTGATCTACTGCTGAATGTCTCCATGTTGAACTGTGACAGTCTANTGCATGGTCAATAAACTGGAGACAGGCCTTAGAGCGGCCTTTAAAGTTTTATTTATGTGATTGCTCAAATATACAGAACAGAACACTTTTAAACCTAGACAATAGCTAATTTCTGACAGCTGTGGAACTTTGCAATGAGTTTTATTTATGATGTAATTGGAGCACATGTACAATGCTTTACCAACTTAAATATTCTTGTANGGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTGGTATGACAAAAACTTTGCAGTGTCTTTACATGAAAAGGAAAATTAAGTGATGCCTAAATTTGGGTTTTTAAGTTTTTCTTGGAACTCATGTTGATTGCATTTTGAAAATACAGGATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAGGTTTTGCTTATTGCCTTCAAACACTTGATTATATAATTAGATCTCAGTTCTTTTCTTTAAACACTTGATAATTCATCAGAAGAACATCGTTTTTGGGATAGTGAAAGAGTGGGACATTATAATTGTTTTGAAAATTGTAAATTTATTCTGTTAGGATATGAAATGAATACAGTAGATACTTGAATTTTTTTAAATTTTTTTTGTATAGAAGTTTGATAAAAATAGCAGGAGATTATGTGAAGAAGTTTATGAGTATAATTTGTAACTTTTTCCCTTATACTTCAAATGTAGGTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGCGTAATTTGTGAATCTCTATCTATTTTTTTTCTTTTGGTTTCCTTTTTCCTTAGTCTTACTAATGTTTTTGTTCATTCATTGTAACAGATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGGGTAATATAATAAAACATCATTTGAAATCAAAATCACTGAGATTCATTATTATGCTTCAAGTATCAGTTTTCTAATACTTTCTTTTGTAGCCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAGGTTGTTACTTATTCTTAATGACTCTTACTTTTCTCCTCTTCCTATGGTGTAATAAACCATTTTATGTTGAAATGTATATATCAGGTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCC</genome_strand>
        <mrna_strand>GGTTCAAGGGTCATGATATGTTGGCACCCTTCACTGCTGGGTGGCAAAGTACTGATGTTGATCCTTTGATTATAGAGAAGTCTGAG..................................................................................GGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTG.................................................................................................................GATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG...................................................................................................................................................................................................................................................................................................GTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC.......................................................................................ATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGG.........................................................................................CCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAG....................................................................................GTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332057" ref_strand="+" ref_description="SGN-E332057 [cTOD-16-C19]">
      <seq>tgatatgttggcacccttcactgctgggtggcaaagtactgatgttgatcctttgattatagagaagtctgagggaccccatgtctatgacatgcaagggaggaagtatattgatactctagctggtttgtggtgcacagcactaggggggaacgagcctcgcctggttgatgctgccactaagcaattaaacacattgccgttttaccattcattttggaaccgtacaacaaaaccttctttggatcttgcgaaggagcttctagatatgttcactgcaaagaaaatggcaaaagcttttttcaccaatagtggatcagaagccaatgatacccaggtgaagctggtctggtattataacaatgctcttggaaggccaaacaaaaagaaatttatagctcgagcaaaagcatatcatggttcaactcttatttctgccagtctcactggccttcctgcattacatcaaaattttgatcttcctgctccatttgttcttcacaccgactgtcctcattattggcgttatcatctgccaggtgagacagaggaggagttctccaccaggttggctaaaaatttagaagatcttatcctcaaagaggggcctgaaacaatagctgcttttattgctgaaccagtcatggnggcaggangtgtcatacctccctcagctacctatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="9823" stop="12589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10123" g_stop="10195" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10196" i_stop="10277" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10278" g_stop="10350" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="146" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10351" i_stop="11001" i_length="651">
            <donor d_prob="0.586" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11002" g_stop="11099" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="244" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113">
            <donor d_prob="0.584" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11305" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="337" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11597" g_stop="11670" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="411" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11758" g_stop="11796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="450" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="11886" g_stop="11974" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="539" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="12059" g_stop="12135" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="616" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="12221" g_stop="12289" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="685" r_length="69" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E332057" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10123" e_stop="10195"/>
          <exon e_start="10278" e_stop="10350"/>
          <exon e_start="11002" e_stop="11099"/>
          <exon e_start="11213" e_stop="11305"/>
          <exon e_start="11597" e_stop="11670"/>
          <exon e_start="11758" e_stop="11796"/>
          <exon e_start="11886" e_stop="11974"/>
          <exon e_start="12059" e_stop="12135"/>
          <exon e_start="12221" e_stop="12289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATGTTGGCACCCTTCACTGCTGGGTGGCAAAGTACTGATGTTGATCCTTTGATTATAGAGAAGTCTGAGGTTAGATTTATGTCTAGTTTTGCTGTCTAACTTGAGAGAACTTTATATATCTTTCGTGATTAACTTTTACATTTTGACATAGGGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAGGTACTTTCGATCCCTTTTATTCAGTCTTTGGCGTACTAATTCTAGCTCCAAGTATATTAACATGCATATGTCTTTCATGTATGTTTTTTTAGTCTGGTTAACATCAACAGTCACACATTGACACACTTAAGTGTTCTGCCATGTCAGATGTTTTTCTTTCACAATTTAACTGCATAATTCTTTTCGGTAATGACAATAAGTATTTGCGTCATGATTATAACATCCAAACAATTTACTTTAAAAATGAAAGTTCAGTCCATTGATGAAAACGTTGTGTATTTTCATTTTATTAATAATCAATGTCTGCTATGTTATCCTGATGTGTTGCATTTGAAATGTGTTGAAGACTAACAACTTGAACCATATATTGCAGTATTTCCATCGATGAGAACTTGTAGAATTGTTTTGATCTACTGCTGAATGTCTCCATGTTGAACTGTGACAGTCTANTGCATGGTCAATAAACTGGAGACAGGCCTTAGAGCGGCCTTTAAAGTTTTATTTATGTGATTGCTCAAATATACAGAACAGAACACTTTTAAACCTAGACAATAGCTAATTTCTGACAGCTGTGGAACTTTGCAATGAGTTTTATTTATGATGTAATTGGAGCACATGTACAATGCTTTACCAACTTAAATATTCTTGTANGGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTGGTATGACAAAAACTTTGCAGTGTCTTTACATGAAAAGGAAAATTAAGTGATGCCTAAATTTGGGTTTTTAAGTTTTTCTTGGAACTCATGTTGATTGCATTTTGAAAATACAGGATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAGGTTTTGCTTATTGCCTTCAAACACTTGATTATATAATTAGATCTCAGTTCTTTTCTTTAAACACTTGATAATTCATCAGAAGAACATCGTTTTTGGGATAGTGAAAGAGTGGGACATTATAATTGTTTTGAAAATTGTAAATTTATTCTGTTAGGATATGAAATGAATACAGTAGATACTTGAATTTTTTTAAATTTTTTTTGTATAGAAGTTTGATAAAAATAGCAGGAGATTATGTGAAGAAGTTTATGAGTATAATTTGTAACTTTTTCCCTTATACTTCAAATGTAGGTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGCGTAATTTGTGAATCTCTATCTATTTTTTTTCTTTTGGTTTCCTTTTTCCTTAGTCTTACTAATGTTTTTGTTCATTCATTGTAACAGATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGGGTAATATAATAAAACATCATTTGAAATCAAAATCACTGAGATTCATTATTATGCTTCAAGTATCAGTTTTCTAATACTTTCTTTTGTAGCCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAGGTTGTTACTTATTCTTAATGACTCTTACTTTTCTCCTCTTCCTATGGTGTAATAAACCATTTTATGTTGAAATGTATATATCAGGTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACAGTAACTTCCATCAACTTTTACTCTTGCTACTCAGTTTGTATATTGAGGGTGATTTATTGCTGATTAATTTGCTTTTTCACCTCAGATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTT</genome_strand>
        <mrna_strand>TGATATGTTGGCACCCTTCACTGCTGGGTGGCAAAGTACTGATGTTGATCCTTTGATTATAGAGAAGTCTGAG..................................................................................GGACCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTG.................................................................................................................GATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG...................................................................................................................................................................................................................................................................................................GTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC.......................................................................................ATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGG.........................................................................................CCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAG....................................................................................GTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACA.....................................................................................ATAGCTGCTTTTATTGCTGAACCAGTCATGGNGGCAGGANGTGTCATACCTCCCTCAGCTACCTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200051" ref_strand="+" ref_description="SGN-E200051 [cLEC-8-I10]">
      <seq>aagtactgatgttgatcctttgattatagagaagtctgagggatcccatgtctatgacatgcaagggaggaagtatattgatactctagctggtttgtggtgcacagcactaggggggaacgagcctcgcctggttgatgctgccactaagcaattaaacacattgccgttttaccattcattttggaaccgtacaacaaaaccttctttggatcttgcgaaggagcttctagatatgttcactgcaaagaaaatggcaaaagcttttttcaccaatagtggatcagaagccaatgatacccaggtgaagctggtctggtattataacaatgctcttggaaggccaaacaaaaagaaatttatagctcgagcaaaagcatatcatggttcaactcttatttctgccagtctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="9856" stop="12093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10156" g_stop="10195" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10196" i_stop="10277" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10278" g_stop="10350" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="113" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10351" i_stop="11001" i_length="651">
            <donor d_prob="0.586" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11002" g_stop="11099" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="211" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113">
            <donor d_prob="0.584" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11305" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="304" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11597" g_stop="11670" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="378" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11758" g_stop="11793" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="414" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E200051" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10156" e_stop="10195"/>
          <exon e_start="10278" e_stop="10350"/>
          <exon e_start="11002" e_stop="11099"/>
          <exon e_start="11213" e_stop="11305"/>
          <exon e_start="11597" e_stop="11670"/>
          <exon e_start="11758" e_stop="11793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTACTGATGTTGATCCTTTGATTATAGAGAAGTCTGAGGTTAGATTTATGTCTAGTTTTGCTGTCTAACTTGAGAGAACTTTATATATCTTTCGTGATTAACTTTTACATTTTGACATAGGGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAGGTACTTTCGATCCCTTTTATTCAGTCTTTGGCGTACTAATTCTAGCTCCAAGTATATTAACATGCATATGTCTTTCATGTATGTTTTTTTAGTCTGGTTAACATCAACAGTCACACATTGACACACTTAAGTGTTCTGCCATGTCAGATGTTTTTCTTTCACAATTTAACTGCATAATTCTTTTCGGTAATGACAATAAGTATTTGCGTCATGATTATAACATCCAAACAATTTACTTTAAAAATGAAAGTTCAGTCCATTGATGAAAACGTTGTGTATTTTCATTTTATTAATAATCAATGTCTGCTATGTTATCCTGATGTGTTGCATTTGAAATGTGTTGAAGACTAACAACTTGAACCATATATTGCAGTATTTCCATCGATGAGAACTTGTAGAATTGTTTTGATCTACTGCTGAATGTCTCCATGTTGAACTGTGACAGTCTANTGCATGGTCAATAAACTGGAGACAGGCCTTAGAGCGGCCTTTAAAGTTTTATTTATGTGATTGCTCAAATATACAGAACAGAACACTTTTAAACCTAGACAATAGCTAATTTCTGACAGCTGTGGAACTTTGCAATGAGTTTTATTTATGATGTAATTGGAGCACATGTACAATGCTTTACCAACTTAAATATTCTTGTANGGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTGGTATGACAAAAACTTTGCAGTGTCTTTACATGAAAAGGAAAATTAAGTGATGCCTAAATTTGGGTTTTTAAGTTTTTCTTGGAACTCATGTTGATTGCATTTTGAAAATACAGGATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAGGTTTTGCTTATTGCCTTCAAACACTTGATTATATAATTAGATCTCAGTTCTTTTCTTTAAACACTTGATAATTCATCAGAAGAACATCGTTTTTGGGATAGTGAAAGAGTGGGACATTATAATTGTTTTGAAAATTGTAAATTTATTCTGTTAGGATATGAAATGAATACAGTAGATACTTGAATTTTTTTAAATTTTTTTTGTATAGAAGTTTGATAAAAATAGCAGGAGATTATGTGAAGAAGTTTATGAGTATAATTTGTAACTTTTTCCCTTATACTTCAAATGTAGGTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGCGTAATTTGTGAATCTCTATCTATTTTTTTTCTTTTGGTTTCCTTTTTCCTTAGTCTTACTAATGTTTTTGTTCATTCATTGTAACAGATATCATGGTTCAACTCTTATTTCTGCCAGTCTCAC</genome_strand>
        <mrna_strand>AAGTACTGATGTTGATCCTTTGATTATAGAGAAGTCTGAG..................................................................................GGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTG.................................................................................................................GATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG...................................................................................................................................................................................................................................................................................................GTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC.......................................................................................ATATCATGGTTCAACTCTTATTTCTGCCAGTCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208893" ref_strand="+" ref_description="SGN-E208893 [cLEC-51-N23]">
      <seq>agtctgagggatcccatgtctatgacatgcaagggaggaggtatattgatactctagctggtttgtggtgcacagcactaggggggaacgagcctcgcctggttgatgctgccactaagcaattaaacacattgccgttttaccattcattttggaaccgtccaacaaaaccttctttggatctagcgaaggagcttctagatatgttcactgcaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="9971" stop="11555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10188" g_stop="10195" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10196" i_stop="10277" i_length="82">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10278" g_stop="10350" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="81" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10351" i_stop="11001" i_length="651">
            <donor d_prob="0.586" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11002" g_stop="11099" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="179" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113">
            <donor d_prob="0.584" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11255" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="222" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E208893" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10188" e_stop="10195"/>
          <exon e_start="10278" e_stop="10350"/>
          <exon e_start="11002" e_stop="11099"/>
          <exon e_start="11213" e_stop="11255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTGAGGTTAGATTTATGTCTAGTTTTGCTGTCTAACTTGAGAGAACTTTATATATCTTTCGTGATTAACTTTTACATTTTGACATAGGGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAGGTACTTTCGATCCCTTTTATTCAGTCTTTGGCGTACTAATTCTAGCTCCAAGTATATTAACATGCATATGTCTTTCATGTATGTTTTTTTAGTCTGGTTAACATCAACAGTCACACATTGACACACTTAAGTGTTCTGCCATGTCAGATGTTTTTCTTTCACAATTTAACTGCATAATTCTTTTCGGTAATGACAATAAGTATTTGCGTCATGATTATAACATCCAAACAATTTACTTTAAAAATGAAAGTTCAGTCCATTGATGAAAACGTTGTGTATTTTCATTTTATTAATAATCAATGTCTGCTATGTTATCCTGATGTGTTGCATTTGAAATGTGTTGAAGACTAACAACTTGAACCATATATTGCAGTATTTCCATCGATGAGAACTTGTAGAATTGTTTTGATCTACTGCTGAATGTCTCCATGTTGAACTGTGACAGTCTANTGCATGGTCAATAAACTGGAGACAGGCCTTAGAGCGGCCTTTAAAGTTTTATTTATGTGATTGCTCAAATATACAGAACAGAACACTTTTAAACCTAGACAATAGCTAATTTCTGACAGCTGTGGAACTTTGCAATGAGTTTTATTTATGATGTAATTGGAGCACATGTACAATGCTTTACCAACTTAAATATTCTTGTANGGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTGGTATGACAAAAACTTTGCAGTGTCTTTACATGAAAAGGAAAATTAAGTGATGCCTAAATTTGGGTTTTTAAGTTTTTCTTGGAACTCATGTTGATTGCATTTTGAAAATACAGGATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAA</genome_strand>
        <mrna_strand>AGTCTGAG..................................................................................GGATCCCATGTCTATGACATGCAAGGGAGGAGGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTCCAACAAAACCTTCTTTG.................................................................................................................GATCTAGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257409" ref_strand="+" ref_description="SGN-E257409 [cLEG-45-K6]">
      <seq>ggatcccatgtctatgacatgcaagggaggaagtatattgatactctagctggtttgtggtgcacagcactaggggggaacgagcctcgcctggttgatgctgccactaagcaattaaacacattgccgttttaccattcattttggaaccgtacaacaaaaccttctttggatcttgcgaaggagcttctagatatgttcactgcaaagaaaatggcaaaagcttttttcaccaatagtggatcagaagccaatgatacccaggtgaagctggtctggtattataacaatgctcttggaaggccaaacaaaaagaaatttatagctcgagcaaaagcatatcatggttcaactcttatttctgccagtctcactggccttcctgcattacatcaaaattttgatcttcctgctccatttgttcttcacaccgactgtcctcattattggcgttatcatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="9978" stop="12270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10278" g_stop="10350" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10351" i_stop="11001" i_length="651">
            <donor d_prob="0.586" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11002" g_stop="11099" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="171" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113">
            <donor d_prob="0.584" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11305" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="264" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11597" g_stop="11670" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="338" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11758" g_stop="11796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="377" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11886" g_stop="11970" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="462" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E257409" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10278" e_stop="10350"/>
          <exon e_start="11002" e_stop="11099"/>
          <exon e_start="11213" e_stop="11305"/>
          <exon e_start="11597" e_stop="11670"/>
          <exon e_start="11758" e_stop="11796"/>
          <exon e_start="11886" e_stop="11970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAGGTACTTTCGATCCCTTTTATTCAGTCTTTGGCGTACTAATTCTAGCTCCAAGTATATTAACATGCATATGTCTTTCATGTATGTTTTTTTAGTCTGGTTAACATCAACAGTCACACATTGACACACTTAAGTGTTCTGCCATGTCAGATGTTTTTCTTTCACAATTTAACTGCATAATTCTTTTCGGTAATGACAATAAGTATTTGCGTCATGATTATAACATCCAAACAATTTACTTTAAAAATGAAAGTTCAGTCCATTGATGAAAACGTTGTGTATTTTCATTTTATTAATAATCAATGTCTGCTATGTTATCCTGATGTGTTGCATTTGAAATGTGTTGAAGACTAACAACTTGAACCATATATTGCAGTATTTCCATCGATGAGAACTTGTAGAATTGTTTTGATCTACTGCTGAATGTCTCCATGTTGAACTGTGACAGTCTANTGCATGGTCAATAAACTGGAGACAGGCCTTAGAGCGGCCTTTAAAGTTTTATTTATGTGATTGCTCAAATATACAGAACAGAACACTTTTAAACCTAGACAATAGCTAATTTCTGACAGCTGTGGAACTTTGCAATGAGTTTTATTTATGATGTAATTGGAGCACATGTACAATGCTTTACCAACTTAAATATTCTTGTANGGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTGGTATGACAAAAACTTTGCAGTGTCTTTACATGAAAAGGAAAATTAAGTGATGCCTAAATTTGGGTTTTTAAGTTTTTCTTGGAACTCATGTTGATTGCATTTTGAAAATACAGGATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAGGTTTTGCTTATTGCCTTCAAACACTTGATTATATAATTAGATCTCAGTTCTTTTCTTTAAACACTTGATAATTCATCAGAAGAACATCGTTTTTGGGATAGTGAAAGAGTGGGACATTATAATTGTTTTGAAAATTGTAAATTTATTCTGTTAGGATATGAAATGAATACAGTAGATACTTGAATTTTTTTAAATTTTTTTTGTATAGAAGTTTGATAAAAATAGCAGGAGATTATGTGAAGAAGTTTATGAGTATAATTTGTAACTTTTTCCCTTATACTTCAAATGTAGGTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGCGTAATTTGTGAATCTCTATCTATTTTTTTTCTTTTGGTTTCCTTTTTCCTTAGTCTTACTAATGTTTTTGTTCATTCATTGTAACAGATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGGGTAATATAATAAAACATCATTTGAAATCAAAATCACTGAGATTCATTATTATGCTTCAAGTATCAGTTTTCTAATACTTTCTTTTGTAGCCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTG</genome_strand>
        <mrna_strand>GGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTG.................................................................................................................GATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG...................................................................................................................................................................................................................................................................................................GTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC.......................................................................................ATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGG.........................................................................................CCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263960" ref_strand="+" ref_description="SGN-E263960 [cLEG-64-K16]">
      <seq>gatcccatgactatgacatgcaagggaggaagtatattgatactctagctggtttgcggtgcacagcactaggggggaacgagcctcgcctggctgatgctgccactaagcaattaaacacattgccggtttaccattcattttggaaccgtacaacaaaaccttctttggatcttgccaaggagcttctagatatgttcactgcaaagaaaatggcaaaagcttttttcaccaatactggatcctaagccaatgatacccacgtgaagctggtctggcattataacaatgctcttggaaggccaaacaaaaataaatttatagctcgagcaaaagcatatcatggctcaactcttatgtctggcagtctcactggccttcctgcattacatcaaaattttgatcttcctgctccatttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="9979" stop="12231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10279" g_stop="10350" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10351" i_stop="11001" i_length="651">
            <donor d_prob="0.586" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11002" g_stop="11099" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="170" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113">
            <donor d_prob="0.584" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11305" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="263" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11597" g_stop="11670" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="337" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11758" g_stop="11796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="376" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11886" g_stop="11931" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="422" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E263960" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10279" e_stop="10350"/>
          <exon e_start="11002" e_stop="11099"/>
          <exon e_start="11213" e_stop="11305"/>
          <exon e_start="11597" e_stop="11670"/>
          <exon e_start="11758" e_stop="11796"/>
          <exon e_start="11886" e_stop="11931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAGGTACTTTCGATCCCTTTTATTCAGTCTTTGGCGTACTAATTCTAGCTCCAAGTATATTAACATGCATATGTCTTTCATGTATGTTTTTTTAGTCTGGTTAACATCAACAGTCACACATTGACACACTTAAGTGTTCTGCCATGTCAGATGTTTTTCTTTCACAATTTAACTGCATAATTCTTTTCGGTAATGACAATAAGTATTTGCGTCATGATTATAACATCCAAACAATTTACTTTAAAAATGAAAGTTCAGTCCATTGATGAAAACGTTGTGTATTTTCATTTTATTAATAATCAATGTCTGCTATGTTATCCTGATGTGTTGCATTTGAAATGTGTTGAAGACTAACAACTTGAACCATATATTGCAGTATTTCCATCGATGAGAACTTGTAGAATTGTTTTGATCTACTGCTGAATGTCTCCATGTTGAACTGTGACAGTCTANTGCATGGTCAATAAACTGGAGACAGGCCTTAGAGCGGCCTTTAAAGTTTTATTTATGTGATTGCTCAAATATACAGAACAGAACACTTTTAAACCTAGACAATAGCTAATTTCTGACAGCTGTGGAACTTTGCAATGAGTTTTATTTATGATGTAATTGGAGCACATGTACAATGCTTTACCAACTTAAATATTCTTGTANGGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTGGTATGACAAAAACTTTGCAGTGTCTTTACATGAAAAGGAAAATTAAGTGATGCCTAAATTTGGGTTTTTAAGTTTTTCTTGGAACTCATGTTGATTGCATTTTGAAAATACAGGATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAGGTTTTGCTTATTGCCTTCAAACACTTGATTATATAATTAGATCTCAGTTCTTTTCTTTAAACACTTGATAATTCATCAGAAGAACATCGTTTTTGGGATAGTGAAAGAGTGGGACATTATAATTGTTTTGAAAATTGTAAATTTATTCTGTTAGGATATGAAATGAATACAGTAGATACTTGAATTTTTTTAAATTTTTTTTGTATAGAAGTTTGATAAAAATAGCAGGAGATTATGTGAAGAAGTTTATGAGTATAATTTGTAACTTTTTCCCTTATACTTCAAATGTAGGTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGCGTAATTTGTGAATCTCTATCTATTTTTTTTCTTTTGGTTTCCTTTTTCCTTAGTCTTACTAATGTTTTTGTTCATTCATTGTAACAGATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGGGTAATATAATAAAACATCATTTGAAATCAAAATCACTGAGATTCATTATTATGCTTCAAGTATCAGTTTTCTAATACTTTCTTTTGTAGCCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTT</genome_strand>
        <mrna_strand>GATCCCATGACTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGCGGTGCACAGCACTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAACGAGCCTCGCCTGGCTGATGCTGCCACTAAGCAATTAAACACATTGCCGGTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTG.................................................................................................................GATCTTGCCAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATACTGGATCCTAAGCCAATGATACCCAC...................................................................................................................................................................................................................................................................................................GTGAAGCTGGTCTGGCATTATAACAATGCTCTTGGAAGGCCAAACAAAAATAAATTTATAGCTCGAGCAAAAGC.......................................................................................ATATCATGGCTCAACTCTTATGTCTGGCAGTCTCACTGG.........................................................................................CCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212085" ref_strand="+" ref_description="SGN-E212085 [cLEC-75-K1]">
      <seq>tgacatgcaagggaggaagtatattgatactctagctggtttgtggtgcacagcactaggggggaacgagcctcgcctggttgatgctgccactaagcaattaaacacattgccgttttaccattcattttggaaccgtacaacaaaaccttctttggatcttgcgaaggagcttctagatatgttcactgcaaagaaaatggcaaaagctttttttcaccaatagtggatcagaagccaatgatacccaggtgaagctggtctggtattataacaatgctcttggaaggccaaacaaaaagaaatttatagctcgagcaaaagcatatcatggttcaactcttatttctgccagtctcactggccttcctgcattacatcaaaattttgatcttcctgctccatttgttcttcacaccgactgtcctcattattggcgttatcatctgccaggtgagacagaggaggagttctccaccaggttggctaaaaatttagaagatcttatcctcaaagaggggcctgaaacaatagctgcttttattgctgaaccagtcatgggggcaggaggtgtcatacctcctccagctacctattttgataagatccaagctgtagtgaaagaatatgacattcttttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="9992" stop="19805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10292" g_stop="10350" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10351" i_stop="11001" i_length="651">
            <donor d_prob="0.586" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11002" g_stop="11099" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="157" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113">
            <donor d_prob="0.584" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11305" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="251" r_length="94" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11597" g_stop="11670" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="325" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11758" g_stop="11796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="364" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11886" g_stop="11974" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="453" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12059" g_stop="12135" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="530" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="12221" g_stop="12295" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="605" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="12296" i_stop="12757" i_length="462">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="12758" g_stop="12795" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="643" r_length="38" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E212085" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10292" e_stop="10350"/>
          <exon e_start="11002" e_stop="11099"/>
          <exon e_start="11213" e_stop="11305"/>
          <exon e_start="11597" e_stop="11670"/>
          <exon e_start="11758" e_stop="11796"/>
          <exon e_start="11886" e_stop="11974"/>
          <exon e_start="12059" e_stop="12135"/>
          <exon e_start="12221" e_stop="12295"/>
          <exon e_start="12758" e_stop="12795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAGGTACTTTCGATCCCTTTTATTCAGTCTTTGGCGTACTAATTCTAGCTCCAAGTATATTAACATGCATATGTCTTTCATGTATGTTTTTTTAGTCTGGTTAACATCAACAGTCACACATTGACACACTTAAGTGTTCTGCCATGTCAGATGTTTTTCTTTCACAATTTAACTGCATAATTCTTTTCGGTAATGACAATAAGTATTTGCGTCATGATTATAACATCCAAACAATTTACTTTAAAAATGAAAGTTCAGTCCATTGATGAAAACGTTGTGTATTTTCATTTTATTAATAATCAATGTCTGCTATGTTATCCTGATGTGTTGCATTTGAAATGTGTTGAAGACTAACAACTTGAACCATATATTGCAGTATTTCCATCGATGAGAACTTGTAGAATTGTTTTGATCTACTGCTGAATGTCTCCATGTTGAACTGTGACAGTCTANTGCATGGTCAATAAACTGGAGACAGGCCTTAGAGCGGCCTTTAAAGTTTTATTTATGTGATTGCTCAAATATACAGAACAGAACACTTTTAAACCTAGACAATAGCTAATTTCTGACAGCTGTGGAACTTTGCAATGAGTTTTATTTATGATGTAATTGGAGCACATGTACAATGCTTTACCAACTTAAATATTCTTGTANGGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTGGTATGACAAAAACTTTGCAGTGTCTTTACATGAAAAGGAAAATTAAGTGATGCCTAAATTTGGGTTTTTAAGTTTTTCTTGGAACTCATGTTGATTGCATTTTGAAAATACAGGATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGC-TTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAGGTTTTGCTTATTGCCTTCAAACACTTGATTATATAATTAGATCTCAGTTCTTTTCTTTAAACACTTGATAATTCATCAGAAGAACATCGTTTTTGGGATAGTGAAAGAGTGGGACATTATAATTGTTTTGAAAATTGTAAATTTATTCTGTTAGGATATGAAATGAATACAGTAGATACTTGAATTTTTTTAAATTTTTTTTGTATAGAAGTTTGATAAAAATAGCAGGAGATTATGTGAAGAAGTTTATGAGTATAATTTGTAACTTTTTCCCTTATACTTCAAATGTAGGTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGCGTAATTTGTGAATCTCTATCTATTTTTTTTCTTTTGGTTTCCTTTTTCCTTAGTCTTACTAATGTTTTTGTTCATTCATTGTAACAGATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGGGTAATATAATAAAACATCATTTGAAATCAAAATCACTGAGATTCATTATTATGCTTCAAGTATCAGTTTTCTAATACTTTCTTTTGTAGCCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAGGTTGTTACTTATTCTTAATGACTCTTACTTTTCTCCTCTTCCTATGGTGTAATAAACCATTTTATGTTGAAATGTATATATCAGGTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACAGTAACTTCCATCAACTTTTACTCTTGCTACTCAGTTTGTATATTGAGGGTGATTTATTGCTGATTAATTTGCTTTTTCACCTCAGATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAGGTAGTTTTCTTTGCGTTTTTGTCTGTTCTTTTTATTCCAGAAGGAGGAAGCTATATCACTTTTGCATTACTACTTAGAATGCTGCATGCAATGCTCAATCTAGGATGTAAGAGTTCGTTCTGTAGTTTTGGTGCCAAAGAATGAAGGCAATCAGCTAAGTATTTATTTAAGAAACTCCGAAGTTTGTGCTTACTGTCATTGTCAAAGAAGGGTGTAACTGGTAACCTCTTTCTGTCTGTAAAACCCAAGCATATTTGCATTTGGTTTTACCATGAGATAGAATGAAGATCATCAGCCATTGAGAAATTTGTGGGTAGAATGAGGATCATCAGCCACAAGATATGTGCAATAACAAGTCCTTTTCTTTTATTTCTGGCAGTTTTTGCAGTTATCTATCTTTAGTTCCTTCAAATTATTCTTATATACATAACTAAAACAACGATTTCTCCTTTTCATTTATAAATTCAANCTGTATTGAAAAAATATGACATCCTTTTCAT</genome_strand>
        <mrna_strand>TGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTG.................................................................................................................GATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG...................................................................................................................................................................................................................................................................................................GTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC.......................................................................................ATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGG.........................................................................................CCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAG....................................................................................GTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACA.....................................................................................ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCTGTAGTGAAAGAATATGACATTCTTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205426" ref_strand="+" ref_description="SGN-E205426 [cLEC-28-J13]">
      <seq>acagcactaggggggaacgagcctcgcctggttgatgctgccactaagcaattaaacacattgccgttttaccattcattttggaaccgtacaacaaaaccttctttggatcttgcgaaggagcttctagatatgttcactgcaaagaaaatggcaaaagcttttttcaccaatagtggatcagaagccaatgatacccaggtgaagctggtctggtattataacaatgctcttggaaggccaaacaaaaagaaatttatagctcgagcaaaagcatatcatggttcaactcttatttctgccagtctcactggccttcctgcattacatcaaaattttgatcttcctgctccatttgttcttcacaccgactgtcctcattattggcgttatcatctgccaggtgagacagaggaggagttctccaccaggttggctaaaaatttagaagatcttatcctcaaagaggggcctgaaacaatagctgcttttattgctgaaccagtcatgggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="10699" stop="12555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10992" g_stop="11099" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113">
            <donor d_prob="0.584" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11305" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="201" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11597" g_stop="11670" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="275" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11758" g_stop="11796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="314" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11886" g_stop="11974" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="403" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12059" g_stop="12135" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="480" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12221" g_stop="12255" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="515" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E205426" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10992" e_stop="11099"/>
          <exon e_start="11213" e_stop="11305"/>
          <exon e_start="11597" e_stop="11670"/>
          <exon e_start="11758" e_stop="11796"/>
          <exon e_start="11886" e_stop="11974"/>
          <exon e_start="12059" e_stop="12135"/>
          <exon e_start="12221" e_stop="12255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTGTANGGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTGGTATGACAAAAACTTTGCAGTGTCTTTACATGAAAAGGAAAATTAAGTGATGCCTAAATTTGGGTTTTTAAGTTTTTCTTGGAACTCATGTTGATTGCATTTTGAAAATACAGGATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAGGTTTTGCTTATTGCCTTCAAACACTTGATTATATAATTAGATCTCAGTTCTTTTCTTTAAACACTTGATAATTCATCAGAAGAACATCGTTTTTGGGATAGTGAAAGAGTGGGACATTATAATTGTTTTGAAAATTGTAAATTTATTCTGTTAGGATATGAAATGAATACAGTAGATACTTGAATTTTTTTAAATTTTTTTTGTATAGAAGTTTGATAAAAATAGCAGGAGATTATGTGAAGAAGTTTATGAGTATAATTTGTAACTTTTTCCCTTATACTTCAAATGTAGGTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGCGTAATTTGTGAATCTCTATCTATTTTTTTTCTTTTGGTTTCCTTTTTCCTTAGTCTTACTAATGTTTTTGTTCATTCATTGTAACAGATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGGGTAATATAATAAAACATCATTTGAAATCAAAATCACTGAGATTCATTATTATGCTTCAAGTATCAGTTTTCTAATACTTTCTTTTGTAGCCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAGGTTGTTACTTATTCTTAATGACTCTTACTTTTCTCCTCTTCCTATGGTGTAATAAACCATTTTATGTTGAAATGTATATATCAGGTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACAGTAACTTCCATCAACTTTTACTCTTGCTACTCAGTTTGTATATTGAGGGTGATTTATTGCTGATTAATTTGCTTTTTCACCTCAGATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGC</genome_strand>
        <mrna_strand>ACAGCACTAGGGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTG.................................................................................................................GATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG...................................................................................................................................................................................................................................................................................................GTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC.......................................................................................ATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGG.........................................................................................CCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAG....................................................................................GTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACA.....................................................................................ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259869" ref_strand="+" ref_description="SGN-E259869 [cLEG-51-F24]">
      <seq>cactaggggggaacgagcctcgcctggttgatgctgccactaagcaattaaacacattgccgttttaccattcattttggaaccgtacaacaaaaccttctttggatcttgcgaaggagcttctagatatgttcactgcaaagaaaatggcaaaagcttttttcaccaatagtggatcagaagccaatgatacccaggtgaagctggtctggtattataacaatgctcttggaaggccaaacaaaaagaaatttatagctcgagcaaaagcatatcatggttcaactcttatttctgccagtctcactggccttcctgcattacatcaaaattttgatcttcctgctccatttgttcttcacaccgactgtcctcattattggcgttatcatctgccaggtgagacagaggaggagttctccaccaggttggctaaaaatttagaagatcttatcctcaaagaggggcctgaaacaatagctgcttttattgctgaaccagtcatgggggcaggaggtgtcatacctcctccagctacctattttgataagatccaagctgtagtgaagaaatatgacattcttttcattgcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="10699" stop="19811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10996" g_stop="11099" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113">
            <donor d_prob="0.584" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11305" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="197" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11597" g_stop="11670" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="271" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11758" g_stop="11796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="310" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11886" g_stop="11974" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="399" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12059" g_stop="12135" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="476" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12221" g_stop="12295" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="551" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="12296" i_stop="12757" i_length="462">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="12758" g_stop="12801" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="595" r_length="44" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E259869" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10996" e_stop="11099"/>
          <exon e_start="11213" e_stop="11305"/>
          <exon e_start="11597" e_stop="11670"/>
          <exon e_start="11758" e_stop="11796"/>
          <exon e_start="11886" e_stop="11974"/>
          <exon e_start="12059" e_stop="12135"/>
          <exon e_start="12221" e_stop="12295"/>
          <exon e_start="12758" e_stop="12801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTANGGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTGGTATGACAAAAACTTTGCAGTGTCTTTACATGAAAAGGAAAATTAAGTGATGCCTAAATTTGGGTTTTTAAGTTTTTCTTGGAACTCATGTTGATTGCATTTTGAAAATACAGGATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAGGTTTTGCTTATTGCCTTCAAACACTTGATTATATAATTAGATCTCAGTTCTTTTCTTTAAACACTTGATAATTCATCAGAAGAACATCGTTTTTGGGATAGTGAAAGAGTGGGACATTATAATTGTTTTGAAAATTGTAAATTTATTCTGTTAGGATATGAAATGAATACAGTAGATACTTGAATTTTTTTAAATTTTTTTTGTATAGAAGTTTGATAAAAATAGCAGGAGATTATGTGAAGAAGTTTATGAGTATAATTTGTAACTTTTTCCCTTATACTTCAAATGTAGGTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGCGTAATTTGTGAATCTCTATCTATTTTTTTTCTTTTGGTTTCCTTTTTCCTTAGTCTTACTAATGTTTTTGTTCATTCATTGTAACAGATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGGGTAATATAATAAAACATCATTTGAAATCAAAATCACTGAGATTCATTATTATGCTTCAAGTATCAGTTTTCTAATACTTTCTTTTGTAGCCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAGGTTGTTACTTATTCTTAATGACTCTTACTTTTCTCCTCTTCCTATGGTGTAATAAACCATTTTATGTTGAAATGTATATATCAGGTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACAGTAACTTCCATCAACTTTTACTCTTGCTACTCAGTTTGTATATTGAGGGTGATTTATTGCTGATTAATTTGCTTTTTCACCTCAGATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAGGTAGTTTTCTTTGCGTTTTTGTCTGTTCTTTTTATTCCAGAAGGAGGAAGCTATATCACTTTTGCATTACTACTTAGAATGCTGCATGCAATGCTCAATCTAGGATGTAAGAGTTCGTTCTGTAGTTTTGGTGCCAAAGAATGAAGGCAATCAGCTAAGTATTTATTTAAGAAACTCCGAAGTTTGTGCTTACTGTCATTGTCAAAGAAGGGTGTAACTGGTAACCTCTTTCTGTCTGTAAAACCCAAGCATATTTGCATTTGGTTTTACCATGAGATAGAATGAAGATCATCAGCCATTGAGAAATTTGTGGGTAGAATGAGGATCATCAGCCACAAGATATGTGCAATAACAAGTCCTTTTCTTTTATTTCTGGCAGTTTTTGCAGTTATCTATCTTTAGTTCCTTCAAATTATTCTTATATACATAACTAAAACAACGATTTCTCCTTTTCATTTATAAATTCAANCTGTATTGAAAAAATATGACATCCTTTTCATTGCGGA</genome_strand>
        <mrna_strand>CACTAGGGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTG.................................................................................................................GATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG...................................................................................................................................................................................................................................................................................................GTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC.......................................................................................ATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGG.........................................................................................CCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAG....................................................................................GTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACA.....................................................................................ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCTGTAGTGAAGAAATATGACATTCTTTTCATTGCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258284" ref_strand="+" ref_description="SGN-E258284 [cLEG-49-A14]">
      <seq>cactaggggggaacgagcctcgcctggttgatgctgccactaagcaattaaacacattgccgttttaccattcattttggaaccgtacaacaaaaccttctttggatcttgcgaaggagcttctagatatgttcactgcaaagaaaatggcaaaagcttttttcaccaatagtggatcagaagccaatgatacccaggtgaagctggtctggtattataacaatgctcttggaaggccaaacaaaaagaaatttatagctcgagcaaaagcatatcatggttcaactcttatttctgccagtctcactgggcttcctgcattacatcaaaattttgatcttcctgctccatttgttcttcacaccgactgtgctcattattggcgttatcatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="10699" stop="12271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10996" g_stop="11099" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113">
            <donor d_prob="0.584" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11305" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="197" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11597" g_stop="11670" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="271" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11758" g_stop="11796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="310" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11886" g_stop="11971" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="396" r_length="86" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E258284" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10996" e_stop="11099"/>
          <exon e_start="11213" e_stop="11305"/>
          <exon e_start="11597" e_stop="11670"/>
          <exon e_start="11758" e_stop="11796"/>
          <exon e_start="11886" e_stop="11971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTANGGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTGGTATGACAAAAACTTTGCAGTGTCTTTACATGAAAAGGAAAATTAAGTGATGCCTAAATTTGGGTTTTTAAGTTTTTCTTGGAACTCATGTTGATTGCATTTTGAAAATACAGGATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAGGTTTTGCTTATTGCCTTCAAACACTTGATTATATAATTAGATCTCAGTTCTTTTCTTTAAACACTTGATAATTCATCAGAAGAACATCGTTTTTGGGATAGTGAAAGAGTGGGACATTATAATTGTTTTGAAAATTGTAAATTTATTCTGTTAGGATATGAAATGAATACAGTAGATACTTGAATTTTTTTAAATTTTTTTTGTATAGAAGTTTGATAAAAATAGCAGGAGATTATGTGAAGAAGTTTATGAGTATAATTTGTAACTTTTTCCCTTATACTTCAAATGTAGGTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGCGTAATTTGTGAATCTCTATCTATTTTTTTTCTTTTGGTTTCCTTTTTCCTTAGTCTTACTAATGTTTTTGTTCATTCATTGTAACAGATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGGGTAATATAATAAAACATCATTTGAAATCAAAATCACTGAGATTCATTATTATGCTTCAAGTATCAGTTTTCTAATACTTTCTTTTGTAGCCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGC</genome_strand>
        <mrna_strand>CACTAGGGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTG.................................................................................................................GATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG...................................................................................................................................................................................................................................................................................................GTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC.......................................................................................ATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGG.........................................................................................GCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTGCTCATTATTGGCGTTATCATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204134" ref_strand="+" ref_description="SGN-E204134 [cLEC-27-O21]">
      <seq>cgtattaccattcattttggaaccgtacaacaaaaccttctttggatcttgcgaaggagcttctagatatgttcactgcaaagaaaatggcaaaagcttttttcaccaatagtggatcagaagccaatgatacccaggtgaagctggtctggtattataacaatgctcttggaaggccaaacaaaaagaaatttatagctcgagcaaaagcatatcatggttcaactcttatttctgccagtctcactggccttcctgcattacatcaaaattttgatcttcctgctccattcgttcttcacaccgactgacctcattattggcgttatcatctgccaagtgagacagaggaggagttctccaccaggttggctaaaaatttagaagatcttatcctcaaagaggggcctgaaacaatagctgcttttattgctgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="10756" stop="12543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11056" g_stop="11099" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113">
            <donor d_prob="0.584" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11305" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="137" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11597" g_stop="11670" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="211" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11758" g_stop="11796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="250" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11886" g_stop="11974" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="339" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12059" g_stop="12135" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="416" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12221" g_stop="12243" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="439" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E204134" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11056" e_stop="11099"/>
          <exon e_start="11213" e_stop="11305"/>
          <exon e_start="11597" e_stop="11670"/>
          <exon e_start="11758" e_stop="11796"/>
          <exon e_start="11886" e_stop="11974"/>
          <exon e_start="12059" e_stop="12135"/>
          <exon e_start="12221" e_stop="12243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTGGTATGACAAAAACTTTGCAGTGTCTTTACATGAAAAGGAAAATTAAGTGATGCCTAAATTTGGGTTTTTAAGTTTTTCTTGGAACTCATGTTGATTGCATTTTGAAAATACAGGATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAGGTTTTGCTTATTGCCTTCAAACACTTGATTATATAATTAGATCTCAGTTCTTTTCTTTAAACACTTGATAATTCATCAGAAGAACATCGTTTTTGGGATAGTGAAAGAGTGGGACATTATAATTGTTTTGAAAATTGTAAATTTATTCTGTTAGGATATGAAATGAATACAGTAGATACTTGAATTTTTTTAAATTTTTTTTGTATAGAAGTTTGATAAAAATAGCAGGAGATTATGTGAAGAAGTTTATGAGTATAATTTGTAACTTTTTCCCTTATACTTCAAATGTAGGTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGCGTAATTTGTGAATCTCTATCTATTTTTTTTCTTTTGGTTTCCTTTTTCCTTAGTCTTACTAATGTTTTTGTTCATTCATTGTAACAGATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGGGTAATATAATAAAACATCATTTGAAATCAAAATCACTGAGATTCATTATTATGCTTCAAGTATCAGTTTTCTAATACTTTCTTTTGTAGCCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAGGTTGTTACTTATTCTTAATGACTCTTACTTTTCTCCTCTTCCTATGGTGTAATAAACCATTTTATGTTGAAATGTATATATCAGGTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACAGTAACTTCCATCAACTTTTACTCTTGCTACTCAGTTTGTATATTGAGGGTGATTTATTGCTGATTAATTTGCTTTTTCACCTCAGATAGCTGCTTTTATTGCTGAACC</genome_strand>
        <mrna_strand>CGTATTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTG.................................................................................................................GATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG...................................................................................................................................................................................................................................................................................................GTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC.......................................................................................ATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGG.........................................................................................CCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTCGTTCTTCACACCGACTGACCTCATTATTGGCGTTATCATCTGCCAA....................................................................................GTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACA.....................................................................................ATAGCTGCTTTTATTGCTGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257856" ref_strand="+" ref_description="SGN-E257856 [cLEG-39-F5]">
      <seq>acaaaaccttctttggatcttgcgaaggagcttctagatatgttcactgcaaagaaaatggcaaaagcttttttcaccaatagtggatcagaagccaatgatacccaggtgaagctggtctggtattataacaatgctcttggaaggccaaacaaaaagaaatttatagctcgagcaaaagcatatcatggttcaactcttatttctgccagtctcactggccttcctgcattacatcaaaattttgatcttcctgctccatttgttcttcacaccgactgtcctcattattggcgttatcatctgccaggtgagacagaggaggagttctccaccaggttggctaaaaatttagaagatcttatcctcaaagaggggcctgaaacaatagctgcttttattgctgaaccagtcatgggggcaggaggtgtcatacctcctccagctacctattttgataagatccaagctgtagtgaagaaatatgacattcttttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="10912" stop="19804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11085" g_stop="11099" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113">
            <donor d_prob="0.584" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11305" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="108" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11597" g_stop="11670" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="182" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11758" g_stop="11796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="221" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11886" g_stop="11974" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="310" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12059" g_stop="12135" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="387" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12221" g_stop="12295" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="462" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="12296" i_stop="12757" i_length="462">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="12758" g_stop="12794" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="499" r_length="37" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E257856" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11085" e_stop="11099"/>
          <exon e_start="11213" e_stop="11305"/>
          <exon e_start="11597" e_stop="11670"/>
          <exon e_start="11758" e_stop="11796"/>
          <exon e_start="11886" e_stop="11974"/>
          <exon e_start="12059" e_stop="12135"/>
          <exon e_start="12221" e_stop="12295"/>
          <exon e_start="12758" e_stop="12794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACCTTCTTTGGTATGACAAAAACTTTGCAGTGTCTTTACATGAAAAGGAAAATTAAGTGATGCCTAAATTTGGGTTTTTAAGTTTTTCTTGGAACTCATGTTGATTGCATTTTGAAAATACAGGATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAGGTTTTGCTTATTGCCTTCAAACACTTGATTATATAATTAGATCTCAGTTCTTTTCTTTAAACACTTGATAATTCATCAGAAGAACATCGTTTTTGGGATAGTGAAAGAGTGGGACATTATAATTGTTTTGAAAATTGTAAATTTATTCTGTTAGGATATGAAATGAATACAGTAGATACTTGAATTTTTTTAAATTTTTTTTGTATAGAAGTTTGATAAAAATAGCAGGAGATTATGTGAAGAAGTTTATGAGTATAATTTGTAACTTTTTCCCTTATACTTCAAATGTAGGTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGCGTAATTTGTGAATCTCTATCTATTTTTTTTCTTTTGGTTTCCTTTTTCCTTAGTCTTACTAATGTTTTTGTTCATTCATTGTAACAGATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGGGTAATATAATAAAACATCATTTGAAATCAAAATCACTGAGATTCATTATTATGCTTCAAGTATCAGTTTTCTAATACTTTCTTTTGTAGCCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAGGTTGTTACTTATTCTTAATGACTCTTACTTTTCTCCTCTTCCTATGGTGTAATAAACCATTTTATGTTGAAATGTATATATCAGGTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACAGTAACTTCCATCAACTTTTACTCTTGCTACTCAGTTTGTATATTGAGGGTGATTTATTGCTGATTAATTTGCTTTTTCACCTCAGATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAGGTAGTTTTCTTTGCGTTTTTGTCTGTTCTTTTTATTCCAGAAGGAGGAAGCTATATCACTTTTGCATTACTACTTAGAATGCTGCATGCAATGCTCAATCTAGGATGTAAGAGTTCGTTCTGTAGTTTTGGTGCCAAAGAATGAAGGCAATCAGCTAAGTATTTATTTAAGAAACTCCGAAGTTTGTGCTTACTGTCATTGTCAAAGAAGGGTGTAACTGGTAACCTCTTTCTGTCTGTAAAACCCAAGCATATTTGCATTTGGTTTTACCATGAGATAGAATGAAGATCATCAGCCATTGAGAAATTTGTGGGTAGAATGAGGATCATCAGCCACAAGATATGTGCAATAACAAGTCCTTTTCTTTTATTTCTGGCAGTTTTTGCAGTTATCTATCTTTAGTTCCTTCAAATTATTCTTATATACATAACTAAAACAACGATTTCTCCTTTTCATTTATAAATTCAANCTGTATTGAAAAAATATGACATCCTTTTCA</genome_strand>
        <mrna_strand>ACAAAACCTTCTTTG.................................................................................................................GATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG...................................................................................................................................................................................................................................................................................................GTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC.......................................................................................ATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGG.........................................................................................CCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAG....................................................................................GTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACA.....................................................................................ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCTGTAGTGAAGAAATATGACATTCTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260144" ref_strand="+" ref_description="SGN-E260144 [cLEG-52-G16]">
      <seq>accttctttggatcttgcgaaggagcttctagatatgttcactgcaaagaaaatggcaaaagcttttttcaccaatagtggatcagaagccaatgatacccaggtgaagctggtctggtattataacaatgctcttggaaggccaaacaaaaagaaatttatagctcgagcaaaagcatatcatggttcaactcttatttctgccagtctcactggccttcctgcattacatcaaaattttgatcttcctgctccatttgttcttcacaccgactgtcctcattattggcgttatcatctgccaggtgagacagaggaggagttctccaccaagttggctaaaaatttagaagatcttatcctcaaagaggggcctgaaacaatagctgcttttattgctgaaccagtcatgggggcaagaggtgtcatacctcctccagctacctattttgataagatccaagctgtagtgaagaaatatgacattcttttcattgcggatgaaggcatctgtgcctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="10912" stop="19831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11090" g_stop="11099" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113">
            <donor d_prob="0.584" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11305" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="103" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11597" g_stop="11670" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="177" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11758" g_stop="11796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="216" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11886" g_stop="11974" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="305" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12059" g_stop="12135" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="382" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12221" g_stop="12295" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="457" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="12296" i_stop="12757" i_length="462">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="12758" g_stop="12821" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="521" r_length="64" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E260144" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11090" e_stop="11099"/>
          <exon e_start="11213" e_stop="11305"/>
          <exon e_start="11597" e_stop="11670"/>
          <exon e_start="11758" e_stop="11796"/>
          <exon e_start="11886" e_stop="11974"/>
          <exon e_start="12059" e_stop="12135"/>
          <exon e_start="12221" e_stop="12295"/>
          <exon e_start="12758" e_stop="12821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTCTTTGGTATGACAAAAACTTTGCAGTGTCTTTACATGAAAAGGAAAATTAAGTGATGCCTAAATTTGGGTTTTTAAGTTTTTCTTGGAACTCATGTTGATTGCATTTTGAAAATACAGGATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAGGTTTTGCTTATTGCCTTCAAACACTTGATTATATAATTAGATCTCAGTTCTTTTCTTTAAACACTTGATAATTCATCAGAAGAACATCGTTTTTGGGATAGTGAAAGAGTGGGACATTATAATTGTTTTGAAAATTGTAAATTTATTCTGTTAGGATATGAAATGAATACAGTAGATACTTGAATTTTTTTAAATTTTTTTTGTATAGAAGTTTGATAAAAATAGCAGGAGATTATGTGAAGAAGTTTATGAGTATAATTTGTAACTTTTTCCCTTATACTTCAAATGTAGGTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGCGTAATTTGTGAATCTCTATCTATTTTTTTTCTTTTGGTTTCCTTTTTCCTTAGTCTTACTAATGTTTTTGTTCATTCATTGTAACAGATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGGGTAATATAATAAAACATCATTTGAAATCAAAATCACTGAGATTCATTATTATGCTTCAAGTATCAGTTTTCTAATACTTTCTTTTGTAGCCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAGGTTGTTACTTATTCTTAATGACTCTTACTTTTCTCCTCTTCCTATGGTGTAATAAACCATTTTATGTTGAAATGTATATATCAGGTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACAGTAACTTCCATCAACTTTTACTCTTGCTACTCAGTTTGTATATTGAGGGTGATTTATTGCTGATTAATTTGCTTTTTCACCTCAGATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAGGTAGTTTTCTTTGCGTTTTTGTCTGTTCTTTTTATTCCAGAAGGAGGAAGCTATATCACTTTTGCATTACTACTTAGAATGCTGCATGCAATGCTCAATCTAGGATGTAAGAGTTCGTTCTGTAGTTTTGGTGCCAAAGAATGAAGGCAATCAGCTAAGTATTTATTTAAGAAACTCCGAAGTTTGTGCTTACTGTCATTGTCAAAGAAGGGTGTAACTGGTAACCTCTTTCTGTCTGTAAAACCCAAGCATATTTGCATTTGGTTTTACCATGAGATAGAATGAAGATCATCAGCCATTGAGAAATTTGTGGGTAGAATGAGGATCATCAGCCACAAGATATGTGCAATAACAAGTCCTTTTCTTTTATTTCTGGCAGTTTTTGCAGTTATCTATCTTTAGTTCCTTCAAATTATTCTTATATACATAACTAAAACAACGATTTCTCCTTTTCATTTATAAATTCAANCTGTATTGAAAAAATATGACATCCTTTTCATTGCGGATGAAGTCATCTGTGCCTTTG</genome_strand>
        <mrna_strand>ACCTTCTTTG.................................................................................................................GATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG...................................................................................................................................................................................................................................................................................................GTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC.......................................................................................ATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGG.........................................................................................CCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAG....................................................................................GTGAGACAGAGGAGGAGTTCTCCACCAAGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACA.....................................................................................ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAAGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCTGTAGTGAAGAAATATGACATTCTTTTCATTGCGGATGAAGGCATCTGTGCCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264411" ref_strand="+" ref_description="SGN-E264411 [cLEG-67-B7]">
      <seq>accttctttggatcttgcgaaggagcttctagatatgttcactgcaaagaaaatggcaaaagcttttttcaccaatagtggatcagaagccaatgatacccaggtgaagctggtctggtattataacaatgctcttggaaggccaaacaaaaagaaatttatagctcgagcaaaagcatatcatggttcaactcttatttctgccagtctcactggccttcctgcattacatcaaaattttgatcttcctgctccatttgttcttcacaccgactgtcctcattattggcgttatcatctgccaggtgagacagaggaggagttctccaccaggttggctaaaaatttagaagatcttatcctcaaagaggggcctgaaacaatagctgcttttattgctgaaccagtcatgggggcaggaggtgtcatacctcctccagctacctattttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="10912" stop="12592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11090" g_stop="11099" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113">
            <donor d_prob="0.584" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11305" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="103" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11597" g_stop="11670" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="177" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11758" g_stop="11796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="216" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11886" g_stop="11974" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="305" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12059" g_stop="12135" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="382" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12221" g_stop="12292" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="454" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E264411" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11090" e_stop="11099"/>
          <exon e_start="11213" e_stop="11305"/>
          <exon e_start="11597" e_stop="11670"/>
          <exon e_start="11758" e_stop="11796"/>
          <exon e_start="11886" e_stop="11974"/>
          <exon e_start="12059" e_stop="12135"/>
          <exon e_start="12221" e_stop="12292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTCTTTGGTATGACAAAAACTTTGCAGTGTCTTTACATGAAAAGGAAAATTAAGTGATGCCTAAATTTGGGTTTTTAAGTTTTTCTTGGAACTCATGTTGATTGCATTTTGAAAATACAGGATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAGGTTTTGCTTATTGCCTTCAAACACTTGATTATATAATTAGATCTCAGTTCTTTTCTTTAAACACTTGATAATTCATCAGAAGAACATCGTTTTTGGGATAGTGAAAGAGTGGGACATTATAATTGTTTTGAAAATTGTAAATTTATTCTGTTAGGATATGAAATGAATACAGTAGATACTTGAATTTTTTTAAATTTTTTTTGTATAGAAGTTTGATAAAAATAGCAGGAGATTATGTGAAGAAGTTTATGAGTATAATTTGTAACTTTTTCCCTTATACTTCAAATGTAGGTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGCGTAATTTGTGAATCTCTATCTATTTTTTTTCTTTTGGTTTCCTTTTTCCTTAGTCTTACTAATGTTTTTGTTCATTCATTGTAACAGATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGGGTAATATAATAAAACATCATTTGAAATCAAAATCACTGAGATTCATTATTATGCTTCAAGTATCAGTTTTCTAATACTTTCTTTTGTAGCCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAGGTTGTTACTTATTCTTAATGACTCTTACTTTTCTCCTCTTCCTATGGTGTAATAAACCATTTTATGTTGAAATGTATATATCAGGTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACAGTAACTTCCATCAACTTTTACTCTTGCTACTCAGTTTGTATATTGAGGGTGATTTATTGCTGATTAATTTGCTTTTTCACCTCAGATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGAT</genome_strand>
        <mrna_strand>ACCTTCTTTG.................................................................................................................GATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG...................................................................................................................................................................................................................................................................................................GTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC.......................................................................................ATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGG.........................................................................................CCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAG....................................................................................GTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACA.....................................................................................ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252400" ref_strand="+" ref_description="SGN-E252400 [cLEG-12-F13]">
      <seq>aaaatggcaaaagcttttttcaccaatagtggatcagaagccaatgatacccaggtgaagctggtctggtattataacaatgctcttggaaggccaaacaaaaagaaatttatagctcgagcaaaagcatatcatggttcaactcttatttctgccagtctcactggccttcctgcattacatcaaaattttgatcttcctgctccatttgttcttcacaccgactgtcctcattattggcgttatcatctgccaggtgagacagaggaggagttctccaccaggttggctaaaaatttagaagatcttatcctcaaagaggggcctgaaacaatagctgcttttattgctgaaccagtcatgggggcaggaggtgtcatacctcctccagctacctattttgataagatccaagctgtagtgaagaaatatgacattcttttcattgcggatgaggtcatctgtgcctttgggaggcttggaacaatgtttggctctgacatgtataacatcaaacctgatcttgtcaccttagcaaaggctctttcttctgcatatatgcctattggagctgtccttgtaagccccgaagtttctgatgtaattcattctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="10952" stop="20054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11252" g_stop="11305" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11597" g_stop="11670" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="128" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11758" g_stop="11796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="167" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11886" g_stop="11974" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="256" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12059" g_stop="12135" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="333" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12221" g_stop="12295" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="408" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12296" i_stop="19467" i_length="7172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19468" g_stop="19599" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="540" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19600" i_stop="19681" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19682" g_stop="19754" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="613" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E252400" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11252" e_stop="11305"/>
          <exon e_start="11597" e_stop="11670"/>
          <exon e_start="11758" e_stop="11796"/>
          <exon e_start="11886" e_stop="11974"/>
          <exon e_start="12059" e_stop="12135"/>
          <exon e_start="12221" e_stop="12295"/>
          <exon e_start="19468" e_stop="19599"/>
          <exon e_start="19682" e_stop="19754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAGGTTTTGCTTATTGCCTTCAAACACTTGATTATATAATTAGATCTCAGTTCTTTTCTTTAAACACTTGATAATTCATCAGAAGAACATCGTTTTTGGGATAGTGAAAGAGTGGGACATTATAATTGTTTTGAAAATTGTAAATTTATTCTGTTAGGATATGAAATGAATACAGTAGATACTTGAATTTTTTTAAATTTTTTTTGTATAGAAGTTTGATAAAAATAGCAGGAGATTATGTGAAGAAGTTTATGAGTATAATTTGTAACTTTTTCCCTTATACTTCAAATGTAGGTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGCGTAATTTGTGAATCTCTATCTATTTTTTTTCTTTTGGTTTCCTTTTTCCTTAGTCTTACTAATGTTTTTGTTCATTCATTGTAACAGATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGGGTAATATAATAAAACATCATTTGAAATCAAAATCACTGAGATTCATTATTATGCTTCAAGTATCAGTTTTCTAATACTTTCTTTTGTAGCCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAGGTTGTTACTTATTCTTAATGACTCTTACTTTTCTCCTCTTCCTATGGTGTAATAAACCATTTTATGTTGAAATGTATATATCAGGTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACAGTAACTTCCATCAACTTTTACTCTTGCTACTCAGTTTGTATATTGAGGGTGATTTATTGCTGATTAATTTGCTTTTTCACCTCAGATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAGGTAGTTTTCTTTGCGTTTTTGTCTGTTCTTTTTATTCCAGAAGGAGGAAGCTATATCACTTTTGCATTACTACTTAGAATGCTGCATGCAATGCTCAATCTAGGATGTAAGAGTTCGTTCTGTAGTTTTGGTGCCAAAGAATGAAGGCAATCAGCTAAGTATTTATTTAAGAAACTCCGAAGTTTGTGCTTACTGTCATTGTCAAAGAAGGGTGTAACTGGTAACCTCTTTCTGTCTGTAAAACCCAAGCATATTTGCATTTGGTTTTACCATGAGATAGAATGAAGATCATCAGCCATTGAGAAATTTGTGGGTAGAATGAGGATCATCAGCCACAAGATATGTGCAATAACAAGTCCTTTTCTTTTATTTCTGGCAGTTTTTGCAGTTATCTATCTTTAGTTCCTTCAAATTATTCTTATATACATAACTAAAACAACGATTTCTCCTTTTCATTTATAAATTCAANCTGTATTGAAAAAATATGACATCCTTTTCATTGCGGATGAAGTCATCTGTGCCTTTGGCAGGCTTGNAACAATGTTTGGTTCTGACATGTATTACATCAAACCTGATTCTGTCACCTTAACAANCTATTTTAACACAAATCCTAACTTANNTTAAATCCAACCCCCTGTCTGCAATGTCAAAAACTATCCCTTCNNNGAATTCCNNNCACNNNNNTTNNNTNNTCNTTATCCNNNNAATTGCANCNNNNNCNNNNCNNNCCCNNNNNNNCNNNNNNNCNTNNNCNNNANCCTNCCANANNTNNTNNNCCANNNNNNCTTCNNNNNNNNNNNNNNNCNTTNNCCNNNNTCTTCCNNNNNNCTCCNCCCCNNNCACNNNNCCNCNAANCCCNNTNNCANNNCCCAACTCTCCCCTATCANNNNCACATANNNNTCCNTATCCNNNNTCNNCNNATTCTCNCACANCTAAACCCATACTCCNTCCACACTACCCCTCNCCTTTCACCCTCNNTAACCATCANTTTCATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATCACAACAACATTATATATTGTTATACATAATAAAATTTAGTTGATATAGTATTAGATGAATTTCAAATTTTAATAAATTCATATTCATTAATTTTTAGATAAAGACCAATTTAATACATTCATATATAAAAATAATCTTAACTATATAGTAATTGGGTCTTAATAGAACATCCTAATATTTAAAACCTATATTTAAAGTCAAATATTAAAAGTTAAATGCACAACTTAATTATATTCAAATATTGACATCTTAATCTTATTAAAAATAAATTATACCTACATGATCTCAAATGATTTCTCATTTTAAAGTCAAAACGTGCTACTGGTACCTTATGGTGAAGGTTGTTATTTGTTAATCTTACCTAATCTTGTATAACTGCACATCCAACATCCACTTCTTTAAAATATTTTCATCTATTATTTATTCTCTTGAAAGAATGAACCTAAACATCTAAATTGTTTGTACTTTGATACCACAATTCAATTTACAACGTTATTTGATCTTCTCATGCTAATTAAACATGTAATGCATATAATCAGTTGTATTTTTACTTTCCATGATTATCTTCTTTTTTAAAGTGCTTTCTATATTTTAAGTTTTTTTTTTCTAATTTTCTATTTTGTACAAGTGTAACAAATTCTAATGAATTGTGGCATTTACAAATTAAAGTTCCACAATTTGATGTAATTTGCAGAGGTTATCACAAACCTCCACAATAAAATCGCTACAAATTATAATAAATTGCAATGTTCACAAAACCTCACAAATTGACGTAATTTGCGAAGATTATCACAAACCTCTACAATAAAACCGTTACAAAATAAATTATATCACAGGAGTTAAAATAAACGCTACAAAATAATTCATAGTCAAATTTTCTAAAAACCCCACAAATAAACCTCTCAAAATTAGCTCGTTTGTTTTTGTGGTTCTTAAGCTAATTTTCTTTGACCTTGGTCTTAGGTATATAAAATAATAATGCCAAAATTGAATTTAATTGGCAGCCTAAAGTTGGCGGTCATTGGGGGATGAATTGACCAATTATATTTATTATTTGAATAAAACTTTCAACTCAAATGTTGAACTATATACTGGTCTAAGTTCAGCTTAGCCGGCCATGATTTAGTCACACCATATTTGTTTACCCATTTTATACAAGTCAACCATCTAATTATTTATTCTTATTAAACATCCATTGATAATTTCCACAAGAGTTAATTAGTATAAATATTCTCAAAAATTAATTTCAACATCATTTTCAGAAAACTTCATCAGAAACTAAATCAAAATTAAAGAAGTTACATATAGTATGGGAGTCAATAATACGATTCAGTCGATTTTAAAAATAAATTCTTTACATATATTATCCTTAAAAAAGTGATACTATATGCTCAATAGTGATATGACATGTTTGGAAATTTTTTAGTTATTATTTCATATGAATGGAATTCAACATGAAGATTTTATAATGTTTTCTAATTTCTAAACTTGACATATAAAATACATATAAATTTATTCAGTTTGTATTAGGTATTAAAATGAAGAAAAATGCTATCCTAATTTCTGGTAAGATATTATGAATTATACATTAAAACATATAATAATATTTACATGAAAAAAATATAATAATCATTCGGCTAGATTCGATATTTTTTTAGAATTGTTTTGACACCCACTACCCAAGTGACATATGAGTTTGCCTCATAGCTTGTTGAAGACAAAGCTAGGGGATTAATTTCACATGTCTAACATGGTGAGTCAAAGATGACAATCCAACTGACCTGGCCACTACATAATTATGACATCATAAAGGTTCAAACAAGAAGGAGGATAATTCGCATTCCTCATAATTCTACACTTTAAATTTTGTATATTTTTGAGCCATCATCACTAATATGTCGAATTCAAATGAACATACTCGATCTTTAACTGTATTATTTCACCAGACATATTACGTCACATATATTTCATAATATTAGTTATTATTCATATTAATTGATGTAAGTCTCGAATTATTGAGTCATGTCAATCTTTTATATATGTGGAGGGGATATATCACATCTTATAATTAATTCTTAATATGTTATAAATGACAATCTATTTCTCAATATTAAACAAATATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTCTCCTTACTAAACCTTTTTAATAACTACACTACGATACTATTGGAGGGGAAGAAAGGATCTTCTATTTTATAAAAGTCCAAAACTTCTTTCCTAAGAAAATGATAGATATATAGGAGTTTTTTTCAAGAAAACTTTTTGATTTAAAACACAATTGTGTAGAATCCAACTAAGGTAGGAAATTCGGTTTAAAGTGATTATGGATTCAACGTTTTAGATGTAACTAGGGAGTGGTGGCACTGGAAACGATAACATGAATTTACGGCACTTTTGTCAAATATGTTGCGATAAATAAATAGTCTATGACAATCTTTGTTTTTTCTACTCACTGCACATTTAATACATCAACTATGGCGAAAAATTTGCTTAATTTCAAGTAAATCATTTTTGTAATTTACCTGGTTTAAAGTTCGGTAAAATATATTTGAATATACTGGCTAAGAAATTCTTATTCTTCTTCCTCATCATCTGTTTGGATTACATCTTATTACAGGTGTCCAATGGCGAGATAGGTCAGACGGAGCACGAAGAGTCTGCTTTTGACGGAGAGTTTATAAAAGTAGAGAAGGAAGCTTTGGAATCAAAGGATGGTTCAGATGCTGCAGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGGAGAAGTTCTAGGTTCAAACCTCAAATAGCACAACGTTTTTCTTTGTTTTATCTTGACGAGTCCGGAGCCTAAAGGGTACAAAATATTAACAAAAATTTCAAAACGACATATAAAATTTTATATTAACCAAAACGGCAAAATCGTTGCATCAACAGCGACTTACTCCATCGAAAAAAGCAAATCGCTGCCTCTGCAGCGATTTTATTTTTTTTAAAAATAAGGTAAATCTTTTTAATTATTATTTTTTAAAAAAAAATATGAAAATCGCTGCCTAGGTAGCGATTTCAGTTTTTTTTTTCAAATGTTAAATCGCTTCCTTGGCAGCGATTTTCATTTTTTTTAAAAAAAAAACTTAAATATGTTAATCGCTCAGCGATTTTATATAAAAAAAAAGAACTGTTTTTTAAAAAGAATGTTCAATCGCTGCGATTTTATTTTTTAAAAAATTTAAATCGCTGCCTTGGCAGCGATTTTATATATAAAGAAATTAAATCGCTGCCTTGGCAGCGATTTTATAAAAAAATTCAAATATATAAATCGCTCAGCGATTTTATATAAAAAAAATTAAAATATGGAAATCGCTGCCTAGGCAGCGATTTTCAATTTTTTTTAAAGCATCGATTTTATAAAAAAATAAAAATTTGTAATATTTTTTGAAATTTAAATATATAGCTTATAAGAAAATATACATGATTTAAAAAAAATTAAGAATAAGTAAGGTAACAAATATATTTTCTTTCTAAAAAAAGATATTATATTAAATTTAAATTTAAATGATGTTTGAGTTCAAATAGAATCCTAAATGATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGAGCAGCCGCATCATCATATTTGTATAATTGTTTATGCCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTACACATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATAGTGAATTTATTTATTGTAGATGTGAGCATGAGAAAGAATTATTCCTCTGCAACCATTGCCAAAGCCTCTAAGGACCAATCAACTTGAGGTTTCAAGTGCGCTTGCACGTAAATGGGTGCGACGTAGAAATCATCAAAATAAGGCACGAACTATAATCAGTGTGATTAGGGATATACTAGATAATCTAACTGATGAACAGATATTTAATATTATTAGTATCTTAAACTATTCATATTTTATTTCATTTTAAATACAAATATGTTTGGTAGATCTTTAAATGAGGCACTTATGTTTCACTACCCTAGAAAATTATGTGAATAAAATTGTCACGACCCAAATCGAGCCGCGAGTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCCAAACCCTAACATTTTAACCATAATAGACAGAATACAATGCGGAAGACTTAAAACTCATTAATAAAAATAGATTAATAACTTCTAAAACTCAAACACTTGTTATTATCCCCAAAATCTGGAAGCCATCATCACAAGAACATCTATCCTCAAATTACTAATCTAAGAGTATCTAAGAAGCTAAAATAAGTAAAAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAAATCCGGTGTAATGAAGACTGGCTAGAGTTGCGGTTGAGTTGAAAACGACGGCACGTTTGCTGCACTCCACAAATAATCAAGAAAACAAATACAAGTAGGGGTCAGTACAAGGCACAAGTACTGAGTAGGTATCATCGGCCAACTCAAAATAGAAAACAGTATATATCAGATAATAACATAAAATCAACCATATTCCTCAACAGGTGAAAGCAACAAGTTCACAAATCATGTGTAACCACATCAAACACACCTATGAGAACTCAAGTCTCCACACCATGCTCATTTGGGATATAGGTTCTTTTCATTCGAATTTATTAACATAATTTCAAGATTCATTATCTTTATTCCTCTTGTGTCGGTACGTGACACTCCGCTCCCCTACTACTATGTGCCGAAACGTGACACTCTGATCCCTTAATTCTACGTGTCGATTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCTCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACATGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCACCTAATTCTACGTGTCGGTTCGTGACACCCTCTCCACTAATCTCATTCTATTAATTCATCAAGCCTTATTTTATACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCTTATACCAAGGCATCATCAATCTCATTACTTTAGCTCATCAAGCCTTCTCTTATACCAAGGCATCCTCATTAACAAGGTAAATTTAGGATTAGAGATTCAATAGACTCATCATGCTTATTCATCACAATTATATAATCACATCATGTAAGCACACAATTAAGCATATAGAAGATTTTATAATACTACCCAACACATATCATTCGCTATTAAGAGTCTACTACGAATAGCATAAAAACCATAACCTACCTCCACCGAAGATTCGTGATCAAGCAAGCAATTTCCAAAAGCTTTGTTTCCTCTTCGTTTCACTCTTCTCTCGATTGTTCTCTTTTCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAAGGGCGACTGGGCGCGGAGAATGAAGGAGGGGAGGAAAACCGGTGGGGAGAGAAACGTAGAGGAGAGGGGGGAGATGGGGTTAAGGAGTGGGGGAGATGGGGATTGGGAGGGGATGAGGAGGGAGCGGTGGGTGGAGGTTATGGGGCGGCAGGTTGTGGGCAATGGGAGGGCCTTGTGTGTTATTTCTGGCGGTTGGGCGAGTATATATAGTTAGTTCAGTCGGATTATTGTTATAAACATAAGTGAGACGACGATTTCTCCTGTTCATTTATAGATCCAAGCTGTAGTGAAGAGATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAGGTATGTTAAACAACATCCTATCTCAGCTAAATACCAACTCATGTCTGGATGTAATAAATATCCCTTCCTGAATTTTTTTCAGGCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTC</genome_strand>
        <mrna_strand>AAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG...................................................................................................................................................................................................................................................................................................GTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC.......................................................................................ATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGG.........................................................................................CCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAG....................................................................................GTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACA.....................................................................................ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCTGTAGTGAAGAAATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAG..................................................................................GCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202677" ref_strand="+" ref_description="SGN-E202677 [cLEC-19-N23]">
      <seq>tcaaatgtaggtgaagctggtctggtattataacaatggtcttggaaggccaaacaaaaggaaatttatagctcgagcaaaagcatatcatgggtcaactcttatttctgccagtctcactggccttcctgcattacatcaaaagcttgatctttctgctccatttgttcttcacaccgactgtcctcattattggcgttatcatctgccaggtgagacagaggaggagttctccaccaggttggctaaaaatttacaagatcttatcctcaaagaggggcctgaaacaatagctgcttttattgctgaaccagtcatgggggcaggaggtgtcatacctcctccagctacctattttgataagatccaagctgtcgtgaagaaatatgacattcttttcattgcggatgagggcatctgtgcctttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="11287" stop="19833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11587" g_stop="11670" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11758" g_stop="11796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="123" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11886" g_stop="11974" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="212" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12059" g_stop="12135" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="289" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12221" g_stop="12295" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="364" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12296" i_stop="19467" i_length="7172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19468" g_stop="19533" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="430" r_length="66" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E202677" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11587" e_stop="11670"/>
          <exon e_start="11758" e_stop="11796"/>
          <exon e_start="11886" e_stop="11974"/>
          <exon e_start="12059" e_stop="12135"/>
          <exon e_start="12221" e_stop="12295"/>
          <exon e_start="19468" e_stop="19533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGTAGGTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGCGTAATTTGTGAATCTCTATCTATTTTTTTTCTTTTGGTTTCCTTTTTCCTTAGTCTTACTAATGTTTTTGTTCATTCATTGTAACAGATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGGGTAATATAATAAAACATCATTTGAAATCAAAATCACTGAGATTCATTATTATGCTTCAAGTATCAGTTTTCTAATACTTTCTTTTGTAGCCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAGGTTGTTACTTATTCTTAATGACTCTTACTTTTCTCCTCTTCCTATGGTGTAATAAACCATTTTATGTTGAAATGTATATATCAGGTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACAGTAACTTCCATCAACTTTTACTCTTGCTACTCAGTTTGTATATTGAGGGTGATTTATTGCTGATTAATTTGCTTTTTCACCTCAGATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAGGTAGTTTTCTTTGCGTTTTTGTCTGTTCTTTTTATTCCAGAAGGAGGAAGCTATATCACTTTTGCATTACTACTTAGAATGCTGCATGCAATGCTCAATCTAGGATGTAAGAGTTCGTTCTGTAGTTTTGGTGCCAAAGAATGAAGGCAATCAGCTAAGTATTTATTTAAGAAACTCCGAAGTTTGTGCTTACTGTCATTGTCAAAGAAGGGTGTAACTGGTAACCTCTTTCTGTCTGTAAAACCCAAGCATATTTGCATTTGGTTTTACCATGAGATAGAATGAAGATCATCAGCCATTGAGAAATTTGTGGGTAGAATGAGGATCATCAGCCACAAGATATGTGCAATAACAAGTCCTTTTCTTTTATTTCTGGCAGTTTTTGCAGTTATCTATCTTTAGTTCCTTCAAATTATTCTTATATACATAACTAAAACAACGATTTCTCCTTTTCATTTATAAATTCAANCTGTATTGAAAAAATATGACATCCTTTTCATTGCGGATGAAGTCATCTGTGCCTTTGGCAGGCTTGNAACAATGTTTGGTTCTGACATGTATTACATCAAACCTGATTCTGTCACCTTAACAANCTATTTTAACACAAATCCTAACTTANNTTAAATCCAACCCCCTGTCTGCAATGTCAAAAACTATCCCTTCNNNGAATTCCNNNCACNNNNNTTNNNTNNTCNTTATCCNNNNAATTGCANCNNNNNCNNNNCNNNCCCNNNNNNNCNNNNNNNCNTNNNCNNNANCCTNCCANANNTNNTNNNCCANNNNNNCTTCNNNNNNNNNNNNNNNCNTTNNCCNNNNTCTTCCNNNNNNCTCCNCCCCNNNCACNNNNCCNCNAANCCCNNTNNCANNNCCCAACTCTCCCCTATCANNNNCACATANNNNTCCNTATCCNNNNTCNNCNNATTCTCNCACANCTAAACCCATACTCCNTCCACACTACCCCTCNCCTTTCACCCTCNNTAACCATCANTTTCATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATCACAACAACATTATATATTGTTATACATAATAAAATTTAGTTGATATAGTATTAGATGAATTTCAAATTTTAATAAATTCATATTCATTAATTTTTAGATAAAGACCAATTTAATACATTCATATATAAAAATAATCTTAACTATATAGTAATTGGGTCTTAATAGAACATCCTAATATTTAAAACCTATATTTAAAGTCAAATATTAAAAGTTAAATGCACAACTTAATTATATTCAAATATTGACATCTTAATCTTATTAAAAATAAATTATACCTACATGATCTCAAATGATTTCTCATTTTAAAGTCAAAACGTGCTACTGGTACCTTATGGTGAAGGTTGTTATTTGTTAATCTTACCTAATCTTGTATAACTGCACATCCAACATCCACTTCTTTAAAATATTTTCATCTATTATTTATTCTCTTGAAAGAATGAACCTAAACATCTAAATTGTTTGTACTTTGATACCACAATTCAATTTACAACGTTATTTGATCTTCTCATGCTAATTAAACATGTAATGCATATAATCAGTTGTATTTTTACTTTCCATGATTATCTTCTTTTTTAAAGTGCTTTCTATATTTTAAGTTTTTTTTTTCTAATTTTCTATTTTGTACAAGTGTAACAAATTCTAATGAATTGTGGCATTTACAAATTAAAGTTCCACAATTTGATGTAATTTGCAGAGGTTATCACAAACCTCCACAATAAAATCGCTACAAATTATAATAAATTGCAATGTTCACAAAACCTCACAAATTGACGTAATTTGCGAAGATTATCACAAACCTCTACAATAAAACCGTTACAAAATAAATTATATCACAGGAGTTAAAATAAACGCTACAAAATAATTCATAGTCAAATTTTCTAAAAACCCCACAAATAAACCTCTCAAAATTAGCTCGTTTGTTTTTGTGGTTCTTAAGCTAATTTTCTTTGACCTTGGTCTTAGGTATATAAAATAATAATGCCAAAATTGAATTTAATTGGCAGCCTAAAGTTGGCGGTCATTGGGGGATGAATTGACCAATTATATTTATTATTTGAATAAAACTTTCAACTCAAATGTTGAACTATATACTGGTCTAAGTTCAGCTTAGCCGGCCATGATTTAGTCACACCATATTTGTTTACCCATTTTATACAAGTCAACCATCTAATTATTTATTCTTATTAAACATCCATTGATAATTTCCACAAGAGTTAATTAGTATAAATATTCTCAAAAATTAATTTCAACATCATTTTCAGAAAACTTCATCAGAAACTAAATCAAAATTAAAGAAGTTACATATAGTATGGGAGTCAATAATACGATTCAGTCGATTTTAAAAATAAATTCTTTACATATATTATCCTTAAAAAAGTGATACTATATGCTCAATAGTGATATGACATGTTTGGAAATTTTTTAGTTATTATTTCATATGAATGGAATTCAACATGAAGATTTTATAATGTTTTCTAATTTCTAAACTTGACATATAAAATACATATAAATTTATTCAGTTTGTATTAGGTATTAAAATGAAGAAAAATGCTATCCTAATTTCTGGTAAGATATTATGAATTATACATTAAAACATATAATAATATTTACATGAAAAAAATATAATAATCATTCGGCTAGATTCGATATTTTTTTAGAATTGTTTTGACACCCACTACCCAAGTGACATATGAGTTTGCCTCATAGCTTGTTGAAGACAAAGCTAGGGGATTAATTTCACATGTCTAACATGGTGAGTCAAAGATGACAATCCAACTGACCTGGCCACTACATAATTATGACATCATAAAGGTTCAAACAAGAAGGAGGATAATTCGCATTCCTCATAATTCTACACTTTAAATTTTGTATATTTTTGAGCCATCATCACTAATATGTCGAATTCAAATGAACATACTCGATCTTTAACTGTATTATTTCACCAGACATATTACGTCACATATATTTCATAATATTAGTTATTATTCATATTAATTGATGTAAGTCTCGAATTATTGAGTCATGTCAATCTTTTATATATGTGGAGGGGATATATCACATCTTATAATTAATTCTTAATATGTTATAAATGACAATCTATTTCTCAATATTAAACAAATATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTCTCCTTACTAAACCTTTTTAATAACTACACTACGATACTATTGGAGGGGAAGAAAGGATCTTCTATTTTATAAAAGTCCAAAACTTCTTTCCTAAGAAAATGATAGATATATAGGAGTTTTTTTCAAGAAAACTTTTTGATTTAAAACACAATTGTGTAGAATCCAACTAAGGTAGGAAATTCGGTTTAAAGTGATTATGGATTCAACGTTTTAGATGTAACTAGGGAGTGGTGGCACTGGAAACGATAACATGAATTTACGGCACTTTTGTCAAATATGTTGCGATAAATAAATAGTCTATGACAATCTTTGTTTTTTCTACTCACTGCACATTTAATACATCAACTATGGCGAAAAATTTGCTTAATTTCAAGTAAATCATTTTTGTAATTTACCTGGTTTAAAGTTCGGTAAAATATATTTGAATATACTGGCTAAGAAATTCTTATTCTTCTTCCTCATCATCTGTTTGGATTACATCTTATTACAGGTGTCCAATGGCGAGATAGGTCAGACGGAGCACGAAGAGTCTGCTTTTGACGGAGAGTTTATAAAAGTAGAGAAGGAAGCTTTGGAATCAAAGGATGGTTCAGATGCTGCAGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGGAGAAGTTCTAGGTTCAAACCTCAAATAGCACAACGTTTTTCTTTGTTTTATCTTGACGAGTCCGGAGCCTAAAGGGTACAAAATATTAACAAAAATTTCAAAACGACATATAAAATTTTATATTAACCAAAACGGCAAAATCGTTGCATCAACAGCGACTTACTCCATCGAAAAAAGCAAATCGCTGCCTCTGCAGCGATTTTATTTTTTTTAAAAATAAGGTAAATCTTTTTAATTATTATTTTTTAAAAAAAAATATGAAAATCGCTGCCTAGGTAGCGATTTCAGTTTTTTTTTTCAAATGTTAAATCGCTTCCTTGGCAGCGATTTTCATTTTTTTTAAAAAAAAAACTTAAATATGTTAATCGCTCAGCGATTTTATATAAAAAAAAAGAACTGTTTTTTAAAAAGAATGTTCAATCGCTGCGATTTTATTTTTTAAAAAATTTAAATCGCTGCCTTGGCAGCGATTTTATATATAAAGAAATTAAATCGCTGCCTTGGCAGCGATTTTATAAAAAAATTCAAATATATAAATCGCTCAGCGATTTTATATAAAAAAAATTAAAATATGGAAATCGCTGCCTAGGCAGCGATTTTCAATTTTTTTTAAAGCATCGATTTTATAAAAAAATAAAAATTTGTAATATTTTTTGAAATTTAAATATATAGCTTATAAGAAAATATACATGATTTAAAAAAAATTAAGAATAAGTAAGGTAACAAATATATTTTCTTTCTAAAAAAAGATATTATATTAAATTTAAATTTAAATGATGTTTGAGTTCAAATAGAATCCTAAATGATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGAGCAGCCGCATCATCATATTTGTATAATTGTTTATGCCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTACACATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATAGTGAATTTATTTATTGTAGATGTGAGCATGAGAAAGAATTATTCCTCTGCAACCATTGCCAAAGCCTCTAAGGACCAATCAACTTGAGGTTTCAAGTGCGCTTGCACGTAAATGGGTGCGACGTAGAAATCATCAAAATAAGGCACGAACTATAATCAGTGTGATTAGGGATATACTAGATAATCTAACTGATGAACAGATATTTAATATTATTAGTATCTTAAACTATTCATATTTTATTTCATTTTAAATACAAATATGTTTGGTAGATCTTTAAATGAGGCACTTATGTTTCACTACCCTAGAAAATTATGTGAATAAAATTGTCACGACCCAAATCGAGCCGCGAGTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCCAAACCCTAACATTTTAACCATAATAGACAGAATACAATGCGGAAGACTTAAAACTCATTAATAAAAATAGATTAATAACTTCTAAAACTCAAACACTTGTTATTATCCCCAAAATCTGGAAGCCATCATCACAAGAACATCTATCCTCAAATTACTAATCTAAGAGTATCTAAGAAGCTAAAATAAGTAAAAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAAATCCGGTGTAATGAAGACTGGCTAGAGTTGCGGTTGAGTTGAAAACGACGGCACGTTTGCTGCACTCCACAAATAATCAAGAAAACAAATACAAGTAGGGGTCAGTACAAGGCACAAGTACTGAGTAGGTATCATCGGCCAACTCAAAATAGAAAACAGTATATATCAGATAATAACATAAAATCAACCATATTCCTCAACAGGTGAAAGCAACAAGTTCACAAATCATGTGTAACCACATCAAACACACCTATGAGAACTCAAGTCTCCACACCATGCTCATTTGGGATATAGGTTCTTTTCATTCGAATTTATTAACATAATTTCAAGATTCATTATCTTTATTCCTCTTGTGTCGGTACGTGACACTCCGCTCCCCTACTACTATGTGCCGAAACGTGACACTCTGATCCCTTAATTCTACGTGTCGATTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCTCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACATGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCACCTAATTCTACGTGTCGGTTCGTGACACCCTCTCCACTAATCTCATTCTATTAATTCATCAAGCCTTATTTTATACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCTTATACCAAGGCATCATCAATCTCATTACTTTAGCTCATCAAGCCTTCTCTTATACCAAGGCATCCTCATTAACAAGGTAAATTTAGGATTAGAGATTCAATAGACTCATCATGCTTATTCATCACAATTATATAATCACATCATGTAAGCACACAATTAAGCATATAGAAGATTTTATAATACTACCCAACACATATCATTCGCTATTAAGAGTCTACTACGAATAGCATAAAAACCATAACCTACCTCCACCGAAGATTCGTGATCAAGCAAGCAATTTCCAAAAGCTTTGTTTCCTCTTCGTTTCACTCTTCTCTCGATTGTTCTCTTTTCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAAGGGCGACTGGGCGCGGAGAATGAAGGAGGGGAGGAAAACCGGTGGGGAGAGAAACGTAGAGGAGAGGGGGGAGATGGGGTTAAGGAGTGGGGGAGATGGGGATTGGGAGGGGATGAGGAGGGAGCGGTGGGTGGAGGTTATGGGGCGGCAGGTTGTGGGCAATGGGAGGGCCTTGTGTGTTATTTCTGGCGGTTGGGCGAGTATATATAGTTAGTTCAGTCGGATTATTGTTATAAACATAAGTGAGACGACGATTTCTCCTGTTCATTTATAGATCCAAGCTGTAGTGAAGAGATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGG</genome_strand>
        <mrna_strand>TCAAATGTAGGTGAAGCTGGTCTGGTATTATAACAATGGTCTTGGAAGGCCAAACAAAAGGAAATTTATAGCTCGAGCAAAAGC.......................................................................................ATATCATGGGTCAACTCTTATTTCTGCCAGTCTCACTGG.........................................................................................CCTTCCTGCATTACATCAAAAGCTTGATCTTTCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAG....................................................................................GTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTACAAGATCTTATCCTCAAAGAGGGGCCTGAAACA.....................................................................................ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCTGTCGTGAAGAAATATGACATTCTTTTCATTGCGGATGAGGGCATCTGTGCCTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283260" ref_strand="+" ref_description="SGN-E283260 [cLER-12-E23]">
      <seq>aaatttatagctcgagcaaaagcatatcatggttcaactcttatttctgccagtctcactggccttcctgcattacatcaaaattttgatcttcctgctccatttgttcttcacaccgactgtcctcattattggcgttatcatctgccaggtgagacagaggaggagttctccaccaggttggctaaaaatttagaagatcttatcctcaaagaggggcctgaaacaatagctgcttttattgctgaaccagtcatgggggcaggaggtgtcatacctcctccagctacctattttgataagatccaagctgtagtgaagaaatatgacattcttttcattgcggatgaggtcatctgtgcctttgggaggcttggaacaatgtttggctctgacatgtataacatcaaacctgatcttgtcaccttagcaaaggctctttcttctgcatatatgcctattggagctgtccttgtaagccccgaagtttctgatgtaattcattctcaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="11348" stop="20059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11648" g_stop="11670" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11758" g_stop="11796" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="62" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11886" g_stop="11974" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="151" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12059" g_stop="12135" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="228" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12221" g_stop="12295" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="303" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12296" i_stop="19467" i_length="7172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19468" g_stop="19599" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="435" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19600" i_stop="19681" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19682" g_stop="19757" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="511" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E283260" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11648" e_stop="11670"/>
          <exon e_start="11758" e_stop="11796"/>
          <exon e_start="11886" e_stop="11974"/>
          <exon e_start="12059" e_stop="12135"/>
          <exon e_start="12221" e_stop="12295"/>
          <exon e_start="19468" e_stop="19599"/>
          <exon e_start="19682" e_stop="19757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTATAGCTCGAGCAAAAGCGTAATTTGTGAATCTCTATCTATTTTTTTTCTTTTGGTTTCCTTTTTCCTTAGTCTTACTAATGTTTTTGTTCATTCATTGTAACAGATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGGGTAATATAATAAAACATCATTTGAAATCAAAATCACTGAGATTCATTATTATGCTTCAAGTATCAGTTTTCTAATACTTTCTTTTGTAGCCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAGGTTGTTACTTATTCTTAATGACTCTTACTTTTCTCCTCTTCCTATGGTGTAATAAACCATTTTATGTTGAAATGTATATATCAGGTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACAGTAACTTCCATCAACTTTTACTCTTGCTACTCAGTTTGTATATTGAGGGTGATTTATTGCTGATTAATTTGCTTTTTCACCTCAGATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAGGTAGTTTTCTTTGCGTTTTTGTCTGTTCTTTTTATTCCAGAAGGAGGAAGCTATATCACTTTTGCATTACTACTTAGAATGCTGCATGCAATGCTCAATCTAGGATGTAAGAGTTCGTTCTGTAGTTTTGGTGCCAAAGAATGAAGGCAATCAGCTAAGTATTTATTTAAGAAACTCCGAAGTTTGTGCTTACTGTCATTGTCAAAGAAGGGTGTAACTGGTAACCTCTTTCTGTCTGTAAAACCCAAGCATATTTGCATTTGGTTTTACCATGAGATAGAATGAAGATCATCAGCCATTGAGAAATTTGTGGGTAGAATGAGGATCATCAGCCACAAGATATGTGCAATAACAAGTCCTTTTCTTTTATTTCTGGCAGTTTTTGCAGTTATCTATCTTTAGTTCCTTCAAATTATTCTTATATACATAACTAAAACAACGATTTCTCCTTTTCATTTATAAATTCAANCTGTATTGAAAAAATATGACATCCTTTTCATTGCGGATGAAGTCATCTGTGCCTTTGGCAGGCTTGNAACAATGTTTGGTTCTGACATGTATTACATCAAACCTGATTCTGTCACCTTAACAANCTATTTTAACACAAATCCTAACTTANNTTAAATCCAACCCCCTGTCTGCAATGTCAAAAACTATCCCTTCNNNGAATTCCNNNCACNNNNNTTNNNTNNTCNTTATCCNNNNAATTGCANCNNNNNCNNNNCNNNCCCNNNNNNNCNNNNNNNCNTNNNCNNNANCCTNCCANANNTNNTNNNCCANNNNNNCTTCNNNNNNNNNNNNNNNCNTTNNCCNNNNTCTTCCNNNNNNCTCCNCCCCNNNCACNNNNCCNCNAANCCCNNTNNCANNNCCCAACTCTCCCCTATCANNNNCACATANNNNTCCNTATCCNNNNTCNNCNNATTCTCNCACANCTAAACCCATACTCCNTCCACACTACCCCTCNCCTTTCACCCTCNNTAACCATCANTTTCATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATCACAACAACATTATATATTGTTATACATAATAAAATTTAGTTGATATAGTATTAGATGAATTTCAAATTTTAATAAATTCATATTCATTAATTTTTAGATAAAGACCAATTTAATACATTCATATATAAAAATAATCTTAACTATATAGTAATTGGGTCTTAATAGAACATCCTAATATTTAAAACCTATATTTAAAGTCAAATATTAAAAGTTAAATGCACAACTTAATTATATTCAAATATTGACATCTTAATCTTATTAAAAATAAATTATACCTACATGATCTCAAATGATTTCTCATTTTAAAGTCAAAACGTGCTACTGGTACCTTATGGTGAAGGTTGTTATTTGTTAATCTTACCTAATCTTGTATAACTGCACATCCAACATCCACTTCTTTAAAATATTTTCATCTATTATTTATTCTCTTGAAAGAATGAACCTAAACATCTAAATTGTTTGTACTTTGATACCACAATTCAATTTACAACGTTATTTGATCTTCTCATGCTAATTAAACATGTAATGCATATAATCAGTTGTATTTTTACTTTCCATGATTATCTTCTTTTTTAAAGTGCTTTCTATATTTTAAGTTTTTTTTTTCTAATTTTCTATTTTGTACAAGTGTAACAAATTCTAATGAATTGTGGCATTTACAAATTAAAGTTCCACAATTTGATGTAATTTGCAGAGGTTATCACAAACCTCCACAATAAAATCGCTACAAATTATAATAAATTGCAATGTTCACAAAACCTCACAAATTGACGTAATTTGCGAAGATTATCACAAACCTCTACAATAAAACCGTTACAAAATAAATTATATCACAGGAGTTAAAATAAACGCTACAAAATAATTCATAGTCAAATTTTCTAAAAACCCCACAAATAAACCTCTCAAAATTAGCTCGTTTGTTTTTGTGGTTCTTAAGCTAATTTTCTTTGACCTTGGTCTTAGGTATATAAAATAATAATGCCAAAATTGAATTTAATTGGCAGCCTAAAGTTGGCGGTCATTGGGGGATGAATTGACCAATTATATTTATTATTTGAATAAAACTTTCAACTCAAATGTTGAACTATATACTGGTCTAAGTTCAGCTTAGCCGGCCATGATTTAGTCACACCATATTTGTTTACCCATTTTATACAAGTCAACCATCTAATTATTTATTCTTATTAAACATCCATTGATAATTTCCACAAGAGTTAATTAGTATAAATATTCTCAAAAATTAATTTCAACATCATTTTCAGAAAACTTCATCAGAAACTAAATCAAAATTAAAGAAGTTACATATAGTATGGGAGTCAATAATACGATTCAGTCGATTTTAAAAATAAATTCTTTACATATATTATCCTTAAAAAAGTGATACTATATGCTCAATAGTGATATGACATGTTTGGAAATTTTTTAGTTATTATTTCATATGAATGGAATTCAACATGAAGATTTTATAATGTTTTCTAATTTCTAAACTTGACATATAAAATACATATAAATTTATTCAGTTTGTATTAGGTATTAAAATGAAGAAAAATGCTATCCTAATTTCTGGTAAGATATTATGAATTATACATTAAAACATATAATAATATTTACATGAAAAAAATATAATAATCATTCGGCTAGATTCGATATTTTTTTAGAATTGTTTTGACACCCACTACCCAAGTGACATATGAGTTTGCCTCATAGCTTGTTGAAGACAAAGCTAGGGGATTAATTTCACATGTCTAACATGGTGAGTCAAAGATGACAATCCAACTGACCTGGCCACTACATAATTATGACATCATAAAGGTTCAAACAAGAAGGAGGATAATTCGCATTCCTCATAATTCTACACTTTAAATTTTGTATATTTTTGAGCCATCATCACTAATATGTCGAATTCAAATGAACATACTCGATCTTTAACTGTATTATTTCACCAGACATATTACGTCACATATATTTCATAATATTAGTTATTATTCATATTAATTGATGTAAGTCTCGAATTATTGAGTCATGTCAATCTTTTATATATGTGGAGGGGATATATCACATCTTATAATTAATTCTTAATATGTTATAAATGACAATCTATTTCTCAATATTAAACAAATATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTCTCCTTACTAAACCTTTTTAATAACTACACTACGATACTATTGGAGGGGAAGAAAGGATCTTCTATTTTATAAAAGTCCAAAACTTCTTTCCTAAGAAAATGATAGATATATAGGAGTTTTTTTCAAGAAAACTTTTTGATTTAAAACACAATTGTGTAGAATCCAACTAAGGTAGGAAATTCGGTTTAAAGTGATTATGGATTCAACGTTTTAGATGTAACTAGGGAGTGGTGGCACTGGAAACGATAACATGAATTTACGGCACTTTTGTCAAATATGTTGCGATAAATAAATAGTCTATGACAATCTTTGTTTTTTCTACTCACTGCACATTTAATACATCAACTATGGCGAAAAATTTGCTTAATTTCAAGTAAATCATTTTTGTAATTTACCTGGTTTAAAGTTCGGTAAAATATATTTGAATATACTGGCTAAGAAATTCTTATTCTTCTTCCTCATCATCTGTTTGGATTACATCTTATTACAGGTGTCCAATGGCGAGATAGGTCAGACGGAGCACGAAGAGTCTGCTTTTGACGGAGAGTTTATAAAAGTAGAGAAGGAAGCTTTGGAATCAAAGGATGGTTCAGATGCTGCAGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGGAGAAGTTCTAGGTTCAAACCTCAAATAGCACAACGTTTTTCTTTGTTTTATCTTGACGAGTCCGGAGCCTAAAGGGTACAAAATATTAACAAAAATTTCAAAACGACATATAAAATTTTATATTAACCAAAACGGCAAAATCGTTGCATCAACAGCGACTTACTCCATCGAAAAAAGCAAATCGCTGCCTCTGCAGCGATTTTATTTTTTTTAAAAATAAGGTAAATCTTTTTAATTATTATTTTTTAAAAAAAAATATGAAAATCGCTGCCTAGGTAGCGATTTCAGTTTTTTTTTTCAAATGTTAAATCGCTTCCTTGGCAGCGATTTTCATTTTTTTTAAAAAAAAAACTTAAATATGTTAATCGCTCAGCGATTTTATATAAAAAAAAAGAACTGTTTTTTAAAAAGAATGTTCAATCGCTGCGATTTTATTTTTTAAAAAATTTAAATCGCTGCCTTGGCAGCGATTTTATATATAAAGAAATTAAATCGCTGCCTTGGCAGCGATTTTATAAAAAAATTCAAATATATAAATCGCTCAGCGATTTTATATAAAAAAAATTAAAATATGGAAATCGCTGCCTAGGCAGCGATTTTCAATTTTTTTTAAAGCATCGATTTTATAAAAAAATAAAAATTTGTAATATTTTTTGAAATTTAAATATATAGCTTATAAGAAAATATACATGATTTAAAAAAAATTAAGAATAAGTAAGGTAACAAATATATTTTCTTTCTAAAAAAAGATATTATATTAAATTTAAATTTAAATGATGTTTGAGTTCAAATAGAATCCTAAATGATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGAGCAGCCGCATCATCATATTTGTATAATTGTTTATGCCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTACACATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATAGTGAATTTATTTATTGTAGATGTGAGCATGAGAAAGAATTATTCCTCTGCAACCATTGCCAAAGCCTCTAAGGACCAATCAACTTGAGGTTTCAAGTGCGCTTGCACGTAAATGGGTGCGACGTAGAAATCATCAAAATAAGGCACGAACTATAATCAGTGTGATTAGGGATATACTAGATAATCTAACTGATGAACAGATATTTAATATTATTAGTATCTTAAACTATTCATATTTTATTTCATTTTAAATACAAATATGTTTGGTAGATCTTTAAATGAGGCACTTATGTTTCACTACCCTAGAAAATTATGTGAATAAAATTGTCACGACCCAAATCGAGCCGCGAGTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCCAAACCCTAACATTTTAACCATAATAGACAGAATACAATGCGGAAGACTTAAAACTCATTAATAAAAATAGATTAATAACTTCTAAAACTCAAACACTTGTTATTATCCCCAAAATCTGGAAGCCATCATCACAAGAACATCTATCCTCAAATTACTAATCTAAGAGTATCTAAGAAGCTAAAATAAGTAAAAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAAATCCGGTGTAATGAAGACTGGCTAGAGTTGCGGTTGAGTTGAAAACGACGGCACGTTTGCTGCACTCCACAAATAATCAAGAAAACAAATACAAGTAGGGGTCAGTACAAGGCACAAGTACTGAGTAGGTATCATCGGCCAACTCAAAATAGAAAACAGTATATATCAGATAATAACATAAAATCAACCATATTCCTCAACAGGTGAAAGCAACAAGTTCACAAATCATGTGTAACCACATCAAACACACCTATGAGAACTCAAGTCTCCACACCATGCTCATTTGGGATATAGGTTCTTTTCATTCGAATTTATTAACATAATTTCAAGATTCATTATCTTTATTCCTCTTGTGTCGGTACGTGACACTCCGCTCCCCTACTACTATGTGCCGAAACGTGACACTCTGATCCCTTAATTCTACGTGTCGATTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCTCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACATGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCACCTAATTCTACGTGTCGGTTCGTGACACCCTCTCCACTAATCTCATTCTATTAATTCATCAAGCCTTATTTTATACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCTTATACCAAGGCATCATCAATCTCATTACTTTAGCTCATCAAGCCTTCTCTTATACCAAGGCATCCTCATTAACAAGGTAAATTTAGGATTAGAGATTCAATAGACTCATCATGCTTATTCATCACAATTATATAATCACATCATGTAAGCACACAATTAAGCATATAGAAGATTTTATAATACTACCCAACACATATCATTCGCTATTAAGAGTCTACTACGAATAGCATAAAAACCATAACCTACCTCCACCGAAGATTCGTGATCAAGCAAGCAATTTCCAAAAGCTTTGTTTCCTCTTCGTTTCACTCTTCTCTCGATTGTTCTCTTTTCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAAGGGCGACTGGGCGCGGAGAATGAAGGAGGGGAGGAAAACCGGTGGGGAGAGAAACGTAGAGGAGAGGGGGGAGATGGGGTTAAGGAGTGGGGGAGATGGGGATTGGGAGGGGATGAGGAGGGAGCGGTGGGTGGAGGTTATGGGGCGGCAGGTTGTGGGCAATGGGAGGGCCTTGTGTGTTATTTCTGGCGGTTGGGCGAGTATATATAGTTAGTTCAGTCGGATTATTGTTATAAACATAAGTGAGACGACGATTTCTCCTGTTCATTTATAGATCCAAGCTGTAGTGAAGAGATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAGGTATGTTAAACAACATCCTATCTCAGCTAAATACCAACTCATGTCTGGATGTAATAAATATCCCTTCCTGAATTTTTTTCAGGCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAA</genome_strand>
        <mrna_strand>AAATTTATAGCTCGAGCAAAAGC.......................................................................................ATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGG.........................................................................................CCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAG....................................................................................GTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACA.....................................................................................ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCTGTAGTGAAGAAATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAG..................................................................................GCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263427" ref_strand="+" ref_description="SGN-E263427 [cLEG-69-G13]">
      <seq>atggttcaactcttatttctgccagtctcactggccttcctgcattacatcaaaattttgatcttcctgctccatttgttcttcacaccgactgtcctcattattggcgttatcatctgccaggtgagacagaggaggagttctccaccaggttggctaaaaatttagaagatcttatcctcaaagaggggcctgaaacaatagctgcttttattgctgaaccagtcatgggggcaggaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="11463" stop="12562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11763" g_stop="11796" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11886" g_stop="11974" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="123" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12059" g_stop="12135" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="200" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12221" g_stop="12262" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="242" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E263427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11763" e_stop="11796"/>
          <exon e_start="11886" e_stop="11974"/>
          <exon e_start="12059" e_stop="12135"/>
          <exon e_start="12221" e_stop="12262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTCAACTCTTATTTCTGCCAGTCTCACTGGGTAATATAATAAAACATCATTTGAAATCAAAATCACTGAGATTCATTATTATGCTTCAAGTATCAGTTTTCTAATACTTTCTTTTGTAGCCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAGGTTGTTACTTATTCTTAATGACTCTTACTTTTCTCCTCTTCCTATGGTGTAATAAACCATTTTATGTTGAAATGTATATATCAGGTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACAGTAACTTCCATCAACTTTTACTCTTGCTACTCAGTTTGTATATTGAGGGTGATTTATTGCTGATTAATTTGCTTTTTCACCTCAGATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGT</genome_strand>
        <mrna_strand>ATGGTTCAACTCTTATTTCTGCCAGTCTCACTGG.........................................................................................CCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAG....................................................................................GTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACA.....................................................................................ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336609" ref_strand="+" ref_description="SGN-E336609 [cTOE-4-O22]">
      <seq>tcaactcttatttctgccagtctcactggccttcctgcattacatcaaaattttgatcttcctgctccatttgttcttcacaccgactgnccncannattggcgttatcatctgccaggtgagacagaggaggagttctccaccaggttggctaaaaatttagaagatcttatcctcaaagaggggcctgaaacaatagctgcttttattgctgaaccagtcatgggggcaggaggtgtcatacctcctccagctacctattttgataagatccaagctgtagtgaagaaatatgacattcttttcattgcggatgaggtcatctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="11468" stop="19825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11768" g_stop="11796" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11886" g_stop="11974" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="118" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12059" g_stop="12135" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="195" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12221" g_stop="12295" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="270" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12296" i_stop="12757" i_length="462">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12758" g_stop="12815" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="328" r_length="58" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E336609" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11768" e_stop="11796"/>
          <exon e_start="11886" e_stop="11974"/>
          <exon e_start="12059" e_stop="12135"/>
          <exon e_start="12221" e_stop="12295"/>
          <exon e_start="12758" e_stop="12815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTCTTATTTCTGCCAGTCTCACTGGGTAATATAATAAAACATCATTTGAAATCAAAATCACTGAGATTCATTATTATGCTTCAAGTATCAGTTTTCTAATACTTTCTTTTGTAGCCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAGGTTGTTACTTATTCTTAATGACTCTTACTTTTCTCCTCTTCCTATGGTGTAATAAACCATTTTATGTTGAAATGTATATATCAGGTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACAGTAACTTCCATCAACTTTTACTCTTGCTACTCAGTTTGTATATTGAGGGTGATTTATTGCTGATTAATTTGCTTTTTCACCTCAGATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAGGTAGTTTTCTTTGCGTTTTTGTCTGTTCTTTTTATTCCAGAAGGAGGAAGCTATATCACTTTTGCATTACTACTTAGAATGCTGCATGCAATGCTCAATCTAGGATGTAAGAGTTCGTTCTGTAGTTTTGGTGCCAAAGAATGAAGGCAATCAGCTAAGTATTTATTTAAGAAACTCCGAAGTTTGTGCTTACTGTCATTGTCAAAGAAGGGTGTAACTGGTAACCTCTTTCTGTCTGTAAAACCCAAGCATATTTGCATTTGGTTTTACCATGAGATAGAATGAAGATCATCAGCCATTGAGAAATTTGTGGGTAGAATGAGGATCATCAGCCACAAGATATGTGCAATAACAAGTCCTTTTCTTTTATTTCTGGCAGTTTTTGCAGTTATCTATCTTTAGTTCCTTCAAATTATTCTTATATACATAACTAAAACAACGATTTCTCCTTTTCATTTATAAATTCAANCTGTATTGAAAAAATATGACATCCTTTTCATTGCGGATGAAGTCATCTGTG</genome_strand>
        <mrna_strand>TCAACTCTTATTTCTGCCAGTCTCACTGG.........................................................................................CCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGNCCNCANNATTGGCGTTATCATCTGCCAG....................................................................................GTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACA.....................................................................................ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCTGTAGTGAAGAAATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204111" ref_strand="+" ref_description="SGN-E204111 [cLEC-27-G7]">
      <seq>aaaattttgatcttcctgctccatttgttcttcacaccgactgtcctcattattggcgttatcatctgccaggtgagacagaggaggagttctccaccaggttggctaaaaatttagaagatcttatcctcaaagaggggcctgaaacaatagctgcttttattgctgaaccagtcatgggggcaggaggtgtcatacctcctccagctacctattttgataagatccaagctgtagtgaagaaatatgacattcttttcattgcggatgaggtcatctgtgcctttgggaggcttggaacaatgtttggctctgacatgtataacatcaaacctgatcttgtcaccttagcaaaggctctttcttctgcatatatgcctattggagctgtccttgtaagccccgaagtttctgatgtaattcattctcaaagcaataaacttggttccttttcccatggattcacttattctgggcatcctgttgcatgcgcagtggcattggaagctattaaaatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="11603" stop="20231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11903" g_stop="11974" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12059" g_stop="12135" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="149" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12221" g_stop="12295" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="224" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12296" i_stop="19467" i_length="7172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19468" g_stop="19599" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="356" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19600" i_stop="19681" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19682" g_stop="19769" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="444" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19770" i_stop="19854" i_length="85">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19855" g_stop="19931" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="521" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E204111" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11903" e_stop="11974"/>
          <exon e_start="12059" e_stop="12135"/>
          <exon e_start="12221" e_stop="12295"/>
          <exon e_start="19468" e_stop="19599"/>
          <exon e_start="19682" e_stop="19769"/>
          <exon e_start="19855" e_stop="19931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAGGTTGTTACTTATTCTTAATGACTCTTACTTTTCTCCTCTTCCTATGGTGTAATAAACCATTTTATGTTGAAATGTATATATCAGGTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACAGTAACTTCCATCAACTTTTACTCTTGCTACTCAGTTTGTATATTGAGGGTGATTTATTGCTGATTAATTTGCTTTTTCACCTCAGATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAGGTAGTTTTCTTTGCGTTTTTGTCTGTTCTTTTTATTCCAGAAGGAGGAAGCTATATCACTTTTGCATTACTACTTAGAATGCTGCATGCAATGCTCAATCTAGGATGTAAGAGTTCGTTCTGTAGTTTTGGTGCCAAAGAATGAAGGCAATCAGCTAAGTATTTATTTAAGAAACTCCGAAGTTTGTGCTTACTGTCATTGTCAAAGAAGGGTGTAACTGGTAACCTCTTTCTGTCTGTAAAACCCAAGCATATTTGCATTTGGTTTTACCATGAGATAGAATGAAGATCATCAGCCATTGAGAAATTTGTGGGTAGAATGAGGATCATCAGCCACAAGATATGTGCAATAACAAGTCCTTTTCTTTTATTTCTGGCAGTTTTTGCAGTTATCTATCTTTAGTTCCTTCAAATTATTCTTATATACATAACTAAAACAACGATTTCTCCTTTTCATTTATAAATTCAANCTGTATTGAAAAAATATGACATCCTTTTCATTGCGGATGAAGTCATCTGTGCCTTTGGCAGGCTTGNAACAATGTTTGGTTCTGACATGTATTACATCAAACCTGATTCTGTCACCTTAACAANCTATTTTAACACAAATCCTAACTTANNTTAAATCCAACCCCCTGTCTGCAATGTCAAAAACTATCCCTTCNNNGAATTCCNNNCACNNNNNTTNNNTNNTCNTTATCCNNNNAATTGCANCNNNNNCNNNNCNNNCCCNNNNNNNCNNNNNNNCNTNNNCNNNANCCTNCCANANNTNNTNNNCCANNNNNNCTTCNNNNNNNNNNNNNNNCNTTNNCCNNNNTCTTCCNNNNNNCTCCNCCCCNNNCACNNNNCCNCNAANCCCNNTNNCANNNCCCAACTCTCCCCTATCANNNNCACATANNNNTCCNTATCCNNNNTCNNCNNATTCTCNCACANCTAAACCCATACTCCNTCCACACTACCCCTCNCCTTTCACCCTCNNTAACCATCANTTTCATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATCACAACAACATTATATATTGTTATACATAATAAAATTTAGTTGATATAGTATTAGATGAATTTCAAATTTTAATAAATTCATATTCATTAATTTTTAGATAAAGACCAATTTAATACATTCATATATAAAAATAATCTTAACTATATAGTAATTGGGTCTTAATAGAACATCCTAATATTTAAAACCTATATTTAAAGTCAAATATTAAAAGTTAAATGCACAACTTAATTATATTCAAATATTGACATCTTAATCTTATTAAAAATAAATTATACCTACATGATCTCAAATGATTTCTCATTTTAAAGTCAAAACGTGCTACTGGTACCTTATGGTGAAGGTTGTTATTTGTTAATCTTACCTAATCTTGTATAACTGCACATCCAACATCCACTTCTTTAAAATATTTTCATCTATTATTTATTCTCTTGAAAGAATGAACCTAAACATCTAAATTGTTTGTACTTTGATACCACAATTCAATTTACAACGTTATTTGATCTTCTCATGCTAATTAAACATGTAATGCATATAATCAGTTGTATTTTTACTTTCCATGATTATCTTCTTTTTTAAAGTGCTTTCTATATTTTAAGTTTTTTTTTTCTAATTTTCTATTTTGTACAAGTGTAACAAATTCTAATGAATTGTGGCATTTACAAATTAAAGTTCCACAATTTGATGTAATTTGCAGAGGTTATCACAAACCTCCACAATAAAATCGCTACAAATTATAATAAATTGCAATGTTCACAAAACCTCACAAATTGACGTAATTTGCGAAGATTATCACAAACCTCTACAATAAAACCGTTACAAAATAAATTATATCACAGGAGTTAAAATAAACGCTACAAAATAATTCATAGTCAAATTTTCTAAAAACCCCACAAATAAACCTCTCAAAATTAGCTCGTTTGTTTTTGTGGTTCTTAAGCTAATTTTCTTTGACCTTGGTCTTAGGTATATAAAATAATAATGCCAAAATTGAATTTAATTGGCAGCCTAAAGTTGGCGGTCATTGGGGGATGAATTGACCAATTATATTTATTATTTGAATAAAACTTTCAACTCAAATGTTGAACTATATACTGGTCTAAGTTCAGCTTAGCCGGCCATGATTTAGTCACACCATATTTGTTTACCCATTTTATACAAGTCAACCATCTAATTATTTATTCTTATTAAACATCCATTGATAATTTCCACAAGAGTTAATTAGTATAAATATTCTCAAAAATTAATTTCAACATCATTTTCAGAAAACTTCATCAGAAACTAAATCAAAATTAAAGAAGTTACATATAGTATGGGAGTCAATAATACGATTCAGTCGATTTTAAAAATAAATTCTTTACATATATTATCCTTAAAAAAGTGATACTATATGCTCAATAGTGATATGACATGTTTGGAAATTTTTTAGTTATTATTTCATATGAATGGAATTCAACATGAAGATTTTATAATGTTTTCTAATTTCTAAACTTGACATATAAAATACATATAAATTTATTCAGTTTGTATTAGGTATTAAAATGAAGAAAAATGCTATCCTAATTTCTGGTAAGATATTATGAATTATACATTAAAACATATAATAATATTTACATGAAAAAAATATAATAATCATTCGGCTAGATTCGATATTTTTTTAGAATTGTTTTGACACCCACTACCCAAGTGACATATGAGTTTGCCTCATAGCTTGTTGAAGACAAAGCTAGGGGATTAATTTCACATGTCTAACATGGTGAGTCAAAGATGACAATCCAACTGACCTGGCCACTACATAATTATGACATCATAAAGGTTCAAACAAGAAGGAGGATAATTCGCATTCCTCATAATTCTACACTTTAAATTTTGTATATTTTTGAGCCATCATCACTAATATGTCGAATTCAAATGAACATACTCGATCTTTAACTGTATTATTTCACCAGACATATTACGTCACATATATTTCATAATATTAGTTATTATTCATATTAATTGATGTAAGTCTCGAATTATTGAGTCATGTCAATCTTTTATATATGTGGAGGGGATATATCACATCTTATAATTAATTCTTAATATGTTATAAATGACAATCTATTTCTCAATATTAAACAAATATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTCTCCTTACTAAACCTTTTTAATAACTACACTACGATACTATTGGAGGGGAAGAAAGGATCTTCTATTTTATAAAAGTCCAAAACTTCTTTCCTAAGAAAATGATAGATATATAGGAGTTTTTTTCAAGAAAACTTTTTGATTTAAAACACAATTGTGTAGAATCCAACTAAGGTAGGAAATTCGGTTTAAAGTGATTATGGATTCAACGTTTTAGATGTAACTAGGGAGTGGTGGCACTGGAAACGATAACATGAATTTACGGCACTTTTGTCAAATATGTTGCGATAAATAAATAGTCTATGACAATCTTTGTTTTTTCTACTCACTGCACATTTAATACATCAACTATGGCGAAAAATTTGCTTAATTTCAAGTAAATCATTTTTGTAATTTACCTGGTTTAAAGTTCGGTAAAATATATTTGAATATACTGGCTAAGAAATTCTTATTCTTCTTCCTCATCATCTGTTTGGATTACATCTTATTACAGGTGTCCAATGGCGAGATAGGTCAGACGGAGCACGAAGAGTCTGCTTTTGACGGAGAGTTTATAAAAGTAGAGAAGGAAGCTTTGGAATCAAAGGATGGTTCAGATGCTGCAGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGGAGAAGTTCTAGGTTCAAACCTCAAATAGCACAACGTTTTTCTTTGTTTTATCTTGACGAGTCCGGAGCCTAAAGGGTACAAAATATTAACAAAAATTTCAAAACGACATATAAAATTTTATATTAACCAAAACGGCAAAATCGTTGCATCAACAGCGACTTACTCCATCGAAAAAAGCAAATCGCTGCCTCTGCAGCGATTTTATTTTTTTTAAAAATAAGGTAAATCTTTTTAATTATTATTTTTTAAAAAAAAATATGAAAATCGCTGCCTAGGTAGCGATTTCAGTTTTTTTTTTCAAATGTTAAATCGCTTCCTTGGCAGCGATTTTCATTTTTTTTAAAAAAAAAACTTAAATATGTTAATCGCTCAGCGATTTTATATAAAAAAAAAGAACTGTTTTTTAAAAAGAATGTTCAATCGCTGCGATTTTATTTTTTAAAAAATTTAAATCGCTGCCTTGGCAGCGATTTTATATATAAAGAAATTAAATCGCTGCCTTGGCAGCGATTTTATAAAAAAATTCAAATATATAAATCGCTCAGCGATTTTATATAAAAAAAATTAAAATATGGAAATCGCTGCCTAGGCAGCGATTTTCAATTTTTTTTAAAGCATCGATTTTATAAAAAAATAAAAATTTGTAATATTTTTTGAAATTTAAATATATAGCTTATAAGAAAATATACATGATTTAAAAAAAATTAAGAATAAGTAAGGTAACAAATATATTTTCTTTCTAAAAAAAGATATTATATTAAATTTAAATTTAAATGATGTTTGAGTTCAAATAGAATCCTAAATGATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGAGCAGCCGCATCATCATATTTGTATAATTGTTTATGCCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTACACATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATAGTGAATTTATTTATTGTAGATGTGAGCATGAGAAAGAATTATTCCTCTGCAACCATTGCCAAAGCCTCTAAGGACCAATCAACTTGAGGTTTCAAGTGCGCTTGCACGTAAATGGGTGCGACGTAGAAATCATCAAAATAAGGCACGAACTATAATCAGTGTGATTAGGGATATACTAGATAATCTAACTGATGAACAGATATTTAATATTATTAGTATCTTAAACTATTCATATTTTATTTCATTTTAAATACAAATATGTTTGGTAGATCTTTAAATGAGGCACTTATGTTTCACTACCCTAGAAAATTATGTGAATAAAATTGTCACGACCCAAATCGAGCCGCGAGTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCCAAACCCTAACATTTTAACCATAATAGACAGAATACAATGCGGAAGACTTAAAACTCATTAATAAAAATAGATTAATAACTTCTAAAACTCAAACACTTGTTATTATCCCCAAAATCTGGAAGCCATCATCACAAGAACATCTATCCTCAAATTACTAATCTAAGAGTATCTAAGAAGCTAAAATAAGTAAAAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAAATCCGGTGTAATGAAGACTGGCTAGAGTTGCGGTTGAGTTGAAAACGACGGCACGTTTGCTGCACTCCACAAATAATCAAGAAAACAAATACAAGTAGGGGTCAGTACAAGGCACAAGTACTGAGTAGGTATCATCGGCCAACTCAAAATAGAAAACAGTATATATCAGATAATAACATAAAATCAACCATATTCCTCAACAGGTGAAAGCAACAAGTTCACAAATCATGTGTAACCACATCAAACACACCTATGAGAACTCAAGTCTCCACACCATGCTCATTTGGGATATAGGTTCTTTTCATTCGAATTTATTAACATAATTTCAAGATTCATTATCTTTATTCCTCTTGTGTCGGTACGTGACACTCCGCTCCCCTACTACTATGTGCCGAAACGTGACACTCTGATCCCTTAATTCTACGTGTCGATTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCTCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACATGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCACCTAATTCTACGTGTCGGTTCGTGACACCCTCTCCACTAATCTCATTCTATTAATTCATCAAGCCTTATTTTATACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCTTATACCAAGGCATCATCAATCTCATTACTTTAGCTCATCAAGCCTTCTCTTATACCAAGGCATCCTCATTAACAAGGTAAATTTAGGATTAGAGATTCAATAGACTCATCATGCTTATTCATCACAATTATATAATCACATCATGTAAGCACACAATTAAGCATATAGAAGATTTTATAATACTACCCAACACATATCATTCGCTATTAAGAGTCTACTACGAATAGCATAAAAACCATAACCTACCTCCACCGAAGATTCGTGATCAAGCAAGCAATTTCCAAAAGCTTTGTTTCCTCTTCGTTTCACTCTTCTCTCGATTGTTCTCTTTTCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAAGGGCGACTGGGCGCGGAGAATGAAGGAGGGGAGGAAAACCGGTGGGGAGAGAAACGTAGAGGAGAGGGGGGAGATGGGGTTAAGGAGTGGGGGAGATGGGGATTGGGAGGGGATGAGGAGGGAGCGGTGGGTGGAGGTTATGGGGCGGCAGGTTGTGGGCAATGGGAGGGCCTTGTGTGTTATTTCTGGCGGTTGGGCGAGTATATATAGTTAGTTCAGTCGGATTATTGTTATAAACATAAGTGAGACGACGATTTCTCCTGTTCATTTATAGATCCAAGCTGTAGTGAAGAGATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAGGTATGTTAAACAACATCCTATCTCAGCTAAATACCAACTCATGTCTGGATGTAATAAATATCCCTTCCTGAATTTTTTTCAGGCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTGGTGAGCATTTTATTTATTTCATAGCACATTATAAATCATTTACTTTGTCTGTAAGTCAAAATGCTGAATTTTTTTCTGCAACTAGGTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTAC</genome_strand>
        <mrna_strand>AAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAG....................................................................................GTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACA.....................................................................................ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCTGTAGTGAAGAAATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAG..................................................................................GCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTG.....................................................................................GTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555196" ref_strand="+" ref_description="SGN-E555196 [cTSC-6-L2]">
      <seq>tgatcttcctgctccatttgttcttcacaccgacctgtcctcattattggcagttatcatctgccagtgtgagacagaagtaggagttctccaccggtgttggctaaaaatttagaagatcttatcctcaaagaggggcctgaaacaatagctgcttttattgctgaaccagtcatgggggcaggaggtgtcatacctccgccagctacctattttgataagatccgagctgtagtgaagaagtgatgacattcttttcattgcggatgaagtcatctgtgcctttgggaggcttggaacaatggttggctctgacatgtataacatctaacctgatcttgtcaccttagcaaaggctctttcttctgcatatatgcctattggagctgtcctgtgtaagccccgaagtttctgatgtaattcattcgtcgagcaagaaacttggttccttttcccatggattcacttattctgggcatcctgttgcatgcgcagtggcattggaagctattaaaatctacaaggagcgaaatatggttgagagagtaaatagaatatccccaaagtttcaagaaagtctgaaggcattttctgacagtcccattatcggagagattaggggacttggtttgatccttgccacagagtttgcgaacaacaaatctcctaatgatcctttccctcccgaatggggtgttggtgcatattttggagcgcaatgtcagaagaatggcatgttggtacgagttgctggtgataccatcatgatgtctcctccatttgtagttactccagaagaacttgacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="11610" stop="20866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11910" g_stop="11974" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84">
            <donor d_prob="0.993" d_score="0.87"/>
            <acceptor a_prob="0.995" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12059" g_stop="12135" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="147" r_length="79" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12221" g_stop="12295" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="222" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12296" i_stop="19467" i_length="7172">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19468" g_stop="19599" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="355" r_length="133" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19600" i_stop="19681" i_length="82">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19682" g_stop="19769" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="444" r_length="89" r_score="0.920"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19770" i_stop="19854" i_length="85">
            <donor d_prob="0.988" d_score="0.90"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19855" g_stop="19933" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="523" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19934" i_stop="20113" i_length="180">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.691" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20114" g_stop="20204" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="614" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20205" i_stop="20290" i_length="86">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20291" g_stop="20369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="693" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="20370" i_stop="20451" i_length="82">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20452" g_stop="20566" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="808" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E555196" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11910" e_stop="11974"/>
          <exon e_start="12059" e_stop="12135"/>
          <exon e_start="12221" e_stop="12295"/>
          <exon e_start="19468" e_stop="19599"/>
          <exon e_start="19682" e_stop="19769"/>
          <exon e_start="19855" e_stop="19933"/>
          <exon e_start="20114" e_stop="20204"/>
          <exon e_start="20291" e_stop="20369"/>
          <exon e_start="20452" e_stop="20566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTTCCTGCTCCATTTGTTCTTCACACCGAC-TGTCCTCATTATTGGC-GTTATCATCTGCCAG-GTTGTTACTTATTCTTAATGACTCTTACTTTTCTCCTCTTCCTATGGTGTAATAAACCATTTTATGTTGAAATGTATATATCAGGTGAGACAG-AGGAGGAGTTCTCCACCAG-GTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACAGTAACTTCCATCAACTTTTACTCTTGCTACTCAGTTTGTATATTGAGGGTGATTTATTGCTGATTAATTTGCTTTTTCACCTCAGATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAGGTAGTTTTCTTTGCGTTTTTGTCTGTTCTTTTTATTCCAGAAGGAGGAAGCTATATCACTTTTGCATTACTACTTAGAATGCTGCATGCAATGCTCAATCTAGGATGTAAGAGTTCGTTCTGTAGTTTTGGTGCCAAAGAATGAAGGCAATCAGCTAAGTATTTATTTAAGAAACTCCGAAGTTTGTGCTTACTGTCATTGTCAAAGAAGGGTGTAACTGGTAACCTCTTTCTGTCTGTAAAACCCAAGCATATTTGCATTTGGTTTTACCATGAGATAGAATGAAGATCATCAGCCATTGAGAAATTTGTGGGTAGAATGAGGATCATCAGCCACAAGATATGTGCAATAACAAGTCCTTTTCTTTTATTTCTGGCAGTTTTTGCAGTTATCTATCTTTAGTTCCTTCAAATTATTCTTATATACATAACTAAAACAACGATTTCTCCTTTTCATTTATAAATTCAANCTGTATTGAAAAAATATGACATCCTTTTCATTGCGGATGAAGTCATCTGTGCCTTTGGCAGGCTTGNAACAATGTTTGGTTCTGACATGTATTACATCAAACCTGATTCTGTCACCTTAACAANCTATTTTAACACAAATCCTAACTTANNTTAAATCCAACCCCCTGTCTGCAATGTCAAAAACTATCCCTTCNNNGAATTCCNNNCACNNNNNTTNNNTNNTCNTTATCCNNNNAATTGCANCNNNNNCNNNNCNNNCCCNNNNNNNCNNNNNNNCNTNNNCNNNANCCTNCCANANNTNNTNNNCCANNNNNNCTTCNNNNNNNNNNNNNNNCNTTNNCCNNNNTCTTCCNNNNNNCTCCNCCCCNNNCACNNNNCCNCNAANCCCNNTNNCANNNCCCAACTCTCCCCTATCANNNNCACATANNNNTCCNTATCCNNNNTCNNCNNATTCTCNCACANCTAAACCCATACTCCNTCCACACTACCCCTCNCCTTTCACCCTCNNTAACCATCANTTTCATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATCACAACAACATTATATATTGTTATACATAATAAAATTTAGTTGATATAGTATTAGATGAATTTCAAATTTTAATAAATTCATATTCATTAATTTTTAGATAAAGACCAATTTAATACATTCATATATAAAAATAATCTTAACTATATAGTAATTGGGTCTTAATAGAACATCCTAATATTTAAAACCTATATTTAAAGTCAAATATTAAAAGTTAAATGCACAACTTAATTATATTCAAATATTGACATCTTAATCTTATTAAAAATAAATTATACCTACATGATCTCAAATGATTTCTCATTTTAAAGTCAAAACGTGCTACTGGTACCTTATGGTGAAGGTTGTTATTTGTTAATCTTACCTAATCTTGTATAACTGCACATCCAACATCCACTTCTTTAAAATATTTTCATCTATTATTTATTCTCTTGAAAGAATGAACCTAAACATCTAAATTGTTTGTACTTTGATACCACAATTCAATTTACAACGTTATTTGATCTTCTCATGCTAATTAAACATGTAATGCATATAATCAGTTGTATTTTTACTTTCCATGATTATCTTCTTTTTTAAAGTGCTTTCTATATTTTAAGTTTTTTTTTTCTAATTTTCTATTTTGTACAAGTGTAACAAATTCTAATGAATTGTGGCATTTACAAATTAAAGTTCCACAATTTGATGTAATTTGCAGAGGTTATCACAAACCTCCACAATAAAATCGCTACAAATTATAATAAATTGCAATGTTCACAAAACCTCACAAATTGACGTAATTTGCGAAGATTATCACAAACCTCTACAATAAAACCGTTACAAAATAAATTATATCACAGGAGTTAAAATAAACGCTACAAAATAATTCATAGTCAAATTTTCTAAAAACCCCACAAATAAACCTCTCAAAATTAGCTCGTTTGTTTTTGTGGTTCTTAAGCTAATTTTCTTTGACCTTGGTCTTAGGTATATAAAATAATAATGCCAAAATTGAATTTAATTGGCAGCCTAAAGTTGGCGGTCATTGGGGGATGAATTGACCAATTATATTTATTATTTGAATAAAACTTTCAACTCAAATGTTGAACTATATACTGGTCTAAGTTCAGCTTAGCCGGCCATGATTTAGTCACACCATATTTGTTTACCCATTTTATACAAGTCAACCATCTAATTATTTATTCTTATTAAACATCCATTGATAATTTCCACAAGAGTTAATTAGTATAAATATTCTCAAAAATTAATTTCAACATCATTTTCAGAAAACTTCATCAGAAACTAAATCAAAATTAAAGAAGTTACATATAGTATGGGAGTCAATAATACGATTCAGTCGATTTTAAAAATAAATTCTTTACATATATTATCCTTAAAAAAGTGATACTATATGCTCAATAGTGATATGACATGTTTGGAAATTTTTTAGTTATTATTTCATATGAATGGAATTCAACATGAAGATTTTATAATGTTTTCTAATTTCTAAACTTGACATATAAAATACATATAAATTTATTCAGTTTGTATTAGGTATTAAAATGAAGAAAAATGCTATCCTAATTTCTGGTAAGATATTATGAATTATACATTAAAACATATAATAATATTTACATGAAAAAAATATAATAATCATTCGGCTAGATTCGATATTTTTTTAGAATTGTTTTGACACCCACTACCCAAGTGACATATGAGTTTGCCTCATAGCTTGTTGAAGACAAAGCTAGGGGATTAATTTCACATGTCTAACATGGTGAGTCAAAGATGACAATCCAACTGACCTGGCCACTACATAATTATGACATCATAAAGGTTCAAACAAGAAGGAGGATAATTCGCATTCCTCATAATTCTACACTTTAAATTTTGTATATTTTTGAGCCATCATCACTAATATGTCGAATTCAAATGAACATACTCGATCTTTAACTGTATTATTTCACCAGACATATTACGTCACATATATTTCATAATATTAGTTATTATTCATATTAATTGATGTAAGTCTCGAATTATTGAGTCATGTCAATCTTTTATATATGTGGAGGGGATATATCACATCTTATAATTAATTCTTAATATGTTATAAATGACAATCTATTTCTCAATATTAAACAAATATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTCTCCTTACTAAACCTTTTTAATAACTACACTACGATACTATTGGAGGGGAAGAAAGGATCTTCTATTTTATAAAAGTCCAAAACTTCTTTCCTAAGAAAATGATAGATATATAGGAGTTTTTTTCAAGAAAACTTTTTGATTTAAAACACAATTGTGTAGAATCCAACTAAGGTAGGAAATTCGGTTTAAAGTGATTATGGATTCAACGTTTTAGATGTAACTAGGGAGTGGTGGCACTGGAAACGATAACATGAATTTACGGCACTTTTGTCAAATATGTTGCGATAAATAAATAGTCTATGACAATCTTTGTTTTTTCTACTCACTGCACATTTAATACATCAACTATGGCGAAAAATTTGCTTAATTTCAAGTAAATCATTTTTGTAATTTACCTGGTTTAAAGTTCGGTAAAATATATTTGAATATACTGGCTAAGAAATTCTTATTCTTCTTCCTCATCATCTGTTTGGATTACATCTTATTACAGGTGTCCAATGGCGAGATAGGTCAGACGGAGCACGAAGAGTCTGCTTTTGACGGAGAGTTTATAAAAGTAGAGAAGGAAGCTTTGGAATCAAAGGATGGTTCAGATGCTGCAGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGGAGAAGTTCTAGGTTCAAACCTCAAATAGCACAACGTTTTTCTTTGTTTTATCTTGACGAGTCCGGAGCCTAAAGGGTACAAAATATTAACAAAAATTTCAAAACGACATATAAAATTTTATATTAACCAAAACGGCAAAATCGTTGCATCAACAGCGACTTACTCCATCGAAAAAAGCAAATCGCTGCCTCTGCAGCGATTTTATTTTTTTTAAAAATAAGGTAAATCTTTTTAATTATTATTTTTTAAAAAAAAATATGAAAATCGCTGCCTAGGTAGCGATTTCAGTTTTTTTTTTCAAATGTTAAATCGCTTCCTTGGCAGCGATTTTCATTTTTTTTAAAAAAAAAACTTAAATATGTTAATCGCTCAGCGATTTTATATAAAAAAAAAGAACTGTTTTTTAAAAAGAATGTTCAATCGCTGCGATTTTATTTTTTAAAAAATTTAAATCGCTGCCTTGGCAGCGATTTTATATATAAAGAAATTAAATCGCTGCCTTGGCAGCGATTTTATAAAAAAATTCAAATATATAAATCGCTCAGCGATTTTATATAAAAAAAATTAAAATATGGAAATCGCTGCCTAGGCAGCGATTTTCAATTTTTTTTAAAGCATCGATTTTATAAAAAAATAAAAATTTGTAATATTTTTTGAAATTTAAATATATAGCTTATAAGAAAATATACATGATTTAAAAAAAATTAAGAATAAGTAAGGTAACAAATATATTTTCTTTCTAAAAAAAGATATTATATTAAATTTAAATTTAAATGATGTTTGAGTTCAAATAGAATCCTAAATGATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGAGCAGCCGCATCATCATATTTGTATAATTGTTTATGCCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTACACATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATAGTGAATTTATTTATTGTAGATGTGAGCATGAGAAAGAATTATTCCTCTGCAACCATTGCCAAAGCCTCTAAGGACCAATCAACTTGAGGTTTCAAGTGCGCTTGCACGTAAATGGGTGCGACGTAGAAATCATCAAAATAAGGCACGAACTATAATCAGTGTGATTAGGGATATACTAGATAATCTAACTGATGAACAGATATTTAATATTATTAGTATCTTAAACTATTCATATTTTATTTCATTTTAAATACAAATATGTTTGGTAGATCTTTAAATGAGGCACTTATGTTTCACTACCCTAGAAAATTATGTGAATAAAATTGTCACGACCCAAATCGAGCCGCGAGTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCCAAACCCTAACATTTTAACCATAATAGACAGAATACAATGCGGAAGACTTAAAACTCATTAATAAAAATAGATTAATAACTTCTAAAACTCAAACACTTGTTATTATCCCCAAAATCTGGAAGCCATCATCACAAGAACATCTATCCTCAAATTACTAATCTAAGAGTATCTAAGAAGCTAAAATAAGTAAAAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAAATCCGGTGTAATGAAGACTGGCTAGAGTTGCGGTTGAGTTGAAAACGACGGCACGTTTGCTGCACTCCACAAATAATCAAGAAAACAAATACAAGTAGGGGTCAGTACAAGGCACAAGTACTGAGTAGGTATCATCGGCCAACTCAAAATAGAAAACAGTATATATCAGATAATAACATAAAATCAACCATATTCCTCAACAGGTGAAAGCAACAAGTTCACAAATCATGTGTAACCACATCAAACACACCTATGAGAACTCAAGTCTCCACACCATGCTCATTTGGGATATAGGTTCTTTTCATTCGAATTTATTAACATAATTTCAAGATTCATTATCTTTATTCCTCTTGTGTCGGTACGTGACACTCCGCTCCCCTACTACTATGTGCCGAAACGTGACACTCTGATCCCTTAATTCTACGTGTCGATTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCTCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACATGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCACCTAATTCTACGTGTCGGTTCGTGACACCCTCTCCACTAATCTCATTCTATTAATTCATCAAGCCTTATTTTATACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCTTATACCAAGGCATCATCAATCTCATTACTTTAGCTCATCAAGCCTTCTCTTATACCAAGGCATCCTCATTAACAAGGTAAATTTAGGATTAGAGATTCAATAGACTCATCATGCTTATTCATCACAATTATATAATCACATCATGTAAGCACACAATTAAGCATATAGAAGATTTTATAATACTACCCAACACATATCATTCGCTATTAAGAGTCTACTACGAATAGCATAAAAACCATAACCTACCTCCACCGAAGATTCGTGATCAAGCAAGCAATTTCCAAAAGCTTTGTTTCCTCTTCGTTTCACTCTTCTCTCGATTGTTCTCTTTTCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAAGGGCGACTGGGCGCGGAGAATGAAGGAGGGGAGGAAAACCGGTGGGGAGAGAAACGTAGAGGAGAGGGGGGAGATGGGGTTAAGGAGTGGGGGAGATGGGGATTGGGAGGGGATGAGGAGGGAGCGGTGGGTGGAGGTTATGGGGCGGCAGGTTGTGGGCAATGGGAGGGCCTTGTGTGTTATTTCTGGCGGTTGGGCGAGTATATATAGTTAGTTCAGTCGGATTATTGTTATAAACATAAGTGAGACGACGATTTCTCCTGTTCATTTATAGATCCAAGCTGTAGTGAAG-AGATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAGGTATGTTAAACAACATCCTATCTCAGCTAAATACCAACTCATGTCTGGATGTAATAAATATCCCTTCCTGAATTTTTTTCAGGCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCT-TGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTGGTGAGCATTTTATTTATTTCATAGCACATTATAAATCATTTACTTTGTCTGTAAGTCAAAATGCTGAATTTTTTTCTGCAACTAGGTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAAGTATGTAGGCTTGAATTGCCTTTCGACTTCCTTTTATGATCATGTGCTTTTCATTCTTTATCCTCATTGCAACTTCCATATGGTTACTTTAGTATTATGATTGCTGATAACTCTGCATTTTAGTTTATGGGCTTGATACCTATTGTACTTAGCTAGTGCTGAAGATACAAATTATTTCAGGGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAGGTACAACTCTTATCACTTGTATAAAAGTGATTAAAACTTTATAAAAGGTTTTGCTATTCATTTTCTTCACTCTTATTTTCCTGTAGATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCCTAATGATCCTTTCCCTCCCGAATGGGGTGCGTAATTTTCCTCATTTGCTCTTCAATTGGAGGTCATATTAAACTCTTATTTCATTCAATCGTCTCATTGCCGCCTCAGGTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGA</genome_strand>
        <mrna_strand>TGATCTTCCTGCTCCATTTGTTCTTCACACCGACCTGTCCTCATTATTGGCAGTTATCATCTGCCAGT....................................................................................GTGAGACAGAAGTAGGAGTTCTCCACCGGTGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACA.....................................................................................ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCGCCAGCTACCTATTTTGATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296358" ref_strand="-" ref_description="SGN-E296358 [cLET-19-C10](-)">
      <seq>gactgtcctcattattggcgttatcatctgccaggtgagacagaggaggagttctccaccaggttggctaaaaatttagaagatcttatcctcaaagaggggcctgaaacaatagctgcttttattgctgaaccagtcatgggggcaggaggtgtcatacctcctccagctacctattttgataagatccaagctgtagtgaagaaatatgacattcttttcattgcggatgaggtcatctgtgcctttgggaggcttggaacaatgtttggctctgacatgtataacatcaaacctgatcttgtcaccttagcaaaggctctttcttctgcatatatgcctattggagctgtccttgtaagccccgaagtttctgatgtaattcattctcaaagcaataaacttggttccttttcccatggattcacttattctgggcatcctgttgcatgcgcagtggcattggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="11641" stop="20216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11941" g_stop="11974" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12059" g_stop="12135" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="111" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12221" g_stop="12295" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="186" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12296" i_stop="19467" i_length="7172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19468" g_stop="19599" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="318" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19600" i_stop="19681" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19682" g_stop="19769" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="406" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19770" i_stop="19854" i_length="85">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19855" g_stop="19916" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="468" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E296358" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296358" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11941" e_stop="11974"/>
          <exon e_start="12059" e_stop="12135"/>
          <exon e_start="12221" e_stop="12295"/>
          <exon e_start="19468" e_stop="19599"/>
          <exon e_start="19682" e_stop="19769"/>
          <exon e_start="19855" e_stop="19916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGTCCTCATTATTGGCGTTATCATCTGCCAGGTTGTTACTTATTCTTAATGACTCTTACTTTTCTCCTCTTCCTATGGTGTAATAAACCATTTTATGTTGAAATGTATATATCAGGTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACAGTAACTTCCATCAACTTTTACTCTTGCTACTCAGTTTGTATATTGAGGGTGATTTATTGCTGATTAATTTGCTTTTTCACCTCAGATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAGGTAGTTTTCTTTGCGTTTTTGTCTGTTCTTTTTATTCCAGAAGGAGGAAGCTATATCACTTTTGCATTACTACTTAGAATGCTGCATGCAATGCTCAATCTAGGATGTAAGAGTTCGTTCTGTAGTTTTGGTGCCAAAGAATGAAGGCAATCAGCTAAGTATTTATTTAAGAAACTCCGAAGTTTGTGCTTACTGTCATTGTCAAAGAAGGGTGTAACTGGTAACCTCTTTCTGTCTGTAAAACCCAAGCATATTTGCATTTGGTTTTACCATGAGATAGAATGAAGATCATCAGCCATTGAGAAATTTGTGGGTAGAATGAGGATCATCAGCCACAAGATATGTGCAATAACAAGTCCTTTTCTTTTATTTCTGGCAGTTTTTGCAGTTATCTATCTTTAGTTCCTTCAAATTATTCTTATATACATAACTAAAACAACGATTTCTCCTTTTCATTTATAAATTCAANCTGTATTGAAAAAATATGACATCCTTTTCATTGCGGATGAAGTCATCTGTGCCTTTGGCAGGCTTGNAACAATGTTTGGTTCTGACATGTATTACATCAAACCTGATTCTGTCACCTTAACAANCTATTTTAACACAAATCCTAACTTANNTTAAATCCAACCCCCTGTCTGCAATGTCAAAAACTATCCCTTCNNNGAATTCCNNNCACNNNNNTTNNNTNNTCNTTATCCNNNNAATTGCANCNNNNNCNNNNCNNNCCCNNNNNNNCNNNNNNNCNTNNNCNNNANCCTNCCANANNTNNTNNNCCANNNNNNCTTCNNNNNNNNNNNNNNNCNTTNNCCNNNNTCTTCCNNNNNNCTCCNCCCCNNNCACNNNNCCNCNAANCCCNNTNNCANNNCCCAACTCTCCCCTATCANNNNCACATANNNNTCCNTATCCNNNNTCNNCNNATTCTCNCACANCTAAACCCATACTCCNTCCACACTACCCCTCNCCTTTCACCCTCNNTAACCATCANTTTCATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATCACAACAACATTATATATTGTTATACATAATAAAATTTAGTTGATATAGTATTAGATGAATTTCAAATTTTAATAAATTCATATTCATTAATTTTTAGATAAAGACCAATTTAATACATTCATATATAAAAATAATCTTAACTATATAGTAATTGGGTCTTAATAGAACATCCTAATATTTAAAACCTATATTTAAAGTCAAATATTAAAAGTTAAATGCACAACTTAATTATATTCAAATATTGACATCTTAATCTTATTAAAAATAAATTATACCTACATGATCTCAAATGATTTCTCATTTTAAAGTCAAAACGTGCTACTGGTACCTTATGGTGAAGGTTGTTATTTGTTAATCTTACCTAATCTTGTATAACTGCACATCCAACATCCACTTCTTTAAAATATTTTCATCTATTATTTATTCTCTTGAAAGAATGAACCTAAACATCTAAATTGTTTGTACTTTGATACCACAATTCAATTTACAACGTTATTTGATCTTCTCATGCTAATTAAACATGTAATGCATATAATCAGTTGTATTTTTACTTTCCATGATTATCTTCTTTTTTAAAGTGCTTTCTATATTTTAAGTTTTTTTTTTCTAATTTTCTATTTTGTACAAGTGTAACAAATTCTAATGAATTGTGGCATTTACAAATTAAAGTTCCACAATTTGATGTAATTTGCAGAGGTTATCACAAACCTCCACAATAAAATCGCTACAAATTATAATAAATTGCAATGTTCACAAAACCTCACAAATTGACGTAATTTGCGAAGATTATCACAAACCTCTACAATAAAACCGTTACAAAATAAATTATATCACAGGAGTTAAAATAAACGCTACAAAATAATTCATAGTCAAATTTTCTAAAAACCCCACAAATAAACCTCTCAAAATTAGCTCGTTTGTTTTTGTGGTTCTTAAGCTAATTTTCTTTGACCTTGGTCTTAGGTATATAAAATAATAATGCCAAAATTGAATTTAATTGGCAGCCTAAAGTTGGCGGTCATTGGGGGATGAATTGACCAATTATATTTATTATTTGAATAAAACTTTCAACTCAAATGTTGAACTATATACTGGTCTAAGTTCAGCTTAGCCGGCCATGATTTAGTCACACCATATTTGTTTACCCATTTTATACAAGTCAACCATCTAATTATTTATTCTTATTAAACATCCATTGATAATTTCCACAAGAGTTAATTAGTATAAATATTCTCAAAAATTAATTTCAACATCATTTTCAGAAAACTTCATCAGAAACTAAATCAAAATTAAAGAAGTTACATATAGTATGGGAGTCAATAATACGATTCAGTCGATTTTAAAAATAAATTCTTTACATATATTATCCTTAAAAAAGTGATACTATATGCTCAATAGTGATATGACATGTTTGGAAATTTTTTAGTTATTATTTCATATGAATGGAATTCAACATGAAGATTTTATAATGTTTTCTAATTTCTAAACTTGACATATAAAATACATATAAATTTATTCAGTTTGTATTAGGTATTAAAATGAAGAAAAATGCTATCCTAATTTCTGGTAAGATATTATGAATTATACATTAAAACATATAATAATATTTACATGAAAAAAATATAATAATCATTCGGCTAGATTCGATATTTTTTTAGAATTGTTTTGACACCCACTACCCAAGTGACATATGAGTTTGCCTCATAGCTTGTTGAAGACAAAGCTAGGGGATTAATTTCACATGTCTAACATGGTGAGTCAAAGATGACAATCCAACTGACCTGGCCACTACATAATTATGACATCATAAAGGTTCAAACAAGAAGGAGGATAATTCGCATTCCTCATAATTCTACACTTTAAATTTTGTATATTTTTGAGCCATCATCACTAATATGTCGAATTCAAATGAACATACTCGATCTTTAACTGTATTATTTCACCAGACATATTACGTCACATATATTTCATAATATTAGTTATTATTCATATTAATTGATGTAAGTCTCGAATTATTGAGTCATGTCAATCTTTTATATATGTGGAGGGGATATATCACATCTTATAATTAATTCTTAATATGTTATAAATGACAATCTATTTCTCAATATTAAACAAATATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTCTCCTTACTAAACCTTTTTAATAACTACACTACGATACTATTGGAGGGGAAGAAAGGATCTTCTATTTTATAAAAGTCCAAAACTTCTTTCCTAAGAAAATGATAGATATATAGGAGTTTTTTTCAAGAAAACTTTTTGATTTAAAACACAATTGTGTAGAATCCAACTAAGGTAGGAAATTCGGTTTAAAGTGATTATGGATTCAACGTTTTAGATGTAACTAGGGAGTGGTGGCACTGGAAACGATAACATGAATTTACGGCACTTTTGTCAAATATGTTGCGATAAATAAATAGTCTATGACAATCTTTGTTTTTTCTACTCACTGCACATTTAATACATCAACTATGGCGAAAAATTTGCTTAATTTCAAGTAAATCATTTTTGTAATTTACCTGGTTTAAAGTTCGGTAAAATATATTTGAATATACTGGCTAAGAAATTCTTATTCTTCTTCCTCATCATCTGTTTGGATTACATCTTATTACAGGTGTCCAATGGCGAGATAGGTCAGACGGAGCACGAAGAGTCTGCTTTTGACGGAGAGTTTATAAAAGTAGAGAAGGAAGCTTTGGAATCAAAGGATGGTTCAGATGCTGCAGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGGAGAAGTTCTAGGTTCAAACCTCAAATAGCACAACGTTTTTCTTTGTTTTATCTTGACGAGTCCGGAGCCTAAAGGGTACAAAATATTAACAAAAATTTCAAAACGACATATAAAATTTTATATTAACCAAAACGGCAAAATCGTTGCATCAACAGCGACTTACTCCATCGAAAAAAGCAAATCGCTGCCTCTGCAGCGATTTTATTTTTTTTAAAAATAAGGTAAATCTTTTTAATTATTATTTTTTAAAAAAAAATATGAAAATCGCTGCCTAGGTAGCGATTTCAGTTTTTTTTTTCAAATGTTAAATCGCTTCCTTGGCAGCGATTTTCATTTTTTTTAAAAAAAAAACTTAAATATGTTAATCGCTCAGCGATTTTATATAAAAAAAAAGAACTGTTTTTTAAAAAGAATGTTCAATCGCTGCGATTTTATTTTTTAAAAAATTTAAATCGCTGCCTTGGCAGCGATTTTATATATAAAGAAATTAAATCGCTGCCTTGGCAGCGATTTTATAAAAAAATTCAAATATATAAATCGCTCAGCGATTTTATATAAAAAAAATTAAAATATGGAAATCGCTGCCTAGGCAGCGATTTTCAATTTTTTTTAAAGCATCGATTTTATAAAAAAATAAAAATTTGTAATATTTTTTGAAATTTAAATATATAGCTTATAAGAAAATATACATGATTTAAAAAAAATTAAGAATAAGTAAGGTAACAAATATATTTTCTTTCTAAAAAAAGATATTATATTAAATTTAAATTTAAATGATGTTTGAGTTCAAATAGAATCCTAAATGATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGAGCAGCCGCATCATCATATTTGTATAATTGTTTATGCCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTACACATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATAGTGAATTTATTTATTGTAGATGTGAGCATGAGAAAGAATTATTCCTCTGCAACCATTGCCAAAGCCTCTAAGGACCAATCAACTTGAGGTTTCAAGTGCGCTTGCACGTAAATGGGTGCGACGTAGAAATCATCAAAATAAGGCACGAACTATAATCAGTGTGATTAGGGATATACTAGATAATCTAACTGATGAACAGATATTTAATATTATTAGTATCTTAAACTATTCATATTTTATTTCATTTTAAATACAAATATGTTTGGTAGATCTTTAAATGAGGCACTTATGTTTCACTACCCTAGAAAATTATGTGAATAAAATTGTCACGACCCAAATCGAGCCGCGAGTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCCAAACCCTAACATTTTAACCATAATAGACAGAATACAATGCGGAAGACTTAAAACTCATTAATAAAAATAGATTAATAACTTCTAAAACTCAAACACTTGTTATTATCCCCAAAATCTGGAAGCCATCATCACAAGAACATCTATCCTCAAATTACTAATCTAAGAGTATCTAAGAAGCTAAAATAAGTAAAAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAAATCCGGTGTAATGAAGACTGGCTAGAGTTGCGGTTGAGTTGAAAACGACGGCACGTTTGCTGCACTCCACAAATAATCAAGAAAACAAATACAAGTAGGGGTCAGTACAAGGCACAAGTACTGAGTAGGTATCATCGGCCAACTCAAAATAGAAAACAGTATATATCAGATAATAACATAAAATCAACCATATTCCTCAACAGGTGAAAGCAACAAGTTCACAAATCATGTGTAACCACATCAAACACACCTATGAGAACTCAAGTCTCCACACCATGCTCATTTGGGATATAGGTTCTTTTCATTCGAATTTATTAACATAATTTCAAGATTCATTATCTTTATTCCTCTTGTGTCGGTACGTGACACTCCGCTCCCCTACTACTATGTGCCGAAACGTGACACTCTGATCCCTTAATTCTACGTGTCGATTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCTCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACATGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCACCTAATTCTACGTGTCGGTTCGTGACACCCTCTCCACTAATCTCATTCTATTAATTCATCAAGCCTTATTTTATACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCTTATACCAAGGCATCATCAATCTCATTACTTTAGCTCATCAAGCCTTCTCTTATACCAAGGCATCCTCATTAACAAGGTAAATTTAGGATTAGAGATTCAATAGACTCATCATGCTTATTCATCACAATTATATAATCACATCATGTAAGCACACAATTAAGCATATAGAAGATTTTATAATACTACCCAACACATATCATTCGCTATTAAGAGTCTACTACGAATAGCATAAAAACCATAACCTACCTCCACCGAAGATTCGTGATCAAGCAAGCAATTTCCAAAAGCTTTGTTTCCTCTTCGTTTCACTCTTCTCTCGATTGTTCTCTTTTCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAAGGGCGACTGGGCGCGGAGAATGAAGGAGGGGAGGAAAACCGGTGGGGAGAGAAACGTAGAGGAGAGGGGGGAGATGGGGTTAAGGAGTGGGGGAGATGGGGATTGGGAGGGGATGAGGAGGGAGCGGTGGGTGGAGGTTATGGGGCGGCAGGTTGTGGGCAATGGGAGGGCCTTGTGTGTTATTTCTGGCGGTTGGGCGAGTATATATAGTTAGTTCAGTCGGATTATTGTTATAAACATAAGTGAGACGACGATTTCTCCTGTTCATTTATAGATCCAAGCTGTAGTGAAGAGATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAGGTATGTTAAACAACATCCTATCTCAGCTAAATACCAACTCATGTCTGGATGTAATAAATATCCCTTCCTGAATTTTTTTCAGGCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTGGTGAGCATTTTATTTATTTCATAGCACATTATAAATCATTTACTTTGTCTGTAAGTCAAAATGCTGAATTTTTTTCTGCAACTAGGTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAA</genome_strand>
        <mrna_strand>GACTGTCCTCATTATTGGCGTTATCATCTGCCAG....................................................................................GTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACA.....................................................................................ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCTGTAGTGAAGAAATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAG..................................................................................GCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTG.....................................................................................GTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296498" ref_strand="+" ref_description="SGN-E296498 [cLET-19-C10]">
      <seq>gactgtcctcattattggcgttatcatctgccaggtgagacagaggaggagttctccaccaggttggctaaaaatttagaagatcttatcctcaaagaggggcctgaaacaatagctgcttttattgctgaaccagtcatgggggcaggaggtgtcatacctcctccagctacctattttgataagatccaagctgtagtgaagaaatatgacattcttttcattgcggatgaggtcatctgtgcctttgggaggcttggaacaatgtttggctctgacatgtataacatcaaacctgatcttgtcaccttagcaaaggctctttcttctgcatatatgcctattggagctgtccttgtaagccccgaagtttctgatgtaattcattctcaaagcaataaacttggttccttttcccatggattcacttattctgggcatcctgttgcatgcgcagtggcattggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="11641" stop="20216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11941" g_stop="11974" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12059" g_stop="12135" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="111" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12221" g_stop="12295" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="186" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12296" i_stop="19467" i_length="7172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19468" g_stop="19599" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="318" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19600" i_stop="19681" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19682" g_stop="19769" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="406" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19770" i_stop="19854" i_length="85">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19855" g_stop="19916" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="468" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E296498" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11941" e_stop="11974"/>
          <exon e_start="12059" e_stop="12135"/>
          <exon e_start="12221" e_stop="12295"/>
          <exon e_start="19468" e_stop="19599"/>
          <exon e_start="19682" e_stop="19769"/>
          <exon e_start="19855" e_stop="19916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGTCCTCATTATTGGCGTTATCATCTGCCAGGTTGTTACTTATTCTTAATGACTCTTACTTTTCTCCTCTTCCTATGGTGTAATAAACCATTTTATGTTGAAATGTATATATCAGGTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACAGTAACTTCCATCAACTTTTACTCTTGCTACTCAGTTTGTATATTGAGGGTGATTTATTGCTGATTAATTTGCTTTTTCACCTCAGATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAGGTAGTTTTCTTTGCGTTTTTGTCTGTTCTTTTTATTCCAGAAGGAGGAAGCTATATCACTTTTGCATTACTACTTAGAATGCTGCATGCAATGCTCAATCTAGGATGTAAGAGTTCGTTCTGTAGTTTTGGTGCCAAAGAATGAAGGCAATCAGCTAAGTATTTATTTAAGAAACTCCGAAGTTTGTGCTTACTGTCATTGTCAAAGAAGGGTGTAACTGGTAACCTCTTTCTGTCTGTAAAACCCAAGCATATTTGCATTTGGTTTTACCATGAGATAGAATGAAGATCATCAGCCATTGAGAAATTTGTGGGTAGAATGAGGATCATCAGCCACAAGATATGTGCAATAACAAGTCCTTTTCTTTTATTTCTGGCAGTTTTTGCAGTTATCTATCTTTAGTTCCTTCAAATTATTCTTATATACATAACTAAAACAACGATTTCTCCTTTTCATTTATAAATTCAANCTGTATTGAAAAAATATGACATCCTTTTCATTGCGGATGAAGTCATCTGTGCCTTTGGCAGGCTTGNAACAATGTTTGGTTCTGACATGTATTACATCAAACCTGATTCTGTCACCTTAACAANCTATTTTAACACAAATCCTAACTTANNTTAAATCCAACCCCCTGTCTGCAATGTCAAAAACTATCCCTTCNNNGAATTCCNNNCACNNNNNTTNNNTNNTCNTTATCCNNNNAATTGCANCNNNNNCNNNNCNNNCCCNNNNNNNCNNNNNNNCNTNNNCNNNANCCTNCCANANNTNNTNNNCCANNNNNNCTTCNNNNNNNNNNNNNNNCNTTNNCCNNNNTCTTCCNNNNNNCTCCNCCCCNNNCACNNNNCCNCNAANCCCNNTNNCANNNCCCAACTCTCCCCTATCANNNNCACATANNNNTCCNTATCCNNNNTCNNCNNATTCTCNCACANCTAAACCCATACTCCNTCCACACTACCCCTCNCCTTTCACCCTCNNTAACCATCANTTTCATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATCACAACAACATTATATATTGTTATACATAATAAAATTTAGTTGATATAGTATTAGATGAATTTCAAATTTTAATAAATTCATATTCATTAATTTTTAGATAAAGACCAATTTAATACATTCATATATAAAAATAATCTTAACTATATAGTAATTGGGTCTTAATAGAACATCCTAATATTTAAAACCTATATTTAAAGTCAAATATTAAAAGTTAAATGCACAACTTAATTATATTCAAATATTGACATCTTAATCTTATTAAAAATAAATTATACCTACATGATCTCAAATGATTTCTCATTTTAAAGTCAAAACGTGCTACTGGTACCTTATGGTGAAGGTTGTTATTTGTTAATCTTACCTAATCTTGTATAACTGCACATCCAACATCCACTTCTTTAAAATATTTTCATCTATTATTTATTCTCTTGAAAGAATGAACCTAAACATCTAAATTGTTTGTACTTTGATACCACAATTCAATTTACAACGTTATTTGATCTTCTCATGCTAATTAAACATGTAATGCATATAATCAGTTGTATTTTTACTTTCCATGATTATCTTCTTTTTTAAAGTGCTTTCTATATTTTAAGTTTTTTTTTTCTAATTTTCTATTTTGTACAAGTGTAACAAATTCTAATGAATTGTGGCATTTACAAATTAAAGTTCCACAATTTGATGTAATTTGCAGAGGTTATCACAAACCTCCACAATAAAATCGCTACAAATTATAATAAATTGCAATGTTCACAAAACCTCACAAATTGACGTAATTTGCGAAGATTATCACAAACCTCTACAATAAAACCGTTACAAAATAAATTATATCACAGGAGTTAAAATAAACGCTACAAAATAATTCATAGTCAAATTTTCTAAAAACCCCACAAATAAACCTCTCAAAATTAGCTCGTTTGTTTTTGTGGTTCTTAAGCTAATTTTCTTTGACCTTGGTCTTAGGTATATAAAATAATAATGCCAAAATTGAATTTAATTGGCAGCCTAAAGTTGGCGGTCATTGGGGGATGAATTGACCAATTATATTTATTATTTGAATAAAACTTTCAACTCAAATGTTGAACTATATACTGGTCTAAGTTCAGCTTAGCCGGCCATGATTTAGTCACACCATATTTGTTTACCCATTTTATACAAGTCAACCATCTAATTATTTATTCTTATTAAACATCCATTGATAATTTCCACAAGAGTTAATTAGTATAAATATTCTCAAAAATTAATTTCAACATCATTTTCAGAAAACTTCATCAGAAACTAAATCAAAATTAAAGAAGTTACATATAGTATGGGAGTCAATAATACGATTCAGTCGATTTTAAAAATAAATTCTTTACATATATTATCCTTAAAAAAGTGATACTATATGCTCAATAGTGATATGACATGTTTGGAAATTTTTTAGTTATTATTTCATATGAATGGAATTCAACATGAAGATTTTATAATGTTTTCTAATTTCTAAACTTGACATATAAAATACATATAAATTTATTCAGTTTGTATTAGGTATTAAAATGAAGAAAAATGCTATCCTAATTTCTGGTAAGATATTATGAATTATACATTAAAACATATAATAATATTTACATGAAAAAAATATAATAATCATTCGGCTAGATTCGATATTTTTTTAGAATTGTTTTGACACCCACTACCCAAGTGACATATGAGTTTGCCTCATAGCTTGTTGAAGACAAAGCTAGGGGATTAATTTCACATGTCTAACATGGTGAGTCAAAGATGACAATCCAACTGACCTGGCCACTACATAATTATGACATCATAAAGGTTCAAACAAGAAGGAGGATAATTCGCATTCCTCATAATTCTACACTTTAAATTTTGTATATTTTTGAGCCATCATCACTAATATGTCGAATTCAAATGAACATACTCGATCTTTAACTGTATTATTTCACCAGACATATTACGTCACATATATTTCATAATATTAGTTATTATTCATATTAATTGATGTAAGTCTCGAATTATTGAGTCATGTCAATCTTTTATATATGTGGAGGGGATATATCACATCTTATAATTAATTCTTAATATGTTATAAATGACAATCTATTTCTCAATATTAAACAAATATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTCTCCTTACTAAACCTTTTTAATAACTACACTACGATACTATTGGAGGGGAAGAAAGGATCTTCTATTTTATAAAAGTCCAAAACTTCTTTCCTAAGAAAATGATAGATATATAGGAGTTTTTTTCAAGAAAACTTTTTGATTTAAAACACAATTGTGTAGAATCCAACTAAGGTAGGAAATTCGGTTTAAAGTGATTATGGATTCAACGTTTTAGATGTAACTAGGGAGTGGTGGCACTGGAAACGATAACATGAATTTACGGCACTTTTGTCAAATATGTTGCGATAAATAAATAGTCTATGACAATCTTTGTTTTTTCTACTCACTGCACATTTAATACATCAACTATGGCGAAAAATTTGCTTAATTTCAAGTAAATCATTTTTGTAATTTACCTGGTTTAAAGTTCGGTAAAATATATTTGAATATACTGGCTAAGAAATTCTTATTCTTCTTCCTCATCATCTGTTTGGATTACATCTTATTACAGGTGTCCAATGGCGAGATAGGTCAGACGGAGCACGAAGAGTCTGCTTTTGACGGAGAGTTTATAAAAGTAGAGAAGGAAGCTTTGGAATCAAAGGATGGTTCAGATGCTGCAGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGGAGAAGTTCTAGGTTCAAACCTCAAATAGCACAACGTTTTTCTTTGTTTTATCTTGACGAGTCCGGAGCCTAAAGGGTACAAAATATTAACAAAAATTTCAAAACGACATATAAAATTTTATATTAACCAAAACGGCAAAATCGTTGCATCAACAGCGACTTACTCCATCGAAAAAAGCAAATCGCTGCCTCTGCAGCGATTTTATTTTTTTTAAAAATAAGGTAAATCTTTTTAATTATTATTTTTTAAAAAAAAATATGAAAATCGCTGCCTAGGTAGCGATTTCAGTTTTTTTTTTCAAATGTTAAATCGCTTCCTTGGCAGCGATTTTCATTTTTTTTAAAAAAAAAACTTAAATATGTTAATCGCTCAGCGATTTTATATAAAAAAAAAGAACTGTTTTTTAAAAAGAATGTTCAATCGCTGCGATTTTATTTTTTAAAAAATTTAAATCGCTGCCTTGGCAGCGATTTTATATATAAAGAAATTAAATCGCTGCCTTGGCAGCGATTTTATAAAAAAATTCAAATATATAAATCGCTCAGCGATTTTATATAAAAAAAATTAAAATATGGAAATCGCTGCCTAGGCAGCGATTTTCAATTTTTTTTAAAGCATCGATTTTATAAAAAAATAAAAATTTGTAATATTTTTTGAAATTTAAATATATAGCTTATAAGAAAATATACATGATTTAAAAAAAATTAAGAATAAGTAAGGTAACAAATATATTTTCTTTCTAAAAAAAGATATTATATTAAATTTAAATTTAAATGATGTTTGAGTTCAAATAGAATCCTAAATGATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGAGCAGCCGCATCATCATATTTGTATAATTGTTTATGCCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTACACATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATAGTGAATTTATTTATTGTAGATGTGAGCATGAGAAAGAATTATTCCTCTGCAACCATTGCCAAAGCCTCTAAGGACCAATCAACTTGAGGTTTCAAGTGCGCTTGCACGTAAATGGGTGCGACGTAGAAATCATCAAAATAAGGCACGAACTATAATCAGTGTGATTAGGGATATACTAGATAATCTAACTGATGAACAGATATTTAATATTATTAGTATCTTAAACTATTCATATTTTATTTCATTTTAAATACAAATATGTTTGGTAGATCTTTAAATGAGGCACTTATGTTTCACTACCCTAGAAAATTATGTGAATAAAATTGTCACGACCCAAATCGAGCCGCGAGTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCCAAACCCTAACATTTTAACCATAATAGACAGAATACAATGCGGAAGACTTAAAACTCATTAATAAAAATAGATTAATAACTTCTAAAACTCAAACACTTGTTATTATCCCCAAAATCTGGAAGCCATCATCACAAGAACATCTATCCTCAAATTACTAATCTAAGAGTATCTAAGAAGCTAAAATAAGTAAAAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAAATCCGGTGTAATGAAGACTGGCTAGAGTTGCGGTTGAGTTGAAAACGACGGCACGTTTGCTGCACTCCACAAATAATCAAGAAAACAAATACAAGTAGGGGTCAGTACAAGGCACAAGTACTGAGTAGGTATCATCGGCCAACTCAAAATAGAAAACAGTATATATCAGATAATAACATAAAATCAACCATATTCCTCAACAGGTGAAAGCAACAAGTTCACAAATCATGTGTAACCACATCAAACACACCTATGAGAACTCAAGTCTCCACACCATGCTCATTTGGGATATAGGTTCTTTTCATTCGAATTTATTAACATAATTTCAAGATTCATTATCTTTATTCCTCTTGTGTCGGTACGTGACACTCCGCTCCCCTACTACTATGTGCCGAAACGTGACACTCTGATCCCTTAATTCTACGTGTCGATTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCTCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACATGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCACCTAATTCTACGTGTCGGTTCGTGACACCCTCTCCACTAATCTCATTCTATTAATTCATCAAGCCTTATTTTATACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCTTATACCAAGGCATCATCAATCTCATTACTTTAGCTCATCAAGCCTTCTCTTATACCAAGGCATCCTCATTAACAAGGTAAATTTAGGATTAGAGATTCAATAGACTCATCATGCTTATTCATCACAATTATATAATCACATCATGTAAGCACACAATTAAGCATATAGAAGATTTTATAATACTACCCAACACATATCATTCGCTATTAAGAGTCTACTACGAATAGCATAAAAACCATAACCTACCTCCACCGAAGATTCGTGATCAAGCAAGCAATTTCCAAAAGCTTTGTTTCCTCTTCGTTTCACTCTTCTCTCGATTGTTCTCTTTTCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAAGGGCGACTGGGCGCGGAGAATGAAGGAGGGGAGGAAAACCGGTGGGGAGAGAAACGTAGAGGAGAGGGGGGAGATGGGGTTAAGGAGTGGGGGAGATGGGGATTGGGAGGGGATGAGGAGGGAGCGGTGGGTGGAGGTTATGGGGCGGCAGGTTGTGGGCAATGGGAGGGCCTTGTGTGTTATTTCTGGCGGTTGGGCGAGTATATATAGTTAGTTCAGTCGGATTATTGTTATAAACATAAGTGAGACGACGATTTCTCCTGTTCATTTATAGATCCAAGCTGTAGTGAAGAGATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAGGTATGTTAAACAACATCCTATCTCAGCTAAATACCAACTCATGTCTGGATGTAATAAATATCCCTTCCTGAATTTTTTTCAGGCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTGGTGAGCATTTTATTTATTTCATAGCACATTATAAATCATTTACTTTGTCTGTAAGTCAAAATGCTGAATTTTTTTCTGCAACTAGGTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAA</genome_strand>
        <mrna_strand>GACTGTCCTCATTATTGGCGTTATCATCTGCCAG....................................................................................GTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACA.....................................................................................ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCTGTAGTGAAGAAATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAG..................................................................................GCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTG.....................................................................................GTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248644" ref_strand="+" ref_description="SGN-E248644 [cLEF-58-O18]">
      <seq>gagacagaggaggagttctgcaccaggttggctaaaaatttataagatcttatcctcaaagaggggcctgaaacaatagctgcttttattgctgaaccactcatgggggcaggaggtgtcatacctactgcatctacctattttgataagatccaagctgtactgaataaatatgacattcttttcattgcggatgaagtcatctgtgcctttgggaggcttggaacaatgtttggctctgacatgtataacatcaaacctgatcttgtcaccttaacaaaggctctttcttctgcatatatgcctattggagctgtccttgtaagccccgaagtttctgatgtaattcattctcaaagcaataaacttggttccttttcccatggattcacttattctgggcatcctgttgcatgcgcagtggcattggaagctattaaaatctacaacgagcgaaatatggttgagagagtcaatagaatatccccaaagtttcaagaatgtctgaaggcattttctgacagtcccattatcggagagattaagggacttggtttgatccttgccacatactttgcgaacaacaaatctcctaatgatccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="11761" stop="20655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12061" g_stop="12135" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12221" g_stop="12295" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="150" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12296" i_stop="19467" i_length="7172">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19468" g_stop="19599" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="282" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19600" i_stop="19681" i_length="82">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19682" g_stop="19769" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="370" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19770" i_stop="19854" i_length="85">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19855" g_stop="19933" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="449" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19934" i_stop="20113" i_length="180">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.691" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20114" g_stop="20204" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="540" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20205" i_stop="20290" i_length="86">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20291" g_stop="20355" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="605" r_length="65" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E248644" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12061" e_stop="12135"/>
          <exon e_start="12221" e_stop="12295"/>
          <exon e_start="19468" e_stop="19599"/>
          <exon e_start="19682" e_stop="19769"/>
          <exon e_start="19855" e_stop="19933"/>
          <exon e_start="20114" e_stop="20204"/>
          <exon e_start="20291" e_stop="20355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACAGTAACTTCCATCAACTTTTACTCTTGCTACTCAGTTTGTATATTGAGGGTGATTTATTGCTGATTAATTTGCTTTTTCACCTCAGATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAGGTAGTTTTCTTTGCGTTTTTGTCTGTTCTTTTTATTCCAGAAGGAGGAAGCTATATCACTTTTGCATTACTACTTAGAATGCTGCATGCAATGCTCAATCTAGGATGTAAGAGTTCGTTCTGTAGTTTTGGTGCCAAAGAATGAAGGCAATCAGCTAAGTATTTATTTAAGAAACTCCGAAGTTTGTGCTTACTGTCATTGTCAAAGAAGGGTGTAACTGGTAACCTCTTTCTGTCTGTAAAACCCAAGCATATTTGCATTTGGTTTTACCATGAGATAGAATGAAGATCATCAGCCATTGAGAAATTTGTGGGTAGAATGAGGATCATCAGCCACAAGATATGTGCAATAACAAGTCCTTTTCTTTTATTTCTGGCAGTTTTTGCAGTTATCTATCTTTAGTTCCTTCAAATTATTCTTATATACATAACTAAAACAACGATTTCTCCTTTTCATTTATAAATTCAANCTGTATTGAAAAAATATGACATCCTTTTCATTGCGGATGAAGTCATCTGTGCCTTTGGCAGGCTTGNAACAATGTTTGGTTCTGACATGTATTACATCAAACCTGATTCTGTCACCTTAACAANCTATTTTAACACAAATCCTAACTTANNTTAAATCCAACCCCCTGTCTGCAATGTCAAAAACTATCCCTTCNNNGAATTCCNNNCACNNNNNTTNNNTNNTCNTTATCCNNNNAATTGCANCNNNNNCNNNNCNNNCCCNNNNNNNCNNNNNNNCNTNNNCNNNANCCTNCCANANNTNNTNNNCCANNNNNNCTTCNNNNNNNNNNNNNNNCNTTNNCCNNNNTCTTCCNNNNNNCTCCNCCCCNNNCACNNNNCCNCNAANCCCNNTNNCANNNCCCAACTCTCCCCTATCANNNNCACATANNNNTCCNTATCCNNNNTCNNCNNATTCTCNCACANCTAAACCCATACTCCNTCCACACTACCCCTCNCCTTTCACCCTCNNTAACCATCANTTTCATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATCACAACAACATTATATATTGTTATACATAATAAAATTTAGTTGATATAGTATTAGATGAATTTCAAATTTTAATAAATTCATATTCATTAATTTTTAGATAAAGACCAATTTAATACATTCATATATAAAAATAATCTTAACTATATAGTAATTGGGTCTTAATAGAACATCCTAATATTTAAAACCTATATTTAAAGTCAAATATTAAAAGTTAAATGCACAACTTAATTATATTCAAATATTGACATCTTAATCTTATTAAAAATAAATTATACCTACATGATCTCAAATGATTTCTCATTTTAAAGTCAAAACGTGCTACTGGTACCTTATGGTGAAGGTTGTTATTTGTTAATCTTACCTAATCTTGTATAACTGCACATCCAACATCCACTTCTTTAAAATATTTTCATCTATTATTTATTCTCTTGAAAGAATGAACCTAAACATCTAAATTGTTTGTACTTTGATACCACAATTCAATTTACAACGTTATTTGATCTTCTCATGCTAATTAAACATGTAATGCATATAATCAGTTGTATTTTTACTTTCCATGATTATCTTCTTTTTTAAAGTGCTTTCTATATTTTAAGTTTTTTTTTTCTAATTTTCTATTTTGTACAAGTGTAACAAATTCTAATGAATTGTGGCATTTACAAATTAAAGTTCCACAATTTGATGTAATTTGCAGAGGTTATCACAAACCTCCACAATAAAATCGCTACAAATTATAATAAATTGCAATGTTCACAAAACCTCACAAATTGACGTAATTTGCGAAGATTATCACAAACCTCTACAATAAAACCGTTACAAAATAAATTATATCACAGGAGTTAAAATAAACGCTACAAAATAATTCATAGTCAAATTTTCTAAAAACCCCACAAATAAACCTCTCAAAATTAGCTCGTTTGTTTTTGTGGTTCTTAAGCTAATTTTCTTTGACCTTGGTCTTAGGTATATAAAATAATAATGCCAAAATTGAATTTAATTGGCAGCCTAAAGTTGGCGGTCATTGGGGGATGAATTGACCAATTATATTTATTATTTGAATAAAACTTTCAACTCAAATGTTGAACTATATACTGGTCTAAGTTCAGCTTAGCCGGCCATGATTTAGTCACACCATATTTGTTTACCCATTTTATACAAGTCAACCATCTAATTATTTATTCTTATTAAACATCCATTGATAATTTCCACAAGAGTTAATTAGTATAAATATTCTCAAAAATTAATTTCAACATCATTTTCAGAAAACTTCATCAGAAACTAAATCAAAATTAAAGAAGTTACATATAGTATGGGAGTCAATAATACGATTCAGTCGATTTTAAAAATAAATTCTTTACATATATTATCCTTAAAAAAGTGATACTATATGCTCAATAGTGATATGACATGTTTGGAAATTTTTTAGTTATTATTTCATATGAATGGAATTCAACATGAAGATTTTATAATGTTTTCTAATTTCTAAACTTGACATATAAAATACATATAAATTTATTCAGTTTGTATTAGGTATTAAAATGAAGAAAAATGCTATCCTAATTTCTGGTAAGATATTATGAATTATACATTAAAACATATAATAATATTTACATGAAAAAAATATAATAATCATTCGGCTAGATTCGATATTTTTTTAGAATTGTTTTGACACCCACTACCCAAGTGACATATGAGTTTGCCTCATAGCTTGTTGAAGACAAAGCTAGGGGATTAATTTCACATGTCTAACATGGTGAGTCAAAGATGACAATCCAACTGACCTGGCCACTACATAATTATGACATCATAAAGGTTCAAACAAGAAGGAGGATAATTCGCATTCCTCATAATTCTACACTTTAAATTTTGTATATTTTTGAGCCATCATCACTAATATGTCGAATTCAAATGAACATACTCGATCTTTAACTGTATTATTTCACCAGACATATTACGTCACATATATTTCATAATATTAGTTATTATTCATATTAATTGATGTAAGTCTCGAATTATTGAGTCATGTCAATCTTTTATATATGTGGAGGGGATATATCACATCTTATAATTAATTCTTAATATGTTATAAATGACAATCTATTTCTCAATATTAAACAAATATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTCTCCTTACTAAACCTTTTTAATAACTACACTACGATACTATTGGAGGGGAAGAAAGGATCTTCTATTTTATAAAAGTCCAAAACTTCTTTCCTAAGAAAATGATAGATATATAGGAGTTTTTTTCAAGAAAACTTTTTGATTTAAAACACAATTGTGTAGAATCCAACTAAGGTAGGAAATTCGGTTTAAAGTGATTATGGATTCAACGTTTTAGATGTAACTAGGGAGTGGTGGCACTGGAAACGATAACATGAATTTACGGCACTTTTGTCAAATATGTTGCGATAAATAAATAGTCTATGACAATCTTTGTTTTTTCTACTCACTGCACATTTAATACATCAACTATGGCGAAAAATTTGCTTAATTTCAAGTAAATCATTTTTGTAATTTACCTGGTTTAAAGTTCGGTAAAATATATTTGAATATACTGGCTAAGAAATTCTTATTCTTCTTCCTCATCATCTGTTTGGATTACATCTTATTACAGGTGTCCAATGGCGAGATAGGTCAGACGGAGCACGAAGAGTCTGCTTTTGACGGAGAGTTTATAAAAGTAGAGAAGGAAGCTTTGGAATCAAAGGATGGTTCAGATGCTGCAGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGGAGAAGTTCTAGGTTCAAACCTCAAATAGCACAACGTTTTTCTTTGTTTTATCTTGACGAGTCCGGAGCCTAAAGGGTACAAAATATTAACAAAAATTTCAAAACGACATATAAAATTTTATATTAACCAAAACGGCAAAATCGTTGCATCAACAGCGACTTACTCCATCGAAAAAAGCAAATCGCTGCCTCTGCAGCGATTTTATTTTTTTTAAAAATAAGGTAAATCTTTTTAATTATTATTTTTTAAAAAAAAATATGAAAATCGCTGCCTAGGTAGCGATTTCAGTTTTTTTTTTCAAATGTTAAATCGCTTCCTTGGCAGCGATTTTCATTTTTTTTAAAAAAAAAACTTAAATATGTTAATCGCTCAGCGATTTTATATAAAAAAAAAGAACTGTTTTTTAAAAAGAATGTTCAATCGCTGCGATTTTATTTTTTAAAAAATTTAAATCGCTGCCTTGGCAGCGATTTTATATATAAAGAAATTAAATCGCTGCCTTGGCAGCGATTTTATAAAAAAATTCAAATATATAAATCGCTCAGCGATTTTATATAAAAAAAATTAAAATATGGAAATCGCTGCCTAGGCAGCGATTTTCAATTTTTTTTAAAGCATCGATTTTATAAAAAAATAAAAATTTGTAATATTTTTTGAAATTTAAATATATAGCTTATAAGAAAATATACATGATTTAAAAAAAATTAAGAATAAGTAAGGTAACAAATATATTTTCTTTCTAAAAAAAGATATTATATTAAATTTAAATTTAAATGATGTTTGAGTTCAAATAGAATCCTAAATGATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGAGCAGCCGCATCATCATATTTGTATAATTGTTTATGCCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTACACATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATAGTGAATTTATTTATTGTAGATGTGAGCATGAGAAAGAATTATTCCTCTGCAACCATTGCCAAAGCCTCTAAGGACCAATCAACTTGAGGTTTCAAGTGCGCTTGCACGTAAATGGGTGCGACGTAGAAATCATCAAAATAAGGCACGAACTATAATCAGTGTGATTAGGGATATACTAGATAATCTAACTGATGAACAGATATTTAATATTATTAGTATCTTAAACTATTCATATTTTATTTCATTTTAAATACAAATATGTTTGGTAGATCTTTAAATGAGGCACTTATGTTTCACTACCCTAGAAAATTATGTGAATAAAATTGTCACGACCCAAATCGAGCCGCGAGTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCCAAACCCTAACATTTTAACCATAATAGACAGAATACAATGCGGAAGACTTAAAACTCATTAATAAAAATAGATTAATAACTTCTAAAACTCAAACACTTGTTATTATCCCCAAAATCTGGAAGCCATCATCACAAGAACATCTATCCTCAAATTACTAATCTAAGAGTATCTAAGAAGCTAAAATAAGTAAAAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAAATCCGGTGTAATGAAGACTGGCTAGAGTTGCGGTTGAGTTGAAAACGACGGCACGTTTGCTGCACTCCACAAATAATCAAGAAAACAAATACAAGTAGGGGTCAGTACAAGGCACAAGTACTGAGTAGGTATCATCGGCCAACTCAAAATAGAAAACAGTATATATCAGATAATAACATAAAATCAACCATATTCCTCAACAGGTGAAAGCAACAAGTTCACAAATCATGTGTAACCACATCAAACACACCTATGAGAACTCAAGTCTCCACACCATGCTCATTTGGGATATAGGTTCTTTTCATTCGAATTTATTAACATAATTTCAAGATTCATTATCTTTATTCCTCTTGTGTCGGTACGTGACACTCCGCTCCCCTACTACTATGTGCCGAAACGTGACACTCTGATCCCTTAATTCTACGTGTCGATTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCTCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACATGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCACCTAATTCTACGTGTCGGTTCGTGACACCCTCTCCACTAATCTCATTCTATTAATTCATCAAGCCTTATTTTATACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCTTATACCAAGGCATCATCAATCTCATTACTTTAGCTCATCAAGCCTTCTCTTATACCAAGGCATCCTCATTAACAAGGTAAATTTAGGATTAGAGATTCAATAGACTCATCATGCTTATTCATCACAATTATATAATCACATCATGTAAGCACACAATTAAGCATATAGAAGATTTTATAATACTACCCAACACATATCATTCGCTATTAAGAGTCTACTACGAATAGCATAAAAACCATAACCTACCTCCACCGAAGATTCGTGATCAAGCAAGCAATTTCCAAAAGCTTTGTTTCCTCTTCGTTTCACTCTTCTCTCGATTGTTCTCTTTTCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAAGGGCGACTGGGCGCGGAGAATGAAGGAGGGGAGGAAAACCGGTGGGGAGAGAAACGTAGAGGAGAGGGGGGAGATGGGGTTAAGGAGTGGGGGAGATGGGGATTGGGAGGGGATGAGGAGGGAGCGGTGGGTGGAGGTTATGGGGCGGCAGGTTGTGGGCAATGGGAGGGCCTTGTGTGTTATTTCTGGCGGTTGGGCGAGTATATATAGTTAGTTCAGTCGGATTATTGTTATAAACATAAGTGAGACGACGATTTCTCCTGTTCATTTATAGATCCAAGCTGTAGTGAAGAGATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAGGTATGTTAAACAACATCCTATCTCAGCTAAATACCAACTCATGTCTGGATGTAATAAATATCCCTTCCTGAATTTTTTTCAGGCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTGGTGAGCATTTTATTTATTTCATAGCACATTATAAATCATTTACTTTGTCTGTAAGTCAAAATGCTGAATTTTTTTCTGCAACTAGGTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAAGTATGTAGGCTTGAATTGCCTTTCGACTTCCTTTTATGATCATGTGCTTTTCATTCTTTATCCTCATTGCAACTTCCATATGGTTACTTTAGTATTATGATTGCTGATAACTCTGCATTTTAGTTTATGGGCTTGATACCTATTGTACTTAGCTAGTGCTGAAGATACAAATTATTTCAGGGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAGGTACAACTCTTATCACTTGTATAAAAGTGATTAAAACTTTATAAAAGGTTTTGCTATTCATTTTCTTCACTCTTATTTTCCTGTAGATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCCTAATGATCCTTT</genome_strand>
        <mrna_strand>GAGACAGAGGAGGAGTTCTGCACCAGGTTGGCTAAAAATTTATAAGATCTTATCCTCAAAGAGGGGCCTGAAACA.....................................................................................ATAGCTGCTTTTATTGCTGAACCACTCATGGGGGCAGGAGGTGTCATACCTACTGCATCTACCTATTTTGATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCTGTACTGAATAAATATGACATTCTTTTCATTGCGGATGAAGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAACAAAG..................................................................................GCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTG.....................................................................................GTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAA....................................................................................................................................................................................CGAGCGAAATATGGTTGAGAGAGTCAATAGAATATCCCCAAAGTTTCAAGAATGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAG......................................................................................ATTAAGGGACTTGGTTTGATCCTTGCCACATACTTTGCGAACAACAAATCTCCTAATGATCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214836" ref_strand="+" ref_description="SGN-E214836 [cLEC-78-C17]">
      <seq>agatcttatcctcaaagaggggcctgaaacaatagctgcttttattgctgaaccagtcatgggggcaggaggtgtcatacctcctccagctacctattttgataagatccaagctgtagtgaagaaatatgacattcttttcattgcggatgaggtcatctgtgcctttgggaggcttggaacaatgtttggctctgacatgtataacatcaaacctgatcttgtcaccttagcaaaggctctttcttctgcatatatgcctattggagctgtccttgtaagccccgaagtttctgatgtaattcattctcaaagcaataaacttggttccttttcccatggattcacttattctgggcatcctgttgcatgcgcagtggcattggaagctattaaaatctacaaggagcgaaatatggttgagagagtaaatagaatatccccaaagtttcaagaaggtctgaaggcattttctgacagtcccattatcggagagattangggacttggtttgatccttgccacagagtttgcgaacaacaaatctcctaatgatcctttccctcccgaatggggtgttggtgcatattttggagcgcaatgtcagaagaatggcatgttggtacgagttgctggtgataccatcatgatgtctcctccatttgtagttactccagaagaaacttgacgagtgattagaatctatgggaaagcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="11805" stop="21033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12105" g_stop="12135" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12221" g_stop="12295" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="106" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12296" i_stop="19467" i_length="7172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19468" g_stop="19599" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="238" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19600" i_stop="19681" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19682" g_stop="19769" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="326" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19770" i_stop="19854" i_length="85">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19855" g_stop="19933" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="405" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19934" i_stop="20113" i_length="180">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.691" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20114" g_stop="20204" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="496" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20205" i_stop="20290" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20291" g_stop="20369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="575" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20370" i_stop="20451" i_length="82">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20452" g_stop="20567" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="692" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="20568" i_stop="20707" i_length="140">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20708" g_stop="20733" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="717" r_length="25" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E214836" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12105" e_stop="12135"/>
          <exon e_start="12221" e_stop="12295"/>
          <exon e_start="19468" e_stop="19599"/>
          <exon e_start="19682" e_stop="19769"/>
          <exon e_start="19855" e_stop="19933"/>
          <exon e_start="20114" e_stop="20204"/>
          <exon e_start="20291" e_stop="20369"/>
          <exon e_start="20452" e_stop="20567"/>
          <exon e_start="20708" e_stop="20733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCTTATCCTCAAAGAGGGGCCTGAAACAGTAACTTCCATCAACTTTTACTCTTGCTACTCAGTTTGTATATTGAGGGTGATTTATTGCTGATTAATTTGCTTTTTCACCTCAGATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAGGTAGTTTTCTTTGCGTTTTTGTCTGTTCTTTTTATTCCAGAAGGAGGAAGCTATATCACTTTTGCATTACTACTTAGAATGCTGCATGCAATGCTCAATCTAGGATGTAAGAGTTCGTTCTGTAGTTTTGGTGCCAAAGAATGAAGGCAATCAGCTAAGTATTTATTTAAGAAACTCCGAAGTTTGTGCTTACTGTCATTGTCAAAGAAGGGTGTAACTGGTAACCTCTTTCTGTCTGTAAAACCCAAGCATATTTGCATTTGGTTTTACCATGAGATAGAATGAAGATCATCAGCCATTGAGAAATTTGTGGGTAGAATGAGGATCATCAGCCACAAGATATGTGCAATAACAAGTCCTTTTCTTTTATTTCTGGCAGTTTTTGCAGTTATCTATCTTTAGTTCCTTCAAATTATTCTTATATACATAACTAAAACAACGATTTCTCCTTTTCATTTATAAATTCAANCTGTATTGAAAAAATATGACATCCTTTTCATTGCGGATGAAGTCATCTGTGCCTTTGGCAGGCTTGNAACAATGTTTGGTTCTGACATGTATTACATCAAACCTGATTCTGTCACCTTAACAANCTATTTTAACACAAATCCTAACTTANNTTAAATCCAACCCCCTGTCTGCAATGTCAAAAACTATCCCTTCNNNGAATTCCNNNCACNNNNNTTNNNTNNTCNTTATCCNNNNAATTGCANCNNNNNCNNNNCNNNCCCNNNNNNNCNNNNNNNCNTNNNCNNNANCCTNCCANANNTNNTNNNCCANNNNNNCTTCNNNNNNNNNNNNNNNCNTTNNCCNNNNTCTTCCNNNNNNCTCCNCCCCNNNCACNNNNCCNCNAANCCCNNTNNCANNNCCCAACTCTCCCCTATCANNNNCACATANNNNTCCNTATCCNNNNTCNNCNNATTCTCNCACANCTAAACCCATACTCCNTCCACACTACCCCTCNCCTTTCACCCTCNNTAACCATCANTTTCATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATCACAACAACATTATATATTGTTATACATAATAAAATTTAGTTGATATAGTATTAGATGAATTTCAAATTTTAATAAATTCATATTCATTAATTTTTAGATAAAGACCAATTTAATACATTCATATATAAAAATAATCTTAACTATATAGTAATTGGGTCTTAATAGAACATCCTAATATTTAAAACCTATATTTAAAGTCAAATATTAAAAGTTAAATGCACAACTTAATTATATTCAAATATTGACATCTTAATCTTATTAAAAATAAATTATACCTACATGATCTCAAATGATTTCTCATTTTAAAGTCAAAACGTGCTACTGGTACCTTATGGTGAAGGTTGTTATTTGTTAATCTTACCTAATCTTGTATAACTGCACATCCAACATCCACTTCTTTAAAATATTTTCATCTATTATTTATTCTCTTGAAAGAATGAACCTAAACATCTAAATTGTTTGTACTTTGATACCACAATTCAATTTACAACGTTATTTGATCTTCTCATGCTAATTAAACATGTAATGCATATAATCAGTTGTATTTTTACTTTCCATGATTATCTTCTTTTTTAAAGTGCTTTCTATATTTTAAGTTTTTTTTTTCTAATTTTCTATTTTGTACAAGTGTAACAAATTCTAATGAATTGTGGCATTTACAAATTAAAGTTCCACAATTTGATGTAATTTGCAGAGGTTATCACAAACCTCCACAATAAAATCGCTACAAATTATAATAAATTGCAATGTTCACAAAACCTCACAAATTGACGTAATTTGCGAAGATTATCACAAACCTCTACAATAAAACCGTTACAAAATAAATTATATCACAGGAGTTAAAATAAACGCTACAAAATAATTCATAGTCAAATTTTCTAAAAACCCCACAAATAAACCTCTCAAAATTAGCTCGTTTGTTTTTGTGGTTCTTAAGCTAATTTTCTTTGACCTTGGTCTTAGGTATATAAAATAATAATGCCAAAATTGAATTTAATTGGCAGCCTAAAGTTGGCGGTCATTGGGGGATGAATTGACCAATTATATTTATTATTTGAATAAAACTTTCAACTCAAATGTTGAACTATATACTGGTCTAAGTTCAGCTTAGCCGGCCATGATTTAGTCACACCATATTTGTTTACCCATTTTATACAAGTCAACCATCTAATTATTTATTCTTATTAAACATCCATTGATAATTTCCACAAGAGTTAATTAGTATAAATATTCTCAAAAATTAATTTCAACATCATTTTCAGAAAACTTCATCAGAAACTAAATCAAAATTAAAGAAGTTACATATAGTATGGGAGTCAATAATACGATTCAGTCGATTTTAAAAATAAATTCTTTACATATATTATCCTTAAAAAAGTGATACTATATGCTCAATAGTGATATGACATGTTTGGAAATTTTTTAGTTATTATTTCATATGAATGGAATTCAACATGAAGATTTTATAATGTTTTCTAATTTCTAAACTTGACATATAAAATACATATAAATTTATTCAGTTTGTATTAGGTATTAAAATGAAGAAAAATGCTATCCTAATTTCTGGTAAGATATTATGAATTATACATTAAAACATATAATAATATTTACATGAAAAAAATATAATAATCATTCGGCTAGATTCGATATTTTTTTAGAATTGTTTTGACACCCACTACCCAAGTGACATATGAGTTTGCCTCATAGCTTGTTGAAGACAAAGCTAGGGGATTAATTTCACATGTCTAACATGGTGAGTCAAAGATGACAATCCAACTGACCTGGCCACTACATAATTATGACATCATAAAGGTTCAAACAAGAAGGAGGATAATTCGCATTCCTCATAATTCTACACTTTAAATTTTGTATATTTTTGAGCCATCATCACTAATATGTCGAATTCAAATGAACATACTCGATCTTTAACTGTATTATTTCACCAGACATATTACGTCACATATATTTCATAATATTAGTTATTATTCATATTAATTGATGTAAGTCTCGAATTATTGAGTCATGTCAATCTTTTATATATGTGGAGGGGATATATCACATCTTATAATTAATTCTTAATATGTTATAAATGACAATCTATTTCTCAATATTAAACAAATATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTCTCCTTACTAAACCTTTTTAATAACTACACTACGATACTATTGGAGGGGAAGAAAGGATCTTCTATTTTATAAAAGTCCAAAACTTCTTTCCTAAGAAAATGATAGATATATAGGAGTTTTTTTCAAGAAAACTTTTTGATTTAAAACACAATTGTGTAGAATCCAACTAAGGTAGGAAATTCGGTTTAAAGTGATTATGGATTCAACGTTTTAGATGTAACTAGGGAGTGGTGGCACTGGAAACGATAACATGAATTTACGGCACTTTTGTCAAATATGTTGCGATAAATAAATAGTCTATGACAATCTTTGTTTTTTCTACTCACTGCACATTTAATACATCAACTATGGCGAAAAATTTGCTTAATTTCAAGTAAATCATTTTTGTAATTTACCTGGTTTAAAGTTCGGTAAAATATATTTGAATATACTGGCTAAGAAATTCTTATTCTTCTTCCTCATCATCTGTTTGGATTACATCTTATTACAGGTGTCCAATGGCGAGATAGGTCAGACGGAGCACGAAGAGTCTGCTTTTGACGGAGAGTTTATAAAAGTAGAGAAGGAAGCTTTGGAATCAAAGGATGGTTCAGATGCTGCAGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGGAGAAGTTCTAGGTTCAAACCTCAAATAGCACAACGTTTTTCTTTGTTTTATCTTGACGAGTCCGGAGCCTAAAGGGTACAAAATATTAACAAAAATTTCAAAACGACATATAAAATTTTATATTAACCAAAACGGCAAAATCGTTGCATCAACAGCGACTTACTCCATCGAAAAAAGCAAATCGCTGCCTCTGCAGCGATTTTATTTTTTTTAAAAATAAGGTAAATCTTTTTAATTATTATTTTTTAAAAAAAAATATGAAAATCGCTGCCTAGGTAGCGATTTCAGTTTTTTTTTTCAAATGTTAAATCGCTTCCTTGGCAGCGATTTTCATTTTTTTTAAAAAAAAAACTTAAATATGTTAATCGCTCAGCGATTTTATATAAAAAAAAAGAACTGTTTTTTAAAAAGAATGTTCAATCGCTGCGATTTTATTTTTTAAAAAATTTAAATCGCTGCCTTGGCAGCGATTTTATATATAAAGAAATTAAATCGCTGCCTTGGCAGCGATTTTATAAAAAAATTCAAATATATAAATCGCTCAGCGATTTTATATAAAAAAAATTAAAATATGGAAATCGCTGCCTAGGCAGCGATTTTCAATTTTTTTTAAAGCATCGATTTTATAAAAAAATAAAAATTTGTAATATTTTTTGAAATTTAAATATATAGCTTATAAGAAAATATACATGATTTAAAAAAAATTAAGAATAAGTAAGGTAACAAATATATTTTCTTTCTAAAAAAAGATATTATATTAAATTTAAATTTAAATGATGTTTGAGTTCAAATAGAATCCTAAATGATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGAGCAGCCGCATCATCATATTTGTATAATTGTTTATGCCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTACACATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATAGTGAATTTATTTATTGTAGATGTGAGCATGAGAAAGAATTATTCCTCTGCAACCATTGCCAAAGCCTCTAAGGACCAATCAACTTGAGGTTTCAAGTGCGCTTGCACGTAAATGGGTGCGACGTAGAAATCATCAAAATAAGGCACGAACTATAATCAGTGTGATTAGGGATATACTAGATAATCTAACTGATGAACAGATATTTAATATTATTAGTATCTTAAACTATTCATATTTTATTTCATTTTAAATACAAATATGTTTGGTAGATCTTTAAATGAGGCACTTATGTTTCACTACCCTAGAAAATTATGTGAATAAAATTGTCACGACCCAAATCGAGCCGCGAGTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCCAAACCCTAACATTTTAACCATAATAGACAGAATACAATGCGGAAGACTTAAAACTCATTAATAAAAATAGATTAATAACTTCTAAAACTCAAACACTTGTTATTATCCCCAAAATCTGGAAGCCATCATCACAAGAACATCTATCCTCAAATTACTAATCTAAGAGTATCTAAGAAGCTAAAATAAGTAAAAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAAATCCGGTGTAATGAAGACTGGCTAGAGTTGCGGTTGAGTTGAAAACGACGGCACGTTTGCTGCACTCCACAAATAATCAAGAAAACAAATACAAGTAGGGGTCAGTACAAGGCACAAGTACTGAGTAGGTATCATCGGCCAACTCAAAATAGAAAACAGTATATATCAGATAATAACATAAAATCAACCATATTCCTCAACAGGTGAAAGCAACAAGTTCACAAATCATGTGTAACCACATCAAACACACCTATGAGAACTCAAGTCTCCACACCATGCTCATTTGGGATATAGGTTCTTTTCATTCGAATTTATTAACATAATTTCAAGATTCATTATCTTTATTCCTCTTGTGTCGGTACGTGACACTCCGCTCCCCTACTACTATGTGCCGAAACGTGACACTCTGATCCCTTAATTCTACGTGTCGATTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCTCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACATGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCACCTAATTCTACGTGTCGGTTCGTGACACCCTCTCCACTAATCTCATTCTATTAATTCATCAAGCCTTATTTTATACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCTTATACCAAGGCATCATCAATCTCATTACTTTAGCTCATCAAGCCTTCTCTTATACCAAGGCATCCTCATTAACAAGGTAAATTTAGGATTAGAGATTCAATAGACTCATCATGCTTATTCATCACAATTATATAATCACATCATGTAAGCACACAATTAAGCATATAGAAGATTTTATAATACTACCCAACACATATCATTCGCTATTAAGAGTCTACTACGAATAGCATAAAAACCATAACCTACCTCCACCGAAGATTCGTGATCAAGCAAGCAATTTCCAAAAGCTTTGTTTCCTCTTCGTTTCACTCTTCTCTCGATTGTTCTCTTTTCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAAGGGCGACTGGGCGCGGAGAATGAAGGAGGGGAGGAAAACCGGTGGGGAGAGAAACGTAGAGGAGAGGGGGGAGATGGGGTTAAGGAGTGGGGGAGATGGGGATTGGGAGGGGATGAGGAGGGAGCGGTGGGTGGAGGTTATGGGGCGGCAGGTTGTGGGCAATGGGAGGGCCTTGTGTGTTATTTCTGGCGGTTGGGCGAGTATATATAGTTAGTTCAGTCGGATTATTGTTATAAACATAAGTGAGACGACGATTTCTCCTGTTCATTTATAGATCCAAGCTGTAGTGAAGAGATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAGGTATGTTAAACAACATCCTATCTCAGCTAAATACCAACTCATGTCTGGATGTAATAAATATCCCTTCCTGAATTTTTTTCAGGCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTGGTGAGCATTTTATTTATTTCATAGCACATTATAAATCATTTACTTTGTCTGTAAGTCAAAATGCTGAATTTTTTTCTGCAACTAGGTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAAGTATGTAGGCTTGAATTGCCTTTCGACTTCCTTTTATGATCATGTGCTTTTCATTCTTTATCCTCATTGCAACTTCCATATGGTTACTTTAGTATTATGATTGCTGATAACTCTGCATTTTAGTTTATGGGCTTGATACCTATTGTACTTAGCTAGTGCTGAAGATACAAATTATTTCAGGGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAGGTACAACTCTTATCACTTGTATAAAAGTGATTAAAACTTTATAAAAGGTTTTGCTATTCATTTTCTTCACTCTTATTTTCCTGTAGATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCCTAATGATCCTTTCCCTCCCGAATGGGGTGCGTAATTTTCCTCATTTGCTCTTCAATTGGAGGTCATATTAAACTCTTATTTCATTCAATCGTCTCATTGCCGCCTCAGGTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAG-AACTTGACGAGGTATGTTTATGGCTTGCATTTATAAATGCATATATGTGTGTGTGTTTTTGCCAGAAATTGCTTTGAGGCCTTACTTTTGTGAATTCATGTTCTGCAAGTCTGATAACCAATTTTTGTGAAAATATTTTCCTTTTGTTCAGTTGATTAGAATCTATGGGAAAGCATT</genome_strand>
        <mrna_strand>AGATCTTATCCTCAAAGAGGGGCCTGAAACA.....................................................................................ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254042" ref_strand="+" ref_description="SGN-E254042 [cLEG-34-I20]">
      <seq>atagctgcttttattgctgaaccagtcatgggggcaggaagtgtcatacctcctccagctacctattttgataagaaccaagctgtagtgaagaaatatgacattcttttcattgcggatgaagtcatctgtgcctttgggaagcttggaacaatgtttggctctgacatgtataacatcaaacctgatcttgtcaccttagcaaaggctctttcttctgcatatatgcctattggagctgtccttgtaagccccgaagtttctgatgtaattcattctcaaagcaataaacttggttccttttcccatggattcacttattctgggcatcctgttgcatgcgcagtggcattggaagctattaaaatctacaaagagcgaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="11921" stop="20233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12221" g_stop="12295" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12296" i_stop="19467" i_length="7172">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19468" g_stop="19599" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="207" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19600" i_stop="19681" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19682" g_stop="19769" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="295" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19770" i_stop="19854" i_length="85">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19855" g_stop="19933" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="374" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19934" i_stop="20113" i_length="180">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.691" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20114" g_stop="20124" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="385" r_length="11" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E254042" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12221" e_stop="12295"/>
          <exon e_start="19468" e_stop="19599"/>
          <exon e_start="19682" e_stop="19769"/>
          <exon e_start="19855" e_stop="19933"/>
          <exon e_start="20114" e_stop="20124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAGGTAGTTTTCTTTGCGTTTTTGTCTGTTCTTTTTATTCCAGAAGGAGGAAGCTATATCACTTTTGCATTACTACTTAGAATGCTGCATGCAATGCTCAATCTAGGATGTAAGAGTTCGTTCTGTAGTTTTGGTGCCAAAGAATGAAGGCAATCAGCTAAGTATTTATTTAAGAAACTCCGAAGTTTGTGCTTACTGTCATTGTCAAAGAAGGGTGTAACTGGTAACCTCTTTCTGTCTGTAAAACCCAAGCATATTTGCATTTGGTTTTACCATGAGATAGAATGAAGATCATCAGCCATTGAGAAATTTGTGGGTAGAATGAGGATCATCAGCCACAAGATATGTGCAATAACAAGTCCTTTTCTTTTATTTCTGGCAGTTTTTGCAGTTATCTATCTTTAGTTCCTTCAAATTATTCTTATATACATAACTAAAACAACGATTTCTCCTTTTCATTTATAAATTCAANCTGTATTGAAAAAATATGACATCCTTTTCATTGCGGATGAAGTCATCTGTGCCTTTGGCAGGCTTGNAACAATGTTTGGTTCTGACATGTATTACATCAAACCTGATTCTGTCACCTTAACAANCTATTTTAACACAAATCCTAACTTANNTTAAATCCAACCCCCTGTCTGCAATGTCAAAAACTATCCCTTCNNNGAATTCCNNNCACNNNNNTTNNNTNNTCNTTATCCNNNNAATTGCANCNNNNNCNNNNCNNNCCCNNNNNNNCNNNNNNNCNTNNNCNNNANCCTNCCANANNTNNTNNNCCANNNNNNCTTCNNNNNNNNNNNNNNNCNTTNNCCNNNNTCTTCCNNNNNNCTCCNCCCCNNNCACNNNNCCNCNAANCCCNNTNNCANNNCCCAACTCTCCCCTATCANNNNCACATANNNNTCCNTATCCNNNNTCNNCNNATTCTCNCACANCTAAACCCATACTCCNTCCACACTACCCCTCNCCTTTCACCCTCNNTAACCATCANTTTCATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATCACAACAACATTATATATTGTTATACATAATAAAATTTAGTTGATATAGTATTAGATGAATTTCAAATTTTAATAAATTCATATTCATTAATTTTTAGATAAAGACCAATTTAATACATTCATATATAAAAATAATCTTAACTATATAGTAATTGGGTCTTAATAGAACATCCTAATATTTAAAACCTATATTTAAAGTCAAATATTAAAAGTTAAATGCACAACTTAATTATATTCAAATATTGACATCTTAATCTTATTAAAAATAAATTATACCTACATGATCTCAAATGATTTCTCATTTTAAAGTCAAAACGTGCTACTGGTACCTTATGGTGAAGGTTGTTATTTGTTAATCTTACCTAATCTTGTATAACTGCACATCCAACATCCACTTCTTTAAAATATTTTCATCTATTATTTATTCTCTTGAAAGAATGAACCTAAACATCTAAATTGTTTGTACTTTGATACCACAATTCAATTTACAACGTTATTTGATCTTCTCATGCTAATTAAACATGTAATGCATATAATCAGTTGTATTTTTACTTTCCATGATTATCTTCTTTTTTAAAGTGCTTTCTATATTTTAAGTTTTTTTTTTCTAATTTTCTATTTTGTACAAGTGTAACAAATTCTAATGAATTGTGGCATTTACAAATTAAAGTTCCACAATTTGATGTAATTTGCAGAGGTTATCACAAACCTCCACAATAAAATCGCTACAAATTATAATAAATTGCAATGTTCACAAAACCTCACAAATTGACGTAATTTGCGAAGATTATCACAAACCTCTACAATAAAACCGTTACAAAATAAATTATATCACAGGAGTTAAAATAAACGCTACAAAATAATTCATAGTCAAATTTTCTAAAAACCCCACAAATAAACCTCTCAAAATTAGCTCGTTTGTTTTTGTGGTTCTTAAGCTAATTTTCTTTGACCTTGGTCTTAGGTATATAAAATAATAATGCCAAAATTGAATTTAATTGGCAGCCTAAAGTTGGCGGTCATTGGGGGATGAATTGACCAATTATATTTATTATTTGAATAAAACTTTCAACTCAAATGTTGAACTATATACTGGTCTAAGTTCAGCTTAGCCGGCCATGATTTAGTCACACCATATTTGTTTACCCATTTTATACAAGTCAACCATCTAATTATTTATTCTTATTAAACATCCATTGATAATTTCCACAAGAGTTAATTAGTATAAATATTCTCAAAAATTAATTTCAACATCATTTTCAGAAAACTTCATCAGAAACTAAATCAAAATTAAAGAAGTTACATATAGTATGGGAGTCAATAATACGATTCAGTCGATTTTAAAAATAAATTCTTTACATATATTATCCTTAAAAAAGTGATACTATATGCTCAATAGTGATATGACATGTTTGGAAATTTTTTAGTTATTATTTCATATGAATGGAATTCAACATGAAGATTTTATAATGTTTTCTAATTTCTAAACTTGACATATAAAATACATATAAATTTATTCAGTTTGTATTAGGTATTAAAATGAAGAAAAATGCTATCCTAATTTCTGGTAAGATATTATGAATTATACATTAAAACATATAATAATATTTACATGAAAAAAATATAATAATCATTCGGCTAGATTCGATATTTTTTTAGAATTGTTTTGACACCCACTACCCAAGTGACATATGAGTTTGCCTCATAGCTTGTTGAAGACAAAGCTAGGGGATTAATTTCACATGTCTAACATGGTGAGTCAAAGATGACAATCCAACTGACCTGGCCACTACATAATTATGACATCATAAAGGTTCAAACAAGAAGGAGGATAATTCGCATTCCTCATAATTCTACACTTTAAATTTTGTATATTTTTGAGCCATCATCACTAATATGTCGAATTCAAATGAACATACTCGATCTTTAACTGTATTATTTCACCAGACATATTACGTCACATATATTTCATAATATTAGTTATTATTCATATTAATTGATGTAAGTCTCGAATTATTGAGTCATGTCAATCTTTTATATATGTGGAGGGGATATATCACATCTTATAATTAATTCTTAATATGTTATAAATGACAATCTATTTCTCAATATTAAACAAATATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTCTCCTTACTAAACCTTTTTAATAACTACACTACGATACTATTGGAGGGGAAGAAAGGATCTTCTATTTTATAAAAGTCCAAAACTTCTTTCCTAAGAAAATGATAGATATATAGGAGTTTTTTTCAAGAAAACTTTTTGATTTAAAACACAATTGTGTAGAATCCAACTAAGGTAGGAAATTCGGTTTAAAGTGATTATGGATTCAACGTTTTAGATGTAACTAGGGAGTGGTGGCACTGGAAACGATAACATGAATTTACGGCACTTTTGTCAAATATGTTGCGATAAATAAATAGTCTATGACAATCTTTGTTTTTTCTACTCACTGCACATTTAATACATCAACTATGGCGAAAAATTTGCTTAATTTCAAGTAAATCATTTTTGTAATTTACCTGGTTTAAAGTTCGGTAAAATATATTTGAATATACTGGCTAAGAAATTCTTATTCTTCTTCCTCATCATCTGTTTGGATTACATCTTATTACAGGTGTCCAATGGCGAGATAGGTCAGACGGAGCACGAAGAGTCTGCTTTTGACGGAGAGTTTATAAAAGTAGAGAAGGAAGCTTTGGAATCAAAGGATGGTTCAGATGCTGCAGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGGAGAAGTTCTAGGTTCAAACCTCAAATAGCACAACGTTTTTCTTTGTTTTATCTTGACGAGTCCGGAGCCTAAAGGGTACAAAATATTAACAAAAATTTCAAAACGACATATAAAATTTTATATTAACCAAAACGGCAAAATCGTTGCATCAACAGCGACTTACTCCATCGAAAAAAGCAAATCGCTGCCTCTGCAGCGATTTTATTTTTTTTAAAAATAAGGTAAATCTTTTTAATTATTATTTTTTAAAAAAAAATATGAAAATCGCTGCCTAGGTAGCGATTTCAGTTTTTTTTTTCAAATGTTAAATCGCTTCCTTGGCAGCGATTTTCATTTTTTTTAAAAAAAAAACTTAAATATGTTAATCGCTCAGCGATTTTATATAAAAAAAAAGAACTGTTTTTTAAAAAGAATGTTCAATCGCTGCGATTTTATTTTTTAAAAAATTTAAATCGCTGCCTTGGCAGCGATTTTATATATAAAGAAATTAAATCGCTGCCTTGGCAGCGATTTTATAAAAAAATTCAAATATATAAATCGCTCAGCGATTTTATATAAAAAAAATTAAAATATGGAAATCGCTGCCTAGGCAGCGATTTTCAATTTTTTTTAAAGCATCGATTTTATAAAAAAATAAAAATTTGTAATATTTTTTGAAATTTAAATATATAGCTTATAAGAAAATATACATGATTTAAAAAAAATTAAGAATAAGTAAGGTAACAAATATATTTTCTTTCTAAAAAAAGATATTATATTAAATTTAAATTTAAATGATGTTTGAGTTCAAATAGAATCCTAAATGATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGAGCAGCCGCATCATCATATTTGTATAATTGTTTATGCCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTACACATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATAGTGAATTTATTTATTGTAGATGTGAGCATGAGAAAGAATTATTCCTCTGCAACCATTGCCAAAGCCTCTAAGGACCAATCAACTTGAGGTTTCAAGTGCGCTTGCACGTAAATGGGTGCGACGTAGAAATCATCAAAATAAGGCACGAACTATAATCAGTGTGATTAGGGATATACTAGATAATCTAACTGATGAACAGATATTTAATATTATTAGTATCTTAAACTATTCATATTTTATTTCATTTTAAATACAAATATGTTTGGTAGATCTTTAAATGAGGCACTTATGTTTCACTACCCTAGAAAATTATGTGAATAAAATTGTCACGACCCAAATCGAGCCGCGAGTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCCAAACCCTAACATTTTAACCATAATAGACAGAATACAATGCGGAAGACTTAAAACTCATTAATAAAAATAGATTAATAACTTCTAAAACTCAAACACTTGTTATTATCCCCAAAATCTGGAAGCCATCATCACAAGAACATCTATCCTCAAATTACTAATCTAAGAGTATCTAAGAAGCTAAAATAAGTAAAAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAAATCCGGTGTAATGAAGACTGGCTAGAGTTGCGGTTGAGTTGAAAACGACGGCACGTTTGCTGCACTCCACAAATAATCAAGAAAACAAATACAAGTAGGGGTCAGTACAAGGCACAAGTACTGAGTAGGTATCATCGGCCAACTCAAAATAGAAAACAGTATATATCAGATAATAACATAAAATCAACCATATTCCTCAACAGGTGAAAGCAACAAGTTCACAAATCATGTGTAACCACATCAAACACACCTATGAGAACTCAAGTCTCCACACCATGCTCATTTGGGATATAGGTTCTTTTCATTCGAATTTATTAACATAATTTCAAGATTCATTATCTTTATTCCTCTTGTGTCGGTACGTGACACTCCGCTCCCCTACTACTATGTGCCGAAACGTGACACTCTGATCCCTTAATTCTACGTGTCGATTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCTCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACATGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCACCTAATTCTACGTGTCGGTTCGTGACACCCTCTCCACTAATCTCATTCTATTAATTCATCAAGCCTTATTTTATACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCTTATACCAAGGCATCATCAATCTCATTACTTTAGCTCATCAAGCCTTCTCTTATACCAAGGCATCCTCATTAACAAGGTAAATTTAGGATTAGAGATTCAATAGACTCATCATGCTTATTCATCACAATTATATAATCACATCATGTAAGCACACAATTAAGCATATAGAAGATTTTATAATACTACCCAACACATATCATTCGCTATTAAGAGTCTACTACGAATAGCATAAAAACCATAACCTACCTCCACCGAAGATTCGTGATCAAGCAAGCAATTTCCAAAAGCTTTGTTTCCTCTTCGTTTCACTCTTCTCTCGATTGTTCTCTTTTCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAAGGGCGACTGGGCGCGGAGAATGAAGGAGGGGAGGAAAACCGGTGGGGAGAGAAACGTAGAGGAGAGGGGGGAGATGGGGTTAAGGAGTGGGGGAGATGGGGATTGGGAGGGGATGAGGAGGGAGCGGTGGGTGGAGGTTATGGGGCGGCAGGTTGTGGGCAATGGGAGGGCCTTGTGTGTTATTTCTGGCGGTTGGGCGAGTATATATAGTTAGTTCAGTCGGATTATTGTTATAAACATAAGTGAGACGACGATTTCTCCTGTTCATTTATAGATCCAAGCTGTAGTGAAGAGATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAGGTATGTTAAACAACATCCTATCTCAGCTAAATACCAACTCATGTCTGGATGTAATAAATATCCCTTCCTGAATTTTTTTCAGGCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTGGTGAGCATTTTATTTATTTCATAGCACATTATAAATCATTTACTTTGTCTGTAAGTCAAAATGCTGAATTTTTTTCTGCAACTAGGTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAAGTATGTAGGCTTGAATTGCCTTTCGACTTCCTTTTATGATCATGTGCTTTTCATTCTTTATCCTCATTGCAACTTCCATATGGTTACTTTAGTATTATGATTGCTGATAACTCTGCATTTTAGTTTATGGGCTTGATACCTATTGTACTTAGCTAGTGCTGAAGATACAAATTATTTCAGGGAGCGAAATA</genome_strand>
        <mrna_strand>ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAAGTGTCATACCTCCTCCAGCTACCTATTTTGATAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274960" ref_strand="+" ref_description="SGN-E274960 [cLEN-16-P24]">
      <seq>tgaaccagtcatgggggcaggaggtgtcatacctcctccagctacctattttgataagatccaagctgtagtgaagaaatatgacattcttttcattgcggatgaggtcatctgtgcctttgggaggcttggaacaatgtttggctctgacatgtataacatcaaacctgatcttgtcaccttagcaaaggctctttcttctgcatatatgcctattggagctgtccttgtaagccccgaagtttctgatgtaattcattctcaaagcaataaacttggttccttttcccatggattcacttattctgggcatcctgttgcatgcgcagtggcattggaagctattaaaatctacaaggagcgaaatatggttgagagagtaaatagaatatccccaaagtttcaagaaggtctgaaggcattttctgacagtcccattatcggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="11938" stop="20502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12238" g_stop="12295" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12296" i_stop="19467" i_length="7172">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19468" g_stop="19599" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="190" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19600" i_stop="19681" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19682" g_stop="19769" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="278" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19770" i_stop="19854" i_length="85">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19855" g_stop="19933" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="357" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19934" i_stop="20113" i_length="180">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.691" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20114" g_stop="20202" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="446" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E274960" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12238" e_stop="12295"/>
          <exon e_start="19468" e_stop="19599"/>
          <exon e_start="19682" e_stop="19769"/>
          <exon e_start="19855" e_stop="19933"/>
          <exon e_start="20114" e_stop="20202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAGGTAGTTTTCTTTGCGTTTTTGTCTGTTCTTTTTATTCCAGAAGGAGGAAGCTATATCACTTTTGCATTACTACTTAGAATGCTGCATGCAATGCTCAATCTAGGATGTAAGAGTTCGTTCTGTAGTTTTGGTGCCAAAGAATGAAGGCAATCAGCTAAGTATTTATTTAAGAAACTCCGAAGTTTGTGCTTACTGTCATTGTCAAAGAAGGGTGTAACTGGTAACCTCTTTCTGTCTGTAAAACCCAAGCATATTTGCATTTGGTTTTACCATGAGATAGAATGAAGATCATCAGCCATTGAGAAATTTGTGGGTAGAATGAGGATCATCAGCCACAAGATATGTGCAATAACAAGTCCTTTTCTTTTATTTCTGGCAGTTTTTGCAGTTATCTATCTTTAGTTCCTTCAAATTATTCTTATATACATAACTAAAACAACGATTTCTCCTTTTCATTTATAAATTCAANCTGTATTGAAAAAATATGACATCCTTTTCATTGCGGATGAAGTCATCTGTGCCTTTGGCAGGCTTGNAACAATGTTTGGTTCTGACATGTATTACATCAAACCTGATTCTGTCACCTTAACAANCTATTTTAACACAAATCCTAACTTANNTTAAATCCAACCCCCTGTCTGCAATGTCAAAAACTATCCCTTCNNNGAATTCCNNNCACNNNNNTTNNNTNNTCNTTATCCNNNNAATTGCANCNNNNNCNNNNCNNNCCCNNNNNNNCNNNNNNNCNTNNNCNNNANCCTNCCANANNTNNTNNNCCANNNNNNCTTCNNNNNNNNNNNNNNNCNTTNNCCNNNNTCTTCCNNNNNNCTCCNCCCCNNNCACNNNNCCNCNAANCCCNNTNNCANNNCCCAACTCTCCCCTATCANNNNCACATANNNNTCCNTATCCNNNNTCNNCNNATTCTCNCACANCTAAACCCATACTCCNTCCACACTACCCCTCNCCTTTCACCCTCNNTAACCATCANTTTCATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATCACAACAACATTATATATTGTTATACATAATAAAATTTAGTTGATATAGTATTAGATGAATTTCAAATTTTAATAAATTCATATTCATTAATTTTTAGATAAAGACCAATTTAATACATTCATATATAAAAATAATCTTAACTATATAGTAATTGGGTCTTAATAGAACATCCTAATATTTAAAACCTATATTTAAAGTCAAATATTAAAAGTTAAATGCACAACTTAATTATATTCAAATATTGACATCTTAATCTTATTAAAAATAAATTATACCTACATGATCTCAAATGATTTCTCATTTTAAAGTCAAAACGTGCTACTGGTACCTTATGGTGAAGGTTGTTATTTGTTAATCTTACCTAATCTTGTATAACTGCACATCCAACATCCACTTCTTTAAAATATTTTCATCTATTATTTATTCTCTTGAAAGAATGAACCTAAACATCTAAATTGTTTGTACTTTGATACCACAATTCAATTTACAACGTTATTTGATCTTCTCATGCTAATTAAACATGTAATGCATATAATCAGTTGTATTTTTACTTTCCATGATTATCTTCTTTTTTAAAGTGCTTTCTATATTTTAAGTTTTTTTTTTCTAATTTTCTATTTTGTACAAGTGTAACAAATTCTAATGAATTGTGGCATTTACAAATTAAAGTTCCACAATTTGATGTAATTTGCAGAGGTTATCACAAACCTCCACAATAAAATCGCTACAAATTATAATAAATTGCAATGTTCACAAAACCTCACAAATTGACGTAATTTGCGAAGATTATCACAAACCTCTACAATAAAACCGTTACAAAATAAATTATATCACAGGAGTTAAAATAAACGCTACAAAATAATTCATAGTCAAATTTTCTAAAAACCCCACAAATAAACCTCTCAAAATTAGCTCGTTTGTTTTTGTGGTTCTTAAGCTAATTTTCTTTGACCTTGGTCTTAGGTATATAAAATAATAATGCCAAAATTGAATTTAATTGGCAGCCTAAAGTTGGCGGTCATTGGGGGATGAATTGACCAATTATATTTATTATTTGAATAAAACTTTCAACTCAAATGTTGAACTATATACTGGTCTAAGTTCAGCTTAGCCGGCCATGATTTAGTCACACCATATTTGTTTACCCATTTTATACAAGTCAACCATCTAATTATTTATTCTTATTAAACATCCATTGATAATTTCCACAAGAGTTAATTAGTATAAATATTCTCAAAAATTAATTTCAACATCATTTTCAGAAAACTTCATCAGAAACTAAATCAAAATTAAAGAAGTTACATATAGTATGGGAGTCAATAATACGATTCAGTCGATTTTAAAAATAAATTCTTTACATATATTATCCTTAAAAAAGTGATACTATATGCTCAATAGTGATATGACATGTTTGGAAATTTTTTAGTTATTATTTCATATGAATGGAATTCAACATGAAGATTTTATAATGTTTTCTAATTTCTAAACTTGACATATAAAATACATATAAATTTATTCAGTTTGTATTAGGTATTAAAATGAAGAAAAATGCTATCCTAATTTCTGGTAAGATATTATGAATTATACATTAAAACATATAATAATATTTACATGAAAAAAATATAATAATCATTCGGCTAGATTCGATATTTTTTTAGAATTGTTTTGACACCCACTACCCAAGTGACATATGAGTTTGCCTCATAGCTTGTTGAAGACAAAGCTAGGGGATTAATTTCACATGTCTAACATGGTGAGTCAAAGATGACAATCCAACTGACCTGGCCACTACATAATTATGACATCATAAAGGTTCAAACAAGAAGGAGGATAATTCGCATTCCTCATAATTCTACACTTTAAATTTTGTATATTTTTGAGCCATCATCACTAATATGTCGAATTCAAATGAACATACTCGATCTTTAACTGTATTATTTCACCAGACATATTACGTCACATATATTTCATAATATTAGTTATTATTCATATTAATTGATGTAAGTCTCGAATTATTGAGTCATGTCAATCTTTTATATATGTGGAGGGGATATATCACATCTTATAATTAATTCTTAATATGTTATAAATGACAATCTATTTCTCAATATTAAACAAATATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTCTCCTTACTAAACCTTTTTAATAACTACACTACGATACTATTGGAGGGGAAGAAAGGATCTTCTATTTTATAAAAGTCCAAAACTTCTTTCCTAAGAAAATGATAGATATATAGGAGTTTTTTTCAAGAAAACTTTTTGATTTAAAACACAATTGTGTAGAATCCAACTAAGGTAGGAAATTCGGTTTAAAGTGATTATGGATTCAACGTTTTAGATGTAACTAGGGAGTGGTGGCACTGGAAACGATAACATGAATTTACGGCACTTTTGTCAAATATGTTGCGATAAATAAATAGTCTATGACAATCTTTGTTTTTTCTACTCACTGCACATTTAATACATCAACTATGGCGAAAAATTTGCTTAATTTCAAGTAAATCATTTTTGTAATTTACCTGGTTTAAAGTTCGGTAAAATATATTTGAATATACTGGCTAAGAAATTCTTATTCTTCTTCCTCATCATCTGTTTGGATTACATCTTATTACAGGTGTCCAATGGCGAGATAGGTCAGACGGAGCACGAAGAGTCTGCTTTTGACGGAGAGTTTATAAAAGTAGAGAAGGAAGCTTTGGAATCAAAGGATGGTTCAGATGCTGCAGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGGAGAAGTTCTAGGTTCAAACCTCAAATAGCACAACGTTTTTCTTTGTTTTATCTTGACGAGTCCGGAGCCTAAAGGGTACAAAATATTAACAAAAATTTCAAAACGACATATAAAATTTTATATTAACCAAAACGGCAAAATCGTTGCATCAACAGCGACTTACTCCATCGAAAAAAGCAAATCGCTGCCTCTGCAGCGATTTTATTTTTTTTAAAAATAAGGTAAATCTTTTTAATTATTATTTTTTAAAAAAAAATATGAAAATCGCTGCCTAGGTAGCGATTTCAGTTTTTTTTTTCAAATGTTAAATCGCTTCCTTGGCAGCGATTTTCATTTTTTTTAAAAAAAAAACTTAAATATGTTAATCGCTCAGCGATTTTATATAAAAAAAAAGAACTGTTTTTTAAAAAGAATGTTCAATCGCTGCGATTTTATTTTTTAAAAAATTTAAATCGCTGCCTTGGCAGCGATTTTATATATAAAGAAATTAAATCGCTGCCTTGGCAGCGATTTTATAAAAAAATTCAAATATATAAATCGCTCAGCGATTTTATATAAAAAAAATTAAAATATGGAAATCGCTGCCTAGGCAGCGATTTTCAATTTTTTTTAAAGCATCGATTTTATAAAAAAATAAAAATTTGTAATATTTTTTGAAATTTAAATATATAGCTTATAAGAAAATATACATGATTTAAAAAAAATTAAGAATAAGTAAGGTAACAAATATATTTTCTTTCTAAAAAAAGATATTATATTAAATTTAAATTTAAATGATGTTTGAGTTCAAATAGAATCCTAAATGATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGAGCAGCCGCATCATCATATTTGTATAATTGTTTATGCCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTACACATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATAGTGAATTTATTTATTGTAGATGTGAGCATGAGAAAGAATTATTCCTCTGCAACCATTGCCAAAGCCTCTAAGGACCAATCAACTTGAGGTTTCAAGTGCGCTTGCACGTAAATGGGTGCGACGTAGAAATCATCAAAATAAGGCACGAACTATAATCAGTGTGATTAGGGATATACTAGATAATCTAACTGATGAACAGATATTTAATATTATTAGTATCTTAAACTATTCATATTTTATTTCATTTTAAATACAAATATGTTTGGTAGATCTTTAAATGAGGCACTTATGTTTCACTACCCTAGAAAATTATGTGAATAAAATTGTCACGACCCAAATCGAGCCGCGAGTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCCAAACCCTAACATTTTAACCATAATAGACAGAATACAATGCGGAAGACTTAAAACTCATTAATAAAAATAGATTAATAACTTCTAAAACTCAAACACTTGTTATTATCCCCAAAATCTGGAAGCCATCATCACAAGAACATCTATCCTCAAATTACTAATCTAAGAGTATCTAAGAAGCTAAAATAAGTAAAAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAAATCCGGTGTAATGAAGACTGGCTAGAGTTGCGGTTGAGTTGAAAACGACGGCACGTTTGCTGCACTCCACAAATAATCAAGAAAACAAATACAAGTAGGGGTCAGTACAAGGCACAAGTACTGAGTAGGTATCATCGGCCAACTCAAAATAGAAAACAGTATATATCAGATAATAACATAAAATCAACCATATTCCTCAACAGGTGAAAGCAACAAGTTCACAAATCATGTGTAACCACATCAAACACACCTATGAGAACTCAAGTCTCCACACCATGCTCATTTGGGATATAGGTTCTTTTCATTCGAATTTATTAACATAATTTCAAGATTCATTATCTTTATTCCTCTTGTGTCGGTACGTGACACTCCGCTCCCCTACTACTATGTGCCGAAACGTGACACTCTGATCCCTTAATTCTACGTGTCGATTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCTCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACATGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCACCTAATTCTACGTGTCGGTTCGTGACACCCTCTCCACTAATCTCATTCTATTAATTCATCAAGCCTTATTTTATACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCTTATACCAAGGCATCATCAATCTCATTACTTTAGCTCATCAAGCCTTCTCTTATACCAAGGCATCCTCATTAACAAGGTAAATTTAGGATTAGAGATTCAATAGACTCATCATGCTTATTCATCACAATTATATAATCACATCATGTAAGCACACAATTAAGCATATAGAAGATTTTATAATACTACCCAACACATATCATTCGCTATTAAGAGTCTACTACGAATAGCATAAAAACCATAACCTACCTCCACCGAAGATTCGTGATCAAGCAAGCAATTTCCAAAAGCTTTGTTTCCTCTTCGTTTCACTCTTCTCTCGATTGTTCTCTTTTCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAAGGGCGACTGGGCGCGGAGAATGAAGGAGGGGAGGAAAACCGGTGGGGAGAGAAACGTAGAGGAGAGGGGGGAGATGGGGTTAAGGAGTGGGGGAGATGGGGATTGGGAGGGGATGAGGAGGGAGCGGTGGGTGGAGGTTATGGGGCGGCAGGTTGTGGGCAATGGGAGGGCCTTGTGTGTTATTTCTGGCGGTTGGGCGAGTATATATAGTTAGTTCAGTCGGATTATTGTTATAAACATAAGTGAGACGACGATTTCTCCTGTTCATTTATAGATCCAAGCTGTAGTGAAGAGATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAGGTATGTTAAACAACATCCTATCTCAGCTAAATACCAACTCATGTCTGGATGTAATAAATATCCCTTCCTGAATTTTTTTCAGGCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTGGTGAGCATTTTATTTATTTCATAGCACATTATAAATCATTTACTTTGTCTGTAAGTCAAAATGCTGAATTTTTTTCTGCAACTAGGTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAAGTATGTAGGCTTGAATTGCCTTTCGACTTCCTTTTATGATCATGTGCTTTTCATTCTTTATCCTCATTGCAACTTCCATATGGTTACTTTAGTATTATGATTGCTGATAACTCTGCATTTTAGTTTATGGGCTTGATACCTATTGTACTTAGCTAGTGCTGAAGATACAAATTATTTCAGGGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAG</genome_strand>
        <mrna_strand>TGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCTGTAGTGAAGAAATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAG..................................................................................GCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTG.....................................................................................GTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAA....................................................................................................................................................................................GGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206116" ref_strand="+" ref_description="SGN-E206116 [cLEC-29-B9]">
      <seq>gtcatacctcctccagctacctattttgataagatccaagctgtagtgaagaaatatgacattcttttcattgcggatgaggtcatctgtgcctttgggaggcttggaacaatgtttggctctgacatgtataacatcaaacctgatcttgtcaccttagcaaaggctctttcttctgcatatatgcctattggagctgtccttgtaagccccgaagtttctgatgtaattcattctcaaagcaataaacttggttccttttcccatggattcacttattctgggcatcctgttgcatgcgcagtggcattggaagctattaaaatctacaaggagcgaaatatggttgagagagtaaatagaatatccccaaagtttcaagaaggtctgaaggcattttctgacagtcccattatcggagagattaggggacttggtttgatccttgccacagagtttgcgaacaacaaatctcctaatgatcctttcccttcccgnaaaaaaaaaatttttggggtgttggtgcatattttggagcgcaatgtcagaagaatggcatgttggtacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="11963" stop="20803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12263" g_stop="12295" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12296" i_stop="19467" i_length="7172">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19468" g_stop="19599" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="165" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19600" i_stop="19681" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19682" g_stop="19769" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="253" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19770" i_stop="19854" i_length="85">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19855" g_stop="19933" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="332" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19934" i_stop="20113" i_length="180">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.691" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20114" g_stop="20204" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="423" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20205" i_stop="20290" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20291" g_stop="20369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="503" r_length="80" r_score="0.911"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20370" i_stop="20438" i_length="69">
            <donor d_prob="0.988" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20439" g_stop="20503" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="568" r_length="65" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E206116" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12263" e_stop="12295"/>
          <exon e_start="19468" e_stop="19599"/>
          <exon e_start="19682" e_stop="19769"/>
          <exon e_start="19855" e_stop="19933"/>
          <exon e_start="20114" e_stop="20204"/>
          <exon e_start="20291" e_stop="20369"/>
          <exon e_start="20439" e_stop="20503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATACCTCCTCCAGCTACCTATTTTGATAAGGTAGTTTTCTTTGCGTTTTTGTCTGTTCTTTTTATTCCAGAAGGAGGAAGCTATATCACTTTTGCATTACTACTTAGAATGCTGCATGCAATGCTCAATCTAGGATGTAAGAGTTCGTTCTGTAGTTTTGGTGCCAAAGAATGAAGGCAATCAGCTAAGTATTTATTTAAGAAACTCCGAAGTTTGTGCTTACTGTCATTGTCAAAGAAGGGTGTAACTGGTAACCTCTTTCTGTCTGTAAAACCCAAGCATATTTGCATTTGGTTTTACCATGAGATAGAATGAAGATCATCAGCCATTGAGAAATTTGTGGGTAGAATGAGGATCATCAGCCACAAGATATGTGCAATAACAAGTCCTTTTCTTTTATTTCTGGCAGTTTTTGCAGTTATCTATCTTTAGTTCCTTCAAATTATTCTTATATACATAACTAAAACAACGATTTCTCCTTTTCATTTATAAATTCAANCTGTATTGAAAAAATATGACATCCTTTTCATTGCGGATGAAGTCATCTGTGCCTTTGGCAGGCTTGNAACAATGTTTGGTTCTGACATGTATTACATCAAACCTGATTCTGTCACCTTAACAANCTATTTTAACACAAATCCTAACTTANNTTAAATCCAACCCCCTGTCTGCAATGTCAAAAACTATCCCTTCNNNGAATTCCNNNCACNNNNNTTNNNTNNTCNTTATCCNNNNAATTGCANCNNNNNCNNNNCNNNCCCNNNNNNNCNNNNNNNCNTNNNCNNNANCCTNCCANANNTNNTNNNCCANNNNNNCTTCNNNNNNNNNNNNNNNCNTTNNCCNNNNTCTTCCNNNNNNCTCCNCCCCNNNCACNNNNCCNCNAANCCCNNTNNCANNNCCCAACTCTCCCCTATCANNNNCACATANNNNTCCNTATCCNNNNTCNNCNNATTCTCNCACANCTAAACCCATACTCCNTCCACACTACCCCTCNCCTTTCACCCTCNNTAACCATCANTTTCATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATCACAACAACATTATATATTGTTATACATAATAAAATTTAGTTGATATAGTATTAGATGAATTTCAAATTTTAATAAATTCATATTCATTAATTTTTAGATAAAGACCAATTTAATACATTCATATATAAAAATAATCTTAACTATATAGTAATTGGGTCTTAATAGAACATCCTAATATTTAAAACCTATATTTAAAGTCAAATATTAAAAGTTAAATGCACAACTTAATTATATTCAAATATTGACATCTTAATCTTATTAAAAATAAATTATACCTACATGATCTCAAATGATTTCTCATTTTAAAGTCAAAACGTGCTACTGGTACCTTATGGTGAAGGTTGTTATTTGTTAATCTTACCTAATCTTGTATAACTGCACATCCAACATCCACTTCTTTAAAATATTTTCATCTATTATTTATTCTCTTGAAAGAATGAACCTAAACATCTAAATTGTTTGTACTTTGATACCACAATTCAATTTACAACGTTATTTGATCTTCTCATGCTAATTAAACATGTAATGCATATAATCAGTTGTATTTTTACTTTCCATGATTATCTTCTTTTTTAAAGTGCTTTCTATATTTTAAGTTTTTTTTTTCTAATTTTCTATTTTGTACAAGTGTAACAAATTCTAATGAATTGTGGCATTTACAAATTAAAGTTCCACAATTTGATGTAATTTGCAGAGGTTATCACAAACCTCCACAATAAAATCGCTACAAATTATAATAAATTGCAATGTTCACAAAACCTCACAAATTGACGTAATTTGCGAAGATTATCACAAACCTCTACAATAAAACCGTTACAAAATAAATTATATCACAGGAGTTAAAATAAACGCTACAAAATAATTCATAGTCAAATTTTCTAAAAACCCCACAAATAAACCTCTCAAAATTAGCTCGTTTGTTTTTGTGGTTCTTAAGCTAATTTTCTTTGACCTTGGTCTTAGGTATATAAAATAATAATGCCAAAATTGAATTTAATTGGCAGCCTAAAGTTGGCGGTCATTGGGGGATGAATTGACCAATTATATTTATTATTTGAATAAAACTTTCAACTCAAATGTTGAACTATATACTGGTCTAAGTTCAGCTTAGCCGGCCATGATTTAGTCACACCATATTTGTTTACCCATTTTATACAAGTCAACCATCTAATTATTTATTCTTATTAAACATCCATTGATAATTTCCACAAGAGTTAATTAGTATAAATATTCTCAAAAATTAATTTCAACATCATTTTCAGAAAACTTCATCAGAAACTAAATCAAAATTAAAGAAGTTACATATAGTATGGGAGTCAATAATACGATTCAGTCGATTTTAAAAATAAATTCTTTACATATATTATCCTTAAAAAAGTGATACTATATGCTCAATAGTGATATGACATGTTTGGAAATTTTTTAGTTATTATTTCATATGAATGGAATTCAACATGAAGATTTTATAATGTTTTCTAATTTCTAAACTTGACATATAAAATACATATAAATTTATTCAGTTTGTATTAGGTATTAAAATGAAGAAAAATGCTATCCTAATTTCTGGTAAGATATTATGAATTATACATTAAAACATATAATAATATTTACATGAAAAAAATATAATAATCATTCGGCTAGATTCGATATTTTTTTAGAATTGTTTTGACACCCACTACCCAAGTGACATATGAGTTTGCCTCATAGCTTGTTGAAGACAAAGCTAGGGGATTAATTTCACATGTCTAACATGGTGAGTCAAAGATGACAATCCAACTGACCTGGCCACTACATAATTATGACATCATAAAGGTTCAAACAAGAAGGAGGATAATTCGCATTCCTCATAATTCTACACTTTAAATTTTGTATATTTTTGAGCCATCATCACTAATATGTCGAATTCAAATGAACATACTCGATCTTTAACTGTATTATTTCACCAGACATATTACGTCACATATATTTCATAATATTAGTTATTATTCATATTAATTGATGTAAGTCTCGAATTATTGAGTCATGTCAATCTTTTATATATGTGGAGGGGATATATCACATCTTATAATTAATTCTTAATATGTTATAAATGACAATCTATTTCTCAATATTAAACAAATATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTCTCCTTACTAAACCTTTTTAATAACTACACTACGATACTATTGGAGGGGAAGAAAGGATCTTCTATTTTATAAAAGTCCAAAACTTCTTTCCTAAGAAAATGATAGATATATAGGAGTTTTTTTCAAGAAAACTTTTTGATTTAAAACACAATTGTGTAGAATCCAACTAAGGTAGGAAATTCGGTTTAAAGTGATTATGGATTCAACGTTTTAGATGTAACTAGGGAGTGGTGGCACTGGAAACGATAACATGAATTTACGGCACTTTTGTCAAATATGTTGCGATAAATAAATAGTCTATGACAATCTTTGTTTTTTCTACTCACTGCACATTTAATACATCAACTATGGCGAAAAATTTGCTTAATTTCAAGTAAATCATTTTTGTAATTTACCTGGTTTAAAGTTCGGTAAAATATATTTGAATATACTGGCTAAGAAATTCTTATTCTTCTTCCTCATCATCTGTTTGGATTACATCTTATTACAGGTGTCCAATGGCGAGATAGGTCAGACGGAGCACGAAGAGTCTGCTTTTGACGGAGAGTTTATAAAAGTAGAGAAGGAAGCTTTGGAATCAAAGGATGGTTCAGATGCTGCAGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGGAGAAGTTCTAGGTTCAAACCTCAAATAGCACAACGTTTTTCTTTGTTTTATCTTGACGAGTCCGGAGCCTAAAGGGTACAAAATATTAACAAAAATTTCAAAACGACATATAAAATTTTATATTAACCAAAACGGCAAAATCGTTGCATCAACAGCGACTTACTCCATCGAAAAAAGCAAATCGCTGCCTCTGCAGCGATTTTATTTTTTTTAAAAATAAGGTAAATCTTTTTAATTATTATTTTTTAAAAAAAAATATGAAAATCGCTGCCTAGGTAGCGATTTCAGTTTTTTTTTTCAAATGTTAAATCGCTTCCTTGGCAGCGATTTTCATTTTTTTTAAAAAAAAAACTTAAATATGTTAATCGCTCAGCGATTTTATATAAAAAAAAAGAACTGTTTTTTAAAAAGAATGTTCAATCGCTGCGATTTTATTTTTTAAAAAATTTAAATCGCTGCCTTGGCAGCGATTTTATATATAAAGAAATTAAATCGCTGCCTTGGCAGCGATTTTATAAAAAAATTCAAATATATAAATCGCTCAGCGATTTTATATAAAAAAAATTAAAATATGGAAATCGCTGCCTAGGCAGCGATTTTCAATTTTTTTTAAAGCATCGATTTTATAAAAAAATAAAAATTTGTAATATTTTTTGAAATTTAAATATATAGCTTATAAGAAAATATACATGATTTAAAAAAAATTAAGAATAAGTAAGGTAACAAATATATTTTCTTTCTAAAAAAAGATATTATATTAAATTTAAATTTAAATGATGTTTGAGTTCAAATAGAATCCTAAATGATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGAGCAGCCGCATCATCATATTTGTATAATTGTTTATGCCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTACACATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATAGTGAATTTATTTATTGTAGATGTGAGCATGAGAAAGAATTATTCCTCTGCAACCATTGCCAAAGCCTCTAAGGACCAATCAACTTGAGGTTTCAAGTGCGCTTGCACGTAAATGGGTGCGACGTAGAAATCATCAAAATAAGGCACGAACTATAATCAGTGTGATTAGGGATATACTAGATAATCTAACTGATGAACAGATATTTAATATTATTAGTATCTTAAACTATTCATATTTTATTTCATTTTAAATACAAATATGTTTGGTAGATCTTTAAATGAGGCACTTATGTTTCACTACCCTAGAAAATTATGTGAATAAAATTGTCACGACCCAAATCGAGCCGCGAGTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCCAAACCCTAACATTTTAACCATAATAGACAGAATACAATGCGGAAGACTTAAAACTCATTAATAAAAATAGATTAATAACTTCTAAAACTCAAACACTTGTTATTATCCCCAAAATCTGGAAGCCATCATCACAAGAACATCTATCCTCAAATTACTAATCTAAGAGTATCTAAGAAGCTAAAATAAGTAAAAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAAATCCGGTGTAATGAAGACTGGCTAGAGTTGCGGTTGAGTTGAAAACGACGGCACGTTTGCTGCACTCCACAAATAATCAAGAAAACAAATACAAGTAGGGGTCAGTACAAGGCACAAGTACTGAGTAGGTATCATCGGCCAACTCAAAATAGAAAACAGTATATATCAGATAATAACATAAAATCAACCATATTCCTCAACAGGTGAAAGCAACAAGTTCACAAATCATGTGTAACCACATCAAACACACCTATGAGAACTCAAGTCTCCACACCATGCTCATTTGGGATATAGGTTCTTTTCATTCGAATTTATTAACATAATTTCAAGATTCATTATCTTTATTCCTCTTGTGTCGGTACGTGACACTCCGCTCCCCTACTACTATGTGCCGAAACGTGACACTCTGATCCCTTAATTCTACGTGTCGATTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCTCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACATGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCACCTAATTCTACGTGTCGGTTCGTGACACCCTCTCCACTAATCTCATTCTATTAATTCATCAAGCCTTATTTTATACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCTTATACCAAGGCATCATCAATCTCATTACTTTAGCTCATCAAGCCTTCTCTTATACCAAGGCATCCTCATTAACAAGGTAAATTTAGGATTAGAGATTCAATAGACTCATCATGCTTATTCATCACAATTATATAATCACATCATGTAAGCACACAATTAAGCATATAGAAGATTTTATAATACTACCCAACACATATCATTCGCTATTAAGAGTCTACTACGAATAGCATAAAAACCATAACCTACCTCCACCGAAGATTCGTGATCAAGCAAGCAATTTCCAAAAGCTTTGTTTCCTCTTCGTTTCACTCTTCTCTCGATTGTTCTCTTTTCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAAGGGCGACTGGGCGCGGAGAATGAAGGAGGGGAGGAAAACCGGTGGGGAGAGAAACGTAGAGGAGAGGGGGGAGATGGGGTTAAGGAGTGGGGGAGATGGGGATTGGGAGGGGATGAGGAGGGAGCGGTGGGTGGAGGTTATGGGGCGGCAGGTTGTGGGCAATGGGAGGGCCTTGTGTGTTATTTCTGGCGGTTGGGCGAGTATATATAGTTAGTTCAGTCGGATTATTGTTATAAACATAAGTGAGACGACGATTTCTCCTGTTCATTTATAGATCCAAGCTGTAGTGAAGAGATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAGGTATGTTAAACAACATCCTATCTCAGCTAAATACCAACTCATGTCTGGATGTAATAAATATCCCTTCCTGAATTTTTTTCAGGCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTGGTGAGCATTTTATTTATTTCATAGCACATTATAAATCATTTACTTTGTCTGTAAGTCAAAATGCTGAATTTTTTTCTGCAACTAGGTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAAGTATGTAGGCTTGAATTGCCTTTCGACTTCCTTTTATGATCATGTGCTTTTCATTCTTTATCCTCATTGCAACTTCCATATGGTTACTTTAGTATTATGATTGCTGATAACTCTGCATTTTAGTTTATGGGCTTGATACCTATTGTACTTAGCTAGTGCTGAAGATACAAATTATTTCAGGGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAGGTACAACTCTTATCACTTGTATAAAAGTGATTAAAACTTTATAAAAGGTTTTGCTATTCATTTTCTTCACTCTTATTTTCCTGTAGATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCCTAATGATCCTTTCCC-TCCCGAATGGGGTGCGTAATTTTCCTCATTTGCTCTTCAATTGGAGGTCATATTAAACTCTTATTTCATTCAATCGTCTCATTGCCGCCTCAGGTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACG</genome_strand>
        <mrna_strand>GTCATACCTCCTCCAGCTACCTATTTTGATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCTGTAGTGAAGAAATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAG..................................................................................GCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTG.....................................................................................GTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAA....................................................................................................................................................................................GGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAG......................................................................................ATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCCTAATGATCCTTTCCCTTCCCGNAAAAA.....................................................................AAAAATTTTTGGGGTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206582" ref_strand="+" ref_description="SGN-E206582 [cLEC-31-A10]">
      <seq>gtcatacctcctccagctacctattttgataagatccaagctgtagtgaagaaatatgacattcttttcattgcggatgaggtcatctgtgcctttgggaggcttggaacaatgtttggctctgacatgtataacatcaaacctgatcttgtcaccttagcaaaggctctttcttctgcatatatgcctattggagctgtccttgtaagccccgaagtttctgatgtaattcattctcaaagcaataaacttggttccttttcccatggattcacttattctgggcatcctgttgcatgcgcagtggcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="11963" stop="20213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12263" g_stop="12295" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12296" i_stop="19467" i_length="7172">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19468" g_stop="19599" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="165" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19600" i_stop="19681" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19682" g_stop="19769" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="253" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19770" i_stop="19854" i_length="85">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19855" g_stop="19913" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="312" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E206582" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12263" e_stop="12295"/>
          <exon e_start="19468" e_stop="19599"/>
          <exon e_start="19682" e_stop="19769"/>
          <exon e_start="19855" e_stop="19913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATACCTCCTCCAGCTACCTATTTTGATAAGGTAGTTTTCTTTGCGTTTTTGTCTGTTCTTTTTATTCCAGAAGGAGGAAGCTATATCACTTTTGCATTACTACTTAGAATGCTGCATGCAATGCTCAATCTAGGATGTAAGAGTTCGTTCTGTAGTTTTGGTGCCAAAGAATGAAGGCAATCAGCTAAGTATTTATTTAAGAAACTCCGAAGTTTGTGCTTACTGTCATTGTCAAAGAAGGGTGTAACTGGTAACCTCTTTCTGTCTGTAAAACCCAAGCATATTTGCATTTGGTTTTACCATGAGATAGAATGAAGATCATCAGCCATTGAGAAATTTGTGGGTAGAATGAGGATCATCAGCCACAAGATATGTGCAATAACAAGTCCTTTTCTTTTATTTCTGGCAGTTTTTGCAGTTATCTATCTTTAGTTCCTTCAAATTATTCTTATATACATAACTAAAACAACGATTTCTCCTTTTCATTTATAAATTCAANCTGTATTGAAAAAATATGACATCCTTTTCATTGCGGATGAAGTCATCTGTGCCTTTGGCAGGCTTGNAACAATGTTTGGTTCTGACATGTATTACATCAAACCTGATTCTGTCACCTTAACAANCTATTTTAACACAAATCCTAACTTANNTTAAATCCAACCCCCTGTCTGCAATGTCAAAAACTATCCCTTCNNNGAATTCCNNNCACNNNNNTTNNNTNNTCNTTATCCNNNNAATTGCANCNNNNNCNNNNCNNNCCCNNNNNNNCNNNNNNNCNTNNNCNNNANCCTNCCANANNTNNTNNNCCANNNNNNCTTCNNNNNNNNNNNNNNNCNTTNNCCNNNNTCTTCCNNNNNNCTCCNCCCCNNNCACNNNNCCNCNAANCCCNNTNNCANNNCCCAACTCTCCCCTATCANNNNCACATANNNNTCCNTATCCNNNNTCNNCNNATTCTCNCACANCTAAACCCATACTCCNTCCACACTACCCCTCNCCTTTCACCCTCNNTAACCATCANTTTCATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATCACAACAACATTATATATTGTTATACATAATAAAATTTAGTTGATATAGTATTAGATGAATTTCAAATTTTAATAAATTCATATTCATTAATTTTTAGATAAAGACCAATTTAATACATTCATATATAAAAATAATCTTAACTATATAGTAATTGGGTCTTAATAGAACATCCTAATATTTAAAACCTATATTTAAAGTCAAATATTAAAAGTTAAATGCACAACTTAATTATATTCAAATATTGACATCTTAATCTTATTAAAAATAAATTATACCTACATGATCTCAAATGATTTCTCATTTTAAAGTCAAAACGTGCTACTGGTACCTTATGGTGAAGGTTGTTATTTGTTAATCTTACCTAATCTTGTATAACTGCACATCCAACATCCACTTCTTTAAAATATTTTCATCTATTATTTATTCTCTTGAAAGAATGAACCTAAACATCTAAATTGTTTGTACTTTGATACCACAATTCAATTTACAACGTTATTTGATCTTCTCATGCTAATTAAACATGTAATGCATATAATCAGTTGTATTTTTACTTTCCATGATTATCTTCTTTTTTAAAGTGCTTTCTATATTTTAAGTTTTTTTTTTCTAATTTTCTATTTTGTACAAGTGTAACAAATTCTAATGAATTGTGGCATTTACAAATTAAAGTTCCACAATTTGATGTAATTTGCAGAGGTTATCACAAACCTCCACAATAAAATCGCTACAAATTATAATAAATTGCAATGTTCACAAAACCTCACAAATTGACGTAATTTGCGAAGATTATCACAAACCTCTACAATAAAACCGTTACAAAATAAATTATATCACAGGAGTTAAAATAAACGCTACAAAATAATTCATAGTCAAATTTTCTAAAAACCCCACAAATAAACCTCTCAAAATTAGCTCGTTTGTTTTTGTGGTTCTTAAGCTAATTTTCTTTGACCTTGGTCTTAGGTATATAAAATAATAATGCCAAAATTGAATTTAATTGGCAGCCTAAAGTTGGCGGTCATTGGGGGATGAATTGACCAATTATATTTATTATTTGAATAAAACTTTCAACTCAAATGTTGAACTATATACTGGTCTAAGTTCAGCTTAGCCGGCCATGATTTAGTCACACCATATTTGTTTACCCATTTTATACAAGTCAACCATCTAATTATTTATTCTTATTAAACATCCATTGATAATTTCCACAAGAGTTAATTAGTATAAATATTCTCAAAAATTAATTTCAACATCATTTTCAGAAAACTTCATCAGAAACTAAATCAAAATTAAAGAAGTTACATATAGTATGGGAGTCAATAATACGATTCAGTCGATTTTAAAAATAAATTCTTTACATATATTATCCTTAAAAAAGTGATACTATATGCTCAATAGTGATATGACATGTTTGGAAATTTTTTAGTTATTATTTCATATGAATGGAATTCAACATGAAGATTTTATAATGTTTTCTAATTTCTAAACTTGACATATAAAATACATATAAATTTATTCAGTTTGTATTAGGTATTAAAATGAAGAAAAATGCTATCCTAATTTCTGGTAAGATATTATGAATTATACATTAAAACATATAATAATATTTACATGAAAAAAATATAATAATCATTCGGCTAGATTCGATATTTTTTTAGAATTGTTTTGACACCCACTACCCAAGTGACATATGAGTTTGCCTCATAGCTTGTTGAAGACAAAGCTAGGGGATTAATTTCACATGTCTAACATGGTGAGTCAAAGATGACAATCCAACTGACCTGGCCACTACATAATTATGACATCATAAAGGTTCAAACAAGAAGGAGGATAATTCGCATTCCTCATAATTCTACACTTTAAATTTTGTATATTTTTGAGCCATCATCACTAATATGTCGAATTCAAATGAACATACTCGATCTTTAACTGTATTATTTCACCAGACATATTACGTCACATATATTTCATAATATTAGTTATTATTCATATTAATTGATGTAAGTCTCGAATTATTGAGTCATGTCAATCTTTTATATATGTGGAGGGGATATATCACATCTTATAATTAATTCTTAATATGTTATAAATGACAATCTATTTCTCAATATTAAACAAATATGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTCTCCTTACTAAACCTTTTTAATAACTACACTACGATACTATTGGAGGGGAAGAAAGGATCTTCTATTTTATAAAAGTCCAAAACTTCTTTCCTAAGAAAATGATAGATATATAGGAGTTTTTTTCAAGAAAACTTTTTGATTTAAAACACAATTGTGTAGAATCCAACTAAGGTAGGAAATTCGGTTTAAAGTGATTATGGATTCAACGTTTTAGATGTAACTAGGGAGTGGTGGCACTGGAAACGATAACATGAATTTACGGCACTTTTGTCAAATATGTTGCGATAAATAAATAGTCTATGACAATCTTTGTTTTTTCTACTCACTGCACATTTAATACATCAACTATGGCGAAAAATTTGCTTAATTTCAAGTAAATCATTTTTGTAATTTACCTGGTTTAAAGTTCGGTAAAATATATTTGAATATACTGGCTAAGAAATTCTTATTCTTCTTCCTCATCATCTGTTTGGATTACATCTTATTACAGGTGTCCAATGGCGAGATAGGTCAGACGGAGCACGAAGAGTCTGCTTTTGACGGAGAGTTTATAAAAGTAGAGAAGGAAGCTTTGGAATCAAAGGATGGTTCAGATGCTGCAGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGGAGAAGTTCTAGGTTCAAACCTCAAATAGCACAACGTTTTTCTTTGTTTTATCTTGACGAGTCCGGAGCCTAAAGGGTACAAAATATTAACAAAAATTTCAAAACGACATATAAAATTTTATATTAACCAAAACGGCAAAATCGTTGCATCAACAGCGACTTACTCCATCGAAAAAAGCAAATCGCTGCCTCTGCAGCGATTTTATTTTTTTTAAAAATAAGGTAAATCTTTTTAATTATTATTTTTTAAAAAAAAATATGAAAATCGCTGCCTAGGTAGCGATTTCAGTTTTTTTTTTCAAATGTTAAATCGCTTCCTTGGCAGCGATTTTCATTTTTTTTAAAAAAAAAACTTAAATATGTTAATCGCTCAGCGATTTTATATAAAAAAAAAGAACTGTTTTTTAAAAAGAATGTTCAATCGCTGCGATTTTATTTTTTAAAAAATTTAAATCGCTGCCTTGGCAGCGATTTTATATATAAAGAAATTAAATCGCTGCCTTGGCAGCGATTTTATAAAAAAATTCAAATATATAAATCGCTCAGCGATTTTATATAAAAAAAATTAAAATATGGAAATCGCTGCCTAGGCAGCGATTTTCAATTTTTTTTAAAGCATCGATTTTATAAAAAAATAAAAATTTGTAATATTTTTTGAAATTTAAATATATAGCTTATAAGAAAATATACATGATTTAAAAAAAATTAAGAATAAGTAAGGTAACAAATATATTTTCTTTCTAAAAAAAGATATTATATTAAATTTAAATTTAAATGATGTTTGAGTTCAAATAGAATCCTAAATGATGAGAAATTTAGATTTAATGTCAACTCAAGCATGGGGAGCAGCCGCATCATCATATTTGTATAATTGTTTATGCCGTGCATCAATGAAAAAATCAAATGAAGTTTGTGGATTTCTCTCTTTAGTGCAGGTACACATATTTTTTATATACTAGTAATATGCACTTTTAAATTTAAGTGCATTATAAGTAATAGTGAATTTATTTATTGTAGATGTGAGCATGAGAAAGAATTATTCCTCTGCAACCATTGCCAAAGCCTCTAAGGACCAATCAACTTGAGGTTTCAAGTGCGCTTGCACGTAAATGGGTGCGACGTAGAAATCATCAAAATAAGGCACGAACTATAATCAGTGTGATTAGGGATATACTAGATAATCTAACTGATGAACAGATATTTAATATTATTAGTATCTTAAACTATTCATATTTTATTTCATTTTAAATACAAATATGTTTGGTAGATCTTTAAATGAGGCACTTATGTTTCACTACCCTAGAAAATTATGTGAATAAAATTGTCACGACCCAAATCGAGCCGCGAGTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCCAAACCCTAACATTTTAACCATAATAGACAGAATACAATGCGGAAGACTTAAAACTCATTAATAAAAATAGATTAATAACTTCTAAAACTCAAACACTTGTTATTATCCCCAAAATCTGGAAGCCATCATCACAAGAACATCTATCCTCAAATTACTAATCTAAGAGTATCTAAGAAGCTAAAATAAGTAAAAAGCTAGTCCATGCCGGAAGTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAAATCCGGTGTAATGAAGACTGGCTAGAGTTGCGGTTGAGTTGAAAACGACGGCACGTTTGCTGCACTCCACAAATAATCAAGAAAACAAATACAAGTAGGGGTCAGTACAAGGCACAAGTACTGAGTAGGTATCATCGGCCAACTCAAAATAGAAAACAGTATATATCAGATAATAACATAAAATCAACCATATTCCTCAACAGGTGAAAGCAACAAGTTCACAAATCATGTGTAACCACATCAAACACACCTATGAGAACTCAAGTCTCCACACCATGCTCATTTGGGATATAGGTTCTTTTCATTCGAATTTATTAACATAATTTCAAGATTCATTATCTTTATTCCTCTTGTGTCGGTACGTGACACTCCGCTCCCCTACTACTATGTGCCGAAACGTGACACTCTGATCCCTTAATTCTACGTGTCGATTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCTCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACATGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCACCTAATTCTACGTGTCGGTTCGTGACACCCTCTCCACTAATCTCATTCTATTAATTCATCAAGCCTTATTTTATACCAAGGCATCATCAATCTCATTACTTTAGTTCATCAAGCCTTCTCTTATACCAAGGCATCATCAATCTCATTACTTTAGCTCATCAAGCCTTCTCTTATACCAAGGCATCCTCATTAACAAGGTAAATTTAGGATTAGAGATTCAATAGACTCATCATGCTTATTCATCACAATTATATAATCACATCATGTAAGCACACAATTAAGCATATAGAAGATTTTATAATACTACCCAACACATATCATTCGCTATTAAGAGTCTACTACGAATAGCATAAAAACCATAACCTACCTCCACCGAAGATTCGTGATCAAGCAAGCAATTTCCAAAAGCTTTGTTTCCTCTTCGTTTCACTCTTCTCTCGATTGTTCTCTTTTCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAAGGGCGACTGGGCGCGGAGAATGAAGGAGGGGAGGAAAACCGGTGGGGAGAGAAACGTAGAGGAGAGGGGGGAGATGGGGTTAAGGAGTGGGGGAGATGGGGATTGGGAGGGGATGAGGAGGGAGCGGTGGGTGGAGGTTATGGGGCGGCAGGTTGTGGGCAATGGGAGGGCCTTGTGTGTTATTTCTGGCGGTTGGGCGAGTATATATAGTTAGTTCAGTCGGATTATTGTTATAAACATAAGTGAGACGACGATTTCTCCTGTTCATTTATAGATCCAAGCTGTAGTGAAGAGATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAGGTATGTTAAACAACATCCTATCTCAGCTAAATACCAACTCATGTCTGGATGTAATAAATATCCCTTCCTGAATTTTTTTCAGGCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTGGTGAGCATTTTATTTATTTCATAGCACATTATAAATCATTTACTTTGTCTGTAAGTCAAAATGCTGAATTTTTTTCTGCAACTAGGTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTG</genome_strand>
        <mrna_strand>GTCATACCTCCTCCAGCTACCTATTTTGATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCTGTAGTGAAGAAATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAG..................................................................................GCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTG.....................................................................................GTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311343" ref_strand="+" ref_description="SGN-E311343 [cLEZ-18-C16]">
      <seq>agctacctattttgataagatccaagctgtagtgaagaaatatgacattcttttcattgcggatgaggtcatctgtgcctttgggaggcttggaacaatgtttggctctgacatgtataacatcaaacctgatcttgtcaccttagcaaaggctctttcttctgcatatatgcctattggagctgtccttgtaagccccgaagtttctgatgtaattcattctcaaagcaataaacttggttccttttcccatggattcacttattctgggcatcctgttgcatgcgcagtggcattggaagctattaaaatctacaaggagcgaaatatggttgagagagtaaatagaatatccccaaagtttcaagaaggtctgaaggcattttctgacagtcccattatcggagagattaggggacttggtttgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="11977" stop="20612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18791" g_stop="18809" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.579"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18810" i_stop="19467" i_length="658">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19468" g_stop="19599" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="151" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19600" i_stop="19681" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19682" g_stop="19769" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="239" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19770" i_stop="19854" i_length="85">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19855" g_stop="19933" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="318" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19934" i_stop="20113" i_length="180">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.691" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20114" g_stop="20204" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="409" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20205" i_stop="20290" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20291" g_stop="20312" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="431" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E311343" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18791" e_stop="18809"/>
          <exon e_start="19468" e_stop="19599"/>
          <exon e_start="19682" e_stop="19769"/>
          <exon e_start="19855" e_stop="19933"/>
          <exon e_start="20114" e_stop="20204"/>
          <exon e_start="20291" e_stop="20312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTCTCTTATACCAAGGCATCCTCATTAACAAGGTAAATTTAGGATTAGAGATTCAATAGACTCATCATGCTTATTCATCACAATTATATAATCACATCATGTAAGCACACAATTAAGCATATAGAAGATTTTATAATACTACCCAACACATATCATTCGCTATTAAGAGTCTACTACGAATAGCATAAAAACCATAACCTACCTCCACCGAAGATTCGTGATCAAGCAAGCAATTTCCAAAAGCTTTGTTTCCTCTTCGTTTCACTCTTCTCTCGATTGTTCTCTTTTCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAAGGGCGACTGGGCGCGGAGAATGAAGGAGGGGAGGAAAACCGGTGGGGAGAGAAACGTAGAGGAGAGGGGGGAGATGGGGTTAAGGAGTGGGGGAGATGGGGATTGGGAGGGGATGAGGAGGGAGCGGTGGGTGGAGGTTATGGGGCGGCAGGTTGTGGGCAATGGGAGGGCCTTGTGTGTTATTTCTGGCGGTTGGGCGAGTATATATAGTTAGTTCAGTCGGATTATTGTTATAAACATAAGTGAGACGACGATTTCTCCTGTTCATTTATAGATCCAAGCTGTAGTGAAGAGATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAGGTATGTTAAACAACATCCTATCTCAGCTAAATACCAACTCATGTCTGGATGTAATAAATATCCCTTCCTGAATTTTTTTCAGGCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTGGTGAGCATTTTATTTATTTCATAGCACATTATAAATCATTTACTTTGTCTGTAAGTCAAAATGCTGAATTTTTTTCTGCAACTAGGTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAAGTATGTAGGCTTGAATTGCCTTTCGACTTCCTTTTATGATCATGTGCTTTTCATTCTTTATCCTCATTGCAACTTCCATATGGTTACTTTAGTATTATGATTGCTGATAACTCTGCATTTTAGTTTATGGGCTTGATACCTATTGTACTTAGCTAGTGCTGAAGATACAAATTATTTCAGGGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAGGTACAACTCTTATCACTTGTATAAAAGTGATTAAAACTTTATAAAAGGTTTTGCTATTCATTTTCTTCACTCTTATTTTCCTGTAGATTAGGGGACTTGGTTTGATCC</genome_strand>
        <mrna_strand>AGCTACCTATTTTGATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGCTGTAGTGAAGAAATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAG..................................................................................GCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTG.....................................................................................GTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAA....................................................................................................................................................................................GGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAG......................................................................................ATTAGGGGACTTGGTTTGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249914" ref_strand="+" ref_description="SGN-E249914 [cLEF-57-L8]">
      <seq>gtcatctgtgcctttgggaggcttggaacaatgtttggctctgacatgtataacatcaaacctgatcttgtcaccttagcaaaggctctttcttctgcatatatgcctattggagctgtccttgtaagccccgaagtttctgatgtaattcattctcaaagcaataaacttggttccttttcccatggattcacttattctgggcatcctgttgcatgcgcagtggcattggaagctattaaaatctacaaggagcgaaatatggttgagagagtaaatagaatatccccaaagtttcaagaaggtctgaaggcattttctgacagtcccattatcggagagattaggggacttggtttgatccttgccacagagtttgcgaacaacaaatctcctaatgatcctttccctcccgaatggggtgttggtgcatattttggagcgcaatgtcagaagaatggcatgttggtacgagttgctggtgataccatcatgatgtctcctccatttgtagttactccagaagaacttgacgagttgattagaatctatgggaaagcattgagggaaactgaaaagagagtagaagaactcaagtctcagaagtaatattagttgacagcacaagcttgacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="19216" stop="21106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19516" g_stop="19599" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19600" i_stop="19681" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19682" g_stop="19769" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="172" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19770" i_stop="19854" i_length="85">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19855" g_stop="19933" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="251" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19934" i_stop="20113" i_length="180">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.691" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20114" g_stop="20204" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="342" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20205" i_stop="20290" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20291" g_stop="20369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="421" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20370" i_stop="20451" i_length="82">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20452" g_stop="20567" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="537" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20568" i_stop="20707" i_length="140">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20708" g_stop="20806" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="636" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E249914" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19516" e_stop="19599"/>
          <exon e_start="19682" e_stop="19769"/>
          <exon e_start="19855" e_stop="19933"/>
          <exon e_start="20114" e_stop="20204"/>
          <exon e_start="20291" e_stop="20369"/>
          <exon e_start="20452" e_stop="20567"/>
          <exon e_start="20708" e_stop="20806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAGGTATGTTAAACAACATCCTATCTCAGCTAAATACCAACTCATGTCTGGATGTAATAAATATCCCTTCCTGAATTTTTTTCAGGCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTGGTGAGCATTTTATTTATTTCATAGCACATTATAAATCATTTACTTTGTCTGTAAGTCAAAATGCTGAATTTTTTTCTGCAACTAGGTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAAGTATGTAGGCTTGAATTGCCTTTCGACTTCCTTTTATGATCATGTGCTTTTCATTCTTTATCCTCATTGCAACTTCCATATGGTTACTTTAGTATTATGATTGCTGATAACTCTGCATTTTAGTTTATGGGCTTGATACCTATTGTACTTAGCTAGTGCTGAAGATACAAATTATTTCAGGGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAGGTACAACTCTTATCACTTGTATAAAAGTGATTAAAACTTTATAAAAGGTTTTGCTATTCATTTTCTTCACTCTTATTTTCCTGTAGATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCCTAATGATCCTTTCCCTCCCGAATGGGGTGCGTAATTTTCCTCATTTGCTCTTCAATTGGAGGTCATATTAAACTCTTATTTCATTCAATCGTCTCATTGCCGCCTCAGGTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAGGTATGTTTATGGCTTGCATTTATAAATGCATATATGTGTGTGTGTTTTTGCCAGAAATTGCTTTGAGGCCTTACTTTTGTGAATTCATGTTCTGCAAGTCTGATAACCAATTTTTGTGAAAATATTTTCCTTTTGTTCAGTTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCACAAGCTTGACGA</genome_strand>
        <mrna_strand>GTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAG..................................................................................GCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTG.....................................................................................GTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAA....................................................................................................................................................................................GGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAG......................................................................................ATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCCTAATGATCCTTTCCCTCCCGAATGGG..................................................................................GTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAG............................................................................................................................................TTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCACAAGCTTGACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235812" ref_strand="+" ref_description="SGN-E235812 [cLED-15-D17]">
      <seq>taacatcaaacctgatcttgtcaccttagcaaaggctctttcttctgcatatatgcctattggagctgtccttgtaagccccgaagtttctgatgtaattcattctcaaagcaataaacttggttccttttcccatggattcacttattctgggcatcctgttgcatgcgcagtggcattggaagctattaaaatctacaaggagcgaaatatggttgagagagtaaatagaatatccccaaagtttcaagaaggtctgaaggcattttctgacagtcccattatcggagagattaggggacttggtttgatccttgccacagagtttgcgaacaacaaatctcctaatgatcctttccctcccgaatggggtgttggtgcatattttggagcgcaatgtcagaagaatggcatgttggtacgagttgctggtgataccatcatgatgtctcctccatttgtagttactccagaagaacttgacgagttgattagaatctatgggaaagcattgagggaaactgaaaagagagtagaagaactcaagtctcagaagtaatattagttgacagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="19266" stop="21094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19566" g_stop="19599" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19600" i_stop="19681" i_length="82">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19682" g_stop="19769" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="122" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19770" i_stop="19854" i_length="85">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19855" g_stop="19933" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="201" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19934" i_stop="20113" i_length="180">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.691" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20114" g_stop="20204" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="292" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20205" i_stop="20290" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20291" g_stop="20369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="371" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20370" i_stop="20451" i_length="82">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20452" g_stop="20567" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="487" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20568" i_stop="20707" i_length="140">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20708" g_stop="20794" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="574" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E235812" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19566" e_stop="19599"/>
          <exon e_start="19682" e_stop="19769"/>
          <exon e_start="19855" e_stop="19933"/>
          <exon e_start="20114" e_stop="20204"/>
          <exon e_start="20291" e_stop="20369"/>
          <exon e_start="20452" e_stop="20567"/>
          <exon e_start="20708" e_stop="20794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATCAAACCTGATCTTGTCACCTTAGCAAAGGTATGTTAAACAACATCCTATCTCAGCTAAATACCAACTCATGTCTGGATGTAATAAATATCCCTTCCTGAATTTTTTTCAGGCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTGGTGAGCATTTTATTTATTTCATAGCACATTATAAATCATTTACTTTGTCTGTAAGTCAAAATGCTGAATTTTTTTCTGCAACTAGGTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAAGTATGTAGGCTTGAATTGCCTTTCGACTTCCTTTTATGATCATGTGCTTTTCATTCTTTATCCTCATTGCAACTTCCATATGGTTACTTTAGTATTATGATTGCTGATAACTCTGCATTTTAGTTTATGGGCTTGATACCTATTGTACTTAGCTAGTGCTGAAGATACAAATTATTTCAGGGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAGGTACAACTCTTATCACTTGTATAAAAGTGATTAAAACTTTATAAAAGGTTTTGCTATTCATTTTCTTCACTCTTATTTTCCTGTAGATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCCTAATGATCCTTTCCCTCCCGAATGGGGTGCGTAATTTTCCTCATTTGCTCTTCAATTGGAGGTCATATTAAACTCTTATTTCATTCAATCGTCTCATTGCCGCCTCAGGTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAGGTATGTTTATGGCTTGCATTTATAAATGCATATATGTGTGTGTGTTTTTGCCAGAAATTGCTTTGAGGCCTTACTTTTGTGAATTCATGTTCTGCAAGTCTGATAACCAATTTTTGTGAAAATATTTTCCTTTTGTTCAGTTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCA</genome_strand>
        <mrna_strand>TAACATCAAACCTGATCTTGTCACCTTAGCAAAG..................................................................................GCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTG.....................................................................................GTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAA....................................................................................................................................................................................GGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAG......................................................................................ATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCCTAATGATCCTTTCCCTCCCGAATGGG..................................................................................GTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAG............................................................................................................................................TTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240752" ref_strand="+" ref_description="SGN-E240752 [cLED-24-A4]">
      <seq>taacatcaaacctgatcttgtcaccttagcaaaggctctttcttctgcatatatgcctattggagctgtccttgtaagccccgaagtttctgatgtaattcattctcaaagcaataaacttggttccttttcccatggattcacttattctgggcatcctgttgcatgcgcagtggcattggaagctattaaaatctacaaggagcgaaatatggttgagagagtaaatagaatatccccaaagtttcaagaaggtctgaaggcattttctgacagtcccattatcggagagattaggggacttggtttgatccttgccacagagtttgcgaacaacaaatctcctaatgatcctttccctcccgaatggggtgttggtgcatattttggagcgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="19266" stop="20778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19566" g_stop="19599" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19600" i_stop="19681" i_length="82">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19682" g_stop="19769" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="122" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19770" i_stop="19854" i_length="85">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19855" g_stop="19933" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="201" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19934" i_stop="20113" i_length="180">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.691" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20114" g_stop="20204" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="292" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20205" i_stop="20290" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20291" g_stop="20369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="371" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20370" i_stop="20451" i_length="82">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20452" g_stop="20478" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="398" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E240752" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19566" e_stop="19599"/>
          <exon e_start="19682" e_stop="19769"/>
          <exon e_start="19855" e_stop="19933"/>
          <exon e_start="20114" e_stop="20204"/>
          <exon e_start="20291" e_stop="20369"/>
          <exon e_start="20452" e_stop="20478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATCAAACCTGATCTTGTCACCTTAGCAAAGGTATGTTAAACAACATCCTATCTCAGCTAAATACCAACTCATGTCTGGATGTAATAAATATCCCTTCCTGAATTTTTTTCAGGCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTGGTGAGCATTTTATTTATTTCATAGCACATTATAAATCATTTACTTTGTCTGTAAGTCAAAATGCTGAATTTTTTTCTGCAACTAGGTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAAGTATGTAGGCTTGAATTGCCTTTCGACTTCCTTTTATGATCATGTGCTTTTCATTCTTTATCCTCATTGCAACTTCCATATGGTTACTTTAGTATTATGATTGCTGATAACTCTGCATTTTAGTTTATGGGCTTGATACCTATTGTACTTAGCTAGTGCTGAAGATACAAATTATTTCAGGGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAGGTACAACTCTTATCACTTGTATAAAAGTGATTAAAACTTTATAAAAGGTTTTGCTATTCATTTTCTTCACTCTTATTTTCCTGTAGATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCCTAATGATCCTTTCCCTCCCGAATGGGGTGCGTAATTTTCCTCATTTGCTCTTCAATTGGAGGTCATATTAAACTCTTATTTCATTCAATCGTCTCATTGCCGCCTCAGGTGTTGGTGCATATTTTGGAGCGCAAT</genome_strand>
        <mrna_strand>TAACATCAAACCTGATCTTGTCACCTTAGCAAAG..................................................................................GCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTG.....................................................................................GTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAA....................................................................................................................................................................................GGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAG......................................................................................ATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCCTAATGATCCTTTCCCTCCCGAATGGG..................................................................................GTGTTGGTGCATATTTTGGAGCGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210775" ref_strand="-" ref_description="SGN-E210775 [cLEC-68-G20]">
      <seq>gatgtaattcattctcaaagcaataaacttggttcctgttcccatggattcacttattctgggcatcctgttgcatgcgcagtggcattggaagctattaaaatctacaaggagcgaaatatggttgagagagtaaatagaatatccccaaagtttcaagaaggtctgaaggcattttctgacagtcccattatcggagagattaggggacttggtttgatccttgccacagagtttgcgaacaacaaatctcgtaatgatcctttccctcccgaatggggtgttggtgcatattttggagcgcaatgtcagaagaatggcatgttggtacgagttgctggtgataccatcatgatgtctcctccatttgtagttactccagaagaacttgacgagttgattagaatctatgggaaagcattgagggaaactgaaaagagagtagaagaactcaagtctcagaagtaatattagttgacagcacaagcttgacgatggcgaaaaataaaatcaaatgtgtttggatattctgtaaatgtccagaatgaagtaaagaaagtaatataatttttagtccaagttgttttctctttcattttacatgcagtatagttgcaccagttgacttgttgatgaatatatgtatccccttaaccagtaatcaccaaattgcatttcacaaaaaaatcgaattatcaatctatattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="19439" stop="21321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19739" g_stop="19769" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19770" i_stop="19854" i_length="85">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19855" g_stop="19933" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="110" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19934" i_stop="20113" i_length="180">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.691" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20114" g_stop="20204" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="201" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20205" i_stop="20290" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20291" g_stop="20369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="280" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20370" i_stop="20451" i_length="82">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20452" g_stop="20567" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="396" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20568" i_stop="20707" i_length="140">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20708" g_stop="21021" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="710" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E210775" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210775" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19739" e_stop="19769"/>
          <exon e_start="19855" e_stop="19933"/>
          <exon e_start="20114" e_stop="20204"/>
          <exon e_start="20291" e_stop="20369"/>
          <exon e_start="20452" e_stop="20567"/>
          <exon e_start="20708" e_stop="21021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTAATTCATTCTCAAAGCAATAAACTTGGTGAGCATTTTATTTATTTCATAGCACATTATAAATCATTTACTTTGTCTGTAAGTCAAAATGCTGAATTTTTTTCTGCAACTAGGTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAAGTATGTAGGCTTGAATTGCCTTTCGACTTCCTTTTATGATCATGTGCTTTTCATTCTTTATCCTCATTGCAACTTCCATATGGTTACTTTAGTATTATGATTGCTGATAACTCTGCATTTTAGTTTATGGGCTTGATACCTATTGTACTTAGCTAGTGCTGAAGATACAAATTATTTCAGGGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAGGTACAACTCTTATCACTTGTATAAAAGTGATTAAAACTTTATAAAAGGTTTTGCTATTCATTTTCTTCACTCTTATTTTCCTGTAGATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCCTAATGATCCTTTCCCTCCCGAATGGGGTGCGTAATTTTCCTCATTTGCTCTTCAATTGGAGGTCATATTAAACTCTTATTTCATTCAATCGTCTCATTGCCGCCTCAGGTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAGGTATGTTTATGGCTTGCATTTATAAATGCATATATGTGTGTGTGTTTTTGCCAGAAATTGCTTTGAGGCCTTACTTTTGTGAATTCATGTTCTGCAAGTCTGATAACCAATTTTTGTGAAAATATTTTCCTTTTGTTCAGTTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCACAAGCTTGACGATGGCGAAAAATAAAATCAAATGTGTTTGGATATTCTGTAAATGTCCAGAATGAAGTAAAGAAAGTAATATAATTTTTAGTCCAAGTTGTTTTCTCTTTCATTTTACATGCAGTATAGTTGCACCAGTTGACTTGTTGATGAATATATGTATCCCCTTAACCAGTAATCACCAAATTGCATTTCACAAAAAAATCGAATTATCAATCTATATTCTT</genome_strand>
        <mrna_strand>GATGTAATTCATTCTCAAAGCAATAAACTTG.....................................................................................GTTCCTGTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAA....................................................................................................................................................................................GGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAG......................................................................................ATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCGTAATGATCCTTTCCCTCCCGAATGGG..................................................................................GTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAG............................................................................................................................................TTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCACAAGCTTGACGATGGCGAAAAATAAAATCAAATGTGTTTGGATATTCTGTAAATGTCCAGAATGAAGTAAAGAAAGTAATATAATTTTTAGTCCAAGTTGTTTTCTCTTTCATTTTACATGCAGTATAGTTGCACCAGTTGACTTGTTGATGAATATATGTATCCCCTTAACCAGTAATCACCAAATTGCATTTCACAAAAAAATCGAATTATCAATCTATATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289060" ref_strand="-" ref_description="SGN-E289060 [cLES-18-I19]">
      <seq>tcccatggattcacttattctgggcatcctgttgcatgcgcagtggcattggaagctattaaaatctacaaggagcgaaatatggttgagagagtaaatagaatatccccaaagtttcaagaaggtctgaaggcattttctgacagtcccattatcggagagattaggggacttggtttgatccttgccacagagtttgcgaacaacaaatctcgtaatgatcctttccctcccgaatggggtgttggtgcatattttggagcgcaatgtcagaagaatggcatgttggtacgagttgctggtgataccatcatgatgtctcctccatttgtagttactccagaagaacttgacgagttgattagaatctatgggaaagcattgagggaaactgaaaagagagtagaagaactcaagtctcagaagtaatattagttgacagcacaagcttgacgatggcgaaaaataaaatcaaatgtgtttggatattctgtaaatgtccagaatgaagtaaagaaagtaatataatttttagtccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="19563" stop="21190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19863" g_stop="19933" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19934" i_stop="20113" i_length="180">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.691" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20114" g_stop="20204" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="162" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20205" i_stop="20290" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20291" g_stop="20369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="241" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20370" i_stop="20451" i_length="82">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20452" g_stop="20567" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="357" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20568" i_stop="20707" i_length="140">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20708" g_stop="20890" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="540" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E289060" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289060" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19863" e_stop="19933"/>
          <exon e_start="20114" e_stop="20204"/>
          <exon e_start="20291" e_stop="20369"/>
          <exon e_start="20452" e_stop="20567"/>
          <exon e_start="20708" e_stop="20890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAAGTATGTAGGCTTGAATTGCCTTTCGACTTCCTTTTATGATCATGTGCTTTTCATTCTTTATCCTCATTGCAACTTCCATATGGTTACTTTAGTATTATGATTGCTGATAACTCTGCATTTTAGTTTATGGGCTTGATACCTATTGTACTTAGCTAGTGCTGAAGATACAAATTATTTCAGGGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAGGTACAACTCTTATCACTTGTATAAAAGTGATTAAAACTTTATAAAAGGTTTTGCTATTCATTTTCTTCACTCTTATTTTCCTGTAGATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCCTAATGATCCTTTCCCTCCCGAATGGGGTGCGTAATTTTCCTCATTTGCTCTTCAATTGGAGGTCATATTAAACTCTTATTTCATTCAATCGTCTCATTGCCGCCTCAGGTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAGGTATGTTTATGGCTTGCATTTATAAATGCATATATGTGTGTGTGTTTTTGCCAGAAATTGCTTTGAGGCCTTACTTTTGTGAATTCATGTTCTGCAAGTCTGATAACCAATTTTTGTGAAAATATTTTCCTTTTGTTCAGTTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCACAAGCTTGACGATGGCGAAAAATAAAATCAAATGTGTTTGGATATTCTGTAAATGTCCAGAATGAAGTAAAGAAAGTAATATAATTTTTAGTCCAA</genome_strand>
        <mrna_strand>TCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAA....................................................................................................................................................................................GGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAG......................................................................................ATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCGTAATGATCCTTTCCCTCCCGAATGGG..................................................................................GTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAG............................................................................................................................................TTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCACAAGCTTGACGATGGCGAAAAATAAAATCAAATGTGTTTGGATATTCTGTAAATGTCCAGAATGAAGTAAAGAAAGTAATATAATTTTTAGTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249337" ref_strand="-" ref_description="SGN-E249337 [cLEF-50-O19]">
      <seq>acaaggagcgaaatatggttgagagagtaaatagaatatccccaaagtttcaagaaggtctgaaggcattttctgacagtcccattatcggagagattaggggacttggtttgatccttgccacagagtttgcgaacaacaaatctcctaatgatcctttccctcccgaatggggtgttggtgcatattttggagcgcaatgtcagaagaatggcatgttggtacgagttgctggtgataccatcatgatgtctcctccatttgtagttactccagaagaacttgacgagttgattagaatctatgggaaagcattgagggaaactgaaaagagagtagaagaactcaagtctcagaagtaatattagttgacagcacaagcttgacgatggcgaaaaataaaatcaaatgtgtttggatattctgtaaatgtccagaatgaagtaaagaaagtaatataatttttagtccaagttgttttctctttcattttacatgcagtatagttgcaccagttgacttgttgatgaatatatgtatccccttaaccagtaatcaccaaattgcatttcacaaaaaaatcgaattatcaatctatattcttgtaattaattgggtttttataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="19808" stop="21342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19930" g_stop="19933" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19934" i_stop="20113" i_length="180">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.691" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20114" g_stop="20204" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="95" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20205" i_stop="20290" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20291" g_stop="20369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="174" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20370" i_stop="20451" i_length="82">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20452" g_stop="20567" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="290" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20568" i_stop="20707" i_length="140">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20708" g_stop="21041" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="624" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="625" polyA_stop="641"/>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E249337" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249337" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19930" e_stop="19933"/>
          <exon e_start="20114" e_stop="20204"/>
          <exon e_start="20291" e_stop="20369"/>
          <exon e_start="20452" e_stop="20567"/>
          <exon e_start="20708" e_stop="21041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTATGTAGGCTTGAATTGCCTTTCGACTTCCTTTTATGATCATGTGCTTTTCATTCTTTATCCTCATTGCAACTTCCATATGGTTACTTTAGTATTATGATTGCTGATAACTCTGCATTTTAGTTTATGGGCTTGATACCTATTGTACTTAGCTAGTGCTGAAGATACAAATTATTTCAGGGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAGGTACAACTCTTATCACTTGTATAAAAGTGATTAAAACTTTATAAAAGGTTTTGCTATTCATTTTCTTCACTCTTATTTTCCTGTAGATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCCTAATGATCCTTTCCCTCCCGAATGGGGTGCGTAATTTTCCTCATTTGCTCTTCAATTGGAGGTCATATTAAACTCTTATTTCATTCAATCGTCTCATTGCCGCCTCAGGTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAGGTATGTTTATGGCTTGCATTTATAAATGCATATATGTGTGTGTGTTTTTGCCAGAAATTGCTTTGAGGCCTTACTTTTGTGAATTCATGTTCTGCAAGTCTGATAACCAATTTTTGTGAAAATATTTTCCTTTTGTTCAGTTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCACAAGCTTGACGATGGCGAAAAATAAAATCAAATGTGTTTGGATATTCTGTAAATGTCCAGAATGAAGTAAAGAAAGTAATATAATTTTTAGTCCAAGTTGTTTTCTCTTTCATTTTACATGCAGTATAGTTGCACCAGTTGACTTGTTGATGAATATATGTATCCCCTTAACCAGTAATCACCAAATTGCATTTCACAAAAAAATCGAATTATCAATCTATATTCTTGTAATTAATTGGGTTTTTAT</genome_strand>
        <mrna_strand>ACAA....................................................................................................................................................................................GGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAG......................................................................................ATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCCTAATGATCCTTTCCCTCCCGAATGGG..................................................................................GTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAG............................................................................................................................................TTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCACAAGCTTGACGATGGCGAAAAATAAAATCAAATGTGTTTGGATATTCTGTAAATGTCCAGAATGAAGTAAAGAAAGTAATATAATTTTTAGTCCAAGTTGTTTTCTCTTTCATTTTACATGCAGTATAGTTGCACCAGTTGACTTGTTGATGAATATATGTATCCCCTTAACCAGTAATCACCAAATTGCATTTCACAAAAAAATCGAATTATCAATCTATATTCTTGTAATTAATTGGGTTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393721" ref_strand="+" ref_description="SGN-E393721 [TUS-42-K12](-)">
      <seq>acagtcccattattggagagattaggggacttggtttgatccttgccacagagtttgcgaacaacaaatctcctaatgatcctttccctcccgaatggggtgttggtgcatattttggagcgcaatgtcagaagaatggcatgttggtacgagttgctggtgataccatcatgatgtctcctccatttgtagttactccagaagaacttgacgagttgattagaatctatgggaaagcattgagggaaactgaaaagagagtagaagaactcaagtctcagaagtaatattagttgacagcacaagcttgacgatggcgaaaaataaaatcaaatgtgtttggatattctgtaaatgtccagaatgaagtaaagaanagtaatataatttttagtccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="19989" stop="21190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20185" g_stop="20204" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20205" i_stop="20290" i_length="86">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20291" g_stop="20369" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="99" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20370" i_stop="20451" i_length="82">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20452" g_stop="20567" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="215" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20568" i_stop="20707" i_length="140">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20708" g_stop="20890" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="399" r_length="184" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E393721" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20185" e_stop="20204"/>
          <exon e_start="20291" e_stop="20369"/>
          <exon e_start="20452" e_stop="20567"/>
          <exon e_start="20708" e_stop="20890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTCCCATTATCGGAGAGGTACAACTCTTATCACTTGTATAAAAGTGATTAAAACTTTATAAAAGGTTTTGCTATTCATTTTCTTCACTCTTATTTTCCTGTAGATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCCTAATGATCCTTTCCCTCCCGAATGGGGTGCGTAATTTTCCTCATTTGCTCTTCAATTGGAGGTCATATTAAACTCTTATTTCATTCAATCGTCTCATTGCCGCCTCAGGTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAGGTATGTTTATGGCTTGCATTTATAAATGCATATATGTGTGTGTGTTTTTGCCAGAAATTGCTTTGAGGCCTTACTTTTGTGAATTCATGTTCTGCAAGTCTGATAACCAATTTTTGTGAAAATATTTTCCTTTTGTTCAGTTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCACAAGCTTGACGATGGCGAAAAATAAAATCAAATGTGTTTGGATATTCTGTAAATGTCCAGAATGAAGTAAAGAA-AGTAATATAATTTTTAGTCCAA</genome_strand>
        <mrna_strand>ACAGTCCCATTATTGGAGAG......................................................................................ATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCCTAATGATCCTTTCCCTCCCGAATGGG..................................................................................GTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAG............................................................................................................................................TTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCACAAGCTTGACGATGGCGAAAAATAAAATCAAATGTGTTTGGATATTCTGTAAATGTCCAGAATGAAGTAAAGAANAGTAATATAATTTTTAGTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284311" ref_strand="+" ref_description="SGN-E284311 [cLER-16-H10]">
      <seq>aacaacaaatctcctaatgatcctttccctcccgaatggggtgttggtgcatattttggagcgcaatgtcagaagaatggcatgttggtacgagttgctggtgataccatcatgatgtctcctccatttgtagttactccagaagaacttgacgagttgattagaatctatgggaaagcattgagggaaactgaaaagagagtagaagaactcaagtctcagaagtaatattagttgacagcacaagcttgacgatggcgaaaaataaaatcaaatgtgtttggatattctgtaaatgtccagaatgaagtaaagaaagtaatataatttttagtccaagttgttttctctttcattttacatgcagtatagttgcaccagttgacttgttgatgaatatatgtatccccttaaccagtaatcaccaaattgcatttcacaaaaaaatcgaattatcaatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="20030" stop="21316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20330" g_stop="20369" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20370" i_stop="20451" i_length="82">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20452" g_stop="20567" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="156" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20568" i_stop="20707" i_length="140">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20708" g_stop="21013" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="462" r_length="306" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="463" polyA_stop="472"/>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E284311" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20330" e_stop="20369"/>
          <exon e_start="20452" e_stop="20567"/>
          <exon e_start="20708" e_stop="21013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAAATCTCCTAATGATCCTTTCCCTCCCGAATGGGGTGCGTAATTTTCCTCATTTGCTCTTCAATTGGAGGTCATATTAAACTCTTATTTCATTCAATCGTCTCATTGCCGCCTCAGGTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAGGTATGTTTATGGCTTGCATTTATAAATGCATATATGTGTGTGTGTTTTTGCCAGAAATTGCTTTGAGGCCTTACTTTTGTGAATTCATGTTCTGCAAGTCTGATAACCAATTTTTGTGAAAATATTTTCCTTTTGTTCAGTTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCACAAGCTTGACGATGGCGAAAAATAAAATCAAATGTGTTTGGATATTCTGTAAATGTCCAGAATGAAGTAAAGAAAGTAATATAATTTTTAGTCCAAGTTGTTTTCTCTTTCATTTTACATGCAGTATAGTTGCACCAGTTGACTTGTTGATGAATATATGTATCCCCTTAACCAGTAATCACCAAATTGCATTTCACAAAAAAATCGAATTATCAATCT</genome_strand>
        <mrna_strand>AACAACAAATCTCCTAATGATCCTTTCCCTCCCGAATGGG..................................................................................GTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAG............................................................................................................................................TTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCACAAGCTTGACGATGGCGAAAAATAAAATCAAATGTGTTTGGATATTCTGTAAATGTCCAGAATGAAGTAAAGAAAGTAATATAATTTTTAGTCCAAGTTGTTTTCTCTTTCATTTTACATGCAGTATAGTTGCACCAGTTGACTTGTTGATGAATATATGTATCCCCTTAACCAGTAATCACCAAATTGCATTTCACAAAAAAATCGAATTATCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257410" ref_strand="+" ref_description="SGN-E257410 [cLEG-45-K6](-)">
      <seq>ttccctcccgaatggggtgttggtgcatattttggagcgcaatgtcagaagaatggcatgttggtacgagttgctggtgataccatcatgatgtctcctccatttgtagttactccagaagaacttgacgagttgattagaatctatgggaaagcattgagggaaactgaaaagagagtagaagaactcaagtctcagaagtaatattagttgacagcacaagcttgacgatggcgaaaaataaaatcaaatgtgtttggatattctgtaaatgtccagaatgaagtaaagaaagtaatataatttttagtccaagttgttttctctttcattttacatgcagtatagttgcaccagttgacttgttgatgaatatatgtatccccttaaccagtaatcaccaaattgcatttcacaaaaaaatcgaattatcaatctatattcttgtaattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="20137" stop="21329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20354" g_stop="20369" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20370" i_stop="20451" i_length="82">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20452" g_stop="20567" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="132" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20568" i_stop="20707" i_length="140">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20708" g_stop="21028" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="453" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="454" polyA_stop="468"/>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E257410" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20354" e_stop="20369"/>
          <exon e_start="20452" e_stop="20567"/>
          <exon e_start="20708" e_stop="21028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTCCCGAATGGGGTGCGTAATTTTCCTCATTTGCTCTTCAATTGGAGGTCATATTAAACTCTTATTTCATTCAATCGTCTCATTGCCGCCTCAGGTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAGGTATGTTTATGGCTTGCATTTATAAATGCATATATGTGTGTGTGTTTTTGCCAGAAATTGCTTTGAGGCCTTACTTTTGTGAATTCATGTTCTGCAAGTCTGATAACCAATTTTTGTGAAAATATTTTCCTTTTGTTCAGTTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCACAAGCTTGACGATGGCGAAAAATAAAATCAAATGTGTTTGGATATTCTGTAAATGTCCAGAATGAAGTAAAGAAAGTAATATAATTTTTAGTCCAAGTTGTTTTCTCTTTCATTTTACATGCAGTATAGTTGCACCAGTTGACTTGTTGATGAATATATGTATCCCCTTAACCAGTAATCACCAAATTGCATTTCACAAAAAAATCGAATTATCAATCTATATTCTTGTAATTA</genome_strand>
        <mrna_strand>TTCCCTCCCGAATGGG..................................................................................GTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAG............................................................................................................................................TTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCACAAGCTTGACGATGGCGAAAAATAAAATCAAATGTGTTTGGATATTCTGTAAATGTCCAGAATGAAGTAAAGAAAGTAATATAATTTTTAGTCCAAGTTGTTTTCTCTTTCATTTTACATGCAGTATAGTTGCACCAGTTGACTTGTTGATGAATATATGTATCCCCTTAACCAGTAATCACCAAATTGCATTTCACAAAAAAATCGAATTATCAATCTATATTCTTGTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330763" ref_strand="-" ref_description="SGN-E330763 [cTOD-8-F24]">
      <seq>tattttggagcgcaatgtcaaaagaatggcatgttggtacgagttgctggtgataccatcatgatgtctcctccatttgtagttactccagaagaacttgacgagttgattagaatttatgggaaagcattgagggaaactgaaaagagagtagaagaactcaagtctcagaagtaatattagttgacagcacaagcttgacgatggcgaaaaataaaatcaaatgtgtttggatattctgtaaatgtccagaatgaagtaaagaaagtaatataatttttagtccaagttgttttctctttcattttacatgcagtatagttgcaccagttgacttgttgatgaatatatgtatccccttaaccagtaatcaccaaattgcatttcccaaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="20163" stop="21298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20463" g_stop="20567" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20568" i_stop="20707" i_length="140">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20708" g_stop="20997" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="395" r_length="290" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="396" polyA_stop="425"/>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E330763" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330763" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20463" e_stop="20567"/>
          <exon e_start="20708" e_stop="20997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAGGTATGTTTATGGCTTGCATTTATAAATGCATATATGTGTGTGTGTTTTTGCCAGAAATTGCTTTGAGGCCTTACTTTTGTGAATTCATGTTCTGCAAGTCTGATAACCAATTTTTGTGAAAATATTTTCCTTTTGTTCAGTTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCACAAGCTTGACGATGGCGAAAAATAAAATCAAATGTGTTTGGATATTCTGTAAATGTCCAGAATGAAGTAAAGAAAGTAATATAATTTTTAGTCCAAGTTGTTTTCTCTTTCATTTTACATGCAGTATAGTTGCACCAGTTGACTTGTTGATGAATATATGTATCCCCTTAACCAGTAATCACCAAATTGCATTTCACAAAAAA</genome_strand>
        <mrna_strand>TATTTTGGAGCGCAATGTCAAAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAG............................................................................................................................................TTGATTAGAATTTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCACAAGCTTGACGATGGCGAAAAATAAAATCAAATGTGTTTGGATATTCTGTAAATGTCCAGAATGAAGTAAAGAAAGTAATATAATTTTTAGTCCAAGTTGTTTTCTCTTTCATTTTACATGCAGTATAGTTGCACCAGTTGACTTGTTGATGAATATATGTATCCCCTTAACCAGTAATCACCAAATTGCATTTCCCAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556647" ref_strand="-" ref_description="SGN-E556647 [cTSD-4-C21]">
      <seq>gttactccagaagaacttgacgagttgattggaatctatgggaaagcattgagggaaattgaaaagagagtagaagaactcaagtctcggaagtatattcgttgacagcacaagcttgaggatggcgaaaaataaaatcaaatgtgtttggatattctgtaaatgtccagagatgaagtaaagaaagtaatataatttttagtccaagttgttttctctttcatattacatgcagtatagttgcaccagttgacttgttgatgaatatatgtatccccttaaccagtaatcaccaaattgcatttcacaaaaaaaatggaattatcaatctatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="20244" stop="21318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20544" g_stop="20567" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20568" i_stop="20707" i_length="140">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20708" g_stop="21018" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="336" r_length="312" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E556647" ref_strand="-">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556647" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20544" e_stop="20567"/>
          <exon e_start="20708" e_stop="21018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACTCCAGAAGAACTTGACGAGGTATGTTTATGGCTTGCATTTATAAATGCATATATGTGTGTGTGTTTTTGCCAGAAATTGCTTTGAGGCCTTACTTTTGTGAATTCATGTTCTGCAAGTCTGATAACCAATTTTTGTGAAAATATTTTCCTTTTGTTCAGTTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCACAAGCTTGACGATGGCGAAAAATAAAATCAAATGTGTTTGGATATTCTGTAAATGTCCAGA-ATGAAGTAAAGAAAGTAATATAATTTTTAGTCCAAGTTGTTTTCTCTTTCATTTTACATGCAGTATAGTTGCACCAGTTGACTTGTTGATGAATATATGTATCCCCTTAACCAGTAATCACCAAATTGCATTTCAC-AAAAAAATCGAATTATCAATCTATATT</genome_strand>
        <mrna_strand>GTTACTCCAGAAGAACTTGACGAG............................................................................................................................................TTGATTGGAATCTATGGGAAAGCATTGAGGGAAATTGAAAAGAGAGTAGAAGAACTCAAGTCTCGGAAGT-ATATTCGTTGACAGCACAAGCTTGAGGATGGCGAAAAATAAAATCAAATGTGTTTGGATATTCTGTAAATGTCCAGAGATGAAGTAAAGAAAGTAATATAATTTTTAGTCCAAGTTGTTTTCTCTTTCATATTACATGCAGTATAGTTGCACCAGTTGACTTGTTGATGAATATATGTATCCCCTTAACCAGTAATCACCAAATTGCATTTCACAAAAAAAATGGAATTATCAATCTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280275" ref_strand="+" ref_description="SGN-E280275 [cLER-1-C23](-)">
      <seq>aatgtgtttgcatattctgtaaatgtccagaatgaagtaaggcaagtaatataatttttagtccgagttgttttctctttcattttacatgcagtatagttgcaccagttgacttgttgatgaatatatggatccccttaaccagtaatcaccaaattgcatttcacaaaaaaatcgaattatcaatctatattcttgtaattaattgggtttttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="+" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="20525" stop="21342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20825" g_stop="21039" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="216" polyA_stop="233"/>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="+" ref_id="SGN-E280275" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>215</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20825" e_stop="21039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGTTTGGATATTCTGTAAATGTCCAGAATGAAGTAAAGAAAGTAATATAATTTTTAGTCCAAGTTGTTTTCTCTTTCATTTTACATGCAGTATAGTTGCACCAGTTGACTTGTTGATGAATATATGTATCCCCTTAACCAGTAATCACCAAATTGCATTTCACAAAAAAATCGAATTATCAATCTATATTCTTGTAATTAATTGGGTTTTT</genome_strand>
        <mrna_strand>AATGTGTTTGCATATTCTGTAAATGTCCAGAATGAAGTAAGGCAAGTAATATAATTTTTAGTCCGAGTTGTTTTCTCTTTCATTTTACATGCAGTATAGTTGCACCAGTTGACTTGTTGATGAATATATGGATCCCCTTAACCAGTAATCACCAAATTGCATTTCACAAAAAAATCGAATTATCAATCTATATTCTTGTAATTAATTGGGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693714" ref_strand="-" ref_description="SGN-E693714 [LH_Ea02A16](-)">
      <seq>tttttttttttttttttttcaaagatactaagcaaccaatttaaacaattttctaaagtttaatacttatcatcccaaaatctgatagtcatcacatcaaggacatctaatctccaatactaagtctaagaatatcgattacactaaaataaaagaataaaatggtatgtgtccgaaagtatatgacatcatgtcatgaccgagagaatccaacacgagcttgaatagatagctcaccctggaacttgatatgcgggaggctggctagagctgagggaaatcagaagtcataggtacacttgctgcatttcataaaagaaaaagaaagaagaaaacaagtagggctcagtacgaggcaacatgtactgagtaagtatcatcggtcaacccaaaatagtaactaatatacaaagaataatagtatgaactcaactatagcacttaacatgtgataagcaacaaacaacatgaacaagtgtcaataacattaaagtaagcacgtattaagtcaacggtatcaagatcacatatgaggactcatgcctccaaaccaaaccattttgggagttgagttctttgagattgagtatctttcattaattcaacatatttatcatttaatattatcgtgtcggaacgtgatactccgatccaagaataccgtgtcggaacgtgacactccgatccaagaataccgtgtcggaacgtgacactccgatccaagaataccgtgtcggaatgtgacactccgatccaagaataccgtgtcggaacgtgacactccgatccaaaaataccgtgtcggaacgtgacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0048H05-g6uFl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0048H05.1" temp_strand="-" temp_description="C07HBa0048H05.1  AC212616.1 htgs_phase:1 submitted_to_sgn_as:gi|158262112|gb|AC212616.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0048H05, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces">
        <position start="32390" stop="27485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32082" g_stop="31816" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="293" r_length="269" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31815" i_stop="30061" i_length="1755">
            <donor d_prob="0.389" d_score="1.00"/>
            <acceptor a_prob="0.602" a_score="0.56"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30060" g_stop="30018" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="331" r_length="38" r_score="0.558"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30017" i_stop="29834" i_length="184">
            <donor d_prob="0.998" d_score="0.56"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29833" g_stop="29829" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="336" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29828" i_stop="28129" i_length="1700">
            <donor d_prob="0.849" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28128" g_stop="27701" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="764" r_length="428" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="19" polyA_stop="1"/>
      <MATCH_line gen_id="C07HBa0048H05.1" gen_strand="-" ref_id="SGN-E693714" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0048H05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693714" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32082" e_stop="31816"/>
          <exon e_start="30060" e_stop="30018"/>
          <exon e_start="29833" e_stop="29829"/>
          <exon e_start="28128" e_stop="27701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTAAGCAACCAATTTAA-TAAGTTTCTAAAGTTTAATACTTATCATCCCAAAATCTGATAGTCATCACATCAAGGACATCTAATCTCCAATACTAATTCTAAGAATATCGAATACACTAAAAT-AAAGAATAAAATGGTATGTGTCCAAAAGTATAGGACATCATGTCGTGACCGAGAGAATCCAACACGAGCTTGAATGGATAGCTCACCCTGTAACTTGATATGCGGGAGGCTGGCTAGAGCTGAGGGAAATCAGAAGTCATAGGTAAGTAGGGCTCAGTACGAGGCAACATGTACTGAGTAAGTATCATCGGTCAACCCAAAATAGTAACTAATATACAAAGAATAATAGTATGAACTCAACTATAGCACTTAACATGTGATAAGCAACAAACAACATGAACAAGTGTCAATAACAATGAAGTAAGCACGTATTAAGTCAATGGTATCAAGATCACACATGAGGACTCATGTCTCCAAACCAAACCATTTTGGGAGTTGAGTTCTTTGAGATTGAATATCTTCCATTAATTCAACATATTTTTCCTTTAATATTATCGTGTCGGAGCGTGACACTCCAATCCAAAAATATCGTGTCGGAACGTGACACTCCGATCCAAGAATACCGTGTCGGAATATGACACTCCGATCCAAGATTACCGTGTCGAAACGTGACACTCCGATCCAAGAATACCGTTAGTTTATTCTTTATTATCACCGCTTTCAATTCATTGTTATATTATTTTCATCAAGCCTTCTTTAATCAAGGCATCACTTCTATAGATAGGATTAGAGAATATAAATTCTACGGTCTCAGGATTTCAGACCAATCACAAACCACACAACCAAATCACACAATCACACAGTCAAGTACATAGAGAACTTCACAATATCATTCAAGGCATATCAATCACTATTAAGAGTTTACTATCAAATAGCATAAACCATAACCTACCTCCACCGAAGAATTGAAGTCAAGTAACTACTTCTCCAATGCCTTTCCTTTCCTTATTGCCTCCGAACCTTTCCAATCTATCAAGTATATATATAAACAATTTGTAAGTTAACGAGTCTATAAACACTCAGATTATTCTATATTTAGCCTAGACCCAAAAACTCACCTAATTATAAAATCAAATTCCTAAAGTTCAAACTAAGGGTAGGTCTTAGTTCCCCTAATTAACATAACTTTAATGAAATATAAATAATTTCATACACCTAATACTTAATTACCTATTTTAATATACTAAACTCAATTTATAAGAGGATGATACGCAGTTTAATTCAAGATTAAGCACTGGTTTCGAACCCTAGTGGCAAAACGTCTAACCCAATTTTACAACTTAGCAATTCTTCTCATCTAATACCTTCTTATCCAACCATAATTAATTTCATACTTCAATGTATAAAACTATAACATATAATAAGGTATAAAATATTTTAATGTCTAAAATTTTAAGTTACTGGTGCCAACCCAGTGGCAGTAAGCTTTTCCACCTGCACATACATACCTTAATCTTCCAATTTGTTTACACATTAATGATTAATGGCTGCCTAACTTTTTCAATCAACAATTTGTACTTAAACCTATATCGTAGCAATTTAGCATTCACCTGAACATTTATAGTTTTACAAGAACTAATATATTCTTTCCACCAATCTGCATGTTACGAATTTATAAAGAAACTTACCGCTAAACGAATCTACGCTTAATCTCTAATGTAGCTGCATAGGTAAGCCGTCTTTCTCAATGTTCTTCTTTTTTTCCCTTTTCTTTTCTTCTACAGATTATTTGTTACCCTAATTATTATACTCATATAATTATAATAGTGATAAAAGTGACCCACTATTAATTATAATATTATTTCTTAACCATTAACTAAATAAATTAGTAAAACTACCCCATATTTCATAATTATAATTATGAATAGTCCAAAACACCCACTTAAATCTATCAGAAAGTATTTTCAAACATAAATATTTCTAGTGCCCAAACCGACTACACGTGTTGTTACAATAGATACCAATTTACTCATCGTTCGTCCTCGAACGATCAAAGGAAGGCAAGGCAAGAAAGGATAGTTATCTCAATGATTATTCCAAAATATTAGTACTCATTGTCTCATCTAAATAGTATCAAAAACTAGAGATCTACACCTCCCCTCATAAAATGTCTCTAATATAATTGCACACATACTTGGTTTATCAAACTCCACATTCATTGAAGTCAACACTCTTAATAATAACAAAACGTATAACTACATCGATCATCTACCTCACTCTCAAACCATCATTAGTATCAAAGTATACTTATCAAATACATGTTCAAACTATGGCTATCTCTTTCTATTTAAGCATTTCCTGACAGATACGAGTCCCAAATAAGGCCTATAGCACTAATTTCAAATGTGATAGTACCTTTTCATTGAGACAAAACTATTAAATCACACCCAAAGTCAACTCTACACCACTTTCACATACCATGGTTAAGGTACCATTTTAAACCATTATATATATCATGCCAACACTTAGGAAAATTCTTTGTCACTCAAACTATTCTGTATACTATAAGCTCATAACCTCTATTAACCATCAAATATCCATGTAACACACCTTAACATTCTATGAAGTCCCATCAATAGAGTAGTATTAACCCAACTTTATTCTTAATAACTATGTAGAATTATATCTCACCTTTTACATCATTCTTAAGTCTTCTATCCTAATTTGAGCAATCTAACCTCATTGTAAAATACTTAAATTTTCATACCTCATTATTTGTCACCTAAACCAAAACTCATTTTTTTTGAAGTCGATAATAAACTCCTAGTAAGTCTGTACCGAACTAGTTCACATCTCACAATTATATCTAAACTCATAGGCAAAAATTAAAACAACCATCAACTACACCCCATGGATTTATACGAGAGGCTTATTCTTTCACTCTTCTCAAATTCTTTTCATGGTGCAAATTCTAAATATCTCGCTCGTTCAATATATCAAACTCTTGTTTATCTAGCTTGCTTACCGATCTCATGTTTTACTTAATAATCCATGACATTTTAATTCACATTCTAAATCAAAACTCAGAAGAAAACTCTTCTTAGATCAATTCAATAACAAAAATAACACACTTCCTAACTCTAACCAAGTAAGCATCGATGACTTTCTCTAATATATCCTCACTCGATGAAGTCATAGTAGTGTCTTTATTAACCGACACTCGACATGAGTTTACCACCACATTTTGCGATCGAGAAAATATATCTATTTCTAAGGACATTTATTTTTGTTGTTGCTATTTCAACTTCAAATACTCTAGTAGTACCCATATTTGAAATAGAGTGAAGAAGTTCAGATACCAATTTGTATCACCTAGATACCAATTGGATTCAAATAGTAGCACGAAAGAAAGAAAGAAATGAGCTTTCCTAAAGTCCTATAGCTTCTCGAAGAAAAGTAAAGGCGTCCCCTTACCATTCCGCAAGACTCTACAAGACTTGTCCTTGTGTGATGAGATCAACGAACCTAACGCTTTGATACCAAGTTTGTCACGACCCAAAACGGGTCGTGAATGGCACCCATACTTACCTCCTTAGGTGGGCGAACGAACAAATCTAAACCCCAACATATACCAATAGTTCAACTATAAATAATATAAATAATGCGGAAGCTCCAAAAGATACTAAGCAACCAATTTAAATAAGTTTCTAAAGTTTAATACTTATCATCCCAAAATCTGATAGTCATCACATCAAGGACATCTAATCTCCAATACTAAGTCTAAGAATATCGAATACACTAAAATAAAGAATAAAATGGTATGTGTCCAAAAGTATAGGACATCATGTCGTGACCGAGAGAATCCAACACGAGCTTGAATGGATAGCTCACCCTGTAACTTGATATGCGGGAGGCTGGCTAGAGCTGAGGGAAATCAGAAGTCATAGGTAAGTAGGGCTCAGTACGAGGCAACATGTACTGAGTAAGTATCATCGGTCAACCCAAAATAGTAACTAATATACAAAGAATAATAGTATGAACTCAACTATAGCACTTAACATGTGATAAACAACAAACAACATGAACAAGTGTCAATAACAATGAAGTAAGCACGTATTAAGTCAATGGTATCAAGATCACACATGAGGACTCATGTCTCCAAACCAAACCATTTTGGGAGTTGAGTTCTTTGAGATTGAATATCTTCCATTAATTCAACATATTTTTCCTTTAATATTATCGTGTCGGAGCGTGACACTCCAATCCAAAAATATCGTGTCGGAACGTGACACTCCGATCCAAGAATACCGTGTCGGAATATGACACTCCGATCCAAGATTACCGTGTCGAAACGTGACACTCCGATCCAAGAATACC</genome_strand>
        <mrna_strand>ATACTAAGCAACCAATTTAAACAATTTTCTAAAGTTTAATACTTATCATCCCAAAATCTGATAGTCATCACATCAAGGACATCTAATCTCCAATACTAAGTCTAAGAATATCGATTACACTAAAATAAAAGAATAAAATGGTATGTGTCCGAAAGTATATGACATCATGTCATGACCGAGAGAATCCAACACGAGCTTGAATAGATAGCTCACCCTGGAACTTGATATGCGGGAGGCTGGCTAGAGCTGAGGGAAATCAGAAGTCATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA-CACTTGCTGCAT--TTCATAAAAGAA-AAAGAAA-GAAG........................................................................................................................................................................................AAAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAGGGCTCAGTACGAGGCAACATGTACTGAGTAAGTATCATCGGTCAACCCAAAATAGTAACTAATATACAAAGAATAATAGTATGAACTCAACTATAGCACTTAACATGTGATAAGCAACAAACAACATGAACAAGTGTCAATAACATTAAAGTAAGCACGTATTAAGTCAACGGTATCAAGATCACATATGAGGACTCATGCCTCCAAACCAAACCATTTTGGGAGTTGAGTTCTTTGAGATTGAGTATCTTTCATTAATTCAACATATTTATCATTTAATATTATCGTGTCGGAACGTGATACTCCGATCCAAGAATACCGTGTCGGAACGTGACACTCCGATCCAAGAATACCGTGTCGGAACGTGACACTCCGATCCAAGAATACCGTGTCGGAATGTGACACTCCGATCCAAGAATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>50</total_number_ESTs_reported>
    </alignment_module>
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    <predicted_gene_location>
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      <AGS_information>
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            <exon e_start="20114" e_stop="20204"/>
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            <exon e_start="20708" e_stop="21041"/>
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        </AGS_line>
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          <exon-intron don_prob="0.990" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.586" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.584" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.992"/>
          <exon-intron don_prob="0.988" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.691" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
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        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
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            <gDNA_exon_boundary e_start="9771" e_stop="9904" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.999">
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          <exon e_serial="2" e_score="1.000">
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          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.984">
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          <exon e_serial="3" e_score="1.000">
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          </exon>
          <intron i_serial="3" don_prob="0.586" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10351" i_stop="11001" i_length="651"/>
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          <exon e_serial="4" e_score="1.000">
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          </exon>
          <intron i_serial="4" don_prob="0.584" acc_prob="0.998">
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          <exon e_serial="5" e_score="1.000">
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          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.974">
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          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.965">
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          <intron i_serial="7" don_prob="0.986" acc_prob="0.930">
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          </exon>
          <intron i_serial="10" don_prob="0.996" acc_prob="0.983">
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          <intron i_serial="12" don_prob="0.988" acc_prob="0.976">
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          </exon>
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            </gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210775" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19863" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="20890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289060" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19930" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="21041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249337" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20185" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="20890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20330" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="21013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20354" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="21028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20463" stop="20567"/>
              <exon start="20708" stop="20997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330763" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20544" stop="20567"/>
              <exon start="20708" stop="21018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556647" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20825" stop="21039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TANGCTGGTTTCCATGGAAAACGTATTCCAGCAGTTAGCAGTTTACAGGAGCATATTGTTAAATCAACACCGGCAAGATATAACAGTACACAGGCATGTTTGGAAACTGATATTTCTGGAACTGATAATAAAGG : GTTCAAGGGTCATGATATGTTGGCACCCTTCACTGCTGGGTGGCAAAGTACTGATGTTGATCCTTTGATTATAGAGAAGTCTGAG : GGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAG : GGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTG : GATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG : GTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC : ATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGG : CCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAG : GTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACA : ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAG : ATCCAAGCTGTAGTGAAGAGATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAG : GCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTG : GTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAA : GGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAG : ATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCCTAATGATCCTTTCCCTCCCGAATGGG : GTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAG : TTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCACAAGCTTGACGATGGCGAAAAATAAAATCAAATGTGTTTGGATATTCTGTAAATGTCCAGAATGAAGTAAAGAAAGTAATATAATTTTTAGTCCAAGTTGTTTTCTCTTTCATTTTACATGCAGTATAGTTGCACCAGTTGACTTGTTGATGAATATATGTATCCCCTTAACCAGTAATCACCAAATTGCATTTCACAAAAAAATCGAATTATCAATCTATATTCTTGTAATTAATTGGGTTTTTAT</gDNA_template>
            <first_frame> Y  A  G  F  H  G  K  R  I  P  A  V  S  S  L  Q  E  H  I  V  K  S  T  P  A  R  Y  N  S  T  Q  A  C  L  E  T  D  I  S  G  T  D  N  K  G :   F  K  G  H  D  M  L  A  P  F  T  A  G  W  Q  S  T  D  V  D  P  L  I  I  E  K  S  E  :  G  S  H  V  Y  D  M  Q  G  R  K  Y  I  D  T  L  A  G  L  W  C  T  A  L   : G  G  N  E  P  R  L  V  D  A  A  T  K  Q  L  N  T  L  P  F  Y  H  S  F  W  N  R  T  T  K  P  S  L  :  D  L  A  K  E  L  L  D  M  F  T  A  K  K  M  A  K  A  F  F  T  N  S  G  S  E  A  N  D  T  Q  :  V  K  L  V  W  Y  Y  N  N  A  L  G  R  P  N  K  K  K  F  I  A  R  A  K  A :   Y  H  G  S  T  L  I  S  A  S  L  T  G :   L  P  A  L  H  Q  N  F  D  L  P  A  P  F  V  L  H  T  D  C  P  H  Y  W  R  Y  H  L  P   : G  E  T  E  E  E  F  S  T  R  L  A  K  N  L  E  D  L  I  L  K  E  G  P  E  T  :  I  A  A  F  I  A  E  P  V  M  G  A  G  G  V  I  P  P  P  A  T  Y  F  D  K  :  I  Q  A  V  V  K  R  Y  D  I  L  F  I  A  D  E  V  I  C  A  F  G  R  L  G  T  M  F  G  S  D  M  Y  N  I  K  P  D  L  V  T  L  A  K  :  A  L  S  S  A  Y  M  P  I  G  A  V  L  V  S  P  E  V  S  D  V  I  H  S  Q  S  N  K  L   : G  S  F  S  H  G  F  T  Y  S  G  H  P  V  A  C  A  V  A  L  E  A  I  K  I  Y  K :   E  R  N  M  V  E  R  V  N  R  I  S  P  K  F  Q  E  G  L  K  A  F  S  D  S  P  I  I  G  E  :  I  R  G  L  G  L  I  L  A  T  E  F  A  N  N  K  S  P  N  D  P  F  P  P  E  W   : G  V  G  A  Y  F  G  A  Q  C  Q  K  N  G  M  L  V  R  V  A  G  D  T  I  M  M  S  P  P  F  V  V  T  P  E  E  L  D  E  :  L  I  R  I  Y  G  K  A  L  R  E  T  E  K  R  V  E  E  L  K  S  Q  K  *  Y  *  L  T  A  Q  A  *  R  W  R  K  I  K  S  N  V  F  G  Y  S  V  N  V  Q  N  E  V  K  K  V  I  *  F  L  V  Q  V  V  F  S  F  I  L  H  A  V  *  L  H  Q  L  T  C  *  *  I  Y  V  S  P  *  P  V  I  T  K  L  H  F  T  K  K  S  N  Y  Q  S  I  F  L  *  L  I  G  F  L  </first_frame>
            <second_frame>  M  L  V  S  M  E  N  V  F  Q  Q  L  A  V  Y  R  S  I  L  L  N  Q  H  R  Q  D  I  T  V  H  R  H  V  W  K  L  I  F  L  E  L  I  I  K   : G  S  R  V  M  I  C  W  H  P  S  L  L  G  G  K  V  L  M  L  I  L  *  L  *  R  S  L  R :   D  P  M  S  M  T  C  K  G  G  S  I  L  I  L  *  L  V  C  G  A  Q  H  *  :  G  G  T  S  L  A  W  L  M  L  P  L  S  N  *  T  H  C  R  F  T  I  H  F  G  T  V  Q  Q  N  L  L  W :   I  L  R  R  S  F  *  I  C  S  L  Q  R  K  W  Q  K  L  F  S  P  I  V  D  Q  K  P  M  I  P  R :   *  S  W  S  G  I  I  T  M  L  L  E  G  Q  T  K  R  N  L  *  L  E  Q  K   : H  I  M  V  Q  L  L  F  L  P  V  S  L   : A  F  L  H  Y  I  K  I  L  I  F  L  L  H  L  F  F  T  P  T  V  L  I  I  G  V  I  I  C  Q  :  V  R  Q  R  R  S  S  P  P  G  W  L  K  I  *  K  I  L  S  S  K  R  G  L  K  Q :   *  L  L  L  L  L  N  Q  S  W  G  Q  E  V  S  Y  L  L  Q  L  P  I  L  I  R :   S  K  L  *  *  R  D  M  T  F  F  S  L  R  M  R  S  S  V  P  L  G  G  L  E  Q  C  L  A  L  T  C  I  T  S  N  L  I  L  S  P  *  Q  R :   L  F  L  L  H  I  C  L  L  E  L  S  L  *  A  P  K  F  L  M  *  F  I  L  K  A  I  N  L  :  V  P  F  P  M  D  S  L  I  L  G  I  L  L  H  A  Q  W  H  W  K  L  L  K  S  T   : R  S  E  I  W  L  R  E  *  I  E  Y  P  Q  S  F  K  K  V  *  R  H  F  L  T  V  P  L  S  E  R :   L  G  D  L  V  *  S  L  P  Q  S  L  R  T  T  N  L  L  M  I  L  S  L  P  N  G  :  V  L  V  H  I  L  E  R  N  V  R  R  M  A  C  W  Y  E  L  L  V  I  P  S  *  C  L  L  H  L  *  L  L  Q  K  N  L  T  S :   *  L  E  S  M  G  K  H  *  G  K  L  K  R  E  *  K  N  S  S  L  R  S  N  I  S  *  Q  H  K  L  D  D  G  E  K  *  N  Q  M  C  L  D  I  L  *  M  S  R  M  K  *  R  K  *  Y  N  F  *  S  K  L  F  S  L  S  F  Y  M  Q  Y  S  C  T  S  *  L  V  D  E  Y  M  Y  P  L  N  Q  *  S  P  N  C  I  S  Q  K  N  R  I  I  N  L  Y  S  C  N  *  L  G  F  Y </second_frame>
            <third_frame>   C  W  F  P  W  K  T  Y  S  S  S  *  Q  F  T  G  A  Y  C  *  I  N  T  G  K  I  *  Q  Y  T  G  M  F  G  N  *  Y  F  W  N  *  *  *  R  :  V  Q  G  S  *  Y  V  G  T  L  H  C  W  V  A  K  Y  *  C  *  S  F  D  Y  R  E  V  *   : G  I  P  C  L  *  H  A  R  E  E  V  Y  *  Y  S  S  W  F  V  V  H  S  T  R :   G  E  R  A  S  P  G  *  C  C  H  *  A  I  K  H  I  A  V  L  P  F  I  L  E  P  Y  N  K  T  F  F   : G  S  C  E  G  A  S  R  Y  V  H  C  K  E  N  G  K  S  F  F  H  Q  *  W  I  R  S  Q  *  Y  P   : G  E  A  G  L  V  L  *  Q  C  S  W  K  A  K  Q  K  E  I  Y  S  S  S  K  S  :  I  S  W  F  N  S  Y  F  C  Q  S  H  W  :  P  S  C  I  T  S  K  F  *  S  S  C  S  I  C  S  S  H  R  L  S  S  L  L  A  L  S  S  A  R :   *  D  R  G  G  V  L  H  Q  V  G  *  K  F  R  R  S  Y  P  Q  R  G  A  *  N   : N  S  C  F  Y  C  *  T  S  H  G  G  R  R  C  H  T  S  S  S  Y  L  F  *  *   : D  P  S  C  S  E  E  I  *  H  S  F  H  C  G  *  G  H  L  C  L  W  E  A  W  N  N  V  W  L  *  H  V  *  H  Q  T  *  S  C  H  L  S  K   : G  S  F  F  C  I  Y  A  Y  W  S  C  P  C  K  P  R  S  F  *  C  N  S  F  S  K  Q  *  T  W :   F  L  F  P  W  I  H  L  F  W  A  S  C  C  M  R  S  G  I  G  S  Y  *  N  L  Q  :  G  A  K  Y  G  *  E  S  K  *  N  I  P  K  V  S  R  R  S  E  G  I  F  *  Q  S  H  Y  R  R   : D  *  G  T  W  F  D  P  C  H  R  V  C  E  Q  Q  I  S  *  *  S  F  P  S  R  M  G :   C  W  C  I  F  W  S  A  M  S  E  E  W  H  V  G  T  S  C  W  *  Y  H  H  D  V  S  S  I  C  S  Y  S  R  R  T  *  R   : V  D  *  N  L  W  E  S  I  E  G  N  *  K  E  S  R  R  T  Q  V  S  E  V  I  L  V  D  S  T  S  L  T  M  A  K  N  K  I  K  C  V  W  I  F  C  K  C  P  E  *  S  K  E  S  N  I  I  F  S  P  S  C  F  L  F  H  F  T  C  S  I  V  A  P  V  D  L  L  M  N  I  C  I  P  L  T  S  N  H  Q  I  A  F  H  K  K  I  E  L  S  I  Y  I  L  V  I  N  W  V  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0048H05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9771" stop="9904"/>
                    <exon start="10111" stop="10195"/>
                    <exon start="10278" stop="10350"/>
                    <exon start="11002" stop="11099"/>
                    <exon start="11213" stop="11305"/>
                    <exon start="11597" stop="11670"/>
                    <exon start="11758" stop="11796"/>
                    <exon start="11886" stop="11974"/>
                    <exon start="12059" stop="12135"/>
                    <exon start="12221" stop="12295"/>
                    <exon start="19468" stop="19599"/>
                    <exon start="19682" stop="19769"/>
                    <exon start="19855" stop="19933"/>
                    <exon start="20114" stop="20204"/>
                    <exon start="20291" stop="20369"/>
                    <exon start="20452" stop="20567"/>
                    <exon start="20708" stop="20779"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1491</number_coding_nucleotides>
                  <number_encoded_amino_acids>497</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YAGFHGKRIPAVSSLQEHIVKSTPARYNSTQACLETDISGTDNKGFKGHDMLAPFTAGWQSTDVDPLIIEKSEGSHVYDMQGRKYIDTLAGLWCTALGGNEPRLVDAATKQLNTLPFYHSFWNRTTKPSLDLAKELLDMFTAKKMAKAFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARAKAYHGSTLISASLTGLPALHQNFDLPAPFVLHTDCPHYWRYHLPGETEEEFSTRLAKNLEDLILKEGPETIAAFIAEPVMGAGGVIPPPATYFDKIQAVVKRYDILFIADEVICAFGRLGTMFGSDMYNIKPDLVTLAKALSSAYMPIGAVLVSPEVSDVIHSQSNKLGSFSHGFTYSGHPVACAVALEAIKIYKERNMVERVNRISPKFQEGLKAFSDSPIIGEIRGLGLILATEFANNKSPNDPFPPEWGVGAYFGAQCQKNGMLVRVAGDTIMMSPPFVVTPEELDELIRIYGKALRETEKRVEELKSQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10110" e_stop="10195"/>
            <exon e_start="10278" e_stop="10350"/>
            <exon e_start="11002" e_stop="11099"/>
            <exon e_start="11213" e_stop="11305"/>
            <exon e_start="11597" e_stop="11670"/>
            <exon e_start="11758" e_stop="11796"/>
            <exon e_start="11886" e_stop="11974"/>
            <exon e_start="12059" e_stop="12135"/>
            <exon e_start="12221" e_stop="12295"/>
            <exon e_start="19468" e_stop="19599"/>
            <exon e_start="19682" e_stop="19769"/>
            <exon e_start="19855" e_stop="19933"/>
            <exon e_start="20114" e_stop="20204"/>
            <exon e_start="20291" e_stop="20369"/>
            <exon e_start="20452" e_stop="20567"/>
            <exon e_start="20708" e_stop="21041"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.586" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.584" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.992"/>
          <exon-intron don_prob="0.988" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.691" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10110" e_stop="10195" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.984">
            <gDNA_intron_boundary i_start="10196" i_stop="10277" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10278" e_stop="10350" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.586" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10351" i_stop="11001" i_length="651"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11002" e_stop="11099" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.584" acc_prob="0.998">
            <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11213" e_stop="11305" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.974">
            <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11597" e_stop="11670" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.965">
            <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="11758" e_stop="11796" e_length="39"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.930">
            <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="11886" e_stop="11974" e_length="89"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="12059" e_stop="12135" e_length="77"/>
          </exon>
          <intron i_serial="8" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="12221" e_stop="12295" e_length="75"/>
          </exon>
          <intron i_serial="9" don_prob="0.996" acc_prob="0.983">
            <gDNA_intron_boundary i_start="12296" i_stop="19467" i_length="7172"/>
          </intron>
          <exon e_serial="10" e_score="0.992">
            <gDNA_exon_boundary e_start="19468" e_stop="19599" e_length="132"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="19600" i_stop="19681" i_length="82"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="19682" e_stop="19769" e_length="88"/>
          </exon>
          <intron i_serial="11" don_prob="0.988" acc_prob="0.976">
            <gDNA_intron_boundary i_start="19770" i_stop="19854" i_length="85"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="19855" e_stop="19933" e_length="79"/>
          </exon>
          <intron i_serial="12" don_prob="0.972" acc_prob="0.691">
            <gDNA_intron_boundary i_start="19934" i_stop="20113" i_length="180"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="20114" e_stop="20204" e_length="91"/>
          </exon>
          <intron i_serial="13" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20205" i_stop="20290" i_length="86"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="20291" e_stop="20369" e_length="79"/>
          </exon>
          <intron i_serial="14" don_prob="0.988" acc_prob="0.936">
            <gDNA_intron_boundary i_start="20370" i_stop="20451" i_length="82"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="20452" e_stop="20567" e_length="116"/>
          </exon>
          <intron i_serial="15" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20568" i_stop="20707" i_length="140"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="20708" e_stop="21041" e_length="334"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10110" stop="10195"/>
              <exon start="10278" stop="10350"/>
              <exon start="11002" stop="11099"/>
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              <exon start="12059" stop="12115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10123" stop="10195"/>
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              <exon start="12221" stop="12289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10156" stop="10195"/>
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              <exon start="11758" stop="11793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10188" stop="10195"/>
              <exon start="10278" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10278" stop="10350"/>
              <exon start="11002" stop="11099"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10279" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11056" stop="11099"/>
              <exon start="11213" stop="11305"/>
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              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11090" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
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              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11252" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11648" stop="11670"/>
              <exon start="11758" stop="11796"/>
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              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11763" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11903" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
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              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11910" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
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              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11941" stop="11974"/>
              <exon start="12059" stop="12135"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296358" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11941" stop="11974"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12061" stop="12135"/>
              <exon start="12221" stop="12295"/>
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              <exon start="20291" stop="20355"/>
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            <referenceDNA id="SGN-E248644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12105" stop="12135"/>
              <exon start="12221" stop="12295"/>
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              <exon start="20708" stop="20733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12221" stop="12295"/>
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              <exon start="19682" stop="19769"/>
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              <exon start="20114" stop="20124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12238" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12263" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19516" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
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              <exon start="20708" stop="20806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19566" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
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              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="20794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19566" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19739" stop="19769"/>
              <exon start="19855" stop="19933"/>
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              <exon start="20708" stop="21021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210775" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19863" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="20890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289060" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19930" stop="19933"/>
              <exon start="20114" stop="20204"/>
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              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="21041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249337" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20185" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="20890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20330" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="21013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20354" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="21028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20463" stop="20567"/>
              <exon start="20708" stop="20997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330763" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20544" stop="20567"/>
              <exon start="20708" stop="21018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556647" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20825" stop="21039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTCAAGGGTCATGATATGTTGGCACCCTTCACTGCTGGGTGGCAAAGTACTGATGTTGATCCTTTGATTATAGAGAAGTCTGAG : GGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAG : GGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTG : GATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG : GTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC : ATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGG : CCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAG : GTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACA : ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAG : ATCCAAGCTGTAGTGAAGAGATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAG : GCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTG : GTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAA : GGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAG : ATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCCTAATGATCCTTTCCCTCCCGAATGGG : GTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAG : TTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCACAAGCTTGACGATGGCGAAAAATAAAATCAAATGTGTTTGGATATTCTGTAAATGTCCAGAATGAAGTAAAGAAAGTAATATAATTTTTAGTCCAAGTTGTTTTCTCTTTCATTTTACATGCAGTATAGTTGCACCAGTTGACTTGTTGATGAATATATGTATCCCCTTAACCAGTAATCACCAAATTGCATTTCACAAAAAAATCGAATTATCAATCTATATTCTTGTAATTAATTGGGTTTTTAT</gDNA_template>
            <first_frame> G  S  R  V  M  I  C  W  H  P  S  L  L  G  G  K  V  L  M  L  I  L  *  L  *  R  S  L  R :   D  P  M  S  M  T  C  K  G  G  S  I  L  I  L  *  L  V  C  G  A  Q  H  *  :  G  G  T  S  L  A  W  L  M  L  P  L  S  N  *  T  H  C  R  F  T  I  H  F  G  T  V  Q  Q  N  L  L  W :   I  L  R  R  S  F  *  I  C  S  L  Q  R  K  W  Q  K  L  F  S  P  I  V  D  Q  K  P  M  I  P  R :   *  S  W  S  G  I  I  T  M  L  L  E  G  Q  T  K  R  N  L  *  L  E  Q  K   : H  I  M  V  Q  L  L  F  L  P  V  S  L   : A  F  L  H  Y  I  K  I  L  I  F  L  L  H  L  F  F  T  P  T  V  L  I  I  G  V  I  I  C  Q  :  V  R  Q  R  R  S  S  P  P  G  W  L  K  I  *  K  I  L  S  S  K  R  G  L  K  Q :   *  L  L  L  L  L  N  Q  S  W  G  Q  E  V  S  Y  L  L  Q  L  P  I  L  I  R :   S  K  L  *  *  R  D  M  T  F  F  S  L  R  M  R  S  S  V  P  L  G  G  L  E  Q  C  L  A  L  T  C  I  T  S  N  L  I  L  S  P  *  Q  R :   L  F  L  L  H  I  C  L  L  E  L  S  L  *  A  P  K  F  L  M  *  F  I  L  K  A  I  N  L  :  V  P  F  P  M  D  S  L  I  L  G  I  L  L  H  A  Q  W  H  W  K  L  L  K  S  T   : R  S  E  I  W  L  R  E  *  I  E  Y  P  Q  S  F  K  K  V  *  R  H  F  L  T  V  P  L  S  E  R :   L  G  D  L  V  *  S  L  P  Q  S  L  R  T  T  N  L  L  M  I  L  S  L  P  N  G  :  V  L  V  H  I  L  E  R  N  V  R  R  M  A  C  W  Y  E  L  L  V  I  P  S  *  C  L  L  H  L  *  L  L  Q  K  N  L  T  S :   *  L  E  S  M  G  K  H  *  G  K  L  K  R  E  *  K  N  S  S  L  R  S  N  I  S  *  Q  H  K  L  D  D  G  E  K  *  N  Q  M  C  L  D  I  L  *  M  S  R  M  K  *  R  K  *  Y  N  F  *  S  K  L  F  S  L  S  F  Y  M  Q  Y  S  C  T  S  *  L  V  D  E  Y  M  Y  P  L  N  Q  *  S  P  N  C  I  S  Q  K  N  R  I  I  N  L  Y  S  C  N  *  L  G  F  Y </first_frame>
            <second_frame>  V  Q  G  S  *  Y  V  G  T  L  H  C  W  V  A  K  Y  *  C  *  S  F  D  Y  R  E  V  *   : G  I  P  C  L  *  H  A  R  E  E  V  Y  *  Y  S  S  W  F  V  V  H  S  T  R :   G  E  R  A  S  P  G  *  C  C  H  *  A  I  K  H  I  A  V  L  P  F  I  L  E  P  Y  N  K  T  F  F   : G  S  C  E  G  A  S  R  Y  V  H  C  K  E  N  G  K  S  F  F  H  Q  *  W  I  R  S  Q  *  Y  P   : G  E  A  G  L  V  L  *  Q  C  S  W  K  A  K  Q  K  E  I  Y  S  S  S  K  S  :  I  S  W  F  N  S  Y  F  C  Q  S  H  W  :  P  S  C  I  T  S  K  F  *  S  S  C  S  I  C  S  S  H  R  L  S  S  L  L  A  L  S  S  A  R :   *  D  R  G  G  V  L  H  Q  V  G  *  K  F  R  R  S  Y  P  Q  R  G  A  *  N   : N  S  C  F  Y  C  *  T  S  H  G  G  R  R  C  H  T  S  S  S  Y  L  F  *  *   : D  P  S  C  S  E  E  I  *  H  S  F  H  C  G  *  G  H  L  C  L  W  E  A  W  N  N  V  W  L  *  H  V  *  H  Q  T  *  S  C  H  L  S  K   : G  S  F  F  C  I  Y  A  Y  W  S  C  P  C  K  P  R  S  F  *  C  N  S  F  S  K  Q  *  T  W :   F  L  F  P  W  I  H  L  F  W  A  S  C  C  M  R  S  G  I  G  S  Y  *  N  L  Q  :  G  A  K  Y  G  *  E  S  K  *  N  I  P  K  V  S  R  R  S  E  G  I  F  *  Q  S  H  Y  R  R   : D  *  G  T  W  F  D  P  C  H  R  V  C  E  Q  Q  I  S  *  *  S  F  P  S  R  M  G :   C  W  C  I  F  W  S  A  M  S  E  E  W  H  V  G  T  S  C  W  *  Y  H  H  D  V  S  S  I  C  S  Y  S  R  R  T  *  R   : V  D  *  N  L  W  E  S  I  E  G  N  *  K  E  S  R  R  T  Q  V  S  E  V  I  L  V  D  S  T  S  L  T  M  A  K  N  K  I  K  C  V  W  I  F  C  K  C  P  E  *  S  K  E  S  N  I  I  F  S  P  S  C  F  L  F  H  F  T  C  S  I  V  A  P  V  D  L  L  M  N  I  C  I  P  L  T  S  N  H  Q  I  A  F  H  K  K  I  E  L  S  I  Y  I  L  V  I  N  W  V  F   </second_frame>
            <third_frame>   F  K  G  H  D  M  L  A  P  F  T  A  G  W  Q  S  T  D  V  D  P  L  I  I  E  K  S  E  :  G  S  H  V  Y  D  M  Q  G  R  K  Y  I  D  T  L  A  G  L  W  C  T  A  L   : G  G  N  E  P  R  L  V  D  A  A  T  K  Q  L  N  T  L  P  F  Y  H  S  F  W  N  R  T  T  K  P  S  L  :  D  L  A  K  E  L  L  D  M  F  T  A  K  K  M  A  K  A  F  F  T  N  S  G  S  E  A  N  D  T  Q  :  V  K  L  V  W  Y  Y  N  N  A  L  G  R  P  N  K  K  K  F  I  A  R  A  K  A :   Y  H  G  S  T  L  I  S  A  S  L  T  G :   L  P  A  L  H  Q  N  F  D  L  P  A  P  F  V  L  H  T  D  C  P  H  Y  W  R  Y  H  L  P   : G  E  T  E  E  E  F  S  T  R  L  A  K  N  L  E  D  L  I  L  K  E  G  P  E  T  :  I  A  A  F  I  A  E  P  V  M  G  A  G  G  V  I  P  P  P  A  T  Y  F  D  K  :  I  Q  A  V  V  K  R  Y  D  I  L  F  I  A  D  E  V  I  C  A  F  G  R  L  G  T  M  F  G  S  D  M  Y  N  I  K  P  D  L  V  T  L  A  K  :  A  L  S  S  A  Y  M  P  I  G  A  V  L  V  S  P  E  V  S  D  V  I  H  S  Q  S  N  K  L   : G  S  F  S  H  G  F  T  Y  S  G  H  P  V  A  C  A  V  A  L  E  A  I  K  I  Y  K :   E  R  N  M  V  E  R  V  N  R  I  S  P  K  F  Q  E  G  L  K  A  F  S  D  S  P  I  I  G  E  :  I  R  G  L  G  L  I  L  A  T  E  F  A  N  N  K  S  P  N  D  P  F  P  P  E  W   : G  V  G  A  Y  F  G  A  Q  C  Q  K  N  G  M  L  V  R  V  A  G  D  T  I  M  M  S  P  P  F  V  V  T  P  E  E  L  D  E  :  L  I  R  I  Y  G  K  A  L  R  E  T  E  K  R  V  E  E  L  K  S  Q  K  *  Y  *  L  T  A  Q  A  *  R  W  R  K  I  K  S  N  V  F  G  Y  S  V  N  V  Q  N  E  V  K  K  V  I  *  F  L  V  Q  V  V  F  S  F  I  L  H  A  V  *  L  H  Q  L  T  C  *  *  I  Y  V  S  P  *  P  V  I  T  K  L  H  F  T  K  K  S  N  Y  Q  S  I  F  L  *  L  I  G  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0048H05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10112" stop="10195"/>
                    <exon start="10278" stop="10350"/>
                    <exon start="11002" stop="11099"/>
                    <exon start="11213" stop="11305"/>
                    <exon start="11597" stop="11670"/>
                    <exon start="11758" stop="11796"/>
                    <exon start="11886" stop="11974"/>
                    <exon start="12059" stop="12135"/>
                    <exon start="12221" stop="12295"/>
                    <exon start="19468" stop="19599"/>
                    <exon start="19682" stop="19769"/>
                    <exon start="19855" stop="19933"/>
                    <exon start="20114" stop="20204"/>
                    <exon start="20291" stop="20369"/>
                    <exon start="20452" stop="20567"/>
                    <exon start="20708" stop="20779"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1356</number_coding_nucleotides>
                  <number_encoded_amino_acids>452</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKGHDMLAPFTAGWQSTDVDPLIIEKSEGSHVYDMQGRKYIDTLAGLWCTALGGNEPRLVDAATKQLNTLPFYHSFWNRTTKPSLDLAKELLDMFTAKKMAKAFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARAKAYHGSTLISASLTGLPALHQNFDLPAPFVLHTDCPHYWRYHLPGETEEEFSTRLAKNLEDLILKEGPETIAAFIAEPVMGAGGVIPPPATYFDKIQAVVKRYDILFIADEVICAFGRLGTMFGSDMYNIKPDLVTLAKALSSAYMPIGAVLVSPEVSDVIHSQSNKLGSFSHGFTYSGHPVACAVALEAIKIYKERNMVERVNRISPKFQEGLKAFSDSPIIGEIRGLGLILATEFANNKSPNDPFPPEWGVGAYFGAQCQKNGMLVRVAGDTIMMSPPFVVTPEELDELIRIYGKALRETEKRVEELKSQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="9771" e_stop="9904"/>
            <exon e_start="10111" e_stop="10195"/>
            <exon e_start="10278" e_stop="10350"/>
            <exon e_start="11002" e_stop="11099"/>
            <exon e_start="11213" e_stop="11305"/>
            <exon e_start="11597" e_stop="11670"/>
            <exon e_start="11758" e_stop="11796"/>
            <exon e_start="11886" e_stop="11974"/>
            <exon e_start="12059" e_stop="12135"/>
            <exon e_start="12221" e_stop="12295"/>
            <exon e_start="19468" e_stop="19599"/>
            <exon e_start="19682" e_stop="19769"/>
            <exon e_start="19855" e_stop="19933"/>
            <exon e_start="20114" e_stop="20204"/>
            <exon e_start="20291" e_stop="20369"/>
            <exon e_start="20439" e_stop="20567"/>
            <exon e_start="20708" e_stop="21039"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.990" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.586" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.584" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.992"/>
          <exon-intron don_prob="0.988" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.691" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="0.954"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.990"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="9771" e_stop="9904" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9905" i_stop="10110" i_length="206"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10111" e_stop="10195" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.984">
            <gDNA_intron_boundary i_start="10196" i_stop="10277" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10278" e_stop="10350" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="0.586" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10351" i_stop="11001" i_length="651"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11002" e_stop="11099" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.584" acc_prob="0.998">
            <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11213" e_stop="11305" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.974">
            <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="11597" e_stop="11670" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.965">
            <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="11758" e_stop="11796" e_length="39"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="0.930">
            <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="11886" e_stop="11974" e_length="89"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="12059" e_stop="12135" e_length="77"/>
          </exon>
          <intron i_serial="9" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="12221" e_stop="12295" e_length="75"/>
          </exon>
          <intron i_serial="10" don_prob="0.996" acc_prob="0.983">
            <gDNA_intron_boundary i_start="12296" i_stop="19467" i_length="7172"/>
          </intron>
          <exon e_serial="11" e_score="0.992">
            <gDNA_exon_boundary e_start="19468" e_stop="19599" e_length="132"/>
          </exon>
          <intron i_serial="11" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="19600" i_stop="19681" i_length="82"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="19682" e_stop="19769" e_length="88"/>
          </exon>
          <intron i_serial="12" don_prob="0.988" acc_prob="0.976">
            <gDNA_intron_boundary i_start="19770" i_stop="19854" i_length="85"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="19855" e_stop="19933" e_length="79"/>
          </exon>
          <intron i_serial="13" don_prob="0.972" acc_prob="0.691">
            <gDNA_intron_boundary i_start="19934" i_stop="20113" i_length="180"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="20114" e_stop="20204" e_length="91"/>
          </exon>
          <intron i_serial="14" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20205" i_stop="20290" i_length="86"/>
          </intron>
          <exon e_serial="15" e_score="0.954">
            <gDNA_exon_boundary e_start="20291" e_stop="20369" e_length="79"/>
          </exon>
          <intron i_serial="15" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20370" i_stop="20438" i_length="69"/>
          </intron>
          <exon e_serial="16" e_score="0.990">
            <gDNA_exon_boundary e_start="20439" e_stop="20567" e_length="129"/>
          </exon>
          <intron i_serial="16" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20568" i_stop="20707" i_length="140"/>
          </intron>
          <exon e_serial="17" e_score="0.990">
            <gDNA_exon_boundary e_start="20708" e_stop="21039" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9771" stop="9904"/>
              <exon start="10111" stop="10195"/>
              <exon start="10278" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9772" stop="9904"/>
              <exon start="10111" stop="10195"/>
              <exon start="10278" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9772" stop="9904"/>
              <exon start="10111" stop="10195"/>
              <exon start="10278" stop="10300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9780" stop="9904"/>
              <exon start="10111" stop="10195"/>
              <exon start="10278" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9812" stop="9904"/>
              <exon start="10111" stop="10195"/>
              <exon start="10278" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9830" stop="9904"/>
              <exon start="10111" stop="10195"/>
              <exon start="10278" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9878" stop="9904"/>
              <exon start="10111" stop="10195"/>
              <exon start="10278" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10123" stop="10195"/>
              <exon start="10278" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10156" stop="10195"/>
              <exon start="10278" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10188" stop="10195"/>
              <exon start="10278" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10278" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10279" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11056" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11090" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11252" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11648" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11763" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11903" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11941" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296358" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11941" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12061" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12238" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12263" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20439" stop="20503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12263" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20463" stop="20567"/>
              <exon start="20708" stop="20997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330763" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20544" stop="20567"/>
              <exon start="20708" stop="21018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556647" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20825" stop="21039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TANGCTGGTTTCCATGGAAAACGTATTCCAGCAGTTAGCAGTTTACAGGAGCATATTGTTAAATCAACACCGGCAAGATATAACAGTACACAGGCATGTTTGGAAACTGATATTTCTGGAACTGATAATAAAGG : GTTCAAGGGTCATGATATGTTGGCACCCTTCACTGCTGGGTGGCAAAGTACTGATGTTGATCCTTTGATTATAGAGAAGTCTGAG : GGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAG : GGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTG : GATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG : GTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC : ATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGG : CCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAG : GTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACA : ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAG : ATCCAAGCTGTAGTGAAGAGATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAG : GCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTG : GTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAA : GGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAG : ATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCCTAATGATCCTTTCCCTCCCGAATGGG : ATTGCCGCCTCAGGTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAG : TTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCACAAGCTTGACGATGGCGAAAAATAAAATCAAATGTGTTTGGATATTCTGTAAATGTCCAGAATGAAGTAAAGAAAGTAATATAATTTTTAGTCCAAGTTGTTTTCTCTTTCATTTTACATGCAGTATAGTTGCACCAGTTGACTTGTTGATGAATATATGTATCCCCTTAACCAGTAATCACCAAATTGCATTTCACAAAAAAATCGAATTATCAATCTATATTCTTGTAATTAATTGGGTTTTT</gDNA_template>
            <first_frame> Y  A  G  F  H  G  K  R  I  P  A  V  S  S  L  Q  E  H  I  V  K  S  T  P  A  R  Y  N  S  T  Q  A  C  L  E  T  D  I  S  G  T  D  N  K  G :   F  K  G  H  D  M  L  A  P  F  T  A  G  W  Q  S  T  D  V  D  P  L  I  I  E  K  S  E  :  G  S  H  V  Y  D  M  Q  G  R  K  Y  I  D  T  L  A  G  L  W  C  T  A  L   : G  G  N  E  P  R  L  V  D  A  A  T  K  Q  L  N  T  L  P  F  Y  H  S  F  W  N  R  T  T  K  P  S  L  :  D  L  A  K  E  L  L  D  M  F  T  A  K  K  M  A  K  A  F  F  T  N  S  G  S  E  A  N  D  T  Q  :  V  K  L  V  W  Y  Y  N  N  A  L  G  R  P  N  K  K  K  F  I  A  R  A  K  A :   Y  H  G  S  T  L  I  S  A  S  L  T  G :   L  P  A  L  H  Q  N  F  D  L  P  A  P  F  V  L  H  T  D  C  P  H  Y  W  R  Y  H  L  P   : G  E  T  E  E  E  F  S  T  R  L  A  K  N  L  E  D  L  I  L  K  E  G  P  E  T  :  I  A  A  F  I  A  E  P  V  M  G  A  G  G  V  I  P  P  P  A  T  Y  F  D  K  :  I  Q  A  V  V  K  R  Y  D  I  L  F  I  A  D  E  V  I  C  A  F  G  R  L  G  T  M  F  G  S  D  M  Y  N  I  K  P  D  L  V  T  L  A  K  :  A  L  S  S  A  Y  M  P  I  G  A  V  L  V  S  P  E  V  S  D  V  I  H  S  Q  S  N  K  L   : G  S  F  S  H  G  F  T  Y  S  G  H  P  V  A  C  A  V  A  L  E  A  I  K  I  Y  K :   E  R  N  M  V  E  R  V  N  R  I  S  P  K  F  Q  E  G  L  K  A  F  S  D  S  P  I  I  G  E  :  I  R  G  L  G  L  I  L  A  T  E  F  A  N  N  K  S  P  N  D  P  F  P  P  E  W   : D  C  R  L  R  C  W  C  I  F  W  S  A  M  S  E  E  W  H  V  G  T  S  C  W  *  Y  H  H  D  V  S  S  I  C  S  Y  S  R  R  T  *  R   : V  D  *  N  L  W  E  S  I  E  G  N  *  K  E  S  R  R  T  Q  V  S  E  V  I  L  V  D  S  T  S  L  T  M  A  K  N  K  I  K  C  V  W  I  F  C  K  C  P  E  *  S  K  E  S  N  I  I  F  S  P  S  C  F  L  F  H  F  T  C  S  I  V  A  P  V  D  L  L  M  N  I  C  I  P  L  T  S  N  H  Q  I  A  F  H  K  K  I  E  L  S  I  Y  I  L  V  I  N  W  V  F </first_frame>
            <second_frame>  M  L  V  S  M  E  N  V  F  Q  Q  L  A  V  Y  R  S  I  L  L  N  Q  H  R  Q  D  I  T  V  H  R  H  V  W  K  L  I  F  L  E  L  I  I  K   : G  S  R  V  M  I  C  W  H  P  S  L  L  G  G  K  V  L  M  L  I  L  *  L  *  R  S  L  R :   D  P  M  S  M  T  C  K  G  G  S  I  L  I  L  *  L  V  C  G  A  Q  H  *  :  G  G  T  S  L  A  W  L  M  L  P  L  S  N  *  T  H  C  R  F  T  I  H  F  G  T  V  Q  Q  N  L  L  W :   I  L  R  R  S  F  *  I  C  S  L  Q  R  K  W  Q  K  L  F  S  P  I  V  D  Q  K  P  M  I  P  R :   *  S  W  S  G  I  I  T  M  L  L  E  G  Q  T  K  R  N  L  *  L  E  Q  K   : H  I  M  V  Q  L  L  F  L  P  V  S  L   : A  F  L  H  Y  I  K  I  L  I  F  L  L  H  L  F  F  T  P  T  V  L  I  I  G  V  I  I  C  Q  :  V  R  Q  R  R  S  S  P  P  G  W  L  K  I  *  K  I  L  S  S  K  R  G  L  K  Q :   *  L  L  L  L  L  N  Q  S  W  G  Q  E  V  S  Y  L  L  Q  L  P  I  L  I  R :   S  K  L  *  *  R  D  M  T  F  F  S  L  R  M  R  S  S  V  P  L  G  G  L  E  Q  C  L  A  L  T  C  I  T  S  N  L  I  L  S  P  *  Q  R :   L  F  L  L  H  I  C  L  L  E  L  S  L  *  A  P  K  F  L  M  *  F  I  L  K  A  I  N  L  :  V  P  F  P  M  D  S  L  I  L  G  I  L  L  H  A  Q  W  H  W  K  L  L  K  S  T   : R  S  E  I  W  L  R  E  *  I  E  Y  P  Q  S  F  K  K  V  *  R  H  F  L  T  V  P  L  S  E  R :   L  G  D  L  V  *  S  L  P  Q  S  L  R  T  T  N  L  L  M  I  L  S  L  P  N  G  :  I  A  A  S  G  V  G  A  Y  F  G  A  Q  C  Q  K  N  G  M  L  V  R  V  A  G  D  T  I  M  M  S  P  P  F  V  V  T  P  E  E  L  D  E  :  L  I  R  I  Y  G  K  A  L  R  E  T  E  K  R  V  E  E  L  K  S  Q  K  *  Y  *  L  T  A  Q  A  *  R  W  R  K  I  K  S  N  V  F  G  Y  S  V  N  V  Q  N  E  V  K  K  V  I  *  F  L  V  Q  V  V  F  S  F  I  L  H  A  V  *  L  H  Q  L  T  C  *  *  I  Y  V  S  P  *  P  V  I  T  K  L  H  F  T  K  K  S  N  Y  Q  S  I  F  L  *  L  I  G  F   </second_frame>
            <third_frame>   C  W  F  P  W  K  T  Y  S  S  S  *  Q  F  T  G  A  Y  C  *  I  N  T  G  K  I  *  Q  Y  T  G  M  F  G  N  *  Y  F  W  N  *  *  *  R  :  V  Q  G  S  *  Y  V  G  T  L  H  C  W  V  A  K  Y  *  C  *  S  F  D  Y  R  E  V  *   : G  I  P  C  L  *  H  A  R  E  E  V  Y  *  Y  S  S  W  F  V  V  H  S  T  R :   G  E  R  A  S  P  G  *  C  C  H  *  A  I  K  H  I  A  V  L  P  F  I  L  E  P  Y  N  K  T  F  F   : G  S  C  E  G  A  S  R  Y  V  H  C  K  E  N  G  K  S  F  F  H  Q  *  W  I  R  S  Q  *  Y  P   : G  E  A  G  L  V  L  *  Q  C  S  W  K  A  K  Q  K  E  I  Y  S  S  S  K  S  :  I  S  W  F  N  S  Y  F  C  Q  S  H  W  :  P  S  C  I  T  S  K  F  *  S  S  C  S  I  C  S  S  H  R  L  S  S  L  L  A  L  S  S  A  R :   *  D  R  G  G  V  L  H  Q  V  G  *  K  F  R  R  S  Y  P  Q  R  G  A  *  N   : N  S  C  F  Y  C  *  T  S  H  G  G  R  R  C  H  T  S  S  S  Y  L  F  *  *   : D  P  S  C  S  E  E  I  *  H  S  F  H  C  G  *  G  H  L  C  L  W  E  A  W  N  N  V  W  L  *  H  V  *  H  Q  T  *  S  C  H  L  S  K   : G  S  F  F  C  I  Y  A  Y  W  S  C  P  C  K  P  R  S  F  *  C  N  S  F  S  K  Q  *  T  W :   F  L  F  P  W  I  H  L  F  W  A  S  C  C  M  R  S  G  I  G  S  Y  *  N  L  Q  :  G  A  K  Y  G  *  E  S  K  *  N  I  P  K  V  S  R  R  S  E  G  I  F  *  Q  S  H  Y  R  R   : D  *  G  T  W  F  D  P  C  H  R  V  C  E  Q  Q  I  S  *  *  S  F  P  S  R  M  G :   L  P  P  Q  V  L  V  H  I  L  E  R  N  V  R  R  M  A  C  W  Y  E  L  L  V  I  P  S  *  C  L  L  H  L  *  L  L  Q  K  N  L  T  S :   *  L  E  S  M  G  K  H  *  G  K  L  K  R  E  *  K  N  S  S  L  R  S  N  I  S  *  Q  H  K  L  D  D  G  E  K  *  N  Q  M  C  L  D  I  L  *  M  S  R  M  K  *  R  K  *  Y  N  F  *  S  K  L  F  S  L  S  F  Y  M  Q  Y  S  C  T  S  *  L  V  D  E  Y  M  Y  P  L  N  Q  *  S  P  N  C  I  S  Q  K  N  R  I  I  N  L  Y  S  C  N  *  L  G  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0048H05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9771" stop="9904"/>
                    <exon start="10111" stop="10195"/>
                    <exon start="10278" stop="10350"/>
                    <exon start="11002" stop="11099"/>
                    <exon start="11213" stop="11305"/>
                    <exon start="11597" stop="11670"/>
                    <exon start="11758" stop="11796"/>
                    <exon start="11886" stop="11974"/>
                    <exon start="12059" stop="12135"/>
                    <exon start="12221" stop="12295"/>
                    <exon start="19468" stop="19599"/>
                    <exon start="19682" stop="19769"/>
                    <exon start="19855" stop="19933"/>
                    <exon start="20114" stop="20204"/>
                    <exon start="20291" stop="20369"/>
                    <exon start="20439" stop="20515"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1380</number_coding_nucleotides>
                  <number_encoded_amino_acids>460</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YAGFHGKRIPAVSSLQEHIVKSTPARYNSTQACLETDISGTDNKGFKGHDMLAPFTAGWQSTDVDPLIIEKSEGSHVYDMQGRKYIDTLAGLWCTALGGNEPRLVDAATKQLNTLPFYHSFWNRTTKPSLDLAKELLDMFTAKKMAKAFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARAKAYHGSTLISASLTGLPALHQNFDLPAPFVLHTDCPHYWRYHLPGETEEEFSTRLAKNLEDLILKEGPETIAAFIAEPVMGAGGVIPPPATYFDKIQAVVKRYDILFIADEVICAFGRLGTMFGSDMYNIKPDLVTLAKALSSAYMPIGAVLVSPEVSDVIHSQSNKLGSFSHGFTYSGHPVACAVALEAIKIYKERNMVERVNRISPKFQEGLKAFSDSPIIGEIRGLGLILATEFANNKSPNDPFPPEWDCRLRCWCIFWSAMSEEWHVGTSCW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="10992" e_stop="11099"/>
            <exon e_start="11213" e_stop="11305"/>
            <exon e_start="11597" e_stop="11670"/>
            <exon e_start="11758" e_stop="11796"/>
            <exon e_start="11886" e_stop="11974"/>
            <exon e_start="12059" e_stop="12135"/>
            <exon e_start="12221" e_stop="12295"/>
            <exon e_start="19468" e_stop="19599"/>
            <exon e_start="19682" e_stop="19769"/>
            <exon e_start="19855" e_stop="19933"/>
            <exon e_start="20114" e_stop="20204"/>
            <exon e_start="20291" e_stop="20369"/>
            <exon e_start="20452" e_stop="20567"/>
            <exon e_start="20708" e_stop="21041"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.584" acc_prob="0.998" e_score="0.971"/>
          <exon-intron don_prob="0.993" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.992"/>
          <exon-intron don_prob="0.988" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.691" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="10992" e_stop="11099" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.584" acc_prob="0.998">
            <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11213" e_stop="11305" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.974">
            <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11597" e_stop="11670" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.965">
            <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11758" e_stop="11796" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.930">
            <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11886" e_stop="11974" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12059" e_stop="12135" e_length="77"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="12221" e_stop="12295" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.983">
            <gDNA_intron_boundary i_start="12296" i_stop="19467" i_length="7172"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
            <gDNA_exon_boundary e_start="19468" e_stop="19599" e_length="132"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="19600" i_stop="19681" i_length="82"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="19682" e_stop="19769" e_length="88"/>
          </exon>
          <intron i_serial="9" don_prob="0.988" acc_prob="0.976">
            <gDNA_intron_boundary i_start="19770" i_stop="19854" i_length="85"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="19855" e_stop="19933" e_length="79"/>
          </exon>
          <intron i_serial="10" don_prob="0.972" acc_prob="0.691">
            <gDNA_intron_boundary i_start="19934" i_stop="20113" i_length="180"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="20114" e_stop="20204" e_length="91"/>
          </exon>
          <intron i_serial="11" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20205" i_stop="20290" i_length="86"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="20291" e_stop="20369" e_length="79"/>
          </exon>
          <intron i_serial="12" don_prob="0.988" acc_prob="0.936">
            <gDNA_intron_boundary i_start="20370" i_stop="20451" i_length="82"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="20452" e_stop="20567" e_length="116"/>
          </exon>
          <intron i_serial="13" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20568" i_stop="20707" i_length="140"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="20708" e_stop="21041" e_length="334"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10992" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10996" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11056" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11090" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11252" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11648" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11763" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11903" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11910" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11941" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296358" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11941" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12061" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12105" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="20733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12238" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12263" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19516" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="20806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19566" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="20794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19566" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19739" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="21021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210775" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19863" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="20890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289060" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19930" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="21041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249337" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20185" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="20890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20330" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="21013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20354" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="21028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20463" stop="20567"/>
              <exon start="20708" stop="20997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330763" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20544" stop="20567"/>
              <exon start="20708" stop="21018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556647" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20825" stop="21039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCTTGTANGGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTG : GATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG : GTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC : ATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGG : CCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAG : GTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACA : ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAG : ATCCAAGCTGTAGTGAAGAGATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAG : GCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTG : GTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAA : GGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAG : ATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCCTAATGATCCTTTCCCTCCCGAATGGG : GTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAG : TTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCACAAGCTTGACGATGGCGAAAAATAAAATCAAATGTGTTTGGATATTCTGTAAATGTCCAGAATGAAGTAAAGAAAGTAATATAATTTTTAGTCCAAGTTGTTTTCTCTTTCATTTTACATGCAGTATAGTTGCACCAGTTGACTTGTTGATGAATATATGTATCCCCTTAACCAGTAATCACCAAATTGCATTTCACAAAAAAATCGAATTATCAATCTATATTCTTGTAATTAATTGGGTTTTTAT</gDNA_template>
            <first_frame> I  L  V  W  G  N  E  P  R  L  V  D  A  A  T  K  Q  L  N  T  L  P  F  Y  H  S  F  W  N  R  T  T  K  P  S  L  :  D  L  A  K  E  L  L  D  M  F  T  A  K  K  M  A  K  A  F  F  T  N  S  G  S  E  A  N  D  T  Q  :  V  K  L  V  W  Y  Y  N  N  A  L  G  R  P  N  K  K  K  F  I  A  R  A  K  A :   Y  H  G  S  T  L  I  S  A  S  L  T  G :   L  P  A  L  H  Q  N  F  D  L  P  A  P  F  V  L  H  T  D  C  P  H  Y  W  R  Y  H  L  P   : G  E  T  E  E  E  F  S  T  R  L  A  K  N  L  E  D  L  I  L  K  E  G  P  E  T  :  I  A  A  F  I  A  E  P  V  M  G  A  G  G  V  I  P  P  P  A  T  Y  F  D  K  :  I  Q  A  V  V  K  R  Y  D  I  L  F  I  A  D  E  V  I  C  A  F  G  R  L  G  T  M  F  G  S  D  M  Y  N  I  K  P  D  L  V  T  L  A  K  :  A  L  S  S  A  Y  M  P  I  G  A  V  L  V  S  P  E  V  S  D  V  I  H  S  Q  S  N  K  L   : G  S  F  S  H  G  F  T  Y  S  G  H  P  V  A  C  A  V  A  L  E  A  I  K  I  Y  K :   E  R  N  M  V  E  R  V  N  R  I  S  P  K  F  Q  E  G  L  K  A  F  S  D  S  P  I  I  G  E  :  I  R  G  L  G  L  I  L  A  T  E  F  A  N  N  K  S  P  N  D  P  F  P  P  E  W   : G  V  G  A  Y  F  G  A  Q  C  Q  K  N  G  M  L  V  R  V  A  G  D  T  I  M  M  S  P  P  F  V  V  T  P  E  E  L  D  E  :  L  I  R  I  Y  G  K  A  L  R  E  T  E  K  R  V  E  E  L  K  S  Q  K  *  Y  *  L  T  A  Q  A  *  R  W  R  K  I  K  S  N  V  F  G  Y  S  V  N  V  Q  N  E  V  K  K  V  I  *  F  L  V  Q  V  V  F  S  F  I  L  H  A  V  *  L  H  Q  L  T  C  *  *  I  Y  V  S  P  *  P  V  I  T  K  L  H  F  T  K  K  S  N  Y  Q  S  I  F  L  *  L  I  G  F  L  </first_frame>
            <second_frame>  F  L  Y  G  G  T  S  L  A  W  L  M  L  P  L  S  N  *  T  H  C  R  F  T  I  H  F  G  T  V  Q  Q  N  L  L  W :   I  L  R  R  S  F  *  I  C  S  L  Q  R  K  W  Q  K  L  F  S  P  I  V  D  Q  K  P  M  I  P  R :   *  S  W  S  G  I  I  T  M  L  L  E  G  Q  T  K  R  N  L  *  L  E  Q  K   : H  I  M  V  Q  L  L  F  L  P  V  S  L   : A  F  L  H  Y  I  K  I  L  I  F  L  L  H  L  F  F  T  P  T  V  L  I  I  G  V  I  I  C  Q  :  V  R  Q  R  R  S  S  P  P  G  W  L  K  I  *  K  I  L  S  S  K  R  G  L  K  Q :   *  L  L  L  L  L  N  Q  S  W  G  Q  E  V  S  Y  L  L  Q  L  P  I  L  I  R :   S  K  L  *  *  R  D  M  T  F  F  S  L  R  M  R  S  S  V  P  L  G  G  L  E  Q  C  L  A  L  T  C  I  T  S  N  L  I  L  S  P  *  Q  R :   L  F  L  L  H  I  C  L  L  E  L  S  L  *  A  P  K  F  L  M  *  F  I  L  K  A  I  N  L  :  V  P  F  P  M  D  S  L  I  L  G  I  L  L  H  A  Q  W  H  W  K  L  L  K  S  T   : R  S  E  I  W  L  R  E  *  I  E  Y  P  Q  S  F  K  K  V  *  R  H  F  L  T  V  P  L  S  E  R :   L  G  D  L  V  *  S  L  P  Q  S  L  R  T  T  N  L  L  M  I  L  S  L  P  N  G  :  V  L  V  H  I  L  E  R  N  V  R  R  M  A  C  W  Y  E  L  L  V  I  P  S  *  C  L  L  H  L  *  L  L  Q  K  N  L  T  S :   *  L  E  S  M  G  K  H  *  G  K  L  K  R  E  *  K  N  S  S  L  R  S  N  I  S  *  Q  H  K  L  D  D  G  E  K  *  N  Q  M  C  L  D  I  L  *  M  S  R  M  K  *  R  K  *  Y  N  F  *  S  K  L  F  S  L  S  F  Y  M  Q  Y  S  C  T  S  *  L  V  D  E  Y  M  Y  P  L  N  Q  *  S  P  N  C  I  S  Q  K  N  R  I  I  N  L  Y  S  C  N  *  L  G  F  Y </second_frame>
            <third_frame>   S  C  M  G  E  R  A  S  P  G  *  C  C  H  *  A  I  K  H  I  A  V  L  P  F  I  L  E  P  Y  N  K  T  F  F   : G  S  C  E  G  A  S  R  Y  V  H  C  K  E  N  G  K  S  F  F  H  Q  *  W  I  R  S  Q  *  Y  P   : G  E  A  G  L  V  L  *  Q  C  S  W  K  A  K  Q  K  E  I  Y  S  S  S  K  S  :  I  S  W  F  N  S  Y  F  C  Q  S  H  W  :  P  S  C  I  T  S  K  F  *  S  S  C  S  I  C  S  S  H  R  L  S  S  L  L  A  L  S  S  A  R :   *  D  R  G  G  V  L  H  Q  V  G  *  K  F  R  R  S  Y  P  Q  R  G  A  *  N   : N  S  C  F  Y  C  *  T  S  H  G  G  R  R  C  H  T  S  S  S  Y  L  F  *  *   : D  P  S  C  S  E  E  I  *  H  S  F  H  C  G  *  G  H  L  C  L  W  E  A  W  N  N  V  W  L  *  H  V  *  H  Q  T  *  S  C  H  L  S  K   : G  S  F  F  C  I  Y  A  Y  W  S  C  P  C  K  P  R  S  F  *  C  N  S  F  S  K  Q  *  T  W :   F  L  F  P  W  I  H  L  F  W  A  S  C  C  M  R  S  G  I  G  S  Y  *  N  L  Q  :  G  A  K  Y  G  *  E  S  K  *  N  I  P  K  V  S  R  R  S  E  G  I  F  *  Q  S  H  Y  R  R   : D  *  G  T  W  F  D  P  C  H  R  V  C  E  Q  Q  I  S  *  *  S  F  P  S  R  M  G :   C  W  C  I  F  W  S  A  M  S  E  E  W  H  V  G  T  S  C  W  *  Y  H  H  D  V  S  S  I  C  S  Y  S  R  R  T  *  R   : V  D  *  N  L  W  E  S  I  E  G  N  *  K  E  S  R  R  T  Q  V  S  E  V  I  L  V  D  S  T  S  L  T  M  A  K  N  K  I  K  C  V  W  I  F  C  K  C  P  E  *  S  K  E  S  N  I  I  F  S  P  S  C  F  L  F  H  F  T  C  S  I  V  A  P  V  D  L  L  M  N  I  C  I  P  L  T  S  N  H  Q  I  A  F  H  K  K  I  E  L  S  I  Y  I  L  V  I  N  W  V  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0048H05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10992" stop="11099"/>
                    <exon start="11213" stop="11305"/>
                    <exon start="11597" stop="11670"/>
                    <exon start="11758" stop="11796"/>
                    <exon start="11886" stop="11974"/>
                    <exon start="12059" stop="12135"/>
                    <exon start="12221" stop="12295"/>
                    <exon start="19468" stop="19599"/>
                    <exon start="19682" stop="19769"/>
                    <exon start="19855" stop="19933"/>
                    <exon start="20114" stop="20204"/>
                    <exon start="20291" stop="20369"/>
                    <exon start="20452" stop="20567"/>
                    <exon start="20708" stop="20779"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1209</number_coding_nucleotides>
                  <number_encoded_amino_acids>403</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILVWGNEPRLVDAATKQLNTLPFYHSFWNRTTKPSLDLAKELLDMFTAKKMAKAFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARAKAYHGSTLISASLTGLPALHQNFDLPAPFVLHTDCPHYWRYHLPGETEEEFSTRLAKNLEDLILKEGPETIAAFIAEPVMGAGGVIPPPATYFDKIQAVVKRYDILFIADEVICAFGRLGTMFGSDMYNIKPDLVTLAKALSSAYMPIGAVLVSPEVSDVIHSQSNKLGSFSHGFTYSGHPVACAVALEAIKIYKERNMVERVNRISPKFQEGLKAFSDSPIIGEIRGLGLILATEFANNKSPNDPFPPEWGVGAYFGAQCQKNGMLVRVAGDTIMMSPPFVVTPEELDELIRIYGKALRETEKRVEELKSQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="11587" e_stop="11670"/>
            <exon e_start="11758" e_stop="11796"/>
            <exon e_start="11886" e_stop="11974"/>
            <exon e_start="12059" e_stop="12135"/>
            <exon e_start="12221" e_stop="12295"/>
            <exon e_start="19468" e_stop="19599"/>
            <exon e_start="19682" e_stop="19769"/>
            <exon e_start="19855" e_stop="19933"/>
            <exon e_start="20114" e_stop="20204"/>
            <exon e_start="20291" e_stop="20369"/>
            <exon e_start="20452" e_stop="20567"/>
            <exon e_start="20708" e_stop="21041"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.965" e_score="0.976"/>
          <exon-intron don_prob="0.986" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.992"/>
          <exon-intron don_prob="0.988" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.691" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="11587" e_stop="11670" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.965">
            <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11758" e_stop="11796" e_length="39"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.930">
            <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11886" e_stop="11974" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12059" e_stop="12135" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12221" e_stop="12295" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.983">
            <gDNA_intron_boundary i_start="12296" i_stop="19467" i_length="7172"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="19468" e_stop="19599" e_length="132"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="19600" i_stop="19681" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19682" e_stop="19769" e_length="88"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.976">
            <gDNA_intron_boundary i_start="19770" i_stop="19854" i_length="85"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19855" e_stop="19933" e_length="79"/>
          </exon>
          <intron i_serial="8" don_prob="0.972" acc_prob="0.691">
            <gDNA_intron_boundary i_start="19934" i_stop="20113" i_length="180"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="20114" e_stop="20204" e_length="91"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20205" i_stop="20290" i_length="86"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="20291" e_stop="20369" e_length="79"/>
          </exon>
          <intron i_serial="10" don_prob="0.988" acc_prob="0.936">
            <gDNA_intron_boundary i_start="20370" i_stop="20451" i_length="82"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="20452" e_stop="20567" e_length="116"/>
          </exon>
          <intron i_serial="11" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20568" i_stop="20707" i_length="140"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="20708" e_stop="21041" e_length="334"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11587" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11648" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11763" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11903" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11910" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11941" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296358" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11941" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12061" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12105" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="20733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12221" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12238" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12263" stop="12295"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19516" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="20806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19566" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="20794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19566" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19739" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="21021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210775" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19863" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="20890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289060" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19930" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="21041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249337" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20185" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="20890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20330" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="21013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20354" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="21028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20463" stop="20567"/>
              <exon start="20708" stop="20997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330763" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20544" stop="20567"/>
              <exon start="20708" stop="21018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556647" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20825" stop="21039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAATGTAGGTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC : ATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGG : CCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAG : GTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACA : ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAG : ATCCAAGCTGTAGTGAAGAGATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAG : GCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTG : GTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAA : GGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAG : ATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCCTAATGATCCTTTCCCTCCCGAATGGG : GTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAG : TTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCACAAGCTTGACGATGGCGAAAAATAAAATCAAATGTGTTTGGATATTCTGTAAATGTCCAGAATGAAGTAAAGAAAGTAATATAATTTTTAGTCCAAGTTGTTTTCTCTTTCATTTTACATGCAGTATAGTTGCACCAGTTGACTTGTTGATGAATATATGTATCCCCTTAACCAGTAATCACCAAATTGCATTTCACAAAAAAATCGAATTATCAATCTATATTCTTGTAATTAATTGGGTTTTTAT</gDNA_template>
            <first_frame> S  N  V  G  E  A  G  L  V  L  *  Q  C  S  W  K  A  K  Q  K  E  I  Y  S  S  S  K  S  :  I  S  W  F  N  S  Y  F  C  Q  S  H  W  :  P  S  C  I  T  S  K  F  *  S  S  C  S  I  C  S  S  H  R  L  S  S  L  L  A  L  S  S  A  R :   *  D  R  G  G  V  L  H  Q  V  G  *  K  F  R  R  S  Y  P  Q  R  G  A  *  N   : N  S  C  F  Y  C  *  T  S  H  G  G  R  R  C  H  T  S  S  S  Y  L  F  *  *   : D  P  S  C  S  E  E  I  *  H  S  F  H  C  G  *  G  H  L  C  L  W  E  A  W  N  N  V  W  L  *  H  V  *  H  Q  T  *  S  C  H  L  S  K   : G  S  F  F  C  I  Y  A  Y  W  S  C  P  C  K  P  R  S  F  *  C  N  S  F  S  K  Q  *  T  W :   F  L  F  P  W  I  H  L  F  W  A  S  C  C  M  R  S  G  I  G  S  Y  *  N  L  Q  :  G  A  K  Y  G  *  E  S  K  *  N  I  P  K  V  S  R  R  S  E  G  I  F  *  Q  S  H  Y  R  R   : D  *  G  T  W  F  D  P  C  H  R  V  C  E  Q  Q  I  S  *  *  S  F  P  S  R  M  G :   C  W  C  I  F  W  S  A  M  S  E  E  W  H  V  G  T  S  C  W  *  Y  H  H  D  V  S  S  I  C  S  Y  S  R  R  T  *  R   : V  D  *  N  L  W  E  S  I  E  G  N  *  K  E  S  R  R  T  Q  V  S  E  V  I  L  V  D  S  T  S  L  T  M  A  K  N  K  I  K  C  V  W  I  F  C  K  C  P  E  *  S  K  E  S  N  I  I  F  S  P  S  C  F  L  F  H  F  T  C  S  I  V  A  P  V  D  L  L  M  N  I  C  I  P  L  T  S  N  H  Q  I  A  F  H  K  K  I  E  L  S  I  Y  I  L  V  I  N  W  V  F   </first_frame>
            <second_frame>  Q  M  *  V  K  L  V  W  Y  Y  N  N  A  L  G  R  P  N  K  K  K  F  I  A  R  A  K  A :   Y  H  G  S  T  L  I  S  A  S  L  T  G :   L  P  A  L  H  Q  N  F  D  L  P  A  P  F  V  L  H  T  D  C  P  H  Y  W  R  Y  H  L  P   : G  E  T  E  E  E  F  S  T  R  L  A  K  N  L  E  D  L  I  L  K  E  G  P  E  T  :  I  A  A  F  I  A  E  P  V  M  G  A  G  G  V  I  P  P  P  A  T  Y  F  D  K  :  I  Q  A  V  V  K  R  Y  D  I  L  F  I  A  D  E  V  I  C  A  F  G  R  L  G  T  M  F  G  S  D  M  Y  N  I  K  P  D  L  V  T  L  A  K  :  A  L  S  S  A  Y  M  P  I  G  A  V  L  V  S  P  E  V  S  D  V  I  H  S  Q  S  N  K  L   : G  S  F  S  H  G  F  T  Y  S  G  H  P  V  A  C  A  V  A  L  E  A  I  K  I  Y  K :   E  R  N  M  V  E  R  V  N  R  I  S  P  K  F  Q  E  G  L  K  A  F  S  D  S  P  I  I  G  E  :  I  R  G  L  G  L  I  L  A  T  E  F  A  N  N  K  S  P  N  D  P  F  P  P  E  W   : G  V  G  A  Y  F  G  A  Q  C  Q  K  N  G  M  L  V  R  V  A  G  D  T  I  M  M  S  P  P  F  V  V  T  P  E  E  L  D  E  :  L  I  R  I  Y  G  K  A  L  R  E  T  E  K  R  V  E  E  L  K  S  Q  K  *  Y  *  L  T  A  Q  A  *  R  W  R  K  I  K  S  N  V  F  G  Y  S  V  N  V  Q  N  E  V  K  K  V  I  *  F  L  V  Q  V  V  F  S  F  I  L  H  A  V  *  L  H  Q  L  T  C  *  *  I  Y  V  S  P  *  P  V  I  T  K  L  H  F  T  K  K  S  N  Y  Q  S  I  F  L  *  L  I  G  F  L  </second_frame>
            <third_frame>   K  C  R  *  S  W  S  G  I  I  T  M  L  L  E  G  Q  T  K  R  N  L  *  L  E  Q  K   : H  I  M  V  Q  L  L  F  L  P  V  S  L   : A  F  L  H  Y  I  K  I  L  I  F  L  L  H  L  F  F  T  P  T  V  L  I  I  G  V  I  I  C  Q  :  V  R  Q  R  R  S  S  P  P  G  W  L  K  I  *  K  I  L  S  S  K  R  G  L  K  Q :   *  L  L  L  L  L  N  Q  S  W  G  Q  E  V  S  Y  L  L  Q  L  P  I  L  I  R :   S  K  L  *  *  R  D  M  T  F  F  S  L  R  M  R  S  S  V  P  L  G  G  L  E  Q  C  L  A  L  T  C  I  T  S  N  L  I  L  S  P  *  Q  R :   L  F  L  L  H  I  C  L  L  E  L  S  L  *  A  P  K  F  L  M  *  F  I  L  K  A  I  N  L  :  V  P  F  P  M  D  S  L  I  L  G  I  L  L  H  A  Q  W  H  W  K  L  L  K  S  T   : R  S  E  I  W  L  R  E  *  I  E  Y  P  Q  S  F  K  K  V  *  R  H  F  L  T  V  P  L  S  E  R :   L  G  D  L  V  *  S  L  P  Q  S  L  R  T  T  N  L  L  M  I  L  S  L  P  N  G  :  V  L  V  H  I  L  E  R  N  V  R  R  M  A  C  W  Y  E  L  L  V  I  P  S  *  C  L  L  H  L  *  L  L  Q  K  N  L  T  S :   *  L  E  S  M  G  K  H  *  G  K  L  K  R  E  *  K  N  S  S  L  R  S  N  I  S  *  Q  H  K  L  D  D  G  E  K  *  N  Q  M  C  L  D  I  L  *  M  S  R  M  K  *  R  K  *  Y  N  F  *  S  K  L  F  S  L  S  F  Y  M  Q  Y  S  C  T  S  *  L  V  D  E  Y  M  Y  P  L  N  Q  *  S  P  N  C  I  S  Q  K  N  R  I  I  N  L  Y  S  C  N  *  L  G  F  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0048H05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11597" stop="11670"/>
                    <exon start="11758" stop="11796"/>
                    <exon start="11886" stop="11974"/>
                    <exon start="12059" stop="12135"/>
                    <exon start="12221" stop="12295"/>
                    <exon start="19468" stop="19599"/>
                    <exon start="19682" stop="19769"/>
                    <exon start="19855" stop="19933"/>
                    <exon start="20114" stop="20204"/>
                    <exon start="20291" stop="20369"/>
                    <exon start="20452" stop="20567"/>
                    <exon start="20708" stop="20779"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKLVWYYNNALGRPNKKKFIARAKAYHGSTLISASLTGLPALHQNFDLPAPFVLHTDCPHYWRYHLPGETEEEFSTRLAKNLEDLILKEGPETIAAFIAEPVMGAGGVIPPPATYFDKIQAVVKRYDILFIADEVICAFGRLGTMFGSDMYNIKPDLVTLAKALSSAYMPIGAVLVSPEVSDVIHSQSNKLGSFSHGFTYSGHPVACAVALEAIKIYKERNMVERVNRISPKFQEGLKAFSDSPIIGEIRGLGLILATEFANNKSPNDPFPPEWGVGAYFGAQCQKNGMLVRVAGDTIMMSPPFVVTPEELDELIRIYGKALRETEKRVEELKSQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="9771" e_stop="9904"/>
            <exon e_start="10111" e_stop="10195"/>
            <exon e_start="10278" e_stop="10350"/>
            <exon e_start="11002" e_stop="11099"/>
            <exon e_start="11213" e_stop="11305"/>
            <exon e_start="11597" e_stop="11670"/>
            <exon e_start="11758" e_stop="11796"/>
            <exon e_start="11886" e_stop="11974"/>
            <exon e_start="12059" e_stop="12135"/>
            <exon e_start="12221" e_stop="12295"/>
            <exon e_start="12758" e_stop="12821"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.990" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.586" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.584" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="9771" e_stop="9904" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9905" i_stop="10110" i_length="206"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10111" e_stop="10195" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.984">
            <gDNA_intron_boundary i_start="10196" i_stop="10277" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10278" e_stop="10350" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="0.586" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10351" i_stop="11001" i_length="651"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11002" e_stop="11099" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.584" acc_prob="0.998">
            <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11213" e_stop="11305" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.974">
            <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="11597" e_stop="11670" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.965">
            <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="11758" e_stop="11796" e_length="39"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="0.930">
            <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="11886" e_stop="11974" e_length="89"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="12059" e_stop="12135" e_length="77"/>
          </exon>
          <intron i_serial="9" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="12221" e_stop="12295" e_length="75"/>
          </exon>
          <intron i_serial="10" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12296" i_stop="12757" i_length="462"/>
          </intron>
          <exon e_serial="11" e_score="0.921">
            <gDNA_exon_boundary e_start="12758" e_stop="12821" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9771" stop="9904"/>
              <exon start="10111" stop="10195"/>
              <exon start="10278" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9772" stop="9904"/>
              <exon start="10111" stop="10195"/>
              <exon start="10278" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9772" stop="9904"/>
              <exon start="10111" stop="10195"/>
              <exon start="10278" stop="10300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9780" stop="9904"/>
              <exon start="10111" stop="10195"/>
              <exon start="10278" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9812" stop="9904"/>
              <exon start="10111" stop="10195"/>
              <exon start="10278" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9830" stop="9904"/>
              <exon start="10111" stop="10195"/>
              <exon start="10278" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9878" stop="9904"/>
              <exon start="10111" stop="10195"/>
              <exon start="10278" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10123" stop="10195"/>
              <exon start="10278" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10156" stop="10195"/>
              <exon start="10278" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10188" stop="10195"/>
              <exon start="10278" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10278" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10279" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10292" stop="10350"/>
              <exon start="11002" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="12758" stop="12795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11056" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11085" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="12758" stop="12794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11090" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="12758" stop="12821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11090" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11763" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11768" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="12758" stop="12815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336609" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TANGCTGGTTTCCATGGAAAACGTATTCCAGCAGTTAGCAGTTTACAGGAGCATATTGTTAAATCAACACCGGCAAGATATAACAGTACACAGGCATGTTTGGAAACTGATATTTCTGGAACTGATAATAAAGG : GTTCAAGGGTCATGATATGTTGGCACCCTTCACTGCTGGGTGGCAAAGTACTGATGTTGATCCTTTGATTATAGAGAAGTCTGAG : GGATCCCATGTCTATGACATGCAAGGGAGGAAGTATATTGATACTCTAGCTGGTTTGTGGTGCACAGCACTAG : GGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTG : GATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG : GTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC : ATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGG : CCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAG : GTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACA : ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAG : ATTCAANCTGTATTGAAAAAATATGACATCCTTTTCATTGCGGATGAAGTCATCTGTGCCTTTG</gDNA_template>
            <first_frame> Y  A  G  F  H  G  K  R  I  P  A  V  S  S  L  Q  E  H  I  V  K  S  T  P  A  R  Y  N  S  T  Q  A  C  L  E  T  D  I  S  G  T  D  N  K  G :   F  K  G  H  D  M  L  A  P  F  T  A  G  W  Q  S  T  D  V  D  P  L  I  I  E  K  S  E  :  G  S  H  V  Y  D  M  Q  G  R  K  Y  I  D  T  L  A  G  L  W  C  T  A  L   : G  G  N  E  P  R  L  V  D  A  A  T  K  Q  L  N  T  L  P  F  Y  H  S  F  W  N  R  T  T  K  P  S  L  :  D  L  A  K  E  L  L  D  M  F  T  A  K  K  M  A  K  A  F  F  T  N  S  G  S  E  A  N  D  T  Q  :  V  K  L  V  W  Y  Y  N  N  A  L  G  R  P  N  K  K  K  F  I  A  R  A  K  A :   Y  H  G  S  T  L  I  S  A  S  L  T  G :   L  P  A  L  H  Q  N  F  D  L  P  A  P  F  V  L  H  T  D  C  P  H  Y  W  R  Y  H  L  P   : G  E  T  E  E  E  F  S  T  R  L  A  K  N  L  E  D  L  I  L  K  E  G  P  E  T  :  I  A  A  F  I  A  E  P  V  M  G  A  G  G  V  I  P  P  P  A  T  Y  F  D  K  :  I  Q  S  V  L  K  K  Y  D  I  L  F  I  A  D  E  V  I  C  A  F  </first_frame>
            <second_frame>  M  L  V  S  M  E  N  V  F  Q  Q  L  A  V  Y  R  S  I  L  L  N  Q  H  R  Q  D  I  T  V  H  R  H  V  W  K  L  I  F  L  E  L  I  I  K   : G  S  R  V  M  I  C  W  H  P  S  L  L  G  G  K  V  L  M  L  I  L  *  L  *  R  S  L  R :   D  P  M  S  M  T  C  K  G  G  S  I  L  I  L  *  L  V  C  G  A  Q  H  *  :  G  G  T  S  L  A  W  L  M  L  P  L  S  N  *  T  H  C  R  F  T  I  H  F  G  T  V  Q  Q  N  L  L  W :   I  L  R  R  S  F  *  I  C  S  L  Q  R  K  W  Q  K  L  F  S  P  I  V  D  Q  K  P  M  I  P  R :   *  S  W  S  G  I  I  T  M  L  L  E  G  Q  T  K  R  N  L  *  L  E  Q  K   : H  I  M  V  Q  L  L  F  L  P  V  S  L   : A  F  L  H  Y  I  K  I  L  I  F  L  L  H  L  F  F  T  P  T  V  L  I  I  G  V  I  I  C  Q  :  V  R  Q  R  R  S  S  P  P  G  W  L  K  I  *  K  I  L  S  S  K  R  G  L  K  Q :   *  L  L  L  L  L  N  Q  S  W  G  Q  E  V  S  Y  L  L  Q  L  P  I  L  I  R :   F  N  L  Y  *  K  N  M  T  S  F  S  L  R  M  K  S  S  V  P  L </second_frame>
            <third_frame>   C  W  F  P  W  K  T  Y  S  S  S  *  Q  F  T  G  A  Y  C  *  I  N  T  G  K  I  *  Q  Y  T  G  M  F  G  N  *  Y  F  W  N  *  *  *  R  :  V  Q  G  S  *  Y  V  G  T  L  H  C  W  V  A  K  Y  *  C  *  S  F  D  Y  R  E  V  *   : G  I  P  C  L  *  H  A  R  E  E  V  Y  *  Y  S  S  W  F  V  V  H  S  T  R :   G  E  R  A  S  P  G  *  C  C  H  *  A  I  K  H  I  A  V  L  P  F  I  L  E  P  Y  N  K  T  F  F   : G  S  C  E  G  A  S  R  Y  V  H  C  K  E  N  G  K  S  F  F  H  Q  *  W  I  R  S  Q  *  Y  P   : G  E  A  G  L  V  L  *  Q  C  S  W  K  A  K  Q  K  E  I  Y  S  S  S  K  S  :  I  S  W  F  N  S  Y  F  C  Q  S  H  W  :  P  S  C  I  T  S  K  F  *  S  S  C  S  I  C  S  S  H  R  L  S  S  L  L  A  L  S  S  A  R :   *  D  R  G  G  V  L  H  Q  V  G  *  K  F  R  R  S  Y  P  Q  R  G  A  *  N   : N  S  C  F  Y  C  *  T  S  H  G  G  R  R  C  H  T  S  S  S  Y  L  F  *  *   : D  S  I  C  I  E  K  I  *  H  P  F  H  C  G  *  S  H  L  C  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0048H05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9771" stop="9904"/>
                    <exon start="10111" stop="10195"/>
                    <exon start="10278" stop="10350"/>
                    <exon start="11002" stop="11099"/>
                    <exon start="11213" stop="11305"/>
                    <exon start="11597" stop="11670"/>
                    <exon start="11758" stop="11796"/>
                    <exon start="11886" stop="11974"/>
                    <exon start="12059" stop="12135"/>
                    <exon start="12221" stop="12295"/>
                    <exon start="12758" stop="12820"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YAGFHGKRIPAVSSLQEHIVKSTPARYNSTQACLETDISGTDNKGFKGHDMLAPFTAGWQSTDVDPLIIEKSEGSHVYDMQGRKYIDTLAGLWCTALGGNEPRLVDAATKQLNTLPFYHSFWNRTTKPSLDLAKELLDMFTAKKMAKAFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARAKAYHGSTLISASLTGLPALHQNFDLPAPFVLHTDCPHYWRYHLPGETEEEFSTRLAKNLEDLILKEGPETIAAFIAEPVMGAGGVIPPPATYFDKIQSVLKKYDILFIADEVICAF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="18791" e_stop="18809"/>
            <exon e_start="19468" e_stop="19599"/>
            <exon e_start="19682" e_stop="19769"/>
            <exon e_start="19855" e_stop="19933"/>
            <exon e_start="20114" e_stop="20204"/>
            <exon e_start="20291" e_stop="20369"/>
            <exon e_start="20452" e_stop="20567"/>
            <exon e_start="20708" e_stop="21041"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.983" e_score="0.579"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="0.992"/>
          <exon-intron don_prob="0.988" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.691" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.579">
            <gDNA_exon_boundary e_start="18791" e_stop="18809" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.983">
            <gDNA_intron_boundary i_start="18810" i_stop="19467" i_length="658"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="19468" e_stop="19599" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="19600" i_stop="19681" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19682" e_stop="19769" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.976">
            <gDNA_intron_boundary i_start="19770" i_stop="19854" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19855" e_stop="19933" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.691">
            <gDNA_intron_boundary i_start="19934" i_stop="20113" i_length="180"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="20114" e_stop="20204" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20205" i_stop="20290" i_length="86"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20291" e_stop="20369" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.936">
            <gDNA_intron_boundary i_start="20370" i_stop="20451" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="20452" e_stop="20567" e_length="116"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20568" i_stop="20707" i_length="140"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="20708" e_stop="21041" e_length="334"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18791" stop="18809"/>
              <exon start="19468" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19516" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="20806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19566" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="20794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19566" stop="19599"/>
              <exon start="19682" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19739" stop="19769"/>
              <exon start="19855" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="21021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210775" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19863" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="20890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289060" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19930" stop="19933"/>
              <exon start="20114" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="21041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249337" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20185" stop="20204"/>
              <exon start="20291" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="20890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20330" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="21013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20354" stop="20369"/>
              <exon start="20452" stop="20567"/>
              <exon start="20708" stop="21028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20463" stop="20567"/>
              <exon start="20708" stop="20997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330763" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20544" stop="20567"/>
              <exon start="20708" stop="21018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556647" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20825" stop="21039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCCTTCTCTTATACCAAG : ATCCAAGCTGTAGTGAAGAGATATGACATTCTTTTCATTGCGGATGAGGTCATCTGTGCCTTTGGGAGGCTTGGAACAATGTTTGGCTCTGACATGTATAACATCAAACCTGATCTTGTCACCTTAGCAAAG : GCTCTTTCTTCTGCATATATGCCTATTGGAGCTGTCCTTGTAAGCCCCGAAGTTTCTGATGTAATTCATTCTCAAAGCAATAAACTTG : GTTCCTTTTCCCATGGATTCACTTATTCTGGGCATCCTGTTGCATGCGCAGTGGCATTGGAAGCTATTAAAATCTACAA : GGAGCGAAATATGGTTGAGAGAGTAAATAGAATATCCCCAAAGTTTCAAGAAGGTCTGAAGGCATTTTCTGACAGTCCCATTATCGGAGAG : ATTAGGGGACTTGGTTTGATCCTTGCCACAGAGTTTGCGAACAACAAATCTCCTAATGATCCTTTCCCTCCCGAATGGG : GTGTTGGTGCATATTTTGGAGCGCAATGTCAGAAGAATGGCATGTTGGTACGAGTTGCTGGTGATACCATCATGATGTCTCCTCCATTTGTAGTTACTCCAGAAGAACTTGACGAG : TTGATTAGAATCTATGGGAAAGCATTGAGGGAAACTGAAAAGAGAGTAGAAGAACTCAAGTCTCAGAAGTAATATTAGTTGACAGCACAAGCTTGACGATGGCGAAAAATAAAATCAAATGTGTTTGGATATTCTGTAAATGTCCAGAATGAAGTAAAGAAAGTAATATAATTTTTAGTCCAAGTTGTTTTCTCTTTCATTTTACATGCAGTATAGTTGCACCAGTTGACTTGTTGATGAATATATGTATCCCCTTAACCAGTAATCACCAAATTGCATTTCACAAAAAAATCGAATTATCAATCTATATTCTTGTAATTAATTGGGTTTTTAT</gDNA_template>
            <first_frame> S  L  L  L  Y  Q   : D  P  S  C  S  E  E  I  *  H  S  F  H  C  G  *  G  H  L  C  L  W  E  A  W  N  N  V  W  L  *  H  V  *  H  Q  T  *  S  C  H  L  S  K   : G  S  F  F  C  I  Y  A  Y  W  S  C  P  C  K  P  R  S  F  *  C  N  S  F  S  K  Q  *  T  W :   F  L  F  P  W  I  H  L  F  W  A  S  C  C  M  R  S  G  I  G  S  Y  *  N  L  Q  :  G  A  K  Y  G  *  E  S  K  *  N  I  P  K  V  S  R  R  S  E  G  I  F  *  Q  S  H  Y  R  R   : D  *  G  T  W  F  D  P  C  H  R  V  C  E  Q  Q  I  S  *  *  S  F  P  S  R  M  G :   C  W  C  I  F  W  S  A  M  S  E  E  W  H  V  G  T  S  C  W  *  Y  H  H  D  V  S  S  I  C  S  Y  S  R  R  T  *  R   : V  D  *  N  L  W  E  S  I  E  G  N  *  K  E  S  R  R  T  Q  V  S  E  V  I  L  V  D  S  T  S  L  T  M  A  K  N  K  I  K  C  V  W  I  F  C  K  C  P  E  *  S  K  E  S  N  I  I  F  S  P  S  C  F  L  F  H  F  T  C  S  I  V  A  P  V  D  L  L  M  N  I  C  I  P  L  T  S  N  H  Q  I  A  F  H  K  K  I  E  L  S  I  Y  I  L  V  I  N  W  V  F   </first_frame>
            <second_frame>  A  F  S  Y  T  K  :  I  Q  A  V  V  K  R  Y  D  I  L  F  I  A  D  E  V  I  C  A  F  G  R  L  G  T  M  F  G  S  D  M  Y  N  I  K  P  D  L  V  T  L  A  K  :  A  L  S  S  A  Y  M  P  I  G  A  V  L  V  S  P  E  V  S  D  V  I  H  S  Q  S  N  K  L   : G  S  F  S  H  G  F  T  Y  S  G  H  P  V  A  C  A  V  A  L  E  A  I  K  I  Y  K :   E  R  N  M  V  E  R  V  N  R  I  S  P  K  F  Q  E  G  L  K  A  F  S  D  S  P  I  I  G  E  :  I  R  G  L  G  L  I  L  A  T  E  F  A  N  N  K  S  P  N  D  P  F  P  P  E  W   : G  V  G  A  Y  F  G  A  Q  C  Q  K  N  G  M  L  V  R  V  A  G  D  T  I  M  M  S  P  P  F  V  V  T  P  E  E  L  D  E  :  L  I  R  I  Y  G  K  A  L  R  E  T  E  K  R  V  E  E  L  K  S  Q  K  *  Y  *  L  T  A  Q  A  *  R  W  R  K  I  K  S  N  V  F  G  Y  S  V  N  V  Q  N  E  V  K  K  V  I  *  F  L  V  Q  V  V  F  S  F  I  L  H  A  V  *  L  H  Q  L  T  C  *  *  I  Y  V  S  P  *  P  V  I  T  K  L  H  F  T  K  K  S  N  Y  Q  S  I  F  L  *  L  I  G  F  L  </second_frame>
            <third_frame>   P  S  L  I  P  R :   S  K  L  *  *  R  D  M  T  F  F  S  L  R  M  R  S  S  V  P  L  G  G  L  E  Q  C  L  A  L  T  C  I  T  S  N  L  I  L  S  P  *  Q  R :   L  F  L  L  H  I  C  L  L  E  L  S  L  *  A  P  K  F  L  M  *  F  I  L  K  A  I  N  L  :  V  P  F  P  M  D  S  L  I  L  G  I  L  L  H  A  Q  W  H  W  K  L  L  K  S  T   : R  S  E  I  W  L  R  E  *  I  E  Y  P  Q  S  F  K  K  V  *  R  H  F  L  T  V  P  L  S  E  R :   L  G  D  L  V  *  S  L  P  Q  S  L  R  T  T  N  L  L  M  I  L  S  L  P  N  G  :  V  L  V  H  I  L  E  R  N  V  R  R  M  A  C  W  Y  E  L  L  V  I  P  S  *  C  L  L  H  L  *  L  L  Q  K  N  L  T  S :   *  L  E  S  M  G  K  H  *  G  K  L  K  R  E  *  K  N  S  S  L  R  S  N  I  S  *  Q  H  K  L  D  D  G  E  K  *  N  Q  M  C  L  D  I  L  *  M  S  R  M  K  *  R  K  *  Y  N  F  *  S  K  L  F  S  L  S  F  Y  M  Q  Y  S  C  T  S  *  L  V  D  E  Y  M  Y  P  L  N  Q  *  S  P  N  C  I  S  Q  K  N  R  I  I  N  L  Y  S  C  N  *  L  G  F  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0048H05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18792" stop="18809"/>
                    <exon start="19468" stop="19599"/>
                    <exon start="19682" stop="19769"/>
                    <exon start="19855" stop="19933"/>
                    <exon start="20114" stop="20204"/>
                    <exon start="20291" stop="20369"/>
                    <exon start="20452" stop="20567"/>
                    <exon start="20708" stop="20779"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFSYTKIQAVVKRYDILFIADEVICAFGRLGTMFGSDMYNIKPDLVTLAKALSSAYMPIGAVLVSPEVSDVIHSQSNKLGSFSHGFTYSGHPVACAVALEAIKIYKERNMVERVNRISPKFQEGLKAFSDSPIIGEIRGLGLILATEFANNKSPNDPFPPEWGVGAYFGAQCQKNGMLVRVAGDTIMMSPPFVVTPEELDELIRIYGKALRETEKRVEELKSQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="10992" e_stop="11099"/>
            <exon e_start="11213" e_stop="11305"/>
            <exon e_start="11597" e_stop="11670"/>
            <exon e_start="11758" e_stop="11796"/>
            <exon e_start="11886" e_stop="11974"/>
            <exon e_start="12059" e_stop="12135"/>
            <exon e_start="12221" e_stop="12295"/>
            <exon e_start="12758" e_stop="12821"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.584" acc_prob="0.998" e_score="0.971"/>
          <exon-intron don_prob="0.993" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="10992" e_stop="11099" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.584" acc_prob="0.998">
            <gDNA_intron_boundary i_start="11100" i_stop="11212" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11213" e_stop="11305" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.974">
            <gDNA_intron_boundary i_start="11306" i_stop="11596" i_length="291"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11597" e_stop="11670" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.965">
            <gDNA_intron_boundary i_start="11671" i_stop="11757" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11758" e_stop="11796" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.930">
            <gDNA_intron_boundary i_start="11797" i_stop="11885" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11886" e_stop="11974" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="11975" i_stop="12058" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12059" e_stop="12135" e_length="77"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12136" i_stop="12220" i_length="85"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="12221" e_stop="12295" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12296" i_stop="12757" i_length="462"/>
          </intron>
          <exon e_serial="8" e_score="0.921">
            <gDNA_exon_boundary e_start="12758" e_stop="12821" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10992" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10996" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="12758" stop="12801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10996" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11056" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11085" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="12758" stop="12794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11090" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="12758" stop="12821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11090" stop="11099"/>
              <exon start="11213" stop="11305"/>
              <exon start="11597" stop="11670"/>
              <exon start="11758" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11763" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11768" stop="11796"/>
              <exon start="11886" stop="11974"/>
              <exon start="12059" stop="12135"/>
              <exon start="12221" stop="12295"/>
              <exon start="12758" stop="12815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336609" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCTTGTANGGGGGAACGAGCCTCGCCTGGTTGATGCTGCCACTAAGCAATTAAACACATTGCCGTTTTACCATTCATTTTGGAACCGTACAACAAAACCTTCTTTG : GATCTTGCGAAGGAGCTTCTAGATATGTTCACTGCAAAGAAAATGGCAAAAGCTTTTTTCACCAATAGTGGATCAGAAGCCAATGATACCCAG : GTGAAGCTGGTCTGGTATTATAACAATGCTCTTGGAAGGCCAAACAAAAAGAAATTTATAGCTCGAGCAAAAGC : ATATCATGGTTCAACTCTTATTTCTGCCAGTCTCACTGG : CCTTCCTGCATTACATCAAAATTTTGATCTTCCTGCTCCATTTGTTCTTCACACCGACTGTCCTCATTATTGGCGTTATCATCTGCCAG : GTGAGACAGAGGAGGAGTTCTCCACCAGGTTGGCTAAAAATTTAGAAGATCTTATCCTCAAAGAGGGGCCTGAAACA : ATAGCTGCTTTTATTGCTGAACCAGTCATGGGGGCAGGAGGTGTCATACCTCCTCCAGCTACCTATTTTGATAAG : ATTCAANCTGTATTGAAAAAATATGACATCCTTTTCATTGCGGATGAAGTCATCTGTGCCTTTG</gDNA_template>
            <first_frame> I  L  V  W  G  N  E  P  R  L  V  D  A  A  T  K  Q  L  N  T  L  P  F  Y  H  S  F  W  N  R  T  T  K  P  S  L  :  D  L  A  K  E  L  L  D  M  F  T  A  K  K  M  A  K  A  F  F  T  N  S  G  S  E  A  N  D  T  Q  :  V  K  L  V  W  Y  Y  N  N  A  L  G  R  P  N  K  K  K  F  I  A  R  A  K  A :   Y  H  G  S  T  L  I  S  A  S  L  T  G :   L  P  A  L  H  Q  N  F  D  L  P  A  P  F  V  L  H  T  D  C  P  H  Y  W  R  Y  H  L  P   : G  E  T  E  E  E  F  S  T  R  L  A  K  N  L  E  D  L  I  L  K  E  G  P  E  T  :  I  A  A  F  I  A  E  P  V  M  G  A  G  G  V  I  P  P  P  A  T  Y  F  D  K  :  I  Q  S  V  L  K  K  Y  D  I  L  F  I  A  D  E  V  I  C  A  F  </first_frame>
            <second_frame>  F  L  Y  G  G  T  S  L  A  W  L  M  L  P  L  S  N  *  T  H  C  R  F  T  I  H  F  G  T  V  Q  Q  N  L  L  W :   I  L  R  R  S  F  *  I  C  S  L  Q  R  K  W  Q  K  L  F  S  P  I  V  D  Q  K  P  M  I  P  R :   *  S  W  S  G  I  I  T  M  L  L  E  G  Q  T  K  R  N  L  *  L  E  Q  K   : H  I  M  V  Q  L  L  F  L  P  V  S  L   : A  F  L  H  Y  I  K  I  L  I  F  L  L  H  L  F  F  T  P  T  V  L  I  I  G  V  I  I  C  Q  :  V  R  Q  R  R  S  S  P  P  G  W  L  K  I  *  K  I  L  S  S  K  R  G  L  K  Q :   *  L  L  L  L  L  N  Q  S  W  G  Q  E  V  S  Y  L  L  Q  L  P  I  L  I  R :   F  N  L  Y  *  K  N  M  T  S  F  S  L  R  M  K  S  S  V  P  L </second_frame>
            <third_frame>   S  C  M  G  E  R  A  S  P  G  *  C  C  H  *  A  I  K  H  I  A  V  L  P  F  I  L  E  P  Y  N  K  T  F  F   : G  S  C  E  G  A  S  R  Y  V  H  C  K  E  N  G  K  S  F  F  H  Q  *  W  I  R  S  Q  *  Y  P   : G  E  A  G  L  V  L  *  Q  C  S  W  K  A  K  Q  K  E  I  Y  S  S  S  K  S  :  I  S  W  F  N  S  Y  F  C  Q  S  H  W  :  P  S  C  I  T  S  K  F  *  S  S  C  S  I  C  S  S  H  R  L  S  S  L  L  A  L  S  S  A  R :   *  D  R  G  G  V  L  H  Q  V  G  *  K  F  R  R  S  Y  P  Q  R  G  A  *  N   : N  S  C  F  Y  C  *  T  S  H  G  G  R  R  C  H  T  S  S  S  Y  L  F  *  *   : D  S  I  C  I  E  K  I  *  H  P  F  H  C  G  *  S  H  L  C  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0048H05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10992" stop="11099"/>
                    <exon start="11213" stop="11305"/>
                    <exon start="11597" stop="11670"/>
                    <exon start="11758" stop="11796"/>
                    <exon start="11886" stop="11974"/>
                    <exon start="12059" stop="12135"/>
                    <exon start="12221" stop="12295"/>
                    <exon start="12758" stop="12820"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILVWGNEPRLVDAATKQLNTLPFYHSFWNRTTKPSLDLAKELLDMFTAKKMAKAFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARAKAYHGSTLISASLTGLPALHQNFDLPAPFVLHTDCPHYWRYHLPGETEEEFSTRLAKNLEDLILKEGPETIAAFIAEPVMGAGGVIPPPATYFDKIQSVLKKYDILFIADEVICAF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="32082" PGL_stop="27701"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32082" e_stop="31816"/>
            <exon e_start="30060" e_stop="30018"/>
            <exon e_start="29833" e_stop="29829"/>
            <exon e_start="28128" e_stop="27701"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.389" acc_prob="0.602" e_score="0.951"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="0.558"/>
          <exon-intron don_prob="0.849" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="32082" e_stop="31816" e_length="267"/>
          </exon>
          <intron i_serial="1" don_prob="0.389" acc_prob="0.602">
            <gDNA_intron_boundary i_start="31815" i_stop="30061" i_length="1755"/>
          </intron>
          <exon e_serial="2" e_score="0.558">
            <gDNA_exon_boundary e_start="30060" e_stop="30018" e_length="43"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30017" i_stop="29834" i_length="184"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29833" e_stop="29829" e_length="5"/>
          </exon>
          <intron i_serial="3" don_prob="0.849" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29828" i_stop="28129" i_length="1700"/>
          </intron>
          <exon e_serial="4" e_score="0.953">
            <gDNA_exon_boundary e_start="28128" e_stop="27701" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32082" stop="31816"/>
              <exon start="30060" stop="30018"/>
              <exon start="29833" stop="29829"/>
              <exon start="28128" stop="27701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693714" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATACTAAGCAACCAATTTAATAAGTTTCTAAAGTTTAATACTTATCATCCCAAAATCTGATAGTCATCACATCAAGGACATCTAATCTCCAATACTAATTCTAAGAATATCGAATACACTAAAATAAAGAATAAAATGGTATGTGTCCAAAAGTATAGGACATCATGTCGTGACCGAGAGAATCCAACACGAGCTTGAATGGATAGCTCACCCTGTAACTTGATATGCGGGAGGCTGGCTAGAGCTGAGGGAAATCAGAAGTCATAG : ATACCAATTTACTCATCGTTCGTCCTCGAACGATCAAAGGAAG : AAAAC : AAGTAGGGCTCAGTACGAGGCAACATGTACTGAGTAAGTATCATCGGTCAACCCAAAATAGTAACTAATATACAAAGAATAATAGTATGAACTCAACTATAGCACTTAACATGTGATAAACAACAAACAACATGAACAAGTGTCAATAACAATGAAGTAAGCACGTATTAAGTCAATGGTATCAAGATCACACATGAGGACTCATGTCTCCAAACCAAACCATTTTGGGAGTTGAGTTCTTTGAGATTGAATATCTTCCATTAATTCAACATATTTTTCCTTTAATATTATCGTGTCGGAGCGTGACACTCCAATCCAAAAATATCGTGTCGGAACGTGACACTCCGATCCAAGAATACCGTGTCGGAATATGACACTCCGATCCAAGATTACCGTGTCGAAACGTGACACTCCGATCCAAGAATACC</gDNA_template>
            <first_frame> I  L  S  N  Q  F  N  K  F  L  K  F  N  T  Y  H  P  K  I  *  *  S  S  H  Q  G  H  L  I  S  N  T  N  S  K  N  I  E  Y  T  K  I  K  N  K  M  V  C  V  Q  K  Y  R  T  S  C  R  D  R  E  N  P  T  R  A  *  M  D  S  S  P  C  N  L  I  C  G  R  L  A  R  A  E  G  N  Q  K  S  *  :  I  P  I  Y  S  S  F  V  L  E  R  S  K  E   : E  N  :  K  *  G  S  V  R  G  N  M  Y  *  V  S  I  I  G  Q  P  K  I  V  T  N  I  Q  R  I  I  V  *  T  Q  L  *  H  L  T  C  D  K  Q  Q  T  T  *  T  S  V  N  N  N  E  V  S  T  Y  *  V  N  G  I  K  I  T  H  E  D  S  C  L  Q  T  K  P  F  W  E  L  S  S  L  R  L  N  I  F  H  *  F  N  I  F  F  L  *  Y  Y  R  V  G  A  *  H  S  N  P  K  I  S  C  R  N  V  T  L  R  S  K  N  T  V  S  E  Y  D  T  P  I  Q  D  Y  R  V  E  T  *  H  S  D  P  R  I   </first_frame>
            <second_frame>  Y  *  A  T  N  L  I  S  F  *  S  L  I  L  I  I  P  K  S  D  S  H  H  I  K  D  I  *  S  P  I  L  I  L  R  I  S  N  T  L  K  *  R  I  K  W  Y  V  S  K  S  I  G  H  H  V  V  T  E  R  I  Q  H  E  L  E  W  I  A  H  P  V  T  *  Y  A  G  G  W  L  E  L  R  E  I  R  S  H  R :   Y  Q  F  T  H  R  S  S  S  N  D  Q  R  K  :  K  T :   S  R  A  Q  Y  E  A  T  C  T  E  *  V  S  S  V  N  P  K  *  *  L  I  Y  K  E  *  *  Y  E  L  N  Y  S  T  *  H  V  I  N  N  K  Q  H  E  Q  V  S  I  T  M  K  *  A  R  I  K  S  M  V  S  R  S  H  M  R  T  H  V  S  K  P  N  H  F  G  S  *  V  L  *  D  *  I  S  S  I  N  S  T  Y  F  S  F  N  I  I  V  S  E  R  D  T  P  I  Q  K  Y  R  V  G  T  *  H  S  D  P  R  I  P  C  R  N  M  T  L  R  S  K  I  T  V  S  K  R  D  T  P  I  Q  E  Y  </second_frame>
            <third_frame>   T  K  Q  P  I  *  *  V  S  K  V  *  Y  L  S  S  Q  N  L  I  V  I  T  S  R  T  S  N  L  Q  Y  *  F  *  E  Y  R  I  H  *  N  K  E  *  N  G  M  C  P  K  V  *  D  I  M  S  *  P  R  E  S  N  T  S  L  N  G  *  L  T  L  *  L  D  M  R  E  A  G  *  S  *  G  K  S  E  V  I   : D  T  N  L  L  I  V  R  P  R  T  I  K  G  R :   K   : Q  V  G  L  S  T  R  Q  H  V  L  S  K  Y  H  R  S  T  Q  N  S  N  *  Y  T  K  N  N  S  M  N  S  T  I  A  L  N  M  *  *  T  T  N  N  M  N  K  C  Q  *  Q  *  S  K  H  V  L  S  Q  W  Y  Q  D  H  T  *  G  L  M  S  P  N  Q  T  I  L  G  V  E  F  F  E  I  E  Y  L  P  L  I  Q  H  I  F  P  L  I  L  S  C  R  S  V  T  L  Q  S  K  N  I  V  S  E  R  D  T  P  I  Q  E  Y  R  V  G  I  *  H  S  D  P  R  L  P  C  R  N  V  T  L  R  S  K  N  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0048H05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 220 chains have been computed
$ 
$ memory statistics:
$ 188512 bytes spliced alignments in total
$ 50 spliced alignments have been stored
$ 3770 bytes was the average size of a spliced alignment
$ 11928 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 5964 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 241 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-23 14:12:23
-->
